BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022512
         (296 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4R4N5|STMN3_MACFA Stathmin-3 OS=Macaca fascicularis GN=STMN3 PE=2 SV=1
          Length = 180

 Score = 32.3 bits (72), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 150 LEVVEKSKKGDVIRVVIELNFRAEFE---MARASEEYNRLVNRLPEVFVGKTERLKAVIK 206
           LE  E+ +K    +V+ +L  R E E   + +A EE N    +  E    K E  K + +
Sbjct: 89  LEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIRE 148

Query: 207 IMCAAAKKCMKEKKMHIAPWRKHKYMQAKWLG 238
              AA ++ ++EK++H A  R++K  + +  G
Sbjct: 149 AHLAALRERLREKELHAAEVRRNKEQREEMSG 180


>sp|Q5R8C6|STMN3_PONAB Stathmin-3 OS=Pongo abelii GN=STMN3 PE=2 SV=1
          Length = 180

 Score = 32.3 bits (72), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 150 LEVVEKSKKGDVIRVVIELNFRAEFE---MARASEEYNRLVNRLPEVFVGKTERLKAVIK 206
           LE  E+ +K    +V+ +L  R E E   + +A EE N    +  E    K E  K + +
Sbjct: 89  LEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIRE 148

Query: 207 IMCAAAKKCMKEKKMHIAPWRKHKYMQAKWLG 238
              AA ++ ++EK++H A  R++K  + +  G
Sbjct: 149 AHLAALRERLREKELHAAEVRRNKEQREEMSG 180


>sp|Q9NZ72|STMN3_HUMAN Stathmin-3 OS=Homo sapiens GN=STMN3 PE=1 SV=3
          Length = 180

 Score = 32.3 bits (72), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 150 LEVVEKSKKGDVIRVVIELNFRAEFE---MARASEEYNRLVNRLPEVFVGKTERLKAVIK 206
           LE  E+ +K    +V+ +L  R E E   + +A EE N    +  E    K E  K + +
Sbjct: 89  LEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIRE 148

Query: 207 IMCAAAKKCMKEKKMHIAPWRKHKYMQAKWLG 238
              AA ++ ++EK++H A  R++K  + +  G
Sbjct: 149 AHLAALRERLREKELHAAEVRRNKEQREEMSG 180


>sp|A9FBU8|SYM1_SORC5 Methionine--tRNA ligase 1 OS=Sorangium cellulosum (strain So ce56)
           GN=metG1 PE=3 SV=1
          Length = 690

 Score = 32.3 bits (72), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 172 AEFEMARAS-------EEYNRLVNRLPEVFVGKTERLKAVIKIMCAAAKKCMKEKKMHIA 224
           A F+ ARA+       +  N  V+R+    + K    KA ++ +C  A    ++  +++A
Sbjct: 427 AAFDYARATRSIVALADRANEYVDRMQPWALAKQPEKKAELQAVCTVALNLFRQIVLYLA 486

Query: 225 P-WRKHKYMQAKWLG-GYQRPTAETTPLIMMPVVSYAYADRQPKPKAAASML 274
           P   K     A+ LG    R     TPL+  PV +Y +  ++ +P A   M+
Sbjct: 487 PVLPKLADDVARLLGCPMDRWALAKTPLVGTPVAAYEHLMKRVEPGAVEKMI 538


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,643,433
Number of Sequences: 539616
Number of extensions: 4045199
Number of successful extensions: 11333
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 11319
Number of HSP's gapped (non-prelim): 31
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)