Query 022512
Match_columns 296
No_of_seqs 163 out of 205
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:06:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04720 DUF506: Protein of un 100.0 1.1E-71 2.4E-76 505.1 22.8 209 24-242 1-218 (218)
2 TIGR01615 A_thal_3542 uncharac 100.0 7.5E-63 1.6E-67 417.3 14.3 130 115-244 1-131 (131)
3 PF00797 Acetyltransf_2: N-ace 93.2 0.26 5.7E-06 44.2 6.5 60 108-173 47-109 (240)
4 PRK15047 N-hydroxyarylamine O- 88.7 1.2 2.7E-05 42.4 6.6 54 114-172 72-127 (281)
5 PF08742 C8: C8 domain; Inter 84.3 1 2.2E-05 33.8 2.9 62 164-230 10-71 (74)
6 PF14475 Mso1_Sec1_bdg: Sec1-b 72.2 4.3 9.3E-05 28.9 2.8 20 207-226 21-40 (41)
7 smart00460 TGc Transglutaminas 68.9 31 0.00067 24.4 6.8 56 108-169 7-67 (68)
8 PF09551 Spore_II_R: Stage II 62.9 75 0.0016 27.6 9.1 55 114-168 57-119 (130)
9 PF08774 VRR_NUC: VRR-NUC doma 60.0 13 0.00029 29.2 3.7 29 108-136 72-100 (100)
10 PF01841 Transglut_core: Trans 53.4 22 0.00048 27.4 4.0 56 108-168 52-113 (113)
11 COG2162 NhoA Arylamine N-acety 48.7 40 0.00087 32.8 5.6 59 114-177 73-134 (275)
12 PRK14569 D-alanyl-alanine synt 42.6 1.3E+02 0.0028 28.2 7.9 46 182-228 73-118 (296)
13 TIGR01205 D_ala_D_alaTIGR D-al 36.1 1.7E+02 0.0036 27.0 7.5 98 115-229 20-126 (315)
14 PF01927 Mut7-C: Mut7-C RNAse 35.7 28 0.00062 29.7 2.3 18 116-133 10-27 (147)
15 PRK14675 hypothetical protein; 35.1 1.7E+02 0.0036 24.9 6.8 83 116-227 16-98 (125)
16 TIGR00514 accC acetyl-CoA carb 34.5 96 0.0021 30.7 6.0 113 113-227 12-134 (449)
17 COG3349 Uncharacterized conser 34.5 53 0.0011 34.2 4.3 72 118-208 15-86 (485)
18 PRK01372 ddl D-alanine--D-alan 34.3 2.1E+02 0.0045 26.3 7.9 47 183-230 74-120 (304)
19 PRK08462 biotin carboxylase; V 33.8 1.2E+02 0.0026 29.9 6.6 110 113-227 14-136 (445)
20 PRK10556 hypothetical protein; 33.7 67 0.0015 27.2 4.0 77 116-197 6-85 (111)
21 COG5005 Mu-like prophage prote 31.1 48 0.001 29.2 2.9 60 181-242 10-70 (140)
22 smart00832 C8 C8 domain. This 31.1 40 0.00087 26.0 2.2 63 163-230 9-73 (76)
23 PF15645 Tox-PLDMTX: Dermonecr 31.1 1.3E+02 0.0027 26.3 5.5 77 108-202 5-84 (135)
24 PF09400 DUF2002: Protein of u 27.2 54 0.0012 27.9 2.4 61 116-181 6-67 (111)
25 PRK01966 ddl D-alanyl-alanine 27.0 3.9E+02 0.0084 25.5 8.6 47 182-229 98-144 (333)
26 PRK15068 tRNA mo(5)U34 methylt 26.7 17 0.00036 35.0 -0.7 52 181-233 40-96 (322)
27 PHA01753 Holliday junction res 26.4 2.1E+02 0.0046 24.6 6.0 49 115-173 11-59 (121)
28 cd00523 archeal_HJR Holliday j 26.0 2.4E+02 0.0053 23.9 6.3 49 115-173 9-57 (123)
29 PF07524 Bromo_TP: Bromodomain 24.0 53 0.0011 24.9 1.7 20 111-130 5-24 (77)
30 PF13837 Myb_DNA-bind_4: Myb/S 23.7 17 0.00037 27.5 -1.1 24 114-137 36-61 (90)
31 PF12852 Cupin_6: Cupin 23.6 1E+02 0.0023 26.5 3.7 41 172-214 115-160 (186)
32 PRK05586 biotin carboxylase; V 22.6 1.7E+02 0.0037 29.1 5.4 44 182-226 90-133 (447)
33 PHA02119 hypothetical protein 22.4 53 0.0011 26.3 1.5 19 112-130 53-71 (87)
34 smart00576 BTP Bromodomain tra 20.8 69 0.0015 24.6 1.8 21 110-130 4-24 (77)
35 PF13772 AIG2_2: AIG2-like fam 20.8 2.4E+02 0.0051 21.6 4.8 43 140-187 21-66 (83)
No 1
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=100.00 E-value=1.1e-71 Score=505.06 Aligned_cols=209 Identities=44% Similarity=0.832 Sum_probs=180.3
Q ss_pred HHHHHhhhhhcCCCCCC-----CCCCCC---CCCCCccHHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHh
Q 022512 24 FSDIVFGFMEESSESTV-----GNLCDC---KEDDNEDVEENKAFWEAQEKLLQATIGRISSFESKLRQAVKYSLEEIKL 95 (296)
Q Consensus 24 Ls~mV~~FlEe~~~~~~-----~s~~d~---~ddd~~~~~e~~~f~~~~~~lL~~~l~~~s~~e~~L~~~v~~a~~~~~~ 95 (296)
|++||++|||+++.+.. ++++++ ++|+++..++...+|+++..||+....++ ..+.+|+++|.++++....
T Consensus 1 Ls~mV~~FlE~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~e~l~~Ll~~~~~~e-~~~~~l~~~v~~~v~~~~~ 79 (218)
T PF04720_consen 1 LSDMVQGFLEEEESSAPSFSFSGNGDDSSDEDSDSDSGSSESAEFWEELQELLQCISERE-SSRRRLLADVRRAVEEAKD 79 (218)
T ss_pred CHHHHHHHhccCCcccccccccccCCCCccccccccCcccchHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHHHHh
Confidence 78999999999976431 222222 22223455567889999999999877654 4478888888888887654
Q ss_pred hCCccccCCCCCCCcchhhHHHHHHHHHhcCCceeeeeccCCCCCCcCCcceEEEEEeecCC-CCceeEEEEecCccccc
Q 022512 96 AGSKCSCRTPVAGGCRTCMRKEISVRLQNVGYNCVICKSKWKSSSEIPAGNHTYLEVVEKSK-KGDVIRVVIELNFRAEF 174 (296)
Q Consensus 96 ~~~~c~c~r~~~~~c~~~~~r~v~~~Lr~~GydAaiCkSkW~~s~~~p~G~heyIdV~~~~~-~g~~~r~IVD~dFr~qF 174 (296)
.. ..+|++|++|.||++||.+||||+||||+|++++++|+|+||||||++.+. .+..+||||||+||+||
T Consensus 80 ~~---------~~~~~~~~rr~v~~~Lr~~GydAaiCkS~W~~s~~~p~g~yeyIdV~~~~~~~~~~~r~IVd~~fr~~F 150 (218)
T PF04720_consen 80 EI---------KRGCRSCLRRSVMSRLRALGYDAAICKSRWESSGGIPAGEYEYIDVIVSGSSSGKSERYIVDPDFRSQF 150 (218)
T ss_pred hh---------cccchHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCcceeEEEEEECCCCCCcceeEEEecchHhCe
Confidence 22 025789999999999999999999999999999999999999999999754 45569999999999999
Q ss_pred eecCCCHHHHHHHhhCCCceeeChhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHhhhcCCCCC
Q 022512 175 EMARASEEYNRLVNRLPEVFVGKTERLKAVIKIMCAAAKKCMKEKKMHIAPWRKHKYMQAKWLGGYQR 242 (296)
Q Consensus 175 eIArpT~~Y~~ll~~LP~vfVG~~erL~~iV~~mc~Aak~S~k~~gm~lPPWRk~~ym~aKWl~~~~R 242 (296)
||||||++|+++|+.||.||||++++|++||++||+|||+|||++|||||||||++|||+|||++|+|
T Consensus 151 eiArpt~~Y~~ll~~lP~vfVG~~~~L~~iV~~~c~a~k~s~k~~g~~lPPWR~~~ym~aKW~~~y~R 218 (218)
T PF04720_consen 151 EIARPTPEYAALLAALPEVFVGTPERLKQIVRLMCDAAKRSFKERGMHLPPWRKNSYMQAKWLSPYKR 218 (218)
T ss_pred eecCCCHHHHHHHHhCCCceEcCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCchHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 2
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=100.00 E-value=7.5e-63 Score=417.32 Aligned_cols=130 Identities=53% Similarity=1.039 Sum_probs=123.6
Q ss_pred HHHHHHHHHhcCCceeeeeccCCCCCCcCCcceEEEEEeecCC-CCceeEEEEecCccccceecCCCHHHHHHHhhCCCc
Q 022512 115 RKEISVRLQNVGYNCVICKSKWKSSSEIPAGNHTYLEVVEKSK-KGDVIRVVIELNFRAEFEMARASEEYNRLVNRLPEV 193 (296)
Q Consensus 115 ~r~v~~~Lr~~GydAaiCkSkW~~s~~~p~G~heyIdV~~~~~-~g~~~r~IVD~dFr~qFeIArpT~~Y~~ll~~LP~v 193 (296)
||.||++||.+||||+||||+|++++++|+|+||||||++.+. ++..+|||||+|||+||||||||++|+++|+.||.|
T Consensus 1 ~r~v~~~Lr~~Gy~AaiCkS~W~~s~~~p~G~yeyidV~~~~~~~~~~~R~iVd~dFr~~FeiARpt~~Y~~ll~~LP~v 80 (131)
T TIGR01615 1 RRIVMSLLRSLGYDAAICKSKWDSSGDIPAGKYEYIDVVDGDGSKKQEMRVIIDLDFRSEFEIARPTEEYKRLLESLPEV 80 (131)
T ss_pred ChhHHHHHHHCCCCeeeEEeecCCCCCCCCCceeeEEEEecCCCCCCcceEEEeccchhhceecCCCHHHHHHHHhCCcc
Confidence 4789999999999999999999999999999999999998643 244589999999999999999999999999999999
Q ss_pred eeeChhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHhhhcCCCCCCC
Q 022512 194 FVGKTERLKAVIKIMCAAAKKCMKEKKMHIAPWRKHKYMQAKWLGGYQRPT 244 (296)
Q Consensus 194 fVG~~erL~~iV~~mc~Aak~S~k~~gm~lPPWRk~~ym~aKWl~~~~R~~ 244 (296)
|||+.++|++||++||+|||+|||++|||||||||++|||+|||+||+|++
T Consensus 81 FVG~~~rL~~iV~~mc~Aak~Slk~~gmhlPPWRk~~ym~aKWl~~~~R~~ 131 (131)
T TIGR01615 81 FVGTTERLRQLVRLMCDAAKKSLKKKGMPLPPWRKNRYMQSKWLGPYKRTS 131 (131)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHhccCCccCCC
Confidence 999999999999999999999999999999999999999999999999953
No 3
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=93.18 E-value=0.26 Score=44.18 Aligned_cols=60 Identities=18% Similarity=0.368 Sum_probs=44.2
Q ss_pred CCcchhhHHHHHHHHHhcCCceeeeecc--CCCCCC-cCCcceEEEEEeecCCCCceeEEEEecCcccc
Q 022512 108 GGCRTCMRKEISVRLQNVGYNCVICKSK--WKSSSE-IPAGNHTYLEVVEKSKKGDVIRVVIELNFRAE 173 (296)
Q Consensus 108 ~~c~~~~~r~v~~~Lr~~GydAaiCkSk--W~~s~~-~p~G~heyIdV~~~~~~g~~~r~IVD~dFr~q 173 (296)
|-| -=+-..+...|+++||++.++.++ +..... .+.+.|--|.|.+. | .+|+||+.|=..
T Consensus 47 G~C-~elN~lf~~lL~~lGf~v~~~~arv~~~~~~~~~~~~~H~~liV~~~---~--~~ylvDvGfG~~ 109 (240)
T PF00797_consen 47 GYC-FELNGLFYWLLRELGFDVTLVSARVYSPGGPDYWPPRTHLVLIVTLD---G--ERYLVDVGFGGP 109 (240)
T ss_dssp B-H-HHHHHHHHHHHHHCT-EEEEEEEEEETTTTTCCSSSEEEEEEEEEET---T--EEEEE-SSSTTC
T ss_pred eEh-HHHHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCceEEEEEEEC---C--EEEEEeccCCCc
Confidence 334 445678899999999999998876 444333 57889999999884 4 499999999876
No 4
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=88.73 E-value=1.2 Score=42.36 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCCceeeeecc--CCCCCCcCCcceEEEEEeecCCCCceeEEEEecCccc
Q 022512 114 MRKEISVRLQNVGYNCVICKSK--WKSSSEIPAGNHTYLEVVEKSKKGDVIRVVIELNFRA 172 (296)
Q Consensus 114 ~~r~v~~~Lr~~GydAaiCkSk--W~~s~~~p~G~heyIdV~~~~~~g~~~r~IVD~dFr~ 172 (296)
+-..+...|+++||++.....+ |...+..++..|-.+.|.+. |+ +|+||+.|-+
T Consensus 72 ~N~Lf~~~L~~LGF~v~~~~arV~~~~~~~~~~~tH~~l~V~i~---~~--~yLvDVGFG~ 127 (281)
T PRK15047 72 QNGLFERVLRELGFNVRSLLGRVVLSNPPALPPRTHRLLLVELE---GE--KWIADVGFGG 127 (281)
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEEecCCCCCCCcCcEEEEEEEC---Ce--eEEEEecCCC
Confidence 4567888999999999875554 55444557779999999984 43 9999999986
No 5
>PF08742 C8: C8 domain; InterPro: IPR014853 The proteins in this entry contained a domain rich in positionally conserved cysteine residues. Most proteins contains 7 or 8 cysteine residues. The domain is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing IPR001846 from INTERPRO and IPR002919 from INTERPRO.
Probab=84.32 E-value=1 Score=33.77 Aligned_cols=62 Identities=15% Similarity=0.373 Sum_probs=44.4
Q ss_pred EEEecCccccceecCCCHHHHHHHhhCCCceeeChhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCch
Q 022512 164 VVIELNFRAEFEMARASEEYNRLVNRLPEVFVGKTERLKAVIKIMCAAAKKCMKEKKMHIAPWRKHK 230 (296)
Q Consensus 164 ~IVD~dFr~qFeIArpT~~Y~~ll~~LP~vfVG~~erL~~iV~~mc~Aak~S~k~~gm~lPPWRk~~ 230 (296)
+|.|+.|+.=+.+.-|++-|...+..+=. +-|.. ..+-..|.+-++.+ +..|..+++||+..
T Consensus 10 ~l~~~~F~~C~~~v~~~~f~~~C~~d~C~-~~~~~---~~~C~~l~~Ya~~C-~~~g~~~~~WR~~~ 71 (74)
T PF08742_consen 10 ILLDPEFAPCHSVVDPDPFYEACVYDMCA-CPGSQ---QCLCEALSAYAREC-QRAGICVGDWRTPT 71 (74)
T ss_pred HHcCchhhhhcccCccHHHHHHHHHHHcC-CCCCc---chhhHHHHHHHHHH-HHCcCCCCCCCCcC
Confidence 45688899999999999999999966543 22222 33444455555555 77899999999864
No 6
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=72.24 E-value=4.3 Score=28.89 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCCCCCC
Q 022512 207 IMCAAAKKCMKEKKMHIAPW 226 (296)
Q Consensus 207 ~mc~Aak~S~k~~gm~lPPW 226 (296)
++|.++.+-.+++|.++|+|
T Consensus 21 ~v~r~l~~yY~~k~~~~P~W 40 (41)
T PF14475_consen 21 HVHRVLRKYYTEKGRPFPGW 40 (41)
T ss_pred HHHHHHHHHHHHcCCCCCCc
Confidence 67999999999999999999
No 7
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=68.87 E-value=31 Score=24.42 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=39.6
Q ss_pred CCcchhhHHHHHHHHHhcCCceeeeecc-CCCCCC----cCCcceEEEEEeecCCCCceeEEEEecC
Q 022512 108 GGCRTCMRKEISVRLQNVGYNCVICKSK-WKSSSE----IPAGNHTYLEVVEKSKKGDVIRVVIELN 169 (296)
Q Consensus 108 ~~c~~~~~r~v~~~Lr~~GydAaiCkSk-W~~s~~----~p~G~heyIdV~~~~~~g~~~r~IVD~d 169 (296)
|.| .-.-..++..||.+|+.|.++... +..... -+...|.++.|-+. + .-+.+||.
T Consensus 7 G~C-~~~a~l~~~llr~~GIpar~v~g~~~~~~~~~~~~~~~~~H~W~ev~~~---~--~W~~~D~~ 67 (68)
T smart00460 7 GTC-GEFAALFVALLRSLGIPARVVSGYLKAPDTIGGLRSIWEAHAWAEVYLE---G--GWVPVDPT 67 (68)
T ss_pred eee-HHHHHHHHHHHHHCCCCeEEEeeeecCCCCCcccccCCCcEEEEEEEEC---C--CeEEEeCC
Confidence 445 335667888999999999998763 332222 24678999999874 3 38889985
No 8
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=62.92 E-value=75 Score=27.61 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhcCCceeee----ec----cCCCCCCcCCcceEEEEEeecCCCCceeEEEEec
Q 022512 114 MRKEISVRLQNVGYNCVIC----KS----KWKSSSEIPAGNHTYLEVVEKSKKGDVIRVVIEL 168 (296)
Q Consensus 114 ~~r~v~~~Lr~~GydAaiC----kS----kW~~s~~~p~G~heyIdV~~~~~~g~~~r~IVD~ 168 (296)
|.+..-+.|++.||+-.+- +. |+=+.--+|+|+|+.+-|++....|..-..|+=|
T Consensus 57 Ie~~A~~~l~~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~YeAlrI~IG~g~G~NWWCVLfP 119 (130)
T PF09551_consen 57 IEQIAEEVLAEEGYDYPVKVELGRFYFPTKTYGDIVLPAGEYEALRITIGEGKGHNWWCVLFP 119 (130)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEeeeCCCceECCEeccCCceEEEEEEecCccCcceEEEecC
Confidence 4556667788889764442 22 2334557899999999999976566644444433
No 9
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=59.97 E-value=13 Score=29.19 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.3
Q ss_pred CCcchhhHHHHHHHHHhcCCceeeeeccC
Q 022512 108 GGCRTCMRKEISVRLQNVGYNCVICKSKW 136 (296)
Q Consensus 108 ~~c~~~~~r~v~~~Lr~~GydAaiCkSkW 136 (296)
++--+-.++...+.|+..|+++.||.+.|
T Consensus 72 ~~~ls~~Q~~~~~~l~~~G~~v~V~~~~~ 100 (100)
T PF08774_consen 72 GDRLSPNQKEWIDKLREAGFRVAVCRSVE 100 (100)
T ss_pred CCCcCHHHHHHHHHHHHCCCEEEEEEccC
Confidence 34446667888899999999999999987
No 10
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=53.43 E-value=22 Score=27.42 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=36.2
Q ss_pred CCcchhhHHHHHHHHHhcCCceeeeeccCCCC------CCcCCcceEEEEEeecCCCCceeEEEEec
Q 022512 108 GGCRTCMRKEISVRLQNVGYNCVICKSKWKSS------SEIPAGNHTYLEVVEKSKKGDVIRVVIEL 168 (296)
Q Consensus 108 ~~c~~~~~r~v~~~Lr~~GydAaiCkSkW~~s------~~~p~G~heyIdV~~~~~~g~~~r~IVD~ 168 (296)
|.| .-+-..++..||.+|+.|.+........ .......|-...|-++ .+ ..+.+||
T Consensus 52 G~C-~~~a~l~~allr~~Gipar~v~g~~~~~~~~~~~~~~~~~~H~w~ev~~~--~~--~W~~~Dp 113 (113)
T PF01841_consen 52 GDC-EDYASLFVALLRALGIPARVVSGYVKGPDPDGDYSVDGNDNHAWVEVYLP--GG--GWIPLDP 113 (113)
T ss_dssp ESH-HHHHHHHHHHHHHHT--EEEEEEEEEECSSTTCTSTSSEEEEEEEEEEET--TT--EEEEEET
T ss_pred Ccc-HHHHHHHHHHHhhCCCceEEEEEEcCCccccccccCCCCCCEEEEEEEEc--CC--cEEEcCC
Confidence 344 3356688999999999998876543322 1234567999999882 23 4888887
No 11
>COG2162 NhoA Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.68 E-value=40 Score=32.75 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhcCCceee--eeccCCCCC-CcCCcceEEEEEeecCCCCceeEEEEecCccccceec
Q 022512 114 MRKEISVRLQNVGYNCVI--CKSKWKSSS-EIPAGNHTYLEVVEKSKKGDVIRVVIELNFRAEFEMA 177 (296)
Q Consensus 114 ~~r~v~~~Lr~~GydAai--CkSkW~~s~-~~p~G~heyIdV~~~~~~g~~~r~IVD~dFr~qFeIA 177 (296)
+--.+..-|+++||+... |+-.|...+ ..|.+.|.=|-|.+. + .-+|+|..|=.+--.|
T Consensus 73 lNglf~~vL~~lGF~v~~l~arV~~g~~~~a~~~~tH~~L~v~~~---~--~~~l~DvGFGg~~l~A 134 (275)
T COG2162 73 LNGLFGRVLRELGFNVRLLLARVVWGLAPDALPPRTHRLLLVELE---G--ETWLADVGFGGQTLTA 134 (275)
T ss_pred hhhHHHHHHHHcCCcceeeEEEEEecCCCCCCCcccceEEEEEec---C--ceeEEecCCCCCCcCC
Confidence 455677789999999987 888899875 456799999999985 3 3899999999776666
No 12
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=42.63 E-value=1.3e+02 Score=28.23 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCceeeChhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 022512 182 EYNRLVNRLPEVFVGKTERLKAVIKIMCAAAKKCMKEKKMHIAPWRK 228 (296)
Q Consensus 182 ~Y~~ll~~LP~vfVG~~erL~~iV~~mc~Aak~S~k~~gm~lPPWRk 228 (296)
..+++++.+=--|+|..-+-.++- .==..+|+-|++.|.+.|||+-
T Consensus 73 ~i~~~le~~gip~~Gs~~~a~~l~-~DK~~~k~~l~~~gIptp~~~~ 118 (296)
T PRK14569 73 RVSALLEMLEIKHTSSSMKSSVIT-MDKMISKEILMHHRMPTPMAKF 118 (296)
T ss_pred HHHHHHHHcCCCeeCCCHHHHHHH-HCHHHHHHHHHHCCCCCCCeEE
Confidence 356788777777888664332221 1113567789999999999964
No 13
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=36.07 E-value=1.7e+02 Score=27.03 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCceeeeeccCCCCC---CcCCcce------EEEEEeecCCCCceeEEEEecCccccceecCCCHHHHH
Q 022512 115 RKEISVRLQNVGYNCVICKSKWKSSS---EIPAGNH------TYLEVVEKSKKGDVIRVVIELNFRAEFEMARASEEYNR 185 (296)
Q Consensus 115 ~r~v~~~Lr~~GydAaiCkSkW~~s~---~~p~G~h------eyIdV~~~~~~g~~~r~IVD~dFr~qFeIArpT~~Y~~ 185 (296)
-+.|.+.|+++||++.++...-.+.. ++..--+ .-+|+++..-.|. +. ......+
T Consensus 20 ~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~-------------~~---~~~~~~~ 83 (315)
T TIGR01205 20 AAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGR-------------YG---EDGTIQG 83 (315)
T ss_pred HHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCC-------------CC---CCcHHHH
Confidence 45788999999999999877632211 1110000 1123333210010 00 0124577
Q ss_pred HHhhCCCceeeChhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 022512 186 LVNRLPEVFVGKTERLKAVIKIMCAAAKKCMKEKKMHIAPWRKH 229 (296)
Q Consensus 186 ll~~LP~vfVG~~erL~~iV~~mc~Aak~S~k~~gm~lPPWRk~ 229 (296)
+++.+---|+|.......+.. ==..+++-|++.|.++|||+..
T Consensus 84 ~le~~gip~~g~~~~~~~~~~-dK~~~~~~l~~~gip~p~~~~~ 126 (315)
T TIGR01205 84 LLELMGIPYTGSGVLASALSM-DKLLTKLLWKALGLPTPDYIVL 126 (315)
T ss_pred HHHHcCCCccCCCHHHHHHHH-CHHHHHHHHHHCCCCCCCEEEE
Confidence 888888888897533322211 1125778899999999999854
No 14
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=35.69 E-value=28 Score=29.75 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCceeeee
Q 022512 116 KEISVRLQNVGYNCVICK 133 (296)
Q Consensus 116 r~v~~~Lr~~GydAaiCk 133 (296)
..|+++||.+|||+..+.
T Consensus 10 ~~Lar~LR~lG~Dt~~~~ 27 (147)
T PF01927_consen 10 GRLARWLRLLGYDTLYSR 27 (147)
T ss_pred HHHHHHHHHCCCcEEEeC
Confidence 579999999999998665
No 15
>PRK14675 hypothetical protein; Provisional
Probab=35.12 E-value=1.7e+02 Score=24.88 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCceeeeeccCCCCCCcCCcceEEEEEeecCCCCceeEEEEecCccccceecCCCHHHHHHHhhCCCcee
Q 022512 116 KEISVRLQNVGYNCVICKSKWKSSSEIPAGNHTYLEVVEKSKKGDVIRVVIELNFRAEFEMARASEEYNRLVNRLPEVFV 195 (296)
Q Consensus 116 r~v~~~Lr~~GydAaiCkSkW~~s~~~p~G~heyIdV~~~~~~g~~~r~IVD~dFr~qFeIArpT~~Y~~ll~~LP~vfV 195 (296)
...+..|+..||.-- .-.|... |=.||++... +. .-++||+-.|..-..+.|-.. |
T Consensus 16 ~~A~~~L~~~G~~il--~rn~r~~-------~GEIDlIa~d--~~-~lvFVEVK~R~~~~~g~~~~a------------V 71 (125)
T PRK14675 16 SIAVTYLKGLRYKIV--ERNFRCR-------CGEIDIIARD--GK-TLVFVEVKTRKNYAYGVPQLA------------V 71 (125)
T ss_pred HHHHHHHHHCCCEEE--EEEEeCC-------CCeEEEEEEe--CC-EEEEEEEEeccCCCCcChHHc------------C
Confidence 367889999999753 4456543 4479999752 33 799999999976544444221 2
Q ss_pred eChhHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 022512 196 GKTERLKAVIKIMCAAAKKCMKEKKMHIAPWR 227 (296)
Q Consensus 196 G~~erL~~iV~~mc~Aak~S~k~~gm~lPPWR 227 (296)
.... . +-|..+|+.-|.++++.-.|+|
T Consensus 72 ~~~K-~----~ri~~~A~~yL~~~~~~~~~~R 98 (125)
T PRK14675 72 TPFK-Q----RQISKAALTWLAKKKLLDAEAR 98 (125)
T ss_pred CHHH-H----HHHHHHHHHHHHHCCCCCCCEE
Confidence 2111 1 1566778888888886434454
No 16
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=34.54 E-value=96 Score=30.72 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHhcCCceeeeeccCC-CCCCcCCcceEEEEEeecCCCCc--eeEEEEecCccccceecCC-------CHH
Q 022512 113 CMRKEISVRLQNVGYNCVICKSKWK-SSSEIPAGNHTYLEVVEKSKKGD--VIRVVIELNFRAEFEMARA-------SEE 182 (296)
Q Consensus 113 ~~~r~v~~~Lr~~GydAaiCkSkW~-~s~~~p~G~heyIdV~~~~~~g~--~~r~IVD~dFr~qFeIArp-------T~~ 182 (296)
-+-..++..++++||...++-+.-+ .+..+... ++|+.+.-...... ...-|+++-++.+..+--| ...
T Consensus 12 ~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~a-D~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~~ 90 (449)
T TIGR00514 12 EIALRILRACKELGIKTVAVHSTADRDALHVLLA-DEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENAN 90 (449)
T ss_pred HHHHHHHHHHHHcCCeEEEEEChhhhcccccccC-CEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccCHH
Confidence 3567889999999999999866433 22222222 33333210000000 0001222222222222221 123
Q ss_pred HHHHHhhCCCceeeChhHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 022512 183 YNRLVNRLPEVFVGKTERLKAVIKIMCAAAKKCMKEKKMHIAPWR 227 (296)
Q Consensus 183 Y~~ll~~LP~vfVG~~erL~~iV~~mc~Aak~S~k~~gm~lPPWR 227 (296)
+..+++.+--.|+|...+.-.+..= =..+|+-|++.|.+.|||-
T Consensus 91 ~a~~~e~~Gi~~~g~~~~~~~~~~D-K~~~r~~l~~~gip~pp~~ 134 (449)
T TIGR00514 91 FAEQCERSGFTFIGPSAESIRLMGD-KVSAIETMKKAGVPCVPGS 134 (449)
T ss_pred HHHHHHHCCCcEECcCHHHHHHhCC-HHHHHHHHHHCCCCCCCCc
Confidence 5677888887788876554333211 1357888999999999984
No 17
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=34.49 E-value=53 Score=34.20 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=50.6
Q ss_pred HHHHHHhcCCceeeeeccCCCCCCcCCcceEEEEEeecCCCCceeEEEEecCccccceecCCCHHHHHHHhhCCCceeeC
Q 022512 118 ISVRLQNVGYNCVICKSKWKSSSEIPAGNHTYLEVVEKSKKGDVIRVVIELNFRAEFEMARASEEYNRLVNRLPEVFVGK 197 (296)
Q Consensus 118 v~~~Lr~~GydAaiCkSkW~~s~~~p~G~heyIdV~~~~~~g~~~r~IVD~dFr~qFeIArpT~~Y~~ll~~LP~vfVG~ 197 (296)
-+..|.++|||..||.++|.-.|++-++.- ..|. ++|-.|+-=| ..|..+++.++++..+.
T Consensus 15 ~a~~La~~g~~vt~~ea~~~~GGk~~s~~~---------~dg~----~~E~glh~f~------~~Y~n~~~ll~~~~~~~ 75 (485)
T COG3349 15 AAYELADAGYDVTLYEARDRLGGKVASWRD---------SDGN----HVEHGLHVFF------GCYYNLLTLLKELPIED 75 (485)
T ss_pred HHHHHHhCCCceEEEeccCccCceeeeeec---------CCCC----eeeeeeEEec------hhHHHHHHHhhhCCchh
Confidence 467899999999999999998777665533 1232 4455555444 57999999999998885
Q ss_pred hhHHHHHHHHH
Q 022512 198 TERLKAVIKIM 208 (296)
Q Consensus 198 ~erL~~iV~~m 208 (296)
..+++..+.+.
T Consensus 76 ~~~~~~~~~~~ 86 (485)
T COG3349 76 RLQLREHTKTF 86 (485)
T ss_pred eeehHhhhhhh
Confidence 55555544443
No 18
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=34.33 E-value=2.1e+02 Score=26.31 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=31.0
Q ss_pred HHHHHhhCCCceeeChhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCch
Q 022512 183 YNRLVNRLPEVFVGKTERLKAVIKIMCAAAKKCMKEKKMHIAPWRKHK 230 (296)
Q Consensus 183 Y~~ll~~LP~vfVG~~erL~~iV~~mc~Aak~S~k~~gm~lPPWRk~~ 230 (296)
+.++++.+---|+|+......+.. ==..+|+-|++.|.+.|||+...
T Consensus 74 ~~~~le~~gi~~~g~~~~~~~~~~-dK~~~k~~l~~~gIp~p~~~~~~ 120 (304)
T PRK01372 74 IQGLLELLGIPYTGSGVLASALAM-DKLRTKLVWQAAGLPTPPWIVLT 120 (304)
T ss_pred HHHHHHHcCCCccCCCHHHHHHHh-CHHHHHHHHHHCCCCCCCEEEEe
Confidence 456788887778888533222211 01256777999999999998543
No 19
>PRK08462 biotin carboxylase; Validated
Probab=33.77 E-value=1.2e+02 Score=29.88 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHhcCCceeeeeccCCCC-CCcCCcceEEEEEeecCCCCceeEE-----EEecCccccceecCCC------
Q 022512 113 CMRKEISVRLQNVGYNCVICKSKWKSS-SEIPAGNHTYLEVVEKSKKGDVIRV-----VIELNFRAEFEMARAS------ 180 (296)
Q Consensus 113 ~~~r~v~~~Lr~~GydAaiCkSkW~~s-~~~p~G~heyIdV~~~~~~g~~~r~-----IVD~dFr~qFeIArpT------ 180 (296)
-+.-.++..+|++||.+..|-|.-+.. +.+... ++++.+-.. .....| |+++--+.+....-|+
T Consensus 14 ~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~a-d~~~~~~~~---~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse 89 (445)
T PRK08462 14 EIALRAIRTIQEMGKEAIAIYSTADKDALYLKYA-DAKICIGGA---KSSESYLNIPAIISAAEIFEADAIFPGYGFLSE 89 (445)
T ss_pred HHHHHHHHHHHHcCCCEEEEechhhcCCchhhhC-CEEEEeCCC---chhcccCCHHHHHHHHHHcCCCEEEECCCcccc
Confidence 346689999999999999987765543 222222 333333100 000111 1222222222222222
Q ss_pred -HHHHHHHhhCCCceeeChhHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 022512 181 -EEYNRLVNRLPEVFVGKTERLKAVIKIMCAAAKKCMKEKKMHIAPWR 227 (296)
Q Consensus 181 -~~Y~~ll~~LP~vfVG~~erL~~iV~~mc~Aak~S~k~~gm~lPPWR 227 (296)
.....+++.+--.|+|+..+...+..= =..+|+-|++.|.+.|||.
T Consensus 90 ~~~~a~~~e~~Gi~~~g~~~~~~~~~~d-K~~~r~~l~~~gIp~pp~~ 136 (445)
T PRK08462 90 NQNFVEICSHHNIKFIGPSVEVMALMSD-KSKAKEVMKRAGVPVIPGS 136 (445)
T ss_pred CHHHHHHHHHCCCeEECcCHHHHHHhCC-HHHHHHHHHHCCCCCCCCc
Confidence 344456777777788877654333211 1367888999999999985
No 20
>PRK10556 hypothetical protein; Provisional
Probab=33.68 E-value=67 Score=27.18 Aligned_cols=77 Identities=17% Similarity=0.364 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCceeeeeccCCCCCCcCCcceEEEEEeecCCCCceeEEEEecCccccc-eecCCCHHHHHH--HhhCCC
Q 022512 116 KEISVRLQNVGYNCVICKSKWKSSSEIPAGNHTYLEVVEKSKKGDVIRVVIELNFRAEF-EMARASEEYNRL--VNRLPE 192 (296)
Q Consensus 116 r~v~~~Lr~~GydAaiCkSkW~~s~~~p~G~heyIdV~~~~~~g~~~r~IVD~dFr~qF-eIArpT~~Y~~l--l~~LP~ 192 (296)
.+|++-|..+||.--.-..+ +-++..|+| |+-|.-+..-|. ..+||.|.+++.= -.|.||..-+.. -..+|-
T Consensus 6 DEVArVLe~aGF~~D~vt~~---aYGyrrge~-YVYVNREaRmGR-TALvIHP~lkerS~~fa~Pas~~k~~~~Y~~FPl 80 (111)
T PRK10556 6 DEVARVLEKAGFTVDVVTQK---AYGYRRGEN-YVYVNREARMGR-TALVIHPTLKERSSTLAEPASDIKTCDHYQQFPL 80 (111)
T ss_pred HHHHHHHHhcCceEEEeech---hcceecCCc-eEEEchhhhcCc-eeEEechhHhhhhhcccCccchhccchhhhcccc
Confidence 38999999999976543332 456677766 777775544455 7899999998753 356666543322 134555
Q ss_pred ceeeC
Q 022512 193 VFVGK 197 (296)
Q Consensus 193 vfVG~ 197 (296)
-..|.
T Consensus 81 yl~g~ 85 (111)
T PRK10556 81 YLAGE 85 (111)
T ss_pred ccccC
Confidence 54443
No 21
>COG5005 Mu-like prophage protein gpG [General function prediction only]
Probab=31.13 E-value=48 Score=29.20 Aligned_cols=60 Identities=23% Similarity=0.363 Sum_probs=47.1
Q ss_pred HHHHHHHhhCCCceeeChhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchH-HHhhhcCCCCC
Q 022512 181 EEYNRLVNRLPEVFVGKTERLKAVIKIMCAAAKKCMKEKKMHIAPWRKHKY-MQAKWLGGYQR 242 (296)
Q Consensus 181 ~~Y~~ll~~LP~vfVG~~erL~~iV~~mc~Aak~S~k~~gm~lPPWRk~~y-m~aKWl~~~~R 242 (296)
..-.+-|.+|-.+.=|+.+=.+.|-..|-.|++..|..-|.+ -|++.+| +.-|=|.-..|
T Consensus 10 ~~i~~~~~~laq~~~~rk~Lmr~vA~~m~sav~~nF~~~grP--~w~~~Ky~r~Gk~L~~~Gr 70 (140)
T COG5005 10 STIQQKLEALAQVTDGRKDLMRSVAGTMRSAVEKNFELEGRP--KWKKRKYGRTGKILQDSGR 70 (140)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCc--chhhcccCCCCCceeecch
Confidence 344555666666777787888999999999999999999975 9999999 77776654444
No 22
>smart00832 C8 C8 domain. This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin.
Probab=31.10 E-value=40 Score=25.96 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=41.3
Q ss_pred EEEEec--CccccceecCCCHHHHHHHhhCCCceeeChhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCch
Q 022512 163 RVVIEL--NFRAEFEMARASEEYNRLVNRLPEVFVGKTERLKAVIKIMCAAAKKCMKEKKMHIAPWRKHK 230 (296)
Q Consensus 163 r~IVD~--dFr~qFeIArpT~~Y~~ll~~LP~vfVG~~erL~~iV~~mc~Aak~S~k~~gm~lPPWRk~~ 230 (296)
.+|.++ -|+.--.+=-|++-|+..+.-+=.. -|..+.|-.. |.+-++.+. +.|..+.+||+..
T Consensus 9 ~~l~~~~g~F~~Ch~~V~p~~f~~~Cv~D~C~~-~~~~~~lC~a---l~aYa~aC~-~~Gv~v~~WR~~~ 73 (76)
T smart00832 9 GILLSPRGPFAACHSVVDPEPFFENCVYDTCAC-GGDCECLCDA---LAAYAAACA-EAGVCISPWRTPT 73 (76)
T ss_pred HhhcCCCCChHHHhCcCChHHHHHHHHHHHhCC-CCCCcccCHH---HHHHHHHHH-HCcCcCCCCCCCC
Confidence 455666 3777777778999999999655322 2444444443 334444444 5899999999875
No 23
>PF15645 Tox-PLDMTX: Dermonecrotoxin of the Papain-like fold
Probab=31.09 E-value=1.3e+02 Score=26.31 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=49.0
Q ss_pred CCcchhhHHHHHHHHHhcCC-ceeeee-ccCCCCCCcCCcceEEEEEeecCCCCceeEEEEecCccccceecCCCHHHHH
Q 022512 108 GGCRTCMRKEISVRLQNVGY-NCVICK-SKWKSSSEIPAGNHTYLEVVEKSKKGDVIRVVIELNFRAEFEMARASEEYNR 185 (296)
Q Consensus 108 ~~c~~~~~r~v~~~Lr~~Gy-dAaiCk-SkW~~s~~~p~G~heyIdV~~~~~~g~~~r~IVD~dFr~qFeIArpT~~Y~~ 185 (296)
+.|.+ ..+.|+..||..|| |.-+.. .-|+.......-+|-=+.+... | .-|||||--. ||.=--.
T Consensus 5 ~~C~~-a~~~v~~~lk~~g~~~~k~~~l~~W~~~~~~~p~NH~vv~~k~~---g--~eyV~D~Ta~-QF~~~~~------ 71 (135)
T PF15645_consen 5 EQCES-AMKEVADFLKDKGYEDIKYRGLLIWENANDDSPTNHFVVVAKKN---G--KEYVFDPTAH-QFSNKGN------ 71 (135)
T ss_pred HHHHH-HHHHHHHHHHhCCCCcceeeEEEEecCCCccCCcceEEEEEEEC---C--EEEEEeCcHH-HhhccCC------
Confidence 34543 46789999999999 433321 2397777777777754444442 4 5999999642 4431111
Q ss_pred HHhhCC-CceeeChhHHH
Q 022512 186 LVNRLP-EVFVGKTERLK 202 (296)
Q Consensus 186 ll~~LP-~vfVG~~erL~ 202 (296)
+ .+|+|+.+.=.
T Consensus 72 -----~~~p~i~~~~~W~ 84 (135)
T PF15645_consen 72 -----DNGPIILPEDAWK 84 (135)
T ss_pred -----CCCceEecHHHHH
Confidence 2 68999888655
No 24
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=27.17 E-value=54 Score=27.89 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCceeeeeccCCCCCCcCCcceEEEEEeecCCCCceeEEEEecCcccc-ceecCCCH
Q 022512 116 KEISVRLQNVGYNCVICKSKWKSSSEIPAGNHTYLEVVEKSKKGDVIRVVIELNFRAE-FEMARASE 181 (296)
Q Consensus 116 r~v~~~Lr~~GydAaiCkSkW~~s~~~p~G~heyIdV~~~~~~g~~~r~IVD~dFr~q-FeIArpT~ 181 (296)
.+|++-|...||.--.-..+ +-++..|+| |+-|.-+..-|. ..+||-|.|++. -+.|.||.
T Consensus 6 deva~vle~~gf~~d~v~~~---aygyrrg~~-YvYVNrearmgR-TALVIHP~lk~rS~~fa~pt~ 67 (111)
T PF09400_consen 6 DEVARVLEKAGFERDYVTDK---AYGYRRGEH-YVYVNREARMGR-TALVIHPALKERSLEFAEPTS 67 (111)
T ss_dssp HHHHHHHHHTT-EEEEEETT---EEEEEETTE-EEEEETT-SSTT-S-EE--SS-HHHHHHHS-BSS
T ss_pred HHHHHHHHhcCceEEEeecc---ccceecCce-EEEEechhcCCc-eeEEEcchHHHhhhcccCcch
Confidence 48999999999976554433 445666665 777775544454 689999999864 23466654
No 25
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=27.03 E-value=3.9e+02 Score=25.46 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=32.4
Q ss_pred HHHHHHhhCCCceeeChhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 022512 182 EYNRLVNRLPEVFVGKTERLKAVIKIMCAAAKKCMKEKKMHIAPWRKH 229 (296)
Q Consensus 182 ~Y~~ll~~LP~vfVG~~erL~~iV~~mc~Aak~S~k~~gm~lPPWRk~ 229 (296)
..+++++.+---|+|....-..+. .==..+|+-|++.|.++|||...
T Consensus 98 ~iq~lle~~gipy~G~~~~a~~l~-~DK~~~k~~l~~~GIp~p~~~~~ 144 (333)
T PRK01966 98 TIQGLLELLGIPYVGCGVLASALS-MDKILTKRLLAAAGIPVAPYVVL 144 (333)
T ss_pred HHHHHHHHcCCCccCCCHHHHHHH-hCHHHHHHHHHHcCCCCCCEEEE
Confidence 467888888888999763321111 11135788899999999999653
No 26
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=26.72 E-value=17 Score=34.98 Aligned_cols=52 Identities=19% Similarity=0.433 Sum_probs=40.3
Q ss_pred HHHHHHHhhCCCceeeChhHHHHHHHH-----HHHHHHHHHHhcCCCCCCCCCchHHH
Q 022512 181 EEYNRLVNRLPEVFVGKTERLKAVIKI-----MCAAAKKCMKEKKMHIAPWRKHKYMQ 233 (296)
Q Consensus 181 ~~Y~~ll~~LP~vfVG~~erL~~iV~~-----mc~Aak~S~k~~gm~lPPWRk~~ym~ 233 (296)
+.|...|+.||.+-.+ .-.|..-|.+ +.++.++.+......+.||||-.|-.
T Consensus 40 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pwrkg~~~~ 96 (322)
T PRK15068 40 KKWEKALEQLPELTPD-RLDLLDSVTIGSEEPLSEGQRKRIENLLRALMPWRKGPFSL 96 (322)
T ss_pred HHHHHHHHhccCCCcc-eeccCCceEeccCCCCCHHHHHHHHHHHHhhcCcccCCccc
Confidence 7799999999986433 2345555544 58888899999999999999998765
No 27
>PHA01753 Holliday junction resolvase
Probab=26.43 E-value=2.1e+02 Score=24.60 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCceeeeeccCCCCCCcCCcceEEEEEeecCCCCceeEEEEecCcccc
Q 022512 115 RKEISVRLQNVGYNCVICKSKWKSSSEIPAGNHTYLEVVEKSKKGDVIRVVIELNFRAE 173 (296)
Q Consensus 115 ~r~v~~~Lr~~GydAaiCkSkW~~s~~~p~G~heyIdV~~~~~~g~~~r~IVD~dFr~q 173 (296)
-+.+++.|+..|| .+-...|..++ .+--||++.. .|. .-++||+-.|..
T Consensus 11 E~~a~~~L~~~G~--~il~rn~~~~~-----~~GEiDIIA~--~~~-~lvfVEVKtR~~ 59 (121)
T PHA01753 11 EYKTLEILESNGF--KALRIPVSGTG-----KQALPDIIAT--KNN-TIYPIEVKSTSK 59 (121)
T ss_pred HHHHHHHHHHCCC--EEEEeccccCC-----CCCCccEEEe--eCC-EEEEEEEEeCCC
Confidence 5689999999999 45566666542 2447899974 233 689999998865
No 28
>cd00523 archeal_HJR Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain eukaryotes, however this CD includes only the archeal HJR's. The bacterial and archeal HJRs perform a similar function but differ in both sequence and structure. Structural similarity does however, exist between the archeal HJRs and type II restriction endonucleases, such as EcoRV, BglII, and Fok, and this similarity includes their active site configurations.
Probab=26.02 E-value=2.4e+02 Score=23.93 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCceeeeeccCCCCCCcCCcceEEEEEeecCCCCceeEEEEecCcccc
Q 022512 115 RKEISVRLQNVGYNCVICKSKWKSSSEIPAGNHTYLEVVEKSKKGDVIRVVIELNFRAE 173 (296)
Q Consensus 115 ~r~v~~~Lr~~GydAaiCkSkW~~s~~~p~G~heyIdV~~~~~~g~~~r~IVD~dFr~q 173 (296)
=+.+++.|+..||..- ++..+++ |.+-.||++.. .+ +.-++||+-.|..
T Consensus 9 E~~a~~~L~~~G~~vl----R~~~sG~---~~~~eiDIIA~--~~-~~lvfVEVK~r~~ 57 (123)
T cd00523 9 ERELVKILEEKGFAVV----RAPGSGG---GPRPLPDIVAG--NG-GTYLAIEVKSTKK 57 (123)
T ss_pred HHHHHHHHHhCCCEEE----EEcCCCC---CCCCceeEEEe--cC-CEEEEEEEEecCC
Confidence 5689999999999987 2222322 23567899985 23 3689999998875
No 29
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=23.99 E-value=53 Score=24.92 Aligned_cols=20 Identities=20% Similarity=0.605 Sum_probs=13.4
Q ss_pred chhhHHHHHHHHHhcCCcee
Q 022512 111 RTCMRKEISVRLQNVGYNCV 130 (296)
Q Consensus 111 ~~~~~r~v~~~Lr~~GydAa 130 (296)
+..+++.|+..|+..||+++
T Consensus 5 ~~~l~~~va~il~~~GF~~~ 24 (77)
T PF07524_consen 5 RSLLRRSVAQILKHAGFDSA 24 (77)
T ss_pred HHHHHHHHHHHHHHcCcccc
Confidence 35567777777777777753
No 30
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=23.70 E-value=17 Score=27.50 Aligned_cols=24 Identities=42% Similarity=0.789 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhcCC--ceeeeeccCC
Q 022512 114 MRKEISVRLQNVGY--NCVICKSKWK 137 (296)
Q Consensus 114 ~~r~v~~~Lr~~Gy--dAaiCkSkW~ 137 (296)
+=..|+..|...|| ++.-|+.||.
T Consensus 36 ~w~~Ia~~l~~~G~~rt~~qc~~Kw~ 61 (90)
T PF13837_consen 36 VWKEIAEELAEHGYNRTPEQCRNKWK 61 (90)
T ss_dssp HHHHHHHHHHHHC----HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45679999999999 6777999997
No 31
>PF12852 Cupin_6: Cupin
Probab=23.58 E-value=1e+02 Score=26.45 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=31.1
Q ss_pred ccceecCCCHHHHHHHhhCCCceee-----ChhHHHHHHHHHHHHHHH
Q 022512 172 AEFEMARASEEYNRLVNRLPEVFVG-----KTERLKAVIKIMCAAAKK 214 (296)
Q Consensus 172 ~qFeIArpT~~Y~~ll~~LP~vfVG-----~~erL~~iV~~mc~Aak~ 214 (296)
.+|++..+.. ..+++.||++++= ..+.|..++++|-.++.+
T Consensus 115 g~~~~~~~~~--~~Ll~~LP~~i~i~~~~~~~~~L~~~l~~l~~E~~~ 160 (186)
T PF12852_consen 115 GRFEFDPGAA--HPLLAALPPVIHIRADDAAAPWLAALLALLRSESAQ 160 (186)
T ss_pred EEEEECCccc--chhHhhCCCeEEEecCCCCchhHHHHHHHHHHHHhc
Confidence 4566665554 6799999987665 678899999999887654
No 32
>PRK05586 biotin carboxylase; Validated
Probab=22.55 E-value=1.7e+02 Score=29.06 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHHHhhCCCceeeChhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 022512 182 EYNRLVNRLPEVFVGKTERLKAVIKIMCAAAKKCMKEKKMHIAPW 226 (296)
Q Consensus 182 ~Y~~ll~~LP~vfVG~~erL~~iV~~mc~Aak~S~k~~gm~lPPW 226 (296)
.-..+++.+--.|+|+..+.-.+..= =..+|+-|++.|.++|||
T Consensus 90 ~~a~~~~~~gi~~~g~s~~~~~~~~D-K~~~k~~l~~~GIpvp~~ 133 (447)
T PRK05586 90 KFAKMCKECNIVFIGPDSETIELMGN-KSNAREIMIKAGVPVVPG 133 (447)
T ss_pred HHHHHHHHCCCcEECcCHHHHHhhCC-HHHHHHHHHHCCCCCCCC
Confidence 44566777777788877654443321 146788899999999998
No 33
>PHA02119 hypothetical protein
Probab=22.45 E-value=53 Score=26.33 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHhcCCcee
Q 022512 112 TCMRKEISVRLQNVGYNCV 130 (296)
Q Consensus 112 ~~~~r~v~~~Lr~~GydAa 130 (296)
.-..|-+++.||.+||++.
T Consensus 53 ~i~~~divdylr~lgy~~~ 71 (87)
T PHA02119 53 AIMPKDIVDYLRSLGYDAK 71 (87)
T ss_pred ccccHHHHHHHHHccchhc
Confidence 4457899999999999983
No 34
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=20.81 E-value=69 Score=24.56 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=15.5
Q ss_pred cchhhHHHHHHHHHhcCCcee
Q 022512 110 CRTCMRKEISVRLQNVGYNCV 130 (296)
Q Consensus 110 c~~~~~r~v~~~Lr~~GydAa 130 (296)
++..+|+.|+.-|+..||+..
T Consensus 4 ~~~ll~~~Vaqil~~~Gf~~~ 24 (77)
T smart00576 4 AFALLRIAVAQILESAGFDSF 24 (77)
T ss_pred HHHHHHHHHHHHHHHcCcccc
Confidence 346677788888888888764
No 35
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=20.77 E-value=2.4e+02 Score=21.65 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=23.3
Q ss_pred CCcCCcceEEEEEeecCCCCc---eeEEEEecCccccceecCCCHHHHHHH
Q 022512 140 SEIPAGNHTYLEVVEKSKKGD---VIRVVIELNFRAEFEMARASEEYNRLV 187 (296)
Q Consensus 140 ~~~p~G~heyIdV~~~~~~g~---~~r~IVD~dFr~qFeIArpT~~Y~~ll 187 (296)
-++|.|.|.=+.|.+...+|+ ..-||..+. ...+|+.+|..++
T Consensus 21 Eg~~~g~Y~~~~v~V~~~~g~~~~a~tY~~~~~-----~~~~Ps~~Yl~~i 66 (83)
T PF13772_consen 21 EGVPIGAYRRIEVTVSTADGKPVEAFTYVANPK-----PEGPPSDRYLDLI 66 (83)
T ss_dssp TTTTTTSEEEEEEEEEETTCEEEEEEEEEESSE-----EE----HHHHHHH
T ss_pred cCCCCCCEEEEEEEEEcCCCCEEEEEEEEcCCC-----CCCCCCHHHHHHH
Confidence 356677666666655444453 345555553 3388999998776
Done!