Query 022513
Match_columns 296
No_of_seqs 344 out of 2105
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:06:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 4.2E-29 9E-34 238.6 21.5 283 10-294 32-347 (571)
2 COG3104 PTR2 Dipeptide/tripept 99.9 1.6E-26 3.6E-31 212.1 15.2 192 11-223 17-212 (498)
3 PRK10207 dipeptide/tripeptide 99.9 1.4E-24 3E-29 206.2 21.8 190 9-220 8-197 (489)
4 TIGR00924 yjdL_sub1_fam amino 99.9 5.1E-23 1.1E-27 195.0 21.2 191 9-221 4-196 (475)
5 PRK15462 dipeptide/tripeptide 99.9 4.3E-22 9.2E-27 187.8 20.9 189 10-220 4-192 (493)
6 TIGR00926 2A1704 Peptide:H+ sy 99.9 2.3E-22 4.9E-27 195.6 15.8 195 29-237 1-202 (654)
7 PRK09584 tppB putative tripept 99.9 4.5E-21 9.7E-26 182.9 21.1 185 11-217 17-201 (500)
8 PRK10642 proline/glycine betai 99.8 3.8E-17 8.3E-22 155.6 18.7 222 13-260 248-474 (490)
9 COG2814 AraJ Arabinose efflux 99.8 1E-16 2.2E-21 145.9 19.2 204 9-239 7-210 (394)
10 PRK10054 putative transporter; 99.7 1E-16 2.2E-21 148.6 18.8 172 13-211 5-176 (395)
11 PRK10213 nepI ribonucleoside t 99.7 1.2E-16 2.6E-21 148.0 19.0 176 8-210 13-188 (394)
12 TIGR02332 HpaX 4-hydroxyphenyl 99.7 7.8E-17 1.7E-21 150.2 17.6 173 10-209 3-181 (412)
13 PRK03545 putative arabinose tr 99.7 1.2E-16 2.6E-21 147.6 18.7 174 12-212 6-179 (390)
14 PRK12382 putative transporter; 99.7 2.8E-16 6.1E-21 145.0 19.5 175 13-205 13-187 (392)
15 KOG1330 Sugar transporter/spin 99.7 4.7E-18 1E-22 154.8 7.4 176 13-215 31-207 (493)
16 PF07690 MFS_1: Major Facilita 99.7 2.1E-16 4.6E-21 142.5 17.5 165 22-212 3-167 (352)
17 PRK11646 multidrug resistance 99.7 2.7E-16 5.8E-21 146.0 18.6 167 18-211 13-179 (400)
18 PRK05122 major facilitator sup 99.7 4.8E-16 1E-20 143.8 19.2 177 14-208 14-190 (399)
19 TIGR00891 2A0112 putative sial 99.7 4E-16 8.7E-21 143.6 18.6 175 8-209 5-181 (405)
20 PRK10504 putative transporter; 99.7 3.6E-16 7.8E-21 147.8 18.0 180 13-219 8-187 (471)
21 TIGR01299 synapt_SV2 synaptic 99.7 1.9E-16 4.2E-21 156.1 15.8 175 34-237 185-374 (742)
22 PRK14995 methyl viologen resis 99.7 4.8E-16 1E-20 148.3 17.7 177 13-215 4-180 (495)
23 TIGR00887 2A0109 phosphate:H+ 99.7 9.1E-16 2E-20 146.5 17.8 193 13-226 14-236 (502)
24 PRK11652 emrD multidrug resist 99.7 1.6E-15 3.4E-20 140.1 18.1 173 10-209 3-175 (394)
25 PRK12307 putative sialic acid 99.7 1.8E-15 3.9E-20 141.0 18.4 172 7-205 10-181 (426)
26 PRK15403 multidrug efflux syst 99.7 2E-15 4.2E-20 140.8 18.5 152 42-219 42-193 (413)
27 TIGR00710 efflux_Bcr_CflA drug 99.7 1.8E-15 4E-20 138.5 18.1 175 13-214 3-177 (385)
28 PRK10091 MFS transport protein 99.7 1.6E-15 3.5E-20 139.8 17.4 171 15-212 3-173 (382)
29 TIGR00900 2A0121 H+ Antiporter 99.7 1.5E-15 3.4E-20 137.5 16.3 171 20-212 4-174 (365)
30 PRK11551 putative 3-hydroxyphe 99.7 2.1E-15 4.5E-20 139.7 17.2 172 12-210 12-183 (406)
31 TIGR00895 2A0115 benzoate tran 99.7 1.6E-15 3.5E-20 138.9 16.3 170 12-208 14-183 (398)
32 TIGR00711 efflux_EmrB drug res 99.7 1.6E-15 3.4E-20 143.6 15.8 169 18-213 5-173 (485)
33 PRK03893 putative sialic acid 99.7 2.8E-15 6.1E-20 142.5 17.4 175 4-205 9-183 (496)
34 PRK11663 regulatory protein Uh 99.7 4.6E-15 9.9E-20 139.2 18.2 160 23-209 31-190 (434)
35 PRK15402 multidrug efflux syst 99.7 3.9E-15 8.6E-20 138.1 17.5 174 13-213 8-184 (406)
36 PRK10406 alpha-ketoglutarate t 99.7 5.7E-15 1.2E-19 138.4 18.7 168 23-209 30-211 (432)
37 TIGR00903 2A0129 major facilit 99.7 3.2E-15 7E-20 137.4 16.1 149 36-211 11-159 (368)
38 PRK03699 putative transporter; 99.7 1.4E-14 3.1E-19 134.0 20.4 173 12-211 4-177 (394)
39 PRK10077 xylE D-xylose transpo 99.7 2.5E-15 5.4E-20 142.1 15.6 150 46-210 50-208 (479)
40 TIGR00886 2A0108 nitrite extru 99.7 7.7E-15 1.7E-19 133.7 18.2 159 17-201 3-171 (366)
41 PRK09705 cynX putative cyanate 99.6 6.8E-15 1.5E-19 136.2 16.8 151 30-208 24-175 (393)
42 TIGR00893 2A0114 d-galactonate 99.6 4.2E-15 9.2E-20 135.4 14.7 151 37-213 15-165 (399)
43 TIGR00881 2A0104 phosphoglycer 99.6 5.5E-15 1.2E-19 134.4 15.2 150 37-212 16-166 (379)
44 KOG0254 Predicted transporter 99.6 1.5E-14 3.2E-19 138.7 18.2 161 52-240 90-255 (513)
45 PRK11043 putative transporter; 99.6 1.9E-14 4.2E-19 133.2 18.1 163 24-212 12-176 (401)
46 TIGR00899 2A0120 sugar efflux 99.6 2.2E-14 4.8E-19 131.0 18.1 167 22-212 4-171 (375)
47 TIGR00890 2A0111 Oxalate/Forma 99.6 1E-14 2.2E-19 132.5 15.5 149 36-211 23-171 (377)
48 TIGR00885 fucP L-fucose:H+ sym 99.6 3.6E-14 7.8E-19 132.3 19.2 170 17-210 5-200 (410)
49 PRK09874 drug efflux system pr 99.6 4E-14 8.6E-19 130.9 19.3 173 12-212 10-188 (408)
50 cd06174 MFS The Major Facilita 99.6 3.7E-14 7.9E-19 127.4 18.1 165 20-211 4-168 (352)
51 PRK10473 multidrug efflux syst 99.6 3.5E-14 7.5E-19 131.1 18.1 166 19-211 7-172 (392)
52 TIGR00879 SP MFS transporter, 99.6 1.2E-14 2.5E-19 136.1 15.2 139 48-209 68-209 (481)
53 KOG0569 Permease of the major 99.6 1.5E-15 3.3E-20 142.0 8.7 166 54-242 63-233 (485)
54 PRK09952 shikimate transporter 99.6 3.5E-14 7.5E-19 133.4 17.9 177 13-208 20-211 (438)
55 PRK10642 proline/glycine betai 99.6 3.8E-14 8.3E-19 135.0 18.1 175 14-207 15-203 (490)
56 PRK03633 putative MFS family t 99.6 4.3E-14 9.4E-19 130.1 17.8 154 13-193 4-157 (381)
57 PRK10133 L-fucose transporter; 99.6 1.2E-13 2.6E-18 129.8 20.1 154 11-188 22-175 (438)
58 TIGR00897 2A0118 polyol permea 99.6 8.5E-14 1.8E-18 129.2 18.7 170 10-202 8-178 (402)
59 TIGR00894 2A0114euk Na(+)-depe 99.6 5.3E-14 1.1E-18 132.9 17.3 144 45-212 70-214 (465)
60 PLN00028 nitrate transmembrane 99.6 1E-13 2.2E-18 131.7 19.0 172 13-212 34-214 (476)
61 PRK11102 bicyclomycin/multidru 99.6 3.4E-14 7.3E-19 130.2 14.9 153 34-213 10-162 (377)
62 PF00854 PTR2: POT family; In 99.6 9.6E-15 2.1E-19 134.4 10.6 138 82-232 1-139 (372)
63 PRK09556 uhpT sugar phosphate 99.6 2.4E-14 5.2E-19 135.5 13.3 150 39-209 52-204 (467)
64 PRK11195 lysophospholipid tran 99.6 1.2E-13 2.7E-18 127.9 17.3 162 17-209 5-166 (393)
65 TIGR00805 oat sodium-independe 99.6 3.3E-14 7.1E-19 139.2 14.0 193 13-212 30-276 (633)
66 TIGR00892 2A0113 monocarboxyla 99.6 1.3E-13 2.8E-18 130.2 17.7 147 40-213 43-190 (455)
67 PRK11273 glpT sn-glycerol-3-ph 99.6 6.4E-14 1.4E-18 132.1 15.4 150 37-209 50-200 (452)
68 TIGR00898 2A0119 cation transp 99.6 2.6E-14 5.6E-19 136.3 12.6 157 41-226 114-275 (505)
69 TIGR00712 glpT glycerol-3-phos 99.6 4.8E-14 1E-18 132.4 13.8 152 38-212 49-201 (438)
70 COG2271 UhpC Sugar phosphate p 99.6 6.2E-14 1.3E-18 126.9 13.2 169 17-211 27-200 (448)
71 PRK15075 citrate-proton sympor 99.5 5.1E-13 1.1E-17 125.3 19.3 175 11-204 11-199 (434)
72 PRK15011 sugar efflux transpor 99.5 6.3E-13 1.4E-17 123.0 19.3 175 13-214 214-388 (393)
73 PRK09556 uhpT sugar phosphate 99.5 4.1E-13 8.9E-18 127.1 18.4 174 16-213 259-445 (467)
74 TIGR00882 2A0105 oligosacchari 99.5 6.8E-13 1.5E-17 122.8 19.2 175 16-211 3-177 (396)
75 PRK03893 putative sialic acid 99.5 9.7E-13 2.1E-17 125.1 19.0 148 33-204 293-440 (496)
76 COG2271 UhpC Sugar phosphate p 99.5 2.7E-13 5.9E-18 122.8 14.3 178 15-215 252-432 (448)
77 PRK15011 sugar efflux transpor 99.5 1.7E-12 3.7E-17 120.2 20.1 174 15-214 15-191 (393)
78 PRK15034 nitrate/nitrite trans 99.5 1.5E-12 3.3E-17 122.1 19.3 149 15-186 34-183 (462)
79 PF00083 Sugar_tr: Sugar (and 99.5 7.7E-16 1.7E-20 144.6 -2.9 162 52-236 47-213 (451)
80 PRK10489 enterobactin exporter 99.5 3.4E-13 7.3E-18 125.6 14.9 171 20-212 22-192 (417)
81 TIGR00890 2A0111 Oxalate/Forma 99.5 7.9E-13 1.7E-17 120.1 16.9 169 17-210 207-375 (377)
82 PRK09952 shikimate transporter 99.5 1.8E-12 4E-17 121.8 19.1 180 13-214 248-430 (438)
83 PRK09528 lacY galactoside perm 99.5 1.1E-12 2.5E-17 122.2 17.6 180 15-215 10-189 (420)
84 TIGR00806 rfc RFC reduced fola 99.5 1.4E-12 3E-17 121.2 17.5 148 36-211 46-197 (511)
85 TIGR00896 CynX cyanate transpo 99.5 4.4E-13 9.5E-18 122.1 13.6 146 36-209 20-167 (355)
86 cd06174 MFS The Major Facilita 99.5 2.7E-12 5.8E-17 115.3 18.1 172 16-213 176-348 (352)
87 KOG0255 Synaptic vesicle trans 99.5 3.8E-13 8.3E-18 129.0 13.3 163 44-235 111-275 (521)
88 PRK03699 putative transporter; 99.5 2.3E-12 5.1E-17 119.2 17.5 169 15-210 205-373 (394)
89 TIGR01299 synapt_SV2 synaptic 99.5 2.4E-12 5.1E-17 127.4 16.9 129 57-212 601-729 (742)
90 PRK08633 2-acyl-glycerophospho 99.5 3.4E-12 7.4E-17 133.0 19.0 154 16-192 10-165 (1146)
91 TIGR00899 2A0120 sugar efflux 99.5 4.9E-12 1.1E-16 115.5 17.8 163 24-213 208-370 (375)
92 COG2223 NarK Nitrate/nitrite t 99.4 5.6E-12 1.2E-16 114.3 17.5 185 8-218 7-194 (417)
93 PRK05122 major facilitator sup 99.4 5.3E-12 1.1E-16 116.7 17.6 161 26-215 227-387 (399)
94 TIGR00889 2A0110 nucleoside tr 99.4 3.1E-12 6.7E-17 119.6 16.1 176 20-218 213-403 (418)
95 TIGR00883 2A0106 metabolite-pr 99.4 2.5E-12 5.5E-17 117.5 15.2 169 16-206 220-390 (394)
96 PRK09705 cynX putative cyanate 99.4 1E-11 2.2E-16 115.0 19.4 177 16-219 206-383 (393)
97 TIGR00891 2A0112 putative sial 99.4 5.2E-12 1.1E-16 116.2 16.2 156 21-201 244-400 (405)
98 KOG3764 Vesicular amine transp 99.4 7.6E-13 1.7E-17 118.9 9.5 150 45-219 100-249 (464)
99 KOG2532 Permease of the major 99.4 2.9E-12 6.3E-17 120.7 13.7 147 45-215 67-214 (466)
100 PRK11663 regulatory protein Uh 99.4 8.7E-12 1.9E-16 117.0 16.9 174 17-214 245-421 (434)
101 PRK11273 glpT sn-glycerol-3-ph 99.4 6.6E-12 1.4E-16 118.4 16.0 173 16-212 254-430 (452)
102 PRK09874 drug efflux system pr 99.4 1.4E-11 3E-16 114.0 17.2 165 25-215 229-396 (408)
103 PRK03545 putative arabinose tr 99.4 3.3E-11 7.1E-16 111.3 19.6 169 20-215 210-378 (390)
104 TIGR00897 2A0118 polyol permea 99.4 2.7E-11 5.9E-16 112.4 18.9 174 16-213 223-397 (402)
105 TIGR00892 2A0113 monocarboxyla 99.4 5.2E-12 1.1E-16 119.3 14.0 173 17-213 243-417 (455)
106 PRK06814 acylglycerophosphoeth 99.4 1.8E-11 3.8E-16 127.8 19.3 144 42-208 42-186 (1140)
107 PRK11551 putative 3-hydroxyphe 99.4 2.2E-11 4.7E-16 112.8 17.5 161 23-210 228-389 (406)
108 PRK15075 citrate-proton sympor 99.4 2E-11 4.3E-16 114.5 17.2 151 22-195 245-397 (434)
109 PRK03633 putative MFS family t 99.4 2.9E-11 6.2E-16 111.4 17.9 155 29-213 214-368 (381)
110 TIGR00893 2A0114 d-galactonate 99.4 4.3E-11 9.3E-16 109.0 18.6 178 15-212 215-394 (399)
111 PF06609 TRI12: Fungal trichot 99.4 1.1E-11 2.5E-16 118.9 15.2 149 36-212 64-212 (599)
112 TIGR00880 2_A_01_02 Multidrug 99.4 2.9E-12 6.3E-17 99.7 9.2 129 59-213 6-134 (141)
113 PRK12382 putative transporter; 99.4 1.9E-11 4.2E-16 112.8 15.9 160 26-214 227-386 (392)
114 TIGR00883 2A0106 metabolite-pr 99.4 2.6E-11 5.6E-16 110.8 16.4 156 37-210 14-184 (394)
115 COG0738 FucP Fucose permease [ 99.4 5.4E-11 1.2E-15 107.5 17.8 137 32-191 29-165 (422)
116 PRK10489 enterobactin exporter 99.4 3.1E-11 6.7E-16 112.5 17.0 159 31-215 239-397 (417)
117 PRK10406 alpha-ketoglutarate t 99.4 4.8E-11 1E-15 111.8 18.3 166 25-212 253-419 (432)
118 PRK11010 ampG muropeptide tran 99.3 5.8E-11 1.3E-15 113.2 18.5 175 12-212 9-190 (491)
119 PRK11128 putative 3-phenylprop 99.3 7.4E-11 1.6E-15 108.7 18.2 155 24-209 13-171 (382)
120 TIGR00792 gph sugar (Glycoside 99.3 3.7E-11 7.9E-16 112.3 16.0 171 25-213 9-190 (437)
121 PRK09528 lacY galactoside perm 99.3 1.5E-11 3.2E-16 114.8 13.2 155 32-212 240-398 (420)
122 TIGR01301 GPH_sucrose GPH fami 99.3 4.8E-11 1E-15 112.6 16.7 197 17-220 6-221 (477)
123 TIGR00901 2A0125 AmpG-related 99.3 3.5E-11 7.6E-16 109.5 15.1 154 35-212 7-173 (356)
124 TIGR00879 SP MFS transporter, 99.3 6.1E-11 1.3E-15 111.0 17.0 160 39-214 307-467 (481)
125 COG2814 AraJ Arabinose efflux 99.3 1.1E-10 2.3E-15 106.7 17.9 177 15-218 211-387 (394)
126 TIGR00902 2A0127 phenyl propri 99.3 1.4E-10 3.1E-15 106.9 19.2 161 18-206 7-168 (382)
127 TIGR00902 2A0127 phenyl propri 99.3 1.3E-10 2.8E-15 107.2 18.6 169 15-212 205-374 (382)
128 PTZ00207 hypothetical protein; 99.3 8.7E-11 1.9E-15 113.3 18.0 152 32-208 44-196 (591)
129 PRK11902 ampG muropeptide tran 99.3 1.2E-10 2.6E-15 108.0 17.8 165 21-211 5-176 (402)
130 PRK11010 ampG muropeptide tran 99.3 1.6E-10 3.5E-15 110.3 18.5 177 18-216 225-402 (491)
131 PF11700 ATG22: Vacuole efflux 99.3 1.4E-10 3E-15 109.8 17.8 184 13-214 279-465 (477)
132 TIGR00712 glpT glycerol-3-phos 99.3 5.9E-11 1.3E-15 111.4 14.8 178 17-215 253-431 (438)
133 COG2223 NarK Nitrate/nitrite t 99.3 9.5E-11 2.1E-15 106.4 14.6 186 14-219 217-403 (417)
134 PLN00028 nitrate transmembrane 99.3 1.6E-10 3.4E-15 109.9 16.9 172 18-215 255-431 (476)
135 PRK12307 putative sialic acid 99.3 3.8E-10 8.3E-15 105.1 18.3 144 32-200 248-391 (426)
136 PRK15402 multidrug efflux syst 99.3 9.4E-10 2E-14 102.1 20.4 165 17-203 217-381 (406)
137 TIGR02332 HpaX 4-hydroxyphenyl 99.2 2.4E-10 5.1E-15 106.6 16.0 164 16-205 243-409 (412)
138 TIGR01272 gluP glucose/galacto 99.2 3.1E-10 6.7E-15 101.9 15.8 163 15-206 140-304 (310)
139 PRK10504 putative transporter; 99.2 4.7E-10 1E-14 106.1 17.4 156 16-194 262-417 (471)
140 TIGR00792 gph sugar (Glycoside 99.2 2.2E-10 4.8E-15 107.0 14.7 161 15-195 222-383 (437)
141 KOG0252 Inorganic phosphate tr 99.2 9.7E-11 2.1E-15 107.2 11.5 142 48-208 81-237 (538)
142 PF05977 MFS_3: Transmembrane 99.2 7.8E-10 1.7E-14 105.9 17.8 180 11-215 9-188 (524)
143 TIGR00900 2A0121 H+ Antiporter 99.2 3.6E-10 7.7E-15 102.3 14.4 153 16-193 211-364 (365)
144 TIGR00894 2A0114euk Na(+)-depe 99.2 1.5E-09 3.3E-14 102.5 19.0 175 15-213 261-446 (465)
145 TIGR00881 2A0104 phosphoglycer 99.2 3E-10 6.4E-15 103.2 13.5 161 16-199 217-379 (379)
146 TIGR02718 sider_RhtX_FptX side 99.2 1.3E-09 2.8E-14 100.6 17.9 174 17-211 210-385 (390)
147 TIGR00887 2A0109 phosphate:H+ 99.2 8.1E-10 1.7E-14 105.6 16.7 165 24-211 297-483 (502)
148 PRK10091 MFS transport protein 99.2 1.4E-09 3E-14 100.3 17.7 165 18-209 202-368 (382)
149 KOG2615 Permease of the major 99.2 3.6E-10 7.7E-15 101.3 12.8 116 49-191 66-181 (451)
150 TIGR00710 efflux_Bcr_CflA drug 99.2 3E-09 6.5E-14 97.3 19.5 161 18-201 209-370 (385)
151 PRK10077 xylE D-xylose transpo 99.2 3.1E-09 6.7E-14 100.6 19.4 151 41-213 296-453 (479)
152 PRK11128 putative 3-phenylprop 99.2 2.3E-09 5E-14 98.8 18.0 166 15-209 205-371 (382)
153 TIGR00882 2A0105 oligosacchari 99.2 1.1E-09 2.5E-14 101.2 16.0 169 17-211 217-389 (396)
154 TIGR00895 2A0115 benzoate tran 99.2 8.2E-10 1.8E-14 101.1 14.5 146 17-189 252-397 (398)
155 TIGR00711 efflux_EmrB drug res 99.1 7.4E-10 1.6E-14 104.8 14.3 154 17-192 257-410 (485)
156 PRK10133 L-fucose transporter; 99.1 1.9E-09 4.1E-14 101.5 16.8 163 20-211 263-427 (438)
157 PRK14995 methyl viologen resis 99.1 1E-09 2.2E-14 104.8 15.2 152 17-191 261-412 (495)
158 COG2807 CynX Cyanate permease 99.1 2.4E-09 5.1E-14 95.7 16.1 163 28-219 25-188 (395)
159 PF05977 MFS_3: Transmembrane 99.1 4.1E-09 9E-14 100.9 18.4 171 17-213 220-390 (524)
160 PRK15034 nitrate/nitrite trans 99.1 4.7E-09 1E-13 98.7 18.1 184 16-215 253-452 (462)
161 TIGR00896 CynX cyanate transpo 99.1 2.1E-09 4.6E-14 97.8 15.3 153 15-194 197-350 (355)
162 TIGR00788 fbt folate/biopterin 99.1 2.5E-09 5.3E-14 101.5 16.2 174 13-210 23-202 (468)
163 PRK09848 glucuronide transport 99.1 1.1E-09 2.4E-14 103.1 13.3 158 15-190 228-386 (448)
164 TIGR00889 2A0110 nucleoside tr 99.1 8.1E-09 1.8E-13 96.6 18.1 163 19-208 6-171 (418)
165 PRK10213 nepI ribonucleoside t 99.1 1.4E-08 3E-13 94.1 19.4 166 17-209 218-383 (394)
166 PRK08633 2-acyl-glycerophospho 99.1 4.3E-09 9.4E-14 109.9 17.5 162 17-204 234-397 (1146)
167 KOG2533 Permease of the major 99.1 2E-09 4.4E-14 101.9 13.1 147 43-215 73-225 (495)
168 PRK10429 melibiose:sodium symp 99.1 4.4E-09 9.5E-14 99.9 15.5 161 15-191 231-392 (473)
169 KOG0253 Synaptic vesicle trans 99.0 5.7E-09 1.2E-13 93.4 13.9 176 34-237 96-273 (528)
170 COG2270 Permeases of the major 99.0 5.7E-09 1.2E-13 95.1 14.1 173 15-213 252-425 (438)
171 PRK10429 melibiose:sodium symp 99.0 7.4E-09 1.6E-13 98.3 15.7 168 23-209 14-193 (473)
172 PRK10054 putative transporter; 99.0 6.8E-09 1.5E-13 96.3 15.1 171 16-212 207-379 (395)
173 KOG2504 Monocarboxylate transp 99.0 2.6E-09 5.6E-14 101.9 12.5 174 18-218 45-222 (509)
174 TIGR00901 2A0125 AmpG-related 99.0 4.9E-09 1.1E-13 95.4 13.9 144 17-176 211-355 (356)
175 PRK09669 putative symporter Ya 99.0 6.3E-09 1.4E-13 97.9 15.0 170 23-210 17-197 (444)
176 PF13347 MFS_2: MFS/sugar tran 99.0 9E-09 2E-13 96.4 15.5 157 15-190 225-382 (428)
177 KOG2325 Predicted transporter/ 99.0 5.5E-09 1.2E-13 97.7 13.7 187 9-217 28-229 (488)
178 PRK11902 ampG muropeptide tran 99.0 2.7E-08 5.8E-13 92.4 18.4 151 36-212 230-385 (402)
179 TIGR02718 sider_RhtX_FptX side 99.0 1.9E-08 4.2E-13 92.8 17.3 174 17-212 3-179 (390)
180 PRK06814 acylglycerophosphoeth 99.0 7.1E-09 1.5E-13 108.4 16.0 181 15-204 225-409 (1140)
181 PRK11646 multidrug resistance 99.0 1.5E-08 3.3E-13 94.1 16.2 153 33-211 226-382 (400)
182 PRK11462 putative transporter; 99.0 2.4E-08 5.1E-13 94.6 17.6 170 23-210 17-197 (460)
183 TIGR00898 2A0119 cation transp 99.0 9.8E-09 2.1E-13 98.0 14.4 127 59-211 363-489 (505)
184 PF07690 MFS_1: Major Facilita 98.9 7.3E-09 1.6E-13 93.3 11.5 141 20-183 211-352 (352)
185 PRK11043 putative transporter; 98.9 1.5E-07 3.3E-12 87.1 20.2 145 26-193 214-358 (401)
186 PRK11102 bicyclomycin/multidru 98.9 1.5E-07 3.3E-12 86.1 19.5 144 21-187 200-344 (377)
187 PRK09848 glucuronide transport 98.9 6.9E-08 1.5E-12 90.9 17.6 149 23-188 16-173 (448)
188 KOG4686 Predicted sugar transp 98.9 3.6E-08 7.8E-13 85.5 13.8 154 13-194 262-416 (459)
189 PF13347 MFS_2: MFS/sugar tran 98.9 1E-08 2.2E-13 96.1 11.5 177 25-219 11-200 (428)
190 TIGR00903 2A0129 major facilit 98.9 9.1E-08 2E-12 88.0 17.4 164 15-211 192-359 (368)
191 KOG2504 Monocarboxylate transp 98.9 2.4E-08 5.2E-13 95.4 12.6 178 15-217 298-476 (509)
192 PRK09669 putative symporter Ya 98.9 4.2E-08 9.1E-13 92.3 14.2 158 17-194 231-390 (444)
193 KOG2532 Permease of the major 98.9 6.6E-08 1.4E-12 91.3 15.2 178 15-215 258-445 (466)
194 PRK11195 lysophospholipid tran 98.9 2.3E-07 4.9E-12 86.0 18.3 153 30-209 220-372 (393)
195 KOG0569 Permease of the major 98.8 3.3E-07 7.2E-12 86.3 18.2 190 12-221 266-458 (485)
196 PRK10473 multidrug efflux syst 98.8 4.3E-07 9.4E-12 83.8 18.9 69 33-102 221-289 (392)
197 PF05631 DUF791: Protein of un 98.8 6.4E-08 1.4E-12 86.9 12.6 149 44-215 62-214 (354)
198 TIGR00886 2A0108 nitrite extru 98.8 6E-08 1.3E-12 88.2 12.5 139 17-178 227-365 (366)
199 COG2807 CynX Cyanate permease 98.8 5.3E-07 1.1E-11 80.9 17.9 165 15-205 208-373 (395)
200 TIGR00885 fucP L-fucose:H+ sym 98.8 2.3E-07 5.1E-12 86.5 15.8 163 17-208 234-403 (410)
201 COG2211 MelB Na+/melibiose sym 98.8 3.9E-07 8.4E-12 85.2 16.4 157 15-189 236-393 (467)
202 PRK11462 putative transporter; 98.7 7.8E-07 1.7E-11 84.3 17.2 154 17-189 230-384 (460)
203 KOG0253 Synaptic vesicle trans 98.7 5.8E-07 1.3E-11 80.8 13.5 147 14-186 325-490 (528)
204 PRK11652 emrD multidrug resist 98.6 3E-06 6.5E-11 78.2 18.7 138 35-196 227-364 (394)
205 PF01306 LacY_symp: LacY proto 98.6 8E-07 1.7E-11 82.2 14.5 175 15-212 7-183 (412)
206 TIGR00924 yjdL_sub1_fam amino 98.6 1.2E-06 2.6E-11 83.4 14.8 182 21-218 278-469 (475)
207 PF03825 Nuc_H_symport: Nucleo 98.6 4.1E-06 8.8E-11 77.9 17.8 174 22-216 214-394 (400)
208 PRK15403 multidrug efflux syst 98.6 4.1E-06 8.8E-11 78.2 17.3 168 16-206 219-386 (413)
209 COG2211 MelB Na+/melibiose sym 98.5 6E-06 1.3E-10 77.3 16.2 170 22-209 19-199 (467)
210 PF03209 PUCC: PUCC protein; 98.5 1.1E-05 2.3E-10 73.9 17.3 168 25-214 218-395 (403)
211 PF06813 Nodulin-like: Nodulin 98.4 1.3E-05 2.8E-10 69.5 15.8 129 31-181 18-146 (250)
212 COG0738 FucP Fucose permease [ 98.4 8.6E-06 1.9E-10 74.2 14.2 155 17-200 238-392 (422)
213 PF01306 LacY_symp: LacY proto 98.4 6.3E-06 1.4E-10 76.3 13.7 172 15-212 220-395 (412)
214 PF03137 OATP: Organic Anion T 98.4 4.8E-08 1E-12 94.0 -0.5 189 24-221 12-253 (539)
215 COG0477 ProP Permeases of the 98.3 2.8E-05 6E-10 67.1 15.6 140 44-206 30-174 (338)
216 KOG2563 Permease of the major 98.3 3.6E-05 7.8E-10 71.1 15.0 107 38-157 67-173 (480)
217 PF03825 Nuc_H_symport: Nucleo 98.3 0.00013 2.8E-09 67.9 19.1 114 21-154 8-121 (400)
218 PF12832 MFS_1_like: MFS_1 lik 98.2 1.1E-05 2.5E-10 56.8 9.1 67 23-91 8-74 (77)
219 KOG2533 Permease of the major 98.2 1.2E-05 2.6E-10 76.5 11.9 163 16-202 274-441 (495)
220 KOG2816 Predicted transporter 98.2 3.9E-05 8.4E-10 72.5 15.2 174 18-222 21-204 (463)
221 PF03092 BT1: BT1 family; Int 98.2 1.7E-05 3.7E-10 74.6 12.4 155 38-212 12-170 (433)
222 PRK09584 tppB putative tripept 98.2 5.2E-05 1.1E-09 72.7 15.5 178 24-218 281-480 (500)
223 TIGR00788 fbt folate/biopterin 98.2 1.1E-05 2.3E-10 76.7 10.2 136 43-194 280-415 (468)
224 PRK10207 dipeptide/tripeptide 98.1 7.7E-05 1.7E-09 71.3 14.6 144 29-189 283-438 (489)
225 PF00083 Sugar_tr: Sugar (and 98.1 1.8E-08 4E-13 94.6 -10.2 186 15-220 252-439 (451)
226 KOG3764 Vesicular amine transp 98.1 9.4E-06 2E-10 73.8 6.6 162 28-209 283-446 (464)
227 PF03209 PUCC: PUCC protein; 98.0 0.00018 3.8E-09 66.0 14.8 140 42-194 6-153 (403)
228 KOG0254 Predicted transporter 98.0 0.00021 4.6E-09 68.6 16.1 90 11-103 290-380 (513)
229 KOG3626 Organic anion transpor 98.0 0.00012 2.6E-09 71.9 13.2 195 14-215 95-341 (735)
230 TIGR01301 GPH_sucrose GPH fami 97.9 0.00038 8.3E-09 66.1 15.2 204 11-219 254-473 (477)
231 KOG0252 Inorganic phosphate tr 97.9 6E-05 1.3E-09 69.8 9.1 178 13-212 302-493 (538)
232 PTZ00207 hypothetical protein; 97.7 0.00037 8.1E-09 67.8 12.1 176 15-219 353-554 (591)
233 PF06609 TRI12: Fungal trichot 97.7 0.00068 1.5E-08 65.8 13.2 151 13-187 308-462 (599)
234 KOG4686 Predicted sugar transp 97.7 2.2E-06 4.8E-11 74.6 -3.5 135 36-192 64-198 (459)
235 PF11700 ATG22: Vacuole efflux 97.7 0.0022 4.7E-08 61.1 15.9 136 54-208 73-238 (477)
236 PF05978 UNC-93: Ion channel r 97.6 0.0021 4.5E-08 51.7 12.2 101 56-183 42-142 (156)
237 TIGR01272 gluP glucose/galacto 97.5 0.00033 7.2E-09 62.9 7.1 81 122-208 8-104 (310)
238 PF01770 Folate_carrier: Reduc 97.5 0.0055 1.2E-07 56.8 15.1 151 35-212 23-177 (412)
239 KOG3762 Predicted transporter 97.4 0.00065 1.4E-08 64.3 8.8 155 34-215 390-545 (618)
240 TIGR00805 oat sodium-independe 97.4 0.00086 1.9E-08 66.2 9.8 82 16-98 331-415 (633)
241 KOG2563 Permease of the major 97.4 0.0035 7.6E-08 58.2 12.3 119 21-156 272-392 (480)
242 KOG0637 Sucrose transporter an 97.2 0.00038 8.2E-09 64.6 4.2 166 15-189 32-202 (498)
243 KOG0255 Synaptic vesicle trans 97.2 0.016 3.4E-07 55.8 15.5 104 63-189 362-465 (521)
244 PRK15462 dipeptide/tripeptide 97.1 0.022 4.8E-07 54.4 15.7 140 32-189 285-437 (493)
245 PF06779 DUF1228: Protein of u 97.1 0.0072 1.6E-07 43.2 9.3 65 38-103 14-78 (85)
246 PRK03612 spermidine synthase; 96.9 0.074 1.6E-06 51.3 16.8 55 23-77 22-76 (521)
247 COG2270 Permeases of the major 96.8 0.03 6.6E-07 51.8 13.1 127 34-183 34-168 (438)
248 KOG4332 Predicted sugar transp 96.7 0.0009 2E-08 58.2 1.9 93 40-153 61-154 (454)
249 TIGR00769 AAA ADP/ATP carrier 96.6 0.18 3.8E-06 48.1 17.3 163 12-190 4-189 (472)
250 KOG2816 Predicted transporter 96.5 0.023 4.9E-07 53.9 10.2 152 11-189 236-389 (463)
251 KOG2615 Permease of the major 96.4 0.032 6.9E-07 51.1 10.2 151 16-191 261-413 (451)
252 PF06963 FPN1: Ferroportin1 (F 96.3 0.17 3.6E-06 47.7 14.9 137 33-186 276-412 (432)
253 PF03137 OATP: Organic Anion T 96.0 0.0017 3.6E-08 62.8 0.0 170 17-192 307-514 (539)
254 KOG3762 Predicted transporter 95.8 0.0065 1.4E-07 57.7 2.9 64 30-95 26-89 (618)
255 KOG1330 Sugar transporter/spin 95.6 0.13 2.8E-06 48.3 10.4 132 45-196 277-417 (493)
256 PF06963 FPN1: Ferroportin1 (F 94.9 1.5 3.3E-05 41.3 15.6 76 17-93 4-79 (432)
257 KOG3626 Organic anion transpor 94.6 0.17 3.6E-06 50.4 8.4 79 17-95 394-474 (735)
258 KOG3574 Acetyl-CoA transporter 93.5 1.3 2.9E-05 40.8 11.4 158 10-185 26-188 (510)
259 COG3104 PTR2 Dipeptide/tripept 93.4 1.8 3.9E-05 41.1 12.5 146 54-215 327-485 (498)
260 KOG3098 Uncharacterized conser 92.9 2.5 5.5E-05 40.1 12.9 79 57-156 56-134 (461)
261 TIGR00926 2A1704 Peptide:H+ sy 91.5 4.3 9.3E-05 40.5 13.2 166 47-227 16-189 (654)
262 KOG4332 Predicted sugar transp 91.0 1.9 4E-05 38.1 8.8 138 54-212 285-426 (454)
263 PF02487 CLN3: CLN3 protein; 90.7 1.5 3.3E-05 40.7 8.6 74 60-154 68-141 (402)
264 KOG3098 Uncharacterized conser 90.3 12 0.00026 35.6 14.3 91 62-156 290-385 (461)
265 KOG2325 Predicted transporter/ 89.7 0.79 1.7E-05 43.6 6.0 190 13-209 260-467 (488)
266 KOG3097 Predicted membrane pro 89.5 5.8 0.00013 36.0 10.8 115 12-154 26-140 (390)
267 KOG1479 Nucleoside transporter 87.4 25 0.00054 32.8 15.5 31 124-155 117-147 (406)
268 PF02487 CLN3: CLN3 protein; 85.9 11 0.00024 35.1 11.0 61 123-189 334-394 (402)
269 PF03092 BT1: BT1 family; Int 84.3 1.7 3.8E-05 40.9 5.1 131 44-191 245-379 (433)
270 TIGR00880 2_A_01_02 Multidrug 83.2 16 0.00035 26.9 10.5 41 54-95 90-130 (141)
271 TIGR00806 rfc RFC reduced fola 79.4 47 0.001 32.0 12.5 109 27-153 274-382 (511)
272 KOG0637 Sucrose transporter an 77.3 8.6 0.00019 36.4 6.8 79 11-90 275-370 (498)
273 KOG4112 Signal peptidase subun 76.6 12 0.00025 27.0 5.8 51 169-222 26-76 (101)
274 TIGR00769 AAA ADP/ATP carrier 75.5 78 0.0017 30.3 17.1 67 137-208 279-345 (472)
275 COG5336 Uncharacterized protei 68.7 25 0.00053 26.2 6.1 30 59-88 50-79 (116)
276 PF03219 TLC: TLC ATP/ADP tran 67.4 1.2E+02 0.0026 29.2 13.1 40 146-191 166-205 (491)
277 TIGR00939 2a57 Equilibrative N 65.4 50 0.0011 31.2 9.3 53 125-183 373-425 (437)
278 PF06645 SPC12: Microsomal sig 64.3 17 0.00037 25.3 4.5 48 171-221 13-60 (76)
279 KOG1479 Nucleoside transporter 62.0 50 0.0011 30.9 8.3 108 37-157 265-376 (406)
280 PF01770 Folate_carrier: Reduc 54.0 1.9E+02 0.0042 27.1 10.9 40 53-93 287-326 (412)
281 PF09527 ATPase_gene1: Putativ 53.3 57 0.0012 20.8 6.5 28 60-87 9-36 (55)
282 PF00854 PTR2: POT family; In 52.7 88 0.0019 28.4 8.5 76 25-101 41-121 (372)
283 KOG4830 Predicted sugar transp 50.1 29 0.00062 30.7 4.4 72 12-86 15-95 (412)
284 PF13000 Acatn: Acetyl-coenzym 48.6 1.4E+02 0.0029 29.1 8.9 249 16-296 1-286 (544)
285 COG2233 UraA Xanthine/uracil p 45.8 1.7E+02 0.0036 27.9 9.0 78 20-98 18-95 (451)
286 KOG1237 H+/oligopeptide sympor 44.6 47 0.001 32.6 5.5 96 122-223 456-566 (571)
287 COG3619 Predicted membrane pro 44.4 2E+02 0.0044 24.6 16.2 32 13-44 10-41 (226)
288 TIGR00939 2a57 Equilibrative N 43.4 2.9E+02 0.0063 26.1 12.6 32 123-155 105-136 (437)
289 PF03219 TLC: TLC ATP/ADP tran 40.6 3.4E+02 0.0075 26.1 18.6 70 135-209 293-362 (491)
290 PF05631 DUF791: Protein of un 39.2 3.1E+02 0.0067 25.2 16.9 51 133-183 248-299 (354)
291 TIGR02230 ATPase_gene1 F0F1-AT 38.1 1.6E+02 0.0034 21.7 6.1 26 60-85 51-76 (100)
292 PRK10263 DNA translocase FtsK; 36.8 3.2E+02 0.0069 29.9 10.2 12 66-77 63-74 (1355)
293 TIGR01666 YCCS hypothetical me 36.5 2.4E+02 0.0052 28.6 9.1 52 72-141 44-98 (704)
294 TIGR01667 YCCS_YHJK integral m 36.3 2.3E+02 0.0049 28.8 8.9 47 76-140 51-97 (701)
295 COG3202 ATP/ADP translocase [E 34.9 4.3E+02 0.0093 25.6 14.2 167 10-191 22-209 (509)
296 PRK02237 hypothetical protein; 33.8 1.3E+02 0.0029 22.4 5.1 48 51-99 56-103 (109)
297 PF00558 Vpu: Vpu protein; In 31.5 80 0.0017 22.3 3.5 18 206-223 16-33 (81)
298 COG1230 CzcD Co/Zn/Cd efflux s 29.2 4.2E+02 0.0091 23.7 10.0 27 32-58 41-67 (296)
299 PF10777 YlaC: Inner membrane 28.8 2E+02 0.0044 22.8 5.7 37 187-223 53-89 (155)
300 KOG3827 Inward rectifier K+ ch 28.5 96 0.0021 28.6 4.4 39 12-50 60-98 (400)
301 COG3086 RseC Positive regulato 26.5 3.3E+02 0.0071 21.6 6.6 42 46-88 67-108 (150)
302 PF11947 DUF3464: Protein of u 21.9 2.9E+02 0.0062 22.1 5.5 19 164-182 128-146 (153)
303 COG1268 BioY Uncharacterized c 21.9 1.9E+02 0.0041 23.9 4.6 19 60-78 91-109 (184)
304 PLN00411 nodulin MtN21 family 21.8 6.2E+02 0.013 23.1 10.0 51 47-100 101-155 (358)
305 PRK11469 hypothetical protein; 20.9 4.8E+02 0.01 21.5 10.0 77 14-99 105-182 (188)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=99.97 E-value=4.2e-29 Score=238.57 Aligned_cols=283 Identities=33% Similarity=0.534 Sum_probs=237.9
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513 10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG 89 (296)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~ 89 (296)
+++.|+++.++++.+.+|+.++||+..++..|++.++|.+...+...++.+.+.....++++++++|.|+||++++.+++
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCC----CCCCcCCc--chHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhh
Q 022513 90 TLEVLSLVMLTIQAYSKSLHPPDC----GKSSCLKG--AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA 163 (296)
Q Consensus 90 ~~~~ig~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~ 163 (296)
+++.+|..++..+...+.+.++.| ..+.|+.. .+...++.++.++++|.|+.+++..++.+|||++..+.++..
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 999999999998887888877765 23456653 356789999999999999999999999999999877777777
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhhh------
Q 022513 164 LASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVP------ 237 (296)
Q Consensus 164 r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vl------ 237 (296)
+.++|+|+|+..++|.+++-.+..|++++.+|.++|.++.+++++++++|+.+.+.|+.++|.++|...+.+++
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k 271 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK 271 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC-----CCCCCC-----Ccccccccc----------cccCCcccc-ceeeecceeeeeccchhhhhhhhc
Q 022513 238 HSLPIPFLF-----GPKSLK-----PLEMILKYT----------RHKINIYKL-KKTQSEEDYIFFSLEWSPILKSYI 294 (296)
Q Consensus 238 ~~~~~~~~~-----~~~~~~-----~~~~~l~~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 294 (296)
|+.+.+.+. +..+.. +.-+.+|.+ ....++|+. ..+++||+|..+++ .|+...++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~--~Pi~~~~i 347 (571)
T KOG1237|consen 272 RKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRL--LPIWLTTI 347 (571)
T ss_pred HhccCCCcchhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhh--hHHHHHHH
Confidence 343332221 000000 011111111 112345777 57899999999887 46665554
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.94 E-value=1.6e-26 Score=212.07 Aligned_cols=192 Identities=20% Similarity=0.385 Sum_probs=176.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcC----CChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHH
Q 022513 11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMH----FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL 86 (296)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~----~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~ 86 (296)
-+|||.++.++.++++||++|||++..+..|++.+++ +|.+++..+.+.+....++.+++|||+|||++|+|+++.
T Consensus 17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~ 96 (498)
T COG3104 17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV 96 (498)
T ss_pred CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 3699999999999999999999999999999999888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhh
Q 022513 87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS 166 (296)
Q Consensus 87 ~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~ 166 (296)
.+.+++++|.+++..+.. .....+++++.++++|.|.+++++.++++|++|+++++ |..
T Consensus 97 lGail~~iGh~~L~~~~~-----------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~ 155 (498)
T COG3104 97 LGAILMAIGHLVLAISSV-----------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDG 155 (498)
T ss_pred HHHHHHHHHHHHHhcccc-----------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCC
Confidence 999999999998876520 12357999999999999999999999999999988854 788
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceeec
Q 022513 167 YFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQ 223 (296)
Q Consensus 167 ~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~ 223 (296)
.|+.+|.+.|+|++++|++.+++.+++||+.+|.++++.+.++++.++.+++++...
T Consensus 156 gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 156 GFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred CccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence 999999999999999999999999999999999999999999999988888766544
No 3
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.93 E-value=1.4e-24 Score=206.23 Aligned_cols=190 Identities=15% Similarity=0.253 Sum_probs=165.1
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHH
Q 022513 9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF 88 (296)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~ 88 (296)
..++|||.++.++..+++|++++|++..+++.|+++++|++.++++++.+.+....++.++++|+++||++||||++.++
T Consensus 8 ~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g 87 (489)
T PRK10207 8 GLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG 87 (489)
T ss_pred chhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999967999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhH
Q 022513 89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF 168 (296)
Q Consensus 89 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~ 168 (296)
.+++.+|.+++.++.. ....++++|.++++|.|...++..++++|+||++++ +|++.+
T Consensus 88 ~~~~~~g~~~~~~~~~------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~ 145 (489)
T PRK10207 88 AIVLAIGYFMTGMSLL------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAF 145 (489)
T ss_pred HHHHHHHHHHHHHhcc------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcch
Confidence 9999999988876531 123466889999999999999999999999987652 257789
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCce
Q 022513 169 NFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFY 220 (296)
Q Consensus 169 ~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~ 220 (296)
+++|++.|+|..++|.+++++.++.||++.|+++++.+.++++.+...++.+
T Consensus 146 ~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~ 197 (489)
T PRK10207 146 TLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMV 197 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 9999999999999999999999999999999998776666665555554443
No 4
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.91 E-value=5.1e-23 Score=195.05 Aligned_cols=191 Identities=16% Similarity=0.272 Sum_probs=165.6
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhh--cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHH
Q 022513 9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNE--MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL 86 (296)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~ 86 (296)
...+++|.++.+.+.+++|++++|++.++++.|++++ +|++..+++.+.+.+.++..++++++|+++||++|||+++.
T Consensus 4 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~ 83 (475)
T TIGR00924 4 TFFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV 83 (475)
T ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence 3456899999999999999999999999999999987 99999999999999999999999999999999569999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhh
Q 022513 87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS 166 (296)
Q Consensus 87 ~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~ 166 (296)
++.+++.++.+++..+. +...+++++++.|+|.|...++..++++|++|+++++ +|++
T Consensus 84 ~~~~~~~~g~~~~~~~~-------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~ 141 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSI-------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDG 141 (475)
T ss_pred HHHHHHHHHHHHHHhcc-------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccc
Confidence 99999999987766542 2346778899999999999999999999999865422 2678
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCcee
Q 022513 167 YFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYR 221 (296)
Q Consensus 167 ~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~ 221 (296)
.++++|.+.|+|..+||.+++++.++.||++.|.++++.++++.+.++..++.+.
T Consensus 142 ~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~ 196 (475)
T TIGR00924 142 GFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLR 196 (475)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 8999999999999999999999999899999999988777666666655555443
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.90 E-value=4.3e-22 Score=187.80 Aligned_cols=189 Identities=21% Similarity=0.376 Sum_probs=161.1
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513 10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG 89 (296)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~ 89 (296)
+.+|||.++.++..++++++++|++..+++.|+++++|++..+++.+.+.+.+...++++++|+++||++||||++.++.
T Consensus 4 ~~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~ 83 (493)
T PRK15462 4 HASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGA 83 (493)
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999449999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513 90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN 169 (296)
Q Consensus 90 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~ 169 (296)
++..+|.+++..... ....++++..+.++|.|...++.+++++|+||++++ +|.+.++
T Consensus 84 il~~lg~lll~~~~~------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~ 141 (493)
T PRK15462 84 LLMAIGHVVLGASEI------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFS 141 (493)
T ss_pred HHHHHHHHHHHHhhc------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceeh
Confidence 999998766543210 112355566677788888889999999999997642 2788999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCce
Q 022513 170 FYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFY 220 (296)
Q Consensus 170 ~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~ 220 (296)
++|...|+|+.++|.+.+++.++.||+++|.++++.++++++.++..++++
T Consensus 142 i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l 192 (493)
T PRK15462 142 LMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHF 192 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999998887777777776655544
No 6
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.89 E-value=2.3e-22 Score=195.57 Aligned_cols=195 Identities=24% Similarity=0.390 Sum_probs=167.9
Q ss_pred HHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 022513 29 MGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSL 108 (296)
Q Consensus 29 ~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~ 108 (296)
++|||+...+..|+++.+|++.+.+..+.+.+...+.+.++++|+++|+++||++++.++.+++.+|.++++++...+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999888765321111
Q ss_pred CCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Q 022513 109 HPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY 188 (296)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~ 188 (296)
+ ..+....++++.++++|.|+.++++.++++||+++++ ++++.++|+++|+++|+|+++++.+.++
T Consensus 81 ~-----------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i~~~ 146 (654)
T TIGR00926 81 H-----------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTIITPI 146 (654)
T ss_pred c-----------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233457788999999999999999999999998643 3347899999999999999999999999
Q ss_pred hccc-------cchhHHHHHHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhhh
Q 022513 189 VFID-------QGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVP 237 (296)
Q Consensus 189 l~~~-------~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vl 237 (296)
+++. .+|..+|.+++++++++++++...++++...+|+++++.+..+++
T Consensus 147 l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi 202 (654)
T TIGR00926 147 LRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCI 202 (654)
T ss_pred HHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHH
Confidence 8744 369999999999999999999999998888888888877777777
No 7
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.88 E-value=4.5e-21 Score=182.88 Aligned_cols=185 Identities=17% Similarity=0.333 Sum_probs=156.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHH
Q 022513 11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT 90 (296)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~ 90 (296)
.+++|.++.++..++++++++|++..+++.|+++++|++.++++.+.+.+.......++++|+++||++|||+++.++.+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 36788899999999999999999999999999999999999988888887777777778999999994499999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513 91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF 170 (296)
Q Consensus 91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~ 170 (296)
+..++..++..+. .....+++++++.|+|.|...++..++++|++|++++ ++.+.+++
T Consensus 97 ~~~ig~~l~~~~~------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~ 154 (500)
T PRK09584 97 VLAIGYALVAWSG------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTM 154 (500)
T ss_pred HHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchH
Confidence 9998887766542 1234567889999999999999999999999986542 24567788
Q ss_pred HHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcC
Q 022513 171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGK 217 (296)
Q Consensus 171 ~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~ 217 (296)
+|.+.++|+.++|.+++++.++.||++.|.+.++.++++++.++...
T Consensus 155 ~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~ 201 (500)
T PRK09584 155 YYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQ 201 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 89999999999999999999999999999998876666665554443
No 8
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.76 E-value=3.8e-17 Score=155.55 Aligned_cols=222 Identities=11% Similarity=0.070 Sum_probs=147.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
+++.........++....+|++..++|.|+++.+|++..++........++..++.+++|+++|| +|||+++..+.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence 44544444444556677889999999999999999998887777777788888999999999999 79999988877654
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.++.+....... ..+...+++++++.+++.+...+....+..|.+|++. |++..++.+
T Consensus 327 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~ 384 (490)
T PRK10642 327 FVLAIPAFILIN----------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAAF 384 (490)
T ss_pred HHHHHHHHHHHh----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHHH
Confidence 443333222110 1124556777888877766666677788889999776 788888755
Q ss_pred HHHHHHHHHHHhhhhhhcccc-chhHHHHHHHHHHHHH--HHHHHhcCCceeecC--CCCChhhhhhhhhccCCCCCCCC
Q 022513 173 FATTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVATLIG--LIALAIGKPFYRIQQ--PGESPLVRVAQVPHSLPIPFLFG 247 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~-gw~~~f~i~~~~~~~~--~i~~~~~~~~~~~~~--~~~~~~~~~~~vl~~~~~~~~~~ 247 (296)
....+++.++|.+.+++.+.. +|+.++++..+..++. ...+.+++|++..++ ++++..+++.++++|+.. ++
T Consensus 385 ~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~---~~ 461 (490)
T PRK10642 385 NISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYD---NI 461 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhcccc---cc
Confidence 445666778888888887654 4665554433332222 333456777775543 122335667777766542 24
Q ss_pred CCCCCCccccccc
Q 022513 248 PKSLKPLEMILKY 260 (296)
Q Consensus 248 ~~~~~~~~~~l~~ 260 (296)
+.|.+|+++.++.
T Consensus 462 ~~~~~~i~~~~~~ 474 (490)
T PRK10642 462 EQKIDDIDQEIAE 474 (490)
T ss_pred cchhhhccccchh
Confidence 4566666665553
No 9
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1e-16 Score=145.86 Aligned_cols=204 Identities=17% Similarity=0.090 Sum_probs=171.0
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHH
Q 022513 9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF 88 (296)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~ 88 (296)
.++..|..++.+.+..|.....-+.....++. +.+++|.|..++++.++.|..+..++.|+...+.|| +.||++++..
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~ 84 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGL 84 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHH
Confidence 34557777777777888877777766666665 788999999999999999999999999999999999 7999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhH
Q 022513 89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF 168 (296)
Q Consensus 89 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~ 168 (296)
..+++++.++.+++. ++..+.++|++.|+..|.+++...+..+|..|+++ |++..
T Consensus 85 l~lFi~~n~l~alAp-------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Ai 139 (394)
T COG2814 85 LALFIVSNLLSALAP-------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRAL 139 (394)
T ss_pred HHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHH
Confidence 999999999988874 46789999999999999999999999999999876 78899
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhhhcc
Q 022513 169 NFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVPHS 239 (296)
Q Consensus 169 ~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~ 239 (296)
+..+.+.+++..+|..++.++.+.+|||..|+..+.+.++.++..+...|+-...+++++++.+..+.+|+
T Consensus 140 aiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~ 210 (394)
T COG2814 140 ALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRR 210 (394)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcC
Confidence 99899999999999999999999999999999988888877777777777111122233455666666644
No 10
>PRK10054 putative transporter; Provisional
Probab=99.74 E-value=1e-16 Score=148.63 Aligned_cols=172 Identities=13% Similarity=0.102 Sum_probs=142.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
.+|..+.++...++...+.+.+.++++.|+++++|++..+.++..+.+.++..++.++.|+++|| +|||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHH
Confidence 45667777888888899988889999999999999999999999999999999999999999999 79999999988888
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.++.+++.+.. +...+++.+.+.+.+.+...+...++.+|.+|+++ |++.+++.+
T Consensus 84 ~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~ 138 (395)
T PRK10054 84 ASGFIAIPLVN-------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNY 138 (395)
T ss_pred HHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHH
Confidence 77776665543 24456667777777777777888888899887543 788889999
Q ss_pred HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i 211 (296)
...++|..++|.+++++.+ .+|+..|.+.+++.++..+
T Consensus 139 ~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i 176 (395)
T PRK10054 139 TMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLV 176 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHH
Confidence 9999999999999998864 6899999987776665543
No 11
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.74 E-value=1.2e-16 Score=148.02 Aligned_cols=176 Identities=13% Similarity=0.052 Sum_probs=143.1
Q ss_pred CcccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH
Q 022513 8 IKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV 87 (296)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~ 87 (296)
+..|..|+....+....++.....|.....++. +.+++|+++++.++.++.+..+..++.++.|+++|| +|||+++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~ 90 (394)
T PRK10213 13 AITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVIL 90 (394)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHH
Confidence 344557776665555555555555555556655 567899999999999999999999999999999999 799999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513 88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY 167 (296)
Q Consensus 88 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~ 167 (296)
+.++..++.++...+. +.+.+++.|++.|++.|...+...+++.|.+|+++ |+..
T Consensus 91 ~~~~~~~~~~~~~~~~-------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a 145 (394)
T PRK10213 91 FAVLLTLSCLLVSFAN-------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKA 145 (394)
T ss_pred HHHHHHHHHHHHHHHC-------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHH
Confidence 9999988877765542 45789999999999999999999999999998654 7788
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHH
Q 022513 168 FNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL 210 (296)
Q Consensus 168 ~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~ 210 (296)
.+....+.++|..++|.+++++.+..||++.|++.+++.++..
T Consensus 146 ~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 146 LSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999988999999988776554443
No 12
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.74 E-value=7.8e-17 Score=150.19 Aligned_cols=173 Identities=13% Similarity=0.074 Sum_probs=139.3
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513 10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG 89 (296)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~ 89 (296)
||.+|+..+.+.+..+++......+ .+....+++++|++..+.+++.+++.++..++.++.|+++|| +|||+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~ 80 (412)
T TIGR02332 3 KKLFRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIM 80 (412)
T ss_pred eeehhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHH
Confidence 4446666665555555555544433 344457899999999999999999999999999999999999 79999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513 90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN 169 (296)
Q Consensus 90 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~ 169 (296)
++..++.+++..+. +...+++.|++.|++.|...+....+++|.+|+++ |++..+
T Consensus 81 ~~~~~~~~~~~~~~-------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~ 135 (412)
T TIGR02332 81 VLWGIASTATMFAT-------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANA 135 (412)
T ss_pred HHHHHHHHHHHHhc-------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHH
Confidence 99988888776643 35678899999999999988888889999998543 788888
Q ss_pred HHHHHHHHHHHHHHhhhhhhcc------ccchhHHHHHHHHHHHHH
Q 022513 170 FYLFATTLAAMIGVTAIVYVFI------DQGWWLGFLISSVATLIG 209 (296)
Q Consensus 170 ~~~~~~~~G~~i~~~~~~~l~~------~~gw~~~f~i~~~~~~~~ 209 (296)
.++.+..+|..+++.+++++.+ ..|||+.|.+.++..++.
T Consensus 136 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~ 181 (412)
T TIGR02332 136 LFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVIL 181 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHH
Confidence 8888999999999999888753 369999999876665443
No 13
>PRK03545 putative arabinose transporter; Provisional
Probab=99.74 E-value=1.2e-16 Score=147.57 Aligned_cols=174 Identities=14% Similarity=0.039 Sum_probs=139.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513 12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL 91 (296)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~ 91 (296)
++|...+.+....+......+.....+ +.+.+++|.++.+.++..+.+.++..++.++.|+++|| +|||+++..+.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 83 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVL 83 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHH
Confidence 345555555555555444444333334 45778999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
..++.+....+. +...++++|++.|++.+...+...+++.|.+|+++ |++.++++
T Consensus 84 ~~~~~~~~~~~~-------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~ 138 (390)
T PRK03545 84 FIASHVLSALAW-------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLL 138 (390)
T ss_pred HHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHH
Confidence 888887766543 45778899999999998888888899999998654 78888888
Q ss_pred HHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 172 ~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
..+.++|..++|.+++.+.+..|||+.|++.+++.++..+.
T Consensus 139 ~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~ 179 (390)
T PRK03545 139 ATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLL 179 (390)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998888889999999887766554443
No 14
>PRK12382 putative transporter; Provisional
Probab=99.73 E-value=2.8e-16 Score=145.05 Aligned_cols=175 Identities=13% Similarity=-0.035 Sum_probs=136.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
..+.++.+....++...+.....+.++.|+.+++|.|..+.+++.+.+.++..++.++.|+++|| +||||++..+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~ 91 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLAC 91 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHH
Confidence 34455555556666666666667788889999999999999999999999999999999999999 79999999988877
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.++.+........+.. ...+...++++|++.|++.+...+...+++.|.+|+++ |++..+++.
T Consensus 92 ~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~ 154 (392)
T PRK12382 92 GLAGLAYLLAAILPVS-----------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNG 154 (392)
T ss_pred HHHHHHHHhhhccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHH
Confidence 6665433322111100 01246778999999999999888888888899988654 788888888
Q ss_pred HHHHHHHHHHHhhhhhhccccchhHHHHHHHHH
Q 022513 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVA 205 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~ 205 (296)
.+.++|..++|.+++++.+..||+..+.+..+.
T Consensus 155 ~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 155 MAMYGALAAGAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 888999999999999988888999876655443
No 15
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.73 E-value=4.7e-18 Score=154.79 Aligned_cols=176 Identities=12% Similarity=0.050 Sum_probs=149.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
.++.+..+.++..+++..-|.+...+ .-.++.+|++++..+++..++.+...+..|+.|+++|| +.||+++.+|..++
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIW 108 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHH
Confidence 34556666677778887777665433 34677899999999999999999999999999999999 59999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.+..+...++. +.+++.+.|.+.|+|.+.+.+..+++++|.||+.+ |++.++++|
T Consensus 109 ~~Av~~~~fs~-------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify 163 (493)
T KOG1330|consen 109 TLAVFASGFSN-------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFY 163 (493)
T ss_pred HHHHHHHHHHH-------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhh
Confidence 99888877653 46889999999999999999999999999999776 899999999
Q ss_pred HHHHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHh
Q 022513 173 FATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~ 215 (296)
+++++|.++|.++++++.+..+ ||++|+..+++.++..++.+.
T Consensus 164 ~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~ 207 (493)
T KOG1330|consen 164 FAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFL 207 (493)
T ss_pred hhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHh
Confidence 9999999999999988887765 999999988877665554433
No 16
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.73 E-value=2.1e-16 Score=142.55 Aligned_cols=165 Identities=21% Similarity=0.287 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 022513 22 VLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTI 101 (296)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~ 101 (296)
...++..++.......++.++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.++..+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhh
Confidence 34555566655555666658889999999999999999999999999999999999 79999999999999888555443
Q ss_pred HhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 022513 102 QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI 181 (296)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 181 (296)
+. +...++++|++.|++.+...+...+++.|.+|+++ |++.++..+...++|..+
T Consensus 82 ~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~ 136 (352)
T PF07690_consen 82 AS-------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSIL 136 (352)
T ss_dssp HC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHH
T ss_pred hh-------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhc
Confidence 31 23478999999999999999999999999999765 788889999999999999
Q ss_pred HHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 182 GVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 182 ~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
+|.+++++.+..+|++.|++.+++.++..++
T Consensus 137 g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 137 GPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhccccccccccccchhhhhhhh
Confidence 9999999998889999999988877766553
No 17
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.72 E-value=2.7e-16 Score=146.02 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHH
Q 022513 18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV 97 (296)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~ 97 (296)
+.++...++...+.+.+.+.++.|+++++|+|..+.+.+.+...+...+..+++|+++|| +|||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 456678888899999999999999999999999999999999999999999999999999 7999999999999988877
Q ss_pred HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHH
Q 022513 98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL 177 (296)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (296)
.+.... +.+.+++.|++.|++.+...+...+++.|.+|+++ |++..++++...++
T Consensus 92 ~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~ 146 (400)
T PRK11646 92 TMAIAH-------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSA 146 (400)
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence 765432 35678889999999988888888899999988543 78888999999999
Q ss_pred HHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513 178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 178 G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i 211 (296)
|..+||.+++++. ..+|++.|++.++..++..+
T Consensus 147 g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i 179 (400)
T PRK11646 147 GAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAA 179 (400)
T ss_pred HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence 9999999999988 67999999887766554433
No 18
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.72 E-value=4.8e-16 Score=143.77 Aligned_cols=177 Identities=14% Similarity=0.004 Sum_probs=142.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513 14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ 93 (296)
+|.+..+....+....+.......++.|+++++|.|..+.+++.+++.++..++.++.|+++|| +||||++..+.+++.
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHH
Confidence 4556666777777788877777888999999999999999999999999999999999999999 799999999998887
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
++.+.+..+...... ...+...+++.|++.|++.+...+...+++.|.+|+++ |++..+++..
T Consensus 93 ~~~~~~~~~~~~~~~-----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~ 155 (399)
T PRK05122 93 LSGLLYLLAGLLAAW-----------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGI 155 (399)
T ss_pred HHHHHHHHhhhhhcc-----------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhh
Confidence 776655543211100 01235578899999999999999998899999988654 6778888778
Q ss_pred HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHH
Q 022513 174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLI 208 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~ 208 (296)
+.++|..+++.+++++.+..||+..+.+..++.++
T Consensus 156 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~ 190 (399)
T PRK05122 156 ATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALL 190 (399)
T ss_pred hhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 88889999999999988888999888776554433
No 19
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.72 E-value=4e-16 Score=143.57 Aligned_cols=175 Identities=13% Similarity=0.150 Sum_probs=142.5
Q ss_pred CcccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH
Q 022513 8 IKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV 87 (296)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~ 87 (296)
..++.+|+.........+.+.+..+...... ..+++++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~ 82 (405)
T TIGR00891 5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVT 82 (405)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHH
Confidence 3455678877777777777777766554444 45778999999999999999999999999999999999 799999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513 88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY 167 (296)
Q Consensus 88 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~ 167 (296)
+.++..++.+++..+. +...+++.|++.|++.+...+...+++.|.+|+++ |+..
T Consensus 83 ~~~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~ 137 (405)
T TIGR00891 83 SIVLFSAGTLACGFAP-------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKA 137 (405)
T ss_pred HHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHH
Confidence 9888888877665542 35678889999999999999999999999998654 7788
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccc--hhHHHHHHHHHHHHH
Q 022513 168 FNFYLFATTLAAMIGVTAIVYVFIDQG--WWLGFLISSVATLIG 209 (296)
Q Consensus 168 ~~~~~~~~~~G~~i~~~~~~~l~~~~g--w~~~f~i~~~~~~~~ 209 (296)
.++++...++|..+++.+.+.+.+..+ |++.|.+.++..++.
T Consensus 138 ~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 138 SGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 888888899999999988888776555 999998765544443
No 20
>PRK10504 putative transporter; Provisional
Probab=99.71 E-value=3.6e-16 Score=147.83 Aligned_cols=180 Identities=10% Similarity=0.030 Sum_probs=144.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
+++..+.+....++.....+.+...++.+.+ ++|.+..+.+++.+.+.++..++.+++|+++|| +|||+++..+.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~ 85 (471)
T PRK10504 8 VRWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLF 85 (471)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHH
Confidence 3455677777777878777777777777664 699999999999999999999999999999999 79999999988888
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.++.++...+. +...++++|++.|++.|...+...+++.|.+|+++ |++.+++++
T Consensus 86 ~~~~~~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 140 (471)
T PRK10504 86 TLGSLFCALSG-------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVT 140 (471)
T ss_pred HHHHHHHHHhC-------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence 87776654432 34678889999999999998989999999987433 678888888
Q ss_pred HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPF 219 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~ 219 (296)
...++|..++|.+++++.++.+|++.|.+......+..+......|+
T Consensus 141 ~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 141 LPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88999999999999999988999999998766555554444433343
No 21
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.71 E-value=1.9e-16 Score=156.10 Aligned_cols=175 Identities=8% Similarity=0.064 Sum_probs=136.2
Q ss_pred hHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 022513 34 NGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC 113 (296)
Q Consensus 34 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~ 113 (296)
+...+.+++.+++|++..+.+++.+++.++..++.+++|+++|| +|||+++++++++..++.+++.++.
T Consensus 185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~---------- 253 (742)
T TIGR01299 185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ---------- 253 (742)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 34455567778899999999999999999999999999999999 7999999999988888877766543
Q ss_pred CCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc--
Q 022513 114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI-- 191 (296)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~-- 191 (296)
+...++++|++.|+|.|+..+..+++++|.+|.+. |+..++++.....+|.++++.++.++..
T Consensus 254 ---------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~ 318 (742)
T TIGR01299 254 ---------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHY 318 (742)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678899999999999999999999999998543 7788888888888888888766544332
Q ss_pred -----------ccchhHHHHHHHHHHHHHH--HHHHhcCCceeecCCCCChhhhhhhhh
Q 022513 192 -----------DQGWWLGFLISSVATLIGL--IALAIGKPFYRIQQPGESPLVRVAQVP 237 (296)
Q Consensus 192 -----------~~gw~~~f~i~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~vl 237 (296)
..+||+.+++.++..++.+ ..+++++|+|...+.+. +++.+++
T Consensus 319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~---~eA~~iL 374 (742)
T TIGR01299 319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKH---DEAWMIL 374 (742)
T ss_pred cchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCH---HHHHHHH
Confidence 2368888877665544433 33467889988766553 4444444
No 22
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.70 E-value=4.8e-16 Score=148.25 Aligned_cols=177 Identities=12% Similarity=0.013 Sum_probs=141.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
.|..+..+.+..++..+....+...+|. +.+++|.+..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence 3455555566666666665555555555 567899999999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.++.+++..+. +...++++|++.|+|.++..+.....+.+.+++++ +|++.++++.
T Consensus 82 ~~~~~~~~~a~-------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~ 137 (495)
T PRK14995 82 GLASLAAAFSP-------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWA 137 (495)
T ss_pred HHHHHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHH
Confidence 99988877543 45788999999999999887777777777764321 2788889999
Q ss_pred HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
...++|..+||.+++++.++.+||+.|++...+.++..++...
T Consensus 138 ~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~ 180 (495)
T PRK14995 138 AVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTAR 180 (495)
T ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876655544443333
No 23
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.69 E-value=9.1e-16 Score=146.54 Aligned_cols=193 Identities=13% Similarity=0.079 Sum_probs=136.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhh-----cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNE-----MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV 87 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~ 87 (296)
+++.+..+....+.+.+....+....+. +..+ .+.+..+.+++.+.+.++..++.+++|+++|| +|||+++.+
T Consensus 14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~ 91 (502)
T TIGR00887 14 HFRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHH
Confidence 3444444444445555443333222332 3322 34556677888999999999999999999999 799999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513 88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY 167 (296)
Q Consensus 88 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~ 167 (296)
+.++..++.++...+.... ...+...++++|++.|++.|+..+..+.+++|.+|++. |++.
T Consensus 92 ~~~~~~v~~~~~~~~~~~~-------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~ 152 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGSS-------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAM 152 (502)
T ss_pred HHHHHHHHHHHHHHccCcc-------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHH
Confidence 9999998887766542100 01125679999999999999999999999999999765 7888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcc-----------------------ccchhHHHHHHHHHHHHHH--HHHHhcCCceee
Q 022513 168 FNFYLFATTLAAMIGVTAIVYVFI-----------------------DQGWWLGFLISSVATLIGL--IALAIGKPFYRI 222 (296)
Q Consensus 168 ~~~~~~~~~~G~~i~~~~~~~l~~-----------------------~~gw~~~f~i~~~~~~~~~--i~~~~~~~~~~~ 222 (296)
.++.+....+|..+++.+..++.. ..+||+.|.+.++..++.. ..+++++|+|..
T Consensus 153 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~ 232 (502)
T TIGR00887 153 MAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTA 232 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 888888888888888776544321 2479999987665544332 345689999876
Q ss_pred cCCC
Q 022513 223 QQPG 226 (296)
Q Consensus 223 ~~~~ 226 (296)
.+.+
T Consensus 233 ~~~~ 236 (502)
T TIGR00887 233 DVAK 236 (502)
T ss_pred HhCc
Confidence 5554
No 24
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.69 E-value=1.6e-15 Score=140.15 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=134.6
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513 10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG 89 (296)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~ 89 (296)
|++.+|..+.+....++.........+.++ ++.+++|.|+.+.+++.+.+.++..++.++.|+++|| +|||+++.++.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~ 80 (394)
T PRK11652 3 RQRNVNLLFMLVLLVAVGQMAQTIYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGM 80 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHH
Confidence 344667676666666666655444444444 4568899999999999999999999999999999999 79999999998
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513 90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN 169 (296)
Q Consensus 90 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~ 169 (296)
++..++.++...+. +...+++.|++.|++.+...+....+..|.++.++ ++...+
T Consensus 81 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 135 (394)
T PRK11652 81 SIFILGTLVALFAH-------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANS 135 (394)
T ss_pred HHHHHHHHHHHHHc-------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHH
Confidence 88888877665432 35678889999999988777777777788776432 566777
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513 170 FYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 170 ~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~ 209 (296)
.+..+..+|..++|.+++++.+..+|++.|++.++..++.
T Consensus 136 ~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~ 175 (394)
T PRK11652 136 LLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV 175 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 7778888999999999998888889999998876654433
No 25
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.68 E-value=1.8e-15 Score=141.00 Aligned_cols=172 Identities=9% Similarity=0.082 Sum_probs=140.1
Q ss_pred cCcccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHH
Q 022513 7 GIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL 86 (296)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~ 86 (296)
+...+.+++.........+.+.+..+.. .+...++.+++|.+..+.++..+++.++..++.++.|+++|| +|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~ 87 (426)
T PRK12307 10 SEITRPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMM 87 (426)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHH
Confidence 3344455666665555666666655443 455566788999999999999999999999999999999999 79999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhh
Q 022513 87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS 166 (296)
Q Consensus 87 ~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~ 166 (296)
++.++..++.+++..+. +...++++|++.|+|.|...+....++.|.+|+++ |++
T Consensus 88 ~~~~~~~~~~~~~~~~~-------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~ 142 (426)
T PRK12307 88 WSIVAYSVGTGLSGLAS-------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSK 142 (426)
T ss_pred HHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhH
Confidence 99999998887766653 35678999999999999999999999999998654 677
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHH
Q 022513 167 YFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVA 205 (296)
Q Consensus 167 ~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~ 205 (296)
..++++.+..+|..+++.+.+++.+..+|++.|++....
T Consensus 143 ~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 143 ASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 888888889999999998888888888999999875443
No 26
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.68 E-value=2e-15 Score=140.84 Aligned_cols=152 Identities=14% Similarity=0.115 Sum_probs=124.1
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCc
Q 022513 42 FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKG 121 (296)
Q Consensus 42 l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (296)
+.+++|.+..+.++.++++.++..++.+++|+++|| +|||+++..+.++..++.+++..+.
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~------------------ 102 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTT------------------ 102 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence 567899999999999999999999999999999999 7999999999988888877766542
Q ss_pred chHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHH
Q 022513 122 AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLI 201 (296)
Q Consensus 122 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i 201 (296)
+...++++|+++|++.+...+...+++.|.+|+++ +++.++.+....++|..++|.+++++.+..||++.|++
T Consensus 103 -~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 103 -SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45678999999999988666666788889988654 56677777888899999999999888888899999998
Q ss_pred HHHHHHHHHHHHHhcCCc
Q 022513 202 SSVATLIGLIALAIGKPF 219 (296)
Q Consensus 202 ~~~~~~~~~i~~~~~~~~ 219 (296)
.++..+++.+..+...|+
T Consensus 176 ~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 176 IAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 877666555443333333
No 27
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.68 E-value=1.8e-15 Score=138.47 Aligned_cols=175 Identities=15% Similarity=0.088 Sum_probs=139.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
+++.++.+.+..+....+.....+.+| .+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHH
Confidence 344455555555555555544444444 4677899999999999999999999999999999999 79999999999888
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.++.+++..+. +...+++.|++.|++.+...+...+++.|.+|+++ |++.++..+
T Consensus 81 ~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 135 (385)
T TIGR00710 81 ALSSLGLALSN-------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILM 135 (385)
T ss_pred HHHHHHHHHHc-------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHH
Confidence 88877765542 35678889999999999999999999999998543 788888888
Q ss_pred HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022513 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA 214 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 214 (296)
....+|..+++.+++++.+..+|+..|.+.++..++..+..+
T Consensus 136 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (385)
T TIGR00710 136 PVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIF 177 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988888999999887766555444433
No 28
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.68 E-value=1.6e-15 Score=139.79 Aligned_cols=171 Identities=12% Similarity=0.085 Sum_probs=139.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
+.++.+....+......+...+.++. +.+++|.+.++.++..+.+.++..++.++.|+++|| +|||+++.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHH
Confidence 45566666777777766666666655 567899999999999999999999999999999999 7999999999999988
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 174 (296)
+.+++..+. +.+.+++.|++.|++.|...+...+++.|.+|+++ |++.++.+..+
T Consensus 81 ~~~l~~~~~-------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 135 (382)
T PRK10091 81 GNAMFTLSS-------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSG 135 (382)
T ss_pred HHHHHHHhC-------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHH
Confidence 887766542 45788899999999999887888888888887543 66777777788
Q ss_pred HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
..+|..+++.+++++.+..+||+.|.+.++..++..+.
T Consensus 136 ~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 136 MTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 89999999999999888889999999887765544443
No 29
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.67 E-value=1.5e-15 Score=137.46 Aligned_cols=171 Identities=12% Similarity=0.070 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHH
Q 022513 20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML 99 (296)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~ 99 (296)
++...++..++.......++.|.. +++.+..+.+++.++..++..++.++.|+++|| +|||+++..+.++..++.++.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHH
Confidence 344555666665555566666665 578999999999999999999999999999999 799999999988887777666
Q ss_pred HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 022513 100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA 179 (296)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 179 (296)
....... ..+...++++|++.|++.+...+...++++|.+|+++ |++.+++.+...++|.
T Consensus 82 ~~~~~~~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~ 141 (365)
T TIGR00900 82 PFVALLG--------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFY 141 (365)
T ss_pred HHHHHcC--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHH
Confidence 5543211 1246788899999999999999999999999998543 7888899999999999
Q ss_pred HHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 180 MIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 180 ~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
.++|.+++++.+..+|++.|++.++..++..+.
T Consensus 142 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 142 IVGPGIGGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999988889999998877655554433
No 30
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.67 E-value=2.1e-15 Score=139.73 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=139.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513 12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL 91 (296)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~ 91 (296)
.+|..+....+..+++....+......+ .+.+++|.++.+.+++.+...++..++.++.|+++|| +|||+++..+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 89 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVAL 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHH
Confidence 4566666666677777776655554444 4567899999999999999999999999999999999 7999999999888
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
..++.+++..+. +...+++.|++.|++.+...+...+++.|.+|+++ |++..+++
T Consensus 90 ~~~~~~~~~~~~-------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 144 (406)
T PRK11551 90 FGLFSLATAQAW-------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLM 144 (406)
T ss_pred HHHHHHHHHHhc-------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence 877766555432 35678889999999999988999999999998554 78888888
Q ss_pred HHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHH
Q 022513 172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL 210 (296)
Q Consensus 172 ~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~ 210 (296)
+...++|..+++.++..+.+..+|++.|++.+++.++..
T Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (406)
T PRK11551 145 YCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLV 183 (406)
T ss_pred HHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence 889999999999888888888899999988766544433
No 31
>TIGR00895 2A0115 benzoate transport.
Probab=99.67 E-value=1.6e-15 Score=138.92 Aligned_cols=170 Identities=15% Similarity=0.111 Sum_probs=134.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513 12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL 91 (296)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~ 91 (296)
.+|+.+.......+......+ ......+++.+++|.+..+.+++.+...++..++.++.|+++|| +|||+++..+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~ 91 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILL 91 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHH
Confidence 345554444444455544443 33444556778899999999999999999999999999999999 7999999999888
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
..++.+++.... +...+++.+++.|++.+...+...++++|.+|+++ |++..+++
T Consensus 92 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 146 (398)
T TIGR00895 92 FSVFTLLCALAT-------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLM 146 (398)
T ss_pred HHHHHHHHHHcc-------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhH
Confidence 887776655432 34678889999999999999999999999998544 78888888
Q ss_pred HHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHH
Q 022513 172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLI 208 (296)
Q Consensus 172 ~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~ 208 (296)
+....+|..+++.+.+++.+..+|+..|.+.+++.++
T Consensus 147 ~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 183 (398)
T TIGR00895 147 FCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLL 183 (398)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHH
Confidence 8899999999999999998888999988877544433
No 32
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.67 E-value=1.6e-15 Score=143.60 Aligned_cols=169 Identities=8% Similarity=0.064 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHH
Q 022513 18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV 97 (296)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~ 97 (296)
..+....+...+..... ....+.+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIV-NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHH
Confidence 33444455555554333 344455678899999999999999999999999999999999 7999999999999988887
Q ss_pred HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHH
Q 022513 98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL 177 (296)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (296)
++..+. +...++++|++.|++.+...+...+++.|.+|+++ |++..+.++....+
T Consensus 83 ~~~~~~-------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~ 137 (485)
T TIGR00711 83 LCGVAP-------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLV 137 (485)
T ss_pred HHhCcC-------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 765432 35678899999999999999999999999998543 78888888889999
Q ss_pred HHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513 178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 178 G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 213 (296)
|..++|.+++++.++.+|++.|++.+.+.++..+..
T Consensus 138 g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~ 173 (485)
T TIGR00711 138 APALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVA 173 (485)
T ss_pred HhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHH
Confidence 999999999999999999999988766555444433
No 33
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.66 E-value=2.8e-15 Score=142.51 Aligned_cols=175 Identities=13% Similarity=0.145 Sum_probs=140.7
Q ss_pred CcccCcccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhH
Q 022513 4 KVAGIKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFA 83 (296)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~ 83 (296)
|..+..++.+|+.+..+....+...+..... ..+..++.+++|++..+.++..+.+.++..++.+++|+++|| +|||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~ 86 (496)
T PRK03893 9 PWYRHLNRAQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRL 86 (496)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHH
Confidence 3344445556676666555556666655444 444556778999999999999999999999999999999999 79999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhh
Q 022513 84 TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA 163 (296)
Q Consensus 84 ~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~ 163 (296)
++.++.++..++.+++.... +...+++.|++.|++.++..+...+++.|.+|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------ 141 (496)
T PRK03893 87 AMVISIVLFSVGTLACGFAP-------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------ 141 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------
Confidence 99999988888887766542 35678899999999999988999999999998543
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHH
Q 022513 164 LASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVA 205 (296)
Q Consensus 164 r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~ 205 (296)
|+...+.++...++|..+++.+.+++.+..+|++.|.+.++.
T Consensus 142 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 142 RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 677888888889999999999999998889999998875443
No 34
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.66 E-value=4.6e-15 Score=139.17 Aligned_cols=160 Identities=11% Similarity=0.060 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 022513 23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQ 102 (296)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~ 102 (296)
..++..+..+.....++. +.+++|+|..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.+++..+
T Consensus 31 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~ 108 (434)
T PRK11663 31 GYALFYFTRKSFNAAMPE-MLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFS 108 (434)
T ss_pred HHHHHHHhhhhHHHhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHH
Confidence 333333333344445554 456799999999999999999999999999999999 799999999999888887766554
Q ss_pred hhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Q 022513 103 AYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIG 182 (296)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~ 182 (296)
. +...+++.|++.|++.|...+...++++|++|+++ |++..++++.+.++|..++
T Consensus 109 ~-------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~ 163 (434)
T PRK11663 109 S-------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALI 163 (434)
T ss_pred h-------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 3 35677788999999998888888999999998544 7888899999999999999
Q ss_pred HhhhhhhccccchhHHHHHHHHHHHHH
Q 022513 183 VTAIVYVFIDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 183 ~~~~~~l~~~~gw~~~f~i~~~~~~~~ 209 (296)
+.+.+++.+..+||+.|.+.++..++.
T Consensus 164 ~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 164 PLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 999999988899999998877654433
No 35
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.66 E-value=3.9e-15 Score=138.09 Aligned_cols=174 Identities=16% Similarity=0.142 Sum_probs=131.5
Q ss_pred CchhHHHHHHHHHHHHHHH---HHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGF---IANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG 89 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~ 89 (296)
+.+.++..+...+.+...+ ....+.++. +.+++|.+..+.++..+.+.++..++.++.|+++|| +|||+++.++.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~ 85 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGV 85 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHH
Confidence 3444454444444444333 333334443 557899999999999999999999999999999999 79999999998
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513 90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN 169 (296)
Q Consensus 90 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~ 169 (296)
.+..++.++...+. +...+++.|++.|++.+...+...+.+.|.+|+++ |.+..+
T Consensus 86 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~ 140 (406)
T PRK15402 86 AFFILTCLAILLAQ-------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITA 140 (406)
T ss_pred HHHHHHHHHHHHHc-------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHH
Confidence 88888777655432 34678889999999998887888889999988643 456666
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513 170 FYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 170 ~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 213 (296)
+.+....+|..++|.+++++.++.+|++.|++.+++.++..+..
T Consensus 141 ~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK15402 141 LMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGL 184 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 66666778889999999988888899999988777665554433
No 36
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.66 E-value=5.7e-15 Score=138.38 Aligned_cols=168 Identities=16% Similarity=0.159 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHhHHhHHHHhhhhcC---CChhhHHHHHHHH---HHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 23 LSALENMGFIANGISMVLYFKNEMH---FDIAGASNTLTNF---FGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~yl~~~l~---~s~~~a~~~~~~~---~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
..+++..... ...++..++.++++ .+..+.+.....+ .++..++.+++|+++|| +|||+++..+.+++.++.
T Consensus 30 ~~~~~~~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~ 107 (432)
T PRK10406 30 GNLVEWFDFY-VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFGS 107 (432)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHH
Confidence 3555555543 35566677888874 4454433333333 34445899999999999 799999999999999988
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
++..++.+.... ...+...+++.|+++|+|.|+..+...++++|.+|+++ |+...+..+.+.+
T Consensus 108 ~~~~~~~~~~~~-----------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~ 170 (432)
T PRK10406 108 LVIACLPGYETI-----------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLI 170 (432)
T ss_pred HHHhhcCCchhH-----------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHH
Confidence 877664321100 00123468899999999999999999999999999765 6777777777778
Q ss_pred HHHHHHHhhhhhhc--------cccchhHHHHHHHHHHHHH
Q 022513 177 LAAMIGVTAIVYVF--------IDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 177 ~G~~i~~~~~~~l~--------~~~gw~~~f~i~~~~~~~~ 209 (296)
.|..+++.+...+. ..+|||++|.+.++..++.
T Consensus 171 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 171 GGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 88777766544332 2579999998876655443
No 37
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.66 E-value=3.2e-15 Score=137.36 Aligned_cols=149 Identities=12% Similarity=0.052 Sum_probs=115.8
Q ss_pred HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513 36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK 115 (296)
Q Consensus 36 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 115 (296)
....+.+++++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++..+......+.+ .....
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~-~~~~~------------ 76 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAG-RLLDP------------ 76 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH-HHHHh------------
Confidence 334455678999999999999999999999999999999999 6999887655544444322 11111
Q ss_pred CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccch
Q 022513 116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGW 195 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw 195 (296)
.+...++++|++.|+|.|.. .+.....+|.+|+++ |++..+..+.+..+|..+++.+++++.++.||
T Consensus 77 ------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gW 143 (368)
T TIGR00903 77 ------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGL 143 (368)
T ss_pred ------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 24578999999999999864 455555689988543 78889999999999999999999999888999
Q ss_pred hHHHHHHHHHHHHHHH
Q 022513 196 WLGFLISSVATLIGLI 211 (296)
Q Consensus 196 ~~~f~i~~~~~~~~~i 211 (296)
|+.|.+.+++.++..+
T Consensus 144 r~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 144 QLLIIPIAAVAAAGII 159 (368)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999886665544433
No 38
>PRK03699 putative transporter; Provisional
Probab=99.65 E-value=1.4e-14 Score=134.01 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=135.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513 12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL 91 (296)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~ 91 (296)
+++|..+...+..++.....+.....++. +.+++|+|.++.+++.+.+.++..++.+++|+++|| +|||+++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence 45666666556666665655555555555 667899999999999999999999999999999999 7999999999888
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
..++.++...+. +...+++.|++.|++.|...+...+++.|.+|+++ |+...+..
T Consensus 82 ~~i~~~l~~~~~-------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~ 136 (394)
T PRK03699 82 MILAVAGLMFSH-------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFT 136 (394)
T ss_pred HHHHHHHHHHcc-------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHH
Confidence 888877665532 35678899999999999888888899999997644 66776666
Q ss_pred HHHHHHHHHHHHhhhhhhc-cccchhHHHHHHHHHHHHHHH
Q 022513 172 LFATTLAAMIGVTAIVYVF-IDQGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 172 ~~~~~~G~~i~~~~~~~l~-~~~gw~~~f~i~~~~~~~~~i 211 (296)
+....+|+.++|.+.+++. +..+||+.|.+.+++.++..+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~ 177 (394)
T PRK03699 137 DSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 6777888888888887765 457999999887766554443
No 39
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.65 E-value=2.5e-15 Score=142.13 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=116.3
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCCCCcCCcchH
Q 022513 46 MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYS-KSLHPPDCGKSSCLKGAIA 124 (296)
Q Consensus 46 l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 124 (296)
++.++.+.+++.+.+.++..++++++|+++|| +|||+++.++.+++.++.+....+... .... ..+....
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~--------~~~~~~~ 120 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIG--------PDNTGYV 120 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhcccccccc--------ccchhHH
Confidence 38888999999999999999999999999999 799999999999988887766543210 0000 0011234
Q ss_pred HHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc--------cccchh
Q 022513 125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF--------IDQGWW 196 (296)
Q Consensus 125 ~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~--------~~~gw~ 196 (296)
..++++|++.|++.|+..+..+++++|.+|+++ |+...+.+..+..+|..+++.++..+. +..|||
T Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr 194 (479)
T PRK10077 121 PEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWR 194 (479)
T ss_pred HHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChH
Confidence 677899999999999999999999999999654 788888888888889888876654332 356899
Q ss_pred HHHHHHHHHHHHHH
Q 022513 197 LGFLISSVATLIGL 210 (296)
Q Consensus 197 ~~f~i~~~~~~~~~ 210 (296)
+.|++.++..++..
T Consensus 195 ~~f~~~~~~~~~~~ 208 (479)
T PRK10077 195 YMFASEAIPALLFL 208 (479)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988766554443
No 40
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.65 E-value=7.7e-15 Score=133.66 Aligned_cols=159 Identities=11% Similarity=0.033 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
.+......+......+...+.++.++++++|+|..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHH
Confidence 3444445555555666666777767999999999999999999999999999999999999 799999999999998888
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
+++..+. .+...++++|++.|++.+.. +...++++|.+|+++ |+...+++....+
T Consensus 82 ~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~ 136 (366)
T TIGR00886 82 LWAGLAV------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGN 136 (366)
T ss_pred HHHHHHh------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhH
Confidence 7766542 03567888999999986644 556788999998654 6777777776666
Q ss_pred HHHHHHHhhhhhhcc----------ccchhHHHHH
Q 022513 177 LAAMIGVTAIVYVFI----------DQGWWLGFLI 201 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~----------~~gw~~~f~i 201 (296)
+|..+++.+.+.+.. ..+|++.|++
T Consensus 137 ~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 137 MGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 777666666554432 2479998843
No 41
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.64 E-value=6.8e-15 Score=136.23 Aligned_cols=151 Identities=12% Similarity=0.136 Sum_probs=124.1
Q ss_pred HHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 022513 30 GFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLH 109 (296)
Q Consensus 30 ~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~ 109 (296)
.++.+...+| .+.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++..+..+..++.++..+++
T Consensus 24 ~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~------ 95 (393)
T PRK09705 24 LLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYP------ 95 (393)
T ss_pred hhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCc------
Confidence 3344444444 4778999999999999999999999999999999999 7999999999999999998877653
Q ss_pred CCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 022513 110 PPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV 189 (296)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l 189 (296)
++..++++|++.|+|.+...+..+..+.|.+| ++ |+...+.+..+.++|..+++.+++++
T Consensus 96 -------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l 155 (393)
T PRK09705 96 -------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWL 155 (393)
T ss_pred -------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999988898999999886 32 67777888888889999999888888
Q ss_pred cccc-chhHHHHHHHHHHHH
Q 022513 190 FIDQ-GWWLGFLISSVATLI 208 (296)
Q Consensus 190 ~~~~-gw~~~f~i~~~~~~~ 208 (296)
.++. +||..+.+.++..++
T Consensus 156 ~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 156 VQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 7764 899877655444333
No 42
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.64 E-value=4.2e-15 Score=135.45 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=129.1
Q ss_pred hHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 022513 37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS 116 (296)
Q Consensus 37 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 116 (296)
...+++.+++|.+..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.+++..+.
T Consensus 15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~------------- 80 (399)
T TIGR00893 15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAG------------- 80 (399)
T ss_pred HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHc-------------
Confidence 33455788999999999999999999999999999999999 7999999999988888877766542
Q ss_pred CcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchh
Q 022513 117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWW 196 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~ 196 (296)
+...++++|++.|++.+...+...++++|.+|+++ |++.+++.+...++|..+++.+.+++.+..+|+
T Consensus 81 ------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 148 (399)
T TIGR00893 81 ------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQ 148 (399)
T ss_pred ------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCch
Confidence 35678899999999999999999999999998543 788889989999999999999999888888999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022513 197 LGFLISSVATLIGLIAL 213 (296)
Q Consensus 197 ~~f~i~~~~~~~~~i~~ 213 (296)
+.|.+.++..++..+..
T Consensus 149 ~~~~~~~~~~~~~~~~~ 165 (399)
T TIGR00893 149 WAFIIEGVLGIIWGVLW 165 (399)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99988776655544433
No 43
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.63 E-value=5.5e-15 Score=134.39 Aligned_cols=150 Identities=11% Similarity=0.052 Sum_probs=125.4
Q ss_pred hHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 022513 37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS 116 (296)
Q Consensus 37 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 116 (296)
...+++.+++|++..+.+++.+...++..++.+++|+++|| +|||+++.++.++..++.+++..+.
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~------------- 81 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFST------------- 81 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhh-------------
Confidence 33457888999999999999999999999999999999999 7999999999999888887766543
Q ss_pred CcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH-hhhhhhccccch
Q 022513 117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV-TAIVYVFIDQGW 195 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~-~~~~~l~~~~gw 195 (296)
+...+++.|++.|++.+...+...++++|.+|+++ |++..++.+.+.++|..+++ .+...+.+..+|
T Consensus 82 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 149 (379)
T TIGR00881 82 ------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW 149 (379)
T ss_pred ------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCc
Confidence 35678899999999999999999999999998654 67777888888899999998 466666677899
Q ss_pred hHHHHHHHHHHHHHHHH
Q 022513 196 WLGFLISSVATLIGLIA 212 (296)
Q Consensus 196 ~~~f~i~~~~~~~~~i~ 212 (296)
++.|.+.+++.++..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~ 166 (379)
T TIGR00881 150 HWVFIVPGIIAIIVSLI 166 (379)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99998877665544333
No 44
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.63 E-value=1.5e-14 Score=138.65 Aligned_cols=161 Identities=16% Similarity=0.194 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHH
Q 022513 52 GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSL 131 (296)
Q Consensus 52 ~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (296)
+.+++.+...+++.++.+++|+++|+ +|||++++++.+++.+|.+++..+. +..++++||
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~-------------------~~~~l~~GR 149 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAP-------------------SWYQLIVGR 149 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHH
Confidence 34799999999999999999999999 7999999999999999999988774 467899999
Q ss_pred HHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc--cchhHHHHHHHHH---H
Q 022513 132 YLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID--QGWWLGFLISSVA---T 206 (296)
Q Consensus 132 ~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~--~gw~~~f~i~~~~---~ 206 (296)
++.|+|.|+.....+.+++|..|++. |+...+.++...++|..++.. .++...+ .+||..+.+..+. .
T Consensus 150 ~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~~ 222 (513)
T KOG0254|consen 150 ILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYC-INYGTSKVYAGWRIPLGLALIPAVIL 222 (513)
T ss_pred HHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHH-HhhhhccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999998765 899999999999999999854 4444333 4899777755443 3
Q ss_pred HHHHHHHHhcCCceeecCCCCChhhhhhhhhccC
Q 022513 207 LIGLIALAIGKPFYRIQQPGESPLVRVAQVPHSL 240 (296)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~ 240 (296)
.+. ..+.+++|+|..++.+.+..++..+.++..
T Consensus 223 ~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~ 255 (513)
T KOG0254|consen 223 ALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGL 255 (513)
T ss_pred HHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCC
Confidence 333 455669999998866655555555555553
No 45
>PRK11043 putative transporter; Provisional
Probab=99.63 E-value=1.9e-14 Score=133.17 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhHHhHHHH--hhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 022513 24 SALENMGFIANGISMVLY--FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTI 101 (296)
Q Consensus 24 ~~~~~~~~~~~~~~l~~y--l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~ 101 (296)
......++.+...++|.+ +.+++|.+..+.++..+++.++..++.+++|+++|| +|||+++..+.++..++.++...
T Consensus 12 ~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~ 90 (401)
T PRK11043 12 AGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLW 90 (401)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445543 678999999999999999999999999999999999 79999999998888877766554
Q ss_pred HhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 022513 102 QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI 181 (296)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 181 (296)
+. +...+++.|++.|++.+...+...+++.|.+|+++ +++.++..+...++|..+
T Consensus 91 ~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 145 (401)
T PRK11043 91 VE-------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPAL 145 (401)
T ss_pred hc-------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHH
Confidence 32 35678889999999988777777788899988543 455666666677889999
Q ss_pred HHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 182 GVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 182 ~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
+|.+++++.+..+|++.|.+.+++.++..+.
T Consensus 146 g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~ 176 (401)
T PRK11043 146 APLLGAWLLNHFGWQAIFATLFAITLLLILP 176 (401)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 9999999988899999998877665554433
No 46
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.62 E-value=2.2e-14 Score=130.99 Aligned_cols=167 Identities=14% Similarity=0.054 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH-HHHHHHHHHHHHH
Q 022513 22 VLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV-FGTLEVLSLVMLT 100 (296)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~-~~~~~~ig~~~~~ 100 (296)
+..++...+.....+.++.|+++++|.|..+.+++.+.+.+...+..++.|+++|| +||||.++. +.++..++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHH
Confidence 34666777777778889999999999999999999999999999999999999999 799887655 4444444544443
Q ss_pred HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 022513 101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM 180 (296)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 180 (296)
.+. +...+++.|++.+.+.+...+...++..|..|++. +.+....+..+...++|..
T Consensus 83 ~~~-------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~ 139 (375)
T TIGR00899 83 WNR-------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG----REAVMFSSVMRAQISLAWV 139 (375)
T ss_pred hcc-------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHHhHHHH
Confidence 321 34567777888877777777777777778765332 1122234556667889999
Q ss_pred HHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 181 IGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 181 i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
++|.+++++.+..+||+.|++.+++.++..+.
T Consensus 140 ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~ 171 (375)
T TIGR00899 140 IGPPLAFWLALGFGFTVMFLTAALAFVLCGVL 171 (375)
T ss_pred HhhhHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999887765554443
No 47
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.62 E-value=1e-14 Score=132.53 Aligned_cols=149 Identities=17% Similarity=0.131 Sum_probs=122.1
Q ss_pred HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513 36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK 115 (296)
Q Consensus 36 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 115 (296)
..+.+++.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.+++..+.
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~------------ 89 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIAD------------ 89 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHH------------
Confidence 445567888999999999999999999999999999999999 7999999999999999887776653
Q ss_pred CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccch
Q 022513 116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGW 195 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw 195 (296)
+...++++|.+.|++.+...+.......|.+|+ + |+...+++..+.++|..+++.+.+.+.+..+|
T Consensus 90 -------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 155 (377)
T TIGR00890 90 -------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K------RGLASGIIIGGYGLGSFILSPLITSVINLEGV 155 (377)
T ss_pred -------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccH
Confidence 456788999999999988777777778888763 2 67777888888888887766666666667799
Q ss_pred hHHHHHHHHHHHHHHH
Q 022513 196 WLGFLISSVATLIGLI 211 (296)
Q Consensus 196 ~~~f~i~~~~~~~~~i 211 (296)
|+.|.+.+++.++..+
T Consensus 156 ~~~f~~~~~~~~~~~~ 171 (377)
T TIGR00890 156 PAAFIYMGIIFLLVIV 171 (377)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999987776555443
No 48
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.62 E-value=3.6e-14 Score=132.28 Aligned_cols=170 Identities=16% Similarity=0.106 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
++.+....+...+. +++...+.+.+++++|++..+.+++.+.+.++..++.++.|++.|| +|||+++.++.+++.++.
T Consensus 5 ~~~~~~~f~~~G~~-~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFA-NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHH
Confidence 34444444444444 3555555567789999999999999999999999999999999999 799999999999999998
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
+++..+.. ..++..++++|++.|+|.|...+..++++.+..|+++ +++..+..+...+
T Consensus 83 ~l~~~~~~----------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 140 (410)
T TIGR00885 83 FLFWPAAE----------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNP 140 (410)
T ss_pred HHHHHHHh----------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHH
Confidence 77544321 1246788899999999999999999999999887554 4555667777788
Q ss_pred HHHHHHHhhhhhhcc--------------------------ccchhHHHHHHHHHHHHHH
Q 022513 177 LAAMIGVTAIVYVFI--------------------------DQGWWLGFLISSVATLIGL 210 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~--------------------------~~gw~~~f~i~~~~~~~~~ 210 (296)
+|..++|.+.+.+.. ..+||++|.+.+++.++..
T Consensus 141 lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 141 FGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877765521 2469999987776554433
No 49
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.62 E-value=4e-14 Score=130.95 Aligned_cols=173 Identities=15% Similarity=0.035 Sum_probs=132.2
Q ss_pred CCchh-HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhh-----HHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHH
Q 022513 12 GGFRA-CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAG-----ASNTLTNFFGSTFLLCLVGGFISDTYLSRFATC 85 (296)
Q Consensus 12 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~-----a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i 85 (296)
.+|++ ...+....++...++......++.|++ ++|.+..+ .+.+.++..++..++.++.|+++|| +|||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~ 87 (408)
T PRK09874 10 INWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIML 87 (408)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHH
Confidence 34544 444445667777777777778888875 58887654 3677788888899999999999999 7999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhh
Q 022513 86 LVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALA 165 (296)
Q Consensus 86 ~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~ 165 (296)
..+.++..++.+++.... +...+++.|++.|++.+ ..+....++.|.+|+++ |+
T Consensus 88 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~ 141 (408)
T PRK09874 88 LRSALGMGIVMVLMGLAQ-------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SG 141 (408)
T ss_pred HHHHHHHHHHHHHHHHHh-------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hh
Confidence 998888887776655432 35678889999998755 45666778888887543 67
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 166 SYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 166 ~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
+..+.++...++|..++|.+.+.+.+..+|++.|.+.+++.++..+.
T Consensus 142 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 188 (408)
T PRK09874 142 WALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLV 188 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 77888888889999999999999888889999998877765554443
No 50
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.61 E-value=3.7e-14 Score=127.38 Aligned_cols=165 Identities=19% Similarity=0.191 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHH
Q 022513 20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML 99 (296)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~ 99 (296)
+....+....+.+.....++.|. +++|.+..+.++..+...++..++.++.|+++|| +|||+.+.++.++..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHH
Confidence 44556667777766767777766 5679999999999999999999999999999999 799999999999998888776
Q ss_pred HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 022513 100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA 179 (296)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 179 (296)
.... +...+++.|++.|++.+...+...++..|.+|+++ |++.+++.+...++|.
T Consensus 82 ~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~ 136 (352)
T cd06174 82 AFAS-------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGA 136 (352)
T ss_pred HHhc-------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHH
Confidence 6542 35678899999999999999999999999999754 7888899999999999
Q ss_pred HHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513 180 MIGVTAIVYVFIDQGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 180 ~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i 211 (296)
.+++.+.+.+.+..+|++.+.+.++..++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (352)
T cd06174 137 LLGPLLGGLLAESLGWRWLFLILAILGLLLAL 168 (352)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999998888899999887766555443
No 51
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.61 E-value=3.5e-14 Score=131.10 Aligned_cols=166 Identities=13% Similarity=0.165 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 022513 19 FVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVM 98 (296)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~ 98 (296)
...+..+....+.......+|. +.+++|.+..+.++..+.+.++..++.++.|+++|| +|||+.+..+.++..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHH
Confidence 3344445555554444445554 567799999999999999999999999999999999 79999999999888888776
Q ss_pred HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513 99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA 178 (296)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G 178 (296)
+..+. +...++++|++.|++.+...+...+++.|.+|+++ |++..+..+...++|
T Consensus 85 ~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~ 139 (392)
T PRK10473 85 CSLAE-------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCII 139 (392)
T ss_pred HHHhC-------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHH
Confidence 65432 34567889999999999888888999999998544 788888888888899
Q ss_pred HHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513 179 AMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 179 ~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i 211 (296)
..++|.+++.+.+..+|++.|++.+++.++..+
T Consensus 140 ~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~ 172 (392)
T PRK10473 140 PVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLL 172 (392)
T ss_pred HHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHH
Confidence 999999988887788999998887765554443
No 52
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.61 E-value=1.2e-14 Score=136.12 Aligned_cols=139 Identities=15% Similarity=0.222 Sum_probs=116.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHH
Q 022513 48 FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYF 127 (296)
Q Consensus 48 ~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (296)
.+..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.++...... ..+...+
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 130 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF----------------ALSVEML 130 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc----------------ccchHHH
Confidence 337899999999999999999999999999 79999999999999888877655421 1234578
Q ss_pred HHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhh---hhhccccchhHHHHHHHH
Q 022513 128 YGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI---VYVFIDQGWWLGFLISSV 204 (296)
Q Consensus 128 ~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~---~~l~~~~gw~~~f~i~~~ 204 (296)
+++|++.|+|.|...+...++++|.+|+++ |+...++++.+.++|..+++.++ ....+..+||+.|++.++
T Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~ 204 (481)
T TIGR00879 131 IVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI 204 (481)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH
Confidence 899999999999999999999999998665 78888888889999999999888 666667899999998655
Q ss_pred HHHHH
Q 022513 205 ATLIG 209 (296)
Q Consensus 205 ~~~~~ 209 (296)
..++.
T Consensus 205 ~~~~~ 209 (481)
T TIGR00879 205 PAGLL 209 (481)
T ss_pred HHHHH
Confidence 44443
No 53
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.61 E-value=1.5e-15 Score=141.97 Aligned_cols=166 Identities=14% Similarity=0.196 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHH
Q 022513 54 SNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYL 133 (296)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (296)
+.+++++.+++++|..++|+++|| +|||.++.++.++..++.+++..+... .+..++++||++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~----------------~~~e~li~GR~i 125 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSA----------------PSFEMLILGRLI 125 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHH
Confidence 556888999999999999999999 799999999999998888887776432 346789999999
Q ss_pred HHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhh-hhhc-cccchhHHHHHHHHHHH--HH
Q 022513 134 YSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI-VYVF-IDQGWWLGFLISSVATL--IG 209 (296)
Q Consensus 134 ~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~-~~l~-~~~gw~~~f~i~~~~~~--~~ 209 (296)
.|+..|......+.|+.|..|++- ||..-....++.++|..++..++ ..+. +...|++.+....+..+ +.
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~ 199 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA 199 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999776 78877777888999999885554 3333 34569888877766443 34
Q ss_pred HHHHHhcCCceeec-CCCCChhhhhhhhhccCCC
Q 022513 210 LIALAIGKPFYRIQ-QPGESPLVRVAQVPHSLPI 242 (296)
Q Consensus 210 ~i~~~~~~~~~~~~-~~~~~~~~~~~~vl~~~~~ 242 (296)
...+++++|+|+.. +.+.++.++..+.+|...+
T Consensus 200 ~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~ 233 (485)
T KOG0569|consen 200 LLPFLPESPKYLLIKKGDEEEARKALKFYRGKED 233 (485)
T ss_pred HHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCc
Confidence 55678899999886 6666666666666655543
No 54
>PRK09952 shikimate transporter; Provisional
Probab=99.61 E-value=3.5e-14 Score=133.43 Aligned_cols=177 Identities=18% Similarity=0.171 Sum_probs=120.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhc--CCChhhHHHHH-----HHHHHHHHHHHhHHHHHhhhcCchhHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEM--HFDIAGASNTL-----TNFFGSTFLLCLVGGFISDTYLSRFATC 85 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--~~s~~~a~~~~-----~~~~~~~~~~~l~~G~laDr~~GRr~~i 85 (296)
++|.........+++...........+.+..+++ +.++.. +... ++..++..++.++.|+++|| +|||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l 97 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHH
Confidence 4555555555666666665444334444555554 666653 3332 22334456778889999999 7999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhh
Q 022513 86 LVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALA 165 (296)
Q Consensus 86 ~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~ 165 (296)
.++.+++.++.+++.++.+.... .......+++.|++.|++.|+..+....+++|.+|+++ |+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg 160 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFSTI-----------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KA 160 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHH-----------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------Cc
Confidence 99999999988877665321100 00012257889999999999999999999999999764 67
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhc--------cccchhHHHHHHHHHHHH
Q 022513 166 SYFNFYLFATTLAAMIGVTAIVYVF--------IDQGWWLGFLISSVATLI 208 (296)
Q Consensus 166 ~~~~~~~~~~~~G~~i~~~~~~~l~--------~~~gw~~~f~i~~~~~~~ 208 (296)
...+..+.+..+|..++..+..++. ...|||..|.+.++..++
T Consensus 161 ~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 161 FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 7777777777888877765555443 247999999887665433
No 55
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.60 E-value=3.8e-14 Score=134.98 Aligned_cols=175 Identities=14% Similarity=0.080 Sum_probs=122.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhh-HHH-----HHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH
Q 022513 14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAG-ASN-----TLTNFFGSTFLLCLVGGFISDTYLSRFATCLV 87 (296)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~-a~~-----~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~ 87 (296)
++......+..+++.+.+ ++..+...++.++++.+... ..+ +.++..++..+++++.|+++|| +|||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDF-GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence 455555556667777664 44556666788877643322 111 1355667788999999999999 799999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513 88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY 167 (296)
Q Consensus 88 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~ 167 (296)
+.+++.++.+++.++.++.... ......+++.|+++|+|.|+..+...++++|.+|+++ |+..
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g-----------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~ 155 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIG-----------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFM 155 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHH-----------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHH
Confidence 9999999988877653211000 0001247899999999999999999999999999765 6777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc--------cccchhHHHHHHHHHHH
Q 022513 168 FNFYLFATTLAAMIGVTAIVYVF--------IDQGWWLGFLISSVATL 207 (296)
Q Consensus 168 ~~~~~~~~~~G~~i~~~~~~~l~--------~~~gw~~~f~i~~~~~~ 207 (296)
.++...+..+|..+++.+...+. .++|||+.|++.++..+
T Consensus 156 ~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 156 GSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 77777677777777665443321 25799999998665443
No 56
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.60 E-value=4.3e-14 Score=130.14 Aligned_cols=154 Identities=9% Similarity=0.094 Sum_probs=128.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
..|.++.++...++...+...+.+.++.|++ ++|.|..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~ 81 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIF 81 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHH
Confidence 3466788888888888887777788888776 679999999999999999999999999999999 79999999999998
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.++.+....+. +...+++.|++.|++.+...+...+...|..++++ |++.++.++
T Consensus 82 ~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 136 (381)
T PRK03633 82 AAGCAGLGLMV-------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYM 136 (381)
T ss_pred HHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 88877665542 35678889999999999887777777777776432 678888888
Q ss_pred HHHHHHHHHHHhhhhhhcccc
Q 022513 173 FATTLAAMIGVTAIVYVFIDQ 193 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~ 193 (296)
...++|..+++.+.+.+.+..
T Consensus 137 ~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 137 MVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHHHHHHhcccccc
Confidence 899999999999998886653
No 57
>PRK10133 L-fucose transporter; Provisional
Probab=99.59 E-value=1.2e-13 Score=129.81 Aligned_cols=154 Identities=16% Similarity=0.057 Sum_probs=116.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHH
Q 022513 11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT 90 (296)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~ 90 (296)
+++...+..+....+...+........+| .+++++|.|+.+.++..+.+.++..++.++.|+++|| +|||+++..+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~ 99 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence 33455555555555666666544444444 4589999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513 91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF 170 (296)
Q Consensus 91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~ 170 (296)
++.++.+++..... ..++..++++|++.|+|.|...+..++++.|..++++ +....+.
T Consensus 100 ~~~~~~~l~~~~~~----------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~ 157 (438)
T PRK10133 100 LYALGAALFWPAAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNL 157 (438)
T ss_pred HHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHH
Confidence 99999877542221 1246788999999999999999999999998654332 3334556
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 022513 171 YLFATTLAAMIGVTAIVY 188 (296)
Q Consensus 171 ~~~~~~~G~~i~~~~~~~ 188 (296)
++....+|..+++.+++.
T Consensus 158 ~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 158 AQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666777788888776654
No 58
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.59 E-value=8.5e-14 Score=129.23 Aligned_cols=170 Identities=8% Similarity=0.009 Sum_probs=133.1
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513 10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG 89 (296)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~ 89 (296)
|-+.||.+....+..++...+.+....+++.|+ +++|.+..+.++..+.+.++..++.+++|+++|| +||||++..+.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~ 85 (402)
T TIGR00897 8 KIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGL 85 (402)
T ss_pred HcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHH
Confidence 446778888888888887777776777888887 5689999999999999999999999999999999 79999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513 90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN 169 (296)
Q Consensus 90 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~ 169 (296)
++..++.+++..... . ..+...+++.|++.|+|.+...+...+.+.|.+|+++ |++..+
T Consensus 86 ~~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g 144 (402)
T TIGR00897 86 LLWCVGHAAFIVFGL-G--------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVG 144 (402)
T ss_pred HHHHHHHHHHHHHhc-c--------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHH
Confidence 888887655432111 0 1135567788999999988776777777888887543 788888
Q ss_pred HHHHHHHHHH-HHHHhhhhhhccccchhHHHHHH
Q 022513 170 FYLFATTLAA-MIGVTAIVYVFIDQGWWLGFLIS 202 (296)
Q Consensus 170 ~~~~~~~~G~-~i~~~~~~~l~~~~gw~~~f~i~ 202 (296)
+++.+.++|. .++|.+++++.+..||+..++..
T Consensus 145 ~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~ 178 (402)
T TIGR00897 145 WFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSA 178 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 8888888886 57888888888878866555443
No 59
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.59 E-value=5.3e-14 Score=132.95 Aligned_cols=144 Identities=10% Similarity=0.025 Sum_probs=122.2
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchH
Q 022513 45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIA 124 (296)
Q Consensus 45 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (296)
+++++..+.+.+.+.+.++..++.+++|+++|| +|||+++..+.++..++.++...+.. .+.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-----------------~~~ 131 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG-----------------GGI 131 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH-----------------cCc
Confidence 688999999999999999999999999999999 79999999999888877766543321 124
Q ss_pred HHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc-cchhHHHHHHH
Q 022513 125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID-QGWWLGFLISS 203 (296)
Q Consensus 125 ~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-~gw~~~f~i~~ 203 (296)
..+++.|++.|++.+...+....+++|.+|+++ |++..++++.+.++|..+++.+.+++.+. .+|++.|.+.+
T Consensus 132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~ 205 (465)
T TIGR00894 132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFG 205 (465)
T ss_pred hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhh
Confidence 568889999999999999999999999998654 78888998899999999999999999888 49999999887
Q ss_pred HHHHHHHHH
Q 022513 204 VATLIGLIA 212 (296)
Q Consensus 204 ~~~~~~~i~ 212 (296)
+..++..++
T Consensus 206 ~~~~~~~~~ 214 (465)
T TIGR00894 206 IVGCAWSLL 214 (465)
T ss_pred HHHHHHHHH
Confidence 765544433
No 60
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.59 E-value=1e-13 Score=131.69 Aligned_cols=172 Identities=10% Similarity=0.075 Sum_probs=122.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
+++.+.......++.....++....+ +++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++..+.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHH
Confidence 44444444444444555555444333 46788999999999998888888899999999999999 79999999988888
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.++.++...+. +...+++.|++.|++.+... ....+++|.+|++. |+...+..+
T Consensus 112 ~~~~~~~~~~~-------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~g~~~ 165 (476)
T PLN00028 112 APAVFCMSLVS-------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTANGIAA 165 (476)
T ss_pred HHHHHHHHHhc-------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHHHHHH
Confidence 87776655542 34567788999999887653 34567889998654 778877776
Q ss_pred HHHHHHHHHHHhhhhhhc----c-----ccchhHHHHHHHHHHHHHHHH
Q 022513 173 FATTLAAMIGVTAIVYVF----I-----DQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~----~-----~~gw~~~f~i~~~~~~~~~i~ 212 (296)
...++|+.+++.+.+.+. + ..|||+.|.+.+++.++..+.
T Consensus 166 ~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 166 GWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGIL 214 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 666777776655544331 1 258999999887766554433
No 61
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.58 E-value=3.4e-14 Score=130.16 Aligned_cols=153 Identities=13% Similarity=0.150 Sum_probs=127.7
Q ss_pred hHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 022513 34 NGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC 113 (296)
Q Consensus 34 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~ 113 (296)
..+.++.+. +++|+++.+.++..+.+.++..++.+++|+++|| +|||+++..+.++..++.+++....
T Consensus 10 ~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~---------- 77 (377)
T PRK11102 10 YLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQ---------- 77 (377)
T ss_pred HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 445566655 5689999999999999999999999999999999 7999999999988888877766542
Q ss_pred CCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc
Q 022513 114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ 193 (296)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 193 (296)
+...+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+....+|..++|.+++++.+..
T Consensus 78 ---------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 142 (377)
T PRK11102 78 ---------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWF 142 (377)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567888999999999888889999999988554 788888888899999999999999998888
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 022513 194 GWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 194 gw~~~f~i~~~~~~~~~i~~ 213 (296)
+|++.|.+.++..++..+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 143 SWHAIFWVLALAAILAAALV 162 (377)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 99999988776655544433
No 62
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.58 E-value=9.6e-15 Score=134.37 Aligned_cols=138 Identities=33% Similarity=0.619 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhh
Q 022513 82 FATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGA 161 (296)
Q Consensus 82 r~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~ 161 (296)
+|++.++.+++++|.+++.++...+... ++.+...+++++.++++|.|+.+|++.++++||+++++ +
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~----------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~---~ 67 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLP----------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD---D 67 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT---T
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhh----------hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc---h
Confidence 4899999999999999988876433221 12345789999999999999999999999999999764 2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceeec-CCCCChhhh
Q 022513 162 KALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQ-QPGESPLVR 232 (296)
Q Consensus 162 ~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~ 232 (296)
.+|.++|+++|+++|+|+.+++.+.++++++.||.++|+++++.++++++.++.++++|... +|+++++.+
T Consensus 68 ~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~ 139 (372)
T PF00854_consen 68 SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTN 139 (372)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S-
T ss_pred hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccch
Confidence 34789999999999999999999999999999999999999999999999999999999887 677777766
No 63
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.57 E-value=2.4e-14 Score=135.52 Aligned_cols=150 Identities=7% Similarity=-0.098 Sum_probs=119.9
Q ss_pred HHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q 022513 39 VLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSC 118 (296)
Q Consensus 39 ~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 118 (296)
.+.+.+++|++..+.+++.+.+..+..++.+++|+++|| +|||+++.++.++..++.+.+.....
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-------------- 116 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLG-------------- 116 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHh--------------
Confidence 455778999999999999999999999999999999999 79999998888877776655544210
Q ss_pred CCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc---ch
Q 022513 119 LKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ---GW 195 (296)
Q Consensus 119 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~---gw 195 (296)
....+...+++.|++.|++.+...+....+++|.+|+++ |+...+++..+.++|..+++.+..++.... +|
T Consensus 117 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~ 190 (467)
T PRK09556 117 SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHV 190 (467)
T ss_pred cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcc
Confidence 012356788999999999999988999999999999765 788888888888999999888776665432 58
Q ss_pred hHHHHHHHHHHHHH
Q 022513 196 WLGFLISSVATLIG 209 (296)
Q Consensus 196 ~~~f~i~~~~~~~~ 209 (296)
+..|.+.+++.++.
T Consensus 191 ~~~f~~~g~~~~~~ 204 (467)
T PRK09556 191 IGMFIFPSIIALII 204 (467)
T ss_pred hhHHHHHHHHHHHH
Confidence 88887766655443
No 64
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.57 E-value=1.2e-13 Score=127.92 Aligned_cols=162 Identities=9% Similarity=0.028 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
.+.+....++..++.......++. +.+++|.+..+.+++.+.+.+...++.+++|+++|| +|||+++.++.++..++.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGC 82 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHH
Confidence 444555666666654444444444 457889999899999999999999999999999999 799999999999888877
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
+.+.... + .++.|++.|++.+...|...+++.|.+|+++ |++..++.....+
T Consensus 83 ~~~~~~~-------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~ 134 (393)
T PRK11195 83 LLMLFGI-------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTI 134 (393)
T ss_pred HHHHHHH-------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHH
Confidence 6654432 1 2678899999999999999999999999643 7888888888889
Q ss_pred HHHHHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513 177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~ 209 (296)
+|..+||.+++++.+. .|+..+.+.+.+.+++
T Consensus 135 ~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 135 AAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999988764 3776666655444333
No 65
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.57 E-value=3.3e-14 Score=139.18 Aligned_cols=193 Identities=13% Similarity=0.168 Sum_probs=144.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
++|.+++.+....+......+......+-++++++++..+.+++.+.+.++..++.++.|+++|| +||||.+.++.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~ 108 (633)
T TIGR00805 30 KIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIM 108 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHH
Confidence 44544444444444444555666666677889999999999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHHHHhhccC----------------CCCCCCCCC------------CcCCcc----hHHHHHHHHHHHHHcCcC
Q 022513 93 VLSLVMLTIQAYSKS----------------LHPPDCGKS------------SCLKGA----IAAYFYGSLYLYSLGCGG 140 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~----------------~~~~~~~~~------------~~~~~~----~~~~~~~~~~l~g~g~g~ 140 (296)
.+|.+++++..++.. .+...|..+ .|.... .+..++++|++.|+|.+.
T Consensus 109 ~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~ 188 (633)
T TIGR00805 109 GLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP 188 (633)
T ss_pred HHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc
Confidence 999998877642110 001123110 122211 356788999999999999
Q ss_pred cccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc----------------------chhHH
Q 022513 141 NRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ----------------------GWWLG 198 (296)
Q Consensus 141 ~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~----------------------gw~~~ 198 (296)
..+...+++.|.+|+++ |+..+++++.+..+|..+|+++++++.+.+ +|+.+
T Consensus 189 ~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~ 262 (633)
T TIGR00805 189 IFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIG 262 (633)
T ss_pred chhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHH
Confidence 99999999999999765 788889999999999999999888765321 27777
Q ss_pred HHHHHHHHHHHHHH
Q 022513 199 FLISSVATLIGLIA 212 (296)
Q Consensus 199 f~i~~~~~~~~~i~ 212 (296)
|.+.+++.++..+.
T Consensus 263 Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 263 FLICGGVALLTSIP 276 (633)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777666554443
No 66
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.57 E-value=1.3e-13 Score=130.17 Aligned_cols=147 Identities=11% Similarity=0.079 Sum_probs=118.0
Q ss_pred HHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcC
Q 022513 40 LYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL 119 (296)
Q Consensus 40 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 119 (296)
..+.+++|.+.++.+++.+.+.++..++.+++|+++|| +|||++++.+.++..++.+++..+.
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~---------------- 105 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS---------------- 105 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence 34567899999999999999888889999999999999 7999999999888888877765543
Q ss_pred CcchHHHHH-HHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHH
Q 022513 120 KGAIAAYFY-GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLG 198 (296)
Q Consensus 120 ~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~ 198 (296)
+...++ ..|++.|++.|...+...+++.|.++ ++ |++..++.+.+.++|..++|.+.+++.+..|||++
T Consensus 106 ---~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~ 175 (455)
T TIGR00892 106 ---NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGS 175 (455)
T ss_pred ---hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHH
Confidence 223444 34688899988766666677788875 22 78888888889999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHH
Q 022513 199 FLISSVATLIGLIAL 213 (296)
Q Consensus 199 f~i~~~~~~~~~i~~ 213 (296)
|++.+++.++..+..
T Consensus 176 f~~~~~~~~~~~v~~ 190 (455)
T TIGR00892 176 FLILGGLLLHCCVCG 190 (455)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998887666554433
No 67
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.56 E-value=6.4e-14 Score=132.09 Aligned_cols=150 Identities=9% Similarity=0.054 Sum_probs=115.8
Q ss_pred hHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 022513 37 SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS 116 (296)
Q Consensus 37 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 116 (296)
...+|+.++ |+++.+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.+.+.+....
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 344577777 9999999999999999999999999999999 799999999998888887766554210
Q ss_pred CcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHH-HHHhhhhhhccccch
Q 022513 117 SCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM-IGVTAIVYVFIDQGW 195 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~~~~~l~~~~gw 195 (296)
..+...+++.|++.|++.|...+.......|++|+++ |++..++++.+.++|+. .+|+....+....+|
T Consensus 117 ----~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw 186 (452)
T PRK11273 117 ----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDW 186 (452)
T ss_pred ----cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccH
Confidence 1235667888999999998888877888889988554 78888888888888864 455443333333489
Q ss_pred hHHHHHHHHHHHHH
Q 022513 196 WLGFLISSVATLIG 209 (296)
Q Consensus 196 ~~~f~i~~~~~~~~ 209 (296)
++.|++.+++.++.
T Consensus 187 ~~~f~i~~~~~~~~ 200 (452)
T PRK11273 187 HAALYMPAFAAILV 200 (452)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998877655443
No 68
>TIGR00898 2A0119 cation transport protein.
Probab=99.56 E-value=2.6e-14 Score=136.33 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=124.9
Q ss_pred HhhhhcCCC---hhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 022513 41 YFKNEMHFD---IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSS 117 (296)
Q Consensus 41 yl~~~l~~s---~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 117 (296)
-+.+++|++ ..+.++..+++.++..++.++.|+++|| +|||+++.++.++..++.++..++.
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~-------------- 178 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSP-------------- 178 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence 356789998 8889999999999999999999999999 7999999999988888877665542
Q ss_pred cCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhH
Q 022513 118 CLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWL 197 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~ 197 (296)
+...+++.|++.|++.++..+....+++|.+|+++ |+...+.+..+..+|..+++.++..+.+ ||+
T Consensus 179 -----~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~ 244 (505)
T TIGR00898 179 -----NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRW 244 (505)
T ss_pred -----cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH
Confidence 45788999999999999999999999999998654 6677777777888888888877665543 999
Q ss_pred HHHHHHHHHHHHHH--HHHhcCCceeecCCC
Q 022513 198 GFLISSVATLIGLI--ALAIGKPFYRIQQPG 226 (296)
Q Consensus 198 ~f~i~~~~~~~~~i--~~~~~~~~~~~~~~~ 226 (296)
.+++.++..++..+ .+.+++|++...+.+
T Consensus 245 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~ 275 (505)
T TIGR00898 245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGR 275 (505)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHCCC
Confidence 88877665444332 334566776654444
No 69
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.56 E-value=4.8e-14 Score=132.36 Aligned_cols=152 Identities=10% Similarity=0.066 Sum_probs=120.3
Q ss_pred HHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 022513 38 MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSS 117 (296)
Q Consensus 38 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 117 (296)
..+++++ +|+++++.+++.+.+.++..++.++.|+++|| +|||+.+.++.++..++.++.......
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~------------ 114 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWA------------ 114 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccc------------
Confidence 3456665 59999999999999999999999999999999 799999999888888877665433110
Q ss_pred cCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh-ccccchh
Q 022513 118 CLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV-FIDQGWW 196 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l-~~~~gw~ 196 (296)
..+...+.+.|++.|++.|...+.....+.|.+|+++ |++.+++++...++|+.+++.+.+.. ....+||
T Consensus 115 ---~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~ 185 (438)
T TIGR00712 115 ---TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWH 185 (438)
T ss_pred ---cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhH
Confidence 1234567788999999999888888899999998765 78899998889999999888776654 3456899
Q ss_pred HHHHHHHHHHHHHHHH
Q 022513 197 LGFLISSVATLIGLIA 212 (296)
Q Consensus 197 ~~f~i~~~~~~~~~i~ 212 (296)
..|++.+++.++..+.
T Consensus 186 ~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 186 AALYFPAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999877766554433
No 70
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.55 E-value=6.2e-14 Score=126.94 Aligned_cols=169 Identities=9% Similarity=0.062 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhH---HHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISM---VLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l---~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ 93 (296)
-+.++...++...++|-+.-+. .+++.++.++|.++.+.+.+.+.+...++-.+.|.++|| .+.|..+.+++++..
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsa 105 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHH
Confidence 3556677888888888887554 478888999999999999999999999999999999999 699999999999988
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
+..+++.++. +...+.+..++.|..+|.-.|++...++..|+.++ ||+..+.++.
T Consensus 106 i~nil~Gfs~-------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~ 160 (448)
T COG2271 106 IVNILFGFSP-------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNT 160 (448)
T ss_pred HHHHHHhhhh-------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehh
Confidence 8888877654 45678888899999999999999999999999766 8999999999
Q ss_pred HHHHHHHHHHhhh--hhhccccchhHHHHHHHHHHHHHHH
Q 022513 174 ATTLAAMIGVTAI--VYVFIDQGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 174 ~~~~G~~i~~~~~--~~l~~~~gw~~~f~i~~~~~~~~~i 211 (296)
+-|+|+.+.|.+. +++..+.+||.+|++++++.++..+
T Consensus 161 shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival 200 (448)
T COG2271 161 SHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVAL 200 (448)
T ss_pred hhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 9999999999998 8888888999999999887655433
No 71
>PRK15075 citrate-proton symporter; Provisional
Probab=99.54 E-value=5.1e-13 Score=125.29 Aligned_cols=175 Identities=15% Similarity=0.054 Sum_probs=120.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHH-HHHHHH-----HHHHHHhHHHHHhhhcCchhHH
Q 022513 11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNT-LTNFFG-----STFLLCLVGGFISDTYLSRFAT 84 (296)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~-~~~~~~-----~~~~~~l~~G~laDr~~GRr~~ 84 (296)
+.+++......+..+++.+....+ ....+.+.++++.+..+.+.. .+.... ...+++++.|+++|| +|||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~ 88 (434)
T PRK15075 11 ESKARAILRVTSGNFLEMFDFFLF-GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKG 88 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHH
Confidence 334555555566666666665444 444556788899877665433 322221 123678899999999 799999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhh
Q 022513 85 CLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKAL 164 (296)
Q Consensus 85 i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r 164 (296)
++.+.+++.++.+++.++.+..... ......++++|++.|++.|...+....+++|.+|+++ |
T Consensus 89 l~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------r 151 (434)
T PRK15075 89 LIVTLSIMASGTLLIAFVPGYATIG-----------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------K 151 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHH-----------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------c
Confidence 9999999998888776653211000 0001246889999999999998988999999999765 7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhh--------ccccchhHHHHHHHH
Q 022513 165 ASYFNFYLFATTLAAMIGVTAIVYV--------FIDQGWWLGFLISSV 204 (296)
Q Consensus 165 ~~~~~~~~~~~~~G~~i~~~~~~~l--------~~~~gw~~~f~i~~~ 204 (296)
++..+++....++|..+++.+++.+ .+..|||+.|++...
T Consensus 152 g~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 152 GFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 7887777766667766666555443 246799999987543
No 72
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.54 E-value=6.3e-13 Score=123.04 Aligned_cols=175 Identities=17% Similarity=0.094 Sum_probs=123.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
+++..+..+...+.....++....+++.|+++++|++..+++.+.+...++..++.+++|+++|| +|||+.+..+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHH
Confidence 44444444444444444445556788999999999999988888777777778889999999999 79999887766554
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.+......... +...+.+.+++.+++.|...+..+.+..|.+|++ +++..+.++
T Consensus 293 ~~~~~~~~~~~-------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-------~g~~~~~~~ 346 (393)
T PRK15011 293 VCFYAGMLMAH-------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-------AGSATTLYT 346 (393)
T ss_pred HHHHHHHHHHh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------cchHHHHHH
Confidence 44433222111 2334555666666666655556667778888742 567778877
Q ss_pred HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022513 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA 214 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 214 (296)
...++|..+++.+++++.+..+|+..|.+.+++.+++++..+
T Consensus 347 ~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 347 NTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999988999999887776666555443
No 73
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.54 E-value=4.1e-13 Score=127.12 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
.++...+..++....+++...++|.|+++++|+|..+++.......++..++.+++|+++|| +|||+.+.....+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHH
Confidence 45556666667777777888899999999999999999998888889999999999999999 79998776654444333
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT 175 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~ 175 (296)
..+..... ..+....++.+++.|++..+..........|.+|++. +++..+..+...
T Consensus 338 ~~~~~~~~-----------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~~g 394 (467)
T PRK09556 338 FTLGVYQH-----------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGTFA 394 (467)
T ss_pred HHHHHHHh-----------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHHHH
Confidence 22222211 0122344456666665433333333456669998654 788888888888
Q ss_pred HH-HHHHHHhhhhhhcc------------ccchhHHHHHHHHHHHHHHHHH
Q 022513 176 TL-AAMIGVTAIVYVFI------------DQGWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 176 ~~-G~~i~~~~~~~l~~------------~~gw~~~f~i~~~~~~~~~i~~ 213 (296)
++ |+.++|.+.|++.+ ..+|+..|.+..++.+++.+..
T Consensus 395 ~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 395 YLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM 445 (467)
T ss_pred HHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence 86 77899999999988 5689999988776666654443
No 74
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.53 E-value=6.8e-13 Score=122.77 Aligned_cols=175 Identities=11% Similarity=-0.035 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
..|......++...++....++++.|+++++|++..+.+++.+...++..++.++.|+++|| +|||+.+..+.+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence 45666667778788877888999999999999999999999999999999999999999999 79999998877666554
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT 175 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~ 175 (296)
..........+... ......+.+++++.+++.+...+....+..|.-++ ++..++......
T Consensus 82 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~~~~ 142 (396)
T TIGR00882 82 FAPFFIYVFGPLLQ-----------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYGKARMFG 142 (396)
T ss_pred HHHHHHHHhhhHHH-----------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccchhhhhc
Confidence 43322111000000 01123455667788888888777777766553221 233445555677
Q ss_pred HHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513 176 TLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 176 ~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i 211 (296)
++|..++|.+++.+.+ .+|+..|++.+++.++..+
T Consensus 143 ~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~ 177 (396)
T TIGR00882 143 CVGWALCASIAGILFS-IDPQIVFWLGSGFALILML 177 (396)
T ss_pred ccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHH
Confidence 8999999999887755 5899999887766555443
No 75
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.52 E-value=9.7e-13 Score=125.09 Aligned_cols=148 Identities=19% Similarity=0.154 Sum_probs=109.9
Q ss_pred HhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 022513 33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD 112 (296)
Q Consensus 33 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~ 112 (296)
+...++|.|+++++|++..+++.+.+...++..++.+++|+++|| +|||+++..+.++..++.++.....
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~--------- 362 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIG--------- 362 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhcc---------
Confidence 456788999988999999999999999999999999999999999 7999998877666555443322211
Q ss_pred CCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc
Q 022513 113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID 192 (296)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~ 192 (296)
........+..++.+....+..+..+.++.|.+|++. |++.+++++...++|+.++|.+.+++.++
T Consensus 363 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 363 --------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred --------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 1122233333333333333345677788889988654 78888888888899999999999999999
Q ss_pred cchhHHHHHHHH
Q 022513 193 QGWWLGFLISSV 204 (296)
Q Consensus 193 ~gw~~~f~i~~~ 204 (296)
.||+..+...+.
T Consensus 429 ~g~~~~~~~~~~ 440 (496)
T PRK03893 429 LDLGTALASLSF 440 (496)
T ss_pred CChHHHHHHHHH
Confidence 898877755443
No 76
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.52 E-value=2.7e-13 Score=122.81 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=136.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC-chhHHHHHH-HHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-SRFATCLVF-GTLE 92 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-GRr~~i~~~-~~~~ 92 (296)
|.+|.+.+..++....-|++..+.|.|+.+..|+|..++.+..+.+..++..|++++||++||.+ |||..+-+. .+..
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 66888888999999999999999999999999999999999999999999999999999999988 887755443 3333
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.++.+....+. +.+..+..+..+.+|+..-+.+-.+.....|..|.+. .|+..+...
T Consensus 332 ~~~~~~~w~~~-----------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~G 388 (448)
T COG2271 332 TASLVLYWLAP-----------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVG 388 (448)
T ss_pred HHHHHHHHcCC-----------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhh
Confidence 33333333221 2345666677777888776666666666778888654 567767766
Q ss_pred HHHHH-HHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513 173 FATTL-AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 173 ~~~~~-G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
++..+ |...+....+++.|.+||...|.+..+..+++.+++.+
T Consensus 389 lf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 389 LFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred hHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 67777 88888888899988899999988776666555554444
No 77
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.51 E-value=1.7e-12 Score=120.15 Aligned_cols=174 Identities=15% Similarity=0.148 Sum_probs=118.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhHHHHHhhhcCchhHHHH-HHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTYLSRFATCL-VFGTLE 92 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~~GRr~~i~-~~~~~~ 92 (296)
+..+..+...++.+++.....+.++.|+++++|.|.++.+++.+.... +..++++.+++ +|| +||||.++ .+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~ 92 (393)
T PRK15011 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLG 92 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHH
Confidence 345556667888888888888999999999999999999998776544 55566666777 999 69998755 444444
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHH-HHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFY-GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
.++..+...+. +...++ +++++.+++ +...+...++..|..+++. | ..+...+..
T Consensus 93 ~~~~~~~~~~~-------------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~ 148 (393)
T PRK15011 93 VLACTLFAWNR-------------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTG---R-EAVMFSSFL 148 (393)
T ss_pred HHHHHHHHHhh-------------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc---c-hHHHHHHHH
Confidence 45544444332 233443 344444444 3455666676777554322 1 123334566
Q ss_pred HHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022513 172 LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA 214 (296)
Q Consensus 172 ~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 214 (296)
+.+.++|..++|.+++++.++.|||..|++.++..++..+..+
T Consensus 149 ~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 149 RAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999998889999999888766555444433
No 78
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.51 E-value=1.5e-12 Score=122.10 Aligned_cols=149 Identities=12% Similarity=-0.040 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ 93 (296)
|.++. ....+...+....+...+...+.+ ++|+|.++.+++.++..++..++.++.|++.|| +|.|+++.++.++..
T Consensus 34 r~l~~-s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWI-SVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHH
Confidence 44433 333444445444444555555544 899999999999999999999999999999999 799999999999988
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
+.++...++.. . ...++..+++.|++.|++ |...+.....++++||+++ |++..+++..
T Consensus 112 i~~~~~~~a~~--~------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g 170 (462)
T PRK15034 112 IPCVWLGIAVQ--N------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGG 170 (462)
T ss_pred HHHHHHHHHHc--c------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHH
Confidence 88777665411 0 012567899999999998 6677888899999999654 7788887755
Q ss_pred HHHHHHHHHHhhh
Q 022513 174 ATTLAAMIGVTAI 186 (296)
Q Consensus 174 ~~~~G~~i~~~~~ 186 (296)
..++|..+++.+.
T Consensus 171 ~G~~G~~l~~~l~ 183 (462)
T PRK15034 171 LGNLGVSVMQLVA 183 (462)
T ss_pred HHhhHHHHHHHHH
Confidence 5566665544433
No 79
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.51 E-value=7.7e-16 Score=144.64 Aligned_cols=162 Identities=14% Similarity=0.175 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHH
Q 022513 52 GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSL 131 (296)
Q Consensus 52 ~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (296)
..++..+...++..+|.+++|+++|| +|||+++.++.++..+|.++...+.. ..+...+.++|
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~----------------~~~~~~~~~~R 109 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPS----------------YNNFWMLLIGR 109 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccccc----------------ccccccccccc
Confidence 45678888999999999999999999 79999999999999999887766531 01356789999
Q ss_pred HHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc---cccchhHHHHHHHHHHH-
Q 022513 132 YLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF---IDQGWWLGFLISSVATL- 207 (296)
Q Consensus 132 ~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~---~~~gw~~~f~i~~~~~~- 207 (296)
++.|++.|+..+..+.++.|..|++. |+....+.+....+|..++..+...+. +..+||..+.+..+..+
T Consensus 110 ~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~ 183 (451)
T PF00083_consen 110 FLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLL 183 (451)
T ss_pred cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999998765 777777777788888887765543332 23459988877665442
Q ss_pred -HHHHHHHhcCCceeecCCCCChhhhhhhh
Q 022513 208 -IGLIALAIGKPFYRIQQPGESPLVRVAQV 236 (296)
Q Consensus 208 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~v 236 (296)
+....+++++|+|...+.+.++.++..+.
T Consensus 184 ~~~~~~~~pESP~wL~~~~~~~~A~~~l~~ 213 (451)
T PF00083_consen 184 VLLLRFFLPESPRWLLSKGRDEEAEKVLRK 213 (451)
T ss_pred ccccccccccccceeccccccccccccccc
Confidence 23445678999999887765444443333
No 80
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.51 E-value=3.4e-13 Score=125.64 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHH
Q 022513 20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML 99 (296)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~ 99 (296)
++...++..++.......++.+. ++++.+..+.+++.+...++..++.++.|+++|| +|||+++..+.++..++.+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~ 99 (417)
T PRK10489 22 VFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGL 99 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHH
Confidence 33445555555444444555554 5677899999999999999999999999999999 799999988877777666554
Q ss_pred HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 022513 100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA 179 (296)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 179 (296)
....... ..+...+++.+++.|++.+...++..+++.|.+|+++ |++..+..+...++|.
T Consensus 100 ~~~~~~~--------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~ 159 (417)
T PRK10489 100 ALNAFLP--------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGS 159 (417)
T ss_pred HHHHHcC--------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHH
Confidence 4321111 1235677788999999888777888888888887543 6777788888899999
Q ss_pred HHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 180 MIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 180 ~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
.+||.+++++.+..+|++.|.+.++..++..+.
T Consensus 160 ~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T PRK10489 160 VISPALGGLLIAAGGVAWNYGLAAAGTFITLLP 192 (417)
T ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999888888999988776665554433
No 81
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.51 E-value=7.9e-13 Score=120.07 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
.+......++..........+.+.|. +++|.+..+.+.......++..++.++.|+++|| +|||+.+.++.++..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHH
Confidence 33333344444444444555566665 5688888888888888999999999999999999 799999998888887776
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
+++..... .....++...++.+++.|...+..+.+.+|.+|+++ |++.+++++...+
T Consensus 285 ~~~~~~~~-----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~ 341 (377)
T TIGR00890 285 AAMLFIPM-----------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKA 341 (377)
T ss_pred HHHHHccc-----------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHH
Confidence 65543321 112234455667788888877888889999998655 7888899888999
Q ss_pred HHHHHHHhhhhhhccccchhHHHHHHHHHHHHHH
Q 022513 177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL 210 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~ 210 (296)
+|..++|.+.+++.++.||+..|.+.+++.+++.
T Consensus 342 ~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 342 VAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999988999999988777665543
No 82
>PRK09952 shikimate transporter; Provisional
Probab=99.50 E-value=1.8e-12 Score=121.76 Aligned_cols=180 Identities=11% Similarity=-0.034 Sum_probs=124.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
+++.........++..+.+|....+++.|+++++|++......+.....+...++.++.|+++|| +|||+++..+.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~ 326 (438)
T PRK09952 248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIG 326 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHH
Confidence 34444444445666777888888999999999999988765555555666677888999999999 79999988877665
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.++.+.+..... . ......+++..++.+++.+...+..+++.+|.+|.+. |++..++.+
T Consensus 327 ~~~~~~~~~~~~-~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~ 385 (438)
T PRK09952 327 TLSAFPFFMALE-A--------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGY 385 (438)
T ss_pred HHHHHHHHHHHH-c--------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHH
Confidence 554433322210 0 1122333445556677777777888899999999754 667777644
Q ss_pred -HHHHHHHHHHHhhhhhhcccc--chhHHHHHHHHHHHHHHHHHH
Q 022513 173 -FATTLAAMIGVTAIVYVFIDQ--GWWLGFLISSVATLIGLIALA 214 (296)
Q Consensus 173 -~~~~~G~~i~~~~~~~l~~~~--gw~~~f~i~~~~~~~~~i~~~ 214 (296)
.+..+|+.++|.+.+++.+.. +|...+.+.+++.+++.+..+
T Consensus 386 ~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~ 430 (438)
T PRK09952 386 QVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL 430 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 445689999999999987643 477777766666665554433
No 83
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.50 E-value=1.1e-12 Score=122.25 Aligned_cols=180 Identities=10% Similarity=-0.068 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
+..+.+....++...++....++++.|+++++|+|..+.+.+.+.+.++..+++++.|+++|| +|||+++.++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 456666667777777777788999999999999999999999999999999999999999999 7999999887665554
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 174 (296)
+..........+.. . .....+..+.++..+...........+..++. .+.++..++..+..
T Consensus 89 ~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~ 149 (420)
T PRK09528 89 LFGPFFIYVFAPLL--------------Q-YNILLGAIVGGIYLGFGFLAGAGAIEAYIERV----SRRSGFEYGRARMW 149 (420)
T ss_pred HHHHHHHHHHHHHH--------------H-HHHHHHHHHHHHHhhhhhccchhhhhhHHHHH----HhhccccchhhHHh
Confidence 43322211100000 0 00112222223222222222222222222111 11245555666667
Q ss_pred HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513 175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
.++|..++|.+++++.+ .+|+..|++.++..++..+..+.
T Consensus 150 ~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 150 GSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred hhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence 88999999999888865 47999998877666555444433
No 84
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.49 E-value=1.4e-12 Score=121.21 Aligned_cols=148 Identities=11% Similarity=0.033 Sum_probs=124.1
Q ss_pred HhHHHHhhhhcCCChhh-HHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 022513 36 ISMVLYFKNEMHFDIAG-ASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG 114 (296)
Q Consensus 36 ~~l~~yl~~~l~~s~~~-a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~ 114 (296)
++...|+.+++|++.++ .+.+.+++..+..++.+++|+++|| +|.|+++.++.+...+..+++.++.
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~----------- 113 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT----------- 113 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 45567899999999999 9999999999999999999999999 7999999999999988888777653
Q ss_pred CCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc
Q 022513 115 KSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG 194 (296)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~g 194 (296)
+...+.+.|++.|++.|+.. +...++...+|+++ |++..+....+..+|.++++.+++++ ..+|
T Consensus 114 --------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll-~s~g 177 (511)
T TIGR00806 114 --------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL-VTLG 177 (511)
T ss_pred --------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Confidence 35679999999999999998 99999999999554 78888899999999999999999884 4678
Q ss_pred hhHHHH---HHHHHHHHHHH
Q 022513 195 WWLGFL---ISSVATLIGLI 211 (296)
Q Consensus 195 w~~~f~---i~~~~~~~~~i 211 (296)
|+.-+. +......++++
T Consensus 178 Wr~y~~Ln~Isl~s~~~a~~ 197 (511)
T TIGR00806 178 WISYSTLNIISLVFMTFSVF 197 (511)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 885443 33344444433
No 85
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.49 E-value=4.4e-13 Score=122.10 Aligned_cols=146 Identities=12% Similarity=0.087 Sum_probs=116.2
Q ss_pred HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513 36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK 115 (296)
Q Consensus 36 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 115 (296)
..+.+.+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+.. ...
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~------------ 85 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAP------------ 85 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hhc------------
Confidence 344455778999999999999999999999999999999999 799999999888877776554 221
Q ss_pred CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc--
Q 022513 116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ-- 193 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~-- 193 (296)
+...+++.|++.|+|.+...+..+....|.+++ + |++..+.++...++|..+++.+.+.+.+..
T Consensus 86 -------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~ 151 (355)
T TIGR00896 86 -------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPLAQHSGG 151 (355)
T ss_pred -------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345678899999999988778888888887763 2 678888888888999999998888776654
Q ss_pred chhHHHHHHHHHHHHH
Q 022513 194 GWWLGFLISSVATLIG 209 (296)
Q Consensus 194 gw~~~f~i~~~~~~~~ 209 (296)
+||..|.+.++..++.
T Consensus 152 ~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 152 HWQQALAWWALPALLA 167 (355)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3888887665544333
No 86
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.48 E-value=2.7e-12 Score=115.25 Aligned_cols=172 Identities=21% Similarity=0.213 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhH-HHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-TCLVFGTLEVL 94 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~-~i~~~~~~~~i 94 (296)
..+......++..........+.+.|+++.+|.+..+.+.......++..++.++.|+++|| +|||+ .+..+..+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i 254 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAAL 254 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Confidence 34455556666677777778888999988889999999999999999999999999999999 79999 89888888888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 174 (296)
+.+...... +....++..++.+++.+...+....+..|..|+++ |++.++.++..
T Consensus 255 ~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 309 (352)
T cd06174 255 GLLLLALAP-------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNTF 309 (352)
T ss_pred HHHHHHHhc-------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHHH
Confidence 776665432 24567778889999999999999999999998644 78899999999
Q ss_pred HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513 175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 213 (296)
.++|..+++.+.+++.+..+|+..+.+.+++.+++.+..
T Consensus 310 ~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 310 GSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999988899999998888776665543
No 87
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.48 E-value=3.8e-13 Score=129.03 Aligned_cols=163 Identities=14% Similarity=0.055 Sum_probs=130.0
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcch
Q 022513 44 NEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI 123 (296)
Q Consensus 44 ~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (296)
+..+.+.....+..+++.++..+|+++.|+++|| +|||++++.+.++.+++.++.+++. +
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~-------------------~ 170 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP-------------------N 170 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC-------------------c
Confidence 4566677788888999999999999999999999 8999999999999999887766653 5
Q ss_pred HHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHH
Q 022513 124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISS 203 (296)
Q Consensus 124 ~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~ 203 (296)
+..+++.|++.|++.++...+...+++|.++++. |+...++ ......++.+++.+++++.. +||+.+++..
T Consensus 171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~ 241 (521)
T KOG0255|consen 171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIIS 241 (521)
T ss_pred HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 6789999999999999999999999999999776 6677666 55666777777778888776 7999988876
Q ss_pred HHHHHHHH-HHHh-cCCceeecCCCCChhhhhhh
Q 022513 204 VATLIGLI-ALAI-GKPFYRIQQPGESPLVRVAQ 235 (296)
Q Consensus 204 ~~~~~~~i-~~~~-~~~~~~~~~~~~~~~~~~~~ 235 (296)
+..++.++ .++. ++|||+..+.+.+...+..+
T Consensus 242 ~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~ 275 (521)
T KOG0255|consen 242 IPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILK 275 (521)
T ss_pred HHHHHHHHHHHccCcChHHHHHcCchHHHHHHHH
Confidence 65544433 3444 89999988776533333333
No 88
>PRK03699 putative transporter; Provisional
Probab=99.47 E-value=2.3e-12 Score=119.20 Aligned_cols=169 Identities=13% Similarity=0.117 Sum_probs=124.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
+.++......++...+.+++..++|.|+++++|+|..+++...+.+.++..++.+++|+++|| +|||+.+.....+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 344555555566666777888999999999999999999999999889999999999999999 7999988876666555
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 174 (296)
+..++.... +...+.+..++.|++.++..+...++..|..|.+. +...+..+..
T Consensus 284 ~~~~~~~~~-------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~ 337 (394)
T PRK03699 284 LMYLFVNTD-------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVAS-------PKLVNFILTC 337 (394)
T ss_pred HHHHHHHcC-------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-------HHHHHHHHHh
Confidence 443332211 12334455667777777677777777777766432 3345566667
Q ss_pred HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHH
Q 022513 175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL 210 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~ 210 (296)
.++|..++|.+.+++.+..|++..+++.+++.+++.
T Consensus 338 ~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (394)
T PRK03699 338 GTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF 373 (394)
T ss_pred hhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH
Confidence 889999999999999988899988887666555443
No 89
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.45 E-value=2.4e-12 Score=127.36 Aligned_cols=129 Identities=16% Similarity=0.052 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHH
Q 022513 57 LTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSL 136 (296)
Q Consensus 57 ~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 136 (296)
..+..++..++.+++|+++|| +|||+++.++.++..++.+++.... +...+++.+++.++
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~-------------------s~~~ll~~~~l~g~ 660 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN-------------------SESAMIALLCLFGG 660 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc-------------------cHHHHHHHHHHHHH
Confidence 344557778899999999999 7999999988888877766655432 12345556667777
Q ss_pred cCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 137 GCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 137 g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
+.++..+...++++|.+|++. |++.+++.+....+|++++|.+++++.+. +...+|.+.+++.+++.++
T Consensus 661 ~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll 729 (742)
T TIGR01299 661 LSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLL 729 (742)
T ss_pred HHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence 777778888999999999654 89999999999999999999998877653 3456777766665554443
No 90
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.45 E-value=3.4e-12 Score=133.04 Aligned_cols=154 Identities=12% Similarity=0.084 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChh--hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIA--GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~--~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ 93 (296)
.....+...++.+++..+....+..++...++.+.. ..+++.+++.++..++.+++|+++|| +|||++++++.++.+
T Consensus 10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~ 88 (1146)
T PRK08633 10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEV 88 (1146)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHH
Confidence 344444555555555545555555566666666543 35777888899999999999999999 799999999887776
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
++.++..++.. ..+...+++.|++.|++.+...+...++++|.+|+++ |+..++++..
T Consensus 89 ~~~~~~~~~~~----------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~ 146 (1146)
T PRK08633 89 GLTLLIVLAYY----------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEA 146 (1146)
T ss_pred HHHHHHHHHHH----------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHH
Confidence 66655544321 1235788999999999999999999999999999765 7888999999
Q ss_pred HHHHHHHHHHhhhhhhccc
Q 022513 174 ATTLAAMIGVTAIVYVFID 192 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~ 192 (296)
+.++|..+|+.+++++...
T Consensus 147 ~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 147 FTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888654
No 91
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.45 E-value=4.9e-12 Score=115.46 Aligned_cols=163 Identities=13% Similarity=0.012 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHh
Q 022513 24 SALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQA 103 (296)
Q Consensus 24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~ 103 (296)
.++..........+++.|+++++|.+..+.+.......+...++.+++|+++|| +|||+++.++.++..+.........
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T TIGR00899 208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAADN 286 (375)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHH
Confidence 333333334455677889989999999988888777777777788999999999 7999998877665544433322221
Q ss_pred hccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 022513 104 YSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV 183 (296)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 183 (296)
+...+++.+++.+++.|...+....+..|..|++ +++..+.++...++|..++|
T Consensus 287 -------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~g~ 340 (375)
T TIGR00899 287 -------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGWIIAG 340 (375)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHHHHHH
Confidence 2344556677778887777777778888887642 45777888888899999999
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513 184 TAIVYVFIDQGWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 184 ~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 213 (296)
.+.+++.+..||+..|.+.+++.+++.+..
T Consensus 341 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 341 SVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 999999888899999988887766665543
No 92
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.45 E-value=5.6e-12 Score=114.29 Aligned_cols=185 Identities=13% Similarity=-0.007 Sum_probs=145.4
Q ss_pred CcccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH
Q 022513 8 IKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV 87 (296)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~ 87 (296)
..|+.++|.++. ....+...+....+...+..++.+++|+|+.|.++++.+-.+...+..++-|.+.|| +|.|++..+
T Consensus 7 ~~k~~~~~~L~~-S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~ 84 (417)
T COG2223 7 RGKRIARRNLWL-STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTIL 84 (417)
T ss_pred ccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHH
Confidence 345667777664 444555566666777788888999999999999999999999999999999999999 799999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513 88 FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY 167 (296)
Q Consensus 88 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~ 167 (296)
+.++.++-.+....+...+ +.+.+++...+.|++.|.+ +...+++++.||+++ .|..
T Consensus 85 s~~l~~IP~~~~~~a~~~~----------------~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~A 141 (417)
T COG2223 85 SMLLLLIPCLGLAFAVTYP----------------STWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLA 141 (417)
T ss_pred HHHHHHHHHHHHHHHccCC----------------chHHHHHHHHHHhccccee-hcccccccccCChhh------hhHH
Confidence 9988888777777765322 3367888888888886654 555677899999765 6788
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccc---hhHHHHHHHHHHHHHHHHHHhcCC
Q 022513 168 FNFYLFATTLAAMIGVTAIVYVFIDQG---WWLGFLISSVATLIGLIALAIGKP 218 (296)
Q Consensus 168 ~~~~~~~~~~G~~i~~~~~~~l~~~~g---w~~~f~i~~~~~~~~~i~~~~~~~ 218 (296)
.+++. ..|+|..+...+...+....+ |+.+..+..+.+++..+.++...+
T Consensus 142 lGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 142 LGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88877 889999998888888887777 888887777777776666555443
No 93
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.44 E-value=5.3e-12 Score=116.74 Aligned_cols=161 Identities=20% Similarity=0.155 Sum_probs=120.3
Q ss_pred HHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 022513 26 LENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYS 105 (296)
Q Consensus 26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~ 105 (296)
+..+++.....+++.|+.+ .|.+ +.+.....+.++..++.++.|++.|| +|||+.+..+..+..++.+++....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~-- 300 (399)
T PRK05122 227 LASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAP-- 300 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3445555666778888764 4553 34555667777888899999999999 7999998888777777765544321
Q ss_pred cCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhh
Q 022513 106 KSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTA 185 (296)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~ 185 (296)
+...+++.+++.|++.+...+.......|.+|+++ |++..++++...++|..+++.+
T Consensus 301 -----------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~~ 357 (399)
T PRK05122 301 -----------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITGPL 357 (399)
T ss_pred -----------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 23456677888999888777777777778777543 7888899888999999999989
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513 186 IVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 186 ~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
.+++.+..||+..|.+.+++.+++++....
T Consensus 358 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 358 AGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999988889999998887776666555443
No 94
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.44 E-value=3.1e-12 Score=119.57 Aligned_cols=176 Identities=12% Similarity=-0.000 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHhhhhcCCC--------hhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513 20 VFVLSALENMGFIANGISMVLYFKNEMHFD--------IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL 91 (296)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s--------~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~ 91 (296)
.+...++..........+++.|+++ .|.+ ....+...++..+...++.++.|+++|| +|||+++.++.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~ 290 (418)
T TIGR00889 213 FFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVA 290 (418)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 3444444444444455667777754 4433 3456777888888888999999999999 7999999999988
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
..++..++..... .......+++..++.|++.+...+....+++|.+|++. |++.++++
T Consensus 291 ~~v~~~l~~~~~~---------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~ 349 (418)
T TIGR00889 291 WALRFGFFAYGDP---------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLF 349 (418)
T ss_pred HHHHHHHHHHcCc---------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHH
Confidence 8777655544210 01123456677888999888888888899999998554 78899988
Q ss_pred H-HHHHHHHHHHHhhhhhhccc------cchhHHHHHHHHHHHHHHHHHHhcCC
Q 022513 172 L-FATTLAAMIGVTAIVYVFID------QGWWLGFLISSVATLIGLIALAIGKP 218 (296)
Q Consensus 172 ~-~~~~~G~~i~~~~~~~l~~~------~gw~~~f~i~~~~~~~~~i~~~~~~~ 218 (296)
+ ....+|..+||.+.+++.++ .||+..|.+.+++.++..+++....+
T Consensus 350 ~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 350 TLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7 56789999999999998876 46999998877766555554444333
No 95
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.44 E-value=2.5e-12 Score=117.45 Aligned_cols=169 Identities=14% Similarity=0.090 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
..+......++....++....+++.|+++++|.+..+.+.......++..++.+++|+++|| +|||+.+..+..+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~ 298 (394)
T TIGR00883 220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALL 298 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHH
Confidence 35555666677777778888899999999999999999888888888999999999999999 79999877655544333
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH-HHH
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY-LFA 174 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~-~~~ 174 (296)
.+....... . ..+...++....+.+++.+...+...+++.|.+|++. |++..+.. ..+
T Consensus 299 ~~~~~~~~~-~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~ 357 (394)
T TIGR00883 299 AVPLLMALL-D--------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYNLA 357 (394)
T ss_pred HHHHHHHHh-c--------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhHhH
Confidence 211111110 0 1123445566677888888888889999999999765 56666653 455
Q ss_pred HHHHHHHHHhhhhhhccccc-hhHHHHHHHHHH
Q 022513 175 TTLAAMIGVTAIVYVFIDQG-WWLGFLISSVAT 206 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~ 206 (296)
..+|..++|.+.+++.++.| |+..++...++.
T Consensus 358 ~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 358 GAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 67888899999999988877 776665554433
No 96
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.44 E-value=1e-11 Score=115.00 Aligned_cols=177 Identities=10% Similarity=-0.030 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
..+.+....++...+++++..+++.|+++ +|.+..+++...+.+.++..++.++.|+++|| +|||+.+.++..+..++
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVG 283 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHH
Confidence 34445555556677888888999999976 79999999999999999999999999999999 79999988887777666
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT 175 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~ 175 (296)
...+.... . +.... ...+.|++.+...+.......|.+++++ .+++.+++.+...
T Consensus 284 ~~~~~~~~-----------------~-~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g~~~~~~ 338 (393)
T PRK09705 284 FCGFIWLP-----------------L-QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVAFMQGIG 338 (393)
T ss_pred HHHHHHcc-----------------c-hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHH
Confidence 55443211 0 11112 1235677777777776666677775321 2688888888889
Q ss_pred HHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513 176 TLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIGKPF 219 (296)
Q Consensus 176 ~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~~~~~ 219 (296)
++++.++|.+.+++.+..| |...|.+.+++.++..+......|+
T Consensus 339 ~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 339 FIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999998875 7788887776666555554444444
No 97
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.43 E-value=5.2e-12 Score=116.20 Aligned_cols=156 Identities=15% Similarity=0.066 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 022513 21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLT 100 (296)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~ 100 (296)
.....+......+...+++.|+.+++|++..+.+.+.....++..++.++.|+++|| +|||+.+.++.++..+..+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~ 322 (405)
T TIGR00891 244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVF 322 (405)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHH
Confidence 333344455555677788999999999999999999999999999999999999999 7999998887765433222211
Q ss_pred HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 022513 101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM 180 (296)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 180 (296)
... .+...+.++.++.++..++..+..++++.|.+|++. |++.++..+...++|+.
T Consensus 323 ~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~ 378 (405)
T TIGR00891 323 AIG------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLGGA 378 (405)
T ss_pred HhC------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHHHH
Confidence 110 122345555566666666677788889999998765 78888998888999999
Q ss_pred HHHhhhhhhccccc-hhHHHHH
Q 022513 181 IGVTAIVYVFIDQG-WWLGFLI 201 (296)
Q Consensus 181 i~~~~~~~l~~~~g-w~~~f~i 201 (296)
++|.+.+++.++.| |+..+..
T Consensus 379 ~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 379 LAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHhccccchhHHh
Confidence 99999999999887 7665543
No 98
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=7.6e-13 Score=118.85 Aligned_cols=150 Identities=13% Similarity=0.027 Sum_probs=130.7
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchH
Q 022513 45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIA 124 (296)
Q Consensus 45 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (296)
..+-++++.+++.....+...+..++.|.+.|| +|+|-.+++|.+++...++++++.. ++
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~-------------------sy 159 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN-------------------SY 159 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc-------------------hh
Confidence 455667788999999999999999999999999 8999999999999999999988764 45
Q ss_pred HHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHH
Q 022513 125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSV 204 (296)
Q Consensus 125 ~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~ 204 (296)
++++++|.++|+|.+....+..++++|.||+++ | |++.++..-....+|-.+||.+++.+.+..|.+.+|++.++
T Consensus 160 ~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~--e---r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~ 234 (464)
T KOG3764|consen 160 PMLFVARSLQGVGSAFADTSGLAMLADVFPEDN--E---RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAI 234 (464)
T ss_pred HHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch--h---hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHH
Confidence 789999999999999999999999999999776 2 67888887778999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCc
Q 022513 205 ATLIGLIALAIGKPF 219 (296)
Q Consensus 205 ~~~~~~i~~~~~~~~ 219 (296)
++++...+.+...+.
T Consensus 235 v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 235 VLLLDGALQLLVIEP 249 (464)
T ss_pred HHHHHHHHHHheeCc
Confidence 887766655544433
No 99
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.41 E-value=2.9e-12 Score=120.66 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=128.3
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchH
Q 022513 45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIA 124 (296)
Q Consensus 45 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (296)
++++++.+.+++.+.+..+..++++.+|+++|| +|-|+++..+.++..+++++...+... +.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~~-----------------~~ 128 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAASI-----------------GF 128 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHh-----------------cc
Confidence 588899999999999999999999999999999 699999999999999999888877532 22
Q ss_pred HHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc-cchhHHHHHHH
Q 022513 125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID-QGWWLGFLISS 203 (296)
Q Consensus 125 ~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-~gw~~~f~i~~ 203 (296)
..+++.|+++|++.|...|++..+.+.+.|+++ |+++.+..+.+..+|..++..+++++.+. .||+..|++.+
T Consensus 129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g 202 (466)
T KOG2532|consen 129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG 202 (466)
T ss_pred hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence 367899999999999999999999999999765 78888888888889999998889999887 99999999988
Q ss_pred HHHHHHHHHHHh
Q 022513 204 VATLIGLIALAI 215 (296)
Q Consensus 204 ~~~~~~~i~~~~ 215 (296)
++.++..++++.
T Consensus 203 ~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 203 IVGLIWFILWFL 214 (466)
T ss_pred HHHHHHHHHHHH
Confidence 877666555443
No 100
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.41 E-value=8.7e-12 Score=117.00 Aligned_cols=174 Identities=19% Similarity=0.103 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC--c-hhHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL--S-RFATCLVFGTLEV 93 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~--G-Rr~~i~~~~~~~~ 93 (296)
++.+....++....++++..+++.|+++++|++..+++...+.+.++..++.+++|+++|| + + |++......+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHHH
Confidence 4444444555556666777899999988899999999999999999999999999999999 6 2 2332222111111
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
+..+.+... +. .+........+..|++..+.........+|.+|++. |++..++.+.
T Consensus 324 ~~~~~~~~~---~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~ 380 (434)
T PRK11663 324 LSVGSLWLM---PF--------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVGL 380 (434)
T ss_pred HHHHHHHHc---cc--------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHHH
Confidence 111111111 10 011222222333343322222223455678877543 7899999999
Q ss_pred HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022513 174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALA 214 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 214 (296)
..++|+.++|.+.+++.+..||+..|.+.+++.+++.+..+
T Consensus 381 ~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 381 FAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999989999999888777666554443
No 101
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.41 E-value=6.6e-12 Score=118.39 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC--chhHHH-HHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL--SRFATC-LVFGTLE 92 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~--GRr~~i-~~~~~~~ 92 (296)
..+...+..++.....++...++|.|++++.|++..+++....++.++..++.+++|+++|| + |||+.. .....+.
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLV 332 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHH
Confidence 35555556666667778888999999999999998888888888888888999999999999 6 555432 2222333
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.++.+.+.... ..+.....+..++.|.+..........+..|.+|++. |++.+++.+
T Consensus 333 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~ 389 (452)
T PRK11273 333 TIATIVYWLNP-----------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTG 389 (452)
T ss_pred HHHHHHHHHhc-----------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHHH
Confidence 33332222111 0112223334444444332222233455678888654 788888888
Q ss_pred HHHHHHHHH-HHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 173 FATTLAAMI-GVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 173 ~~~~~G~~i-~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
...++|+.+ +|.+.+++.++.||+..|.+.+++.+++.+.
T Consensus 390 ~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~ 430 (452)
T PRK11273 390 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 430 (452)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 778888655 7999999999999999998877766555443
No 102
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.40 E-value=1.4e-11 Score=113.97 Aligned_cols=165 Identities=10% Similarity=-0.009 Sum_probs=119.8
Q ss_pred HHHHHHHHHhHHhHHHHhhhhcCCChh---hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 022513 25 ALENMGFIANGISMVLYFKNEMHFDIA---GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTI 101 (296)
Q Consensus 25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~---~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~ 101 (296)
+............++.|+.+..+.... ..+.+..+..++..++.+..|+++|| +|||+++..+..+..++.+.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHH
Confidence 333444445556777787765443222 23444455566777888899999999 79999998888777666554433
Q ss_pred HhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 022513 102 QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI 181 (296)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 181 (296)
.. +...+++.+++.|++.+...+...+++.+..|++. +++.++.++...++|..+
T Consensus 308 ~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~~ 362 (408)
T PRK09874 308 VQ-------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGNVT 362 (408)
T ss_pred hc-------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHHHh
Confidence 21 23456677888899998888888888877776544 688888888889999999
Q ss_pred HHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513 182 GVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 182 ~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
+|.+++++.++.||+..|.+.+++.+++.+..+.
T Consensus 363 gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 363 GPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred hHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999899999999888777766555433
No 103
>PRK03545 putative arabinose transporter; Provisional
Probab=99.40 E-value=3.3e-11 Score=111.31 Aligned_cols=169 Identities=8% Similarity=-0.048 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHH
Q 022513 20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML 99 (296)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~ 99 (296)
.....++.....++...+++.|+++.+|.+..+++.+.....++..++.++.|+++|| +|||+.+ .+..+..++...+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~~~~l 287 (390)
T PRK03545 210 LYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVCLLLL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHHHHHH
Confidence 3344445555556666788888888899999999998888889999999999999999 7987654 4444433333222
Q ss_pred HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 022513 100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA 179 (296)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 179 (296)
.... .+...+++..++.|++.+...+...+.+.|..|+ . +++..+.+....++|.
T Consensus 288 ~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~~~~~g~ 342 (390)
T PRK03545 288 LPAA------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A------TDVAMALFSGIFNIGI 342 (390)
T ss_pred HHHh------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c------HHHHHHHHHHHHHHHH
Confidence 2111 1234556667778888776666667777776653 2 5677788777889999
Q ss_pred HHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513 180 MIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 180 ~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
.+||.+.+++.++.|++..|.+.+++.+++++....
T Consensus 343 ~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 343 GAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877776665543
No 104
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.39 E-value=2.7e-11 Score=112.41 Aligned_cols=174 Identities=12% Similarity=0.056 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHH-HHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL-VFGTLEVL 94 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~-~~~~~~~i 94 (296)
..+......++....+++...++|.|++ ++|++..+.+.+.....++..++.++.|+++|| +|||+.+. .+.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGI 300 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHH
Confidence 3455555667777888888899999885 589999998888888888999999999999999 79988764 23333333
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 174 (296)
+.+.+....... ..+....++..++.|++.+...+ ..+...|..|+ + |++.+++++..
T Consensus 301 ~~~~l~~~~~~~--------------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-~------~g~~~g~~~~~ 358 (402)
T TIGR00897 301 FTLALYYIPQHF--------------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAPK-H------KGAAMSVLNLS 358 (402)
T ss_pred HHHHHHHHHHcc--------------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcc-h------hHHHHHHHHHH
Confidence 322222211000 11234455566677777665543 34555665442 2 78999999999
Q ss_pred HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513 175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 213 (296)
.++|+.++|.+.+++.+..||...+++.+++.+++.++.
T Consensus 359 ~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 359 AGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998899999888877766654443
No 105
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.39 E-value=5.2e-12 Score=119.32 Aligned_cols=173 Identities=15% Similarity=0.040 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc-CchhHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY-LSRFATCLVFGTLEVLS 95 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~-~GRr~~i~~~~~~~~ig 95 (296)
.+..+...++..+++++...+++.|+++ +|++..+++...++..++..++.+++|+++||+ +++++...++......+
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 321 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG 321 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence 4444555566666777777888999865 799999999999999899999999999999983 23344343333222222
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT 175 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~ 175 (296)
...+.... ..+...+++.+++.|++.+...++..+++.|.+|+++ +++.+++++...
T Consensus 322 l~~ll~~~-----------------~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 378 (455)
T TIGR00892 322 LTHLLCAL-----------------AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTIVE 378 (455)
T ss_pred HHHHHHHH-----------------hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHHHH
Confidence 22111111 1134566778889999999888888999999988654 788889999999
Q ss_pred HHHHHHHHhhhhhhcccc-chhHHHHHHHHHHHHHHHHH
Q 022513 176 TLAAMIGVTAIVYVFIDQ-GWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 176 ~~G~~i~~~~~~~l~~~~-gw~~~f~i~~~~~~~~~i~~ 213 (296)
++|..++|.+.+++.+.. +|+..|++.+++.+++.+..
T Consensus 379 ~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 379 CCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 999999999999998876 59999988877666555433
No 106
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.39 E-value=1.8e-11 Score=127.84 Aligned_cols=144 Identities=9% Similarity=0.055 Sum_probs=105.2
Q ss_pred hhhhcCCCh-hhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCC
Q 022513 42 FKNEMHFDI-AGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLK 120 (296)
Q Consensus 42 l~~~l~~s~-~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (296)
+++..+.+. ...++..+++.+...++.+++|+++|| +|||+++.......++..........
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~---------------- 104 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFH---------------- 104 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 333444433 345667778888999999999999999 79999864422221111111111110
Q ss_pred cchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHH
Q 022513 121 GAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFL 200 (296)
Q Consensus 121 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~ 200 (296)
..+++.+++.|+++|++.+...+...+++.|.+++++ ++...++.+.+.++|..+||.+++++....+|++.|.
T Consensus 105 ~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~ 178 (1140)
T PRK06814 105 LNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA 178 (1140)
T ss_pred HhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 1246789999999999999999999999999999765 7888899999999999999999999988889998884
Q ss_pred HHHHHHHH
Q 022513 201 ISSVATLI 208 (296)
Q Consensus 201 i~~~~~~~ 208 (296)
..+++.++
T Consensus 179 ~~~~~~~~ 186 (1140)
T PRK06814 179 LLMGIAVL 186 (1140)
T ss_pred HHHHHHHH
Confidence 44443333
No 107
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.38 E-value=2.2e-11 Score=112.80 Aligned_cols=161 Identities=14% Similarity=-0.073 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 022513 23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQ 102 (296)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~ 102 (296)
..++....++....+++.|+++ .|++..+.+.......++..++.++.|+++|| +|||+.+..+.+...++.+.+...
T Consensus 228 ~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~ 305 (406)
T PRK11551 228 SYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAA 305 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445566777788888865 79999999999989999999999999999999 799999887665555554433221
Q ss_pred hhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Q 022513 103 AYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIG 182 (296)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~ 182 (296)
. +...+.+..++.|++.++..+...++..|.+|+++ |++..++++....+|..++
T Consensus 306 ~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g 360 (406)
T PRK11551 306 P-------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGSMAG 360 (406)
T ss_pred C-------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHHHHH
Confidence 1 22334455566777776677788888999998765 7888899988999999999
Q ss_pred Hhhhhhhcccc-chhHHHHHHHHHHHHHH
Q 022513 183 VTAIVYVFIDQ-GWWLGFLISSVATLIGL 210 (296)
Q Consensus 183 ~~~~~~l~~~~-gw~~~f~i~~~~~~~~~ 210 (296)
|.+.+++.++. +|...+.+...+.+++.
T Consensus 361 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK11551 361 PLLAGQLLALGRSTVGVIGASIPVILVAA 389 (406)
T ss_pred hhhHhhhhccCCchHHHHHHHHHHHHHHH
Confidence 99999987764 45555555544444433
No 108
>PRK15075 citrate-proton symporter; Provisional
Probab=99.38 E-value=2e-11 Score=114.53 Aligned_cols=151 Identities=16% Similarity=0.143 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHH-HH
Q 022513 22 VLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVM-LT 100 (296)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~-~~ 100 (296)
...++....++++..++|.|+++.+|++..++++......++..++.+++|+++|| +|||+++..+..+..+...+ ..
T Consensus 245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~ 323 (434)
T PRK15075 245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALS 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Confidence 33444566677888999999999899999888888878888889999999999999 79999887765443322211 11
Q ss_pred HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH-HHHHHH
Q 022513 101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF-ATTLAA 179 (296)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~-~~~~G~ 179 (296)
... . ...........++.+++.+...+....+..|.+|++. |++.+++.+. +..+++
T Consensus 324 ~~~--~--------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~g 381 (434)
T PRK15075 324 WLV--A--------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIFG 381 (434)
T ss_pred HHH--c--------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHHh
Confidence 111 0 0112223333444556666666666688899999765 6777777544 334457
Q ss_pred HHHHhhhhhhccccch
Q 022513 180 MIGVTAIVYVFIDQGW 195 (296)
Q Consensus 180 ~i~~~~~~~l~~~~gw 195 (296)
.++|.+.+++.+..|+
T Consensus 382 ~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 382 GFTPAISTWLIHVTGD 397 (434)
T ss_pred hhHHHHHHHHHHhcCC
Confidence 7899999999887775
No 109
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.38 E-value=2.9e-11 Score=111.38 Aligned_cols=155 Identities=14% Similarity=0.109 Sum_probs=114.8
Q ss_pred HHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 022513 29 MGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSL 108 (296)
Q Consensus 29 ~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~ 108 (296)
..+.....+++.|+++ .|.+..+.+...+...++..++.++.|+++|| +|||+.+..+..+..++.+... ..
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~~----- 285 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-SQ----- 285 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-hh-----
Confidence 3334445677888865 69998888888888888999999999999999 7999999888777776654432 10
Q ss_pred CCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Q 022513 109 HPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY 188 (296)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~ 188 (296)
......+.+.+++.+...|...+...|..|+++ +++..+.++...++|..++|.++++
T Consensus 286 ----------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~~~G~ 343 (381)
T PRK03633 286 ----------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPSFTAM 343 (381)
T ss_pred ----------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344556666666667778888888876432 4455566667789999999999999
Q ss_pred hccccchhHHHHHHHHHHHHHHHHH
Q 022513 189 VFIDQGWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 189 l~~~~gw~~~f~i~~~~~~~~~i~~ 213 (296)
+.++.+|++.|.+.+.+.++..+..
T Consensus 344 l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 344 LMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHH
Confidence 9999999999988777666554443
No 110
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.37 E-value=4.3e-11 Score=108.99 Aligned_cols=178 Identities=17% Similarity=0.088 Sum_probs=122.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHH-HHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFAT-CLVFGTLEV 93 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~-i~~~~~~~~ 93 (296)
|..+......++.....+....+++.|+++.+|.+..+++.......++..++.+++|+++|| +|||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHH
Confidence 345556666777777778888899999999999999999998888899999999999999999 799861 111111111
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
++.+........... ............+.+.+.+ ..+...++.+|.+|+++ |++..++++.
T Consensus 294 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 354 (399)
T TIGR00893 294 IAGLVLSLLMFATNY------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGLINS 354 (399)
T ss_pred HHHHHHHHHHHHhcc------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHHHHH
Confidence 111111111000000 0112222222333333434 67888899999998655 7889999998
Q ss_pred HHHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHH
Q 022513 174 ATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIA 212 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~ 212 (296)
..++|..++|.+.+++.+..| |+..|.+.+++.+++.+.
T Consensus 355 ~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 355 LGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred HHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 899999999999999999888 998888777766655444
No 111
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.37 E-value=1.1e-11 Score=118.88 Aligned_cols=149 Identities=15% Similarity=0.102 Sum_probs=110.9
Q ss_pred HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513 36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK 115 (296)
Q Consensus 36 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 115 (296)
.....++.+++|-+ ....|+...+.++..+..++.|.++|. ||||..++.+.++.++|.++.+.+.
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~------------ 129 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ------------ 129 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC------------
Confidence 45556788888886 456778888999999999999999999 7999999999999999999877553
Q ss_pred CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccch
Q 022513 116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGW 195 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw 195 (296)
+...++++..+.|+|.|... .....++|..|.+. |.................++.++..+..+.+|
T Consensus 130 -------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~W 195 (599)
T PF06609_consen 130 -------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGW 195 (599)
T ss_pred -------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCc
Confidence 45679999999999977665 45566899998654 44444433333333333455555555556789
Q ss_pred hHHHHHHHHHHHHHHHH
Q 022513 196 WLGFLISSVATLIGLIA 212 (296)
Q Consensus 196 ~~~f~i~~~~~~~~~i~ 212 (296)
||.|++..+...++++.
T Consensus 196 Rw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 196 RWIFYIFIIWSGIALVL 212 (599)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 99999888766665443
No 112
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.37 E-value=2.9e-12 Score=99.65 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcC
Q 022513 59 NFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGC 138 (296)
Q Consensus 59 ~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~ 138 (296)
.+.++..++.++.|+++|| +|||+.+..+..+..++.+...... +...+.+.+++.|++.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~ 65 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSS-------------------NITVLIIARFLQGFGA 65 (141)
T ss_pred eehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHH
Confidence 4456778889999999999 7999999998888887766654432 2456777889999999
Q ss_pred cCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513 139 GGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 139 g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 213 (296)
+...+....+..|.+|+++ |++..+..+....+|..+++.+.+++.+..+|++.+.+..+..++..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (141)
T TIGR00880 66 AFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILL 134 (141)
T ss_pred HHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 8888889999999998654 77888888889999999999999999888899988888776655554443
No 113
>PRK12382 putative transporter; Provisional
Probab=99.37 E-value=1.9e-11 Score=112.78 Aligned_cols=160 Identities=20% Similarity=0.241 Sum_probs=120.9
Q ss_pred HHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 022513 26 LENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYS 105 (296)
Q Consensus 26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~ 105 (296)
+....+..+..+.+.|+++ .+++. .+.....+.++..++.++.|++.|| +||||.+..+..+..++.+++....
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~-- 300 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP-- 300 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc--
Confidence 3445555666777788764 45543 4455556677778899999999999 7999999888887777765544321
Q ss_pred cCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhh
Q 022513 106 KSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTA 185 (296)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~ 185 (296)
+...+++..++.|++.+...+...+...|.+|+++ |++.+++++...++|..++|.+
T Consensus 301 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~~~ 357 (392)
T PRK12382 301 -----------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSGPL 357 (392)
T ss_pred -----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 23455667788888888777777788888887543 7899999999999999999999
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022513 186 IVYVFIDQGWWLGFLISSVATLIGLIALA 214 (296)
Q Consensus 186 ~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 214 (296)
.+++.++.||+..|.+.+++.+++.++.+
T Consensus 358 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 358 AGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988877766655543
No 114
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.36 E-value=2.6e-11 Score=110.80 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=107.3
Q ss_pred hHHHHhhhhcC--CChhhHHHHHHH--HH---HHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 022513 37 SMVLYFKNEMH--FDIAGASNTLTN--FF---GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLH 109 (296)
Q Consensus 37 ~l~~yl~~~l~--~s~~~a~~~~~~--~~---~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~ 109 (296)
++..++.++.. .++++.+...+. +. +...++.++.|+++|| +|||+++..+.++..++.+++..+.......
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATIG 92 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhhH
Confidence 34445555443 334444443332 22 2234688999999999 7999999999999988887766543211000
Q ss_pred CCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 022513 110 PPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV 189 (296)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l 189 (296)
......++++|++.|++.+...+..+++++|.+|+++ |+...+..+.+..+|..+++.+...+
T Consensus 93 -----------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 93 -----------IWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred -----------HHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012357889999999999999999999999998665 67777888888888888888766544
Q ss_pred c--------cccchhHHHHHHHHHHHHHH
Q 022513 190 F--------IDQGWWLGFLISSVATLIGL 210 (296)
Q Consensus 190 ~--------~~~gw~~~f~i~~~~~~~~~ 210 (296)
. +..+|++.|.+.+++.++..
T Consensus 156 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 156 SYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 2 35689999987766554443
No 115
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.36 E-value=5.4e-11 Score=107.45 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=116.2
Q ss_pred HHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 022513 32 IANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPP 111 (296)
Q Consensus 32 ~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~ 111 (296)
......+.+.+++.++++..+++++..++..+.+++++..|++.+| +|+|+.++.++.++++|..++.-++.
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~------- 100 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAAS------- 100 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhh-------
Confidence 4566778889999999999999999999999999999999999999 79999999999999999988875542
Q ss_pred CCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 022513 112 DCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI 191 (296)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 191 (296)
...+..++++.++.+.|.|..+++.+++++.+.+++... .-.+..+....+|+.++|.+++++..
T Consensus 101 ---------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~------~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 101 ---------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAA------FRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred ---------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHH------HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999875422 22345566678899999988877644
No 116
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.36 E-value=3.1e-11 Score=112.46 Aligned_cols=159 Identities=11% Similarity=-0.059 Sum_probs=121.5
Q ss_pred HHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 022513 31 FIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHP 110 (296)
Q Consensus 31 ~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~ 110 (296)
..+...+++.|+++.+|.+....+.+.+...++..++.++.++++|| .++++.+..+.++..++.+++....
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLMP------- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHccc-------
Confidence 34566788899988899999999999888899999999999999999 6888888887777666655443221
Q ss_pred CCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc
Q 022513 111 PDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF 190 (296)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~ 190 (296)
+.....++.++.|++.+...+...++..|.+|++. |++.+++++...++|..+++.+.+++.
T Consensus 311 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G~l~ 372 (417)
T PRK10489 311 ------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLGGLG 372 (417)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence 23445566777788777666666788888888543 788899988888999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHh
Q 022513 191 IDQGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 191 ~~~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
+..|++..+.+.+++.++..++...
T Consensus 373 ~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 373 AMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHhchhhHHHHHHHHHHHHHHHHHH
Confidence 9888887777666554443333333
No 117
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.36 E-value=4.8e-11 Score=111.85 Aligned_cols=166 Identities=16% Similarity=0.049 Sum_probs=102.9
Q ss_pred HHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhh
Q 022513 25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAY 104 (296)
Q Consensus 25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~ 104 (296)
+.....+|+...++|.|+++++|++..+++...++...+..++.++.|+++|| +|||+.+.++.++..+..+.......
T Consensus 253 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~ 331 (432)
T PRK10406 253 AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQ 331 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788899999999999999998888887777777778888899999999 79999887766544333222211110
Q ss_pred ccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH-HHHHHHH
Q 022513 105 SKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT-LAAMIGV 183 (296)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~-~G~~i~~ 183 (296)
. ..+....+....+..++.+...+....+.+|.||++. |++.+++.+...+ +++..+|
T Consensus 332 -~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~~~p 390 (432)
T PRK10406 332 -N--------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGGSAE 390 (432)
T ss_pred -c--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHhHHH
Confidence 0 0011111111122222233333456678899999876 7888888775544 3344577
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 184 TAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 184 ~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
.+.+++.....|...+.+.++..+++.+.
T Consensus 391 ~~~~~l~~~g~~~~~~~~~~~~~~i~~~~ 419 (432)
T PRK10406 391 YVALSLKSIGMETAFFWYVTLMAVVAFLV 419 (432)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 77776643323555555554444444433
No 118
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.35 E-value=5.8e-11 Score=113.25 Aligned_cols=175 Identities=8% Similarity=0.070 Sum_probs=129.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC-----chhHH-H
Q 022513 12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-----SRFAT-C 85 (296)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-----GRr~~-i 85 (296)
..+|..+.++...+......+.....++.++++ .|.|.++.+....+ ... .++.++.|+++|| + ||||. +
T Consensus 9 ~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~l 84 (491)
T PRK11010 9 FQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLV-GQA-YVFKFLWSPLMDR-YTPPFLGRRRGWL 84 (491)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHc-ccccCCCCchHHH
Confidence 345556667777777777777777778888754 58888888775222 222 3688999999999 7 99986 5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhh
Q 022513 86 LVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALA 165 (296)
Q Consensus 86 ~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~ 165 (296)
..+.+...++.+.+.... + ..+...+.+.+++.+++.+...+...++..|.+|+++ |+
T Consensus 85 l~~~i~~~~~~~~~a~~~--~--------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg 142 (491)
T PRK11010 85 LATQLLLLVAIAAMGFLE--P--------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RG 142 (491)
T ss_pred HHHHHHHHHHHHHHHHcC--C--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hH
Confidence 566665656655544431 1 2345677778889999888888899999999998554 67
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcc-ccchhHHHHHHHHHHHHHHHH
Q 022513 166 SYFNFYLFATTLAAMIGVTAIVYVFI-DQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 166 ~~~~~~~~~~~~G~~i~~~~~~~l~~-~~gw~~~f~i~~~~~~~~~i~ 212 (296)
+..++...+..+|..+++.+..++.+ ..|||..|++.+++.++..+.
T Consensus 143 ~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~ 190 (491)
T PRK11010 143 AGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIA 190 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 77888888899999999988888887 469999999887766554443
No 119
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.34 E-value=7.4e-11 Score=108.74 Aligned_cols=155 Identities=11% Similarity=-0.081 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh----HHHHHHHHHHHHHHHHH
Q 022513 24 SALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF----ATCLVFGTLEVLSLVML 99 (296)
Q Consensus 24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr----~~i~~~~~~~~ig~~~~ 99 (296)
.+....+...+.++++.|++ ++|.|..+.+++.+++.+...++.+++|+++|| +||+ +.+.+...+.. +..
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~---~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLFA---VAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHHH---HHH
Confidence 44445555556678888885 579999999999999999999999999999999 7984 33322221111 111
Q ss_pred HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 022513 100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAA 179 (296)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 179 (296)
... ..+.+.+++.|++.+++.+...+...++..|..+ + |+..++......++|.
T Consensus 88 ~~~------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~-~-------~~~a~~~~~~~~~lg~ 141 (382)
T PRK11128 88 WFG------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK-Q-------IGLDYGKVRLWGSIAF 141 (382)
T ss_pred HHh------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh-h-------ccCCcchHHHHHHHHH
Confidence 111 1245677788999999988888887777666421 1 3455555666778999
Q ss_pred HHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513 180 MIGVTAIVYVFIDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 180 ~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~ 209 (296)
.++|.+++++.++.||+..|++.++..++.
T Consensus 142 ~igp~lgg~l~~~~g~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 142 VIGSALTGKLVSWFGEQAILWILTAGVASM 171 (382)
T ss_pred HHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 999999999999999999998776544433
No 120
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.34 E-value=3.7e-11 Score=112.31 Aligned_cols=171 Identities=15% Similarity=0.117 Sum_probs=118.8
Q ss_pred HHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc---CchhH-HHHHHHHHHHHHHHHHH
Q 022513 25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFA-TCLVFGTLEVLSLVMLT 100 (296)
Q Consensus 25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GRr~-~i~~~~~~~~ig~~~~~ 100 (296)
+..+.....+..+++.|+++++|+++.+++++.++..+...+..|+.|+++||. +|||| .++++.....++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 344555556667889999999999999999999999999999999999999972 58855 56667777776666554
Q ss_pred HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 022513 101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAM 180 (296)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 180 (296)
... ... .......+++.+++.+++.+....+..++.+|..++. ++ |++..++.+...++|+.
T Consensus 89 ~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~~---R~~~~~~~~~~~~~g~~ 150 (437)
T TIGR00792 89 TTP---DFS----------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP--RE---RESLSTFRRFGATLGGL 150 (437)
T ss_pred hCC---CCC----------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH--HH---HHHHHHHHHHHHHHHHH
Confidence 332 110 0123455666677778888877777788888887532 23 56666776667777776
Q ss_pred HHHhhhhhhc-------cccchhHHHHHHHHHHHHHHHHH
Q 022513 181 IGVTAIVYVF-------IDQGWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 181 i~~~~~~~l~-------~~~gw~~~f~i~~~~~~~~~i~~ 213 (296)
+++.+.+.+. +..+|++.+.+.+++.++..+..
T Consensus 151 l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~ 190 (437)
T TIGR00792 151 LVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIIC 190 (437)
T ss_pred HHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 6655443332 24689988887776655544433
No 121
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.33 E-value=1.5e-11 Score=114.81 Aligned_cols=155 Identities=13% Similarity=-0.003 Sum_probs=115.2
Q ss_pred HHhHHhHHHHhhhhc---CCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 022513 32 IANGISMVLYFKNEM---HFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSL 108 (296)
Q Consensus 32 ~~~~~~l~~yl~~~l---~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~ 108 (296)
......++.|+.+.+ +.+..+.+.+.++..++..++.+++|+++|| +|||+.+..+.++..++.+++..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~----- 313 (420)
T PRK09528 240 DVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFAT----- 313 (420)
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcc-----
Confidence 334445677776543 5566677788888888888999999999999 7999999888887777766654432
Q ss_pred CCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH-HHHHHHHHHHHHHhhhh
Q 022513 109 HPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF-YLFATTLAAMIGVTAIV 187 (296)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~ 187 (296)
+...+++.+.+.+++.+...+....++.|.+|++. +++.++. ++...++|..+++.+.+
T Consensus 314 --------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G 373 (420)
T PRK09528 314 --------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAG 373 (420)
T ss_pred --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHH
Confidence 23456677888888877766777788888888654 4555443 45678899999999999
Q ss_pred hhccccchhHHHHHHHHHHHHHHHH
Q 022513 188 YVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 188 ~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
++.+..||+..|.+.+++.++..++
T Consensus 374 ~l~~~~G~~~~f~~~~~~~~i~~~~ 398 (420)
T PRK09528 374 NLYDSIGFQGTYLILGGIVLLFTLI 398 (420)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHH
Confidence 9999999999998877666554433
No 122
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.33 E-value=4.8e-11 Score=112.62 Aligned_cols=197 Identities=15% Similarity=0.089 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhh---cCchhHHHHHH-HHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDT---YLSRFATCLVF-GTLE 92 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr---~~GRr~~i~~~-~~~~ 92 (296)
++.+....+...+++-....+++.|+ +++|.+....+.+..+..+...+.+++.|+++|| .+||||.++.+ .+..
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 34444455555666544456666665 6799999999999999999999999999999994 27999998875 4445
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
+++.+++..+.........+- +.-+.......+.++..+..++.....++..++++|+.|+++++ ++...++..
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~--~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~ 158 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNL--DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFS 158 (477)
T ss_pred HHHHHHHHhCchhhhhccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHH
Confidence 555555444321110000000 00000011133445555566677777888899999999976521 356777888
Q ss_pred HHHHHHHHHHHhhhhhh--ccc-------------cchhHHHHHHHHHHHHHHHHHHhcCCce
Q 022513 173 FATTLAAMIGVTAIVYV--FID-------------QGWWLGFLISSVATLIGLIALAIGKPFY 220 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l--~~~-------------~gw~~~f~i~~~~~~~~~i~~~~~~~~~ 220 (296)
...++|+.+|+.++++. .+. .+.+..|.+.+++.+++.++.+...++.
T Consensus 159 ~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 159 FFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 88999999998877654 111 1467889888887777666555544443
No 123
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.33 E-value=3.5e-11 Score=109.54 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=108.2
Q ss_pred HHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc----CchhHHH-HHHHHHHHHHHHHHHHHhhccCCC
Q 022513 35 GISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY----LSRFATC-LVFGTLEVLSLVMLTIQAYSKSLH 109 (296)
Q Consensus 35 ~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~----~GRr~~i-~~~~~~~~ig~~~~~~~~~~~~~~ 109 (296)
.....+.+.+++|+|.++.+..... .....+ .++.|+++||+ +||||.+ +.+.++..+....+.+.. +
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~--~--- 79 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV--P--- 79 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC--c---
Confidence 3334445566789999999887644 333333 88999999994 3999975 455555555544443221 1
Q ss_pred CCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 022513 110 PPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV 189 (296)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l 189 (296)
..+...+....++.+++.+...+...++++|.+|+++ |+...++...+.++|..+++.+++++
T Consensus 80 -----------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l 142 (356)
T TIGR00901 80 -----------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVL 142 (356)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234445555566777777778888999999998654 77888888888999999999988888
Q ss_pred ccccc--------hhHHHHHHHHHHHHHHHH
Q 022513 190 FIDQG--------WWLGFLISSVATLIGLIA 212 (296)
Q Consensus 190 ~~~~g--------w~~~f~i~~~~~~~~~i~ 212 (296)
....+ ||..|.+.++..++..+.
T Consensus 143 ~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~ 173 (356)
T TIGR00901 143 ASPEFANTGLITLWGYIFFWTALLILPGLLV 173 (356)
T ss_pred hhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence 77777 999998888766655443
No 124
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.33 E-value=6.1e-11 Score=110.96 Aligned_cols=160 Identities=15% Similarity=0.000 Sum_probs=109.2
Q ss_pred HHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q 022513 39 VLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSC 118 (296)
Q Consensus 39 ~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 118 (296)
.++..+++|++..+++.......++..++.+++|+++|| +|||+.+.++.++..++.+++........ .. .
T Consensus 307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~ 377 (481)
T TIGR00879 307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFV-TG-------S 377 (481)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhccc-CC-------c
Confidence 344456789988888888888888899999999999999 79999999888777777666553211000 00 0
Q ss_pred CCcchHHHHHHHH-HHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhH
Q 022513 119 LKGAIAAYFYGSL-YLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWL 197 (296)
Q Consensus 119 ~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~ 197 (296)
+.......+.... +..+.+.+ ..+....+.+|.+|++. |++..+..+...++|+.+++.+.+++.++.+|++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~ 450 (481)
T TIGR00879 378 SKSSGNVAIVFILLFIAFFAMG-WGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLESIGVGG 450 (481)
T ss_pred ccchhHHHHHHHHHHHHHHHcc-ccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 0000122222222 22223322 34666677799998654 7888888888999999999999999988888998
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022513 198 GFLISSVATLIGLIALA 214 (296)
Q Consensus 198 ~f~i~~~~~~~~~i~~~ 214 (296)
.|++.+++.+++.+..+
T Consensus 451 ~f~~~~~~~~~~~i~~~ 467 (481)
T TIGR00879 451 VFIFFGGLNVLGLIFVY 467 (481)
T ss_pred eehhHHHHHHHHHHHHh
Confidence 88877776665555443
No 125
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.1e-10 Score=106.68 Aligned_cols=177 Identities=17% Similarity=0.126 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
+.++..+...++...+.|...+|+.+|+++..|+|.+..+++...+.++..+|.+++|+++|| +.|+++.....+..+
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 446677778888888889999999999999999999999999999999999999999999999 778888777666666
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 174 (296)
..+.+.... .+.....+..++.|+..+........-.++..|++ ++...+++...
T Consensus 289 ~~l~l~~~~------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~-------~~~a~sl~~aa 343 (394)
T COG2814 289 ALLALTFTG------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAPDA-------ADLAGSLNVAA 343 (394)
T ss_pred HHHHHHHhc------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCc-------hHHHHHHHHHH
Confidence 555544432 12344555555666666555444445455533332 45666777788
Q ss_pred HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 022513 175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP 218 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~ 218 (296)
.|+|..+|..+++.+.++.|+....+..+++.++++++.+...+
T Consensus 344 ~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 344 FNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988888877766555443
No 126
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.33 E-value=1.4e-10 Score=106.85 Aligned_cols=161 Identities=9% Similarity=-0.082 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH-HHHHH
Q 022513 18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL-EVLSL 96 (296)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~-~~ig~ 96 (296)
+.+....+....++-...++++.|++ ++|+|..+.+.+.+.+.+...+++++.|+++|| +||++.......+ ..+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHH
Confidence 33444455555554445577888885 689999999999999999999999999999999 6985433211111 11111
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
+.+... ..+.+.+++.|.+.+.+.+...+...++..|. + ++|+..++......+
T Consensus 85 ~~~~~~------------------~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~-------~~~~~~~g~~~~~~s 138 (382)
T TIGR00902 85 AAFSAG------------------AHNAWLLFIAIGLFALFFSAGMPIGDALANTW-Q-------KQFGLDYGKVRLIGS 138 (382)
T ss_pred HHHHHh------------------hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH-H-------HHcCCCccHHHHHHH
Confidence 111111 12456788889888888887777777765442 1 125677788788899
Q ss_pred HHHHHHHhhhhhhccccchhHHHHHHHHHH
Q 022513 177 LAAMIGVTAIVYVFIDQGWWLGFLISSVAT 206 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~ 206 (296)
+|..++|.+++++.+..||+..|.+.++..
T Consensus 139 lG~~~g~~l~g~l~~~~g~~~~f~~~~~~~ 168 (382)
T TIGR00902 139 AAFIIGSALFGGLIGMFDEQNILAILTAGL 168 (382)
T ss_pred HHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 999999999999999999999988765543
No 127
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.32 E-value=1.3e-10 Score=107.18 Aligned_cols=169 Identities=9% Similarity=-0.049 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
|..+..++..++...+.....++.+.|+++ +|.+..+.+...+...++..++.++.+++.|| +|+|+.+.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHH
Confidence 445555666666677777778889999965 89999999998888888888899999999999 7999999999999888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH-H
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL-F 173 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~-~ 173 (296)
+.+.+.... +...+++...+.|+..|...+....++.+. |+++ +++..+.++ .
T Consensus 283 ~~~~~~~~~-------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~ 336 (382)
T TIGR00902 283 RWAIIGAIE-------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNAL 336 (382)
T ss_pred HHHHHHhHh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHH
Confidence 877665432 345677788999999999999988999886 6443 567777765 4
Q ss_pred HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
...+|..+++.++|++.++.|+ ..|.+.+++.++++++
T Consensus 337 ~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 337 AMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 6789999999999999998886 5566666655555433
No 128
>PTZ00207 hypothetical protein; Provisional
Probab=99.32 E-value=8.7e-11 Score=113.27 Aligned_cols=152 Identities=14% Similarity=0.023 Sum_probs=112.2
Q ss_pred HHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 022513 32 IANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPP 111 (296)
Q Consensus 32 ~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~ 111 (296)
|+...+. ..+++++|+|..+.+++.++.. ...++.+++|+++|| +|||+++.++.++..+|.+++.++.. ...
T Consensus 44 y~fsv~s-~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~-~~i--- 116 (591)
T PTZ00207 44 YAFNLIS-GAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQ-EVI--- 116 (591)
T ss_pred HHHHHHH-HHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhc-ccc---
Confidence 4554333 4578899999999888777643 334566778999999 79999999999999999998887621 000
Q ss_pred CCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHH-HHhhhhhhc
Q 022513 112 DCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI-GVTAIVYVF 190 (296)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~~~~~l~ 190 (296)
..+.+.+++.|++.|+|.+...+.....+.+.||+ + |+...++......+|+.+ +++..+++.
T Consensus 117 ---------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 117 ---------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-N------RGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred ---------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-h------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12467888999999999988888888888999973 2 788999988888999875 555555554
Q ss_pred cccchhHHHHHHHHHHHH
Q 022513 191 IDQGWWLGFLISSVATLI 208 (296)
Q Consensus 191 ~~~gw~~~f~i~~~~~~~ 208 (296)
+ +|+..|++.+++.++
T Consensus 181 ~--~~~~~fl~l~vl~~v 196 (591)
T PTZ00207 181 D--NTSAYFFFLMSFALV 196 (591)
T ss_pred H--hHHHHHHHHHHHHHH
Confidence 3 466666655554433
No 129
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.31 E-value=1.2e-10 Score=108.04 Aligned_cols=165 Identities=11% Similarity=0.067 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC-----chhH-HHHHHHHHHHH
Q 022513 21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-----SRFA-TCLVFGTLEVL 94 (296)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-----GRr~-~i~~~~~~~~i 94 (296)
+...+.+...+.-...-+|.|+++ .|+|.++.+++..+... .+..++.|+++|| + |||| .+.++.++..+
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHH
Confidence 334555666655566788888876 49999999988655543 6889999999999 7 8876 56666666666
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 174 (296)
+...+.... + ..+...+++..++.++..+...+...++..|.+|+++ |++..+....+
T Consensus 81 ~~~~l~~~~--~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g 138 (402)
T PRK11902 81 SIAAMAFCP--P--------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLG 138 (402)
T ss_pred HHHHHHhcC--c--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHH
Confidence 655544331 1 1234555555566777777788889999999988654 67777777778
Q ss_pred HHHHHHHHHhhhhhhccc-cchhHHHHHHHHHHHHHHH
Q 022513 175 TTLAAMIGVTAIVYVFID-QGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~-~gw~~~f~i~~~~~~~~~i 211 (296)
.++|..+++.+..++.+. .|||..|++.++..++..+
T Consensus 139 ~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 139 YRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 888999988888888775 5999999987776554433
No 130
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.30 E-value=1.6e-10 Score=110.26 Aligned_cols=177 Identities=17% Similarity=0.171 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHH-HHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLT-NFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~-~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
+......++...+.+....+.++|+.+++|++..+.+.... ...++..++.+++|+++|| +|||+.+.++.++..++.
T Consensus 225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~ 303 (491)
T PRK11010 225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSN 303 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH
Confidence 33333344555555566677888888889999999998874 4557888999999999999 799998877666555444
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
+.+...... ..+...+.+..++..+..|...+...++..+..+++. .++.++..+...+
T Consensus 304 l~~~~l~~~---------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~ 362 (491)
T PRK11010 304 AGYWLLSIT---------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSA 362 (491)
T ss_pred HHHHHHHhc---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHH
Confidence 333221110 0122223333444333334334455677777777654 4566777777789
Q ss_pred HHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 022513 177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIG 216 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~ 216 (296)
+|..+++.+.+++.+..||+..|.+.+++.+.+++.....
T Consensus 363 lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 363 VGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888889999998999999988887777765554443
No 131
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.30 E-value=1.4e-10 Score=109.82 Aligned_cols=184 Identities=17% Similarity=0.093 Sum_probs=142.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh--HHHHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF--ATCLVFGT 90 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr--~~i~~~~~ 90 (296)
+.|.+..-++..++.+-+...+......|.++++|++..+...+..+.++.+.+|++++|++.|| +|.| +++.++.+
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence 34566666667777777888888999999999999999998888888899999999999999999 7998 88887776
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513 91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF 170 (296)
Q Consensus 91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~ 170 (296)
++.+-.+.-.+.. .+... ...+.+.+++.-++.|+..|+.++..-++.+|+.|+.+ .+.+|++
T Consensus 358 ~~~~i~~~g~~G~-~~~~~----------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgl 420 (477)
T PF11700_consen 358 LWIIIPLYGLFGF-WPSFF----------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGL 420 (477)
T ss_pred HHHHHHHHHHHHh-hhccc----------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHH
Confidence 6633222211100 00000 01234557777778999999999999999999999765 5899999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHHH
Q 022513 171 YLFATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALA 214 (296)
Q Consensus 171 ~~~~~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~ 214 (296)
|.+..-..+.+||++.+.+.+..| -|.++....++.++++++++
T Consensus 421 y~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 421 YAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF 465 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988765 68888877777777776653
No 132
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.29 E-value=5.9e-11 Score=111.44 Aligned_cols=178 Identities=11% Similarity=0.028 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
++......++.....+++..++|.|+++..|++..++++......+++.++.+++|+++|| +|+++....+.....+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~~ 331 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLVT 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHH
Confidence 4444455556566678888999999999899999999988888888999999999999999 665443223332222111
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
+........+ ..+........++.|++..+..........|.+|++. |++..++++...+
T Consensus 332 ~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 391 (438)
T TIGR00712 332 IAVIVYWMNP--------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGY 391 (438)
T ss_pred HHHHHHHhcC--------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhhchHHH
Confidence 1111100001 0111222333344444332222222345678888654 7888888877777
Q ss_pred HHH-HHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513 177 LAA-MIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 177 ~G~-~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
+|+ .++|.+.+++.++.||..+|.+..++.+++.+..+.
T Consensus 392 ~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 392 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred hhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 764 679999999999889998888776655555544433
No 133
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.28 E-value=9.5e-11 Score=106.38 Aligned_cols=186 Identities=13% Similarity=0.053 Sum_probs=134.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513 14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ 93 (296)
.+..|.+....+..-.++.++..+++.|++++++.++.+++.....+.....+..+++|+++|| +|.+|++.+....++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHH
Confidence 4567888888888888899999999999999999999999999999999999999999999999 799888888887777
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
++..+...... ... +..+...+++..+..++..|.-...+..++...||.+ .+...++...
T Consensus 296 ~~~~~l~~~~~--~~~----------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vga 356 (417)
T COG2223 296 LAAALLSLFLT--GFG----------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVGA 356 (417)
T ss_pred HHHHHHHcccc--ccc----------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHHH
Confidence 77666554321 100 0122333333333444444444555556666666542 3566666666
Q ss_pred HHHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513 174 ATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIGKPF 219 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~~~~~ 219 (296)
..++|++.-|...+...+..| +..+|++...+.+++.++.+....|
T Consensus 357 ~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 357 IGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred hccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888877878887777766 8888888887777776655444333
No 134
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.28 E-value=1.6e-10 Score=109.86 Aligned_cols=172 Identities=10% Similarity=0.015 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhH-----HHHHHHHHH
Q 022513 18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-----TCLVFGTLE 92 (296)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~-----~i~~~~~~~ 92 (296)
+.+.+..++.....++...+++.|+.+++|++..+++...+...++..++.+++|+++|| +|||+ .........
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~ 333 (476)
T PLN00028 255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQT 333 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHH
Confidence 333333333444445667788999988999999999999999999999999999999999 78762 222111111
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
+.+........ ..+.....+..++.+++.+...+...++..|..|. .+++..++.+
T Consensus 334 l~~i~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~ 389 (476)
T PLN00028 334 LGGVFCIWLGR-----------------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRR-------SLGVISGLTG 389 (476)
T ss_pred HHHHHHHHhcc-----------------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccChh-------hchhhhhhhh
Confidence 11111111111 01223333444455555444444444555555431 2677777766
Q ss_pred HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
...++|+.+++.+.+ ..+..+|+.+|.+.+++.+++.++.+.
T Consensus 390 ~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 390 AGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred ccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 666777777665543 223446888998887776666555444
No 135
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.26 E-value=3.8e-10 Score=105.15 Aligned_cols=144 Identities=15% Similarity=0.006 Sum_probs=101.5
Q ss_pred HHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 022513 32 IANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPP 111 (296)
Q Consensus 32 ~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~ 111 (296)
+.+..+++.|+++ .|.+..+.+.......++..++.+++|+++|| +|||+.+..+.++..++.+++....
T Consensus 248 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~-------- 317 (426)
T PRK12307 248 WPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIP-------- 317 (426)
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 3456778888876 58998888888888888999999999999999 7999998888776655544333211
Q ss_pred CCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 022513 112 DCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI 191 (296)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 191 (296)
......+.+..+..+++..+..+..+.++.|.+|++. |++..+..+...++|+.++|.+.+++.+
T Consensus 318 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 318 ---------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred ---------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 0111111111222223333344566778889998654 7888888888889999999999999988
Q ss_pred ccchhHHHH
Q 022513 192 DQGWWLGFL 200 (296)
Q Consensus 192 ~~gw~~~f~ 200 (296)
..|+.....
T Consensus 383 ~~g~~~~~~ 391 (426)
T PRK12307 383 TMGLGAALT 391 (426)
T ss_pred cccHHHHHH
Confidence 887654433
No 136
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.25 E-value=9.4e-10 Score=102.07 Aligned_cols=165 Identities=12% Similarity=-0.010 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
++.......+.....+......+.|+.+++|+++.+.+.......++..++.++.|+++|| +|||+.+.++.++..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence 3444444444445455555667888888899999888877776677788899999999999 799999998888877777
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
++........ ..+...++++.++.|+|.+...+..........+ ++ +++..+.++....
T Consensus 296 ~~~~~~~~~~--------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~ 354 (406)
T PRK15402 296 LLAALATVIS--------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-VS------KGTVSAAMGMLSM 354 (406)
T ss_pred HHHHHHHHcc--------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-cc------ccHHHHHHHHHHH
Confidence 6665432111 1234456677888888888776666554433322 22 6788888888888
Q ss_pred HHHHHHHhhhhhhccccchhHHHHHHH
Q 022513 177 LAAMIGVTAIVYVFIDQGWWLGFLISS 203 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~ 203 (296)
+|..+|+.+.+++.+..++....+...
T Consensus 355 ~~~~~g~~~~~~l~~~~~~~~~~~~~~ 381 (406)
T PRK15402 355 LIFTVGIELSKHAYLGGGNGLFNLFNL 381 (406)
T ss_pred HHHHHHHHHHHhcccCCchHHHHHHHH
Confidence 999999999998877766554433333
No 137
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.25 E-value=2.4e-10 Score=106.63 Aligned_cols=164 Identities=7% Similarity=-0.131 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHH-HHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFAT-CLVFGTLEV 93 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~-i~~~~~~~~ 93 (296)
..+......++....++++.+++|.|+++ ..+.+..+++.......++..++.+++|+++|| +|||+. +....++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHH
Confidence 34455556677777888999999999977 357788888888888899999999999999999 797774 333333333
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
++.++ .... . . . ...+.+..+.++|.....+.......|.+|++. |++.+++.+.
T Consensus 322 ~~~~~-~~~~--~--------------~-~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~~ 376 (412)
T TIGR02332 322 AGWLL-ASAT--D--------------H-N-LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVINA 376 (412)
T ss_pred HHHHH-HHhc--C--------------C-H-HHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHHH
Confidence 33221 1111 0 1 1 111222223333332222333344456666443 7889999999
Q ss_pred HHHHHHHHHHhhhhhhcccc-chhHHHHHHHHH
Q 022513 174 ATTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVA 205 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~-gw~~~f~i~~~~ 205 (296)
..++|+.++|.+.+.+.+.. +|+.++++.+++
T Consensus 377 ~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 377 TGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 99999999999999988876 488888766554
No 138
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.24 E-value=3.1e-10 Score=101.94 Aligned_cols=163 Identities=10% Similarity=-0.024 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhh--cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNE--MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
+..+...+..++....-.++..+++.|+++. +|+++.+++...+.+.++..++.++++++.|| +|+||++.++.++.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHH
Confidence 3444444444554445567778999999853 79999999999999999999999999999999 79999988888777
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 93 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
+++.++..... .. ....+.++.|++.+...|...+...+.+|++. .+++. ..
T Consensus 219 ~~~~~l~~~~~------------------~~--~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-----~~asa--i~- 270 (310)
T TIGR01272 219 VLLSIGAALTH------------------GY--VAMWFVLALGLFNSIMFPTIFSLALNALGRHT-----SQGSG--IL- 270 (310)
T ss_pred HHHHHHHHHcC------------------CH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhhHH--HH-
Confidence 77654433321 11 12235557889999999998888888887542 12332 32
Q ss_pred HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHH
Q 022513 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVAT 206 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~ 206 (296)
....+|+.+.|.+.|.+.|..|.+.+|+++.++.
T Consensus 271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 4567899999999999999888888887665543
No 139
>PRK10504 putative transporter; Provisional
Probab=99.23 E-value=4.7e-10 Score=106.09 Aligned_cols=156 Identities=11% Similarity=-0.006 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
.....+...++...++.......+.|++..+|.++.+++.......++..++.++.|+++|| +|||+++..+..+..++
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALV 340 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHH
Confidence 34445555666666655555667778887889999999888887777788888999999999 79999999888877766
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT 175 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~ 175 (296)
..++..... ......+.+..++.|++.+...+....+..+.+|++. ++..++++++..
T Consensus 341 ~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~ 398 (471)
T PRK10504 341 SLLFMLVAL----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSMIM 398 (471)
T ss_pred HHHHHhccc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHHHH
Confidence 555443210 1122333445666778877777778888888888654 678888888889
Q ss_pred HHHHHHHHhhhhhhccccc
Q 022513 176 TLAAMIGVTAIVYVFIDQG 194 (296)
Q Consensus 176 ~~G~~i~~~~~~~l~~~~g 194 (296)
.+|..+|+.+.+.+.+..+
T Consensus 399 ~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 399 QLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999888877654433
No 140
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.22 E-value=2.2e-10 Score=107.01 Aligned_cols=161 Identities=16% Similarity=0.066 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
|..+..++..++...+++......+.|.+..++ +....+.......++..++.++.++++|| +|||+++.++.++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 344555555666666665555555555555555 45556666677788889999999999999 7999999999888877
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChh-hhhhhhhhHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPK-GAKALASYFNFYLF 173 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~-~~~~r~~~~~~~~~ 173 (296)
+.+.+.... .+...+++..++.+++.+...+...++++|..|.++.+ .++.++..++.+++
T Consensus 300 ~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 361 (437)
T TIGR00792 300 GYLIFFFAG------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTF 361 (437)
T ss_pred HHHHHHHcc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHH
Confidence 766554321 12344556667788888888888899999987743211 11236888888889
Q ss_pred HHHHHHHHHHhhhhhhccccch
Q 022513 174 ATTLAAMIGVTAIVYVFIDQGW 195 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~gw 195 (296)
...+|..+++.+.+++.+..||
T Consensus 362 ~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 362 VRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998887655444
No 141
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.22 E-value=9.7e-11 Score=107.21 Aligned_cols=142 Identities=11% Similarity=0.122 Sum_probs=99.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHH
Q 022513 48 FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYF 127 (296)
Q Consensus 48 ~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (296)
+++...+.+..+..++..+|+++.||++|+ +|||+++...++++++++++..++. ...+ ...-..++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~----~~~~--------~~~~m~~L 147 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSV----GTTS--------PLGVMMTL 147 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCC----CCCC--------CcchhhHH
Confidence 566677788888899999999999999999 7999999999999999988544332 1110 01346778
Q ss_pred HHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH----HHHHHHHHHHHhhhhhhcc-----------c
Q 022513 128 YGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL----FATTLAAMIGVTAIVYVFI-----------D 192 (296)
Q Consensus 128 ~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~----~~~~~G~~i~~~~~~~l~~-----------~ 192 (296)
...|+++|+|.|+-.|...+..+|....+. ||...+... ++.-.|+.++-++..-... .
T Consensus 148 ~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld 221 (538)
T KOG0252|consen 148 CFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLD 221 (538)
T ss_pred HHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHH
Confidence 889999999999999999999999876443 555554433 3444444444333322211 1
Q ss_pred cchhHHHHHHHHHHHH
Q 022513 193 QGWWLGFLISSVATLI 208 (296)
Q Consensus 193 ~gw~~~f~i~~~~~~~ 208 (296)
.-||..+.+.++..++
T Consensus 222 ~vWRl~~glg~vpa~~ 237 (538)
T KOG0252|consen 222 GVWRIIFGLGAVPALL 237 (538)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2388888776665443
No 142
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.21 E-value=7.8e-10 Score=105.88 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=129.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHH
Q 022513 11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT 90 (296)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~ 90 (296)
.+..|.+|.. .++.+++......-++-++. ++.-|+...+++..+..+-..+..+++|.++|| +.|||+++.+-+
T Consensus 9 ~~~Fr~lw~a---~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~ 83 (524)
T PF05977_consen 9 NRNFRRLWIA---QLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQL 83 (524)
T ss_pred CchHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHH
Confidence 3344545543 44444443333233333333 445677778888888888888999999999999 799999999988
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513 91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF 170 (296)
Q Consensus 91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~ 170 (296)
+..+..+.+.+..... ..+.+.+++..++.|++.+...|+..+++.|..|+++ .....++
T Consensus 84 ~~~~~~~~L~~l~~~~--------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al 143 (524)
T PF05977_consen 84 LRALVALLLAVLAFFG--------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANAL 143 (524)
T ss_pred HHHHHHHHHHHHHHhC--------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHH
Confidence 8776655555433211 2245677888899999999999999999999998654 5667777
Q ss_pred HHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022513 171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 171 ~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
.....|+...+||.++|.+....|-.+.|.+.++..++....+..
T Consensus 144 ~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~ 188 (524)
T PF05977_consen 144 NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR 188 (524)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999888778888898888776665544433
No 143
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.20 E-value=3.6e-10 Score=102.26 Aligned_cols=153 Identities=13% Similarity=0.023 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHHHHHhH-HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANG-ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
.++......++....+++.. ...+.|.++.+|.+..+.+.......++..++.++.+++.|| +|||+.+..+..+..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 289 (365)
T TIGR00900 211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGL 289 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHH
Confidence 34444555555566655555 667777777799999999998888899999999999999999 7999988877666555
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 174 (296)
+........ . +...+++..++.|++.+...+...+++.|.+|+++ |++..+.++..
T Consensus 290 ~~~~~~~~~-----------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~ 345 (365)
T TIGR00900 290 AILVVGLTP-----------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQFSL 345 (365)
T ss_pred HHHHHHhhc-----------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHH
Confidence 544433321 1 24556777888999999888888999999988543 78999999999
Q ss_pred HHHHHHHHHhhhhhhcccc
Q 022513 175 TTLAAMIGVTAIVYVFIDQ 193 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~ 193 (296)
.++|..+++.+.+++.++.
T Consensus 346 ~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 346 SHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999887754
No 144
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.20 E-value=1.5e-09 Score=102.52 Aligned_cols=175 Identities=10% Similarity=-0.024 Sum_probs=114.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHH--------H
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATC--------L 86 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i--------~ 86 (296)
+.++......++....++....++|.|+++.+|++..+++....+..++..++.+++|+++|| +++|+.. .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIF 339 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHH
Confidence 456677777788888888889999999999999999999998888889999999999999999 5654321 1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhh
Q 022513 87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS 166 (296)
Q Consensus 87 ~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~ 166 (296)
.+......+...+.... . ..+....++...+.+.+.++..+.......|..|. .++.
T Consensus 340 ~~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~g~ 396 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPY--L--------------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-------FLGF 396 (465)
T ss_pred HHHHHHHHHHHHHHHHH--c--------------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-------HHHH
Confidence 11111111111111111 0 01122233334444444444444443334454442 2688
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhccc---cchhHHHHHHHHHHHHHHHHH
Q 022513 167 YFNFYLFATTLAAMIGVTAIVYVFID---QGWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 167 ~~~~~~~~~~~G~~i~~~~~~~l~~~---~gw~~~f~i~~~~~~~~~i~~ 213 (296)
..+..+...++|+.++|.+.+++.+. .+|..+|.+.++..+++.+..
T Consensus 397 ~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 397 IKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 88888889999999999999988764 347888888877776665544
No 145
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.19 E-value=3e-10 Score=103.20 Aligned_cols=161 Identities=16% Similarity=0.101 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHH--HHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT--LEV 93 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~--~~~ 93 (296)
.++.+....++.....+++..+++.|+++.+|++..+++.......++..++.+++|+++||..+||+....... ...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 344555555666666677888999999999999999999999999999999999999999983233333222111 111
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
++....... + ..+.....+..++.|+..++..+....+..|.+|++. |++..++++.
T Consensus 297 ~~~~~~~~~---~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~ 353 (379)
T TIGR00881 297 VSLLVYWLN---P--------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFVGF 353 (379)
T ss_pred HHHHHHhcC---c--------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHHHH
Confidence 111111110 0 1122334444555665555555556677889988655 7889999999
Q ss_pred HHHHHHHHHHhhhhhhccccchhHHH
Q 022513 174 ATTLAAMIGVTAIVYVFIDQGWWLGF 199 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~gw~~~f 199 (296)
..++|+.++|.+.+++.++.||+..|
T Consensus 354 ~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 354 FAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred hhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999998887653
No 146
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.19 E-value=1.3e-09 Score=100.60 Aligned_cols=174 Identities=14% Similarity=0.053 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
++..+...++...+......+.+.|+++ .|+++++.+........ ...++.+++|++.|| +|+|+.+..+.++..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence 4444445556666566666777888875 79999999988777654 556778999999999 79999988877665333
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCC-CChhhhhhhhhhHHHHHHH
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE-NDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~-~~~~~~~~r~~~~~~~~~~ 174 (296)
.+......... . .......+....+.+++.|...+...+...+..++ +. +++.++.++..
T Consensus 288 ~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~ 348 (390)
T TIGR02718 288 ALLWFAQAAFW-L------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQST 348 (390)
T ss_pred HHHHHHHHHcc-c------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHH
Confidence 32222111100 0 01112233333444555666666666666666554 22 67888888888
Q ss_pred HHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513 175 TTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i 211 (296)
.++|..++|.+++++.+..|++..|.+.+++.+++.+
T Consensus 349 ~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 349 RDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 8999999999999999988998888887766555443
No 147
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.19 E-value=8.1e-10 Score=105.64 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhHHhHHHHhhhhcCCChhhHHH------------HHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513 24 SALENMGFIANGISMVLYFKNEMHFDIAGASN------------TLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL 91 (296)
Q Consensus 24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~------------~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~ 91 (296)
.++..+.+|++..++|.+++ +.|++...++. ...+..++..++.+++++++|| +|||++++++.++
T Consensus 297 ~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~ 374 (502)
T TIGR00887 297 WFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFI 374 (502)
T ss_pred HHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHH
Confidence 34455677888888888875 56776542211 1223334556678899999999 7999999888777
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
..++.+++....... + ....+....+...++..+..+....+.+|.+|++. |++..++.
T Consensus 375 ~~~~~~~l~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~g~~ 433 (502)
T TIGR00887 375 LTVLFFVLGFAYNHL--------------S-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAHGIS 433 (502)
T ss_pred HHHHHHHHHHHHHhc--------------c-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHHHHH
Confidence 666655544332100 0 00111111111222222234556677899999765 88999998
Q ss_pred HHHHHHHHHHHHhhhhhhccc----------cchhHHHHHHHHHHHHHHH
Q 022513 172 LFATTLAAMIGVTAIVYVFID----------QGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 172 ~~~~~~G~~i~~~~~~~l~~~----------~gw~~~f~i~~~~~~~~~i 211 (296)
+....+|++++|.+.+++.+. .++...|.+.++..+++.+
T Consensus 434 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 483 (502)
T TIGR00887 434 AASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL 483 (502)
T ss_pred HHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence 989999999999999888763 2344566666555554443
No 148
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.18 E-value=1.4e-09 Score=100.25 Aligned_cols=165 Identities=16% Similarity=0.037 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHH
Q 022513 18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV 97 (296)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~ 97 (296)
+......++...+.+....++++|+++.+|+++.+.+.......++..++.++.|+++|| +|||+.+..+..+..++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~ 280 (382)
T PRK10091 202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALL 280 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHH
Confidence 333333444444555556677888888899999999999999999999999999999999 7999999888877777665
Q ss_pred HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhc-ccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGA-GQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~-e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
++..... +.....+..++.++|.++..+....... +..+.+. ++.. ..+...+
T Consensus 281 ~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~ 334 (382)
T PRK10091 281 MLFFFGG------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQIAFN 334 (382)
T ss_pred HHHHHHh------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHHHHH
Confidence 4432210 1123334444555554444333333233 3322211 2322 2345678
Q ss_pred HHHHHHHhhhhhhccc-cchhHHHHHHHHHHHHH
Q 022513 177 LAAMIGVTAIVYVFID-QGWWLGFLISSVATLIG 209 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~~-~gw~~~f~i~~~~~~~~ 209 (296)
+|..+||.+++++.+. .+|+..+.+.++..++.
T Consensus 335 ~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~ 368 (382)
T PRK10091 335 LGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAA 368 (382)
T ss_pred HHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHH
Confidence 9999999999998875 68988888776655444
No 149
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.18 E-value=3.6e-10 Score=101.34 Aligned_cols=116 Identities=17% Similarity=0.051 Sum_probs=97.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHH
Q 022513 49 DIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFY 128 (296)
Q Consensus 49 s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (296)
+..-+|.+-+.|++..++.++..|.++|| .|||+++++|++..++...+...+. +...+.
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~-------------------~F~afv 125 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSR-------------------NFAAFV 125 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHH
Confidence 44567888889999999999999999999 5999999999988888766666553 345677
Q ss_pred HHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 022513 129 GSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI 191 (296)
Q Consensus 129 ~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 191 (296)
++|++.|+..|-. +.+-++++|.+++++ |+..++....+..+|..+||++++++..
T Consensus 126 ~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 126 LARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 7799999998855 667899999999765 6777888888999999999999999876
No 150
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.18 E-value=3e-09 Score=97.32 Aligned_cols=161 Identities=12% Similarity=0.024 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHH
Q 022513 18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV 97 (296)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~ 97 (296)
+.......+....++....+.+.|+++++|.++.+.+.+.....++..++.+++|++.|| +|||+.+..+..+..++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~ 287 (385)
T TIGR00710 209 WGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAV 287 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHH
Confidence 333334444455566677778888888999999999998888888999999999999999 7999999888777777766
Q ss_pred HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHH
Q 022513 98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL 177 (296)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (296)
++....... ......++....+.|+|.+...+.......|.+|+ . +++..+.++.....
T Consensus 288 ~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~~ 346 (385)
T TIGR00710 288 LLEITAILG--------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V------AGTASALFGTLRLV 346 (385)
T ss_pred HHHHHHHhc--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c------chHHHHHHHHHHHH
Confidence 555432110 01233445556678888888888888888887763 2 56666766655544
Q ss_pred -HHHHHHhhhhhhccccchhHHHHH
Q 022513 178 -AAMIGVTAIVYVFIDQGWWLGFLI 201 (296)
Q Consensus 178 -G~~i~~~~~~~l~~~~gw~~~f~i 201 (296)
|...++. .+.+.+..+|...+..
T Consensus 347 ~g~i~~~~-~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 347 LGAIVGYL-VSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHH-HHhccccChHHHHHHH
Confidence 4444444 4455554455444433
No 151
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.16 E-value=3.1e-09 Score=100.57 Aligned_cols=151 Identities=8% Similarity=-0.051 Sum_probs=101.7
Q ss_pred HhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCC
Q 022513 41 YFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLK 120 (296)
Q Consensus 41 yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (296)
++.++.|++............+...++.+++|+++|| +|||+.++.+.++..++.+++......+
T Consensus 296 ~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~-------------- 360 (479)
T PRK10077 296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ-------------- 360 (479)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcC--------------
Confidence 3445688887766666666777888999999999999 7999999999998888877665432100
Q ss_pred cchHHHHHHHHHHHHHcCcC-cccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhh------hhcccc
Q 022513 121 GAIAAYFYGSLYLYSLGCGG-NRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIV------YVFIDQ 193 (296)
Q Consensus 121 ~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~------~l~~~~ 193 (296)
... .....+..+.+.+.+. ..+....+++|.+|++. |++..++.+...++|..+++.+.+ ++.++.
T Consensus 361 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~ 433 (479)
T PRK10077 361 APG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF 433 (479)
T ss_pred ccc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc
Confidence 011 1222333344444433 34667899999998654 788888877777777777654443 445677
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 022513 194 GWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 194 gw~~~f~i~~~~~~~~~i~~ 213 (296)
+|+..|++.++..+++.+..
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~ 453 (479)
T PRK10077 434 HNGFSYWIYGCMGVLAALFM 453 (479)
T ss_pred cCccHHHHHHHHHHHHHHHH
Confidence 88888877666555554443
No 152
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.16 E-value=2.3e-09 Score=98.80 Aligned_cols=166 Identities=9% Similarity=-0.028 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
|..+..+...++......+...+++.|++ +.|.+..+.+...++..++..+..++.|++.|| +|+|+.+..+.+...+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence 33454455555555665566778888885 589998888888888778888888999999999 7999999888887777
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH-H
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL-F 173 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~-~ 173 (296)
+.+...... +...+++..++.|++.+...+....+..++ ++++ +++..+.+. .
T Consensus 283 ~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~ 336 (382)
T PRK11128 283 RWGLMGSTT-------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSAL 336 (382)
T ss_pred HHHHHHhhh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHH
Confidence 655443321 345667778888888887777777776665 3221 456666654 4
Q ss_pred HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513 174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~ 209 (296)
...+|..++|.++|++.+..|+ ..+...+++.+++
T Consensus 337 ~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 337 AMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 5567878999999999998876 3555555444433
No 153
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.16 E-value=1.1e-09 Score=101.21 Aligned_cols=169 Identities=12% Similarity=0.014 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhc---CCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEM---HFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ 93 (296)
.+..+...++....+.......+.|+++.+ +.+....+...++..+...++.+..|++.|| +|||+.+.++.++..
T Consensus 217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~ 295 (396)
T TIGR00882 217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMS 295 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHH
Confidence 333333444444444445556778887665 4455566777777777888888999999999 799999988888777
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH-HH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF-YL 172 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~-~~ 172 (296)
++..+..... +...++...++.|++.+........+..+.++++. +++..+. ++
T Consensus 296 l~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~ 350 (396)
T TIGR00882 296 VRIIGSSFAT-------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQ 350 (396)
T ss_pred HHHHHHHhcC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHH
Confidence 7665544321 23445666777777765444444455566665443 4555544 55
Q ss_pred HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i 211 (296)
....+|+.+++.+.+++.+..||+.+|.+.+++.++..+
T Consensus 351 ~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 351 FAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 788999999999999999988999999987776655544
No 154
>TIGR00895 2A0115 benzoate transport.
Probab=99.15 E-value=8.2e-10 Score=101.11 Aligned_cols=146 Identities=16% Similarity=0.090 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
.+......++....+++...+++ ++.+++|.+..+.+.......++..++.+++|+++|| +|||+.+....+..+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 329 (398)
T TIGR00895 252 TVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVFAV 329 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHH
Confidence 33344445556666667777777 6677889999999998889999999999999999999 799855444333333322
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
++ .... .+....++..++.|++.+...+...++++|.+|++. |++.+++++....
T Consensus 330 ~~-~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 384 (398)
T TIGR00895 330 LV-GSTL------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIGR 384 (398)
T ss_pred HH-HHHh------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHHH
Confidence 22 2111 123445666778888888888889999999998554 7888899888899
Q ss_pred HHHHHHHhhhhhh
Q 022513 177 LAAMIGVTAIVYV 189 (296)
Q Consensus 177 ~G~~i~~~~~~~l 189 (296)
+|..++|.+.+++
T Consensus 385 ~g~~~g~~~~G~l 397 (398)
T TIGR00895 385 LGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHhHHhc
Confidence 9999999988865
No 155
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.15 E-value=7.4e-10 Score=104.83 Aligned_cols=154 Identities=13% Similarity=0.111 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
.+......++....+++...+++.|+++.+|+++.+++.......++..++.+++|++.|| +|||+.+.++..+..++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~ 335 (485)
T TIGR00711 257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGF 335 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHH
Confidence 4444555666677778888899999999999999999999888889999999999999999 799999988888877776
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
.++..... + ..+...+....++.|+|.|...+.......+.+|+++ +++..+.++...+
T Consensus 336 ~~~~~~~~-~--------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~ 394 (485)
T TIGR00711 336 YWRAFTFT-P--------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNFTRQ 394 (485)
T ss_pred HHHhccCC-C--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHHHHH
Confidence 65542110 1 1223445566778888888777666666667777443 7888888888899
Q ss_pred HHHHHHHhhhhhhccc
Q 022513 177 LAAMIGVTAIVYVFID 192 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~~ 192 (296)
+|+.+|+.+.+.+.++
T Consensus 395 ~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 395 LGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888877554
No 156
>PRK10133 L-fucose transporter; Provisional
Probab=99.14 E-value=1.9e-09 Score=101.45 Aligned_cols=163 Identities=15% Similarity=0.074 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHh-hhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 022513 20 VFVLSALENMGFIANGISMVLYF-KNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVM 98 (296)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~ 98 (296)
.....++.....++...+.+.|+ ++.+|+++.+++.....+.++..++.+++|++.|| +|||+++..+.++..++..+
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~ 341 (438)
T PRK10133 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLI 341 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHH
Confidence 33444555566666677888886 56789999999999999999999999999999999 79999998887776655444
Q ss_pred HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513 99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA 178 (296)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G 178 (296)
..... .. ..+.+..+.|+|.+...|+..+...|.++++. + .++ +... ...+|
T Consensus 342 ~~~~~------------------~~--~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-~----~as--~l~~-~~~~g 393 (438)
T PRK10133 342 SAFAG------------------GH--VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-K----YGS--SFIV-MTIIG 393 (438)
T ss_pred HHHcC------------------Ch--HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-c----cch--hHHh-HHhcc
Confidence 33221 11 12445678899999999999999999887532 1 222 2222 23357
Q ss_pred HHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHH
Q 022513 179 AMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLI 211 (296)
Q Consensus 179 ~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i 211 (296)
+.++|.+.+++.+..| -+.+|.++.++.+....
T Consensus 394 ~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 7788888888888877 67888877666554433
No 157
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.14 E-value=1e-09 Score=104.83 Aligned_cols=152 Identities=11% Similarity=0.011 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
........++....+++...+++.|+++.+|+++.+++.......++..++.+++|++.|| +|||+.+..+.++..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~~ 339 (495)
T PRK14995 261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALSF 339 (495)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHH
Confidence 3344455556666777788889999999999999999999999999999999999999999 799999888888877776
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
+++..... ..+........++.|+|.|...+.......+..|+++ ++...+.++...+
T Consensus 340 ~~l~~~~~----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~ 397 (495)
T PRK14995 340 YGLAMTDF----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMAYE 397 (495)
T ss_pred HHHHHhcC----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHHHH
Confidence 65543211 1122345566788899999888777777778777544 6777788888899
Q ss_pred HHHHHHHhhhhhhcc
Q 022513 177 LAAMIGVTAIVYVFI 191 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~ 191 (296)
+|+.+|+.+.+.+.+
T Consensus 398 lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 398 LGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888777643
No 158
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.14 E-value=2.4e-09 Score=95.71 Aligned_cols=163 Identities=10% Similarity=0.049 Sum_probs=135.7
Q ss_pred HHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 022513 28 NMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKS 107 (296)
Q Consensus 28 ~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~ 107 (296)
|-..-++ ..+..-+++++|+|.+.++.++++-.++..+..+++.+++.| +|-.+.+..+.++..+|.++-...
T Consensus 25 R~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~----- 97 (395)
T COG2807 25 RPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG----- 97 (395)
T ss_pred chhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-----
Confidence 3444333 344455788999999999999999999999999999999999 899999999999999998765432
Q ss_pred CCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 022513 108 LHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIV 187 (296)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~ 187 (296)
....++.+-.+.|.|++......|.++-+-||.+ .+...+.|..+.++|+.+++.+..
T Consensus 98 ---------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lav 155 (395)
T COG2807 98 ---------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAV 155 (395)
T ss_pred ---------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhh
Confidence 2457888999999999999999999999999965 467778888999999999998888
Q ss_pred hhcccc-chhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513 188 YVFIDQ-GWWLGFLISSVATLIGLIALAIGKPF 219 (296)
Q Consensus 188 ~l~~~~-gw~~~f~i~~~~~~~~~i~~~~~~~~ 219 (296)
.+.++. ||+.+..+.+...+++++.+++...|
T Consensus 156 pla~~~~gW~~aL~~WAl~allAl~~WlPq~~r 188 (395)
T COG2807 156 PLAQHSGGWRGALGFWALLALLALLIWLPQALR 188 (395)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 887765 79999988888888888877776433
No 159
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.13 E-value=4.1e-09 Score=100.94 Aligned_cols=171 Identities=18% Similarity=0.071 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
+..++...++.++....+...+|.+.++.+|.++..-|++.+++.++..+|.++.+++.+| +++++.+..+.+++.++.
T Consensus 220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~ 298 (524)
T PF05977_consen 220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALAL 298 (524)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHH
Confidence 4444444444455444555667888899999999999999999999999999999999999 799998888887777766
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
+.+.++. +.+...+..++.|++.....+...+..-+..|++. ||+.++.++....
T Consensus 299 ~~lal~~-------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~ 353 (524)
T PF05977_consen 299 LLLALSP-------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFF 353 (524)
T ss_pred HHHhcch-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHH
Confidence 6555432 34556667778888877777777777777777654 8999999998888
Q ss_pred HHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 022513 177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 213 (296)
.+..+|.++.|.+.+..|-+.++.+.++.++++.++.
T Consensus 354 g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 354 GGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999898888887776665554443
No 160
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.12 E-value=4.7e-09 Score=98.66 Aligned_cols=184 Identities=12% Similarity=0.005 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
..|.+.+..++.-.++.+...++|.|+++.+. .........+..+...+..+++|+++|| +|++|++.++.+..+++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHH
Confidence 46777777777777777787899999988663 2333333444567788899999999999 79999999988877776
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCC------C---------Chhh
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE------N---------DPKG 160 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~------~---------~~~~ 160 (296)
........ |.. ...+...+.+..+.+.++.|.....+..++.+.||+ + ....
T Consensus 330 ~~~~~l~l--p~~-----------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~ 396 (462)
T PRK15034 330 SALLFLTL--PGT-----------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREA 396 (462)
T ss_pred HHHHHHHh--ccc-----------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHH
Confidence 54433321 210 012345555555554455555556666666666663 0 0011
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc-chhHHHHHHHHHHHHHHHHHHh
Q 022513 161 AKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 161 ~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~-gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
|+..+...++......+|+++-|.+.++..+.. ++..+|+...+..+++.++.+.
T Consensus 397 ~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 397 VTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 123466667777778888888887766665543 4777888777777666655444
No 161
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.11 E-value=2.1e-09 Score=97.82 Aligned_cols=153 Identities=14% Similarity=0.003 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcC-chhHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL-SRFATCLVFGTLEV 93 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-GRr~~i~~~~~~~~ 93 (296)
+..+......++....+++...+++.|+++ .|.+..+.+...+...++..++.++.|+++|| + +||+++.++.++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~ 274 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQL 274 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHH
Confidence 334444445555667777888899999875 79999999999999999999999999999999 7 56667777777777
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
++.+.+..... +.. . ....+.|++.|...+...+...+..++++ +++..++..+.
T Consensus 275 ~~~~~~~~~~~------------------~~~-~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~ 329 (355)
T TIGR00896 275 VGLCGLLFAPM------------------HGL-W-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMAQS 329 (355)
T ss_pred HHHHHHHHhhh------------------hHH-H-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHHHH
Confidence 77655543320 111 1 13457788888887776666665544321 25666777777
Q ss_pred HHHHHHHHHHhhhhhhccccc
Q 022513 174 ATTLAAMIGVTAIVYVFIDQG 194 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~g 194 (296)
..++|..++|.+.+++.++.|
T Consensus 330 ~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 330 IGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 778888999999999987764
No 162
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.11 E-value=2.5e-09 Score=101.52 Aligned_cols=174 Identities=14% Similarity=0.060 Sum_probs=124.7
Q ss_pred CchhHHHHHH-HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCc-----hhHHHH
Q 022513 13 GFRACTFVFV-LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLS-----RFATCL 86 (296)
Q Consensus 13 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~G-----Rr~~i~ 86 (296)
+++..+.++. ..+.+.+. +.+...++.++++++|+|+++.+...+...+...+-++ +|+++|| ++ ||+.+.
T Consensus 23 ~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~ 99 (468)
T TIGR00788 23 HPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLV 99 (468)
T ss_pred CcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHH
Confidence 4444443333 56777777 67777888889999999999998888888887777665 9999999 67 777777
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhh
Q 022513 87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS 166 (296)
Q Consensus 87 ~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~ 166 (296)
++.++.. ......++. . ........+.+++.+++.+......-++..|..+ ++++ .++.
T Consensus 100 ~~~~l~~-~~~~~~l~~--~--------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~ 158 (468)
T TIGR00788 100 LSGLLGS-AILYGLLPG--K--------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPS 158 (468)
T ss_pred HHHHHHH-HHHHHhccc--c--------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCC
Confidence 7765542 111111111 0 1122333346788899988888999999999998 3322 2455
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHH
Q 022513 167 YFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGL 210 (296)
Q Consensus 167 ~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~ 210 (296)
..++.|.+.++|..+++.+++++.+..+|+..|++.+++.++..
T Consensus 159 ~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~ 202 (468)
T TIGR00788 159 LVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQL 202 (468)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence 66677777889999999999999988899999998877766553
No 163
>PRK09848 glucuronide transporter; Provisional
Probab=99.10 E-value=1.1e-09 Score=103.07 Aligned_cols=158 Identities=12% Similarity=0.051 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
|.++...+..++...+++......+.|+++.+|.++...+.......++..++.++.++++|| +|+|+++.++.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 334445555666666666666666777888888876655544444455677889999999999 7999999999988888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhh-hhhhhhhHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKG-AKALASYFNFYLF 173 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~-~~~r~~~~~~~~~ 173 (296)
+.+.+.... ..+.+.+++..++.++|.+...+...++.+|..|.++.++ +++.+..++.+.+
T Consensus 307 ~~~~~~~~~-----------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~ 369 (448)
T PRK09848 307 GYLLFFWVS-----------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSF 369 (448)
T ss_pred HHHHHHHcC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHH
Confidence 876655321 1234456667778899999888888899999887543211 1224777788888
Q ss_pred HHHHHHHHHHhhhhhhc
Q 022513 174 ATTLAAMIGVTAIVYVF 190 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~ 190 (296)
...+|..+++.+.+.+.
T Consensus 370 ~~klg~aig~~i~g~~l 386 (448)
T PRK09848 370 TRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899999888776653
No 164
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.08 E-value=8.1e-09 Score=96.57 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCch-hHHHHHHHHHHHHHHH
Q 022513 19 FVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSR-FATCLVFGTLEVLSLV 97 (296)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR-r~~i~~~~~~~~ig~~ 97 (296)
.+....++...++-...++++.|+++++|++..+.+++.+.+.++..++++++|.++|| +|| |+++.++.++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHH
Confidence 34455566666655556899999999999999999999999999999999999999999 665 7777777766655554
Q ss_pred HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCC--ChhhhhhhhhhHHHHHHHH
Q 022513 98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEN--DPKGAKALASYFNFYLFAT 175 (296)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~--~~~~~~~r~~~~~~~~~~~ 175 (296)
+..... +...+++.+.+.+++.+...+...+...+..... +......|.+.+ .
T Consensus 85 ~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~------G 139 (418)
T TIGR00889 85 FAAQVT-------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVM------G 139 (418)
T ss_pred HHHHhc-------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeee------h
Confidence 444321 2455667777777766555444433321111100 000000123333 2
Q ss_pred HHHHHHHHhhhhhhccccchhHHHHHHHHHHHH
Q 022513 176 TLAAMIGVTAIVYVFIDQGWWLGFLISSVATLI 208 (296)
Q Consensus 176 ~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~ 208 (296)
.+|..+++.+++.+.....|. +|++.+++.++
T Consensus 140 ~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~ 171 (418)
T TIGR00889 140 TIGFIAAMWAVSLLDIELSNI-QLYITAGSSAL 171 (418)
T ss_pred hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHH
Confidence 467778888777774333343 45555444443
No 165
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.08 E-value=1.4e-08 Score=94.15 Aligned_cols=166 Identities=13% Similarity=0.060 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
++..+...++...+.++...+.++++.+++|++..+.+.......++..++.++.+++.|| .+|+ .+..+..+..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~~-~l~~~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVKL-ALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchh-HHHHHHHHHHHHH
Confidence 4444444445455555666666555556789999888988888888999999999999999 5544 4333333333332
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
..+.... .+...+.+..++.|++.+...+..++++.+..|++ .++..+.++...+
T Consensus 296 ~~l~~~~------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 350 (394)
T PRK10213 296 LVLTLWG------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQVAVIQ 350 (394)
T ss_pred HHHHHHh------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHHHHHHH
Confidence 2222211 12345566777888888888888888888877643 2233344455678
Q ss_pred HHHHHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513 177 LAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~ 209 (296)
+|..+|+.+++++.+..|++..+...+.+.++.
T Consensus 351 lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 351 LANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 899999999999999888888887766554433
No 166
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.07 E-value=4.3e-09 Score=109.92 Aligned_cols=162 Identities=13% Similarity=-0.011 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChh-hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIA-GASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~-~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
++..++..++.....+....+++.|+.+.+|++.. ..+++.....++..++.+++|+++|| +++++++.++.++..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHH
Confidence 33333344444444556677889999999999998 88888888889999999999999999 79999888877777666
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT 175 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~ 175 (296)
.+++.... +...+++..++.|++.++..+...+++.+..|++. |++.++.+++..
T Consensus 313 ~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~~ 367 (1146)
T PRK08633 313 LFLLPTAP-------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFLQ 367 (1146)
T ss_pred HHHHHHhh-------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHHH
Confidence 55544332 23456667788889988888888899999988765 788888888888
Q ss_pred HHHHHHHHhhhhhhcc-ccchhHHHHHHHH
Q 022513 176 TLAAMIGVTAIVYVFI-DQGWWLGFLISSV 204 (296)
Q Consensus 176 ~~G~~i~~~~~~~l~~-~~gw~~~f~i~~~ 204 (296)
++|..+++.+++.+.. ..++...+.+.+.
T Consensus 368 ~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 368 NVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 8888777766655433 2344445544433
No 167
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.06 E-value=2e-09 Score=101.94 Aligned_cols=147 Identities=17% Similarity=0.135 Sum_probs=113.5
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcc
Q 022513 43 KNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGA 122 (296)
Q Consensus 43 ~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (296)
.+++++...+-+.+.+++.++..++.++++.+.|| +.-.+.+....+...+-.++.... .
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~-------------------~ 132 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAV-------------------H 132 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHH-------------------h
Confidence 35778888889999999999999999999999999 785555554444433222221111 2
Q ss_pred hHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc------cccchh
Q 022513 123 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF------IDQGWW 196 (296)
Q Consensus 123 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~------~~~gw~ 196 (296)
+.+.+++.|++.|+..++.+|+...+++-.|.+++ |+..+++++.+..+|+.+|.+++..+. ...|||
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~ 206 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWR 206 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCce
Confidence 46789999999999999999999999999998665 788888999888999998888876652 346899
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022513 197 LGFLISSVATLIGLIALAI 215 (296)
Q Consensus 197 ~~f~i~~~~~~~~~i~~~~ 215 (296)
+.|.+.+++.++..++.++
T Consensus 207 ~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 207 WLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred eehhHHHHHHHHHHheEEE
Confidence 9999999877665544333
No 168
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.06 E-value=4.4e-09 Score=99.90 Aligned_cols=161 Identities=13% Similarity=0.003 Sum_probs=108.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
|.++.+++..++.....+......+.|.+..++ +....+.+.....++..++.++.++++|| +|||+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence 556666666777776666555555544444444 44455556666667788889999999999 7999999988887776
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChh-hhhhhhhhHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPK-GAKALASYFNFYLF 173 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~-~~~~r~~~~~~~~~ 173 (296)
+.+........+ ..+...+++..++.+++.+...+...++++|..|.++-+ .+++.|..++...+
T Consensus 309 ~~~~~~~~~~~~--------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~ 374 (473)
T PRK10429 309 SCGVLLLMGLAA--------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTM 374 (473)
T ss_pred HHHHHHHHhccC--------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHH
Confidence 665544321111 123345566667788888888888899999997743211 12224567777778
Q ss_pred HHHHHHHHHHhhhhhhcc
Q 022513 174 ATTLAAMIGVTAIVYVFI 191 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~ 191 (296)
...+|..+++.+.+++.+
T Consensus 375 ~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 375 VVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888777644
No 169
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.04 E-value=5.7e-09 Score=93.41 Aligned_cols=176 Identities=12% Similarity=0.032 Sum_probs=120.4
Q ss_pred hHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 022513 34 NGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC 113 (296)
Q Consensus 34 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~ 113 (296)
....+.+-+....|.+..++..+......+..+++...|.++|+ +||||...+...+..+..++-..
T Consensus 96 ~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~------------ 162 (528)
T KOG0253|consen 96 LLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGA------------ 162 (528)
T ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcC------------
Confidence 33344444566778888899998888889999999999999999 79999887766655443332221
Q ss_pred CCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc
Q 022513 114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ 193 (296)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 193 (296)
+.+...+.+.|.+.++|.|+ .|...++-.|..|..+ |....-.. ....+|..+...+.-.+..+.
T Consensus 163 -------spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~ 227 (528)
T KOG0253|consen 163 -------SPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNF 227 (528)
T ss_pred -------CCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 22456788899999999999 7888888889888655 33333222 445667777665555555677
Q ss_pred chhHHHHHHHHH-HHHH-HHHHHhcCCceeecCCCCChhhhhhhhh
Q 022513 194 GWWLGFLISSVA-TLIG-LIALAIGKPFYRIQQPGESPLVRVAQVP 237 (296)
Q Consensus 194 gw~~~f~i~~~~-~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~vl 237 (296)
|||+-....... ++.+ ...+..++|||..-++++....+.++.+
T Consensus 228 gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~ki 273 (528)
T KOG0253|consen 228 GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKI 273 (528)
T ss_pred hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHH
Confidence 999766554432 2222 3345678999988776655555555555
No 170
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.03 E-value=5.7e-09 Score=95.10 Aligned_cols=173 Identities=13% Similarity=0.120 Sum_probs=134.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
+.+..-+...++-+=+..++......|..+++|++..+...+....++.+.++++++|++.|| +|-|+++.++.+++.+
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~ 330 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSI 330 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHH
Confidence 345555556666555666788888899999999999999998888999999999999999999 8999999999888877
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 174 (296)
..+...+.. .. ..+.+.-.+.|+..|+.++..-++.++..|+++ -+.+|++|.+.
T Consensus 331 ~~~~~~~~~------------------~~-~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyalt 385 (438)
T COG2270 331 AALYLIFLE------------------GE-LDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALT 385 (438)
T ss_pred HHHHHHHcc------------------cc-HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhh
Confidence 655444321 11 234445567889999999999999999999765 57899999999
Q ss_pred HHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHH
Q 022513 175 TTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIAL 213 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~ 213 (296)
...++.+||...+.+.+..| -|.++....++..++++++
T Consensus 386 gra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 386 GRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred hhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 99999999999887766543 5666666556555555543
No 171
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.03 E-value=7.4e-09 Score=98.34 Aligned_cols=168 Identities=9% Similarity=0.009 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhh----hcCchhH-HHHHHHHHHHHHHH
Q 022513 23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISD----TYLSRFA-TCLVFGTLEVLSLV 97 (296)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laD----r~~GRr~-~i~~~~~~~~ig~~ 97 (296)
..+..++.+..+..+++.|+++.+|+++..++.+..+..+...+..|+.|+++| | +|||| -++++.+...++.+
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVLF 92 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHHH
Confidence 455566766777788999999999999999999999999999999999999999 5 59955 55566666666654
Q ss_pred HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHH
Q 022513 98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL 177 (296)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (296)
++... |... .......+++..++..++......+..++.+|+.++.+ | |.+..++-....++
T Consensus 93 llf~~---p~~~----------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~--e---R~~l~~~~~~~~~i 154 (473)
T PRK10429 93 LLFSA---HLFE----------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR--E---REQLVPYPRFFASL 154 (473)
T ss_pred HHHcC---CCCC----------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH--H---HHHHHHHHHHHHHH
Confidence 44321 2110 01123344444555667777777888888899876432 3 55666665555666
Q ss_pred HHHHHHhhhhhh----c---cccchhHHHHHHHHHHHHH
Q 022513 178 AAMIGVTAIVYV----F---IDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 178 G~~i~~~~~~~l----~---~~~gw~~~f~i~~~~~~~~ 209 (296)
|+.+.+.+...+ . +..+|+....+.+++.++.
T Consensus 155 g~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~ 193 (473)
T PRK10429 155 AGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVS 193 (473)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 655544333221 1 1235665555555544433
No 172
>PRK10054 putative transporter; Provisional
Probab=99.03 E-value=6.8e-09 Score=96.28 Aligned_cols=171 Identities=15% Similarity=-0.029 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhh--hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKN--EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ 93 (296)
..+......++..+.+.....+.+.|+.. +.+.+....+.+.....+......+..|++.|| .|||+.+..+.++..
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~ 285 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFV 285 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHH
Confidence 34444444555555544444556666643 344555555666666666666667888999999 699999988888777
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
++.+.+.... .+...+.+...+.++|.+...|...+++.+..|++. +++.++...
T Consensus 286 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~~- 340 (395)
T PRK10054 286 IGLVGFIFSG------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQS- 340 (395)
T ss_pred HHHHHHHHcc------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHHH-
Confidence 7766554321 123445566778888888777888888888888654 566666543
Q ss_pred HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
...+|..+||.+++++.++.|....|.+.++...++.++
T Consensus 341 ~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 379 (395)
T PRK10054 341 LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL 379 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence 566899999999999999988888887765555444433
No 173
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.03 E-value=2.6e-09 Score=101.92 Aligned_cols=174 Identities=15% Similarity=0.071 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHhHH---hHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 18 TFVFVLSALENMGFIANGI---SMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
|.+++..|+.+...+|+.. .+...+.++++.+..+.+++.++......+..|+.+.+.|| +|.|.+++.|.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHH
Confidence 4555566666666665543 33455678899999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHH-HHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS-LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
|.++..++.. .+.+++. =++.|+|.|....+....++..|+.+ |+...+....
T Consensus 124 g~~lssF~~~-------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~ 177 (509)
T KOG2504|consen 124 GLLLSSFATS-------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVS 177 (509)
T ss_pred HHHHHHHHhh-------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhc
Confidence 9988777652 3344444 46789999998888888888777632 5666665445
Q ss_pred HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 022513 174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP 218 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~ 218 (296)
+..+|..+=|.+..++.+..|||..+++.+.+.+-.++.-...+|
T Consensus 178 GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 178 GTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred cCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 566666666667778888899999998877766554444444454
No 174
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.03 E-value=4.9e-09 Score=95.39 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHH-HHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFF-GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
.+.+++..++...++++...+++.|+++ +|+++.+.+.+..+.. +...++.+++|+++|| +|||+.+..+.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Confidence 5555556666778888888999999987 8999999888777655 5677899999999999 79999988888777666
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT 175 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~ 175 (296)
..+........... + .+..+...+....++.+++.+...+...+++.|.+|++. |++.++.++...
T Consensus 289 ~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~ 354 (356)
T TIGR00901 289 NAGFVWLASNGHHD-------G-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHhcCccc-------c-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHH
Confidence 55443321100000 0 000123456666778899999999999999999999876 788888766544
Q ss_pred H
Q 022513 176 T 176 (296)
Q Consensus 176 ~ 176 (296)
+
T Consensus 355 ~ 355 (356)
T TIGR00901 355 A 355 (356)
T ss_pred h
Confidence 3
No 175
>PRK09669 putative symporter YagG; Provisional
Probab=99.03 E-value=6.3e-09 Score=97.88 Aligned_cols=170 Identities=9% Similarity=0.047 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc---CchhHH-HHHHHHHHHHHHHH
Q 022513 23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFAT-CLVFGTLEVLSLVM 98 (296)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GRr~~-i~~~~~~~~ig~~~ 98 (296)
..+..+..+..+..+++.|+++++|+++..++.+..+..+...+..|+.|+++||. +||||. ++.+.+...+..++
T Consensus 17 g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l 96 (444)
T PRK09669 17 GDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLL 96 (444)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 34555666666778899999999999999999999999999999999999999982 487554 55566666555544
Q ss_pred HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513 99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA 178 (296)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G 178 (296)
+... |... .......+++..++.+.+......+..++.+|+.++. ++ |.+..++.....++|
T Consensus 97 ~f~~---p~~~----------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~--~e---R~~l~~~r~~~~~~G 158 (444)
T PRK09669 97 TFYT---PDFG----------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP--RE---RHSLQSWRFALSFIG 158 (444)
T ss_pred HHhC---CCCC----------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH--HH---HHHHHHHHHHHHHHH
Confidence 3322 2111 0123444555555556665566677778899987643 23 556666666677777
Q ss_pred HHHHHhhhh----hhc---cccchhHHHHHHHHHHHHHH
Q 022513 179 AMIGVTAIV----YVF---IDQGWWLGFLISSVATLIGL 210 (296)
Q Consensus 179 ~~i~~~~~~----~l~---~~~gw~~~f~i~~~~~~~~~ 210 (296)
+.+++.+.. ++. ...+|+..+.+.+++.++..
T Consensus 159 ~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 159 GLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred HHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 776654432 222 13467777766665544433
No 176
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.02 E-value=9e-09 Score=96.39 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=122.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
|....+++..++..++........+.|.+..+|.+ ...+....+..+...++.++.++++|| +|||+++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHH
Confidence 55666777777777777666677777788888877 455666777888889999999999999 7999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhh-hhhhhhhHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKG-AKALASYFNFYLF 173 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~-~~~r~~~~~~~~~ 173 (296)
+.+++.+... .+.+.+++..++.|++.|...+...++++|..+.++.++ +++.|..++.+.+
T Consensus 303 ~~~~~~~~~~-----------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~ 365 (428)
T PF13347_consen 303 GFLLLFFLGP-----------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSF 365 (428)
T ss_pred HHHHHHHHHh-----------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhh
Confidence 8887766531 245678888899999999999999999999998543221 2235777788888
Q ss_pred HHHHHHHHHHhhhhhhc
Q 022513 174 ATTLAAMIGVTAIVYVF 190 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~ 190 (296)
...+|..+++.+.+.+.
T Consensus 366 ~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 366 FIKIGQGLAGAIVGLLL 382 (428)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 88999998888776653
No 177
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.02 E-value=5.5e-09 Score=97.74 Aligned_cols=187 Identities=14% Similarity=0.062 Sum_probs=130.7
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCch-hHHHH
Q 022513 9 KQKGGFRACTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSR-FATCL 86 (296)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR-r~~i~ 86 (296)
-++.+||.+++..+..++....+....+.+-+|+++ +.+-+.+..|++++...++..++.+..|+.+.| -|+ |+-++
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli 106 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLI 106 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHH
Confidence 356799999999999999888877666777788875 566777788999999999999999999999999 575 66777
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhh
Q 022513 87 VFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALAS 166 (296)
Q Consensus 87 ~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~ 166 (296)
.|+++.++|.++.......+ +.....++++|++.|+|.|.. +..-+|+++....++ |.+
T Consensus 107 ~s~ii~~~g~llY~~l~~~~--------------~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d------R~r 165 (488)
T KOG2325|consen 107 VSFLIAIIGNLLYLALAYVP--------------NGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED------RPR 165 (488)
T ss_pred HHHHHHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc------hHH
Confidence 89999999998874433333 225678999999999998854 667788888655443 445
Q ss_pred hHHHHHHHHHHHHHHHHhh----hhhhccc------c---chhHHHHHHHHHHHHHHHHHHhcC
Q 022513 167 YFNFYLFATTLAAMIGVTA----IVYVFID------Q---GWWLGFLISSVATLIGLIALAIGK 217 (296)
Q Consensus 167 ~~~~~~~~~~~G~~i~~~~----~~~l~~~------~---gw~~~f~i~~~~~~~~~i~~~~~~ 217 (296)
.++....+..+|..+||.+ ++...+. . .+..+-|+.+++.++..+++....
T Consensus 166 A~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f 229 (488)
T KOG2325|consen 166 AFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFF 229 (488)
T ss_pred HHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhe
Confidence 5555444445555555544 3333221 1 133555666665555555444433
No 178
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.01 E-value=2.7e-08 Score=92.35 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=98.8
Q ss_pred HhHHHHhhhhcCCChhhHHHHHHHHH-HHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 022513 36 ISMVLYFKNEMHFDIAGASNTLTNFF-GSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG 114 (296)
Q Consensus 36 ~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~ 114 (296)
.+.+.|+.+++|+++.+.+.+..... ++..++.+++|++.|| +|||+.+.++.++..+..+.+......+
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~~-------- 300 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVTP-------- 300 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 34455677789999998888776544 4578899999999999 7999988777666555543332221111
Q ss_pred CCCcCCcchHHHHHHHH----HHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc
Q 022513 115 KSSCLKGAIAAYFYGSL----YLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF 190 (296)
Q Consensus 115 ~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~ 190 (296)
.+...+.+.. +..+++.+...+....+..+.+|.++ . +.+....++|..++..+++++.
T Consensus 301 -------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~~~~~G~l~ 363 (402)
T PRK11902 301 -------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYVGPTSGYLV 363 (402)
T ss_pred -------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333333 34556666667777777777776332 2 3333334566665566789999
Q ss_pred cccchhHHHHHHHHHHHHHHHH
Q 022513 191 IDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 191 ~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
+..||+..|.+.+++.+++.++
T Consensus 364 ~~~G~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 364 EAYGWPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHhChHHHHHHHHHHHHHHHHH
Confidence 9999999998887777665544
No 179
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.01 E-value=1.9e-08 Score=92.81 Aligned_cols=174 Identities=14% Similarity=0.066 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHH--HHHHHHHHHHHHhHH-HHHhhhcCchhHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNT--LTNFFGSTFLLCLVG-GFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~--~~~~~~~~~~~~l~~-G~laDr~~GRr~~i~~~~~~~~ 93 (296)
...+....+.+.+.+....+.+|.|++ +.|.|.++.+.. .........+.+++. ++.+|| +||||..++.+.+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHH
Confidence 344555667777776666678888876 459999999986 344455565555555 668999 799999766553322
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
... ....+...+. ......+.....+.++..+...+...++..|..++++ ++...+....
T Consensus 81 ~~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~ 140 (390)
T TIGR02718 81 SAC-LASLALVGPD-------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIA 140 (390)
T ss_pred HHH-HHHHHcCCcc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHH
Confidence 211 1111111010 0112233333344445555555555555555544322 3444455556
Q ss_pred HHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
+..+|..+++.+.+++.++.||+..|++.+++.++..+.
T Consensus 141 g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~ 179 (390)
T TIGR02718 141 GVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVC 179 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 668888888888888888899999999888776554444
No 180
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.01 E-value=7.1e-09 Score=108.42 Aligned_cols=181 Identities=10% Similarity=-0.124 Sum_probs=123.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
+.++..++..++..+.++++..+++.|+++.+|.+....+.+.+.+.++..++.++.|+++|+ .++++.+..+.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHH
Confidence 345555555555666666777899999999999999999999999999999999999999998 5766665555554444
Q ss_pred HHHHHHHHhhccCCC-CCCC--CCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513 95 SLVMLTIQAYSKSLH-PPDC--GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 95 g~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
+.+.+..... .... .... ...-+ ...+.+.++++.++.|++.+...+...+++.+.+|++. +|+.++.+
T Consensus 304 ~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~ 375 (1140)
T PRK06814 304 FGLDLAFASS-SVPAEPAQLKSILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAAN 375 (1140)
T ss_pred HHHHHHhccc-ccccccccccchhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHH
Confidence 4333322100 0000 0000 00000 00123456677788899999888889999999999776 78888988
Q ss_pred HHHHHHHHHHHHhhhhhhcc-ccchhHHHHHHHH
Q 022513 172 LFATTLAAMIGVTAIVYVFI-DQGWWLGFLISSV 204 (296)
Q Consensus 172 ~~~~~~G~~i~~~~~~~l~~-~~gw~~~f~i~~~ 204 (296)
+...++|..+++++.+.+.+ ..++...+.+.++
T Consensus 376 ~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 376 NVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 88899999999988887763 3455555554443
No 181
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.00 E-value=1.5e-08 Score=94.13 Aligned_cols=153 Identities=13% Similarity=0.060 Sum_probs=102.0
Q ss_pred HhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 022513 33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD 112 (296)
Q Consensus 33 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~ 112 (296)
....++|.|+++..+ ++.+.+...+...++...+....+++.||+++.++.+..+.++..++.+++....
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------- 295 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------- 295 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence 344577888877655 5566777666655555444444455555436767777777777777665554332
Q ss_pred CCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc
Q 022513 113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID 192 (296)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~ 192 (296)
+...+.+...+.++|.+...+...++..|..|+++ |++.++.++...++|..+||.+.+++.++
T Consensus 296 ----------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 296 ----------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 22344555566777777777888899999998665 78888888889999999999999998775
Q ss_pred c---c-hhHHHHHHHHHHHHHHH
Q 022513 193 Q---G-WWLGFLISSVATLIGLI 211 (296)
Q Consensus 193 ~---g-w~~~f~i~~~~~~~~~i 211 (296)
. + ....+.+.+++.++..+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~ 382 (400)
T PRK11646 360 GKALNQPELPWMMLGIIGLITLL 382 (400)
T ss_pred HhhcCCcchHHHHHHHHHHHHHH
Confidence 3 2 23455554444444433
No 182
>PRK11462 putative transporter; Provisional
Probab=99.00 E-value=2.4e-08 Score=94.61 Aligned_cols=170 Identities=13% Similarity=0.055 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhh---cCchhHHHH-HHHHHHHHHHHH
Q 022513 23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDT---YLSRFATCL-VFGTLEVLSLVM 98 (296)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr---~~GRr~~i~-~~~~~~~ig~~~ 98 (296)
..+..+..+..+..++..|+++.+|+++..++.+..+.-+.-.+.-|+.|+++|| .+||||..+ ++.+...++.++
T Consensus 17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l 96 (460)
T PRK11462 17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL 96 (460)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence 4555566666677789999999999999999999999999999999999999997 369877655 555666666555
Q ss_pred HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513 99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA 178 (296)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G 178 (296)
+... |... .......+++.-++..++......+..++.+|+.++.+ | |.+..++.....++|
T Consensus 97 lf~~---p~~s----------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~l~s~r~~~~~iG 158 (460)
T PRK11462 97 AYST---PDLS----------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RISLQSWRFVLATAG 158 (460)
T ss_pred HHhC---CCCC----------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHHHHHHHHHHHHHH
Confidence 4322 2111 01223344555556677777777788899999887533 3 677777777777887
Q ss_pred HHHHHhhhhhhcc-------ccchhHHHHHHHHHHHHHH
Q 022513 179 AMIGVTAIVYVFI-------DQGWWLGFLISSVATLIGL 210 (296)
Q Consensus 179 ~~i~~~~~~~l~~-------~~gw~~~f~i~~~~~~~~~ 210 (296)
..+++.+...+.. ..+|+....+.+++.++..
T Consensus 159 ~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 159 GMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 7776655433221 1356655555444443333
No 183
>TIGR00898 2A0119 cation transport protein.
Probab=98.98 E-value=9.8e-09 Score=97.96 Aligned_cols=127 Identities=12% Similarity=-0.030 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcC
Q 022513 59 NFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGC 138 (296)
Q Consensus 59 ~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~ 138 (296)
...+....+.++++++.|| +|||+++.++.++..++.+++..... .......+..++.+++.
T Consensus 363 ~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~ 424 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV-----------------DLYFLRTALAVLGKFGI 424 (505)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC-----------------CchHHHHHHHHHHHHHH
Confidence 3455667788899999999 79999999888877776655443321 11122333344555566
Q ss_pred cCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513 139 GGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 139 g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i 211 (296)
++..+....+.+|.+|++. |++..++.+....+|+.++|.+.+ +. ..++..++.+.+++.+++.+
T Consensus 425 ~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~ 489 (505)
T TIGR00898 425 TSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGI 489 (505)
T ss_pred HHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHH
Confidence 6666778889999999654 788888888889999999998887 43 34455666665555544433
No 184
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.95 E-value=7.3e-09 Score=93.28 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHhhhhcCCC-hhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 022513 20 VFVLSALENMGFIANGISMVLYFKNEMHFD-IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVM 98 (296)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s-~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~ 98 (296)
.+...+.....+++...+++.|+.+.+|.+ ..+.+...++..+...++.++.|+++|| +|+++...+......++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 289 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALG 289 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHH
Confidence 344444555566778889999999999999 7888888899899999999999999999 79988887777766666555
Q ss_pred HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513 99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA 178 (296)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G 178 (296)
+..... ..+....++..++.|++.+...+....+..|.+|+++ +++..+.++...++|
T Consensus 290 ~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~~ 347 (352)
T PF07690_consen 290 LLLLPF----------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSIGSLG 347 (352)
T ss_dssp HCCSHH----------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHH
Confidence 443321 1133456667788899999899999999999998654 789999999999999
Q ss_pred HHHHH
Q 022513 179 AMIGV 183 (296)
Q Consensus 179 ~~i~~ 183 (296)
+.+||
T Consensus 348 ~~igP 352 (352)
T PF07690_consen 348 GIIGP 352 (352)
T ss_dssp HHHHH
T ss_pred HHHCC
Confidence 99886
No 185
>PRK11043 putative transporter; Provisional
Probab=98.94 E-value=1.5e-07 Score=87.10 Aligned_cols=145 Identities=6% Similarity=-0.086 Sum_probs=96.7
Q ss_pred HHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 022513 26 LENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYS 105 (296)
Q Consensus 26 ~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~ 105 (296)
+....++....+++.|++ ++|++..+.+.......++..++.++++++.|| +|||+.+....+...++.+.+......
T Consensus 214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (401)
T PRK11043 214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLL 291 (401)
T ss_pred HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445556667777775 579999888887777777888899999999999 799997766655555444333322111
Q ss_pred cCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhh
Q 022513 106 KSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTA 185 (296)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~ 185 (296)
. ..+...+.+...+.+++.+...+.......|..|++ +++..++++.....++..++.+
T Consensus 292 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~g~~~~~~~~~~~~~~~~ 350 (401)
T PRK11043 292 S--------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQA-------TGKAAALQNTLQLGLCFLASLL 350 (401)
T ss_pred c--------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCccc-------ChHHHHHHHHHHHHHHHHHHHH
Confidence 1 012334445556677888877777777777776632 5777777776667677777777
Q ss_pred hhhhcccc
Q 022513 186 IVYVFIDQ 193 (296)
Q Consensus 186 ~~~l~~~~ 193 (296)
.+.+.+..
T Consensus 351 ~g~l~~~~ 358 (401)
T PRK11043 351 VSALISTP 358 (401)
T ss_pred HHHccCCC
Confidence 77776543
No 186
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.92 E-value=1.5e-07 Score=86.09 Aligned_cols=144 Identities=6% Similarity=-0.063 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 022513 21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLT 100 (296)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~ 100 (296)
....++...+.+....+.+.++.+.+|+++.+.+.......++..++.+++|+++|| +|||+++..+..+..+..+.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~ 278 (377)
T PRK11102 200 MLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGIWLV 278 (377)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555556666778888899999999999999999999999999999999 7999999888776544333332
Q ss_pred HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH-HHHHHH
Q 022513 101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF-ATTLAA 179 (296)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~-~~~~G~ 179 (296)
.....+ .+...+.++..+.+.+.+...+.......|..|+ . +++..+.+.. ...+|.
T Consensus 279 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~~~g~ 336 (377)
T PRK11102 279 VSALLD---------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH-M------AGTASSLAGTLRFGIGA 336 (377)
T ss_pred HHHHHh---------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc-c------chHHHHHHHHHHHHHHH
Confidence 221100 1122333344444444444555555666676652 2 4555555433 234566
Q ss_pred HHHHhhhh
Q 022513 180 MIGVTAIV 187 (296)
Q Consensus 180 ~i~~~~~~ 187 (296)
.+++.+..
T Consensus 337 ~~g~~~~~ 344 (377)
T PRK11102 337 IVGALLSL 344 (377)
T ss_pred HHHHHHHh
Confidence 66665443
No 187
>PRK09848 glucuronide transporter; Provisional
Probab=98.92 E-value=6.9e-08 Score=90.92 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc---CchhHHH-HHHHHHHHHHHHH
Q 022513 23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFATC-LVFGTLEVLSLVM 98 (296)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GRr~~i-~~~~~~~~ig~~~ 98 (296)
..+..+..+..+..++..|+++.+|++..+++.+..+..+...+..++.|+++||. +||||.. .++.+...+..++
T Consensus 16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~ 95 (448)
T PRK09848 16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL 95 (448)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence 45566777666777888999999999999999999999999999999999999992 3777755 4555544443333
Q ss_pred HHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH-----
Q 022513 99 LTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF----- 173 (296)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~----- 173 (296)
+.... .... ........++...+.+++.+...++..++..|+.++.+ + |....++..+
T Consensus 96 ~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---r~~~~~~r~~~~~~~ 158 (448)
T PRK09848 96 VFWVP--TDWS----------HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S---RARLGAARGIAASLT 158 (448)
T ss_pred HHhCc--CCCC----------cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H---HHHHHHHHHHHHHHH
Confidence 22111 0000 01122334445566777788888777787777766432 3 3344333332
Q ss_pred HHHHHHHHHHhhhhh
Q 022513 174 ATTLAAMIGVTAIVY 188 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~ 188 (296)
..+++..++|.+.+.
T Consensus 159 ~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 159 FVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHHHHHHHh
Confidence 234555566665543
No 188
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.92 E-value=3.6e-08 Score=85.54 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=113.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH-HH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG-TL 91 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~-~~ 91 (296)
...+.|.+..+.++..++.+=..+.-+.++++.+|+|+..++.+.+...+...+..++.|.++|+ .||+-..+.+. +.
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~~~ 340 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASACIL 340 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHHHH
Confidence 45668888888888777777677777899999999999999999999888999999999999999 59987765544 44
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
.+++...+.++.. .=+++..+.|+.......+..+.++...|+++ .|+.++..
T Consensus 341 tl~~H~~l~Ft~l---------------------sPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~ 393 (459)
T KOG4686|consen 341 TLLGHSGLFFTFL---------------------SPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFI 393 (459)
T ss_pred HHHHhhhHHhhhc---------------------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHH
Confidence 4555555444321 12345556666554433333344444555444 79999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccc
Q 022513 172 LFATTLAAMIGVTAIVYVFIDQG 194 (296)
Q Consensus 172 ~~~~~~G~~i~~~~~~~l~~~~g 194 (296)
|-..|+|-.+.|++++.+.++-|
T Consensus 394 qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 394 QSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHHhhhhhHHhhhhheeecCCC
Confidence 99999999999999999987643
No 189
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.91 E-value=1e-08 Score=96.09 Aligned_cols=177 Identities=13% Similarity=0.047 Sum_probs=120.1
Q ss_pred HHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhh----hcCchhHHH-HHHHHHHHHHHHHH
Q 022513 25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISD----TYLSRFATC-LVFGTLEVLSLVML 99 (296)
Q Consensus 25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laD----r~~GRr~~i-~~~~~~~~ig~~~~ 99 (296)
+..+........++..|+++.+|+++...+.+..+..+...+..|+.|.++| | +||||-. +++.+...++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence 4444454555668889999999999999999999999999999999999999 7 7987754 46777777776665
Q ss_pred HHHhhcc-CCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 022513 100 TIQAYSK-SLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLA 178 (296)
Q Consensus 100 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G 178 (296)
.... | ... .......+.+..++..++......+..++++|..++.+ + |.+..++-.....+|
T Consensus 90 f~~~--p~~~~----------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--~---R~~l~~~~~~~~~~g 152 (428)
T PF13347_consen 90 FSPP--PAGLS----------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--E---RTRLSSWRMIFSMIG 152 (428)
T ss_pred hccc--cchhh----------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh--h---hhhHHHHHHHHHHHH
Confidence 5321 1 000 01223445666666788888888888999999988543 3 566666666666777
Q ss_pred HHHHHhhhhhhc----cc---cchhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513 179 AMIGVTAIVYVF----ID---QGWWLGFLISSVATLIGLIALAIGKPF 219 (296)
Q Consensus 179 ~~i~~~~~~~l~----~~---~gw~~~f~i~~~~~~~~~i~~~~~~~~ 219 (296)
..+...+.+.+. +. .+|++...+.+++.++..++.....|+
T Consensus 153 ~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 153 SLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 755444444332 21 268877777766666555554444444
No 190
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.91 E-value=9.1e-08 Score=88.03 Aligned_cols=164 Identities=9% Similarity=-0.048 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh---HHHHH-HHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF---ATCLV-FGT 90 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr---~~i~~-~~~ 90 (296)
|..+.+....++....+|++..++|.|+++ .|++.. ++....+.... +.+..++++|| +.|| +.... ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~---g~~g~~~~~d~-~~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILA---GLIGVAVIPDR-VARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHH---HHHHHHHhhHH-hhhhhhHHHHHHHHHH
Confidence 446677777888888999999999999965 678764 44444443433 33445788888 5543 33222 232
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513 91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF 170 (296)
Q Consensus 91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~ 170 (296)
+..+....+.... +....++...+.+++.....+...++.+|.+|++. |++..++
T Consensus 266 ~~a~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G~ 320 (368)
T TIGR00903 266 LIAAFFLALAFEL-------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAGA 320 (368)
T ss_pred HHHHHHHHHHHcc-------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccch
Confidence 2222222221111 11223334445666666666778889999999765 8999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Q 022513 171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI 211 (296)
Q Consensus 171 ~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i 211 (296)
.+...++|+..+|.+.+.+.. +.+..|.+.++..+++.+
T Consensus 321 ~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~ 359 (368)
T TIGR00903 321 IGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFA 359 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 999999999999988876653 445566555555444433
No 191
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.87 E-value=2.4e-08 Score=95.36 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=133.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
+..+.......+..++++....+++.|.+ ..+++..+++..+++..+...++.++.|+++|+ ...++..+....+...
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHH
Confidence 44555555666777787777788888887 889999999999999999999999999999999 4633433333333333
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 174 (296)
|...+.... ..++..+...-.+.|+..|...+..+..+.|..+.++ ....+++....
T Consensus 376 gl~~~~~p~-----------------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~ 432 (509)
T KOG2504|consen 376 GLARLFLPF-----------------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLF 432 (509)
T ss_pred HHHHHHHHH-----------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHH
Confidence 333222211 1235667777788999999888888788889888654 67788888889
Q ss_pred HHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhcC
Q 022513 175 TTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIALAIGK 217 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~~~ 217 (296)
..++..+||.+.+++.+..+ |...|..+++.++++.+.+++..
T Consensus 433 ~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 433 QGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999988776 88999999888887776655544
No 192
>PRK09669 putative symporter YagG; Provisional
Probab=98.87 E-value=4.2e-08 Score=92.32 Aligned_cols=158 Identities=11% Similarity=0.053 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
.+.+++..++...+.. +...+..|..+ .++. ....+.......+...++.+++++++|| +|||+.+..+.++..++
T Consensus 231 ~~~l~~~~~~~~~~~~-~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~ 307 (444)
T PRK09669 231 WRIMFIFNVVLLTAVV-TRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVIL 307 (444)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence 3444444444434432 22233344433 3332 3333344445556777888999999999 79999998877665543
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhh-hhhhhhhHHHHHHH
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKG-AKALASYFNFYLFA 174 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~-~~~r~~~~~~~~~~ 174 (296)
.+..... + .++...+++..++.|++.+...+...++++|..|.++.+. +++.+..++.+.+.
T Consensus 308 ~~~~~~~---~--------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~ 370 (444)
T PRK09669 308 SALIFFI---P--------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFA 370 (444)
T ss_pred HHHHHHh---C--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHH
Confidence 3322221 1 1234556677788999999999999999999987433211 12246677788888
Q ss_pred HHHHHHHHHhhhhhhccccc
Q 022513 175 TTLAAMIGVTAIVYVFIDQG 194 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~g 194 (296)
..+|..+|+.+++++.+..|
T Consensus 371 ~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 371 IKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 89999999888877654333
No 193
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.87 E-value=6.6e-08 Score=91.31 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh-----HHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF-----ATCLVFG 89 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr-----~~i~~~~ 89 (296)
+++|.+.+..++++.+++.+..++|.|+.+.+|++..+.++..++-.+...+..+++|.++|| +-+| .+.-+..
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~-l~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDR-LTFRILSETTVRKIFN 336 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhccCchHhHHHHHH
Confidence 567788889999999999999999999999999999999999999999999999999999999 4331 1111222
Q ss_pred HHHHHHHHHHHHH-hhccCCCCCCCCCCCcCCc-chHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513 90 TLEVLSLVMLTIQ-AYSKSLHPPDCGKSSCLKG-AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASY 167 (296)
Q Consensus 90 ~~~~ig~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~ 167 (296)
.+...+..++... ...+ |.+. .....+.++..+.|+..++...+ ..|..|. ..+..
T Consensus 337 ~i~~~~~ai~l~~l~~~~-----------~~~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~apq-------~a~~l 394 (466)
T KOG2532|consen 337 TIAFGGPAVFLLVLAFTS-----------DEHRLLAVILLTIAIGLSGFNISGFYKN----HQDIAPQ-------HAGFV 394 (466)
T ss_pred hHHHHHHHHHHHeeeecC-----------CCcchHHHHHHHHHHHHcccchhhhHhh----hhhccch-------HHHHH
Confidence 2222222111111 1111 0111 11222222333333333333222 2222332 25777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccc---cchhHHHHHHHHHHHHHHHHHHh
Q 022513 168 FNFYLFATTLAAMIGVTAIVYVFID---QGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 168 ~~~~~~~~~~G~~i~~~~~~~l~~~---~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
++..+...++.++++|.+++.+..+ .+|+..|++.+++.+++.+.+..
T Consensus 395 ~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 395 MGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred HHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 8888889999999999999988732 47999999999988877665543
No 194
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.86 E-value=2.3e-07 Score=86.03 Aligned_cols=153 Identities=9% Similarity=-0.064 Sum_probs=105.3
Q ss_pred HHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 022513 30 GFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLH 109 (296)
Q Consensus 30 ~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~ 109 (296)
........++.|+++.+|.++.+.+.......++..++.++.+++.|| .++++.+..+..+ .+..+.+...
T Consensus 220 ~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~~~~~~~~~------- 290 (393)
T PRK11195 220 AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GLVVLLMALQ------- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHH-------
Confidence 334445566678888899999999999999999999999999999999 6998888776533 2222222211
Q ss_pred CCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 022513 110 PPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV 189 (296)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l 189 (296)
.+.....+..++.|++.+...++..+.+.|..|++. .+++.++..+...++|..++..+.+.+
T Consensus 291 ------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 291 ------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred ------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 123445566677888888877777777777543321 157788888888999999888777755
Q ss_pred ccccchhHHHHHHHHHHHHH
Q 022513 190 FIDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 190 ~~~~gw~~~f~i~~~~~~~~ 209 (296)
+..|-+..+.+.+...++.
T Consensus 354 -~~~~~~~~~~~~~~~~~~~ 372 (393)
T PRK11195 354 -VKLGVPVVAVIVGFGLLVA 372 (393)
T ss_pred -HHcCCCHHHHHHHHHHHHH
Confidence 4455555555544443333
No 195
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.82 E-value=3.3e-07 Score=86.32 Aligned_cols=190 Identities=16% Similarity=0.041 Sum_probs=114.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513 12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL 91 (296)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~ 91 (296)
.+++.+...+...++..+.-.-...+..+.+-++-|++..++.+.+........+..+++.++-|| +|||+.++++..+
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~ 344 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSL 344 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHH
Confidence 456666666666776666432222333344455678999999888888899999999999999999 7999999999998
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHH--HHHHHHHHHHHcCcC-cccchhhhhcccCCCCChhhhhhhhhhH
Q 022513 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAA--YFYGSLYLYSLGCGG-NRGTLPALGAGQFDENDPKGAKALASYF 168 (296)
Q Consensus 92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~g~g~-~~~~~~~~~~e~~~~~~~~~~~~r~~~~ 168 (296)
+.+..+++......... ...+. ..+++.++..++.+. ..|...-+.+|++|... |....
T Consensus 345 ~~~~~~~~~~~~~l~~~------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~ 406 (485)
T KOG0569|consen 345 MAVALLLMSIALFLSNS------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQ 406 (485)
T ss_pred HHHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHH
Confidence 88877777665432110 00111 123333333333332 23556677889999766 55555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCcee
Q 022513 169 NFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYR 221 (296)
Q Consensus 169 ~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~ 221 (296)
++-.....+..++-......+.+..|- ..|.+-++..++..+..+...|+.+
T Consensus 407 s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 407 SVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 554433333333333333444444443 4555545555555555555555544
No 196
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.82 E-value=4.3e-07 Score=83.76 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=57.0
Q ss_pred HhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 022513 33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQ 102 (296)
Q Consensus 33 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~ 102 (296)
....+.+.|+.+++|++..+.+.......++..++.++.+++.|| +|||+.+.++..+..++.+.+...
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677888899999888888888888899999999999999 799999999888887777666554
No 197
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.82 E-value=6.4e-08 Score=86.94 Aligned_cols=149 Identities=14% Similarity=0.100 Sum_probs=98.9
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcch
Q 022513 44 NEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAI 123 (296)
Q Consensus 44 ~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (296)
+++|++..+.+.+.....+...+..++.|.++|| +|||+..+..++++.+..+.-. ..+
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~--------------------~~~ 120 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKH--------------------SSN 120 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHh--------------------ccc
Confidence 5789999999888888788888888999999999 6999999999999988765322 124
Q ss_pred HHHHHHHHHHHHHcCcCcccchhhhhcccCCCCC-hhhhhhhhhhHHHHH-HHHHHHHHHHHhhhhhhccccch--hHHH
Q 022513 124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEND-PKGAKALASYFNFYL-FATTLAAMIGVTAIVYVFIDQGW--WLGF 199 (296)
Q Consensus 124 ~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~-~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~gw--~~~f 199 (296)
...++++|++.|++.....++.-+++......+. +++ ..+..++... +...+-+..+.+++.++.+..+. ..+|
T Consensus 121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF 198 (354)
T PF05631_consen 121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPF 198 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchH
Confidence 6789999999999998887777666543332221 111 1333333222 11122223333445555555443 6788
Q ss_pred HHHHHHHHHHHHHHHh
Q 022513 200 LISSVATLIGLIALAI 215 (296)
Q Consensus 200 ~i~~~~~~~~~i~~~~ 215 (296)
.....+.+++.++...
T Consensus 199 ~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 199 DAAIVLLAVAAVLILK 214 (354)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8877777666655443
No 198
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.81 E-value=6e-08 Score=88.22 Aligned_cols=139 Identities=15% Similarity=0.054 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
.+.+....++.....+++..+++.|+++.+|++..+++.......+...++.+++|+++|| +|||+.+..+......+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGA 305 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHH
Confidence 3444444444455566778889999999999999999988888888899999999999999 799988877776666555
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
.++..... + ..+...+.+...+.+++.|...+...++.+|.+|. + +++..+..+...+
T Consensus 306 ~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~ 363 (366)
T TIGR00886 306 FLVVLGLV-S--------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAVSGLVGAIGN 363 (366)
T ss_pred HHHHhcCC-C--------------cchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccHHHHHHHhcc
Confidence 54443210 0 00233444445555556666666666777787763 2 6777777665555
Q ss_pred HH
Q 022513 177 LA 178 (296)
Q Consensus 177 ~G 178 (296)
+|
T Consensus 364 ~g 365 (366)
T TIGR00886 364 LG 365 (366)
T ss_pred CC
Confidence 54
No 199
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.81 E-value=5.3e-07 Score=80.87 Aligned_cols=165 Identities=13% Similarity=0.008 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
+..|.+.+-.-+++..+|.+..++|.++. +.|+|..+++..++...+......+..-.+++|.-.+|+.....+..+.+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 34566666677789999999999999876 56999999999999999999999999999999855788888888888888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA 174 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 174 (296)
|.+.+.+... +. .+...+++|+|.|+..+....++.+-.++.+ + .++..++.+-.
T Consensus 287 G~~G~~~~P~------------------~~--~~lw~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~LSgmaQg~ 341 (395)
T COG2807 287 GLVGLLLAPG------------------QL--PILWALLLGLGQGGAFPLALTLILLRSSDAA--I---AAALSGMAQGV 341 (395)
T ss_pred HHHHHHHhhh------------------hH--HHHHHHHHhCccchHHHHHHHHHHhhcCChH--H---HHHHHHHhhhh
Confidence 8887765431 11 1222478999999999999999988776432 2 34555555545
Q ss_pred HHHHHHHHHhhhhhhcccc-chhHHHHHHHHH
Q 022513 175 TTLAAMIGVTAIVYVFIDQ-GWWLGFLISSVA 205 (296)
Q Consensus 175 ~~~G~~i~~~~~~~l~~~~-gw~~~f~i~~~~ 205 (296)
..+=+.+||.+.|++.|.. +|+..+...+..
T Consensus 342 GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~ 373 (395)
T COG2807 342 GYLLAAFGPWLFGFLHDATGSWSAPLVLLALA 373 (395)
T ss_pred hHHHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence 5555667899999998865 587666544443
No 200
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.78 E-value=2.3e-07 Score=86.53 Aligned_cols=163 Identities=8% Similarity=-0.048 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhh-cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNE-MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
.+..+...++......+..++++.|+++. .+.+...++...+.+..+..++.+++++++|| +++|+++.++.++.++.
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHH
Confidence 34444455554445556778889998653 35555555556666667888999999999999 79999988887777766
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT 175 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~ 175 (296)
.++..... +. ......++.|+..+...|++.+...+..+++.. .++. ... +.
T Consensus 313 ~ll~~~~~------------------~~--~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~-----~~s~--~l~-~~ 364 (410)
T TIGR00885 313 CLGSIFAG------------------GH--VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTK-----YGAA--GLV-MA 364 (410)
T ss_pred HHHHHHcC------------------Ch--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hhHH--HHH-HH
Confidence 55544321 11 234556677788888889999999998875431 1121 112 23
Q ss_pred HHHHHHHHhhhhhhcccc------chhHHHHHHHHHHHH
Q 022513 176 TLAAMIGVTAIVYVFIDQ------GWWLGFLISSVATLI 208 (296)
Q Consensus 176 ~~G~~i~~~~~~~l~~~~------gw~~~f~i~~~~~~~ 208 (296)
.+|+.+.|.+.+++.|.. +.+.+|.++..+.+.
T Consensus 365 ~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 365 IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 489999999999999853 477888887776543
No 201
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.76 E-value=3.9e-07 Score=85.21 Aligned_cols=157 Identities=13% Similarity=0.044 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
|+....++..++...++....+.+..|.+-.+|.+.............+..++.++...+++| +|||+++.++.++.++
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i 314 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAV 314 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHH
Confidence 445555555666666655555666677777788887777777777777777779999999999 7999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhh-hhhhHHHHHH
Q 022513 95 SLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA-LASYFNFYLF 173 (296)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~-r~~~~~~~~~ 173 (296)
+.+++.+.. ..+..++++..++.++|.+...+...++++|..+-.+-++-++ -|..++.+.+
T Consensus 315 ~~~~~~f~~-----------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF 377 (467)
T COG2211 315 GYLLLYFTP-----------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTF 377 (467)
T ss_pred HHHHHHhhc-----------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHH
Confidence 998887753 1346778888899999999999999999999877432222222 2455555555
Q ss_pred HHHHHHHHHHhhhhhh
Q 022513 174 ATTLAAMIGVTAIVYV 189 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l 189 (296)
..=+|..++..+.+++
T Consensus 378 ~~K~g~ala~~~~g~~ 393 (467)
T COG2211 378 FRKLGLALAGFIPGWI 393 (467)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555444443
No 202
>PRK11462 putative transporter; Provisional
Probab=98.71 E-value=7.8e-07 Score=84.28 Aligned_cols=154 Identities=12% Similarity=0.050 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
...++...++...+..........|.+..+|.+ ...+.+...+.+++.++.+++++++|| +|||+++..+..+..+..
T Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~ 307 (460)
T PRK11462 230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVIS 307 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 333333444444443333333333333334433 334455667777888899999999999 799988765554443333
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhh-hhhHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKAL-ASYFNFYLFAT 175 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r-~~~~~~~~~~~ 175 (296)
++..+. + ..+...+++..++.|++.++..+...++++|..+.++-++.+++ +..++.+.+..
T Consensus 308 ~~~~~~---~--------------~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~ 370 (460)
T PRK11462 308 LAMFFV---P--------------MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVL 370 (460)
T ss_pred HHHHHh---c--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHH
Confidence 322221 1 01122334445566777776666667888887764321122222 44456655677
Q ss_pred HHHHHHHHhhhhhh
Q 022513 176 TLAAMIGVTAIVYV 189 (296)
Q Consensus 176 ~~G~~i~~~~~~~l 189 (296)
.+|..+++.+++++
T Consensus 371 Klg~alg~~i~g~i 384 (460)
T PRK11462 371 KLGLAFGGALIGWM 384 (460)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666554
No 203
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.66 E-value=5.8e-07 Score=80.81 Aligned_cols=147 Identities=12% Similarity=0.040 Sum_probs=96.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhHHHHhhh--hcCC-----------------ChhhHHHHHHHHHHHHHHHHhHHHHH
Q 022513 14 FRACTFVFVLSALENMGFIANGISMVLYFKN--EMHF-----------------DIAGASNTLTNFFGSTFLLCLVGGFI 74 (296)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~l~~-----------------s~~~a~~~~~~~~~~~~~~~l~~G~l 74 (296)
+|.-+.+-.+.|...+.+||..-......+. ..+. +...--.-........+-|.++.+++
T Consensus 325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i 404 (528)
T KOG0253|consen 325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI 404 (528)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence 3444555567778888999876433322221 1111 11111111223455667889999999
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCC
Q 022513 75 SDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFD 154 (296)
Q Consensus 75 aDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~ 154 (296)
-|| +|||+++..+.+++.+..+++..+.. ......+++.+|+++..+ ..+.+.|..|.+|
T Consensus 405 ver-lGRKkTMal~l~~f~iflfll~~c~~---------------rn~~tvllf~arafisg~----fqvaYvYtPEVyP 464 (528)
T KOG0253|consen 405 VER-LGRKKTMALSLILFGIFLFLLTTCKT---------------RNAYTVLLFTARAFISGA----FQVAYVYTPEVYP 464 (528)
T ss_pred HHH-hcchhHHHHHHHHHHHHHHHHHHhcC---------------cchhHHHHHHHHHHHhch----heEEEEecCcccc
Confidence 999 89999999999888877666554421 012235666777776544 3556788899999
Q ss_pred CCChhhhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 022513 155 ENDPKGAKALASYFNFYLFATTLAAMIGVTAI 186 (296)
Q Consensus 155 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~ 186 (296)
+.. |+++.+.-.-+..+|+++.|.++
T Consensus 465 Tav------RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 465 TAV------RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred hhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence 876 67777777777899999999887
No 204
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.65 E-value=3e-06 Score=78.22 Aligned_cols=138 Identities=7% Similarity=-0.091 Sum_probs=91.3
Q ss_pred HHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 022513 35 GISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCG 114 (296)
Q Consensus 35 ~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~ 114 (296)
....+.|+++.+|.++.+.+.......++..++.++.+++.|| +||+... +.....++.+.........
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-------- 295 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQ--SVICCLLAGLLMWIPGWFG-------- 295 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHhc--------
Confidence 3455667888899999888887777777778888888888888 5743322 2222222322222111100
Q ss_pred CCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc
Q 022513 115 KSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG 194 (296)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~g 194 (296)
..+...+..+.++.++|.+...+...++..|.+|++ +++..+..+...++|+.+++.+.+++.....
T Consensus 296 ------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 362 (394)
T PRK11652 296 ------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYL-------AGTAGALLGGLQNIGSGLAALLSAMLPQTGQ 362 (394)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence 012344566678888888888888888888888732 4666677777788999999988888765544
Q ss_pred hh
Q 022513 195 WW 196 (296)
Q Consensus 195 w~ 196 (296)
+.
T Consensus 363 ~~ 364 (394)
T PRK11652 363 FS 364 (394)
T ss_pred HH
Confidence 43
No 205
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.64 E-value=8e-07 Score=82.17 Aligned_cols=175 Identities=13% Similarity=0.023 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH-
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV- 93 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~- 93 (296)
+..+......+..-+.+-...++.+.+++++.|+|.++.|.+.++..+...+.+++.|.++|| +|.||-++....+..
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHH
Confidence 345555555555555544566889999999999999999999999999999999999999999 797666544433322
Q ss_pred -HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 94 -LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 94 -ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
.+....... .|.++ .-+.++..+.++..+....+..+. .|.+-++. .++.+-=++-.-
T Consensus 86 l~~pff~~v~--~pll~---------------~n~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~---sr~~~feYG~~R 144 (412)
T PF01306_consen 86 LFGPFFIYVF--GPLLQ---------------SNFWLGAIIGGIYLGLVFNAGVPL-SEAYAERV---SRRNGFEYGRAR 144 (412)
T ss_dssp TCHHHHHHTH--HHHHH---------------TT-HHHHHHTTTTTTTTTTTHHHH-HHHHHHHH---HHHHSS-HHHHH
T ss_pred HHHHHHHHHH--HHHHH---------------HHHHHHHHHHHHHHHHHHcccchH-HHHHHHHH---HHHhcCCcchHH
Confidence 232222111 01100 012333344444444333322221 24433111 011111122223
Q ss_pred HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
....+|..++..++|++.+ .+....|++..+..++..++
T Consensus 145 ~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~ll 183 (412)
T PF01306_consen 145 MWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLL 183 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHH
Confidence 4577788888888888765 34456777665544433333
No 206
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.60 E-value=1.2e-06 Score=83.39 Aligned_cols=182 Identities=10% Similarity=-0.020 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHhHHhHHHHhhhhcCCChhh----HHHHHHHHHHHHHHHHhHHH----HHhhhcCchhHH--HHHHHH
Q 022513 21 FVLSALENMGFIANGISMVLYFKNEMHFDIAG----ASNTLTNFFGSTFLLCLVGG----FISDTYLSRFAT--CLVFGT 90 (296)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~----a~~~~~~~~~~~~~~~l~~G----~laDr~~GRr~~--i~~~~~ 90 (296)
+....+....+....+.++.|.++..+.+... .+++.+...+...+..++.. ++.||..+.+.. +.+|.+
T Consensus 278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~ 357 (475)
T TIGR00924 278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGML 357 (475)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 33334444555556666777777654443221 44555555555555555533 455542122332 367788
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHH
Q 022513 91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF 170 (296)
Q Consensus 91 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~ 170 (296)
+..++.+.+.+....... +...+.++++...++.++|.....|...++.+|..|++. |++.++.
T Consensus 358 l~~~~~~~~~~~~~~~~~----------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~~~g~ 421 (475)
T TIGR00924 358 FCGASFLTFAASIWFADA----------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQMLGM 421 (475)
T ss_pred HHHHHHHHHHHHHhhcCC----------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHH
Confidence 877777666543211100 012356778889999999999999999999999998654 8899999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 022513 171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKP 218 (296)
Q Consensus 171 ~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~ 218 (296)
++....+|..+++.+.....+..+|...|...++..++..++++..+|
T Consensus 422 ~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 422 WFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888777666667777777776666555555544443
No 207
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.59 E-value=4.1e-06 Score=77.94 Aligned_cols=174 Identities=13% Similarity=-0.015 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 022513 22 VLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTI 101 (296)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~ 101 (296)
+..++...+.-....+...|+++.-+.+....+...++..+.-...-.+.+++-.| +|-|+++.++.+.+++=..+.+.
T Consensus 214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433345677888876555776666766666666777777888999999 79999999999888776555554
Q ss_pred HhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH-HHHHHHH
Q 022513 102 QAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF-ATTLAAM 180 (296)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~ 180 (296)
... +. .........+..+-|+..|....+...++.+..|++. |.+..+++.. ...+|..
T Consensus 293 ~~~-~~-------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~ 352 (400)
T PF03825_consen 293 FSD-PW-------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGA 352 (400)
T ss_pred hcC-Cc-------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHH
Confidence 311 00 0011223334456888888888999999999999776 6777777764 5678999
Q ss_pred HHHhhhhhhccccchh------HHHHHHHHHHHHHHHHHHhc
Q 022513 181 IGVTAIVYVFIDQGWW------LGFLISSVATLIGLIALAIG 216 (296)
Q Consensus 181 i~~~~~~~l~~~~gw~------~~f~i~~~~~~~~~i~~~~~ 216 (296)
+|..++|++.+++|-+ ..+.+++++.++..++++..
T Consensus 353 iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 353 IGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999998876533 44555555555555555443
No 208
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.57 E-value=4.1e-06 Score=78.23 Aligned_cols=168 Identities=11% Similarity=0.021 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
.++......++....+++.....|.|+++.+|.+..+.++......++..++..+.+.+.++ .++++.+.....+..+|
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD-PTEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHH
Confidence 34444445555666667777778899999999999998887766667777777777766544 24444444444444455
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH
Q 022513 96 LVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT 175 (296)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~ 175 (296)
.+++....... ...+...+++.++.++|.+...++.....-.+.+ .+ +++..+.+....
T Consensus 298 ~~l~~~~~~~~--------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~--~~-----~G~a~a~~~~~~ 356 (413)
T PRK15403 298 LALLIVGNLLW--------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNN--LP-----KGTVSASLNMVI 356 (413)
T ss_pred HHHHHHHHHHc--------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCC--CC-----CcHHHHHHHHHH
Confidence 44443321100 0122335667778888888877777643322222 11 345555555555
Q ss_pred HHHHHHHHhhhhhhccccchhHHHHHHHHHH
Q 022513 176 TLAAMIGVTAIVYVFIDQGWWLGFLISSVAT 206 (296)
Q Consensus 176 ~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~ 206 (296)
..+..+++.+.+++.++ +-.++|....++.
T Consensus 357 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~ 386 (413)
T PRK15403 357 LMVMAVSVEIGRWLWFN-GGRLPFHLLAVVA 386 (413)
T ss_pred HHHHHHHHHHHHHHHHc-CCchHHHHHHHHH
Confidence 56666666677776554 3355555544443
No 209
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.50 E-value=6e-06 Score=77.34 Aligned_cols=170 Identities=17% Similarity=0.124 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhh---cCchhHH-HHHHHHHHHHHHH
Q 022513 22 VLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDT---YLSRFAT-CLVFGTLEVLSLV 97 (296)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr---~~GRr~~-i~~~~~~~~ig~~ 97 (296)
...+..++.+-.+..++..|.++..|+++..++.+..+.-+.-++.-|+.|.+.|| .+||+|- ++.+.+...+..+
T Consensus 19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~ 98 (467)
T COG2211 19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV 98 (467)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence 35666777777778899999999999999999999999999999999999999997 2688765 4455566666666
Q ss_pred HHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHH
Q 022513 98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL 177 (296)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (296)
++..+. ... .+......++--++.+++......+..++.+|+-++ ++| |.+..++-....++
T Consensus 99 l~F~~p---~~~----------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~E---R~~l~s~R~~~~~~ 160 (467)
T COG2211 99 LLFITP---DFS----------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQE---RASLTSWRMVFASL 160 (467)
T ss_pred HHHcCC---Ccc----------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHH---HHHHHHHHHHHHHH
Confidence 555442 111 123444555666778888888888888888888764 334 67888888888888
Q ss_pred HHHHHHhhhhhhc-----c--ccchhHHHHHHHHHHHHH
Q 022513 178 AAMIGVTAIVYVF-----I--DQGWWLGFLISSVATLIG 209 (296)
Q Consensus 178 G~~i~~~~~~~l~-----~--~~gw~~~f~i~~~~~~~~ 209 (296)
|..+...+...+. + ..||+..-.+.+++..+.
T Consensus 161 g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~ 199 (467)
T COG2211 161 GGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL 199 (467)
T ss_pred HHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence 8776654443332 2 346665555554444333
No 210
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.50 E-value=1.1e-05 Score=73.95 Aligned_cols=168 Identities=16% Similarity=0.160 Sum_probs=125.3
Q ss_pred HHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhh
Q 022513 25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAY 104 (296)
Q Consensus 25 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~ 104 (296)
+...++++.=-..+-+|--+.||++..+.+.++..+..+..++..+.|++..|..|++++..+++...+++..+...+..
T Consensus 218 ~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~ 297 (403)
T PF03209_consen 218 FLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP 297 (403)
T ss_pred HHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444443333455678888999999999999999999999999999999886589999988999999888877776653
Q ss_pred ccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 022513 105 SKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVT 184 (296)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~ 184 (296)
. .+.+.+..+.++.|+|.|.+.......+-|+..+.+ .|...+.+..+..++..++..
T Consensus 298 ~----------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~ 355 (403)
T PF03209_consen 298 L----------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTF 355 (403)
T ss_pred c----------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHH
Confidence 1 235688999999999999988888888888876543 467777777766666666666
Q ss_pred hhhhhcc----------ccchhHHHHHHHHHHHHHHHHHH
Q 022513 185 AIVYVFI----------DQGWWLGFLISSVATLIGLIALA 214 (296)
Q Consensus 185 ~~~~l~~----------~~gw~~~f~i~~~~~~~~~i~~~ 214 (296)
+++.+.| ..+|...|.+-++.+++++.+..
T Consensus 356 ~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 356 LGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5554432 23577788888777776665543
No 211
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.44 E-value=1.3e-05 Score=69.53 Aligned_cols=129 Identities=10% Similarity=0.009 Sum_probs=87.5
Q ss_pred HHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 022513 31 FIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHP 110 (296)
Q Consensus 31 ~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~ 110 (296)
.|....+- ..+++.+|+|.++...+...-.++..+| ++.|.+.|+ +|.+.++.+|.+...+|..++..+.. ....
T Consensus 18 ~Y~Fs~yS-~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~-~~i~- 92 (250)
T PF06813_consen 18 TYTFSAYS-PQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVS-GRIP- 92 (250)
T ss_pred ccchhhhh-HHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHh-CccC-
Confidence 34444333 4578899999999998888888888875 788999999 79999999999999999998887642 1110
Q ss_pred CCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 022513 111 PDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMI 181 (296)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 181 (296)
....+.+.+..++.+.+.+...........+.||++ ||+..+..--...+++.+
T Consensus 93 ----------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~-------RG~vvgilk~~~GLSaai 146 (250)
T PF06813_consen 93 ----------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS-------RGTVVGILKGFFGLSAAI 146 (250)
T ss_pred ----------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc-------cCceehhhhHHHHhHHHH
Confidence 123455555555565655555455445556889853 677666644334444443
No 212
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.41 E-value=8.6e-06 Score=74.19 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSL 96 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~ 96 (296)
.+...+..|+--..-..+..++++|+.+..|++..+++..++.+.++..+|..++.++-.| +-..|.+.+.+++.++-.
T Consensus 238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~ 316 (422)
T COG0738 238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLL 316 (422)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHH
Confidence 3444445555444445667899999999899999999999999999999999999999889 788888877776555444
Q ss_pred HHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 97 VMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
+...+.. + ..-+.+.+++|+..+...|++.+...+..|++.. .++.. -.+..
T Consensus 317 ~~~~l~~-------------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~~---l~mai 368 (422)
T COG0738 317 LAVALIG-------------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSGL---LVMAI 368 (422)
T ss_pred HHHHHhc-------------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----cccee---eeehe
Confidence 3333332 1 2334456788999999999999999999995441 23332 22578
Q ss_pred HHHHHHHhhhhhhccccchhHHHH
Q 022513 177 LAAMIGVTAIVYVFIDQGWWLGFL 200 (296)
Q Consensus 177 ~G~~i~~~~~~~l~~~~gw~~~f~ 200 (296)
+|+.+-|.+.|++.|..+-...+.
T Consensus 369 vGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 369 VGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred ecchHHHHHHHHHHHhhhhHHHHH
Confidence 889999999999999988776655
No 213
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.40 E-value=6.3e-06 Score=76.28 Aligned_cols=172 Identities=12% Similarity=0.029 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcC---CChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMH---FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL 91 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~ 91 (296)
|..|..++........++..-...+.|.+..++ .++...+...++-.+.-++.-.+..++-+| +|.|+.++++..+
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence 556655554444444444444556777776543 334445666677777778888899999999 7999999998888
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
+.+=.+...+++ +.+.+.+...+-++-.+.......-|+++.+|++- ..+.+.+.
T Consensus 299 ~~iRi~~~~~~~-------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~ 353 (412)
T PF01306_consen 299 MAIRIIGSGFAT-------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVG 353 (412)
T ss_dssp HHHHHHHHHT---------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHH
T ss_pred HHHHHHHHhhhc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHH
Confidence 777655554432 34667788888888888888888999999999543 34555553
Q ss_pred -HHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 022513 172 -LFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 172 -~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
+++..+|..+.+.++|++.|+.|++..|++.+.+.+...++
T Consensus 354 ~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li 395 (412)
T PF01306_consen 354 FQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLI 395 (412)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHH
Confidence 46778888888889999999999998888777665544333
No 214
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.39 E-value=4.8e-08 Score=94.01 Aligned_cols=189 Identities=13% Similarity=0.159 Sum_probs=2.9
Q ss_pred HHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHh
Q 022513 24 SALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQA 103 (296)
Q Consensus 24 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~ 103 (296)
.+.+ ...++......+-+++.|++++++++++.+.+.++..+..++..+.++| --|=|-+-++.++..+|.+++++..
T Consensus 12 ~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPh 89 (539)
T PF03137_consen 12 GLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPH 89 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccH
Confidence 3444 5556666666677899999999999999999999999999999999999 3555567788888999998887654
Q ss_pred hccC-CC--------------CCCCC--------C--CCcC---C---cchHHHHHHHHHHHHHcCcCcccchhhhhccc
Q 022513 104 YSKS-LH--------------PPDCG--------K--SSCL---K---GAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQ 152 (296)
Q Consensus 104 ~~~~-~~--------------~~~~~--------~--~~~~---~---~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~ 152 (296)
+... .. ...|. + ..|. . ..-+..++++.++.|+|.....+.-.+|+=|.
T Consensus 90 f~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDn 169 (539)
T PF03137_consen 90 FLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDN 169 (539)
T ss_dssp --------------------------------------------------------------SSS---------------
T ss_pred hhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccc
Confidence 3211 10 01220 0 0000 1 11256788899999999999999999999888
Q ss_pred CCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc--------c-------------c-chhHHHHHHHHHHHHHH
Q 022513 153 FDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI--------D-------------Q-GWWLGFLISSVATLIGL 210 (296)
Q Consensus 153 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~--------~-------------~-gw~~~f~i~~~~~~~~~ 210 (296)
.++++ -..+.+.++.+..+|..+|.++++.... . . .|+.+|.+.+++.++..
T Consensus 170 v~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a 243 (539)
T PF03137_consen 170 VSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA 243 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 77654 4566777777888888888777654310 0 1 27778877777665554
Q ss_pred HHHHhcCCcee
Q 022513 211 IALAIGKPFYR 221 (296)
Q Consensus 211 i~~~~~~~~~~ 221 (296)
+.+ ...||..
T Consensus 244 ipl-~~FPk~l 253 (539)
T PF03137_consen 244 IPL-FFFPKKL 253 (539)
T ss_dssp -----------
T ss_pred HHH-HcCCccC
Confidence 433 3445544
No 215
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.33 E-value=2.8e-05 Score=67.15 Aligned_cols=140 Identities=19% Similarity=0.178 Sum_probs=96.6
Q ss_pred hhcCCCh--hhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCc
Q 022513 44 NEMHFDI--AGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKG 121 (296)
Q Consensus 44 ~~l~~s~--~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (296)
.+++.+. ...+...+.+.....++.++.|.++|| .|||+.+..+.....++.+.......
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~----------------- 91 (338)
T COG0477 30 STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN----------------- 91 (338)
T ss_pred HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc-----------------
Confidence 3444444 467788888888888888999999999 59998888777664555333333221
Q ss_pred chHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH-HHHHHHHHHHhhhhhhcc--ccchhHH
Q 022513 122 AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF-ATTLAAMIGVTAIVYVFI--DQGWWLG 198 (296)
Q Consensus 122 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~~~~~l~~--~~gw~~~ 198 (296)
.....+++.|...|++.|...+...++++|.+|. . ..|+...+.... ...+|..+++.+.+.+.. ..+|+..
T Consensus 92 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (338)
T COG0477 92 VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA 166 (338)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 1356788888889999998889999999999886 1 125666666655 466777777765555443 3578886
Q ss_pred HHHHHHHH
Q 022513 199 FLISSVAT 206 (296)
Q Consensus 199 f~i~~~~~ 206 (296)
|.+.....
T Consensus 167 ~~~~~~~~ 174 (338)
T COG0477 167 FLLAALLG 174 (338)
T ss_pred HHHHHHHH
Confidence 65554433
No 216
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.26 E-value=3.6e-05 Score=71.08 Aligned_cols=107 Identities=10% Similarity=-0.022 Sum_probs=75.6
Q ss_pred HHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 022513 38 MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSS 117 (296)
Q Consensus 38 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 117 (296)
..+|..+.+| +...+.+...+|+.......+.+-|+.|+ +|-|.+.+++.+...+|..+-..+.. +...+
T Consensus 67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~-p~v~~------- 136 (480)
T KOG2563|consen 67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSL-PFVPP------- 136 (480)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccC-ccccc-------
Confidence 3456667777 66677788889999999999999999999 79999999999999999988776642 32211
Q ss_pred cCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCC
Q 022513 118 CLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEND 157 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~ 157 (296)
.........|..+.+...-.+...-+-..+-+|++++
T Consensus 137 ---~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q 173 (480)
T KOG2563|consen 137 ---LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ 173 (480)
T ss_pred ---cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch
Confidence 0011255566677666655444443444455688665
No 217
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.26 E-value=0.00013 Score=67.92 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 022513 21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLT 100 (296)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~ 100 (296)
....++.-+.+-...++++.|+++ .|+|..+.+.+.++..+...+++++.|+++||+..+||.+.+..++..+......
T Consensus 8 s~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 8 SLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455788899876 6799999999999999999999999999999953456666665555444332222
Q ss_pred HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCC
Q 022513 101 IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFD 154 (296)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~ 154 (296)
... +...+++..++..+......|...++.-+...
T Consensus 87 ~~~-------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~ 121 (400)
T PF03825_consen 87 FSS-------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG 121 (400)
T ss_pred Hhc-------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 211 23344445555566555555555555555444
No 218
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.25 E-value=1.1e-05 Score=56.77 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513 23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL 91 (296)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~ 91 (296)
..++...+.-.+.++++.|+++ .|+++.+.+.+.++......+++++.|+++|| +||++.+.....+
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHH
Confidence 3444444555567888888874 89999999999999999999999999999999 6998887765543
No 219
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.24 E-value=1.2e-05 Score=76.47 Aligned_cols=163 Identities=15% Similarity=0.080 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc---CchhHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFATCLVFGTLE 92 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GRr~~i~~~~~~~ 92 (296)
.+|...+..++.....|+...+++.|+++..|+|..++..+...+.++..++.+++|+++||. +.+|........++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 356666777888888899999999999997789999999999999999999999999999992 24555544444433
Q ss_pred -HHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513 93 -VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 93 -~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
.+|.+.+..... ......+.+....+.+...++......+....+. + +-+..+.+
T Consensus 354 ~~~g~~~l~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~---k--~~~~~~~~ 409 (495)
T KOG2533|consen 354 AIIGAISLLAAAV-------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT---K--ALTTVSAI 409 (495)
T ss_pred HHHHHHHHHhhcc-------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH---H--hHHHHhhh
Confidence 334333332211 1112222222333333344444555555554332 1 34444444
Q ss_pred HHHHHHHHHHHH-hhhhhhccccchhHHHHHH
Q 022513 172 LFATTLAAMIGV-TAIVYVFIDQGWWLGFLIS 202 (296)
Q Consensus 172 ~~~~~~G~~i~~-~~~~~l~~~~gw~~~f~i~ 202 (296)
..+.+.++.+++ +..+.....++|...|...
T Consensus 410 i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 410 IDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred hcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 444444444443 3344455557788777443
No 220
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.24 E-value=3.9e-05 Score=72.50 Aligned_cols=174 Identities=19% Similarity=0.084 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHhH---HhHHHHhhhhcCCChhh-HHHHHHHH----HHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513 18 TFVFVLSALENMGFIANG---ISMVLYFKNEMHFDIAG-ASNTLTNF----FGSTFLLCLVGGFISDTYLSRFATCLVFG 89 (296)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~---~~l~~yl~~~l~~s~~~-a~~~~~~~----~~~~~~~~l~~G~laDr~~GRr~~i~~~~ 89 (296)
..+....+...++.+... .+...+.....+.+... ........ .+...+.+++-|.++|| +|||..+....
T Consensus 21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~ 99 (463)
T KOG2816|consen 21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPL 99 (463)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHH
Confidence 344445555555554444 44445554444443322 22233332 45667888999999999 69999999988
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHH--cCcCcccchhhhhcccCCCCChhhhhhhhhh
Q 022513 90 TLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSL--GCGGNRGTLPALGAGQFDENDPKGAKALASY 167 (296)
Q Consensus 90 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~ 167 (296)
+...+..+...+.. +++++ +.++ +.+...+...++++|...++. |...
T Consensus 100 ~~~~l~~~~~~~~~---------------------~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~ 149 (463)
T KOG2816|consen 100 FGTILPALCLLFQG---------------------YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSS 149 (463)
T ss_pred HHHHHhHHHHHHHH---------------------HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHH
Confidence 88877766655432 12222 3332 334466777788888776543 7777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceee
Q 022513 168 FNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRI 222 (296)
Q Consensus 168 ~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~ 222 (296)
++..+.+...+..++|..++++.+..|....|.+..+..+++.+......|+-+.
T Consensus 150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence 7887777888899999999999888888889999888877776655555555443
No 221
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.22 E-value=1.7e-05 Score=74.57 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=109.0
Q ss_pred HHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc--Cc--hhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 022513 38 MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY--LS--RFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC 113 (296)
Q Consensus 38 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~--~G--Rr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~ 113 (296)
...|+++++|+++++.....+...+-- ..-++.|.++|.+ +| ||+-++++.++..++.+.+.... ..
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---~~----- 82 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---AS----- 82 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---cc-----
Confidence 346788999999998777666555443 3466789999984 24 45556667776655554444322 10
Q ss_pred CCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc
Q 022513 114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ 193 (296)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 193 (296)
..+.....+..++..+|........-+...|....+.. + ++...++.+....+|+.++..+.|.+.+..
T Consensus 83 -------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-~---~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~ 151 (433)
T PF03092_consen 83 -------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE-S---RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF 151 (433)
T ss_pred -------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-h---hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 11234455566778888888888888999998765432 1 677888888899999999999999998888
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 022513 194 GWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 194 gw~~~f~i~~~~~~~~~i~ 212 (296)
+++..|.+.+++.++..+.
T Consensus 152 ~~~~~f~i~~~~~~l~~~~ 170 (433)
T PF03092_consen 152 GPQGVFLISAALPLLMLIV 170 (433)
T ss_pred CCeEEehHHHHHHHHHHHH
Confidence 8888888877665555433
No 222
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.20 E-value=5.2e-05 Score=72.67 Aligned_cols=178 Identities=14% Similarity=-0.013 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhHHhHHHHhhh--hcCCCh------hhHHHHHHHHHHHHHHHHhHH----HHHhhhcCchhHHHHHHHHH
Q 022513 24 SALENMGFIANGISMVLYFKN--EMHFDI------AGASNTLTNFFGSTFLLCLVG----GFISDTYLSRFATCLVFGTL 91 (296)
Q Consensus 24 ~~~~~~~~~~~~~~l~~yl~~--~l~~s~------~~a~~~~~~~~~~~~~~~l~~----G~laDr~~GRr~~i~~~~~~ 91 (296)
.+.....+|.+...++.++.. ..+.+. ...++..++..+...+..++. +++.|| ++..+.+.++.++
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l 359 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHH
Confidence 334455556665666655432 111111 113344444444555555555 556666 5666788889999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHH
Q 022513 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFY 171 (296)
Q Consensus 92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~ 171 (296)
..+|.+.+......... + ...+..++....++.++|.+...|...+++.+..|++. |++.++.+
T Consensus 360 ~~l~f~~l~~~~~~~~~---------~-~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g~~ 423 (500)
T PRK09584 360 CSGAFLVLPLGAKFAND---------A-GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMGSW 423 (500)
T ss_pred HHHHHHHHHHHHHhcCC---------C-CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHHHH
Confidence 88888777665422110 0 11234578888999999999999999999999998654 78888888
Q ss_pred HHHHHHHHHHHHhhhhhhcc----------ccchhHHHHHHHHHHHHHHHHHHhcCC
Q 022513 172 LFATTLAAMIGVTAIVYVFI----------DQGWWLGFLISSVATLIGLIALAIGKP 218 (296)
Q Consensus 172 ~~~~~~G~~i~~~~~~~l~~----------~~gw~~~f~i~~~~~~~~~i~~~~~~~ 218 (296)
+++..+|..++..+.+.... ..++...|...++..++..++++..+|
T Consensus 424 ~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 424 FLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777666543211 113556676655554433333333333
No 223
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.18 E-value=1.1e-05 Score=76.71 Aligned_cols=136 Identities=11% Similarity=-0.153 Sum_probs=100.4
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcc
Q 022513 43 KNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGA 122 (296)
Q Consensus 43 ~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (296)
.+.+|+++...+.......++..++..+.+++.+| ++.|+++.++.++..++.+............. ...
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~---------gi~ 349 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF---------GIS 349 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeecccccc---------CCC
Confidence 45789999999999999889999999999999999 79999999999888877644321110000000 000
Q ss_pred hHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc
Q 022513 123 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG 194 (296)
Q Consensus 123 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~g 194 (296)
.........++.+++.+....+...++.+..|++. +++.++++....++|..+++.+++++.+..|
T Consensus 350 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 350 DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11233344566777777777888899999999766 6888999888889999999988888876655
No 224
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.11 E-value=7.7e-05 Score=71.31 Aligned_cols=144 Identities=10% Similarity=-0.017 Sum_probs=93.3
Q ss_pred HHHHHhHHhHHHHhhhhcCCChh----hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhH-------HHHHHHHHHHHHHH
Q 022513 29 MGFIANGISMVLYFKNEMHFDIA----GASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-------TCLVFGTLEVLSLV 97 (296)
Q Consensus 29 ~~~~~~~~~l~~yl~~~l~~s~~----~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~-------~i~~~~~~~~ig~~ 97 (296)
..+......++.|.++..+.+.. ...++.+...+...+..++.+++.|| +|||+ -+.+|.++..++.+
T Consensus 283 ~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~~~~~~ 361 (489)
T PRK10207 283 ILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLCSLGFL 361 (489)
T ss_pred HHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 33444446667777643322210 22344444445566777788999999 79887 36677777777765
Q ss_pred HHHHHhh-ccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHH
Q 022513 98 MLTIQAY-SKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATT 176 (296)
Q Consensus 98 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (296)
.+..... ....+ ...+.+++....++.|+|.+...+....++.+..|++. ++...+.+++..+
T Consensus 362 ~~~~~~~~~~~~~----------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~g~~~l~~~ 425 (489)
T PRK10207 362 TAAAAGMWFADAQ----------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFILGMWFLTQA 425 (489)
T ss_pred HHHHHHHhhcCCC----------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHHHHHHHHHH
Confidence 4432111 01000 01234556677888999999999999999999888554 6788888888888
Q ss_pred HHHHHHHhhhhhh
Q 022513 177 LAAMIGVTAIVYV 189 (296)
Q Consensus 177 ~G~~i~~~~~~~l 189 (296)
+|+.++..++...
T Consensus 426 ig~~lg~~l~~~~ 438 (489)
T PRK10207 426 AAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHh
Confidence 8988887776544
No 225
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.11 E-value=1.8e-08 Score=94.62 Aligned_cols=186 Identities=16% Similarity=0.022 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVL 94 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~i 94 (296)
+.....+....+..+..+....+...++.+..+.++. -.......+...++.+++.++.|| +|||+.++.+.++..+
T Consensus 252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~ 328 (451)
T PF00083_consen 252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAI 328 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccc
Confidence 3444444444444444333333444445556666665 222223345566777888899999 7999999998888776
Q ss_pred HHHHHH-HHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCc-CcccchhhhhcccCCCCChhhhhhhhhhHHHHH
Q 022513 95 SLVMLT-IQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCG-GNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (296)
Q Consensus 95 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~ 172 (296)
..+.+. ........ + ...+.. .++...+...+.+ +..+....+.+|.||++. |.+..+..+
T Consensus 329 ~~~~~~~~~~~~~~~--------~--~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~ 391 (451)
T PF00083_consen 329 CSLILGIIFFLGVSS--------S--SWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSY 391 (451)
T ss_pred ccccccccccccccc--------c--cccccc-cceeeeeccccccccccccccccccccccccc------ccccccccc
Confidence 665553 11000000 0 000111 1111112212222 233555578899999876 777777777
Q ss_pred HHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCce
Q 022513 173 FATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFY 220 (296)
Q Consensus 173 ~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~ 220 (296)
....+++.+++.+..++.+..+-...+.+.+++.++..+..+...|+.
T Consensus 392 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 392 AVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence 777788888887777777665523344454444444444444444443
No 226
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=9.4e-06 Score=73.77 Aligned_cols=162 Identities=16% Similarity=0.016 Sum_probs=107.6
Q ss_pred HHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCc--hhHHHHHHHHHHHHHHHHHHHHhhc
Q 022513 28 NMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLS--RFATCLVFGTLEVLSLVMLTIQAYS 105 (296)
Q Consensus 28 ~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~G--Rr~~i~~~~~~~~ig~~~~~~~~~~ 105 (296)
+...-..-+.+++++.+.+..+..+.+..-.-..+...++..+.|.++|| +| |......+.+ ++|......
T Consensus 283 n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k-~~~~~wl~~~~gl~--~~G~~~~~i---- 355 (464)
T KOG3764|consen 283 NSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADK-YPHLRWLLSLGGLA--TVGVSSGPI---- 355 (464)
T ss_pred cchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHh-cCchhHHHHHHHHH--HHHHHhchh----
Confidence 33333345666777888888555577766666677889999999999999 68 5332223322 233211111
Q ss_pred cCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhh
Q 022513 106 KSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTA 185 (296)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~ 185 (296)
|. .+++..+.+-+...+++.+...+.......+..+.++..+-...|+.++....+..+|..+||.+
T Consensus 356 P~-------------~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~ 422 (464)
T KOG3764|consen 356 PF-------------ATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTF 422 (464)
T ss_pred Hh-------------hhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccc
Confidence 11 12456677777778888877777776666777765442211136788888888999999999999
Q ss_pred hhhhccccchhHHHHHHHHHHHHH
Q 022513 186 IVYVFIDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 186 ~~~l~~~~gw~~~f~i~~~~~~~~ 209 (296)
++.+.+..|++|.-.+.++..++-
T Consensus 423 gg~iv~~iGF~wl~~iig~~n~iy 446 (464)
T KOG3764|consen 423 GGSLVEAIGFEWLMTIIGILNLIY 446 (464)
T ss_pred cchheeehhHHHHHHHHHHHHHHH
Confidence 999999999888766666554443
No 227
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.05 E-value=0.00018 Score=66.05 Aligned_cols=140 Identities=14% Similarity=-0.001 Sum_probs=93.5
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCc-----hhHH-HHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513 42 FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLS-----RFAT-CLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK 115 (296)
Q Consensus 42 l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~G-----Rr~~-i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 115 (296)
+..|++++..-.+..+..-... ....+..|+.||++ + ||.- ++.|..+...|..+...+....... ..
T Consensus 6 MIvEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~----~~ 79 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLV-APLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES----GQ 79 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHH-HHHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc----cc
Confidence 4567888877777766665544 44588899999994 5 4443 5566777776666655543211110 00
Q ss_pred CCcCCcchH--HHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc
Q 022513 116 SSCLKGAIA--AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ 193 (296)
Q Consensus 116 ~~~~~~~~~--~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 193 (296)
.+ +..... ....+...+.|+|.+....+..++.+|..|+++ |.+..++.|.+.-+|..++..+.+.+.+.+
T Consensus 80 ~~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~ 152 (403)
T PF03209_consen 80 QS-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPF 152 (403)
T ss_pred cc-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 00 001112 233344556888888888999999999998765 788999999999999999998888777665
Q ss_pred c
Q 022513 194 G 194 (296)
Q Consensus 194 g 194 (296)
+
T Consensus 153 s 153 (403)
T PF03209_consen 153 S 153 (403)
T ss_pred C
Confidence 5
No 228
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.04 E-value=0.00021 Score=68.64 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=59.7
Q ss_pred cCCchhHHHHHHHHHHHHH-HHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHH
Q 022513 11 KGGFRACTFVFVLSALENM-GFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFG 89 (296)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~ 89 (296)
+..+|.....++...+..+ ++..+..+.+..+ +..|.+... .....+..+...++..++.++.|| +|||+.++.+.
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~ 366 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGA 366 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhH
Confidence 3455555555555554444 4445555555554 344554332 344445566677788888999999 79999999999
Q ss_pred HHHHHHHHHHHHHh
Q 022513 90 TLEVLSLVMLTIQA 103 (296)
Q Consensus 90 ~~~~ig~~~~~~~~ 103 (296)
+.+.++.+++....
T Consensus 367 ~~m~~~~~~~~~~~ 380 (513)
T KOG0254|consen 367 AGMSICLVILAVVG 380 (513)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877654
No 229
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.98 E-value=0.00012 Score=71.91 Aligned_cols=195 Identities=14% Similarity=0.177 Sum_probs=135.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513 14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ 93 (296)
.+.+..++....+......+......+-+++.++++..+.+++.+.+-++..+...+..+.+-| .=|=+.+-+|++++.
T Consensus 95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMG 173 (735)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHH
Confidence 3445444444444444444777777788899999999999999999999999999999999999 355566778999999
Q ss_pred HHHHHHHHHhhccCC-------------CC-------------CCCCC--CCcC--Cc-c--hHHHHHHHHHHHHHcCcC
Q 022513 94 LSLVMLTIQAYSKSL-------------HP-------------PDCGK--SSCL--KG-A--IAAYFYGSLYLYSLGCGG 140 (296)
Q Consensus 94 ig~~~~~~~~~~~~~-------------~~-------------~~~~~--~~~~--~~-~--~~~~~~~~~~l~g~g~g~ 140 (296)
+|.++.++..+...- .+ ..|.. +.|. .. . -+.+++++.++.|+|.-.
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 999888765322110 00 01111 1221 11 1 245778889999999988
Q ss_pred cccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc------------------cc-chhHHHHH
Q 022513 141 NRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI------------------DQ-GWWLGFLI 201 (296)
Q Consensus 141 ~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~------------------~~-gw~~~f~i 201 (296)
..+.-.+|+=|....++ -..+++..+....+|-++|.+++++... .. .|+.+|++
T Consensus 254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 88888888877666543 4567788888888888888887765421 01 38888888
Q ss_pred HHHHHHHHHHHHHh
Q 022513 202 SSVATLIGLIALAI 215 (296)
Q Consensus 202 ~~~~~~~~~i~~~~ 215 (296)
++++.++..+.++.
T Consensus 328 ~g~~~~~~a~p~f~ 341 (735)
T KOG3626|consen 328 CGALLLFSAVPLFF 341 (735)
T ss_pred HHHHHHHHHHHHHh
Confidence 88887776665443
No 230
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.92 E-value=0.00038 Score=66.13 Aligned_cols=204 Identities=10% Similarity=-0.069 Sum_probs=128.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhh-hcCCChh------hH---H-HHHHHHHHHHHHHHhHHHHHhhhcC
Q 022513 11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKN-EMHFDIA------GA---S-NTLTNFFGSTFLLCLVGGFISDTYL 79 (296)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~------~a---~-~~~~~~~~~~~~~~l~~G~laDr~~ 79 (296)
++-||.++.+....++.-++++....+...|+.+ .++-++. +. + +....+.+.+.+..++--++.++ +
T Consensus 254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-~ 332 (477)
T TIGR01301 254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-W 332 (477)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 3567899999999999888988888888888764 4543321 11 2 23334445555666677788998 7
Q ss_pred ch-hHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCCCCCC-cCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCC
Q 022513 80 SR-FATCLVFGTLEVLSLVMLTIQAYSKS-LHPPDCGKSS-CLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEN 156 (296)
Q Consensus 80 GR-r~~i~~~~~~~~ig~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~ 156 (296)
|+ |++..++.++..++.+...+...... ..+..-.+.. -+..+.....++...++|+..+...+.-.+++++..+++
T Consensus 333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~ 412 (477)
T TIGR01301 333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL 412 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence 95 66668887777777766654332110 0000000000 000111244555667788888888888889999988743
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc--hhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513 157 DPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG--WWLGFLISSVATLIGLIALAIGKPF 219 (296)
Q Consensus 157 ~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~g--w~~~f~i~~~~~~~~~i~~~~~~~~ 219 (296)
. ++.|..+++.+.++.+...+..+..+.+.+..| -..++.+.++.++++.+..+...|+
T Consensus 413 ~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 413 G----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred C----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 3 226888999999999999888877666544333 3467777777777776655554444
No 231
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.90 E-value=6e-05 Score=69.84 Aligned_cols=178 Identities=11% Similarity=0.038 Sum_probs=111.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHH--------HHHHHHHHHHH-HHhHHHHHhhhcCchhH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASN--------TLTNFFGSTFL-LCLVGGFISDTYLSRFA 83 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~--------~~~~~~~~~~~-~~l~~G~laDr~~GRr~ 83 (296)
|-+.++-..+..|.-.+++|+...+...-++ .+++.+.+... ...+...+..+ |..+...+.|+ +|||+
T Consensus 302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~ 379 (538)
T KOG0252|consen 302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKY 379 (538)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHH
Confidence 3355566666777778888887766655443 34444433222 12222333333 66777888999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhh
Q 022513 84 TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKA 163 (296)
Q Consensus 84 ~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~ 163 (296)
.-+.+.+++.+-.+.+...-. +.. +..+-.....+..++.-+|=+. +....-+|.||++.
T Consensus 380 iq~~GF~~~~i~~~~~~~~y~--~~~---------~~~Gf~v~y~l~~ff~NFGPn~---ttfivpaE~FParv------ 439 (538)
T KOG0252|consen 380 IQLMGFFIMTIFFFVIAGPYN--QLE---------NTIGFVVLYSLTFFFGNFGPNA---TTFIVPAEIFPARV------ 439 (538)
T ss_pred HHHhhHHHHHHHHHHHcCCcc--ccc---------ccCceeehHHHHHHHHhcCCCc---eeEEeehhhchHHH------
Confidence 999998888776554443211 000 0011122233333444444443 34444569999665
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhcc-----ccchhHHHHHHHHHHHHHHHH
Q 022513 164 LASYFNFYLFATTLAAMIGVTAIVYVFI-----DQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 164 r~~~~~~~~~~~~~G~~i~~~~~~~l~~-----~~gw~~~f~i~~~~~~~~~i~ 212 (296)
|++..++...+.-+|++++.....++.+ ..+.+..+++.+.+++++.+.
T Consensus 440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~ 493 (538)
T KOG0252|consen 440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILF 493 (538)
T ss_pred hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhe
Confidence 8899888888889999999888888887 567888999888888776554
No 232
>PTZ00207 hypothetical protein; Provisional
Probab=97.74 E-value=0.00037 Score=67.76 Aligned_cols=176 Identities=7% Similarity=-0.044 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhc-CCChhh--HHHHHHHHHHHHHHHHhHHHHHhhhcCchhH--------
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEM-HFDIAG--ASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-------- 83 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-~~s~~~--a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~-------- 83 (296)
..+|.+....++...+-..+..|+- ++-+.+ |.+.++ ..+.+++.++++++|.+.+|++... .-||+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~-~~~~~~~~r~prt 430 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW-SQKRRAEDRVPIT 430 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH-HHhhccccccchh
Confidence 4567766666665554444444543 344556 663322 2237889999999999999998832 23332
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhh
Q 022513 84 -TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAK 162 (296)
Q Consensus 84 -~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~ 162 (296)
.+.+..+ +.++.+++++.. | ...++++-++.|++.|..++...+..+|.|. ++
T Consensus 431 ~~l~~~~~-~~~~~lll~~~~--p-----------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~----- 484 (591)
T PTZ00207 431 IALFIPSV-CIITMLTLFLTL--P-----------------KAALPLPYFIAAFANGFMAATIALVTRTIFA-KD----- 484 (591)
T ss_pred HHHHHHHH-HHHHHHHHHHHC--C-----------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc-----
Confidence 2333333 555655555442 2 1368899999999999999999999999999 55
Q ss_pred hhhhhHHHHHHHHHHHHHHH-Hhhhhhhcc-------------ccchhHHHHHHHHHHHHHHHHHHhcCCc
Q 022513 163 ALASYFNFYLFATTLAAMIG-VTAIVYVFI-------------DQGWWLGFLISSVATLIGLIALAIGKPF 219 (296)
Q Consensus 163 ~r~~~~~~~~~~~~~G~~i~-~~~~~~l~~-------------~~gw~~~f~i~~~~~~~~~i~~~~~~~~ 219 (296)
-++.++..+.+.-+|+.+= -.+.|.+.| ...++.+|.+.+++.+++.+.-....-|
T Consensus 485 -~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R 554 (591)
T PTZ00207 485 -PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ 554 (591)
T ss_pred -hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence 5778887777777776652 234454432 1237788888877766665554443333
No 233
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.70 E-value=0.00068 Score=65.82 Aligned_cols=151 Identities=12% Similarity=0.029 Sum_probs=96.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChh---hHHHHHHHHHHHHHHHHhHHHHHhhhcCchhH-HHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIA---GASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-TCLVF 88 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~---~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~-~i~~~ 88 (296)
++|.+...+++.++....+|++..+.|......++-|.. ..++.......+..++.++.|.+.-+ ++|-| .++++
T Consensus 308 ~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw~li~~ 386 (599)
T PF06609_consen 308 DRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKWQLIFG 386 (599)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhHHHHHH
Confidence 456677777788888888888888888877777766653 45666666777778888888999887 68755 44567
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhH
Q 022513 89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF 168 (296)
Q Consensus 89 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~ 168 (296)
++++.++...+.... +. +....+...++.|+|.|...........-..|+++ .+...
T Consensus 387 ~~~~ta~~Gama~~~--~~---------------n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------ig~a~ 443 (599)
T PF06609_consen 387 SVLMTAFCGAMAAVR--PD---------------NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------IGTAT 443 (599)
T ss_pred HHHHHHHHHHHHHcc--CC---------------CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------HHHHH
Confidence 666665544444332 11 11233455667888887765444443333334332 56776
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 022513 169 NFYLFATTLAAMIGVTAIV 187 (296)
Q Consensus 169 ~~~~~~~~~G~~i~~~~~~ 187 (296)
++....-.+|+.+|..+-.
T Consensus 444 gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 444 GLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 6666667777777765543
No 234
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.69 E-value=2.2e-06 Score=74.61 Aligned_cols=135 Identities=13% Similarity=0.219 Sum_probs=103.5
Q ss_pred HhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 022513 36 ISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGK 115 (296)
Q Consensus 36 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 115 (296)
.-+..+.+.+.+++.++..++.++++--+.+.+.++|++-||.+|-|..-++-+.+..+|.++++.-..
T Consensus 64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi----------- 132 (459)
T KOG4686|consen 64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI----------- 132 (459)
T ss_pred hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-----------
Confidence 345567777777777788888899999999999999999999889888766777777788877665321
Q ss_pred CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc
Q 022513 116 SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID 192 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~ 192 (296)
....+.+..||++.|+|.-......+.+..-.|..++ .+-.++..--...+|..+-..+.+++.+.
T Consensus 133 -----~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~ 198 (459)
T KOG4686|consen 133 -----SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDT 198 (459)
T ss_pred -----HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence 2356889999999999987777888899999998765 66777776666677776655556666543
No 235
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.66 E-value=0.0022 Score=61.12 Aligned_cols=136 Identities=15% Similarity=0.017 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHH-HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHH
Q 022513 54 SNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLV-FGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLY 132 (296)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~-~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (296)
+...++..+...+..|+.|-++|+ -|+||.++. ...+..+....+.+.. .+++....+..+
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~-~~~Rk~~l~~~~~~~~~~~~~l~~v~-----------------~~~~~~~~~l~i 134 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADY-GGRRKRFLLIFTLLGVLATALLWFVS-----------------PGQWWLALVLFI 134 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHhC-----------------cchHHHHHHHHH
Confidence 345666777788888899999999 587776554 4444555555544431 122333333333
Q ss_pred HHHHcCcCcccchhhhhcccCCCCChhhhhh---------------------hhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 022513 133 LYSLGCGGNRGTLPALGAGQFDENDPKGAKA---------------------LASYFNFYLFATTLAAMIGVTAIVYVFI 191 (296)
Q Consensus 133 l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~---------------------r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 191 (296)
+..++.+.......+++.|..++++.. +.. |++..+.-+...++|+.+...+.-.+..
T Consensus 135 ia~v~~~~~~vfyna~LP~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~ 213 (477)
T PF11700_consen 135 IANVGYEASNVFYNAYLPDLARPEPRV-RAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVI 213 (477)
T ss_pred HHHHHHHHHHHHHHHHhHhhcCCChhh-hhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666777788898988866420 000 1555555555677787776544332211
Q ss_pred --------ccchhHHHHHHHHHHHH
Q 022513 192 --------DQGWWLGFLISSVATLI 208 (296)
Q Consensus 192 --------~~gw~~~f~i~~~~~~~ 208 (296)
...-|.++.+.++..++
T Consensus 214 ~~~~~~~~~~~~r~~~~~~a~ww~v 238 (477)
T PF11700_consen 214 SPGSTASNTWAIRVAFLIVALWWLV 238 (477)
T ss_pred cCCCccccchhhhHHHHHHHHHHHH
Confidence 12346677766665443
No 236
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.57 E-value=0.0021 Score=51.69 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHH
Q 022513 56 TLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYS 135 (296)
Q Consensus 56 ~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 135 (296)
..++......+..+++..+-++ +|.|++++++.+.+.+-...... + +...++.+-++.|
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~----~----------------~~~~l~~~s~l~G 100 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY----P----------------NSYTLYPASALLG 100 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh----h----------------hHHHHHHHHHHHh
Confidence 3444455566677778888898 89999999999887754333221 1 3467888889999
Q ss_pred HcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 022513 136 LGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV 183 (296)
Q Consensus 136 ~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 183 (296)
+|.+..+.....++.+...+++ +++..+.+....+.+..+|.
T Consensus 101 ~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~ 142 (156)
T PF05978_consen 101 FGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGN 142 (156)
T ss_pred hhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765432 45555555444444444443
No 237
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.47 E-value=0.00033 Score=62.89 Aligned_cols=81 Identities=11% Similarity=-0.003 Sum_probs=64.8
Q ss_pred chHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc---------
Q 022513 122 AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID--------- 192 (296)
Q Consensus 122 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~--------- 192 (296)
.++..++++.+++|.|.+..++..++++++..++++ +.+..++.+....+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 467889999999999999999999999999988654 45667788888999999999998866521
Q ss_pred -------cchhHHHHHHHHHHHH
Q 022513 193 -------QGWWLGFLISSVATLI 208 (296)
Q Consensus 193 -------~gw~~~f~i~~~~~~~ 208 (296)
..|+++|++.+++.++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~ 104 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAV 104 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 3688888865554433
No 238
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.47 E-value=0.0055 Score=56.82 Aligned_cols=151 Identities=11% Similarity=0.066 Sum_probs=88.7
Q ss_pred HHhHHHHhhhh-cCCChhhHHHH-HHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 022513 35 GISMVLYFKNE-MHFDIAGASNT-LTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD 112 (296)
Q Consensus 35 ~~~l~~yl~~~-l~~s~~~a~~~-~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~ 112 (296)
-+++..|+.+. .|++..+...- .-++.-......++...++|. +|.|++++++.+..++...++....
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~--------- 92 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT--------- 92 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC---------
Confidence 36778899887 89998887643 335555666777888999999 8999999998888777766665543
Q ss_pred CCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc--
Q 022513 113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF-- 190 (296)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~-- 190 (296)
+...+-+.-+.-|++.+. ..+..+++=-..|+++ -.+..+....+.-+|..++.+++-.+.
T Consensus 93 ----------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 93 ----------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred ----------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555566666666553 3344444444443221 122223333344444444444333222
Q ss_pred cccchhHHHHHHHHHHHHHHHH
Q 022513 191 IDQGWWLGFLISSVATLIGLIA 212 (296)
Q Consensus 191 ~~~gw~~~f~i~~~~~~~~~i~ 212 (296)
+..++.....+......+++++
T Consensus 156 ~~~sy~~L~~isl~~~~~a~~~ 177 (412)
T PF01770_consen 156 GGVSYFQLNYISLASVSLALLI 177 (412)
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 2344555656665555444443
No 239
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.45 E-value=0.00065 Score=64.27 Aligned_cols=155 Identities=8% Similarity=-0.074 Sum_probs=106.3
Q ss_pred hHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 022513 34 NGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDC 113 (296)
Q Consensus 34 ~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~ 113 (296)
+.++|--+++ +.+-.+.-.+.......++-.+.-++.+++-.+ +|+-+++..+++...+=.+..+...
T Consensus 390 v~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L~---------- 457 (618)
T KOG3762|consen 390 VFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYLQ---------- 457 (618)
T ss_pred HHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHhc----------
Confidence 4445544443 445444444543444455666777888999999 7999999888877665544443332
Q ss_pred CCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHH-HHHHHHHHHHHhhhhhhccc
Q 022513 114 GKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL-FATTLAAMIGVTAIVYVFID 192 (296)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~ 192 (296)
+.++.+..-++.|+..+.++.++.+|+++..|++- +.+.-++.+ ..-.+|-.+|.++++.+.+.
T Consensus 458 ---------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~ 522 (618)
T KOG3762|consen 458 ---------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVER 522 (618)
T ss_pred ---------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence 34566666789999999999999999999999765 344444443 23456666777788888888
Q ss_pred cchhHHHHHHHHHHHHHHHHHHh
Q 022513 193 QGWWLGFLISSVATLIGLIALAI 215 (296)
Q Consensus 193 ~gw~~~f~i~~~~~~~~~i~~~~ 215 (296)
++-+..|.+.++..++.++.+..
T Consensus 523 fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 523 FGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887777666655543
No 240
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.41 E-value=0.00086 Score=66.19 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhHHHHHhhhcCc--hhHHHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTYLS--RFATCLVFGTLE 92 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~~G--Rr~~i~~~~~~~ 92 (296)
..+...+..++....++++..++|.|+++++|+++.+++.+.+...+ +..++.+++|++.|| ++ .|+.+.++.++.
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r-~~~~~~~~~~~~~~~~ 409 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKK-FKLNVKKAAYFAICLS 409 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeee-ecccHHHHHHHHHHHH
Confidence 44556667778888889999999999999999999999988887665 567899999999999 67 456777777666
Q ss_pred HHHHHH
Q 022513 93 VLSLVM 98 (296)
Q Consensus 93 ~ig~~~ 98 (296)
+++.+.
T Consensus 410 ~~~~~~ 415 (633)
T TIGR00805 410 TLSYLL 415 (633)
T ss_pred HHHHHH
Confidence 666544
No 241
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.35 E-value=0.0035 Score=58.22 Aligned_cols=119 Identities=15% Similarity=0.056 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh-HHHHHHHHHHHHHHHHH
Q 022513 21 FVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF-ATCLVFGTLEVLSLVML 99 (296)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr-~~i~~~~~~~~ig~~~~ 99 (296)
+......-..+|++.+.+..- ...-|.+...+|.+.....+++.++.++.|.++|| .... +++.+......++...+
T Consensus 272 ~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dk-tk~fk~~~~v~~~~~~v~~~~l 349 (480)
T KOG2563|consen 272 AICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADK-TKKFKLTTLVLYLFALVGTLML 349 (480)
T ss_pred HHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 333333344445554444322 23456777788888888889999999999999999 4554 45555555555553222
Q ss_pred HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhccc-CCCC
Q 022513 100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQ-FDEN 156 (296)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~-~~~~ 156 (296)
......+ ...+.++....+.|+..-+..|.-..+..|. ||..
T Consensus 350 ~~~t~~~---------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~ 392 (480)
T KOG2563|consen 350 LTCTLFL---------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA 392 (480)
T ss_pred HHhhccC---------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC
Confidence 2221111 1223445555566666666777777777776 5543
No 242
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.00038 Score=64.56 Aligned_cols=166 Identities=17% Similarity=0.086 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhc---CchhHHHHH-HHH
Q 022513 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTY---LSRFATCLV-FGT 90 (296)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GRr~~i~~-~~~ 90 (296)
+.++.+..+.+...+++--=..++++|+ +.+|.+..-.+.+-.+.-+...+.+++.|..+||+ +||||-++. +..
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl-~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYL-QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHH-HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 4455555555555555433346677776 46788877666665566667788899999999973 698886654 444
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCC-CCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHH
Q 022513 91 LEVLSLVMLTIQAYSKSLHPPDCGK-SSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFN 169 (296)
Q Consensus 91 ~~~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~ 169 (296)
...++.++...+..+... -|.+ ..|...-....++++..+.=+..-..+.+.-++++|+...+++++ | ..+
T Consensus 111 ~i~~~l~Lig~aaDig~~---lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~---~--Ans 182 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLL---LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT---R--ANS 182 (498)
T ss_pred HHHHHHhhhhhHhhhhHH---hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh---c--cch
Confidence 555666655554322111 1111 112223345666777777777777788899999999987654322 2 556
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 022513 170 FYLFATTLAAMIGVTAIVYV 189 (296)
Q Consensus 170 ~~~~~~~~G~~i~~~~~~~l 189 (296)
++-+.+.+|+.+|+..++|.
T Consensus 183 ~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 183 VFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hHHHHHHhcceeeeeccccc
Confidence 66678899999888777654
No 243
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.18 E-value=0.016 Score=55.77 Aligned_cols=104 Identities=9% Similarity=-0.034 Sum_probs=67.8
Q ss_pred HHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcc
Q 022513 63 STFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNR 142 (296)
Q Consensus 63 ~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 142 (296)
.........+..-|+ +|||.....+..+..++.++....... .......+...+..++.+...
T Consensus 362 ~~~p~~~~~~~~~~~-~gR~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ 424 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPE-FGRRPPLFLSLFLAGIGLLLFGWLPDD----------------LGGWLHWILPLLGKFFIGSAF 424 (521)
T ss_pred HHhhHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHhhcc----------------chhHHHHHHHHHHHHHHHHHH
Confidence 344455566899999 799999999999888887776655311 110112222222333333344
Q ss_pred cchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 022513 143 GTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV 189 (296)
Q Consensus 143 ~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l 189 (296)
.....+.+|++|+.. |....+.......+|+.++|.+....
T Consensus 425 ~~~~~~~~el~pt~~------r~~~~~~~~~~~~~~~i~ap~~~~~~ 465 (521)
T KOG0255|consen 425 NLIFLYSAELIPTVV------RNTAVGAISAAARLGSILAPLFPLLL 465 (521)
T ss_pred HHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788899999765 67777777778888988888766444
No 244
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.13 E-value=0.022 Score=54.44 Aligned_cols=140 Identities=9% Similarity=-0.066 Sum_probs=89.5
Q ss_pred HHhHHhHHHHhhhh-----cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh-H------HHHHHHHHHHHHHHHH
Q 022513 32 IANGISMVLYFKNE-----MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF-A------TCLVFGTLEVLSLVML 99 (296)
Q Consensus 32 ~~~~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr-~------~i~~~~~~~~ig~~~~ 99 (296)
....+.+..|.++. +|++ -..++..++..+...+..|+.+++=.| .+|| | -+.+|.++..++.+.+
T Consensus 285 ~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~-l~~~~~~~s~~~Kfa~g~~~~g~~f~~l 362 (493)
T PRK15462 285 QQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKE-SVAGNRTVRIWGKFALGLGLMSAGFCIL 362 (493)
T ss_pred HHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHH-HhcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 33445555666553 2322 124556666666666667777777666 4332 1 2667788888887777
Q ss_pred HHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH-HHHH
Q 022513 100 TIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA-TTLA 178 (296)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~-~~~G 178 (296)
..+......+ ...+..++++..++.++|.-...|...+++++..|++- ++..++.+++. ..+|
T Consensus 363 ~~~~~~~~~~----------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~------~g~~mg~w~l~~~~~~ 426 (493)
T PRK15462 363 TLSARWSAMY----------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV------TGVLTGIYMLLSGAIA 426 (493)
T ss_pred HHHHhhcCCC----------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH------HHHHHHHHHHHHHHHH
Confidence 6654211100 11345667778888999999999999999999999654 78888887764 3677
Q ss_pred HHHHHhhhhhh
Q 022513 179 AMIGVTAIVYV 189 (296)
Q Consensus 179 ~~i~~~~~~~l 189 (296)
..++..+.+..
T Consensus 427 ~~~~g~~~~~~ 437 (493)
T PRK15462 427 NYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHh
Confidence 77766665544
No 245
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.12 E-value=0.0072 Score=43.20 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=55.6
Q ss_pred HHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHh
Q 022513 38 MVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQA 103 (296)
Q Consensus 38 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~ 103 (296)
+.+.++++.++|.++++++-+...++..+|.+...++.++ ..+++.+..+.++..+..+.+....
T Consensus 14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456889999999999999999999999999999999998 5778888888888887777666543
No 246
>PRK03612 spermidine synthase; Provisional
Probab=96.86 E-value=0.074 Score=51.33 Aligned_cols=55 Identities=4% Similarity=-0.114 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhh
Q 022513 23 LSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDT 77 (296)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr 77 (296)
..++..++.-+......-.+...+|-+..+.+.+++++.++..+|..++++++++
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3334343333333344444555678888888999999999999999998888755
No 247
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.83 E-value=0.03 Score=51.78 Aligned_cols=127 Identities=17% Similarity=0.018 Sum_probs=79.1
Q ss_pred hHHhHHHHhhhhcCC---Chhh----HHHHHHHHHHHHHHHHhHHHHHhhhcCchhH-HHHHHHHHHHHHHHHHHHHhhc
Q 022513 34 NGISMVLYFKNEMHF---DIAG----ASNTLTNFFGSTFLLCLVGGFISDTYLSRFA-TCLVFGTLEVLSLVMLTIQAYS 105 (296)
Q Consensus 34 ~~~~l~~yl~~~l~~---s~~~----a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~-~i~~~~~~~~ig~~~~~~~~~~ 105 (296)
++...|.|+++..+- ++.+ .+...++..+..++..|+-|-++|+ .|+|| .+.+..++.++.+..++....
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~~- 111 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIPP- 111 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence 445678888876544 4332 2344556666777788888999999 58655 455556666666666555421
Q ss_pred cCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 022513 106 KSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV 183 (296)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 183 (296)
...+....+...+..++.........+++.+..++++.+ |.+.. -+-..++|+.+.-
T Consensus 112 ---------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~----riS~l--g~~~gylgs~i~l 168 (438)
T COG2270 112 ---------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG----RISGL--GWALGYLGSVILL 168 (438)
T ss_pred ---------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC----ccccc--ccccccccchHHH
Confidence 123445555566777888888888899999988765421 33333 2334566665543
No 248
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.0009 Score=58.21 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=63.8
Q ss_pred HHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcC
Q 022513 40 LYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL 119 (296)
Q Consensus 40 ~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 119 (296)
.|+-+.+++...+.+.+..+..+...+...+.|-++|+ .|||+.....++.+++..+ .-.
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYiLsCi----TKh--------------- 120 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYILSCI----TKH--------------- 120 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHHHHHH----hhc---------------
Confidence 45566788888887766555555566666777889999 7999987777777665432 111
Q ss_pred CcchHHHHHHHHHHHHHcCcCcccchhh-hhcccC
Q 022513 120 KGAIAAYFYGSLYLYSLGCGGNRGTLPA-LGAGQF 153 (296)
Q Consensus 120 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~e~~ 153 (296)
+.++-.+++||++-|+..+...++.-+ +++|.-
T Consensus 121 -SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 121 -SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred -CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 234567899999999988776655544 345543
No 249
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=96.65 E-value=0.18 Score=48.05 Aligned_cols=163 Identities=12% Similarity=0.023 Sum_probs=86.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCC-----hhhHHHHHHHHHHHHHH-HHhHHHHHhhhcCchhHHH
Q 022513 12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFD-----IAGASNTLTNFFGSTFL-LCLVGGFISDTYLSRFATC 85 (296)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s-----~~~a~~~~~~~~~~~~~-~~l~~G~laDr~~GRr~~i 85 (296)
.-+|.++......++-.+.|+.+. -+++.+..+ .+...++-....+.+.+ ..++-+++++| ++|++.+
T Consensus 4 ~E~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf 77 (472)
T TIGR00769 4 HELKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALF 77 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhH
Confidence 345556666666667666665443 245565553 23444444433333333 37788999999 7999987
Q ss_pred HHHHHHHHHHHHHHHHHhhccC---CCCC-CCCCC--CcCC----------cchHHHHHHHHHHHHHcCcCccc-chhhh
Q 022513 86 LVFGTLEVLSLVMLTIQAYSKS---LHPP-DCGKS--SCLK----------GAIAAYFYGSLYLYSLGCGGNRG-TLPAL 148 (296)
Q Consensus 86 ~~~~~~~~ig~~~~~~~~~~~~---~~~~-~~~~~--~~~~----------~~~~~~~~~~~~l~g~g~g~~~~-~~~~~ 148 (296)
.+....++.-.+++.... .|. .+|. .|.+. .-+. .-....+++..=+.+ ....+ ..-.+
T Consensus 78 ~~~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~---~~vvS~lFW~f 153 (472)
T TIGR00769 78 YTVISPFLGFFALFAFVI-YPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWG---SVVLSLLFWGF 153 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-hcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 765555544444433321 111 1110 00000 0000 000112222211111 11122 44577
Q ss_pred hcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc
Q 022513 149 GAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF 190 (296)
Q Consensus 149 ~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~ 190 (296)
..|.+..++ ..+++..+..+.|+|..+++.+..++.
T Consensus 154 andi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 154 ANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889887543 468889999999999999998887765
No 250
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.48 E-value=0.023 Score=53.93 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=106.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHH-HhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHH-HHhhhcCchhHHHHHH
Q 022513 11 KGGFRACTFVFVLSALENMGFI-ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGG-FISDTYLSRFATCLVF 88 (296)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G-~laDr~~GRr~~i~~~ 88 (296)
.++.|..+.+....+.....-. +....+..|+...++++..+.+...+.......++.++.. .+.-. +|-|+++..|
T Consensus 236 ~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lG 314 (463)
T KOG2816|consen 236 VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLG 314 (463)
T ss_pred cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHH
Confidence 3444555555554444333322 2332556788889999999999888888888888888887 55666 8999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhH
Q 022513 89 GTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYF 168 (296)
Q Consensus 89 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~ 168 (296)
+....++..+..++. +.++.+.+.++.++. +...+...++.+-+.+.++ +|..+
T Consensus 315 l~~~~~~~~~~af~~-------------------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~g~v~ 368 (463)
T KOG2816|consen 315 LLSEFLQLLLFAFAT-------------------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------QGKVF 368 (463)
T ss_pred HHHHHHHHHHHHHhc-------------------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------ccchh
Confidence 998888888877764 224555555554443 4456777787877777655 78888
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 022513 169 NFYLFATTLAAMIGVTAIVYV 189 (296)
Q Consensus 169 ~~~~~~~~~G~~i~~~~~~~l 189 (296)
++......+.+.++|.+-+.+
T Consensus 369 ~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 369 GIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred hHHHHHHHHhhhhhHHHHHHH
Confidence 888888888888887775544
No 251
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.43 E-value=0.032 Score=51.09 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHh-hhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHH-HHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYF-KNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATC-LVFGTLEV 93 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i-~~~~~~~~ 93 (296)
.++..+....+.....|....+...++ .+.+|+++.+.+.+.+...+.+.+.++.-++..||+.|.-+.. ..+...+.
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 344444444333333334444444444 5689999999998888777777777888888888854443333 33333333
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHH
Q 022513 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (296)
Q Consensus 94 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 173 (296)
-..++...+. ....++.+..+-.+..+...++...++....|.++ ||+..+....
T Consensus 341 P~~llls~~~-------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~S 395 (451)
T KOG2615|consen 341 PAFLLLSLAR-------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFRS 395 (451)
T ss_pred HHHHHHhccc-------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHHH
Confidence 2222222221 22567788888888888888888888888888665 7888888888
Q ss_pred HHHHHHHHHHhhhhhhcc
Q 022513 174 ATTLAAMIGVTAIVYVFI 191 (296)
Q Consensus 174 ~~~~G~~i~~~~~~~l~~ 191 (296)
...++-.+||++.|.+..
T Consensus 396 l~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 396 LGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHhhhhhhheeEE
Confidence 889999999999876643
No 252
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.34 E-value=0.17 Score=47.67 Aligned_cols=137 Identities=10% Similarity=0.001 Sum_probs=96.8
Q ss_pred HhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 022513 33 ANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD 112 (296)
Q Consensus 33 ~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~ 112 (296)
+.-..+..|+... |+++...+..-+...+....++.+..++-+| +|-.|+=.++.....+...+...+...+...
T Consensus 276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~--- 350 (432)
T PF06963_consen 276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPGSP--- 350 (432)
T ss_pred cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCCCC---
Confidence 3445677888776 9999999988888888899999999999999 7999998888877665555544433222110
Q ss_pred CCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 022513 113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAI 186 (296)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~ 186 (296)
. ...+...++.+.++.=+|.=++--+..-++-|..|+++ |+...+.-....++...+...++
T Consensus 351 -----~-~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 351 -----F-SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred -----c-hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12245566667666667766677777777888777554 78888877777777777765443
No 253
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.03 E-value=0.0017 Score=62.84 Aligned_cols=170 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhHHHHHhhhc-CchhHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTY-LSRFATCLVFGTLEVL 94 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~-~GRr~~i~~~~~~~~i 94 (296)
..+..+....+.....|..+++|-|++++|++++.+++.+.+...+ +..+|.++||++..|+ ++.|+.+....+..++
T Consensus 307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v 386 (539)
T PF03137_consen 307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIV 386 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence 3344456667788888999999999999999999999988887655 6678999999999984 3445555555444444
Q ss_pred HHHHHHH-----HhhccC--CCC---------------CCCC-----------CCCcCCc--chHHHHHHHHHHHHHcCc
Q 022513 95 SLVMLTI-----QAYSKS--LHP---------------PDCG-----------KSSCLKG--AIAAYFYGSLYLYSLGCG 139 (296)
Q Consensus 95 g~~~~~~-----~~~~~~--~~~---------------~~~~-----------~~~~~~~--~~~~~~~~~~~l~g~g~g 139 (296)
+.+.... ....+. ... ..|. .+.|+.. .....+++..++..+..+
T Consensus 387 ~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~ 466 (539)
T PF03137_consen 387 SVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTF 466 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHH
Confidence 3332111 110000 000 1221 1123333 223445555455444444
Q ss_pred CcccchhhhhcccCCCCChhhhhhhhhhHHHHHHH-HHHHHHHHHhhhhhhccc
Q 022513 140 GNRGTLPALGAGQFDENDPKGAKALASYFNFYLFA-TTLAAMIGVTAIVYVFID 192 (296)
Q Consensus 140 ~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~-~~~G~~i~~~~~~~l~~~ 192 (296)
..........-...++++ |.-+.++.... --+|..-||++.|++.|.
T Consensus 467 ~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 467 MSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ------------------------------------------------------
T ss_pred hcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 444444444445566544 55565655433 456667788888887775
No 254
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=95.83 E-value=0.0065 Score=57.69 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=50.4
Q ss_pred HHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 30 GFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 30 ~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
.+-.+.+.++.|.. ++|+++.+.+.+++.--+..+++.|++|++|||| -++|.+++++.+..+.
T Consensus 26 ~~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~ 89 (618)
T KOG3762|consen 26 RFGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVT 89 (618)
T ss_pred cccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHH
Confidence 33356678888875 7999999999999999999999999999999995 6666555555554443
No 255
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=95.61 E-value=0.13 Score=48.29 Aligned_cols=132 Identities=14% Similarity=0.006 Sum_probs=67.3
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchh----HHHHHHHHHHHHH---HHHHHHHhhccCCCCCCCCCCC
Q 022513 45 EMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF----ATCLVFGTLEVLS---LVMLTIQAYSKSLHPPDCGKSS 117 (296)
Q Consensus 45 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr----~~i~~~~~~~~ig---~~~~~~~~~~~~~~~~~~~~~~ 117 (296)
-.|.+..+..+...+..+++.+|.++||.++|+ +-|. .+..+..+....| .+.+.... +... .+
T Consensus 277 ~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~-~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~--~~~~-----~~- 347 (493)
T KOG1330|consen 277 LIGFDHNATLIFGGVTCAGGSLGVLFGGIISDK-LSRIFPNSGTLRASQLSAALGAPLSIPFLFLF--PAFT-----SS- 347 (493)
T ss_pred HhCCccccchhhhhHHHhhchhhheehHHHHHH-HHHhcccccchhHHHHHHhhhhhHHHHHHHHH--Hhhh-----hH-
Confidence 345566666677778889999999999999999 3321 2233333332222 22221111 1000 00
Q ss_pred cCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHH-HHHHHHHHhhhhhhccc-cch
Q 022513 118 CLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFAT-TLAAMIGVTAIVYVFID-QGW 195 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~-~~G~~i~~~~~~~l~~~-~gw 195 (296)
.....+.+++++..+... .++.......|..|++. |.+.+++..... .+|..-+|.+.+.+.++ .+|
T Consensus 348 -s~~~~~il~~~g~~~~~~----~~a~n~~i~l~vV~p~~------Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~ 416 (493)
T KOG1330|consen 348 -SMIFGLILFLVGETISWF----NWATNNPIFLEVVPPSR------RTTAYALDTVFEHIFGDAASPYIVGILSDKLRGY 416 (493)
T ss_pred -HHHHHHHHHHHHHHHHhc----ccccccceeeEecCccc------ccHHHHHHHHHHHHhccCCCcceehhHHHHhhCC
Confidence 000112222233222222 23333445567777654 778888766443 44555556577777665 355
Q ss_pred h
Q 022513 196 W 196 (296)
Q Consensus 196 ~ 196 (296)
+
T Consensus 417 ~ 417 (493)
T KOG1330|consen 417 K 417 (493)
T ss_pred C
Confidence 4
No 256
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=94.95 E-value=1.5 Score=41.29 Aligned_cols=76 Identities=12% Similarity=-0.095 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ 93 (296)
.+.+....++.+++-=+.....+.|+.+-+.-+---.+..-..-.+...+..+..|..-|| .-|.+++..+.++.-
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn 79 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQN 79 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHH
Confidence 3445555666666554444555677766543332222322333345556667777888999 699998887765543
No 257
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.57 E-value=0.17 Score=50.37 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhHHHHHhhhc-CchhHHHHHHHHHHHH
Q 022513 17 CTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFLLCLVGGFISDTY-LSRFATCLVFGTLEVL 94 (296)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~-~GRr~~i~~~~~~~~i 94 (296)
....++...++...+.|..+++|-|++++++.++..+..+++...+ +..+|..++|++.-|+ +.-|.+..+..+..++
T Consensus 394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l 473 (735)
T KOG3626|consen 394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL 473 (735)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence 3445567788889999999999999999999999999988876655 4567899999999984 3445554444444433
Q ss_pred H
Q 022513 95 S 95 (296)
Q Consensus 95 g 95 (296)
.
T Consensus 474 ~ 474 (735)
T KOG3626|consen 474 S 474 (735)
T ss_pred H
Confidence 3
No 258
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=93.49 E-value=1.3 Score=40.84 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=81.4
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhh-----hcCchhHH
Q 022513 10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISD-----TYLSRFAT 84 (296)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laD-----r~~GRr~~ 84 (296)
.|+.++.+..+++....+..- +|.....| ++-+.-|.|-++.+....++ --+-.-++++++-| | +||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP-~GL~~~iP-~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~-~Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIP-LGLIGAIP-LLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKR-FGRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCc-hhHhhhhH-HHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHh-hccccc
Confidence 345667788888888888776 56766444 44445577766655432221 12334568888999 8 899997
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhh
Q 022513 85 CLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKAL 164 (296)
Q Consensus 85 i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r 164 (296)
-++-+ -+.+|.++..++-..+.... ++.+ ..+...+....++.-++.+..-.++-.+.-.+..+++ .
T Consensus 101 Wvvp~-q~llG~~mllLs~~v~~~~g---~ng~---~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~------l 167 (510)
T KOG3574|consen 101 WVVPC-QYLLGLFMLLLSYLVDRGLG---GNGG---LPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN------L 167 (510)
T ss_pred eeeeh-HHHHHHHHHHHhhCCCcccc---cCCC---CcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh------c
Confidence 65432 23455555555432111100 0111 1112222223344455555444444444444443222 3
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q 022513 165 ASYFNFYLFATTLAAMIGVTA 185 (296)
Q Consensus 165 ~~~~~~~~~~~~~G~~i~~~~ 185 (296)
+-+......+.+.|.+++..+
T Consensus 168 gyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 168 GYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred CchhHHHHHHHhhhHHhhcce
Confidence 333333445667777776544
No 259
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=93.38 E-value=1.8 Score=41.14 Aligned_cols=146 Identities=11% Similarity=-0.101 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcCchh---H----HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHH
Q 022513 54 SNTLTNFFGSTFLLCLVGGFISDTYLSRF---A----TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAY 126 (296)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~G~laDr~~GRr---~----~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (296)
++..+...+...+..++..++--+ +||+ + -+.++.++...+.+++..... ....+ .+..+..+
T Consensus 327 ~~fQslNp~~Iii~~pI~a~l~~~-l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~-~~~~~--------~~~~s~~~ 396 (498)
T COG3104 327 AWFQSLNPFFIILFSPILAALWTK-LGRGNKQPSTPIKFALGLILAGLGFLILLLAGI-WFGGP--------SGLVSVWW 396 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhH-hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH-hhcCC--------CCCcCHHH
Confidence 344444445555556666666555 3444 1 345556666666555554411 11100 01245678
Q ss_pred HHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhh------hccccchhHHHH
Q 022513 127 FYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVY------VFIDQGWWLGFL 200 (296)
Q Consensus 127 ~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~------l~~~~gw~~~f~ 200 (296)
++.+.+++++|.=...|.-.++++...|+.- .+..++.+.+....|..++..+.+. ..+.......|+
T Consensus 397 lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~ 470 (498)
T COG3104 397 LVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFG 470 (498)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHH
Confidence 8888999999998888988898888888532 5667777777777777777665552 112223345566
Q ss_pred HHHHHHHHHHHHHHh
Q 022513 201 ISSVATLIGLIALAI 215 (296)
Q Consensus 201 i~~~~~~~~~i~~~~ 215 (296)
..+...++..+..+.
T Consensus 471 ~~g~v~i~~~~~~~~ 485 (498)
T COG3104 471 TIGVVAIVIGILLLL 485 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555544433333333
No 260
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.94 E-value=2.5 Score=40.06 Aligned_cols=79 Identities=13% Similarity=0.003 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHH
Q 022513 57 LTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSL 136 (296)
Q Consensus 57 ~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 136 (296)
..+......+..++++.+-|. +|.|+.+.+++..+..-.+.+... +-..++.+-.+.|+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~--------------------N~y~~yfssallG~ 114 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP--------------------NSYYLYFSSALLGF 114 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc--------------------chHHHHHHHHHhhh
Confidence 444555667788899999999 899999999998877654443332 12568888899999
Q ss_pred cCcCcccchhhhhcccCCCC
Q 022513 137 GCGGNRGTLPALGAGQFDEN 156 (296)
Q Consensus 137 g~g~~~~~~~~~~~e~~~~~ 156 (296)
|.+..+...-.+++|....+
T Consensus 115 Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 115 GAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred hHHheecccceehhhcCChh
Confidence 99999998889998877644
No 261
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=91.53 E-value=4.3 Score=40.46 Aligned_cols=166 Identities=13% Similarity=-0.023 Sum_probs=110.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHH
Q 022513 47 HFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAY 126 (296)
Q Consensus 47 ~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (296)
+...........++.....+..+.....+|-.-|+...+..-++.++++.+...+... ... +.......
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a~----------~~~~~~~~ 84 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GAI----------PSSGHPLH 84 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccC----------cccccchH
Confidence 3344456777888899999999999999999767777888877778877777665542 110 01122334
Q ss_pred HHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc-hhH------HH
Q 022513 127 FYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQG-WWL------GF 199 (296)
Q Consensus 127 ~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~g-w~~------~f 199 (296)
..++...+.++.++..++.+.+.+++++.. +...+.+..+++++..+.+... .+++..+..... +.. .|
T Consensus 85 ~~~~l~gLaLia~G~GgiKp~vsaf~gdqf---~~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 85 DLLDLLGLALIALGTGGIKPCVSAFGGDQF---EERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHhhccccccCchhhhHhhc---CccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccCcch
Confidence 456667788889999999999999998743 3444567889999888877764 566666654432 321 23
Q ss_pred H-HHHHHHHHHHHHHHhcCCceeecCCCC
Q 022513 200 L-ISSVATLIGLIALAIGKPFYRIQQPGE 227 (296)
Q Consensus 200 ~-i~~~~~~~~~i~~~~~~~~~~~~~~~~ 227 (296)
. ..++.+++.++.++.....+...++++
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~ 189 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKP 189 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 3 444555555666666666555555443
No 262
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=90.99 E-value=1.9 Score=38.14 Aligned_cols=138 Identities=11% Similarity=0.073 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcCchhH---HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHH
Q 022513 54 SNTLTNFFGSTFLLCLVGGFISDTYLSRFA---TCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGS 130 (296)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~G~laDr~~GRr~---~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (296)
+.+.+.+++...+|.-+...+..| .|.+ .+.+..++..+...+..+..+ ..| +..+...-+++
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~--s~~~ve~ymqivf~vs~a~l~Lpilt~~---vsP---------~kes~~~s~i~ 350 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSR--SSPKVESYMQIVFLVSIAALLLPILTSS---VSP---------SKESPSESLIG 350 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhc--CCcccchHHHHHHHHHHHHHHHHHHHhc---cCC---------CcCCchHHHHH
Confidence 667777888888888777777776 2333 344444443333332222221 111 12233444667
Q ss_pred HHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc-cccchhHHHHHHHHHHHHH
Q 022513 131 LYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVF-IDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 131 ~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~-~~~gw~~~f~i~~~~~~~~ 209 (296)
..+.-.+.|.++|.+.-+=+...|++. |.+.++++..-.|+..-++-... -.. ...+-|..|.++.+.+.++
T Consensus 351 F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynl-h~~~~p~~tr~mf~icS~~~~~a 423 (454)
T KOG4332|consen 351 FCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNL-HVDAFPTTTRNMFGICSAFLFVA 423 (454)
T ss_pred HHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheec-ccccCccccchhhhhhHHHHHHH
Confidence 777778889999999887777777544 78888887766665543321110 011 1245678899988877766
Q ss_pred HHH
Q 022513 210 LIA 212 (296)
Q Consensus 210 ~i~ 212 (296)
.+.
T Consensus 424 ~i~ 426 (454)
T KOG4332|consen 424 SIL 426 (454)
T ss_pred HHH
Confidence 543
No 263
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=90.69 E-value=1.5 Score=40.73 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=47.9
Q ss_pred HHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCc
Q 022513 60 FFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCG 139 (296)
Q Consensus 60 ~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g 139 (296)
-.+-..+.-+++-+.-+| +..+.=+.+..++..+|.++.+++. +.+.-++|.++.+++.|
T Consensus 68 di~P~l~~Kl~aP~fi~~-v~y~~Ri~~~~~l~~~g~l~va~~~-------------------~v~~~l~Gv~las~ssg 127 (402)
T PF02487_consen 68 DILPSLLVKLIAPFFIHR-VPYWIRILICVALSAAGMLLVAFSP-------------------SVWVRLLGVVLASLSSG 127 (402)
T ss_pred HHHHHHHHHHHhHhhhhh-ccchHHHHHHHHHHHHHHhheeecc-------------------chhHHHHHHHHHhhhhh
Confidence 334455556677788888 5544434455666777776655432 34566788889999988
Q ss_pred CcccchhhhhcccCC
Q 022513 140 GNRGTLPALGAGQFD 154 (296)
Q Consensus 140 ~~~~~~~~~~~e~~~ 154 (296)
.......++.+ .++
T Consensus 128 ~GE~tfL~lt~-~y~ 141 (402)
T PF02487_consen 128 LGEVTFLSLTH-FYG 141 (402)
T ss_pred hhHHHHHHHHH-hcC
Confidence 88877777644 455
No 264
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.34 E-value=12 Score=35.63 Aligned_cols=91 Identities=11% Similarity=0.009 Sum_probs=56.6
Q ss_pred HHHHHHHhHHHHHhhh--cCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC---CcCCcchHHHHHHHHHHHHH
Q 022513 62 GSTFLLCLVGGFISDT--YLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKS---SCLKGAIAAYFYGSLYLYSL 136 (296)
Q Consensus 62 ~~~~~~~l~~G~laDr--~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~g~ 136 (296)
.+..++.+..+.+++| .+||++++.++..+..++.++..+.. |...| ...+ .-....+.....+.-++.|+
T Consensus 290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~dap--~~~t~~~~~~~~~~~~~~~ii~~l~G~ 365 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PNDAP--LRPTDSPPLLFTPSYYLALIIGFLLGF 365 (461)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cccCC--CCCCcccccccccchhHHHHHHHHHhh
Confidence 3445556666677654 16999999999999888877665542 21111 0000 00012233344445567888
Q ss_pred cCcCcccchhhhhcccCCCC
Q 022513 137 GCGGNRGTLPALGAGQFDEN 156 (296)
Q Consensus 137 g~g~~~~~~~~~~~e~~~~~ 156 (296)
+-+.........+++.+|++
T Consensus 366 ~D~~~~t~~~~ii~~~~~~~ 385 (461)
T KOG3098|consen 366 GDACFNTQRYVIIALLYPDD 385 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 88888899999999999643
No 265
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=89.69 E-value=0.79 Score=43.63 Aligned_cols=190 Identities=14% Similarity=0.082 Sum_probs=97.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHH-HHHH-HHhHHHHHhhhcCch---hHHHHH
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFG-STFL-LCLVGGFISDTYLSR---FATCLV 87 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~-~~l~~G~laDr~~GR---r~~i~~ 87 (296)
.|+.++.++...+...+.+..+.+-.+......++++.+++....+.... .+.+ ..+...+..-| +|+ |+.+..
T Consensus 260 d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~-l~~i~~r~~~~~ 338 (488)
T KOG2325|consen 260 DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTR-LGKIDKRRIILL 338 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHH-hhhhccceeeee
Confidence 45666666666677777766656656666666778877766554443322 2222 22233333333 333 444444
Q ss_pred HHHHHHHHHHHHHHH-hhcc-CCCC-----CCCCC---CCcCCcc--hHHHHHHH-HHHHHHcCcCcccchhhhhcccCC
Q 022513 88 FGTLEVLSLVMLTIQ-AYSK-SLHP-----PDCGK---SSCLKGA--IAAYFYGS-LYLYSLGCGGNRGTLPALGAGQFD 154 (296)
Q Consensus 88 ~~~~~~ig~~~~~~~-~~~~-~~~~-----~~~~~---~~~~~~~--~~~~~~~~-~~l~g~g~g~~~~~~~~~~~e~~~ 154 (296)
++.+......+.... ...+ ..+. ..|.. +-|.... +...++.+ -++.|.+.-.......++-+|+..
T Consensus 339 g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLg 418 (488)
T KOG2325|consen 339 GFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILG 418 (488)
T ss_pred hHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhC
Confidence 433332222221111 0000 0000 11111 1244432 22333333 234555555566677788889888
Q ss_pred CCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513 155 ENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 155 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~ 209 (296)
+.+ .+...+++.....++-.+||++...+....|.++.+.+.....++.
T Consensus 419 p~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~ 467 (488)
T KOG2325|consen 419 PRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV 467 (488)
T ss_pred Ccc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence 765 3444445555677888888888877777777776665555444433
No 266
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=89.51 E-value=5.8 Score=35.95 Aligned_cols=115 Identities=6% Similarity=-0.099 Sum_probs=67.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHH
Q 022513 12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL 91 (296)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~ 91 (296)
+.-|.++.+...-+. .+..|.-..++......++|..+. +.+ ........++.+.+-.+ +|-|+++.++...
T Consensus 26 ~~~knv~i~s~~fl~-~f~a~~gl~nlq~~vn~~lg~~sl--~~~----y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~ 97 (390)
T KOG3097|consen 26 GILKNVLILSIAFLL-TFTAYLGLQNLQTSVNYDLGTVSL--GAL----YLSLIDSSMFMPLLIRF-LGTKWTMVLAVFP 97 (390)
T ss_pred chhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhcCcccchh--hhh----hHHHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 344666655544444 444455556777666554443322 111 12223334444456666 8999999988777
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCC
Q 022513 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFD 154 (296)
Q Consensus 92 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~ 154 (296)
+..-... +.. ..+..++-+-...|+|.+..++..-+|++++-.
T Consensus 98 Y~lyiA~----Nl~----------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 98 YALYIAA----NLE----------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred HHHHHHh----hcc----------------hhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 6543221 111 134456666678899999999888888887655
No 267
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=87.35 E-value=25 Score=32.80 Aligned_cols=31 Identities=19% Similarity=0.091 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCcCcccchhhhhcccCCC
Q 022513 124 AAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE 155 (296)
Q Consensus 124 ~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~ 155 (296)
....++..++.+++.|..+..+....++ +|.
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~ 147 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGL-FPS 147 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhc-CCH
Confidence 3444555667788888888888876666 553
No 268
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=85.88 E-value=11 Score=35.10 Aligned_cols=61 Identities=7% Similarity=-0.081 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 022513 123 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYV 189 (296)
Q Consensus 123 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l 189 (296)
+.+..++..+..|+..|....+....+.|..++++ |.-..+....+-++|..+|.+++-++
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34555566777888889888999888888766433 45555555566677777766655444
No 269
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=84.27 E-value=1.7 Score=40.86 Aligned_cols=131 Identities=12% Similarity=-0.011 Sum_probs=64.2
Q ss_pred hhcC---CChhhHHHHHHHHHHHHHHHHhHHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcC
Q 022513 44 NEMH---FDIAGASNTLTNFFGSTFLLCLVGG-FISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCL 119 (296)
Q Consensus 44 ~~l~---~s~~~a~~~~~~~~~~~~~~~l~~G-~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 119 (296)
+..+ +|+...+.+..+..++..++..+.. ++.|+ .-|+++..+.++..+..+.......-.... .|-
T Consensus 245 ~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~--~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~---~Gi---- 315 (433)
T PF03092_consen 245 DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNW--SWRRIFVVTTLVSVLASLFDLLLVTRWNLD---LGI---- 315 (433)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhcccEEEEEEEeee---eCc----
Confidence 3455 7777666655555555555554443 34443 556666666555444332211110000000 000
Q ss_pred CcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 022513 120 KGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI 191 (296)
Q Consensus 120 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 191 (296)
+.. ...+.--++..+..+...-+...+.+|+.|+.. -++.+++.....|+|..++..++..+.+
T Consensus 316 -~d~-~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~ 379 (433)
T PF03092_consen 316 -PDQ-WFALGDTILEEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLME 379 (433)
T ss_pred -CCe-EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 111111122333333333444567889999765 3677777777778888777777666543
No 270
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=83.17 E-value=16 Score=26.93 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHH
Q 022513 54 SNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLS 95 (296)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig 95 (296)
+.......++..+++.+.+++.|. .|.+..+.+...+.+++
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 90 GLMSAGIALGPLLGPPLGGVLAQF-LGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHhHHHHHHHhHHhHHHHhcc-cchHHHHHHHHHHHHHH
Confidence 444555667788888999999998 68777766655554444
No 271
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=79.38 E-value=47 Score=32.01 Aligned_cols=109 Identities=7% Similarity=-0.066 Sum_probs=55.3
Q ss_pred HHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 022513 27 ENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSK 106 (296)
Q Consensus 27 ~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~ 106 (296)
.+.+++-+.++...--++.-+-.+.-.|.+-.+..+.+++..+..|++-.+ +.|.--+.++.+-.+-|.+++..+.
T Consensus 274 a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~-w~~~~~l~l~v~s~~~~gll~~m~~--- 349 (511)
T TIGR00806 274 NSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIR-WARWSKLLIAVVSAIQAGLVFWMSQ--- 349 (511)
T ss_pred HhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHHHHHHhhhhhc---
Confidence 344555555555443322212111133455556677778889999999777 5543333333333332322222211
Q ss_pred CCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccC
Q 022513 107 SLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQF 153 (296)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~ 153 (296)
+.+.+..+++-++.+.......+....=++...
T Consensus 350 --------------t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L 382 (511)
T TIGR00806 350 --------------SHDIWVLYVTYVLFRGIYQFLVPIATFQIASSL 382 (511)
T ss_pred --------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235677777777666555554444444444433
No 272
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=77.26 E-value=8.6 Score=36.40 Aligned_cols=79 Identities=10% Similarity=-0.112 Sum_probs=49.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhh-cCCChh----------------hHHHHHHHHHHHHHHHHhHHHH
Q 022513 11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNE-MHFDIA----------------GASNTLTNFFGSTFLLCLVGGF 73 (296)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~s~~----------------~a~~~~~~~~~~~~~~~l~~G~ 73 (296)
+..+|.++.++...++...+.+...-+-..++-++ ++=|+. ...+-..+..+...+.+..--+
T Consensus 275 ~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~ 354 (498)
T KOG0637|consen 275 KVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEK 354 (498)
T ss_pred hhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 34678899999888888888776665555555332 222211 1123345566677778888899
Q ss_pred HhhhcCchhHHHHHHHH
Q 022513 74 ISDTYLSRFATCLVFGT 90 (296)
Q Consensus 74 laDr~~GRr~~i~~~~~ 90 (296)
+.|+ +|-|+.++.+..
T Consensus 355 l~~~-~g~r~~y~~~~~ 370 (498)
T KOG0637|consen 355 LSRK-FGTRKRYWGGVN 370 (498)
T ss_pred HHHh-cCcceEEeehhH
Confidence 9999 794444443333
No 273
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.59 E-value=12 Score=27.03 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCceee
Q 022513 169 NFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRI 222 (296)
Q Consensus 169 ~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~ 222 (296)
-++++...+|+++|. +.|+..+..+|. .+ +.++..++.+++.++-.|.|+.
T Consensus 26 r~~q~ilti~aiVg~-i~Gf~~Qqls~t-vy-~vg~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 26 RFQQLILTIGAIVGF-IYGFAQQQLSVT-VY-IVGAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHH-HH-HHHHHHHHHHHhcCCCchhhhc
Confidence 355667888998885 455666666653 23 3333333445555566666654
No 274
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=75.51 E-value=78 Score=30.31 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=44.8
Q ss_pred cCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHH
Q 022513 137 GCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLI 208 (296)
Q Consensus 137 g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~ 208 (296)
........--..+.|++|+.+ + |..+++-++...++...+..++.+.+.+..||..+..+.-++.++
T Consensus 279 ~~nlve~~~k~~v~~~~p~~~--~---~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 279 SINLVEVTWKSKLKAQYPSPN--E---YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHCCCHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444555577788887543 2 678888877777777765555668888889998776655554444
No 275
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.67 E-value=25 Score=26.24 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhHHHHHhhhcCchhHHHHHH
Q 022513 59 NFFGSTFLLCLVGGFISDTYLSRFATCLVF 88 (296)
Q Consensus 59 ~~~~~~~~~~l~~G~laDr~~GRr~~i~~~ 88 (296)
.-.+.+.+.....||+-|+|+|-++-.++.
T Consensus 50 sefIsGilVGa~iG~llD~~agTsPwglIv 79 (116)
T COG5336 50 SEFISGILVGAGIGWLLDKFAGTSPWGLIV 79 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 333444555566789999998988765543
No 276
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=67.38 E-value=1.2e+02 Score=29.17 Aligned_cols=40 Identities=3% Similarity=0.098 Sum_probs=30.2
Q ss_pred hhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 022513 146 PALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI 191 (296)
Q Consensus 146 ~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 191 (296)
..+..|.++.++ ..+++..+..+.|+|..++..+..++.+
T Consensus 166 W~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776443 4688888888999999998887776655
No 277
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=65.41 E-value=50 Score=31.19 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 022513 125 AYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGV 183 (296)
Q Consensus 125 ~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 183 (296)
+..++..++.|+..|-..+....+..+..++ ++|+..|...+ ++.++|..+|.
T Consensus 373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~---~e~e~aG~~~~---~~l~~Gl~~Gs 425 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDP---HEREVAGALMV---IFLLVGLALGA 425 (437)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCH---HHHHHHHHHHH---HHHHHHHHHHH
Confidence 4555667889999998877777777777654 34333344333 34555555544
No 278
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=64.33 E-value=17 Score=25.27 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCcee
Q 022513 171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYR 221 (296)
Q Consensus 171 ~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~ 221 (296)
++....+++.+| .+.||+.++ .+..+++.++..++++++.++-.|.|.
T Consensus 13 ~~~il~~~~iis-fi~Gy~~q~--~~~~~~~~~~g~~~~~lv~vP~Wp~y~ 60 (76)
T PF06645_consen 13 MQYILIISAIIS-FIVGYITQS--FSYTFYIYGAGVVLTLLVVVPPWPFYN 60 (76)
T ss_pred HHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHhheeCCcHhhc
Confidence 344566667666 456777655 345666655555566666666555553
No 279
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=61.97 E-value=50 Score=30.88 Aligned_cols=108 Identities=11% Similarity=0.020 Sum_probs=60.1
Q ss_pred hHHHHhhhhcCC---ChhhHHHHHHH-HHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 022513 37 SMVLYFKNEMHF---DIAGASNTLTN-FFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPD 112 (296)
Q Consensus 37 ~l~~yl~~~l~~---s~~~a~~~~~~-~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~ 112 (296)
..|.+..+..+- +..-.-..+.+ ++....+|.+...++-+. +||+.... .++-.+-.-++.+++..| . +.
T Consensus 265 iFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~l~i~-v~lR~lfiPlF~~cn~~~-~-~v- 338 (406)
T KOG1479|consen 265 IFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWP--DPRKLTIP-VLLRLLFIPLFLLCNYPP-L-PV- 338 (406)
T ss_pred ecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCC--CCceehHH-HHHHHHHHHHHHHhccCC-C-Cc-
Confidence 445555443222 22333444555 788888888877777776 56655443 333333222333332211 0 00
Q ss_pred CCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCC
Q 022513 113 CGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDEND 157 (296)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~ 157 (296)
.-.+-++++....+.|+..|=..+....+..++.++++
T Consensus 339 -------~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e 376 (406)
T KOG1479|consen 339 -------VFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSE 376 (406)
T ss_pred -------eecCchHHHHHHHHHHhccchHhhheehhcCCCCChHH
Confidence 01123566777788999999888888888888877543
No 280
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=53.96 E-value=1.9e+02 Score=27.12 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHH
Q 022513 53 ASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (296)
Q Consensus 53 a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ 93 (296)
.|.+-.+..+.+.++.+..|++..+ +.+..-+.++..-.+
T Consensus 287 NG~VeA~~tllgA~~al~~g~v~~~-w~~~~~l~l~~~S~l 326 (412)
T PF01770_consen 287 NGAVEAASTLLGAIAALLAGYVKVN-WDRWGELALGVFSLL 326 (412)
T ss_pred chHHHHHHHHHHHHHHHHHhHhhcc-hHHHHHHHHHHHHHH
Confidence 4566667777888889999999777 577555544444333
No 281
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=53.31 E-value=57 Score=20.77 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHHHHHhhhcCchhHHHHH
Q 022513 60 FFGSTFLLCLVGGFISDTYLSRFATCLV 87 (296)
Q Consensus 60 ~~~~~~~~~l~~G~laDr~~GRr~~i~~ 87 (296)
..+...+.....|+..|+++|.++...+
T Consensus 9 ~~~~~i~~g~~~G~~lD~~~~t~p~~~~ 36 (55)
T PF09527_consen 9 TMAAPILVGFFLGYWLDKWFGTSPWFTL 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 3445555666778888988898655443
No 282
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=52.66 E-value=88 Score=28.44 Aligned_cols=76 Identities=11% Similarity=-0.012 Sum_probs=54.7
Q ss_pred HHHHHHHHHhHHhHHHHhhhhcCCC-hhhHH----HHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHH
Q 022513 25 ALENMGFIANGISMVLYFKNEMHFD-IAGAS----NTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML 99 (296)
Q Consensus 25 ~~~~~~~~~~~~~l~~yl~~~l~~s-~~~a~----~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~ 99 (296)
.+..++.-++.+++.++..++++-+ ..+-. +.....+++..++....+++.|+ .|....+.+..+.++++.+.+
T Consensus 41 ~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~-~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 41 ALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQN-YGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC-S-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccc-cchhhhhhHHHHHHHHHHHHH
Confidence 3456666678899999999888765 33322 34445566777777888999999 699888888888888877665
Q ss_pred HH
Q 022513 100 TI 101 (296)
Q Consensus 100 ~~ 101 (296)
..
T Consensus 120 ~~ 121 (372)
T PF00854_consen 120 LS 121 (372)
T ss_dssp HC
T ss_pred Hh
Confidence 54
No 283
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=50.10 E-value=29 Score=30.69 Aligned_cols=72 Identities=8% Similarity=0.034 Sum_probs=48.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHH---------hhhcCchh
Q 022513 12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFI---------SDTYLSRF 82 (296)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~l---------aDr~~GRr 82 (296)
+.|+.+...+ ..+.+........+++..|+++ .|+++...+.++....+.-++..++.|.. -|| +|||
T Consensus 15 gr~svf~yGv-GHmlNDitAScWFTYlllfltq-iglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr-~G~~ 91 (412)
T KOG4830|consen 15 GRTSVFAYGV-GHMLNDITASCWFTYLLLFLTQ-IGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDR-IGRR 91 (412)
T ss_pred cceeeeeech-hHHHhhHHHHHHHHHHHHHHHH-hcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhh-hcce
Confidence 3455444433 3455555555666788888875 56777767777777788888888887744 478 7998
Q ss_pred HHHH
Q 022513 83 ATCL 86 (296)
Q Consensus 83 ~~i~ 86 (296)
+...
T Consensus 92 ~~wh 95 (412)
T KOG4830|consen 92 MSWH 95 (412)
T ss_pred eeee
Confidence 7643
No 284
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=48.61 E-value=1.4e+02 Score=29.05 Aligned_cols=249 Identities=10% Similarity=0.049 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHhhhh--cCCChhhHHHHHHH---HHHHHHHHHhHHHHHhhhcCchhHHHHHHHH
Q 022513 16 ACTFVFVLSALENMGFIANGISMVLYFKNE--MHFDIAGASNTLTN---FFGSTFLLCLVGGFISDTYLSRFATCLVFGT 90 (296)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~a~~~~~~---~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~ 90 (296)
.+.++++..+++..- .|+..-..+++-+. -+.|-++.+....+ +++=..-.+++=+....| +||||+-++ =+
T Consensus 1 n~~lL~~LY~lQGiP-~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~-~GRRKSWii-P~ 77 (544)
T PF13000_consen 1 NIALLVLLYFLQGIP-LGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKR-IGRRKSWII-PI 77 (544)
T ss_pred CeeHHHHHHHHcCcc-cccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccc-cCCcchhhh-HH
Q ss_pred HHHHHHHHHHHHhhc----------------cCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCcccchhhhhcccCC
Q 022513 91 LEVLSLVMLTIQAYS----------------KSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFD 154 (296)
Q Consensus 91 ~~~ig~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~ 154 (296)
=+++|..++.++... +..... ......+....++.-+-.+-.--++-...-.+..
T Consensus 78 Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~---------~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls 148 (544)
T PF13000_consen 78 QYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVN---------NITIKFLTWFFFILVFLCATQDIAVDGWALTMLS 148 (544)
T ss_pred HHHHHHHHHHHHhccchhhcccccchhhhcCCCCccc---------ccchhHHHHHHHHHHHHHccCCceeehhhhhhcC
Q ss_pred CCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc----------------cchhHHHHHHHHHHHHHHHHHHhcCC
Q 022513 155 ENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID----------------QGWWLGFLISSVATLIGLIALAIGKP 218 (296)
Q Consensus 155 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~----------------~gw~~~f~i~~~~~~~~~i~~~~~~~ 218 (296)
+++ ++-+......+.+.|.+++..+.-.+.+. .+-..-..+.+...++..+...+..+
T Consensus 149 ~~n------~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~ 222 (544)
T PF13000_consen 149 PEN------VGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKK 222 (544)
T ss_pred hhh------cchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEee
Q ss_pred ceeecCCCCChhhhhhhhhccCCCCCCCCCCCCCCcccccccccccCCccccceeeecceeeeeccchhhhhhhhccC
Q 022513 219 FYRIQQPGESPLVRVAQVPHSLPIPFLFGPKSLKPLEMILKYTRHKINIYKLKKTQSEEDYIFFSLEWSPILKSYIII 296 (296)
Q Consensus 219 ~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (296)
+.... ...+..++.+.++.++.+...++.++....-++...-.+--|.++.+-=+|=...++++
T Consensus 223 E~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~i 286 (544)
T PF13000_consen 223 EKPHS--------------ESLPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIII 286 (544)
T ss_pred ccccc--------------ccCccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHH
No 285
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=45.75 E-value=1.7e+02 Score=27.91 Aligned_cols=78 Identities=4% Similarity=0.000 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 022513 20 VFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVM 98 (296)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~ 98 (296)
.+...+-+-++.|+-....|.-.-..+|++.++...+++.....+.+++++--....+ .|-|--...++....++...
T Consensus 18 ~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~-~g~~lP~~lG~sFafi~p~i 95 (451)
T COG2233 18 LLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGP-GGSGLPSYLGSSFAFVAPMI 95 (451)
T ss_pred HHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccC-cccCCCeeEechHHHHHHHH
Confidence 4445666677778877777777778999999999999998888888888776653333 44333333344444444433
No 286
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=44.56 E-value=47 Score=32.62 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=61.7
Q ss_pred chHHHHHHHHHHHHHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc----chh-
Q 022513 122 AIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQ----GWW- 196 (296)
Q Consensus 122 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~----gw~- 196 (296)
-+..+.+--.+++|++.........-+.=+|+|+.- |+...+++.....+|..++..+...+.... +|-
T Consensus 456 mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sM------kS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~~~~w~~ 529 (571)
T KOG1237|consen 456 MSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESM------KSVATALWLLTVAVGNYLSSVLVSLVQFSTGKAAEWLG 529 (571)
T ss_pred eeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 355666677788898887777776666667777543 677778888889999998887764332221 232
Q ss_pred ----------HHHHHHHHHHHHHHHHHHhcCCceeec
Q 022513 197 ----------LGFLISSVATLIGLIALAIGKPFYRIQ 223 (296)
Q Consensus 197 ----------~~f~i~~~~~~~~~i~~~~~~~~~~~~ 223 (296)
.-+++.+....+-...+....++|..+
T Consensus 530 ~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~ 566 (571)
T KOG1237|consen 530 FANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYK 566 (571)
T ss_pred hhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeec
Confidence 123344445555566666666666553
No 287
>COG3619 Predicted membrane protein [Function unknown]
Probab=44.43 E-value=2e+02 Score=24.56 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=17.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHhHHHHhhh
Q 022513 13 GFRACTFVFVLSALENMGFIANGISMVLYFKN 44 (296)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~ 44 (296)
.+-.+.+.+...+.+.++|.........+++.
T Consensus 10 l~l~~lLa~~aGfvDa~~f~~~gg~F~s~~TG 41 (226)
T COG3619 10 LRLGLLLALVAGFVDAFGFLHLGGVFVSFMTG 41 (226)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCchhhheec
Confidence 33444555556667777765554444554443
No 288
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=43.42 E-value=2.9e+02 Score=26.08 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHcCcCcccchhhhhcccCCC
Q 022513 123 IAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDE 155 (296)
Q Consensus 123 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~e~~~~ 155 (296)
.....++..++.|++.|..++...++.+ .+|+
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~ 136 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPS 136 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCH
Confidence 3455556667788888888888888766 4663
No 289
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=40.60 E-value=3.4e+02 Score=26.13 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=41.8
Q ss_pred HHcCcCcccchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHH
Q 022513 135 SLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIG 209 (296)
Q Consensus 135 g~g~g~~~~~~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~gw~~~f~i~~~~~~~~ 209 (296)
++........--..+.+++|+.+ + +..+++-++...++-..+-..+++.+....||..+-.+.-+.+++.
T Consensus 293 gi~inLvE~~wK~~lk~~~~~~~--~---ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit 362 (491)
T PF03219_consen 293 GISINLVEVVWKSQLKQLYPDPN--D---YSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILIT 362 (491)
T ss_pred HHHHHHHHHHHHHHHHHHCCCch--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHH
Confidence 34444455555666778888653 2 5566666655544444444456677778899997766654444433
No 290
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=39.20 E-value=3.1e+02 Score=25.21 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=31.4
Q ss_pred HHHHcCcCcccchhhhhcccCCCCChh-hhhhhhhhHHHHHHHHHHHHHHHH
Q 022513 133 LYSLGCGGNRGTLPALGAGQFDENDPK-GAKALASYFNFYLFATTLAAMIGV 183 (296)
Q Consensus 133 l~g~g~g~~~~~~~~~~~e~~~~~~~~-~~~~r~~~~~~~~~~~~~G~~i~~ 183 (296)
+.|+....+..+++.++-.+.|.-++. +....|..|+.+..+..+|+.+-+
T Consensus 248 ~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~ 299 (354)
T PF05631_consen 248 LLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFS 299 (354)
T ss_pred HHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 466666777777777777776643321 111257777777667777776654
No 291
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=38.07 E-value=1.6e+02 Score=21.74 Aligned_cols=26 Identities=15% Similarity=-0.009 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHhhhcCchhHHH
Q 022513 60 FFGSTFLLCLVGGFISDTYLSRFATC 85 (296)
Q Consensus 60 ~~~~~~~~~l~~G~laDr~~GRr~~i 85 (296)
..++..+...+.|..-|+++|-.+.+
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~ 76 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSW 76 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHH
Confidence 34445555666777788878865533
No 292
>PRK10263 DNA translocase FtsK; Provisional
Probab=36.78 E-value=3.2e+02 Score=29.86 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=6.8
Q ss_pred HHHhHHHHHhhh
Q 022513 66 LLCLVGGFISDT 77 (296)
Q Consensus 66 ~~~l~~G~laDr 77 (296)
.+..+|.|++|.
T Consensus 63 l~GiVGA~LAD~ 74 (1355)
T PRK10263 63 LGGMPGAWLADT 74 (1355)
T ss_pred ccchHHHHHHHH
Confidence 344556666664
No 293
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=36.46 E-value=2.4e+02 Score=28.60 Aligned_cols=52 Identities=10% Similarity=-0.020 Sum_probs=30.4
Q ss_pred HHHhh---hcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcCc
Q 022513 72 GFISD---TYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGN 141 (296)
Q Consensus 72 G~laD---r~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~ 141 (296)
+-++| ++-||.+-+.++.+.+.++++...+.. + ..+.+..+.++.+++.++.
T Consensus 44 ~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~--~----------------~p~lf~~~l~~~tf~~~ml 98 (704)
T TIGR01666 44 AALVDLDDRLTGRLKNVIFTLICFSIASFSVELLF--G----------------KPWLFAVGLTVSTFGFIML 98 (704)
T ss_pred hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh--c----------------CcHHHHHHHHHHHHHHHHH
Confidence 44555 444777778777777776665544432 1 2355666666666665443
No 294
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=36.33 E-value=2.3e+02 Score=28.76 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=28.5
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcCCcchHHHHHHHHHHHHHcCcC
Q 022513 76 DTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGG 140 (296)
Q Consensus 76 Dr~~GRr~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~ 140 (296)
|++-||.+-++++.+.+.++++..-+.. + ..+.+..+.++.+++.++
T Consensus 51 ~~~~~R~~~l~it~~~f~i~sl~v~ll~--~----------------~p~~~~~~l~~~tf~~~m 97 (701)
T TIGR01667 51 DRLTGRLKNLIITLSCFSIASFLVQLLF--P----------------KPWLFPFLLTLLTFGFIL 97 (701)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHh--c----------------chHHHHHHHHHHHHHHHH
Confidence 3444778888888887777766554432 1 234566666666666544
No 295
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=34.89 E-value=4.3e+02 Score=25.58 Aligned_cols=167 Identities=7% Similarity=-0.021 Sum_probs=83.8
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCC---hhhHHHHHHHHHH-HHHHHHhHHHHHhhhcCchhHHH
Q 022513 10 QKGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFD---IAGASNTLTNFFG-STFLLCLVGGFISDTYLSRFATC 85 (296)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s---~~~a~~~~~~~~~-~~~~~~l~~G~laDr~~GRr~~i 85 (296)
++.-++.++.+.+..++..+.++.+. -+++.+.++ +.....+-..... ++.+..++-+++.++ +-|.+++
T Consensus 22 ~r~E~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF 95 (509)
T COG3202 22 RRYELKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVF 95 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHH
Confidence 33445666666666666666543221 234444333 4444444444444 567778888999999 6999887
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC---CCCCCC-C---CCcC-C---------cchHHHHHHHHHHHHHcCcCcccchhhh
Q 022513 86 LVFGTLEVLSLVMLTIQAYSKSL---HPPDCG-K---SSCL-K---------GAIAAYFYGSLYLYSLGCGGNRGTLPAL 148 (296)
Q Consensus 86 ~~~~~~~~ig~~~~~~~~~~~~~---~~~~~~-~---~~~~-~---------~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 148 (296)
.+-+...+.-.++++..- .|.- ++.+-. + +.-+ + .-+...+++.-=+.| .=...-....+
T Consensus 96 ~~~~~~F~~fF~LFa~Vi-~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWg--slV~S~lFw~f 172 (509)
T COG3202 96 YIILGFFLGFFALFAFVI-YPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWG--SLVLSLLFWQF 172 (509)
T ss_pred HHHHHHHHHHHHHHHHHH-hccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 766555554444444322 1211 110000 0 0000 0 000111111110000 00000112244
Q ss_pred hcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 022513 149 GAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFI 191 (296)
Q Consensus 149 ~~e~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 191 (296)
..|+...++ ..+++..++...|++..++..+..++.+
T Consensus 173 aNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 173 ANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556655332 5688999999999999999888877754
No 296
>PRK02237 hypothetical protein; Provisional
Probab=33.78 E-value=1.3e+02 Score=22.42 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHHHHHHHHHHHHH
Q 022513 51 AGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVML 99 (296)
Q Consensus 51 ~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~~~~~~ig~~~~ 99 (296)
+.++-+...+.....+.+++.+|..|. .-.-+-=.++..++++|..+.
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg-~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDG-VRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcC-cCCChhHHHhHHHHHHhHHHh
Confidence 346777888888888899999999998 455555567777777776554
No 297
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=31.49 E-value=80 Score=22.28 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=4.9
Q ss_pred HHHHHHHHHhcCCceeec
Q 022513 206 TLIGLIALAIGKPFYRIQ 223 (296)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~ 223 (296)
.+++.+++......|+..
T Consensus 16 ~iiaIvvW~iv~ieYrk~ 33 (81)
T PF00558_consen 16 LIIAIVVWTIVYIEYRKI 33 (81)
T ss_dssp HHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444445555543
No 298
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=29.22 E-value=4.2e+02 Score=23.70 Aligned_cols=27 Identities=7% Similarity=-0.042 Sum_probs=15.2
Q ss_pred HHhHHhHHHHhhhhcCCChhhHHHHHH
Q 022513 32 IANGISMVLYFKNEMHFDIAGASNTLT 58 (296)
Q Consensus 32 ~~~~~~l~~yl~~~l~~s~~~a~~~~~ 58 (296)
+|+.++-..-+.+..|+.....++.++
T Consensus 41 ~g~~s~SlaLLADa~Hml~D~~al~la 67 (296)
T COG1230 41 GGLLTGSLALLADALHMLSDALALLLA 67 (296)
T ss_pred HHHHhccHHHHHhHHHHHHHHHHHHHH
Confidence 345555555566777776655554433
No 299
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=28.75 E-value=2e+02 Score=22.77 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=24.9
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHhcCCceeec
Q 022513 187 VYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQ 223 (296)
Q Consensus 187 ~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~ 223 (296)
.+-....||.+..++...+.+++.++++=..|+|+..
T Consensus 53 m~~spy~G~~s~~~ftv~fv~m~~~llfDI~P~YrfE 89 (155)
T PF10777_consen 53 MYYSPYFGLGSVWGFTVFFVVMAAFLLFDIKPRYRFE 89 (155)
T ss_pred HHhcchhhhHHHHHHHHHHHHHHHHHHhhccceeeec
Confidence 3445567777766666666666666666678888764
No 300
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=28.50 E-value=96 Score=28.63 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=34.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCCh
Q 022513 12 GGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDI 50 (296)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~ 50 (296)
-.||-+++++...|..++.++|+.-|+..|..+++..+.
T Consensus 60 ~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~ 98 (400)
T KOG3827|consen 60 LKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDP 98 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCC
Confidence 468889999999999999999999999999999887765
No 301
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=26.46 E-value=3.3e+02 Score=21.58 Aligned_cols=42 Identities=7% Similarity=0.092 Sum_probs=24.4
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhHHHHHhhhcCchhHHHHHH
Q 022513 46 MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVF 88 (296)
Q Consensus 46 l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GRr~~i~~~ 88 (296)
+|++....-....+..+.-.++-+++++++|+ +|+-..+.+.
T Consensus 67 iGi~EkslL~sA~LvYi~PL~~l~v~~~La~~-L~~~e~~~~~ 108 (150)
T COG3086 67 LGIEEKSLLKSALLVYIFPLVGLFLGAILAQY-LFFSELIVIF 108 (150)
T ss_pred EccCcccHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHH
Confidence 45544333222333444555667778889998 6877665543
No 302
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=21.95 E-value=2.9e+02 Score=22.09 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 022513 164 LASYFNFYLFATTLAAMIG 182 (296)
Q Consensus 164 r~~~~~~~~~~~~~G~~i~ 182 (296)
-|++.+|-.+-.|++-+..
T Consensus 128 ~GSllG~~e~~~N~~r~~~ 146 (153)
T PF11947_consen 128 EGSLLGWEEFKRNWGRMWE 146 (153)
T ss_pred CCCcccHHHHHHhHHHHHH
Confidence 4899999888888877643
No 303
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=21.88 E-value=1.9e+02 Score=23.89 Aligned_cols=19 Identities=5% Similarity=0.314 Sum_probs=15.2
Q ss_pred HHHHHHHHHhHHHHHhhhc
Q 022513 60 FFGSTFLLCLVGGFISDTY 78 (296)
Q Consensus 60 ~~~~~~~~~l~~G~laDr~ 78 (296)
|.++..+++.+.|+++||.
T Consensus 91 yL~gfi~aa~l~G~l~~k~ 109 (184)
T COG1268 91 YLIGFIIAAFLIGLLAEKI 109 (184)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5566677888999999993
No 304
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=21.82 E-value=6.2e+02 Score=23.14 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=28.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhHHHH----HhhhcCchhHHHHHHHHHHHHHHHHHH
Q 022513 47 HFDIAGASNTLTNFFGSTFLLCLVGGF----ISDTYLSRFATCLVFGTLEVLSLVMLT 100 (296)
Q Consensus 47 ~~s~~~a~~~~~~~~~~~~~~~l~~G~----laDr~~GRr~~i~~~~~~~~ig~~~~~ 100 (296)
..+...++.+.+..-+...+...+.+. +.+| .++++.+ +.++.++|..++.
T Consensus 101 ~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er-~~~~~~~--G~~l~~~Gv~ll~ 155 (358)
T PLN00411 101 YSNPTLASAISNITPALTFILAIIFRMEKVSFKER-SSVAKVM--GTILSLIGALVVI 155 (358)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHHhchhhhccc-ccHHHHH--HHHHHHHHHHHHH
Confidence 355666666665554444443333321 3788 6777654 5666667766544
No 305
>PRK11469 hypothetical protein; Provisional
Probab=20.94 E-value=4.8e+02 Score=21.47 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHhHHHHhhhhcCCChhhHHHHHHHHHHHH-HHHHhHHHHHhhhcCchhHHHHHHHHHH
Q 022513 14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGST-FLLCLVGGFISDTYLSRFATCLVFGTLE 92 (296)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~-~~~~l~~G~laDr~~GRr~~i~~~~~~~ 92 (296)
++..+.+......+.++. |+... -.|.+.-.....+.+.+... ..|..++.+++++ +|||.-++-+.++.
T Consensus 105 ~~~~l~LaiAtSiDAlav-Gi~~~-------~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~-~g~~a~~lgG~iLI 175 (188)
T PRK11469 105 FWLLVTTAIATSLDAMAV-GVGLA-------FLQVNIIATALAIGCATLIMSTLGMMVGRFIGSI-IGKKAEILGGLVLI 175 (188)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 344554455555555542 33211 12344444444444444333 3344455566666 78888888788777
Q ss_pred HHHHHHH
Q 022513 93 VLSLVML 99 (296)
Q Consensus 93 ~ig~~~~ 99 (296)
.+|.-.+
T Consensus 176 ~iGi~il 182 (188)
T PRK11469 176 GIGVQIL 182 (188)
T ss_pred HHHHHHH
Confidence 7775543
Done!