Query 022514
Match_columns 296
No_of_seqs 231 out of 886
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:44:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_D 60S ribosomal protein L 100.0 7E-127 2E-131 892.2 22.6 291 1-291 1-297 (297)
2 4a17_M RPL5, 60S ribosomal pro 100.0 8E-126 3E-130 885.4 18.9 290 1-290 1-301 (301)
3 2zkr_n 60S ribosomal protein L 100.0 7E-125 3E-129 877.8 10.4 294 1-295 1-295 (297)
4 3iz5_Q 60S ribosomal protein L 100.0 1E-126 3E-131 891.8 -12.2 288 1-291 5-292 (304)
5 3j21_O 50S ribosomal protein L 100.0 1.2E-79 4.1E-84 550.6 4.3 195 11-251 2-197 (203)
6 1vq8_N 50S ribosomal protein L 100.0 1.4E-73 4.9E-78 506.0 11.3 184 11-251 2-185 (187)
7 3r8s_O 50S ribosomal protein L 100.0 3E-34 1E-38 237.5 6.4 107 30-171 9-115 (116)
8 1ovy_A 50S ribosomal protein L 100.0 3.3E-34 1.1E-38 238.7 4.6 112 25-172 9-120 (120)
9 3v2d_S 50S ribosomal protein L 100.0 2.9E-32 1E-36 224.6 8.4 105 27-171 7-111 (112)
10 2zjr_L 50S ribosomal protein L 100.0 1.7E-32 5.7E-37 226.7 -0.1 105 29-172 8-114 (114)
11 3bbo_Q Ribosomal protein L18; 100.0 3.3E-30 1.1E-34 223.8 -0.1 110 27-171 48-160 (161)
12 4gmn_B 60S ribosomal protein L 99.9 9.7E-25 3.3E-29 154.3 1.4 43 1-43 1-43 (49)
13 3j20_M 30S ribosomal protein S 95.9 0.024 8.2E-07 47.9 7.9 108 47-182 13-131 (137)
14 2vqe_K 30S ribosomal protein S 95.7 0.03 1E-06 46.8 7.5 101 46-181 14-123 (129)
15 3r8n_K 30S ribosomal protein S 95.1 0.041 1.4E-06 45.2 6.1 101 46-181 4-113 (117)
16 3bbn_K Ribosomal protein S11; 94.8 0.035 1.2E-06 47.1 5.3 101 46-181 27-136 (140)
17 2xzm_K RPS14E; ribosome, trans 94.6 0.028 9.5E-07 48.3 4.1 106 48-181 28-144 (151)
18 3u5c_O RP59A, 40S ribosomal pr 92.9 0.071 2.4E-06 45.1 3.6 104 48-181 14-130 (137)
19 3v7n_A Threonine synthase; ssg 52.2 8.3 0.00029 38.2 3.2 63 160-245 24-87 (487)
20 1w53_A Phosphoserine phosphata 51.3 21 0.00071 27.7 4.6 45 203-249 15-61 (84)
21 4f4f_A Threonine synthase; str 46.0 8.4 0.00029 37.8 2.1 100 160-281 23-124 (468)
22 4hyz_A Uncharacterized protein 45.2 33 0.0011 27.0 5.1 52 188-245 10-61 (114)
23 2j6y_A Phosphoserine phosphata 43.1 31 0.0011 28.1 4.7 29 221-251 32-61 (111)
24 1y6z_A Heat shock protein, put 33.4 7.7 0.00026 35.6 -0.4 41 193-234 123-166 (263)
25 2gq0_A Chaperone protein HTPG; 32.8 14 0.00049 34.6 1.3 35 199-233 124-161 (303)
26 1vb3_A Threonine synthase; PLP 32.6 24 0.00082 33.7 2.9 62 160-243 18-80 (428)
27 2r80_A Hemoglobin subunit alph 32.6 62 0.0021 25.7 5.0 71 173-248 37-111 (141)
28 1y4s_A Chaperone protein HTPG; 28.0 33 0.0011 34.6 3.0 36 199-234 352-390 (559)
29 2zs0_A Extracellular giant hem 27.8 1E+02 0.0034 24.3 5.4 72 173-248 40-117 (140)
30 2zs0_C Extracellular giant hem 27.2 95 0.0033 24.6 5.2 73 173-249 44-123 (147)
31 3ra3_A P1C; coiled coil domain 26.8 52 0.0018 20.3 2.6 16 273-288 12-27 (28)
32 1x9f_D Globin C, hemoglobin ch 25.7 1.1E+02 0.0036 24.0 5.2 72 173-248 40-117 (140)
33 3pry_A Heat shock protein HSP 24.8 28 0.00095 32.1 1.7 34 199-233 126-162 (268)
34 1yhu_D Hemoglobin B2 chain; gl 23.2 1.3E+02 0.0046 23.8 5.4 72 173-248 44-122 (149)
35 2z8u_A Tata-box-binding protei 21.2 2.1E+02 0.0073 24.6 6.6 55 42-115 40-96 (188)
36 3d1k_A Hemoglobin subunit alph 20.0 1.5E+02 0.005 23.4 5.0 71 173-248 37-112 (142)
No 1
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=100.00 E-value=6.8e-127 Score=892.16 Aligned_cols=291 Identities=55% Similarity=0.911 Sum_probs=281.0
Q ss_pred CceeeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 022514 1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYA 80 (296)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~rRRRegKTdY~~R~rli~qdk~ky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS 80 (296)
|+|||||||+|||+|||||||||||||||||+|++||+|||||||||+||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rLi~qdknKynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS 80 (297)
T 3u5e_D 1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYS 80 (297)
T ss_dssp -CCTTSCCCHHHHHTCCCCCSTTTTTCCCHHHHHHHHCCCGGGTTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEG
T ss_pred CCceeeeeccccccccccchhhhccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred cCccccccccCCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccccCccccccCCC-CCCCceEEEeecCccccCCCceE
Q 022514 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPAD-TRRPFRALLDVGLIKTTTGNRVF 159 (296)
Q Consensus 81 ~EL~k~g~k~g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~~g~~~~ve~~~-~~~~f~~vlD~Gl~r~t~G~RVf 159 (296)
+||+.+||+++++|++|||+||+|||+|||++||||++|+|++++||++|+||+.| +|+||+||||+||+|||+|||||
T Consensus 81 ~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVf 160 (297)
T 3u5e_D 81 HELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVF 160 (297)
T ss_dssp GGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHH
T ss_pred cchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccccceeccccccCCCCceeEEEecCCCccCccceeh
Confidence 99999999989999999999999999999999999999999999999999999987 69999999999999999999999
Q ss_pred EeecccccCccccccCCCccCCCCCCCCCCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHcCCCcchHHHHH
Q 022514 160 GALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALY 239 (296)
Q Consensus 160 aa~KGA~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~gi~~~~~e~~y 239 (296)
||||||+||||+||||+++|||||.|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+||
T Consensus 161 aalKGA~DgGL~IPhs~~~fpg~d~e~k~~~ae~~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~i~~~~~e~~y 240 (297)
T 3u5e_D 161 GALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIY 240 (297)
T ss_dssp HHHHHHHHHTCBCCCCSTTSSSEETTTTEECHHHHHHHHTTHHHHHHHHHTTTTCHHHHHHTTHHHHHTTCCGGGHHHHH
T ss_pred hhhhcccccCcccCCCcccccCccccccccCHHHHHHHhcCccHHHHHHHHhhhCHHHHHHHHHHHHHcCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCC-----cccccccCCCCCCHHHHHHHHHHHHHHhhccc
Q 022514 240 KKVHAAIRADPTMKKSEKPA-----PKEHKRYNLKKLTYEERKAKLVERLNALNSAV 291 (296)
Q Consensus 240 ~~~h~~Ir~~p~~~~~~k~~-----~~~~k~~~~~Klt~~qrk~rv~~k~~~~~~~~ 291 (296)
++||++||+||++++++++. +..+|+||++|||++|||+||+||++++.+.+
T Consensus 241 ~~~h~~Ir~~P~~~k~~~~k~~~~~~~~~k~~~~~klt~~qrk~~v~~k~~~~~~~~ 297 (297)
T 3u5e_D 241 TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297 (297)
T ss_dssp HHHHHHHHHCCSCCCCCCSSCHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHhCcccccccccccccccchhccccCcccCCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999887766543 24578999999999999999999999998753
No 2
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=100.00 E-value=8.3e-126 Score=885.45 Aligned_cols=290 Identities=50% Similarity=0.826 Sum_probs=280.5
Q ss_pred CceeeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 022514 1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYA 80 (296)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~rRRRegKTdY~~R~rli~qdk~ky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS 80 (296)
|+|||||||+|||+||||||||||||||||++|++||+|||||||+|+||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rlv~qdknKynspkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS 80 (301)
T 4a17_M 1 MGFVKVLKTKAYFKRFQTKYRRRREGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCAADS 80 (301)
T ss_dssp -CCCCCCSCHHHHHHCCCCCHHHHTTCCCHHHHHHHHCCCTTSCSCCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEET
T ss_pred CCceeeeeccccccccccchhhcccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred cCccccccccCCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccccCccccccCCC-CCCCceEEEeecCccccCCCceE
Q 022514 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPAD-TRRPFRALLDVGLIKTTTGNRVF 159 (296)
Q Consensus 81 ~EL~k~g~k~g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~~g~~~~ve~~~-~~~~f~~vlD~Gl~r~t~G~RVf 159 (296)
+||+.+||+++++|++|||+||+|||+|||++||||++|+|++++||++|+||++| +|+||+||||+||+|||+|||||
T Consensus 81 ~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LD~Gl~rtt~G~RVf 160 (301)
T 4a17_M 81 YELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVF 160 (301)
T ss_dssp THHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSCCCSCCCGGGTCCSSCCCBCEEECTTSCCCSSCHHH
T ss_pred ccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCccccccceeecccccCCCCceEEEEecCCcccCcccchh
Confidence 99999999989999999999999999999999999999999999999999999987 69999999999999999999999
Q ss_pred EeecccccCccccccCCCccCCCCCCC-----CCCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHc--CCCc
Q 022514 160 GALKGALDGGLDIPHSDKRFAGFSKDG-----KQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKK--GIDA 232 (296)
Q Consensus 160 aa~KGA~DgGL~IPh~~~~fpgy~~e~-----k~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~--gi~~ 232 (296)
||||||+||||+||||+++|||||.|+ ++||||+|++||+|+|||+||++|+|||||+|++|||+||++ ||+|
T Consensus 161 aalKGA~DgGL~IPhs~~~fpg~~~e~~~~~~k~~~ae~~r~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~~~i~~ 240 (301)
T 4a17_M 161 GVLKGACDGGINIPHSESRFPGYVRASDEGESSKYKPEDHKARIFGKHIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKV 240 (301)
T ss_dssp HHHHHHHHTTCBCCCCSSSSSSEEECCSSCCCEEECHHHHHHHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhcccccCcccCCCCccCCCcccccccccccccCHHHHHHHhcCccHHHHHHHhhhhCHHHHHHHHHHHHhhccCCCh
Confidence 999999999999999999999999987 999999999999999999999999999999999999999999 9999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCC---CcccccccCCCCCCHHHHHHHHHHHHHHhhcc
Q 022514 233 DGLEALYKKVHAAIRADPTMKKSEKP---APKEHKRYNLKKLTYEERKAKLVERLNALNSA 290 (296)
Q Consensus 233 ~~~e~~y~~~h~~Ir~~p~~~~~~k~---~~~~~k~~~~~Klt~~qrk~rv~~k~~~~~~~ 290 (296)
|+||+||++||++||+||++++++++ ++..+|+||++|||++|||+||+||+++|.++
T Consensus 241 ~~~e~~y~~~h~~Ir~~p~~~k~~~~~~~~~~~~k~~~~~klt~~qrk~~v~~k~~~~~~~ 301 (301)
T 4a17_M 241 DSVEKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301 (301)
T ss_dssp SCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCHHHHHHSCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhCccccccccccccccccccccCcccCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998877665 44567899999999999999999999999764
No 3
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=7.3e-125 Score=877.78 Aligned_cols=294 Identities=56% Similarity=0.939 Sum_probs=233.2
Q ss_pred CceeeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 022514 1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYA 80 (296)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~rRRRegKTdY~~R~rli~qdk~ky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS 80 (296)
|+||||+||+|||+||||||||||||||||++|+|||+|||||||||+||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkv~kn~aYf~Ryqvk~RRRReGKTdY~~R~rLi~qdknkynt~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS 80 (297)
T 2zkr_n 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYA 80 (297)
T ss_dssp ----------CCSTTCCCCCHHHHTTCSCHHHHHHHHCCCSTTCSCCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEG
T ss_pred CCceeeeeccccccccccchhhhccccchHHHHHHHHhcCCcccCCCCceEEEEEecCcEEEEEEeccCCCCEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccccCccccccCCC-CCCCceEEEeecCccccCCCceE
Q 022514 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPAD-TRRPFRALLDVGLIKTTTGNRVF 159 (296)
Q Consensus 81 ~EL~k~g~k~g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~~g~~~~ve~~~-~~~~f~~vlD~Gl~r~t~G~RVf 159 (296)
+||++|||+++++|++||||||+|||+|||++||||++|+|++++|||+|+||+.+ +|+||+||||+||++||+|||||
T Consensus 81 ~El~kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~g~~~~ve~~~~~~gi~~vvfDrGl~ryttggRVf 160 (297)
T 2zkr_n 81 HELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVF 160 (297)
T ss_dssp GGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHH
T ss_pred CcccccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCccccccccccccccccCCCceEEEEecCCcccCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999987 59999999999999999999999
Q ss_pred EeecccccCccccccCCCccCCCCCCCCCCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHcCCCcchHHHHH
Q 022514 160 GALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALY 239 (296)
Q Consensus 160 aa~KGA~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~gi~~~~~e~~y 239 (296)
|+|+||+||||+||||+++|||||.|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+|++||+||
T Consensus 161 a~akGArDgGL~~Phs~~~fpg~d~e~k~~~ae~~r~rI~G~hVa~Ym~~L~eedee~yk~qFs~yik~gi~~~~le~~y 240 (297)
T 2zkr_n 161 GALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMY 240 (297)
T ss_dssp HHHHHHHHTTCBCCCCGGGSCCCCCCCCCC-CCCCCSSSSSSHHHHHHHTCSSSCTTTCSSCEEEEETTEEESSCCSHHH
T ss_pred HHHHHHHhcCcccCCCCccCCCCCccccccCHHHHHHhhCCeeHHHHHHHhhhcCHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHHhhcccCccC
Q 022514 240 KKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEDD 295 (296)
Q Consensus 240 ~~~h~~Ir~~p~~~~~~k~~~~~~k~~~~~Klt~~qrk~rv~~k~~~~~~~~~~~~ 295 (296)
++||++||+||+++++++++.+ +|+||++|||++|||+||+||++++++.+++++
T Consensus 241 ~~~~~~Ir~~P~~~~~~k~~~~-~k~~~~~klt~~qrk~rv~~k~~~~~~~~~~~~ 295 (297)
T 2zkr_n 241 KKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKDRVAQKKASFLRAQERAA 295 (297)
T ss_dssp HHHHHHC-------------------------------------------------
T ss_pred HHHHHHHHhCCCcccccccccc-cccccccccChHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999998888776543 489999999999999999999999997665443
No 4
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=100.00 E-value=1e-126 Score=891.78 Aligned_cols=288 Identities=82% Similarity=1.267 Sum_probs=281.6
Q ss_pred CceeeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 022514 1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYA 80 (296)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~rRRRegKTdY~~R~rli~qdk~ky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS 80 (296)
|||||||||+|||+||||||||||||||||++|++||+|||||||||+|||| ||+|||||||++.++||+|||||||
T Consensus 5 ~~fvKvvKnkaYf~RyqvkfRRRREGKTdY~~R~rLi~qdknKyntpKpRLV---SNrhIyaQII~~~i~GD~tLaSAsS 81 (304)
T 3iz5_Q 5 GGFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYS 81 (304)
T ss_dssp SSHHHHTTTBHHHHHHHSSCHHHHHTCCCHHHHHHHHTTSCCEEECCCSSSS---CSSCCEEEEEEEETTEEEEEEEEET
T ss_pred cceeeeeeccccccccccchhhcccccccHHHHHHHHHcCccccCCCCceee---cCCcEEEEEEecCCCCCEEEEEEec
Confidence 8999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCccccccccCCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccccCccccccCCCCCCCceEEEeecCccccCCCceEE
Q 022514 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFG 160 (296)
Q Consensus 81 ~EL~k~g~k~g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfa 160 (296)
+||+++||+++++|++||||||+|||+|||++||||++|+|++++||++|+||++++|+||+||||+||+|||+||||||
T Consensus 82 ~EL~kyG~k~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~f~~~LDiGL~rtttG~RVfa 161 (304)
T 3iz5_Q 82 HELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFG 161 (304)
T ss_dssp TTGGGGSCCSCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCCCSCCCSSCCSSCSCCCSCEEECTTCCCCSSCHHHH
T ss_pred CchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCccccCCccccccceecccccCCCCCceEEEecCCcccccCceeEE
Confidence 99999999999999999999999999999999999999999999999999999966899999999999999999999999
Q ss_pred eecccccCccccccCCCccCCCCCCCCCCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHcCCCcchHHHHHH
Q 022514 161 ALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYK 240 (296)
Q Consensus 161 a~KGA~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~gi~~~~~e~~y~ 240 (296)
|||||+||||+||||+++|||||.|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+||+
T Consensus 162 alKGA~DgGL~IPhs~~~fpg~d~e~k~~~aev~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~i~~~~le~~y~ 241 (304)
T 3iz5_Q 162 ALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYK 241 (304)
T ss_dssp HHHHHHTTTCCCCCCSSSCCCGGGTSSCCCCSSSCCSCSSSSTHHHHHSCCCCCSSCCSHHHHHHHHHHHSCCCCCCCCC
T ss_pred eeccccccCcccCCCcccccCccccccccCHHHHHHHHcCccHHHHHHhccccCHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHHhhccc
Q 022514 241 KVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAV 291 (296)
Q Consensus 241 ~~h~~Ir~~p~~~~~~k~~~~~~k~~~~~Klt~~qrk~rv~~k~~~~~~~~ 291 (296)
+||++||+||++++++++++..+|+||++|||++|||+||+||+++|.++.
T Consensus 242 ~~h~~Ir~~P~~~k~~~~~~~~~k~~~~~klt~~qrk~~v~~k~~~~~~~~ 292 (304)
T 3iz5_Q 242 KVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSA 292 (304)
T ss_dssp CCCCSCSCCHHHHHHCSCCCSHHHHHHHHHHHHHHHTTCSCCSSSCCCSCC
T ss_pred HHHHHHHhCccccccCCCccccccccCcccCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999998877776666789999999999999999999999999886
No 5
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-79 Score=550.63 Aligned_cols=195 Identities=38% Similarity=0.607 Sum_probs=188.7
Q ss_pred cccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCcc-ccccc
Q 022514 11 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELP-RYGLE 89 (296)
Q Consensus 11 ay~~ryqvk~rRRRegKTdY~~R~rli~qdk~ky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~-k~g~k 89 (296)
|-.+|||||||||||||||||+|++|+.|+ +||||||+||+|||||||+++++||+|||||||+||+ ++||+
T Consensus 2 a~g~ry~vk~rrRregkt~y~~R~rl~~~~-------kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~ 74 (203)
T 3j21_O 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSG-------KPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWK 74 (203)
T ss_dssp TTTTCSCCCCHHHHHTCCCHHHHHHHHTTC-------CCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCC
T ss_pred CCCCccccchhhHHHHhHHHHHHHHHHhcC-------CCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhccc
Confidence 568999999999999999999999999998 7999999999999999999777999999999999999 79999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccccCccccccCCCCCCCceEEEeecCccccCCCceEEeecccccCc
Q 022514 90 VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGG 169 (296)
Q Consensus 90 ~g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgG 169 (296)
.+++|++|||+||+|||+|||++ ||++ ||||+|+++||+||||||+|+||+|||
T Consensus 75 ~~~~N~~AA~~vG~llA~Ral~k--------GI~~------------------vvfDrgg~~y~~hgRV~Ala~gAre~G 128 (203)
T 3j21_O 75 GHCGNTPSAYLLGLLIGYKAKQA--------GIEE------------------AILDIGLHPPVRGSSVFAVLKGAVDAG 128 (203)
T ss_dssp SCTTSHHHHHHHHHHSSSSTTSS--------CCCC------------------CEEECCSSCCCTTSHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHHhC--------CCCE------------------EEEecCcceeccCcchhhhhhhcccCC
Confidence 89999999999999999999999 9987 999999999999999999999999999
Q ss_pred cccccCCCccCCCCCCCCCCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHcCCCcchHHHHHHHHHHHHhcC
Q 022514 170 LDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRAD 249 (296)
Q Consensus 170 L~IPh~~~~fpgy~~e~k~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~gi~~~~~e~~y~~~h~~Ir~~ 249 (296)
|+||||+++|||+ +||+|+|||+||++|+|||||+|++|||+||++||+||+||+||++||++|++.
T Consensus 129 L~iPhs~~~fp~~-------------~ri~G~hva~y~~~L~eed~e~yk~qFs~yik~~~~~~~~~~~~~~~~~~I~~~ 195 (203)
T 3j21_O 129 LNVPHSPEIFPDE-------------YRIRGEHIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPEKLPEHFEEVKARIIEK 195 (203)
T ss_dssp CCCCCCSSCSCCH-------------HHHHTCHHHHHHHHCCSSCCCSSSCCCSCSCCCSSSSSCCHHHHHHHHTTCTTT
T ss_pred eecccCCccCCCc-------------ccccCccHHHHHHHhhhhCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Confidence 9999999999994 799999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 022514 250 PT 251 (296)
Q Consensus 250 p~ 251 (296)
..
T Consensus 196 ~~ 197 (203)
T 3j21_O 196 FE 197 (203)
T ss_dssp TC
T ss_pred Hh
Confidence 64
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=100.00 E-value=1.4e-73 Score=506.02 Aligned_cols=184 Identities=38% Similarity=0.585 Sum_probs=176.5
Q ss_pred cccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCcccccccc
Q 022514 11 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEV 90 (296)
Q Consensus 11 ay~~ryqvk~rRRRegKTdY~~R~rli~qdk~ky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~k~g~k~ 90 (296)
|..+|||||||||||||||||+|+||+.++ +|||+||+||+|||||||+++.+||+|||||||+|++++||+.
T Consensus 2 a~g~ry~vk~rrrregkTdy~~R~rl~~~~-------rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~k~~~k~ 74 (187)
T 1vq8_N 2 ATGPRYKVPMRRRREARTDYHQRLRLLKSG-------KPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEA 74 (187)
T ss_dssp CCSTTCCCCCHHHHTTCCCHHHHHHHHTTC-------SCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCS
T ss_pred CCCCcccccccchhccchhHHHHHHHHhcC-------CCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchhcccccc
Confidence 568999999999999999999999999988 6999999999999999997777899999999999999889977
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccccCccccccCCCCCCCceEEEeecCccccCCCceEEeecccccCcc
Q 022514 91 GLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGL 170 (296)
Q Consensus 91 g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL 170 (296)
+++|++|||+||+|||+|||++ ||++ ||||+|+++||+||||||+|+||+|+||
T Consensus 75 ~~~N~~AA~~vG~llA~Ral~k--------GI~~------------------vvfDrgg~~yh~GgRV~Ala~gAre~GL 128 (187)
T 1vq8_N 75 PTGNMPSAYLTGLLAGLRAQEA--------GVEE------------------AVLDIGLNSPTPGSKVFAIQEGAIDAGL 128 (187)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHT--------TCCB------------------CEEECTTSCCCTTCHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHHHHC--------CCCE------------------EEEcCCCceeccchHHHHHHHHhhcCCE
Confidence 8999999999999999999999 9987 9999999999999999999999999999
Q ss_pred ccccCCCccCCCCCCCCCCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHcCCCcchHHHHHHHHHHHHhcCC
Q 022514 171 DIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADP 250 (296)
Q Consensus 171 ~IPh~~~~fpgy~~e~k~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~gi~~~~~e~~y~~~h~~Ir~~p 250 (296)
+||||+++|||| +||+|+|||+||++|. | +||++||+|++||+||++||++|++||
T Consensus 129 ~fph~~~~fp~~-------------~ri~G~hva~y~~~l~---~--------~y~~~~~~~~~l~~~~~~~~~~I~~~p 184 (187)
T 1vq8_N 129 DIPHNDDVLADW-------------QRTRGAHIAEYDEQLE---E--------PLYSGDFDAADLPEHFDELRETLLDGD 184 (187)
T ss_dssp BCCCCGGGSCCH-------------HHHHTHHHHHHHHSCS---S--------CSSSSCSCSSCCHHHHHHHHHHHHSSS
T ss_pred eccCCCccCCCC-------------ceeccEEHHHHHHHhh---H--------HHHHCCCCHHHHHHHHHHHHHHHHhCC
Confidence 999999999995 6999999999999993 2 899999999999999999999999999
Q ss_pred C
Q 022514 251 T 251 (296)
Q Consensus 251 ~ 251 (296)
+
T Consensus 185 ~ 185 (187)
T 1vq8_N 185 I 185 (187)
T ss_dssp S
T ss_pred C
Confidence 6
No 7
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=100.00 E-value=3e-34 Score=237.48 Aligned_cols=107 Identities=28% Similarity=0.232 Sum_probs=98.3
Q ss_pred HHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCccccccccCCCcHHHHHHHHHHHHHHH
Q 022514 30 YRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRV 109 (296)
Q Consensus 30 Y~~R~rli~qdk~ky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~k~g~k~g~~N~~AAy~tGlLlAkRa 109 (296)
.+.|.|....+ +++|||+|++||+|||||||++ +||+|||||||+|++.++|..+++|++|||+||+|||+|+
T Consensus 9 r~~r~R~ki~~-----~~rpRL~V~rSnkhIyAQiidd--~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ra 81 (116)
T 3r8s_O 9 RATRARRKLQE-----LGATRLVVHRTPRHIYAQVIAP--NGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERA 81 (116)
T ss_dssp HHHHHHHHHHT-----TTCCEEEEEECSSCEEEEEECT--TSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-----CCCCEEEEEEeCCEEEEEEEEc--CCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHH
Confidence 45566666665 5799999999999999999985 6889999999999999999889999999999999999999
Q ss_pred HhhhcCCcccCCcccccCccccccCCCCCCCceEEEeecCccccCCCceEEeecccccCccc
Q 022514 110 LKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLD 171 (296)
Q Consensus 110 l~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~ 171 (296)
+++ ||++ ++||+|+++|| |||+|+++||+|+||+
T Consensus 82 l~~--------GI~~------------------vvfDrgg~~yh--GrV~Ala~~are~Gl~ 115 (116)
T 3r8s_O 82 LEK--------GIKD------------------VSFDRSGFQYH--GRVQALADAAREAGLQ 115 (116)
T ss_dssp HTT--------TCCC------------------CEEECTTSCSS--SHHHHHHHHHHHTTCC
T ss_pred HHC--------CCCE------------------EEEecCCCccc--HHHHHHHHHHHHhCCC
Confidence 999 9997 99999999997 7999999999999996
No 8
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=100.00 E-value=3.3e-34 Score=238.69 Aligned_cols=112 Identities=28% Similarity=0.297 Sum_probs=89.8
Q ss_pred cCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCccccccccCCCcHHHHHHHHHH
Q 022514 25 EGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLL 104 (296)
Q Consensus 25 egKTdY~~R~rli~qdk~ky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~k~g~k~g~~N~~AAy~tGlL 104 (296)
+.+...+.|.|...+++ +++|||+|++||+|||||||++ +||+|||||||+|++ ++ ..+++|++|||+||+|
T Consensus 9 ~~r~~r~~R~r~ki~gt----~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAsT~e~~-~~-~~~~~n~~AA~~vG~l 80 (120)
T 1ovy_A 9 AVRKKRHARIRKKIFGT----TERPRLSVFRSNKHIYAQIIDD--TKSATIVSASTLDKE-FG-LDSTNNIEAAKKVGEL 80 (120)
T ss_dssp ---------------CC----SSCCSEEEEEETTEEEEEEECC--SSCCCEEEESTTSTT-TC-SSCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC----CCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEecCchh-hC-cCCCCcHHHHHHHHHH
Confidence 33445677888888886 7899999999999999999986 689999999999998 45 3468999999999999
Q ss_pred HHHHHHhhhcCCcccCCcccccCccccccCCCCCCCceEEEeecCccccCCCceEEeecccccCcccc
Q 022514 105 LARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDI 172 (296)
Q Consensus 105 lAkRal~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~I 172 (296)
||+|++++ ||++ |+||+|+++|| |||+|+++||+|+||+.
T Consensus 81 lA~Ral~~--------GI~~------------------vvfDrgg~~yh--grV~ala~~are~GL~f 120 (120)
T 1ovy_A 81 VAKRALEK--------GIKQ------------------VVFDRGGYLYH--GRVKALADAAREAGLEF 120 (120)
T ss_dssp HHHHHHHH--------SSSC------------------CCCCSTTCSSC--SSTHHHHHHHHHHHCCC
T ss_pred HHHHHHHC--------CCCE------------------EEEecCCcccc--HHHHHHHHHHHHhCCcC
Confidence 99999999 9997 99999999996 89999999999999963
No 9
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=99.97 E-value=2.9e-32 Score=224.63 Aligned_cols=105 Identities=28% Similarity=0.279 Sum_probs=94.0
Q ss_pred chhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCccccccccCCCcHHHHHHHHHHHH
Q 022514 27 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLA 106 (296)
Q Consensus 27 KTdY~~R~rli~qdk~ky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~k~g~k~g~~N~~AAy~tGlLlA 106 (296)
+...+.|.|..+.+ +++|||+|++||+|||||||++ +||+|||||||+|++. + ++|++|||+||+|||
T Consensus 7 r~~r~~r~r~ki~g-----t~rpRL~V~rSnkhiyAQiidd--~~~~tlasAsT~e~~~---k--~~n~~AA~~vG~llA 74 (112)
T 3v2d_S 7 YERRKFRVRNRIKR-----TGRLRLSVFRSLKHIYAQIIDD--EKGVTLVSASSLALKL---K--GNKTEVARQVGRALA 74 (112)
T ss_dssp HHHHHHHHHHHHHH-----TCCCEEEEEECSSCEEEEEEET--TTTEEEEEEETTTTTC---C--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-----CCCCEEEEEEeCCeEEEEEEec--CCCeEEEEEEecchhc---c--CCCHHHHHHHHHHHH
Confidence 33456677777777 4699999999999999999985 6889999999999973 2 679999999999999
Q ss_pred HHHHhhhcCCcccCCcccccCccccccCCCCCCCceEEEeecCccccCCCceEEeecccccCccc
Q 022514 107 RRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLD 171 (296)
Q Consensus 107 kRal~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~ 171 (296)
+|++++ ||++ ++||+|+++|| |||+|+++||+|+||+
T Consensus 75 ~ra~~~--------GI~~------------------vvfDrgg~~yh--GrV~Ala~~are~GL~ 111 (112)
T 3v2d_S 75 EKALAL--------GIKQ------------------VAFDRGPYKYH--GRVKALAEGAREGGLE 111 (112)
T ss_dssp HHHHTT--------TCCB------------------CEEECTTSCSC--SSTTHHHHHHHHTTCB
T ss_pred HHHHHC--------CCCE------------------EEEecCCCccc--HHHHHHHHHHHHcCCC
Confidence 999999 9997 99999999997 7999999999999996
No 10
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=99.97 E-value=1.7e-32 Score=226.71 Aligned_cols=105 Identities=28% Similarity=0.291 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhCCCCCC--CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCccccccccCCCcHHHHHHHHHHHH
Q 022514 29 DYRARIRLINQDKNKYN--TPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLA 106 (296)
Q Consensus 29 dY~~R~rli~qdk~ky~--s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~k~g~k~g~~N~~AAy~tGlLlA 106 (296)
..+.|.|...+++ + +++|||+|++||+|||||||++ +||+|||||||+|| .+++|++|||+||+|||
T Consensus 8 ~r~~r~r~ki~gt---~~~~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAST~el------~~~~n~~AA~~vG~llA 76 (114)
T 2zjr_L 8 RRKLRTRRKVRTT---TAASGRLRLSVYRSSKHIYAQIIDD--SRGQTLAAASSAAL------KSGNKTDTAAAVGKALA 76 (114)
T ss_dssp CHHHHHHHHHHSC---STTTCSEEECCCTTSSCCCCCEEET--TTTEECCCCCSCSC------CTTCSSSSHHHHHHHHH
T ss_pred HHHHHHHhhhccc---cCCCCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEEchHh------cCCCCHHHHHHHHHHHH
Confidence 4577888888873 3 6799999999999999999976 68999999999996 25789999999999999
Q ss_pred HHHHhhhcCCcccCCcccccCccccccCCCCCCCceEEEeecCccccCCCceEEeecccccCcccc
Q 022514 107 RRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDI 172 (296)
Q Consensus 107 kRal~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~I 172 (296)
+|++++ ||++ |+||+|+++|| |||+|+++||+|+||++
T Consensus 77 ~Ral~~--------GI~~------------------vvfDrgg~~yh--grV~Ala~~are~GL~f 114 (114)
T 2zjr_L 77 AAAAEK--------GIKQ------------------VVFDRGSYKYH--GRVKALADAAREGGLDF 114 (114)
T ss_dssp HHHHTT--------CCCC------------------CEECCCSSCSC--SHHHHHHHHHHHHC---
T ss_pred HHHHHC--------CCCE------------------EEEecCCcccc--HHHHHHHHHHHHhCCcC
Confidence 999999 9997 99999999996 89999999999999974
No 11
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.95 E-value=3.3e-30 Score=223.85 Aligned_cols=110 Identities=22% Similarity=0.219 Sum_probs=96.4
Q ss_pred chhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCcc---ccccccCCCcHHHHHHHHH
Q 022514 27 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELP---RYGLEVGLTNYAAAYCTGL 103 (296)
Q Consensus 27 KTdY~~R~rli~qdk~ky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~---k~g~k~g~~N~~AAy~tGl 103 (296)
+...+.|.|..+.|+ +.+|||+|++||+||||||||+ .+|+||+||||.|.. .++| +.++|++||++||.
T Consensus 48 R~rR~~RiR~ki~gt----~~rPRL~V~rSnkhIyAQvIdd--~~g~tLasASTlek~lk~~l~~-g~~~n~~AA~~VG~ 120 (161)
T 3bbo_Q 48 RTARHVRIRKKVEGT----PERPRLCVFRSNKHLYVQVIDD--SKMHTLASASTMQKSISEELDY-SSSPTIEVAKKVGE 120 (161)
T ss_dssp GGGTSCCSCSGGGGS----SSCCCCEEEECSSCEEEEEECC--TTSCEEEEEEHHHHHHHHCCTT-CCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhccC----CCCCEEEEEecCCeEEEEEEEC--CCCEEEEEEeCCcHHHHhhccc-cCCCCHHHHHHHHH
Confidence 344456777777886 6699999999999999999987 588999999998754 2444 45789999999999
Q ss_pred HHHHHHHhhhcCCcccCCcccccCccccccCCCCCCCceEEEeecCccccCCCceEEeecccccCccc
Q 022514 104 LLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLD 171 (296)
Q Consensus 104 LlAkRal~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~ 171 (296)
+||+||+++ ||++ ||||+|+++|| |||+|+++||+|+||+
T Consensus 121 liAeRA~e~--------GI~~------------------VvFDRgg~~Yh--GRVkAladaaRe~GL~ 160 (161)
T 3bbo_Q 121 VIASACLEK--------GITK------------------VAFDRGGYPYH--GRVKALADAAREKGLQ 160 (161)
T ss_dssp HSSSHHHHT--------SSCC------------------CCCCCSSSCSS--STTHHHHHHHTTTTCC
T ss_pred HHHHHHHHC--------CCCE------------------EEEeCCCCcch--HHHHHHHHHHHHhCCc
Confidence 999999999 9997 99999999998 7999999999999996
No 12
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=99.89 E-value=9.7e-25 Score=154.34 Aligned_cols=43 Identities=63% Similarity=0.936 Sum_probs=41.7
Q ss_pred CceeeeecCccccccccccchhhccCchhHHHHHHHHHhCCCC
Q 022514 1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNK 43 (296)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~rRRRegKTdY~~R~rli~qdk~k 43 (296)
||||||+||+|||+||||||||||||||||++|++||.|||+.
T Consensus 1 M~FvKvvKnkaYfkRyQvkfRRRREGKTDYyaRkrLv~QdKas 43 (49)
T 4gmn_B 1 MAFHKLVKNSAYYSRFQTKFKRRRQGKTDYYARKRLITQAKGS 43 (49)
T ss_pred CCceeeehhHHHHHHHhhHHhhhhcccchHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999854
No 13
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.94 E-value=0.024 Score=47.94 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=76.1
Q ss_pred CcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCccccccccCCCcHHHHHHHHHHHHHHHHhhhcCCcccCCccccc
Q 022514 47 PKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEAT 126 (296)
Q Consensus 47 ~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~k~g~k~g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~~ 126 (296)
+..-+-|+-|-++.++.|.|. .|..||+.+|+-.....|-. ....-||.+++.-+|+++++. |++.+
T Consensus 13 ~~gi~hI~asfNNTivtiTD~--~G~~~i~~~S~G~~gfkg~~--ksTp~AA~~aa~~~~~~a~e~--------Gi~~v- 79 (137)
T 3j20_M 13 KWGIAHIYSSFNNTIIHITDI--TGAETISRWSGGMVVKADRD--EPSPYAAMLAARRAAEEALEK--------GIVGV- 79 (137)
T ss_dssp EEEEEEEEECSSCEEEEEEES--SSCSEEEEEEGGGTCSCTTT--SSSHHHHHHHHHHHHHHHHHH--------TEEEE-
T ss_pred cceEEEEEcCCCCEEEEEEcC--CCCEEEEEEccceeeecCCc--cCCHHHHHHHHHHHHHHHHHc--------CCeEE-
Confidence 356677889999999999996 58679988887766544432 245678999999999999999 98762
Q ss_pred CccccccCCCCCCCceEEEee-cCccccC-CCceEEeecccccCccc---------cccCCCccCCC
Q 022514 127 GEDYSVEPADTRRPFRALLDV-GLIKTTT-GNRVFGALKGALDGGLD---------IPHSDKRFAGF 182 (296)
Q Consensus 127 g~~~~ve~~~~~~~f~~vlD~-Gl~r~t~-G~RVfaa~KGA~DgGL~---------IPh~~~~fpgy 182 (296)
.+.|-- |+.++.+ |.---+|+++...+||. |||+-.|-||-
T Consensus 80 ---------------~V~vkG~gg~~~~~pG~GresairaL~~~Gl~I~~I~DvTpiPhnGcRp~g~ 131 (137)
T 3j20_M 80 ---------------HIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGG 131 (137)
T ss_dssp ---------------EEEEECCCSSSCCSCCTHHHHHHHHHHHHTCEEEEEEECCCCCSSCCCCSCC
T ss_pred ---------------EEEEECCCCCCCcCCCCcHHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCCC
Confidence 244422 3333321 22224567777777887 69999999984
No 14
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=95.72 E-value=0.03 Score=46.78 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=75.7
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCccccccccCCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccc
Q 022514 46 TPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEA 125 (296)
Q Consensus 46 s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~k~g~k~g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~ 125 (296)
-+...+-|+-|-+++++.|.|. .| .+++.+|+-.+...|-. ....-||+.++..+|+++++. |+..+
T Consensus 14 ~~~gi~hI~as~NNTivtiTd~--~G-~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~--------Gi~~v 80 (129)
T 2vqe_K 14 VASGRAYIHASYNNTIVTITDP--DG-NPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAY--------GMQSV 80 (129)
T ss_dssp CSEEEEEEEECSSCEEEEEECT--TS-CEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTT--------TCCEE
T ss_pred ccceEEEEEecCCCEEEEEEcC--CC-CEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHh--------CCeEE
Confidence 4568899999999999999996 57 77888887766544432 356889999999999999998 88751
Q ss_pred cCccccccCCCCCCCceEEEeecCccccCCCceEEeecccccCccc---------cccCCCccCC
Q 022514 126 TGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLD---------IPHSDKRFAG 181 (296)
Q Consensus 126 ~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~---------IPh~~~~fpg 181 (296)
.++| .|. +-|| .+++++...+||. |||+-.|-|.
T Consensus 81 ----------------~V~v-kG~----G~Gr-e~airaL~~~Gl~I~~I~DvTpiPhnGcRp~K 123 (129)
T 2vqe_K 81 ----------------DVIV-RGT----GAGR-EQAIRALQASGLQVKSIVDDTPVPHNGCRPKK 123 (129)
T ss_dssp ----------------EEEE-ESC----CTTH-HHHHHHHHTSSSEEEECEECCCCCSSCSCCCG
T ss_pred ----------------EEEE-ECC----CCCH-HHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCC
Confidence 1333 232 2244 4678888888986 7999999886
No 15
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=95.06 E-value=0.041 Score=45.23 Aligned_cols=101 Identities=19% Similarity=0.121 Sum_probs=71.7
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCccccccccCCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccc
Q 022514 46 TPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEA 125 (296)
Q Consensus 46 s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~k~g~k~g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~ 125 (296)
-+.--+-|+-|-++.++.|.|. .| .+|+.+|+-.+...|-. ....-||++++.-+++++++. |++.+
T Consensus 4 ~~~gi~hI~as~NNTivtiTD~--~G-~~i~~~S~G~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~--------Gi~~v 70 (117)
T 3r8n_K 4 VSDGVAHIHASFNNTIVTITDR--QG-NALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEY--------GIKNL 70 (117)
T ss_dssp CCEEEEEEEECSSCEEEEEECT--TS-CCSEEEETGGGSCCGGG--GSSHHHHHHHHHHHHHHHTTS--------CCCEE
T ss_pred cceeEEEEEcccCCEEEEEEcC--CC-CEEEEEcCCccccCCCc--cCCHHHHHHHHHHHHHHHHHh--------CCcEE
Confidence 3445566888999999999996 57 58888887766544433 245778899999999999998 88751
Q ss_pred cCccccccCCCCCCCceEEEeecCccccCCCceEEeecccccCccc---------cccCCCccCC
Q 022514 126 TGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLD---------IPHSDKRFAG 181 (296)
Q Consensus 126 ~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~---------IPh~~~~fpg 181 (296)
.++| .|. +-|| .+++++....||. |||+-.|-|.
T Consensus 71 ----------------~v~v-kG~----G~Gr-~~airaL~~~Gl~I~~I~DvTpiphnGcRp~K 113 (117)
T 3r8n_K 71 ----------------EVMV-KGP----GPGR-ESTIRALNAAGFRITNITDVTPIPHNGCRPPK 113 (117)
T ss_dssp ----------------EEEE-ECS----SSST-THHHHHHHHTTCEEEEEEECCCCCSSCSCCCC
T ss_pred ----------------EEEE-eCC----CccH-HHHHHHHHhCCCEEEEEEEeCCCCCCCCCCCC
Confidence 2444 232 1133 4567777778887 5999888875
No 16
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=94.85 E-value=0.035 Score=47.09 Aligned_cols=101 Identities=23% Similarity=0.179 Sum_probs=74.2
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCccccccccCCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccc
Q 022514 46 TPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEA 125 (296)
Q Consensus 46 s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~k~g~k~g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~ 125 (296)
-+..-+-|+-|-+++++.|.|. .| .+++.+|+-.+...|-. ....-||+.++..+++++++. |+..+
T Consensus 27 ~~~gi~hI~as~NNTivtiTD~--~G-~~i~~~SaG~~GfKg~r--ksTp~AA~~aa~~~~~~a~e~--------Gi~~v 93 (140)
T 3bbn_K 27 IPKGVIHVQASFNNTIVTVTDV--RG-RVVSWASAGTCGFRGTK--RGTPFAAQTAAGNAIRTVVEQ--------GMQRA 93 (140)
T ss_dssp CCCCEEEEEECSSCEEEEEECS--SS-CEEEEEETTTSSCCTTS--CSSHHHHHHHHTSGGGTSTTT--------CCCEE
T ss_pred ceeeEEEEEecCCCEEEEEEcC--CC-CEEEEEeccceeEcccc--cCCHHHHHHHHHHHHHHHHHh--------CCeEE
Confidence 4578999999999999999996 57 77888888766544432 356888999999999999888 87651
Q ss_pred cCccccccCCCCCCCceEEEeecCccccCCCceEEeecccccCccc---------cccCCCccCC
Q 022514 126 TGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLD---------IPHSDKRFAG 181 (296)
Q Consensus 126 ~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~---------IPh~~~~fpg 181 (296)
.++| .|. +-|| .+++++...+||. |||+-.|-|.
T Consensus 94 ----------------~V~v-kG~----G~GR-eaairaL~~~Gl~I~~I~DvTpiPhnGcRppK 136 (140)
T 3bbn_K 94 ----------------EVMI-KGP----GLGR-DAALRAIRRSGILLSFVRDVTPMPHNGCRPPK 136 (140)
T ss_dssp ----------------EEEE-ESC----STTS-SHHHHHHHTTTCEEEEEEECCCCCCSCCCCCC
T ss_pred ----------------EEEE-ECC----CCcH-HHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCC
Confidence 1333 231 2244 3678888788986 7999888885
No 17
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=94.60 E-value=0.028 Score=48.29 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=73.7
Q ss_pred cceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCccccccccCCCcHHHHHHHHHHHHHHHHhhhcCCcccCCcccccC
Q 022514 48 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATG 127 (296)
Q Consensus 48 KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~k~g~k~g~~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~~g 127 (296)
..-+-|+-|-+++++.|.|. .|..|+++++.-..-+.+- .....-||.+++.-+|+++++. ||+.+
T Consensus 28 ~gi~hI~asfNNTiVtiTD~--~G~~~~~~ssgg~~~k~~r--~ksTpyAAq~aa~~~a~~a~e~--------Gi~~v-- 93 (151)
T 2xzm_K 28 FGVCHIMATWNDTFIHVTDL--SGRETLVRVTGGMKVKADR--EESSPYAAMQAAIDVVNRCKEL--------KINAL-- 93 (151)
T ss_dssp EEEEEEEBCSSCBCCEEECT--TCCSEEEECCHHHHCSSGG--GGSCHHHHHHHHHHHHHHHHHH--------TCCEE--
T ss_pred eeEEEEEccCCCEEEEEECC--CCCEEEEEecCcceEeCCC--CcCCHHHHHHHHHHHHHHHHHc--------CCeEE--
Confidence 46788899999999999996 6876777755433222221 1245678899999999999999 88751
Q ss_pred ccccccCCCCCCCceEEE-eecCccccC-CCceEEeecccccCccc---------cccCCCccCC
Q 022514 128 EDYSVEPADTRRPFRALL-DVGLIKTTT-GNRVFGALKGALDGGLD---------IPHSDKRFAG 181 (296)
Q Consensus 128 ~~~~ve~~~~~~~f~~vl-D~Gl~r~t~-G~RVfaa~KGA~DgGL~---------IPh~~~~fpg 181 (296)
.+.| ..|+.++.+ |.--.+|+++...+||. |||+-.|-|+
T Consensus 94 --------------~V~vkG~gg~~~kgpG~GresairaL~~~GlkI~~I~DvTpiPhNGcRp~K 144 (151)
T 2xzm_K 94 --------------HIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREG 144 (151)
T ss_dssp --------------EEEEECCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEECCCCCSSCCCCSS
T ss_pred --------------EEEEEcCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEeCCCCCCCCCCCC
Confidence 2444 244555433 22235677877778987 7999999887
No 18
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=92.90 E-value=0.071 Score=45.05 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=69.4
Q ss_pred cceEEEEecCCcEEEEEEeeecCCCEEEEEEeccCccccccccCC--CcHHHHHHHHHHHHHHHHhhhcCCcccCCcccc
Q 022514 48 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGL--TNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEA 125 (296)
Q Consensus 48 KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~k~g~k~g~--~N~~AAy~tGlLlAkRal~k~~l~~~y~Gi~e~ 125 (296)
..-+-|+-|-++.++.|.|. .|..+++ .||-.+. ++.+. ...-||.+++..+|+++++. |++.+
T Consensus 14 ~gi~hI~asfNNTivtvTD~--~G~~~~~-~ssG~~g---fKg~r~ksTpyAAq~aa~~~a~~a~e~--------Gi~~v 79 (137)
T 3u5c_O 14 FGVARIYASFNDTFVHVTDL--SGKETIA-RVTGGMK---VKADRDESSPYAAMLAAQDVAAKCKEV--------GITAV 79 (137)
T ss_dssp EEECCEEEETTEEEECCEET--TSSSCCC-CCBTTTT---SCCSTTTTCHHHHHHHHHHHHHHHHHH--------TCCEE
T ss_pred eEEEEEEccCCCEEEEEEcC--CCCEEEE-EeCCCcE---EeCCcccCCHHHHHHHHHHHHHHHHHc--------CCeEE
Confidence 34556889999999999996 5854444 4444443 23222 45668999999999999999 88751
Q ss_pred cCccccccCCCCCCCceEEE-eecCccccC-CCceEEeecccccCccc---------cccCCCccCC
Q 022514 126 TGEDYSVEPADTRRPFRALL-DVGLIKTTT-GNRVFGALKGALDGGLD---------IPHSDKRFAG 181 (296)
Q Consensus 126 ~g~~~~ve~~~~~~~f~~vl-D~Gl~r~t~-G~RVfaa~KGA~DgGL~---------IPh~~~~fpg 181 (296)
.+.| -.|+.++.+ |.==-+|+++...+||. |||+-.|-|+
T Consensus 80 ----------------~V~vra~gg~~~kgpG~Gr~sairaL~~~Gl~I~~I~DvTpiPhnGcRp~K 130 (137)
T 3u5c_O 80 ----------------HVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKG 130 (137)
T ss_dssp ----------------ECEEECSCTTSCCSCCGGGHHHHHHHHTTTCEECCCEECCCCCSSCSCCTT
T ss_pred ----------------EEEEeccCCCcccCCCcchHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCC
Confidence 2444 234444422 11124567777778987 6999999887
No 19
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}
Probab=52.16 E-value=8.3 Score=38.19 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=42.2
Q ss_pred Eeecc-cccCccccccCCCccCCCCCCCCCCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHcCCCcchHHHH
Q 022514 160 GALKG-ALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEAL 238 (296)
Q Consensus 160 aa~KG-A~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~gi~~~~~e~~ 238 (296)
|++.| |.||||.||.+ +|-+ +++.+. .+.+..- +|.=..-+|.|| ..|++++|..|
T Consensus 24 a~l~Gla~DgGLyvP~~---~P~~-------~~~~~~-~~~~~sy-----------~ela~~il~~f~-~~i~~~~l~~~ 80 (487)
T 3v7n_A 24 ILLGGLAKDGGLYLPSE---YPQV-------SADELA-RWRTLPY-----------ADLAFEILSKFC-DDIAAADLRAI 80 (487)
T ss_dssp HTTCCCCTTSCCEEESS---CCCC-------CHHHHH-HHTTCCH-----------HHHHHHHHHHHC-SSSCHHHHHHH
T ss_pred HHHhCCCCCCceEcCcc---CCCC-------CHHHHH-HHhCCCH-----------HHHHHHHHHHHh-ccCCHHHHHHH
Confidence 57888 89999999985 5543 222222 2222222 334445678888 88999999999
Q ss_pred HHHHHHH
Q 022514 239 YKKVHAA 245 (296)
Q Consensus 239 y~~~h~~ 245 (296)
-.+|...
T Consensus 81 i~~ay~~ 87 (487)
T 3v7n_A 81 TRRTYTA 87 (487)
T ss_dssp HHHHSCT
T ss_pred HHHHhCc
Confidence 9988763
No 20
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=51.26 E-value=21 Score=27.66 Aligned_cols=45 Identities=22% Similarity=0.429 Sum_probs=32.7
Q ss_pred HHHHHHHhcccChHHHh-hhhHHH-HHcCCCcchHHHHHHHHHHHHhcC
Q 022514 203 VAAYMSTLMEDEPEKYQ-SHFTEY-IKKGIDADGLEALYKKVHAAIRAD 249 (296)
Q Consensus 203 va~Ym~~L~eed~e~yk-~qFs~y-ik~gi~~~~~e~~y~~~h~~Ir~~ 249 (296)
+.+|+..-.| .-.|+ .+||+. |+.+|.|++|-++.+++.+.+--+
T Consensus 15 L~~yl~~~~E--~~Ly~~q~fs~~~iek~i~PEeiV~iHk~~i~el~~~ 61 (84)
T 1w53_A 15 LSRYIAELTE--TSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKELYPS 61 (84)
T ss_dssp HHHHHHHCCH--HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcccH--HHHHHHHHhhHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 4566655544 33444 379986 578999999999999999988444
No 21
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}
Probab=45.98 E-value=8.4 Score=37.84 Aligned_cols=100 Identities=21% Similarity=0.288 Sum_probs=58.0
Q ss_pred Eeecc-cccCccccccCCCccCCCCCCCCCCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHcCCCcchHHHH
Q 022514 160 GALKG-ALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEAL 238 (296)
Q Consensus 160 aa~KG-A~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~gi~~~~~e~~ 238 (296)
|++.| |.||||.||.+ +|-+ +.+.++ .+.+..- +|.-..-+|.||...|++++|.+|
T Consensus 23 a~l~gla~dgGLy~P~~---~p~~-------~~~~~~-~~~~~sy-----------~~~a~~i~~~f~~~~i~~~~l~~~ 80 (468)
T 4f4f_A 23 ALLAGLARDGGLYLPQE---YPQF-------TAEQIR-ALRGKSY-----------VEVALAVLTPFTGGEIPAADFERM 80 (468)
T ss_dssp HHHHCSCTTSCCEEESS---CCCC-------CHHHHH-TTTTCCH-----------HHHHHHHHGGGGTTCSCHHHHHHH
T ss_pred HHHhCCCCCCceEcCcc---CCCC-------CHHHHH-HHhCCCH-----------HHHHHHHHHHHhcCCCCHHHHHHH
Confidence 57888 89999999985 5543 233222 2223222 233344567778778999999999
Q ss_pred HHHHHHHHh-cCCCCCCCCCCCcccccccCCCCCCHHHHHHHHH
Q 022514 239 YKKVHAAIR-ADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLV 281 (296)
Q Consensus 239 y~~~h~~Ir-~~p~~~~~~k~~~~~~k~~~~~Klt~~qrk~rv~ 281 (296)
-.+|..... .+.+|-.+-....-.+-=++.|-.+-+.|-....
T Consensus 81 ~~~ay~~F~~~~~~pl~~l~~~~~~kee~~~PTgSFKDRga~~~ 124 (468)
T 4f4f_A 81 VREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLL 124 (468)
T ss_dssp HHHHHHTSSSTTSSCEEEEETTEEEEECCCSTTSBTHHHHHHHH
T ss_pred HHHHHhcCCCCCCCceEEecCCeehHHhccCCcccHHHHHHHHH
Confidence 999987543 1122322111111012235667778777766544
No 22
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=45.15 E-value=33 Score=27.01 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=45.2
Q ss_pred CCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHcCCCcchHHHHHHHHHHH
Q 022514 188 QLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAA 245 (296)
Q Consensus 188 ~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~gi~~~~~e~~y~~~h~~ 245 (296)
.||.+.+.+ +-.+++..|.++|=+.-...||.=++..++++.|+ +++.+...
T Consensus 10 ~fde~~v~~-----~A~~~I~~l~~~dy~~i~~~~~~~lk~~Lt~e~l~-~~~~~~~~ 61 (114)
T 4hyz_A 10 GFDKETVRK-----QAMEDIEIAQSKDYESWKSRFTKDLQSSLTEESYD-SYLKILEK 61 (114)
T ss_dssp TCCHHHHHH-----HHHHHHHHHHTTCHHHHHTTBCHHHHTTCCHHHHH-HHHHHHHT
T ss_pred hhhHHHHHH-----HHHHHHHHHHhCCHHHHHHHhCHHHHhhCCHHHHH-HHHHHHHh
Confidence 588887776 67799999999999999999999999999999999 99876553
No 23
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=43.13 E-value=31 Score=28.07 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=25.4
Q ss_pred hhHHH-HHcCCCcchHHHHHHHHHHHHhcCCC
Q 022514 221 HFTEY-IKKGIDADGLEALYKKVHAAIRADPT 251 (296)
Q Consensus 221 qFs~y-ik~gi~~~~~e~~y~~~h~~Ir~~p~ 251 (296)
+||+. |+.+|.|++|-+|.++|...+ +|+
T Consensus 32 ~fsr~liek~I~PEeiV~iHk~~i~~l--~~~ 61 (111)
T 2j6y_A 32 KFSRKTIEHQIPPEEIISIHRKVLKEL--YPS 61 (111)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh--CCC
Confidence 78885 778999999999999999998 554
No 24
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=33.37 E-value=7.7 Score=35.62 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=32.6
Q ss_pred HHhccccCccHHHHHHHhcccChHHHhh---hhHHHHHcCCCcch
Q 022514 193 VHRKYIYGGHVAAYMSTLMEDEPEKYQS---HFTEYIKKGIDADG 234 (296)
Q Consensus 193 ~~~~rI~G~hva~Ym~~L~eed~e~yk~---qFs~yik~gi~~~~ 234 (296)
++++. .+.-|.++.+.|.++|+|.|++ +|+..||.|+-.|.
T Consensus 123 ~Irk~-l~kkvl~~l~~la~~d~e~y~kf~~~fg~~lK~G~~eD~ 166 (263)
T 1y6z_A 123 IINKR-IVLKSISMMKGLKETGGDKWTKFLNTFGKYLKIGVVEDK 166 (263)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHccccccCH
Confidence 33444 5678889999999999999986 89999999986553
No 25
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=32.76 E-value=14 Score=34.62 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=30.1
Q ss_pred cCccHHHHHHHhcccChHHHhh---hhHHHHHcCCCcc
Q 022514 199 YGGHVAAYMSTLMEDEPEKYQS---HFTEYIKKGIDAD 233 (296)
Q Consensus 199 ~G~hva~Ym~~L~eed~e~yk~---qFs~yik~gi~~~ 233 (296)
.++-|.++.+.|.++|+|.|++ +|+..||.|+-.|
T Consensus 124 l~kKvl~~L~~la~~d~e~Y~kF~~~fg~~lK~Gi~eD 161 (303)
T 2gq0_A 124 LTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAED 161 (303)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhhcC
Confidence 5778899999999999998887 8999999997644
No 26
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1
Probab=32.64 E-value=24 Score=33.67 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=37.8
Q ss_pred Eeecc-cccCccccccCCCccCCCCCCCCCCCHHHHhccccCccHHHHHHHhcccChHHHhhhhHHHHHcCCCcchHHHH
Q 022514 160 GALKG-ALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEAL 238 (296)
Q Consensus 160 aa~KG-A~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik~gi~~~~~e~~ 238 (296)
|+++| |.||||.||.. +|-. +++.+++ +.+..-.+. =..-++.|+...|++++|..+
T Consensus 18 a~~~gl~~~GGl~vp~~---~p~~-------~~~~~~~-~~~~~y~~~-----------a~~i~~~f~~~~~~~~~l~~~ 75 (428)
T 1vb3_A 18 AVTQGLGKNQGLFFPHD---LPEF-------SLTEIDE-MLKLDFVTR-----------SAKILSAFIGDEIPQEILEER 75 (428)
T ss_dssp HHHHCSBGGGBCEEESS---CCCC-------CHHHHHH-HTTSCHHHH-----------HHHHHHHHHGGGSCHHHHHHH
T ss_pred HHHccCCCCCcEEeccc---cCCC-------CHHHHHH-HhCCCHHHH-----------HHHHHHHHhcCCCCHHHHHHH
Confidence 47789 79999999965 5753 3333222 122111111 112346777777899999888
Q ss_pred HHHHH
Q 022514 239 YKKVH 243 (296)
Q Consensus 239 y~~~h 243 (296)
..++-
T Consensus 76 ~~~~~ 80 (428)
T 1vb3_A 76 VRAAF 80 (428)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 87664
No 27
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=32.56 E-value=62 Score=25.71 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=49.7
Q ss_pred ccCCCccCCCCCCCCCCCHH--HHhccccCccHHHHHHHhcccChHHHhhhhHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 022514 173 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIK--KGIDADGLEALYKKVHAAIRA 248 (296)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik--~gi~~~~~e~~y~~~h~~Ir~ 248 (296)
|.-..-||.+|... =|++ .|..++++. |..++..|. |.+.+-.+.+.--. .||+|++++.+-+--...|.+
T Consensus 37 P~~k~~F~~~~~~~--~s~~~~~h~~~v~~a-l~~~v~~ld--~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~ 111 (141)
T 2r80_A 37 PQTKTYFPHFDLSH--GSAQIKGHGKKVAEA-LVEAANHID--DIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAV 111 (141)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHHH-HHHHHHTTT--CHHHHTHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhcCCCC--CCHHHHHHHHHHHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 66667888875433 3344 566666654 777888875 46666666666554 499999999988888888865
No 28
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=27.99 E-value=33 Score=34.57 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=30.8
Q ss_pred cCccHHHHHHHhcccChHHHhh---hhHHHHHcCCCcch
Q 022514 199 YGGHVAAYMSTLMEDEPEKYQS---HFTEYIKKGIDADG 234 (296)
Q Consensus 199 ~G~hva~Ym~~L~eed~e~yk~---qFs~yik~gi~~~~ 234 (296)
.++-|.++.+.|.++|+|.|++ +|+..||.|+-.|.
T Consensus 352 l~kkv~~~l~~l~~~d~e~y~~f~~~f~~~lK~G~~~D~ 390 (559)
T 1y4s_A 352 LTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDF 390 (559)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSTTTCG
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhHHhhhhhccCH
Confidence 4677889999999999998887 89999999987654
No 29
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=27.82 E-value=1e+02 Score=24.32 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=46.9
Q ss_pred ccCCCccCCCCCCCCCCCHH--HHhccccCccHHHHHHHhcccChHHHhhhhHHH----HHcCCCcchHHHHHHHHHHHH
Q 022514 173 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEY----IKKGIDADGLEALYKKVHAAI 246 (296)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~y----ik~gi~~~~~e~~y~~~h~~I 246 (296)
|.-..-||.++..+.. |++ .|-.++++ -|..++..|. |++.....+++. ...||+|++++.+-+--...|
T Consensus 40 P~~k~~F~~~~~~~~~-~~~~~~h~~~v~~-al~~~v~~ld--~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l 115 (140)
T 2zs0_A 40 GSSRALFSGVGVDDMN-SAAFTAHCLRVTG-ALNRLISQLD--QQATINADLAHLAGQHASRNLDASNFAAMGQAVMSVV 115 (140)
T ss_dssp GGGGGGGGGGTTTSTT-SHHHHHHHHHHHH-HHHHHHHTTT--CHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHhhhhcCCCCCC-CHHHHHHHHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 6666778876433221 554 35566665 5677888874 666555544443 224999999998888888888
Q ss_pred hc
Q 022514 247 RA 248 (296)
Q Consensus 247 r~ 248 (296)
.+
T Consensus 116 ~~ 117 (140)
T 2zs0_A 116 PT 117 (140)
T ss_dssp GG
T ss_pred HH
Confidence 65
No 30
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=27.25 E-value=95 Score=24.65 Aligned_cols=73 Identities=15% Similarity=0.289 Sum_probs=45.8
Q ss_pred ccCCCccCCCCCCCCCCCHH--HHhccccCccHHHHHHHhcccChHHHhhh---hHHHHH-c-CCCcchHHHHHHHHHHH
Q 022514 173 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSH---FTEYIK-K-GIDADGLEALYKKVHAA 245 (296)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~rI~G~hva~Ym~~L~eed~e~yk~q---Fs~yik-~-gi~~~~~e~~y~~~h~~ 245 (296)
|.-..-||.++.++. -|++ .|..++++. |..++..|. |++..... .+.--. . ||+|++++.+-+--...
T Consensus 44 P~~k~~F~~~~~~~~-~~~~~~~h~~~v~~~-l~~~v~~ld--d~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~ 119 (147)
T 2zs0_C 44 AAAQGLFSGVSADNP-DSADFRAHCVRVVNG-LDVAINMLN--DPAVLNEQLAHLSAQHQARAGVAAAHFDVMAEAFAEV 119 (147)
T ss_dssp GGGGGGGGGGTTTST-TSHHHHHHHHHHHHH-HHHHHHTTT--CHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCccCC-CCHHHHHHHHHHHHH-HHHHHHHcC--CHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 666667776643222 2444 455666554 667777774 66655444 444333 4 99999999888888888
Q ss_pred HhcC
Q 022514 246 IRAD 249 (296)
Q Consensus 246 Ir~~ 249 (296)
|.+-
T Consensus 120 l~~~ 123 (147)
T 2zs0_C 120 MPQV 123 (147)
T ss_dssp GGGT
T ss_pred HHHH
Confidence 8653
No 31
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.82 E-value=52 Score=20.35 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 022514 273 YEERKAKLVERLNALN 288 (296)
Q Consensus 273 ~~qrk~rv~~k~~~~~ 288 (296)
++|+-+.+.||++++.
T Consensus 12 leqkiaalkqkiaslk 27 (28)
T 3ra3_A 12 LEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5788888888888775
No 32
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=25.72 E-value=1.1e+02 Score=24.03 Aligned_cols=72 Identities=14% Similarity=0.307 Sum_probs=46.5
Q ss_pred ccCCCccCCCCCCCCCCCHH--HHhccccCccHHHHHHHhcccChHHHhhhhHHHH----HcCCCcchHHHHHHHHHHHH
Q 022514 173 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYI----KKGIDADGLEALYKKVHAAI 246 (296)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yi----k~gi~~~~~e~~y~~~h~~I 246 (296)
|.-..-||.++..+ .-|++ .|..++++. |..++..|. |++.....+++.- ..||+|++++.+-+--...|
T Consensus 40 P~~k~~F~~~~~~~-~~s~~~~~h~~~v~~~-l~~~v~~ld--~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l 115 (140)
T 1x9f_D 40 PEIKAPFSRVRGDN-IYSPEFGAHSQRVLSG-LDITISMLD--TPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVL 115 (140)
T ss_dssp GGGGGGGGGGTTTC-TTSHHHHHHHHHHHHH-HHHHHHTTT--CHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCCC-CCCHHHHHHHHHHHHH-HHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 66666777764332 22443 455666554 777888774 6665555544432 24999999998888888877
Q ss_pred hc
Q 022514 247 RA 248 (296)
Q Consensus 247 r~ 248 (296)
++
T Consensus 116 ~~ 117 (140)
T 1x9f_D 116 GD 117 (140)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 33
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=24.76 E-value=28 Score=32.11 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=28.0
Q ss_pred cCccHHHHHHHhcccChHHHhh---hhHHHHHcCCCcc
Q 022514 199 YGGHVAAYMSTLMEDEPEKYQS---HFTEYIKKGIDAD 233 (296)
Q Consensus 199 ~G~hva~Ym~~L~eed~e~yk~---qFs~yik~gi~~~ 233 (296)
.+.-|.+..+.|. +|+|.|++ +|+..||.|+-.|
T Consensus 126 i~kkvl~~l~~la-~d~e~Y~~f~~~fg~~lK~G~~eD 162 (268)
T 3pry_A 126 IVKKCLELFSELA-EDKENYKKFYEAFSKNLKLGIHED 162 (268)
T ss_dssp HHHHHHHHHHHHH-TSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHhHhhCC
Confidence 5677888999999 89998886 8999999998533
No 34
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=23.16 E-value=1.3e+02 Score=23.79 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=46.1
Q ss_pred ccCCCccCCCCCCCCCCCHH--HHhccccCccHHHHHHHhcccChHHHhhhhHH---HHH-c-CCCcchHHHHHHHHHHH
Q 022514 173 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTE---YIK-K-GIDADGLEALYKKVHAA 245 (296)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~---yik-~-gi~~~~~e~~y~~~h~~ 245 (296)
|.-..-||.++..+. -|++ .|-.++++. |..++..|. |++.....+++ --. . ||+|++++.+-+--...
T Consensus 44 P~~k~~F~~~~~~~~-~~~~~~~h~~~v~~~-l~~~v~~ld--~~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~ 119 (149)
T 1yhu_D 44 PDAVGLFGAVKGDEV-NSNEFKAHCIRVVNG-LDSSIGLLS--DPATLNEQLSHLATQHKARSGVTKGGFSAIAQSFLRV 119 (149)
T ss_dssp GGGGGGGGGGTSSST-TSHHHHHHHHHHHHH-HHHHHHHTT--CHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCC-CCHHHHHHHHHHHHH-HHHHHHHCC--CHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 666677887643322 2443 556666554 667777774 66655554444 333 3 99999999888888887
Q ss_pred Hhc
Q 022514 246 IRA 248 (296)
Q Consensus 246 Ir~ 248 (296)
|++
T Consensus 120 l~~ 122 (149)
T 1yhu_D 120 MPQ 122 (149)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 35
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=21.24 E-value=2.1e+02 Score=24.64 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCCCCCc-ceEEEEecCCcEEEEEEeeecCCCEEEEE-EeccCccccccccCCCcHHHHHHHHHHHHHHHHhhhcC
Q 022514 42 NKYNTPK-YRFVVRFTNKDIIAQIVSANIVGDSVLAA-AYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEM 115 (296)
Q Consensus 42 ~ky~s~K-pRLvVrrTNkhI~aQII~~~~~GD~tLas-AsS~EL~k~g~k~g~~N~~AAy~tGlLlAkRal~k~~l 115 (296)
.-||..+ |=|++|..+-...+-|.. .| +++|+ |. +.+.|......+++.+ +++|.
T Consensus 40 ~eY~P~~fpgli~Rl~~Pk~t~lIF~---SG-Kiv~TGAk--------------S~e~a~~a~~~~~~~L-~~lg~ 96 (188)
T 2z8u_A 40 AEYEPEQFPGLVCRLSVPKVALLIFR---SG-KVNCTGAK--------------SKEEAEIAIKKIIKEL-KDAGI 96 (188)
T ss_dssp CC-------CEEEEETTTTEEEEECT---TS-EEEEEEES--------------SHHHHHHHHHHHHHHH-HHTTC
T ss_pred CEECCCCcccEEEEcCCCcEEEEEeC---CC-eEEEecCC--------------CHHHHHHHHHHHHHHH-HhcCC
Confidence 4677776 778888877666665544 36 77765 33 4556666666667654 45554
No 36
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=20.02 E-value=1.5e+02 Score=23.38 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=47.0
Q ss_pred ccCCCccCCC-CCCCCCCCHH--HHhccccCccHHHHHHHhcccChHHHhhhhHHHHH--cCCCcchHHHHHHHHHHHHh
Q 022514 173 PHSDKRFAGF-SKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIK--KGIDADGLEALYKKVHAAIR 247 (296)
Q Consensus 173 Ph~~~~fpgy-~~e~k~~~ae--~~~~rI~G~hva~Ym~~L~eed~e~yk~qFs~yik--~gi~~~~~e~~y~~~h~~Ir 247 (296)
|.-..-||.+ |... =|++ .|..++++. |..++..|. |-..+-.+.+.--. .||+|++++.+-+--...|.
T Consensus 37 P~~~~~F~~~~~~~~--~s~~~~~h~~~v~~a-l~~~v~~ld--~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~ll~~l~ 111 (142)
T 3d1k_A 37 PQTKIYFSHWPDVTP--GSPNIKAHGKKVMGG-IALAVSKID--DLKTGLMELSEQHAYKLRVDPSNFKILNHCILVVIS 111 (142)
T ss_dssp GGGGGGGTTSSCCST--TCHHHHHHHHHHHHH-HHHHHHTTT--CHHHHHHHHHHHHHHTSCCCGGGHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCC--CCHHHHHHHHHHHHH-HHHHHHhHH--HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 6666778876 3222 2333 455665553 677788774 35555556665444 59999999998888888886
Q ss_pred c
Q 022514 248 A 248 (296)
Q Consensus 248 ~ 248 (296)
+
T Consensus 112 ~ 112 (142)
T 3d1k_A 112 T 112 (142)
T ss_dssp H
T ss_pred H
Confidence 5
Done!