Query 022515
Match_columns 296
No_of_seqs 227 out of 2277
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 1.7E-37 3.8E-42 265.3 16.5 197 70-273 42-241 (241)
2 KOG3178 Hydroxyindole-O-methyl 100.0 1.5E-36 3.3E-41 261.3 20.2 275 14-296 5-342 (342)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 1.5E-33 3.3E-38 249.0 22.4 245 27-283 2-305 (306)
4 TIGR00740 methyltransferase, p 99.8 8.9E-20 1.9E-24 155.7 10.0 149 129-285 52-228 (239)
5 COG2226 UbiE Methylase involve 99.8 1.5E-18 3.2E-23 145.3 15.8 160 117-286 40-226 (238)
6 PF01209 Ubie_methyltran: ubiE 99.8 1.5E-19 3.2E-24 152.7 8.8 158 128-296 45-233 (233)
7 PTZ00098 phosphoethanolamine N 99.8 3.7E-18 8.1E-23 147.4 17.0 156 118-286 42-204 (263)
8 PLN02233 ubiquinone biosynthes 99.8 3.8E-18 8.3E-23 147.2 16.7 160 128-295 71-260 (261)
9 PRK15451 tRNA cmo(5)U34 methyl 99.8 2.1E-18 4.6E-23 147.8 13.0 146 129-282 55-228 (247)
10 TIGR02752 MenG_heptapren 2-hep 99.8 1.1E-17 2.4E-22 142.1 15.6 169 118-296 35-231 (231)
11 PLN02244 tocopherol O-methyltr 99.8 3.9E-17 8.4E-22 146.1 17.1 152 129-286 117-280 (340)
12 PRK14103 trans-aconitate 2-met 99.7 9.1E-17 2E-21 138.5 15.1 152 118-281 19-181 (255)
13 PLN02490 MPBQ/MSBQ methyltrans 99.7 8E-17 1.7E-21 142.4 13.2 141 129-286 112-258 (340)
14 PLN02336 phosphoethanolamine N 99.7 2.1E-16 4.5E-21 148.1 16.4 151 119-285 257-415 (475)
15 PRK00216 ubiE ubiquinone/menaq 99.7 3.8E-16 8.2E-21 133.0 16.5 168 119-296 42-238 (239)
16 TIGR00452 methyltransferase, p 99.7 3E-16 6.6E-21 137.7 15.1 151 120-285 113-274 (314)
17 PF12847 Methyltransf_18: Meth 99.7 8.1E-17 1.8E-21 121.0 9.9 99 130-231 1-111 (112)
18 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 5.1E-16 1.1E-20 130.9 15.5 168 119-296 30-223 (223)
19 smart00828 PKS_MT Methyltransf 99.7 2.6E-16 5.7E-21 133.0 13.7 137 132-286 1-146 (224)
20 PRK15068 tRNA mo(5)U34 methylt 99.7 4.1E-16 8.8E-21 138.2 15.3 145 130-285 122-275 (322)
21 PRK11207 tellurite resistance 99.7 1E-15 2.3E-20 126.6 14.4 142 117-282 19-168 (197)
22 PRK11873 arsM arsenite S-adeno 99.7 1.2E-15 2.6E-20 132.7 15.2 146 128-284 75-230 (272)
23 KOG1540 Ubiquinone biosynthesi 99.7 1.1E-15 2.5E-20 126.0 13.7 145 129-281 99-278 (296)
24 PF02353 CMAS: Mycolic acid cy 99.7 5.1E-16 1.1E-20 134.1 10.9 161 117-286 51-219 (273)
25 PLN02396 hexaprenyldihydroxybe 99.7 6.3E-16 1.4E-20 136.2 11.6 145 130-285 131-290 (322)
26 COG2230 Cfa Cyclopropane fatty 99.7 1.8E-15 3.8E-20 129.1 13.5 158 117-286 61-225 (283)
27 PF13847 Methyltransf_31: Meth 99.7 2.6E-16 5.6E-21 125.0 7.4 136 130-276 3-152 (152)
28 PRK08317 hypothetical protein; 99.6 5.3E-15 1.1E-19 125.9 15.7 157 120-285 11-177 (241)
29 PRK11036 putative S-adenosyl-L 99.6 1.5E-15 3.3E-20 130.8 12.1 149 129-287 43-210 (255)
30 PRK06922 hypothetical protein; 99.6 1.4E-15 3.1E-20 142.4 12.2 143 90-237 378-543 (677)
31 PF13489 Methyltransf_23: Meth 99.6 1.8E-15 3.9E-20 120.8 10.6 135 128-281 20-160 (161)
32 PRK01683 trans-aconitate 2-met 99.6 1.1E-14 2.3E-19 125.8 14.1 107 117-230 20-129 (258)
33 TIGR02021 BchM-ChlM magnesium 99.6 8.8E-15 1.9E-19 123.2 13.1 184 90-286 15-208 (219)
34 TIGR00477 tehB tellurite resis 99.6 1.3E-14 2.7E-19 120.0 13.7 142 118-283 20-168 (195)
35 PRK06202 hypothetical protein; 99.6 3.6E-14 7.8E-19 120.6 14.9 146 129-285 59-223 (232)
36 PF08241 Methyltransf_11: Meth 99.6 5.7E-15 1.2E-19 107.1 8.4 89 135-229 1-95 (95)
37 COG4106 Tam Trans-aconitate me 99.6 1.5E-14 3.2E-19 116.7 9.8 166 118-296 20-203 (257)
38 TIGR02072 BioC biotin biosynth 99.6 5.4E-14 1.2E-18 119.7 14.0 137 130-283 34-175 (240)
39 PRK05785 hypothetical protein; 99.6 8.3E-14 1.8E-18 117.6 14.8 149 130-296 51-224 (226)
40 PRK10258 biotin biosynthesis p 99.6 1.2E-13 2.7E-18 118.7 15.3 148 116-279 30-182 (251)
41 PF08242 Methyltransf_12: Meth 99.6 1.2E-15 2.6E-20 112.1 2.4 88 135-227 1-99 (99)
42 smart00138 MeTrc Methyltransfe 99.6 1.3E-13 2.8E-18 119.1 15.3 100 129-231 98-242 (264)
43 KOG1270 Methyltransferases [Co 99.6 1.3E-14 2.9E-19 120.4 8.8 141 131-283 90-248 (282)
44 PF06080 DUF938: Protein of un 99.6 1.2E-13 2.6E-18 112.4 13.9 162 129-296 23-204 (204)
45 PRK07580 Mg-protoporphyrin IX 99.5 1.5E-13 3.2E-18 116.6 14.8 142 129-286 62-216 (230)
46 PLN03075 nicotianamine synthas 99.5 8E-14 1.7E-18 120.3 12.6 99 129-231 122-233 (296)
47 PRK08287 cobalt-precorrin-6Y C 99.5 1.4E-13 3E-18 113.0 13.5 126 121-284 24-156 (187)
48 PLN02336 phosphoethanolamine N 99.5 1.1E-13 2.5E-18 129.6 14.0 145 117-281 26-179 (475)
49 TIGR03587 Pse_Me-ase pseudamin 99.5 6.9E-14 1.5E-18 116.1 10.6 104 128-236 41-147 (204)
50 PRK12335 tellurite resistance 99.5 1.7E-13 3.7E-18 120.0 13.6 132 130-283 120-258 (287)
51 TIGR00537 hemK_rel_arch HemK-r 99.5 3.4E-13 7.3E-18 110.0 14.1 134 129-295 18-176 (179)
52 PRK11705 cyclopropane fatty ac 99.5 2.3E-13 5.1E-18 123.3 14.5 154 119-286 158-314 (383)
53 PF13649 Methyltransf_25: Meth 99.5 5.2E-14 1.1E-18 103.8 7.7 89 134-225 1-101 (101)
54 COG2227 UbiG 2-polyprenyl-3-me 99.5 7.8E-14 1.7E-18 115.2 8.6 143 130-285 59-216 (243)
55 TIGR03438 probable methyltrans 99.5 3.1E-13 6.8E-18 119.0 12.5 98 129-229 62-175 (301)
56 PRK04266 fibrillarin; Provisio 99.5 1.4E-12 3.1E-17 109.7 15.5 134 128-288 70-214 (226)
57 PLN02585 magnesium protoporphy 99.5 3.2E-13 6.9E-18 118.8 11.9 141 130-286 144-301 (315)
58 TIGR03840 TMPT_Se_Te thiopurin 99.5 2E-12 4.3E-17 107.9 15.7 132 129-284 33-187 (213)
59 PRK00107 gidB 16S rRNA methylt 99.5 2.5E-12 5.5E-17 105.0 14.7 119 129-285 44-170 (187)
60 PF03848 TehB: Tellurite resis 99.5 7.4E-13 1.6E-17 107.6 11.4 110 118-234 20-136 (192)
61 PRK15001 SAM-dependent 23S rib 99.5 1.3E-12 2.7E-17 117.4 14.1 109 118-231 218-340 (378)
62 TIGR00138 gidB 16S rRNA methyl 99.4 1.3E-12 2.7E-17 106.5 11.7 92 131-231 43-142 (181)
63 KOG4300 Predicted methyltransf 99.4 7.9E-13 1.7E-17 106.0 9.5 174 103-287 51-235 (252)
64 PF08003 Methyltransf_9: Prote 99.4 2.5E-12 5.4E-17 110.1 12.3 144 130-286 115-269 (315)
65 PRK05134 bifunctional 3-demeth 99.4 3.1E-12 6.7E-17 108.8 12.5 144 129-284 47-205 (233)
66 PF05891 Methyltransf_PK: AdoM 99.4 9.5E-13 2.1E-17 107.7 8.4 142 130-288 55-205 (218)
67 PRK13255 thiopurine S-methyltr 99.4 1.4E-11 2.9E-16 103.3 15.1 133 128-284 35-190 (218)
68 PF05401 NodS: Nodulation prot 99.4 1.1E-12 2.4E-17 105.5 7.4 133 128-285 41-180 (201)
69 PRK09489 rsmC 16S ribosomal RN 99.4 1.8E-11 3.8E-16 109.3 15.4 109 119-232 187-304 (342)
70 TIGR02081 metW methionine bios 99.4 6.7E-12 1.5E-16 103.7 11.6 141 129-286 12-169 (194)
71 TIGR02469 CbiT precorrin-6Y C5 99.4 7E-12 1.5E-16 95.5 10.1 101 120-230 11-121 (124)
72 TIGR03534 RF_mod_PrmC protein- 99.3 2.2E-11 4.7E-16 104.6 13.9 124 130-285 87-242 (251)
73 TIGR01983 UbiG ubiquinone bios 99.3 1.3E-11 2.8E-16 104.3 11.7 142 130-284 45-203 (224)
74 PRK09328 N5-glutamine S-adenos 99.3 4.1E-11 8.8E-16 104.4 15.0 136 128-295 106-274 (275)
75 PRK00517 prmA ribosomal protei 99.3 4.8E-11 1E-15 102.5 14.5 125 129-295 118-249 (250)
76 PF05175 MTS: Methyltransferas 99.3 9.8E-12 2.1E-16 100.4 9.2 99 130-231 31-140 (170)
77 PTZ00146 fibrillarin; Provisio 99.3 1.5E-10 3.3E-15 99.7 16.1 132 128-286 130-273 (293)
78 KOG2361 Predicted methyltransf 99.3 1.3E-11 2.8E-16 101.5 7.7 146 132-282 73-235 (264)
79 PLN02232 ubiquinone biosynthes 99.3 2.5E-11 5.4E-16 97.1 9.1 128 158-293 1-157 (160)
80 PRK14968 putative methyltransf 99.3 2E-10 4.2E-15 94.2 14.7 135 129-296 22-188 (188)
81 PRK00121 trmB tRNA (guanine-N( 99.3 1.4E-11 3E-16 102.4 7.7 99 130-231 40-156 (202)
82 COG2242 CobL Precorrin-6B meth 99.3 1.4E-10 3E-15 92.7 12.8 101 121-232 27-136 (187)
83 PF07021 MetW: Methionine bios 99.3 7.8E-11 1.7E-15 94.7 11.5 143 128-287 11-170 (193)
84 PRK13256 thiopurine S-methyltr 99.3 2.8E-10 6.1E-15 95.1 14.9 103 129-236 42-168 (226)
85 PRK00377 cbiT cobalt-precorrin 99.2 1.1E-10 2.4E-15 96.7 12.3 94 128-229 38-143 (198)
86 TIGR00536 hemK_fam HemK family 99.2 2.5E-10 5.5E-15 99.8 15.1 132 132-295 116-281 (284)
87 PF12147 Methyltransf_20: Puta 99.2 1.9E-10 4.2E-15 97.6 13.7 156 129-296 134-311 (311)
88 PRK14966 unknown domain/N5-glu 99.2 3.5E-10 7.7E-15 102.0 15.2 135 129-295 250-417 (423)
89 COG2813 RsmC 16S RNA G1207 met 99.2 5E-10 1.1E-14 96.1 15.3 111 117-232 147-267 (300)
90 PRK13944 protein-L-isoaspartat 99.2 7.1E-11 1.5E-15 98.4 9.9 99 119-230 63-172 (205)
91 PRK11805 N5-glutamine S-adenos 99.2 2.4E-10 5.2E-15 100.8 13.7 95 132-229 135-261 (307)
92 TIGR03533 L3_gln_methyl protei 99.2 3.4E-10 7.3E-15 98.9 13.8 122 130-284 121-274 (284)
93 TIGR00091 tRNA (guanine-N(7)-) 99.2 5.4E-11 1.2E-15 98.2 7.8 98 130-231 16-132 (194)
94 COG4123 Predicted O-methyltran 99.2 3E-10 6.5E-15 95.5 11.7 126 128-285 42-195 (248)
95 PF05724 TPMT: Thiopurine S-me 99.2 2.8E-10 6.1E-15 95.2 11.3 133 128-284 35-190 (218)
96 PHA03411 putative methyltransf 99.2 3.1E-10 6.6E-15 96.8 11.6 124 130-278 64-208 (279)
97 PRK13942 protein-L-isoaspartat 99.2 2.4E-10 5.2E-15 95.7 10.4 101 118-231 66-176 (212)
98 PRK01544 bifunctional N5-gluta 99.1 8.4E-10 1.8E-14 103.7 14.3 133 130-294 138-304 (506)
99 KOG1271 Methyltransferases [Ge 99.1 2.5E-10 5.5E-15 89.9 9.0 124 132-287 69-208 (227)
100 PRK11088 rrmA 23S rRNA methylt 99.1 1.5E-10 3.3E-15 100.7 8.6 90 130-231 85-181 (272)
101 TIGR00080 pimt protein-L-isoas 99.1 3E-10 6.5E-15 95.3 9.7 99 119-230 68-176 (215)
102 PRK04457 spermidine synthase; 99.1 1.7E-10 3.8E-15 99.5 8.1 98 129-230 65-176 (262)
103 TIGR00406 prmA ribosomal prote 99.1 7.2E-10 1.6E-14 97.1 11.8 120 129-286 158-285 (288)
104 PRK07402 precorrin-6B methylas 99.1 6.6E-10 1.4E-14 91.9 10.6 102 120-232 32-143 (196)
105 PRK14967 putative methyltransf 99.1 2.3E-09 4.9E-14 90.6 13.5 102 128-233 34-161 (223)
106 cd02440 AdoMet_MTases S-adenos 99.1 7.6E-10 1.6E-14 80.6 8.2 93 133-230 1-103 (107)
107 PF13659 Methyltransf_26: Meth 99.1 4E-10 8.8E-15 85.0 6.8 96 132-231 2-115 (117)
108 PRK14121 tRNA (guanine-N(7)-)- 99.1 1.1E-09 2.4E-14 98.2 10.6 100 129-232 121-236 (390)
109 PRK11188 rrmJ 23S rRNA methylt 99.1 2.2E-09 4.9E-14 89.5 11.5 96 128-231 49-165 (209)
110 KOG2899 Predicted methyltransf 99.0 8.3E-10 1.8E-14 90.9 8.5 153 118-280 46-253 (288)
111 TIGR01177 conserved hypothetic 99.0 3.4E-09 7.4E-14 94.7 12.2 121 128-285 180-316 (329)
112 PF06325 PrmA: Ribosomal prote 99.0 3.8E-09 8.1E-14 92.0 12.0 127 129-295 160-294 (295)
113 TIGR03704 PrmC_rel_meth putati 99.0 5.3E-09 1.2E-13 89.7 12.7 123 130-284 86-240 (251)
114 COG2264 PrmA Ribosomal protein 99.0 6E-09 1.3E-13 90.0 12.2 129 128-293 160-297 (300)
115 PRK00312 pcm protein-L-isoaspa 99.0 5.2E-09 1.1E-13 87.6 10.5 98 119-231 69-175 (212)
116 PRK00811 spermidine synthase; 98.9 3.4E-09 7.4E-14 92.5 8.7 98 129-229 75-189 (283)
117 COG2519 GCD14 tRNA(1-methylade 98.9 1.5E-08 3.2E-13 84.8 11.9 120 104-235 66-199 (256)
118 COG2890 HemK Methylase of poly 98.9 2.3E-08 4.9E-13 87.0 13.6 130 133-294 113-274 (280)
119 TIGR00438 rrmJ cell division p 98.9 1E-08 2.3E-13 84.2 9.6 94 128-230 30-145 (188)
120 PF05148 Methyltransf_8: Hypot 98.9 3E-08 6.5E-13 80.7 11.7 159 91-294 30-195 (219)
121 PRK01581 speE spermidine synth 98.9 7.9E-09 1.7E-13 91.6 8.8 99 129-230 149-267 (374)
122 PF01739 CheR: CheR methyltran 98.9 3.2E-09 6.9E-14 87.2 5.5 99 130-231 31-175 (196)
123 COG4976 Predicted methyltransf 98.9 5.5E-09 1.2E-13 85.5 6.7 146 118-285 115-266 (287)
124 PRK13943 protein-L-isoaspartat 98.8 2E-08 4.2E-13 88.9 10.2 100 119-231 71-180 (322)
125 PLN02366 spermidine synthase 98.8 1.6E-08 3.5E-13 88.9 9.6 98 129-229 90-204 (308)
126 COG1352 CheR Methylase of chem 98.8 3.6E-08 7.7E-13 84.5 11.0 99 130-231 96-241 (268)
127 smart00650 rADc Ribosomal RNA 98.8 1.5E-08 3.2E-13 81.8 8.3 82 118-204 3-91 (169)
128 TIGR00417 speE spermidine synt 98.8 1.4E-08 3E-13 88.2 8.5 99 129-230 71-185 (270)
129 PF04672 Methyltransf_19: S-ad 98.8 2.3E-08 4.9E-13 85.0 9.4 142 130-281 68-233 (267)
130 PRK03612 spermidine synthase; 98.8 3.3E-08 7.2E-13 93.4 11.1 98 129-230 296-414 (521)
131 PRK10611 chemotaxis methyltran 98.8 1.8E-08 3.8E-13 87.5 8.1 99 130-231 115-262 (287)
132 PF08704 GCD14: tRNA methyltra 98.8 6.5E-08 1.4E-12 82.1 11.3 142 104-285 12-172 (247)
133 PLN02781 Probable caffeoyl-CoA 98.8 3.9E-08 8.4E-13 83.5 9.5 99 128-234 66-181 (234)
134 KOG3010 Methyltransferase [Gen 98.8 1.7E-08 3.7E-13 83.3 6.9 97 130-233 33-139 (261)
135 PF01135 PCMT: Protein-L-isoas 98.8 1.7E-08 3.7E-13 83.9 7.0 102 118-232 62-173 (209)
136 COG2518 Pcm Protein-L-isoaspar 98.7 6.1E-08 1.3E-12 79.3 9.3 100 118-232 62-170 (209)
137 PRK10901 16S rRNA methyltransf 98.7 8E-08 1.7E-12 88.8 10.9 104 128-234 242-375 (427)
138 PLN02672 methionine S-methyltr 98.7 8.4E-08 1.8E-12 96.1 11.5 124 131-286 119-305 (1082)
139 PF05219 DREV: DREV methyltran 98.7 1.6E-07 3.5E-12 79.0 11.0 140 130-286 94-242 (265)
140 TIGR00563 rsmB ribosomal RNA s 98.7 7.5E-08 1.6E-12 89.1 9.9 106 128-236 236-373 (426)
141 PHA03412 putative methyltransf 98.7 1.4E-07 3E-12 79.0 10.3 93 131-227 50-158 (241)
142 PF02390 Methyltransf_4: Putat 98.7 8.8E-08 1.9E-12 78.9 8.4 97 132-232 19-134 (195)
143 PRK14904 16S rRNA methyltransf 98.6 1.9E-07 4.1E-12 86.8 10.7 105 128-235 248-381 (445)
144 PRK14902 16S rRNA methyltransf 98.6 2.2E-07 4.7E-12 86.5 10.8 104 128-234 248-382 (444)
145 PRK13168 rumA 23S rRNA m(5)U19 98.6 4.7E-07 1E-11 84.2 12.5 120 128-287 295-427 (443)
146 PRK14901 16S rRNA methyltransf 98.6 2.5E-07 5.4E-12 85.8 10.3 104 128-234 250-387 (434)
147 PF01596 Methyltransf_3: O-met 98.6 6E-08 1.3E-12 80.3 5.3 98 128-234 43-157 (205)
148 KOG3045 Predicted RNA methylas 98.6 1.3E-06 2.8E-11 73.0 13.0 156 92-294 139-301 (325)
149 PF03291 Pox_MCEL: mRNA cappin 98.6 1.8E-07 3.9E-12 83.1 8.0 99 130-232 62-187 (331)
150 PRK14896 ksgA 16S ribosomal RN 98.6 3E-07 6.4E-12 79.4 8.9 82 117-203 18-104 (258)
151 PRK14903 16S rRNA methyltransf 98.6 4.4E-07 9.5E-12 83.9 10.4 105 128-235 235-370 (431)
152 PRK11727 23S rRNA mA1618 methy 98.5 1.1E-06 2.3E-11 77.7 11.6 145 130-285 114-293 (321)
153 TIGR00446 nop2p NOL1/NOP2/sun 98.5 7.3E-07 1.6E-11 77.2 10.3 105 128-235 69-203 (264)
154 TIGR00755 ksgA dimethyladenosi 98.5 3.5E-07 7.6E-12 78.7 8.3 92 117-216 18-116 (253)
155 PLN02476 O-methyltransferase 98.5 4.9E-07 1.1E-11 78.0 8.9 100 128-235 116-232 (278)
156 COG4122 Predicted O-methyltran 98.5 4.3E-07 9.3E-12 75.4 8.2 101 128-237 57-171 (219)
157 PRK00274 ksgA 16S ribosomal RN 98.5 3.4E-07 7.3E-12 79.6 7.6 74 118-195 32-111 (272)
158 PF08123 DOT1: Histone methyla 98.5 3.6E-07 7.9E-12 75.6 7.3 109 119-235 33-162 (205)
159 PRK04148 hypothetical protein; 98.5 1.2E-06 2.5E-11 67.0 9.4 99 118-232 6-110 (134)
160 PLN02823 spermine synthase 98.5 5.9E-07 1.3E-11 79.9 8.6 97 129-229 102-218 (336)
161 PF10294 Methyltransf_16: Puta 98.5 6.9E-07 1.5E-11 72.3 7.7 102 128-234 43-159 (173)
162 PF11968 DUF3321: Putative met 98.4 1.3E-06 2.8E-11 71.7 8.9 120 131-287 52-184 (219)
163 KOG1541 Predicted protein carb 98.4 1.1E-06 2.3E-11 71.9 8.2 93 131-229 51-158 (270)
164 COG0421 SpeE Spermidine syntha 98.4 7.8E-07 1.7E-11 77.0 7.9 97 130-230 76-189 (282)
165 PTZ00338 dimethyladenosine tra 98.4 1E-06 2.2E-11 77.2 8.3 90 117-211 25-122 (294)
166 KOG1661 Protein-L-isoaspartate 98.4 8.3E-07 1.8E-11 71.9 6.8 102 119-231 71-193 (237)
167 KOG1975 mRNA cap methyltransfe 98.4 7.5E-07 1.6E-11 76.7 6.0 105 118-229 108-235 (389)
168 PF09243 Rsm22: Mitochondrial 98.4 2.3E-06 5E-11 74.4 9.3 100 130-234 33-142 (274)
169 PRK11783 rlmL 23S rRNA m(2)G24 98.4 2.4E-06 5.2E-11 83.7 10.2 98 129-230 537-655 (702)
170 PLN02589 caffeoyl-CoA O-methyl 98.3 1.8E-06 4E-11 73.5 8.0 98 128-234 77-192 (247)
171 PF05185 PRMT5: PRMT5 arginine 98.3 1.7E-06 3.7E-11 80.0 8.4 126 92-227 153-293 (448)
172 PRK15128 23S rRNA m(5)C1962 me 98.3 4.4E-06 9.6E-11 76.2 10.4 98 129-231 219-339 (396)
173 COG2263 Predicted RNA methylas 98.3 1.5E-06 3.2E-11 69.6 6.0 66 130-196 45-115 (198)
174 TIGR03439 methyl_EasF probable 98.3 3E-06 6.6E-11 74.8 8.3 137 83-230 35-196 (319)
175 PRK00536 speE spermidine synth 98.3 3.7E-06 8E-11 72.1 8.5 88 129-229 71-169 (262)
176 KOG1500 Protein arginine N-met 98.3 2.5E-06 5.4E-11 73.8 7.4 95 130-228 177-279 (517)
177 TIGR00479 rumA 23S rRNA (uraci 98.3 4.7E-06 1E-10 77.3 9.6 91 128-229 290-394 (431)
178 PRK10909 rsmD 16S rRNA m(2)G96 98.3 2.3E-06 4.9E-11 70.7 6.5 97 130-234 53-161 (199)
179 PF01564 Spermine_synth: Sperm 98.3 1.5E-06 3.1E-11 74.4 5.5 100 129-231 75-191 (246)
180 PRK03522 rumB 23S rRNA methylu 98.3 3.3E-06 7.1E-11 75.1 7.9 65 130-196 173-247 (315)
181 COG3963 Phospholipid N-methylt 98.2 9.6E-06 2.1E-10 63.5 9.1 115 114-233 34-158 (194)
182 PF04816 DUF633: Family of unk 98.2 1E-05 2.2E-10 67.1 9.7 125 134-295 1-138 (205)
183 KOG0820 Ribosomal RNA adenine 98.2 3.1E-06 6.7E-11 71.3 6.7 76 116-195 46-129 (315)
184 TIGR00478 tly hemolysin TlyA f 98.2 7.5E-06 1.6E-10 68.9 8.7 137 119-286 65-219 (228)
185 COG0220 Predicted S-adenosylme 98.2 1.9E-06 4.2E-11 72.3 4.8 96 132-231 50-164 (227)
186 KOG1499 Protein arginine N-met 98.2 3.5E-06 7.6E-11 73.7 6.5 96 129-228 59-164 (346)
187 KOG2940 Predicted methyltransf 98.1 1.3E-05 2.9E-10 65.9 7.4 142 129-282 71-225 (325)
188 KOG1331 Predicted methyltransf 98.1 8.4E-06 1.8E-10 69.4 6.1 98 129-234 44-146 (293)
189 PRK00050 16S rRNA m(4)C1402 me 98.1 9.3E-06 2E-10 70.9 6.5 78 116-195 7-96 (296)
190 TIGR02085 meth_trns_rumB 23S r 98.0 1.3E-05 2.9E-10 72.8 6.2 90 130-230 233-333 (374)
191 COG2521 Predicted archaeal met 98.0 4.5E-05 9.7E-10 63.1 8.5 128 128-285 132-278 (287)
192 PRK01544 bifunctional N5-gluta 98.0 2.4E-05 5.2E-10 73.8 8.0 98 130-231 347-462 (506)
193 TIGR00095 RNA methyltransferas 97.9 2.2E-05 4.7E-10 64.4 6.4 98 130-235 49-162 (189)
194 KOG3191 Predicted N6-DNA-methy 97.9 0.00037 8.1E-09 55.5 11.7 66 131-196 44-117 (209)
195 COG0030 KsgA Dimethyladenosine 97.9 6.6E-05 1.4E-09 64.0 8.2 84 117-205 19-110 (259)
196 PF08100 Dimerisation: Dimeris 97.9 7.5E-06 1.6E-10 51.6 1.8 37 30-66 1-39 (51)
197 PRK04338 N(2),N(2)-dimethylgua 97.8 6.3E-05 1.4E-09 68.4 7.2 91 131-230 58-157 (382)
198 KOG2904 Predicted methyltransf 97.8 5.3E-05 1.2E-09 64.1 5.6 67 130-196 148-229 (328)
199 PF02527 GidB: rRNA small subu 97.7 6.1E-05 1.3E-09 61.3 5.5 90 133-231 51-148 (184)
200 COG4262 Predicted spermidine s 97.7 0.00018 3.9E-09 63.3 8.1 93 129-230 288-406 (508)
201 PF03141 Methyltransf_29: Puta 97.7 1.2E-05 2.6E-10 73.7 0.8 97 129-233 116-221 (506)
202 KOG3987 Uncharacterized conser 97.7 2E-05 4.2E-10 63.9 1.8 146 130-286 112-262 (288)
203 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 2.6E-05 5.6E-10 66.6 2.3 86 178-284 138-239 (256)
204 COG0357 GidB Predicted S-adeno 97.6 0.00042 9.1E-09 57.5 9.1 120 131-285 68-196 (215)
205 PF09445 Methyltransf_15: RNA 97.6 4.5E-05 9.7E-10 60.5 2.7 63 132-196 1-76 (163)
206 PF13679 Methyltransf_32: Meth 97.6 0.00018 3.8E-09 56.1 6.1 85 128-216 23-122 (141)
207 TIGR02143 trmA_only tRNA (urac 97.6 0.00017 3.7E-09 65.0 6.7 52 132-185 199-256 (353)
208 COG4798 Predicted methyltransf 97.5 0.00097 2.1E-08 53.8 9.6 137 128-281 46-202 (238)
209 PF02475 Met_10: Met-10+ like- 97.5 0.00016 3.4E-09 59.7 4.6 91 128-227 99-198 (200)
210 COG3897 Predicted methyltransf 97.4 0.0011 2.4E-08 53.5 8.9 104 128-237 77-185 (218)
211 COG4076 Predicted RNA methylas 97.4 0.00028 6E-09 56.5 5.4 95 132-231 34-135 (252)
212 KOG3115 Methyltransferase-like 97.4 0.00019 4.1E-09 58.1 4.5 99 132-233 62-185 (249)
213 COG2384 Predicted SAM-dependen 97.4 0.0032 7E-08 51.9 11.7 119 130-285 16-144 (226)
214 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00032 6.9E-09 60.7 6.2 97 116-220 18-123 (262)
215 PF03059 NAS: Nicotianamine sy 97.4 0.00048 1E-08 59.4 7.1 97 130-230 120-229 (276)
216 PRK11760 putative 23S rRNA C24 97.4 0.0055 1.2E-07 54.2 13.7 129 128-286 209-342 (357)
217 COG5459 Predicted rRNA methyla 97.4 0.00011 2.3E-09 64.4 2.9 101 131-234 114-228 (484)
218 PRK05031 tRNA (uracil-5-)-meth 97.4 0.00029 6.4E-09 63.8 5.7 52 132-185 208-265 (362)
219 KOG3420 Predicted RNA methylas 97.3 0.00015 3.4E-09 55.5 2.8 68 130-199 48-124 (185)
220 TIGR00027 mthyl_TIGR00027 meth 97.3 0.0024 5.1E-08 55.1 10.5 145 129-282 80-248 (260)
221 PF01170 UPF0020: Putative RNA 97.3 0.00078 1.7E-08 54.8 6.9 102 117-220 17-143 (179)
222 KOG2915 tRNA(1-methyladenosine 97.3 0.0044 9.6E-08 52.7 11.4 120 104-234 77-213 (314)
223 PF01728 FtsJ: FtsJ-like methy 97.3 0.00039 8.4E-09 56.6 4.9 105 119-231 11-139 (181)
224 PF07942 N2227: N2227-like pro 97.3 0.0067 1.5E-07 52.2 12.5 136 129-284 55-242 (270)
225 TIGR01444 fkbM_fam methyltrans 97.2 0.00067 1.4E-08 52.7 5.4 53 133-185 1-59 (143)
226 COG0500 SmtA SAM-dependent met 97.2 0.0029 6.2E-08 49.1 9.1 96 134-236 52-160 (257)
227 PF07091 FmrO: Ribosomal RNA m 97.2 0.00065 1.4E-08 57.3 5.3 99 129-232 104-209 (251)
228 PF13578 Methyltransf_24: Meth 97.2 0.00023 4.9E-09 52.5 2.1 91 135-231 1-105 (106)
229 COG0293 FtsJ 23S rRNA methylas 97.1 0.0049 1.1E-07 50.7 9.1 106 118-232 34-160 (205)
230 PRK11933 yebU rRNA (cytosine-C 97.1 0.0043 9.3E-08 58.0 9.8 102 128-232 111-243 (470)
231 PRK11783 rlmL 23S rRNA m(2)G24 97.0 0.0049 1.1E-07 60.8 10.2 113 116-232 177-348 (702)
232 PF01269 Fibrillarin: Fibrilla 97.0 0.016 3.4E-07 48.2 11.4 133 128-287 71-215 (229)
233 KOG3201 Uncharacterized conser 96.9 0.00042 9.2E-09 54.1 1.8 97 130-231 29-140 (201)
234 KOG1663 O-methyltransferase [S 96.9 0.0063 1.4E-07 50.5 8.5 100 128-236 71-188 (237)
235 KOG1269 SAM-dependent methyltr 96.9 0.00096 2.1E-08 60.0 4.0 104 128-237 108-221 (364)
236 PF03602 Cons_hypoth95: Conser 96.9 0.002 4.3E-08 52.6 5.4 99 130-236 42-157 (183)
237 COG1889 NOP1 Fibrillarin-like 96.9 0.045 9.7E-07 44.7 12.9 140 128-295 74-228 (231)
238 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0022 4.7E-08 56.9 6.0 101 128-231 44-183 (311)
239 PF11312 DUF3115: Protein of u 96.8 0.003 6.4E-08 55.0 6.3 100 131-233 87-244 (315)
240 COG4301 Uncharacterized conser 96.8 0.0051 1.1E-07 51.6 7.2 101 129-232 77-194 (321)
241 COG3315 O-Methyltransferase in 96.8 0.0052 1.1E-07 54.0 7.7 146 130-282 92-262 (297)
242 COG2265 TrmA SAM-dependent met 96.8 0.0069 1.5E-07 56.0 8.8 93 128-231 291-396 (432)
243 COG1092 Predicted SAM-dependen 96.7 0.0038 8.3E-08 56.7 6.2 96 130-232 217-337 (393)
244 TIGR00308 TRM1 tRNA(guanine-26 96.7 0.0048 1E-07 56.0 6.8 92 132-232 46-148 (374)
245 TIGR02987 met_A_Alw26 type II 96.6 0.0074 1.6E-07 57.6 7.7 66 130-195 31-118 (524)
246 TIGR00006 S-adenosyl-methyltra 96.5 0.0088 1.9E-07 52.5 6.7 68 116-185 8-80 (305)
247 KOG2798 Putative trehalase [Ca 96.4 0.07 1.5E-06 46.5 11.8 137 131-285 151-338 (369)
248 KOG1709 Guanidinoacetate methy 96.3 0.031 6.7E-07 46.1 8.4 100 128-232 99-207 (271)
249 PF01795 Methyltransf_5: MraW 96.1 0.011 2.5E-07 51.8 5.5 68 116-185 8-80 (310)
250 PF04989 CmcI: Cephalosporin h 96.1 0.022 4.8E-07 46.9 6.7 100 130-235 32-151 (206)
251 COG2520 Predicted methyltransf 95.9 0.059 1.3E-06 48.1 9.0 99 129-237 187-295 (341)
252 KOG4589 Cell division protein 95.8 0.046 9.9E-07 44.1 7.3 70 120-195 60-142 (232)
253 PF10672 Methyltrans_SAM: S-ad 95.8 0.025 5.4E-07 49.3 6.2 98 130-231 123-238 (286)
254 COG1041 Predicted DNA modifica 95.6 0.14 3.1E-06 45.5 10.1 100 128-232 195-311 (347)
255 PLN02668 indole-3-acetate carb 95.6 0.31 6.7E-06 44.4 12.5 74 130-203 63-176 (386)
256 COG4627 Uncharacterized protei 95.5 0.014 3.1E-07 45.4 3.2 41 189-232 47-87 (185)
257 PF07757 AdoMet_MTase: Predict 95.5 0.014 3E-07 42.6 2.8 32 129-162 57-88 (112)
258 PF01861 DUF43: Protein of unk 95.3 0.25 5.4E-06 41.7 10.2 93 130-228 44-146 (243)
259 COG0116 Predicted N6-adenine-s 95.3 0.045 9.7E-07 49.3 6.1 79 116-196 179-306 (381)
260 PF03492 Methyltransf_7: SAM d 95.3 0.37 7.9E-06 43.2 11.9 76 128-203 14-121 (334)
261 KOG2918 Carboxymethyl transfer 95.1 0.22 4.8E-06 43.4 9.7 147 128-285 85-278 (335)
262 KOG2793 Putative N2,N2-dimethy 95.1 0.15 3.3E-06 43.3 8.6 97 130-232 86-200 (248)
263 KOG4058 Uncharacterized conser 94.9 0.067 1.4E-06 41.4 5.1 107 119-236 63-177 (199)
264 COG0742 N6-adenine-specific me 94.8 0.16 3.4E-06 41.3 7.4 100 130-235 43-157 (187)
265 KOG2730 Methylase [General fun 94.8 0.017 3.7E-07 47.7 1.8 54 130-185 94-154 (263)
266 PF04967 HTH_10: HTH DNA bindi 94.7 0.071 1.5E-06 33.8 4.2 43 28-74 5-47 (53)
267 COG0275 Predicted S-adenosylme 94.7 0.089 1.9E-06 45.7 6.2 68 116-185 11-84 (314)
268 KOG2352 Predicted spermine/spe 94.7 0.21 4.5E-06 46.3 8.9 98 132-233 50-163 (482)
269 COG1064 AdhP Zn-dependent alco 94.5 0.18 4E-06 44.9 7.9 93 128-234 164-262 (339)
270 PF04072 LCM: Leucine carboxyl 94.3 0.081 1.8E-06 43.1 4.8 85 130-214 78-182 (183)
271 PF05958 tRNA_U5-meth_tr: tRNA 94.2 0.041 8.9E-07 49.7 3.2 49 133-183 199-253 (352)
272 PF03514 GRAS: GRAS domain fam 94.1 0.5 1.1E-05 43.1 10.1 113 117-236 99-248 (374)
273 KOG3924 Putative protein methy 94.1 0.1 2.3E-06 46.8 5.3 109 120-236 184-313 (419)
274 PRK10742 putative methyltransf 93.8 0.11 2.4E-06 44.1 4.8 74 118-195 76-170 (250)
275 PF12840 HTH_20: Helix-turn-he 93.6 0.031 6.7E-07 36.6 0.9 49 29-78 4-52 (61)
276 KOG1562 Spermidine synthase [A 93.4 0.18 4E-06 43.6 5.5 101 128-232 119-237 (337)
277 PF09339 HTH_IclR: IclR helix- 93.3 0.027 5.9E-07 35.6 0.3 41 38-78 6-46 (52)
278 COG1189 Predicted rRNA methyla 93.3 0.87 1.9E-05 38.3 9.1 147 119-286 69-226 (245)
279 PF05971 Methyltransf_10: Prot 93.1 0.24 5.3E-06 43.4 5.9 74 131-205 103-193 (299)
280 PF03141 Methyltransf_29: Puta 92.9 0.13 2.9E-06 47.7 4.2 133 128-296 363-506 (506)
281 PF01022 HTH_5: Bacterial regu 92.9 0.042 9.2E-07 33.9 0.7 40 37-78 4-43 (47)
282 KOG2187 tRNA uracil-5-methyltr 92.7 0.13 2.7E-06 47.9 3.8 55 128-184 381-441 (534)
283 PF06859 Bin3: Bicoid-interact 92.6 0.12 2.6E-06 38.0 2.8 86 189-286 1-94 (110)
284 PRK01747 mnmC bifunctional tRN 92.3 0.3 6.5E-06 48.1 6.2 96 130-228 57-203 (662)
285 PF05430 Methyltransf_30: S-ad 92.3 0.36 7.7E-06 36.6 5.2 83 175-296 32-123 (124)
286 PF07109 Mg-por_mtran_C: Magne 91.8 0.73 1.6E-05 33.1 5.9 83 197-296 3-97 (97)
287 KOG1501 Arginine N-methyltrans 91.6 0.23 4.9E-06 45.4 4.0 89 130-219 66-165 (636)
288 KOG0822 Protein kinase inhibit 91.5 1.2 2.6E-05 41.8 8.5 89 131-220 368-470 (649)
289 COG0144 Sun tRNA and rRNA cyto 90.9 2.8 6.1E-05 38.0 10.3 106 128-236 154-293 (355)
290 PF10354 DUF2431: Domain of un 90.5 3.7 8E-05 32.8 9.7 122 136-286 2-154 (166)
291 PF13412 HTH_24: Winged helix- 90.5 0.15 3.3E-06 31.4 1.4 42 36-78 4-45 (48)
292 PF06962 rRNA_methylase: Putat 90.4 0.57 1.2E-05 36.2 4.6 105 156-285 1-126 (140)
293 PF11899 DUF3419: Protein of u 90.3 0.51 1.1E-05 43.0 5.1 62 172-236 273-339 (380)
294 cd08283 FDH_like_1 Glutathione 90.2 1.5 3.2E-05 40.1 8.1 100 128-232 182-307 (386)
295 PF03686 UPF0146: Uncharacteri 89.9 1.4 3E-05 33.4 6.2 86 129-231 12-102 (127)
296 PF01189 Nol1_Nop2_Fmu: NOL1/N 89.8 1.2 2.6E-05 38.9 6.9 104 128-234 83-222 (283)
297 COG1255 Uncharacterized protei 89.3 6.2 0.00013 29.3 9.0 86 129-231 12-102 (129)
298 PF09012 FeoC: FeoC like trans 89.1 0.16 3.4E-06 34.1 0.7 39 40-79 5-43 (69)
299 smart00550 Zalpha Z-DNA-bindin 88.3 0.42 9.1E-06 32.0 2.3 44 35-78 6-50 (68)
300 cd00315 Cyt_C5_DNA_methylase C 88.2 1.9 4.2E-05 37.4 7.0 123 133-281 2-140 (275)
301 KOG1099 SAM-dependent methyltr 87.9 1.3 2.9E-05 37.1 5.3 93 128-228 39-160 (294)
302 PRK10141 DNA-binding transcrip 86.5 0.58 1.3E-05 35.1 2.3 52 26-78 7-58 (117)
303 PF02636 Methyltransf_28: Puta 85.2 1.4 3E-05 37.7 4.5 37 131-167 19-64 (252)
304 COG1565 Uncharacterized conser 85.2 1.6 3.5E-05 39.1 4.8 65 97-167 50-123 (370)
305 PF13404 HTH_AsnC-type: AsnC-t 85.0 0.43 9.3E-06 28.6 0.9 36 36-72 4-39 (42)
306 PF05206 TRM13: Methyltransfer 84.8 2.1 4.6E-05 36.9 5.3 37 128-164 16-57 (259)
307 KOG2651 rRNA adenine N-6-methy 84.7 1.1 2.4E-05 40.4 3.5 42 128-170 151-193 (476)
308 smart00346 HTH_ICLR helix_turn 84.5 0.7 1.5E-05 32.5 1.9 41 38-78 8-48 (91)
309 COG3413 Predicted DNA binding 84.4 1.6 3.4E-05 36.5 4.3 47 26-76 158-204 (215)
310 PF08279 HTH_11: HTH domain; 84.1 0.41 8.9E-06 30.3 0.5 35 40-74 5-39 (55)
311 PF05711 TylF: Macrocin-O-meth 83.8 1.3 2.9E-05 37.8 3.6 97 130-231 74-212 (248)
312 PF02153 PDH: Prephenate dehyd 83.6 1.7 3.7E-05 37.4 4.4 70 144-220 1-71 (258)
313 COG1063 Tdh Threonine dehydrog 83.5 5.2 0.00011 36.1 7.6 95 131-236 169-274 (350)
314 COG2345 Predicted transcriptio 81.9 1.1 2.4E-05 37.3 2.4 38 40-78 16-53 (218)
315 COG4189 Predicted transcriptio 81.8 1.7 3.6E-05 36.4 3.3 50 26-76 14-63 (308)
316 PRK15431 ferrous iron transpor 81.5 1.6 3.4E-05 30.0 2.6 39 40-79 7-45 (78)
317 PF12324 HTH_15: Helix-turn-he 81.5 0.8 1.7E-05 31.3 1.2 33 40-73 29-61 (77)
318 KOG2539 Mitochondrial/chloropl 81.4 3.1 6.6E-05 38.6 5.1 101 130-233 200-317 (491)
319 smart00344 HTH_ASNC helix_turn 81.3 1.1 2.3E-05 32.8 1.9 42 36-78 4-45 (108)
320 PF04445 SAM_MT: Putative SAM- 80.9 1.9 4.1E-05 36.4 3.5 76 118-197 63-159 (234)
321 PF07279 DUF1442: Protein of u 80.9 16 0.00035 30.4 8.7 96 130-235 41-152 (218)
322 PRK11169 leucine-responsive tr 80.8 1.3 2.7E-05 35.4 2.3 44 35-79 14-57 (164)
323 PRK11179 DNA-binding transcrip 80.5 1.2 2.6E-05 35.0 2.0 43 36-79 10-52 (153)
324 PRK07417 arogenate dehydrogena 79.7 6.9 0.00015 34.0 6.8 79 133-220 2-83 (279)
325 PF01978 TrmB: Sugar-specific 79.7 0.49 1.1E-05 31.5 -0.3 41 37-78 10-50 (68)
326 COG5379 BtaA S-adenosylmethion 78.8 3.1 6.8E-05 36.2 4.1 66 163-231 296-366 (414)
327 PF03721 UDPG_MGDP_dh_N: UDP-g 78.4 4.5 9.8E-05 32.9 4.9 99 133-236 2-124 (185)
328 COG3355 Predicted transcriptio 78.1 1.7 3.7E-05 32.9 2.1 61 38-100 30-94 (126)
329 PRK07502 cyclohexadienyl dehyd 78.0 9.9 0.00021 33.5 7.4 84 131-220 6-92 (307)
330 PRK09424 pntA NAD(P) transhydr 76.3 9.4 0.0002 36.3 7.0 97 129-232 163-286 (509)
331 PF08220 HTH_DeoR: DeoR-like h 75.9 2 4.3E-05 27.6 1.7 38 40-78 5-42 (57)
332 KOG1269 SAM-dependent methyltr 75.9 7.7 0.00017 35.2 6.0 105 130-239 180-321 (364)
333 KOG0024 Sorbitol dehydrogenase 75.2 12 0.00027 33.2 6.8 97 128-235 167-277 (354)
334 PHA00738 putative HTH transcri 74.9 3.2 6.9E-05 30.4 2.7 42 36-78 13-54 (108)
335 PF00165 HTH_AraC: Bacterial r 74.8 2 4.3E-05 25.4 1.4 26 49-74 7-32 (42)
336 TIGR02431 pcaR_pcaU beta-ketoa 74.7 2.1 4.5E-05 36.5 2.1 41 38-78 12-52 (248)
337 TIGR00675 dcm DNA-methyltransf 74.7 7.8 0.00017 34.4 5.8 121 134-281 1-137 (315)
338 TIGR01470 cysG_Nterm siroheme 74.4 6.5 0.00014 32.6 4.8 63 131-196 9-76 (205)
339 PF01210 NAD_Gly3P_dh_N: NAD-d 74.1 5.5 0.00012 31.3 4.2 88 133-230 1-101 (157)
340 PF04703 FaeA: FaeA-like prote 74.0 1.3 2.9E-05 29.0 0.5 40 40-79 5-44 (62)
341 PF02082 Rrf2: Transcriptional 73.8 4.6 9.9E-05 28.0 3.3 30 49-78 24-53 (83)
342 PRK11569 transcriptional repre 73.1 2.3 5E-05 36.9 2.0 41 38-78 31-71 (274)
343 TIGR01321 TrpR trp operon repr 73.0 3.4 7.3E-05 29.5 2.4 34 34-69 41-74 (94)
344 cd01842 SGNH_hydrolase_like_5 72.8 5.8 0.00013 32.0 3.9 44 189-236 50-103 (183)
345 PRK05562 precorrin-2 dehydroge 72.6 29 0.00063 29.2 8.3 63 130-196 24-92 (223)
346 PRK06719 precorrin-2 dehydroge 72.6 37 0.0008 26.7 8.6 63 130-196 12-77 (157)
347 PRK10163 DNA-binding transcrip 72.6 2.5 5.4E-05 36.7 2.0 41 38-78 28-68 (271)
348 COG0541 Ffh Signal recognition 72.4 10 0.00023 35.0 6.0 104 130-236 99-226 (451)
349 KOG2352 Predicted spermine/spe 71.6 3.7 8.1E-05 38.3 3.0 104 129-237 294-421 (482)
350 PHA01634 hypothetical protein 71.4 4.8 0.0001 30.6 3.0 40 130-170 28-68 (156)
351 TIGR00122 birA_repr_reg BirA b 71.3 2.4 5.2E-05 28.2 1.3 39 38-78 3-41 (69)
352 smart00420 HTH_DEOR helix_turn 70.8 3.9 8.4E-05 25.0 2.1 37 41-78 6-42 (53)
353 PTZ00357 methyltransferase; Pr 70.7 11 0.00024 37.0 5.9 88 132-220 702-823 (1072)
354 COG1522 Lrp Transcriptional re 70.3 3.1 6.8E-05 32.4 2.0 42 36-78 9-50 (154)
355 COG1414 IclR Transcriptional r 70.2 3 6.5E-05 35.6 2.0 41 38-78 7-47 (246)
356 PF02254 TrkA_N: TrkA-N domain 69.3 6.6 0.00014 28.8 3.5 81 139-229 4-94 (116)
357 cd08230 glucose_DH Glucose deh 69.3 44 0.00094 29.9 9.5 94 129-234 171-272 (355)
358 cd08254 hydroxyacyl_CoA_DH 6-h 68.9 19 0.0004 31.7 6.9 93 128-232 163-264 (338)
359 PRK06266 transcription initiat 68.7 6.9 0.00015 31.7 3.7 40 38-78 25-64 (178)
360 COG2933 Predicted SAM-dependen 68.7 9.9 0.00021 32.7 4.6 84 128-220 209-295 (358)
361 PF02796 HTH_7: Helix-turn-hel 68.4 1.5 3.3E-05 26.6 -0.2 29 41-72 15-43 (45)
362 smart00418 HTH_ARSR helix_turn 67.3 6.2 0.00013 25.0 2.7 37 40-78 2-38 (66)
363 PRK01381 Trp operon repressor; 67.1 5.5 0.00012 28.7 2.4 34 34-69 41-74 (99)
364 PF13601 HTH_34: Winged helix 66.9 1.4 3E-05 30.5 -0.6 42 36-78 1-42 (80)
365 cd08237 ribitol-5-phosphate_DH 66.7 32 0.00069 30.7 8.0 93 129-232 162-257 (341)
366 TIGR01202 bchC 2-desacetyl-2-h 66.4 31 0.00068 30.2 7.8 86 130-232 144-232 (308)
367 TIGR02822 adh_fam_2 zinc-bindi 66.4 36 0.00079 30.2 8.2 90 128-233 163-256 (329)
368 PF12802 MarR_2: MarR family; 66.4 2.4 5.3E-05 27.2 0.5 41 38-78 8-49 (62)
369 smart00419 HTH_CRP helix_turn_ 66.2 6.3 0.00014 23.6 2.4 30 49-78 7-36 (48)
370 PRK08507 prephenate dehydrogen 65.7 20 0.00044 30.9 6.3 79 133-220 2-83 (275)
371 PF01555 N6_N4_Mtase: DNA meth 65.3 7.3 0.00016 32.1 3.4 40 129-170 190-230 (231)
372 cd00092 HTH_CRP helix_turn_hel 65.0 19 0.00041 23.2 4.7 30 49-78 24-53 (67)
373 PRK11064 wecC UDP-N-acetyl-D-m 64.9 1E+02 0.0023 28.5 11.1 96 132-236 4-123 (415)
374 PRK05472 redox-sensing transcr 64.8 21 0.00045 29.7 6.0 40 34-74 15-56 (213)
375 COG1748 LYS9 Saccharopine dehy 64.7 33 0.00072 31.4 7.6 79 132-215 2-89 (389)
376 COG3510 CmcI Cephalosporin hyd 64.7 46 0.001 27.4 7.5 103 130-238 69-187 (237)
377 COG0287 TyrA Prephenate dehydr 64.4 18 0.00039 31.6 5.7 83 132-220 4-90 (279)
378 COG0604 Qor NADPH:quinone redu 64.4 23 0.00051 31.5 6.6 95 128-234 140-244 (326)
379 PRK10857 DNA-binding transcrip 64.3 10 0.00022 30.3 3.7 44 30-77 9-52 (164)
380 KOG2920 Predicted methyltransf 64.0 7.1 0.00015 33.9 3.0 37 129-166 115-152 (282)
381 PRK09834 DNA-binding transcrip 63.8 4.9 0.00011 34.6 2.1 41 38-78 14-54 (263)
382 PF03486 HI0933_like: HI0933-l 63.7 5 0.00011 37.1 2.2 82 133-214 2-89 (409)
383 PRK05786 fabG 3-ketoacyl-(acyl 63.6 83 0.0018 25.9 12.3 54 131-185 5-64 (238)
384 PF06163 DUF977: Bacterial pro 63.3 6.6 0.00014 29.6 2.3 46 33-79 10-55 (127)
385 PRK15090 DNA-binding transcrip 62.7 5.2 0.00011 34.3 2.0 39 39-78 18-56 (257)
386 COG4190 Predicted transcriptio 62.7 7.6 0.00017 29.5 2.6 48 30-78 59-106 (144)
387 smart00347 HTH_MARR helix_turn 62.0 7 0.00015 27.5 2.3 41 37-78 12-52 (101)
388 PF01047 MarR: MarR family; I 61.9 2.2 4.8E-05 27.2 -0.3 38 40-78 8-45 (59)
389 PRK06474 hypothetical protein; 61.8 6.9 0.00015 31.6 2.5 50 29-78 5-55 (178)
390 PF14740 DUF4471: Domain of un 61.1 14 0.0003 32.4 4.3 80 173-281 199-286 (289)
391 PRK05225 ketol-acid reductoiso 60.7 10 0.00022 35.4 3.5 91 130-232 35-132 (487)
392 PRK09880 L-idonate 5-dehydroge 60.1 31 0.00068 30.7 6.7 91 130-232 169-267 (343)
393 cd05188 MDR Medium chain reduc 59.6 35 0.00076 28.6 6.7 93 129-233 133-234 (271)
394 PF13460 NAD_binding_10: NADH( 59.1 86 0.0019 24.6 11.7 133 137-285 3-144 (183)
395 KOG1253 tRNA methyltransferase 59.1 4 8.6E-05 38.2 0.7 95 129-232 108-217 (525)
396 PRK11730 fadB multifunctional 58.8 24 0.00052 35.3 6.1 150 130-288 312-497 (715)
397 TIGR02702 SufR_cyano iron-sulf 58.5 6.7 0.00014 32.4 1.9 40 38-78 4-43 (203)
398 PF00325 Crp: Bacterial regula 58.2 7.9 0.00017 21.7 1.5 28 50-77 2-29 (32)
399 PF12692 Methyltransf_17: S-ad 57.7 15 0.00032 28.7 3.4 54 131-185 29-82 (160)
400 TIGR02337 HpaR homoprotocatech 57.7 19 0.00041 26.6 4.1 42 36-78 29-70 (118)
401 PRK13239 alkylmercury lyase; P 57.6 6.7 0.00014 32.5 1.7 37 37-74 24-60 (206)
402 PF02005 TRM: N2,N2-dimethylgu 57.2 22 0.00048 32.5 5.1 97 129-234 48-157 (377)
403 PF05050 Methyltransf_21: Meth 57.2 13 0.00027 28.9 3.3 32 136-167 1-37 (167)
404 PTZ00117 malate dehydrogenase; 56.6 90 0.002 27.7 8.9 65 131-197 5-81 (319)
405 PRK03659 glutathione-regulated 56.1 42 0.0009 32.8 7.2 86 132-229 401-496 (601)
406 COG1349 GlpR Transcriptional r 56.0 31 0.00067 29.6 5.6 39 39-78 9-47 (253)
407 TIGR02764 spore_ybaN_pdaB poly 55.7 17 0.00037 29.4 3.8 56 201-282 132-187 (191)
408 PF08280 HTH_Mga: M protein tr 55.3 3.8 8.3E-05 26.4 -0.0 34 37-71 7-40 (59)
409 KOG1098 Putative SAM-dependent 55.2 15 0.00032 35.5 3.7 44 119-163 34-78 (780)
410 TIGR02010 IscR iron-sulfur clu 55.1 18 0.0004 27.6 3.7 45 30-78 9-53 (135)
411 PRK12490 6-phosphogluconate de 54.5 52 0.0011 28.9 7.0 83 134-230 3-92 (299)
412 smart00859 Semialdhyde_dh Semi 53.8 71 0.0015 23.5 6.7 82 134-220 2-91 (122)
413 PRK06545 prephenate dehydrogen 53.4 56 0.0012 29.6 7.2 82 133-220 2-87 (359)
414 COG4367 Uncharacterized protei 53.1 15 0.00033 25.7 2.6 21 49-69 22-42 (97)
415 PLN02353 probable UDP-glucose 52.8 84 0.0018 29.7 8.4 101 132-237 2-132 (473)
416 TIGR00561 pntA NAD(P) transhyd 52.6 33 0.00071 32.7 5.6 91 130-228 163-281 (511)
417 PF13463 HTH_27: Winged helix 52.4 8 0.00017 25.2 1.2 38 41-78 9-46 (68)
418 TIGR02437 FadB fatty oxidation 52.2 32 0.0007 34.4 5.8 150 130-288 312-497 (714)
419 PF06792 UPF0261: Uncharacteri 52.1 1.2E+02 0.0026 28.0 8.9 128 129-286 92-221 (403)
420 PRK09489 rsmC 16S ribosomal RN 51.9 1.2E+02 0.0025 27.4 8.8 94 130-234 19-115 (342)
421 PF00107 ADH_zinc_N: Zinc-bind 51.9 10 0.00022 28.2 1.8 83 140-234 1-92 (130)
422 TIGR00373 conserved hypothetic 51.6 13 0.00028 29.4 2.4 40 38-78 17-56 (158)
423 COG3129 Predicted SAM-dependen 51.2 14 0.0003 31.2 2.6 71 130-203 78-167 (292)
424 cd00090 HTH_ARSR Arsenical Res 51.0 13 0.00029 24.2 2.1 39 38-78 10-48 (78)
425 PRK15001 SAM-dependent 23S rib 50.7 73 0.0016 29.2 7.4 87 133-233 47-144 (378)
426 PRK06718 precorrin-2 dehydroge 50.4 1E+02 0.0022 25.3 7.7 63 130-196 9-77 (202)
427 CHL00194 ycf39 Ycf39; Provisio 49.8 1.8E+02 0.0039 25.5 10.7 61 133-196 2-71 (317)
428 PRK00066 ldh L-lactate dehydro 49.7 1E+02 0.0022 27.4 8.0 102 129-231 4-122 (315)
429 PRK11154 fadJ multifunctional 49.7 45 0.00097 33.3 6.3 150 130-288 308-494 (708)
430 PRK10669 putative cation:proto 49.4 64 0.0014 31.1 7.3 86 132-229 418-513 (558)
431 cd08255 2-desacetyl-2-hydroxye 49.2 1.1E+02 0.0024 25.9 8.2 92 128-232 95-191 (277)
432 KOG1596 Fibrillarin and relate 49.1 1.4E+02 0.0031 25.6 8.1 99 128-235 154-265 (317)
433 PF03446 NAD_binding_2: NAD bi 48.9 25 0.00054 27.7 3.7 83 133-229 3-91 (163)
434 TIGR02944 suf_reg_Xantho FeS a 48.8 17 0.00036 27.5 2.6 30 49-78 24-53 (130)
435 TIGR00872 gnd_rel 6-phosphoglu 48.7 43 0.00092 29.4 5.5 84 133-230 2-91 (298)
436 PF03269 DUF268: Caenorhabditi 48.5 20 0.00043 28.6 2.9 45 189-236 63-116 (177)
437 KOG2666 UDP-glucose/GDP-mannos 47.9 17 0.00037 32.2 2.7 30 133-162 3-34 (481)
438 PF01325 Fe_dep_repress: Iron 47.7 14 0.0003 24.0 1.7 31 48-78 20-50 (60)
439 PHA02701 ORF020 dsRNA-binding 47.3 17 0.00036 29.4 2.4 43 36-78 5-47 (183)
440 COG0686 Ald Alanine dehydrogen 46.9 55 0.0012 29.1 5.6 90 131-227 168-264 (371)
441 PRK03562 glutathione-regulated 46.6 69 0.0015 31.5 7.0 87 132-229 401-496 (621)
442 PF08461 HTH_12: Ribonuclease 46.5 19 0.00041 23.8 2.2 39 40-78 3-46 (66)
443 cd05291 HicDH_like L-2-hydroxy 46.3 1.3E+02 0.0027 26.5 8.1 98 133-231 2-117 (306)
444 smart00342 HTH_ARAC helix_turn 46.0 49 0.0011 21.9 4.5 34 40-75 42-76 (84)
445 PRK10637 cysG siroheme synthas 45.9 88 0.0019 29.4 7.4 63 130-196 11-79 (457)
446 PRK11524 putative methyltransf 45.8 32 0.00069 30.0 4.2 41 129-171 207-248 (284)
447 PRK08293 3-hydroxybutyryl-CoA 45.7 91 0.002 27.1 7.1 90 132-230 4-118 (287)
448 cd08245 CAD Cinnamyl alcohol d 45.4 1E+02 0.0022 27.0 7.5 93 128-232 160-257 (330)
449 cd07153 Fur_like Ferric uptake 45.1 18 0.0004 26.5 2.3 42 37-78 3-49 (116)
450 TIGR02441 fa_ox_alpha_mit fatt 45.0 43 0.00092 33.7 5.4 150 130-288 334-519 (737)
451 PRK13699 putative methylase; P 44.8 72 0.0016 26.8 6.0 20 208-230 52-71 (227)
452 PF14314 Methyltrans_Mon: Viru 44.6 50 0.0011 32.6 5.6 46 111-159 306-351 (675)
453 KOG2782 Putative SAM dependent 44.5 20 0.00043 30.0 2.5 50 116-167 31-81 (303)
454 TIGR03451 mycoS_dep_FDH mycoth 44.5 1E+02 0.0023 27.5 7.5 94 128-233 174-278 (358)
455 PRK11512 DNA-binding transcrip 44.2 17 0.00037 28.0 2.0 41 37-78 42-82 (144)
456 PRK11074 putative DNA-binding 44.2 52 0.0011 28.5 5.4 35 37-74 6-40 (300)
457 PRK08655 prephenate dehydrogen 44.0 67 0.0015 30.0 6.3 79 133-220 2-84 (437)
458 PRK13699 putative methylase; P 43.9 37 0.0008 28.6 4.1 41 129-171 162-203 (227)
459 PF04545 Sigma70_r4: Sigma-70, 43.7 22 0.00049 21.6 2.2 26 49-74 19-44 (50)
460 PF00145 DNA_methylase: C-5 cy 43.5 84 0.0018 27.4 6.7 120 133-281 2-139 (335)
461 PRK10219 DNA-binding transcrip 43.3 22 0.00047 25.7 2.4 26 49-74 20-45 (107)
462 PRK11014 transcriptional repre 43.1 39 0.00085 25.9 3.9 45 30-78 9-53 (141)
463 KOG1227 Putative methyltransfe 42.8 7.4 0.00016 34.1 -0.2 99 131-237 195-303 (351)
464 PRK10458 DNA cytosine methylas 42.5 1.9E+02 0.0042 27.3 9.0 35 131-167 88-124 (467)
465 PF00196 GerE: Bacterial regul 42.4 12 0.00026 23.8 0.7 39 35-76 6-44 (58)
466 COG1959 Predicted transcriptio 42.4 24 0.00052 27.6 2.6 29 49-77 24-52 (150)
467 PRK11908 NAD-dependent epimera 42.4 2.3E+02 0.0051 25.0 9.4 60 133-194 3-73 (347)
468 cd01338 MDH_choloroplast_like 42.2 1.8E+02 0.0039 25.9 8.5 99 131-231 2-128 (322)
469 TIGR02825 B4_12hDH leukotriene 42.0 93 0.002 27.2 6.7 92 128-232 136-238 (325)
470 PTZ00082 L-lactate dehydrogena 42.0 1.8E+02 0.0039 25.9 8.4 63 132-196 7-81 (321)
471 PRK11511 DNA-binding transcrip 42.0 22 0.00049 26.8 2.3 27 49-75 24-50 (127)
472 TIGR03366 HpnZ_proposed putati 42.0 2.2E+02 0.0048 24.3 10.5 93 130-234 120-221 (280)
473 PF13518 HTH_28: Helix-turn-he 41.9 22 0.00047 21.6 1.9 28 51-78 13-40 (52)
474 PF08845 SymE_toxin: Toxin Sym 41.8 20 0.00044 23.0 1.7 15 270-284 31-45 (57)
475 COG0503 Apt Adenine/guanine ph 41.5 59 0.0013 26.2 4.8 44 214-285 109-152 (179)
476 PRK11920 rirA iron-responsive 41.5 35 0.00076 26.8 3.4 45 29-78 8-52 (153)
477 PF07991 IlvN: Acetohydroxy ac 41.4 24 0.00053 28.0 2.5 89 131-231 4-95 (165)
478 TIGR00738 rrf2_super rrf2 fami 41.3 26 0.00055 26.4 2.6 45 30-78 9-53 (132)
479 PF03807 F420_oxidored: NADP o 41.2 30 0.00065 24.2 2.8 80 140-230 6-92 (96)
480 cd05290 LDH_3 A subgroup of L- 41.2 1.3E+02 0.0029 26.6 7.4 97 134-231 2-119 (307)
481 TIGR01884 cas_HTH CRISPR locus 41.1 19 0.00041 29.6 2.0 41 37-78 145-185 (203)
482 PRK07530 3-hydroxybutyryl-CoA 41.0 1.4E+02 0.0031 25.9 7.6 89 132-231 5-118 (292)
483 TIGR03026 NDP-sugDHase nucleot 40.6 1.7E+02 0.0037 26.9 8.4 98 133-235 2-123 (411)
484 PF07789 DUF1627: Protein of u 40.6 34 0.00074 26.6 3.0 30 49-78 5-34 (155)
485 COG1448 TyrB Aspartate/tyrosin 40.6 2.5E+02 0.0053 25.8 8.8 24 139-162 102-128 (396)
486 PRK05479 ketol-acid reductoiso 40.5 57 0.0012 29.2 5.0 86 130-227 16-104 (330)
487 PRK13558 bacterio-opsin activa 40.5 32 0.0007 33.8 3.8 45 26-74 610-654 (665)
488 PF11253 DUF3052: Protein of u 40.3 1.6E+02 0.0035 22.3 8.1 69 190-287 46-114 (127)
489 TIGR03201 dearomat_had 6-hydro 40.1 2.1E+02 0.0044 25.5 8.7 94 128-233 164-274 (349)
490 PRK07680 late competence prote 40.0 1E+02 0.0022 26.6 6.4 82 133-220 2-88 (273)
491 COG0373 HemA Glutamyl-tRNA red 39.7 1.3E+02 0.0028 28.0 7.1 100 130-240 177-281 (414)
492 PF07381 DUF1495: Winged helix 39.6 18 0.00039 25.7 1.3 36 34-69 8-44 (90)
493 PLN02896 cinnamyl-alcohol dehy 39.6 2.7E+02 0.0059 24.7 9.5 68 129-197 8-87 (353)
494 COG1867 TRM1 N2,N2-dimethylgua 39.5 90 0.0019 28.4 6.0 119 105-235 30-158 (380)
495 PF10668 Phage_terminase: Phag 39.4 18 0.0004 23.5 1.2 22 48-69 20-41 (60)
496 TIGR00518 alaDH alanine dehydr 38.9 46 0.001 30.3 4.3 39 130-169 166-206 (370)
497 PF13384 HTH_23: Homeodomain-l 38.9 11 0.00024 22.9 0.2 37 37-76 7-43 (50)
498 KOG1209 1-Acyl dihydroxyaceton 38.8 2.4E+02 0.0052 23.8 10.3 77 129-230 5-85 (289)
499 TIGR01771 L-LDH-NAD L-lactate 38.7 97 0.0021 27.3 6.2 94 137-231 2-113 (299)
500 PLN02688 pyrroline-5-carboxyla 38.7 1.3E+02 0.0028 25.6 6.9 85 133-229 2-92 (266)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=1.7e-37 Score=265.31 Aligned_cols=197 Identities=38% Similarity=0.746 Sum_probs=173.3
Q ss_pred hHHHhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhch-HHHHHhcccccCCCCEEEEecCCchHHHHHH
Q 022515 70 QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLAT-SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAI 148 (296)
Q Consensus 70 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l 148 (296)
.|.+++++|+ ++|...+|.++|+++.++++..+.|..+|...+.... ..+...++ +++..+|||||||+|.++.++
T Consensus 42 ~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l 118 (241)
T PF00891_consen 42 RLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIAL 118 (241)
T ss_dssp GHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHH
T ss_pred HHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHH
Confidence 6778888887 8999999999999999999999999999999888777 77788888 788899999999999999999
Q ss_pred HHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCC--cE
Q 022515 149 AKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKK--GK 226 (296)
Q Consensus 149 ~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~g--G~ 226 (296)
+++||+++++++|+|++++.+++ .+||++++|||++++|.+|+|++++|||+|+|+++.+||++++++|+| | |+
T Consensus 119 ~~~~P~l~~~v~Dlp~v~~~~~~-~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~ 194 (241)
T PF00891_consen 119 ARAYPNLRATVFDLPEVIEQAKE-ADRVEFVPGDFFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGR 194 (241)
T ss_dssp HHHSTTSEEEEEE-HHHHCCHHH-TTTEEEEES-TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEE
T ss_pred HHHCCCCcceeeccHhhhhcccc-ccccccccccHHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCe
Confidence 99999999999999999999984 999999999999988889999999999999999999999999999999 8 99
Q ss_pred EEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHH
Q 022515 227 VIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFT 273 (296)
Q Consensus 227 lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~ 273 (296)
|+|+|.+.++....+........+|++|++.++|++||.+||++||+
T Consensus 195 llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 195 LLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred EEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 99999999988776422212258999999999999999999999985
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=261.26 Aligned_cols=275 Identities=33% Similarity=0.522 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCC-----CCcchhhhHH----------------
Q 022515 14 EAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTI-----NPSKSRCQLR---------------- 72 (296)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~-----~~~~l~~~l~---------------- 72 (296)
....+++++++++..++++.+|+|||+||.|+++ ++ ..|+|..+.. +|..+.|.|+
T Consensus 5 ~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~ 81 (342)
T KOG3178|consen 5 EASLRAMRLANGFALPMVLKAACELGVFDILANA-GS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGGE 81 (342)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecce
Confidence 4456889999999999999999999999999974 22 6677766663 3444555111
Q ss_pred ----------------------------------------HhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHcc
Q 022515 73 ----------------------------------------TWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASD 112 (296)
Q Consensus 73 ----------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 112 (296)
+.++.+. .+|..++|..++++...+......|+++|...
T Consensus 82 ~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l 160 (342)
T KOG3178|consen 82 VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFL 160 (342)
T ss_pred eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHH
Confidence 1111111 34556667677888888888888999999988
Q ss_pred chhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCCCccce
Q 022515 113 AWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADA 192 (296)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~ 192 (296)
+......+++.+.. |++....||||||.|..+..++..||+++++.+|+|.+++.+......|+.+.||++++.|..|+
T Consensus 161 ~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~da 239 (342)
T KOG3178|consen 161 STLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDA 239 (342)
T ss_pred HHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCe
Confidence 88887778887763 77889999999999999999999999999999999999999985227799999999999999999
Q ss_pred eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC-CCCCchhhhhhhhhhhhhhhc-CccccCHHHHHH
Q 022515 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK-KGDDKSIETQLFFDMLMMVLL-TGTERDEKEWTK 270 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~g~~rt~~e~~~ 270 (296)
|++.||||||+|++|+++|+||+++|+| ||+|++.|.+.++. ......+......|+.|+... +|++|+.+|+..
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~ 316 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQA 316 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHh
Confidence 9999999999999999999999999999 99999999988852 222111233457788888875 699999999999
Q ss_pred HHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 271 LFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 271 ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
++.++||.+..+.-.+..+++|+++|
T Consensus 317 l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 317 LLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred cchhhcCceeEEEeccCccchheeCC
Confidence 99999999999998888999999876
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=1.5e-33 Score=249.03 Aligned_cols=245 Identities=24% Similarity=0.409 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh---------------------cCCCCh---
Q 022515 27 INSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ---------------------NDDPTP--- 82 (296)
Q Consensus 27 ~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~---------------------~~~~~~--- 82 (296)
+...+|++|++|||||+|++ +|.|++|||+++|++++.+++.|+.... .+.+..
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l~~~~~~~~~ 79 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNL 79 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEecCCcEecchhHHhhccCCccchhh
Confidence 35789999999999999987 8999999999999999999885543321 010000
Q ss_pred ----hhhh----------------cCCCchhhcccCch---HHHHHHHHHH-ccchhchHHHHHhcccccCCCCEEEEec
Q 022515 83 ----FDTA----------------HGKTLWEYAGDEPK---LNNFFNEAMA-SDAWLATSVMIHKCKDVFEGLNSLVDVG 138 (296)
Q Consensus 83 ----~~~~----------------~g~~~~~~~~~~~~---~~~~f~~~m~-~~~~~~~~~~~~~~~~~~~~~~~vLDvG 138 (296)
+... .+.+.|......++ ....|.+.|. .......+.+++.++ +++..+|||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vlDiG 157 (306)
T TIGR02716 80 HQTPVAKAMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVG 157 (306)
T ss_pred hcCchHHHHHHHHHHHHHhHHHHhcCCcccccccCCCCCCHHHHHhHHHHHHhcchhHHHHHHHHcC--CCCCCEEEEeC
Confidence 0000 01111111111111 1123444443 333344556667666 77889999999
Q ss_pred CCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCCccceeEehhhhccCCchHHHHHH
Q 022515 139 GGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AISPADAVLLKWILHDWNDEECVKIL 211 (296)
Q Consensus 139 gG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL 211 (296)
||+|.+++.+++++|+++++++|+|++++.+++ ..+||+++.+|+++ ++|++|+|++++++|+|+++.+.++|
T Consensus 158 ~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il 237 (306)
T TIGR02716 158 GGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMC 237 (306)
T ss_pred CchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHH
Confidence 999999999999999999999999999887754 46899999999997 67779999999999999999889999
Q ss_pred HHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh----hhhhhcCccccCHHHHHHHHHhcCCceeEEE
Q 022515 212 KKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM----LMMVLLTGTERDEKEWTKLFTYAGFSDYKII 283 (296)
Q Consensus 212 ~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 283 (296)
++++++|+| ||+++|.|.+.++.... .+ ..+.+. .+.... ...++.++|.++|+++||+.+++.
T Consensus 238 ~~~~~~L~p---gG~l~i~d~~~~~~~~~-~~---~~~~~~~~~~~~~~~~-~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 238 KKAFDAMRS---GGRLLILDMVIDDPENP-NF---DYLSHYILGAGMPFSV-LGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHhcCC---CCEEEEEEeccCCCCCc-hh---hHHHHHHHHccccccc-ccCCCHHHHHHHHHHcCCCeeEec
Confidence 999999999 99999999887765432 11 112221 111111 123357999999999999988754
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.81 E-value=8.9e-20 Score=155.71 Aligned_cols=149 Identities=16% Similarity=0.216 Sum_probs=116.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCCccceeEehhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AISPADAVLLKWI 198 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~D~v~~~~v 198 (296)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.|++ ...+++++.+|+.+ +.+.+|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 466799999999999999999974 7899999999 999998875 24589999999998 6677999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh------------------cCc
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL------------------LTG 260 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~g 260 (296)
+|++++++...+|++++++|+| ||.+++.|.+..+..... .....+++... ..-
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKIN-----HLLIDLHHQFKRANGYSELEISQKRTALENVM 203 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 9999988888999999999999 999999998765543211 11111111100 011
Q ss_pred cccCHHHHHHHHHhcCCceeEEEEc
Q 022515 261 TERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 261 ~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
...|.+++.+++++|||+.+++...
T Consensus 204 ~~~s~~~~~~~l~~aGF~~~~~~~~ 228 (239)
T TIGR00740 204 RTDSIETHKARLKNVGFSHVELWFQ 228 (239)
T ss_pred CCCCHHHHHHHHHHcCCchHHHHHH
Confidence 3459999999999999997765443
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.80 E-value=1.5e-18 Score=145.32 Aligned_cols=160 Identities=18% Similarity=0.309 Sum_probs=121.7
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCCc
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AISP 189 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p~ 189 (296)
-+.++.... ..++.+|||||||||.++..+++..+..+++++|. +.|++.|++ ....|+|+.+|..+ |+|+
T Consensus 40 r~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D 117 (238)
T COG2226 40 RRALISLLG--IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD 117 (238)
T ss_pred HHHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCC
Confidence 344444443 34689999999999999999999999999999999 999999987 11229999999999 8884
Q ss_pred --cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhh-hhhhcC------c
Q 022515 190 --ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML-MMVLLT------G 260 (296)
Q Consensus 190 --~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------g 260 (296)
||+|.+++.||+++|.+ +.|++++|+||| ||++++.|...+...... .....+... .+-..+ .
T Consensus 118 ~sFD~vt~~fglrnv~d~~--~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~ 189 (238)
T COG2226 118 NSFDAVTISFGLRNVTDID--KALKEMYRVLKP---GGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDA 189 (238)
T ss_pred CccCEEEeeehhhcCCCHH--HHHHHHHHhhcC---CeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecCh
Confidence 99999999999999876 789999999999 999999998877553321 111111111 110111 1
Q ss_pred -----------cccCHHHHHHHHHhcCCceeEEEEcC
Q 022515 261 -----------TERDEKEWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 261 -----------~~rt~~e~~~ll~~aGf~~~~~~~~~ 286 (296)
+..+.+++.++++++||+.+......
T Consensus 190 ~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~ 226 (238)
T COG2226 190 EAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLT 226 (238)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeee
Confidence 12278999999999999988866553
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.80 E-value=1.5e-19 Score=152.70 Aligned_cols=158 Identities=20% Similarity=0.392 Sum_probs=82.5
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~~D~v~~~~ 197 (296)
..++.+|||||||||.++..+++.. |+.+++++|+ +.|++.|++ ...+|+++.+|..+ |++ .||+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999999875 6789999999 999999986 34599999999999 776 399999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh-------cCc----------
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL-------LTG---------- 260 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g---------- 260 (296)
.+|+++|.. +.|++++|+||| ||+++|+|...+.... ....+.+++... ..+
T Consensus 125 glrn~~d~~--~~l~E~~RVLkP---GG~l~ile~~~p~~~~------~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~ 193 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLKP---GGRLVILEFSKPRNPL------LRALYKFYFKYILPLIGRLLSGDREAYRYLPE 193 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEEE---EEEEEEEEEEB-SSHH------HHHHHHH-------------------------
T ss_pred hHHhhCCHH--HHHHHHHHHcCC---CeEEEEeeccCCCCch------hhceeeeeeccccccccccccccccccccccc
Confidence 999999865 689999999999 9999999988765321 111222221100 011
Q ss_pred ---cccCHHHHHHHHHhcCCceeEEEEcC-CcceEEEEeC
Q 022515 261 ---TERDEKEWTKLFTYAGFSDYKIIPIL-GLRSLIEVYP 296 (296)
Q Consensus 261 ---~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 296 (296)
...+.+++.++++++||+.++..+.. |...+..++|
T Consensus 194 Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 194 SIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccCC
Confidence 11278999999999999999887763 5555655543
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.79 E-value=3.7e-18 Score=147.39 Aligned_cols=156 Identities=16% Similarity=0.249 Sum_probs=120.7
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--cc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~ 190 (296)
..++..+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +++ .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 45566665 6788999999999999999998876 679999999 889888875 35689999999987 665 49
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK 270 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 270 (296)
|+|++..++||++.++...+|++++++|+| ||++++.+......... .. .... +.........+.+++.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~---~~--~~~~--~~~~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENW---DE--EFKA--YIKKRKYTLIPIQEYGD 188 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCc---HH--HHHH--HHHhcCCCCCCHHHHHH
Confidence 999999999888876677999999999999 99999999866543211 01 1111 00011223458899999
Q ss_pred HHHhcCCceeEEEEcC
Q 022515 271 LFTYAGFSDYKIIPIL 286 (296)
Q Consensus 271 ll~~aGf~~~~~~~~~ 286 (296)
+|+++||++++...+.
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999987754
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.79 E-value=3.8e-18 Score=147.16 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=119.1
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC--------CCCCeeEEeccCCC-CCC--ccceeE
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS--------DLANLKYVGGDMFE-AIS--PADAVL 194 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~D~~~-~~p--~~D~v~ 194 (296)
..++.+|||||||+|.++..+++.+ |..+++++|+ ++|++.|++ ..++++++.+|+.+ +++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999998875 6689999999 999998864 13589999999988 665 399999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhh-hhh---hhhhcC-----------
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFF-DML---MMVLLT----------- 259 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~----------- 259 (296)
+..++|++++.. ++|++++++||| ||++++.|...++..... ....++ ... .....+
T Consensus 151 ~~~~l~~~~d~~--~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s 222 (261)
T PLN02233 151 MGYGLRNVVDRL--KAMQEMYRVLKP---GSRVSILDFNKSTQPFTT---SMQEWMIDNVVVPVATGYGLAKEYEYLKSS 222 (261)
T ss_pred EecccccCCCHH--HHHHHHHHHcCc---CcEEEEEECCCCCcHHHH---HHHHHHHhhhhhHHHHHhCChHHHHHHHHH
Confidence 999999998764 789999999999 999999998755432110 110110 000 000001
Q ss_pred -ccccCHHHHHHHHHhcCCceeEEEEcC-CcceEEEEe
Q 022515 260 -GTERDEKEWTKLFTYAGFSDYKIIPIL-GLRSLIEVY 295 (296)
Q Consensus 260 -g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~ 295 (296)
....+.+++.++++++||+.++..... +...+..++
T Consensus 223 ~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 223 INEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 123599999999999999999887765 445566554
No 9
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.78 E-value=2.1e-18 Score=147.77 Aligned_cols=146 Identities=16% Similarity=0.255 Sum_probs=113.7
Q ss_pred CCCCEEEEecCCchHHHHHHHH--HCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCCccceeEehhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAK--AFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AISPADAVLLKWI 198 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~D~v~~~~v 198 (296)
.+..+|||||||+|..+..+++ .+|+.+++++|+ +.|++.|++ ...+++++.+|+.+ +.+++|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4668999999999999999988 468999999999 999999876 24589999999988 6667999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh-hcC-----------------c
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV-LLT-----------------G 260 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------g 260 (296)
+|++++++...++++++++|+| ||.+++.|.+..+.....+ ..+.++... ..+ -
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~-----~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~ 206 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGE-----LLFNMHHDFKRANGYSELEISQKRSMLENVM 206 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 9999987778999999999999 9999999977655432211 111111100 001 1
Q ss_pred cccCHHHHHHHHHhcCCceeEE
Q 022515 261 TERDEKEWTKLFTYAGFSDYKI 282 (296)
Q Consensus 261 ~~rt~~e~~~ll~~aGf~~~~~ 282 (296)
...|+++..++|++|||+.+.+
T Consensus 207 ~~~~~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 207 LTDSVETHKARLHKAGFEHSEL 228 (247)
T ss_pred ccCCHHHHHHHHHHcCchhHHH
Confidence 1238899999999999987654
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.77 E-value=1.1e-17 Score=142.07 Aligned_cols=169 Identities=18% Similarity=0.266 Sum_probs=124.0
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS- 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p- 188 (296)
..++..+. ..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ..++++++.+|..+ +.+
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 34555555 5677899999999999999999886 6789999999 899887765 34689999999987 554
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhh-hhhhh-------------
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQL-FFDML------------- 253 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~-~~~~~------------- 253 (296)
.||+|++..++|++++.. ++|+++.++|+| ||++++.+...+... .+..... .+...
T Consensus 113 ~~fD~V~~~~~l~~~~~~~--~~l~~~~~~Lk~---gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~ 184 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDYM--QVLREMYRVVKP---GGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYK 184 (231)
T ss_pred CCccEEEEecccccCCCHH--HHHHHHHHHcCc---CeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHH
Confidence 499999999999888764 789999999999 999998886543321 0100000 00000
Q ss_pred ---hhhhcCccccCHHHHHHHHHhcCCceeEEEEcC-CcceEEEEeC
Q 022515 254 ---MMVLLTGTERDEKEWTKLFTYAGFSDYKIIPIL-GLRSLIEVYP 296 (296)
Q Consensus 254 ---~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 296 (296)
.+........+.+++.++|+++||+++++.... +..+++.++|
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 185 EYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 000001123478999999999999999998886 6777888775
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.76 E-value=3.9e-17 Score=146.11 Aligned_cols=152 Identities=16% Similarity=0.228 Sum_probs=112.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWI 198 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~v 198 (296)
.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ ..++++|+.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999988 789999999 888887764 34689999999988 655 4999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCC-chh-hhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDD-KSI-ETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG 276 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG 276 (296)
+||+++.. +++++++++|+| ||+++|.+.......... ... .....++............+.++|.++++++|
T Consensus 196 ~~h~~d~~--~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDKR--KFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCHH--HHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 99998864 789999999999 999999987543321110 000 00011111110001112348999999999999
Q ss_pred CceeEEEEcC
Q 022515 277 FSDYKIIPIL 286 (296)
Q Consensus 277 f~~~~~~~~~ 286 (296)
|+++++..+.
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999887764
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.73 E-value=9.1e-17 Score=138.47 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=110.1
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-C-CCccceeE
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A-ISPADAVL 194 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~-~p~~D~v~ 194 (296)
..+++.+. ..++.+|||||||+|.++..+++++|+.+++++|+ +.+++.|++ .+++++.+|+.+ + .+.||+|+
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--cCCcEEEcChhhCCCCCCceEEE
Confidence 45666666 56778999999999999999999999999999999 999999873 468899999876 2 23599999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhh------hhhhhh-hh-hhcCccccCHH
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQ------LFFDML-MM-VLLTGTERDEK 266 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~------~~~~~~-~~-~~~~g~~rt~~ 266 (296)
++.++|++++.. +++++++++|+| ||++++..... .... ...... .+.... .. ...+....+.+
T Consensus 95 ~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~--~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 166 (255)
T PRK14103 95 SNAALQWVPEHA--DLLVRWVDELAP---GSWIAVQVPGN--FDAP-SHAAVRALARREPWAKLLRDIPFRVGAVVQTPA 166 (255)
T ss_pred EehhhhhCCCHH--HHHHHHHHhCCC---CcEEEEEcCCC--cCCh-hHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence 999999998754 789999999999 99988864221 1110 000000 011100 00 00122345899
Q ss_pred HHHHHHHhcCCceeE
Q 022515 267 EWTKLFTYAGFSDYK 281 (296)
Q Consensus 267 e~~~ll~~aGf~~~~ 281 (296)
++.++|+++||++..
T Consensus 167 ~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 167 GYAELLTDAGCKVDA 181 (255)
T ss_pred HHHHHHHhCCCeEEE
Confidence 999999999998544
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.72 E-value=8e-17 Score=142.40 Aligned_cols=141 Identities=27% Similarity=0.368 Sum_probs=112.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC--ccceeEehhhhccC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS--PADAVLLKWILHDW 202 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~ 202 (296)
.+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++ ...+++++.+|+.+ +++ .||+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999999999999988889999999 899988875 34679999999987 554 49999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEE
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKI 282 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 282 (296)
++.+ .+|++++++|+| ||++++.+...+.... .....+.++ ...+.+|+.++++++||+.+++
T Consensus 192 ~d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~~------~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFWL------SRFFADVWM------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCHH--HHHHHHHHhcCC---CcEEEEEEecCcchhH------HHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence 9875 689999999999 9999988765432100 001112111 1247899999999999999998
Q ss_pred EEcC
Q 022515 283 IPIL 286 (296)
Q Consensus 283 ~~~~ 286 (296)
..+.
T Consensus 255 ~~i~ 258 (340)
T PLN02490 255 KRIG 258 (340)
T ss_pred EEcC
Confidence 8764
No 14
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.71 E-value=2.1e-16 Score=148.09 Aligned_cols=151 Identities=17% Similarity=0.226 Sum_probs=118.0
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--cc
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PA 190 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~ 190 (296)
.+++.+. .+++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.|++ ...+++|..+|+.+ ++| .|
T Consensus 257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 4555555 5667899999999999999998876 779999999 899888765 45689999999988 555 49
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK 270 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 270 (296)
|+|++..+++|+++.. .+|++++++|+| ||++++.+.......... ..... ....+...++.+++.+
T Consensus 334 D~I~s~~~l~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~-----~~~~g~~~~~~~~~~~ 400 (475)
T PLN02336 334 DVIYSRDTILHIQDKP--ALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFAEY-----IKQRGYDLHDVQAYGQ 400 (475)
T ss_pred EEEEECCcccccCCHH--HHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHHHH-----HHhcCCCCCCHHHHHH
Confidence 9999999999998865 789999999999 999999987765432211 11111 1122445679999999
Q ss_pred HHHhcCCceeEEEEc
Q 022515 271 LFTYAGFSDYKIIPI 285 (296)
Q Consensus 271 ll~~aGf~~~~~~~~ 285 (296)
+++++||+++.+...
T Consensus 401 ~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 401 MLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHCCCeeeeeecc
Confidence 999999999877654
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.71 E-value=3.8e-16 Score=133.05 Aligned_cols=168 Identities=20% Similarity=0.255 Sum_probs=123.5
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS- 188 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p- 188 (296)
.++..+. ..+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+
T Consensus 42 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 42 KTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 3444444 34568999999999999999999987 789999999 888887765 24679999999987 433
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh-----hcC---
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV-----LLT--- 259 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--- 259 (296)
.||+|++.+++|++++.. .+|+++.++|+| ||++++.+...+.... ......++...++. ..+
T Consensus 120 ~~~D~I~~~~~l~~~~~~~--~~l~~~~~~L~~---gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDID--KALREMYRVLKP---GGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAE 191 (239)
T ss_pred CCccEEEEecccccCCCHH--HHHHHHHHhccC---CcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcH
Confidence 499999999999988754 789999999999 9999999876543321 10110111000000 000
Q ss_pred ---------ccccCHHHHHHHHHhcCCceeEEEEc-CCcceEEEEeC
Q 022515 260 ---------GTERDEKEWTKLFTYAGFSDYKIIPI-LGLRSLIEVYP 296 (296)
Q Consensus 260 ---------g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 296 (296)
...++.++|.++++++||+.+++... .+...++.+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 12347899999999999999999986 46778888875
No 16
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.71 E-value=3e-16 Score=137.67 Aligned_cols=151 Identities=12% Similarity=0.094 Sum_probs=108.7
Q ss_pred HHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC-Ccc
Q 022515 120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI-SPA 190 (296)
Q Consensus 120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~-p~~ 190 (296)
++..+. ..++.+|||||||+|.++..++...+. .++++|. +.++..++. ...++.+..+++.+ +. ..|
T Consensus 113 ~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 113 VLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 444443 345689999999999999999888654 7999999 777654321 35688888888776 33 369
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCC--chhhhhhhhhhhhhhhcCccccCHHHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDD--KSIETQLFFDMLMMVLLTGTERDEKEW 268 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~rt~~e~ 268 (296)
|+|++..+|||+++.. .+|++++++|+| ||.+++.+...+...... |........+. -...+.+++
T Consensus 190 D~V~s~gvL~H~~dp~--~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~l~p~~ry~k~~nv-------~flpS~~~L 257 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPL--EHLKQLKHQLVI---KGELVLETLVIDGDLNTVLVPKDRYAKMKNV-------YFIPSVSAL 257 (314)
T ss_pred CEEEEcchhhccCCHH--HHHHHHHHhcCC---CCEEEEEEEEecCccccccCchHHHHhcccc-------ccCCCHHHH
Confidence 9999999999998764 789999999999 999998877655432210 00011000010 123488999
Q ss_pred HHHHHhcCCceeEEEEc
Q 022515 269 TKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 269 ~~ll~~aGf~~~~~~~~ 285 (296)
..+++++||+.+++...
T Consensus 258 ~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 258 KNWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHHHCCCeEEEEEec
Confidence 99999999999988765
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.70 E-value=8.1e-17 Score=120.96 Aligned_cols=99 Identities=23% Similarity=0.415 Sum_probs=84.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccC-CC-CC-CccceeEehh-h
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDM-FE-AI-SPADAVLLKW-I 198 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~-~~-~~-p~~D~v~~~~-v 198 (296)
++.+|||||||+|.++..+++.+|+.+++++|+ |++++.+++ ..+||+++.+|+ .. +. ++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 357999999999999999999999999999999 999988876 579999999999 33 33 3699999999 6
Q ss_pred hccCCc-hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 199 LHDWND-EECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 199 lh~~~d-~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+|++.. ++..++|+++++.|+| ||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 665543 5677999999999999 88888765
No 18
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.70 E-value=5.1e-16 Score=130.88 Aligned_cols=168 Identities=15% Similarity=0.197 Sum_probs=122.6
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--cc
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PA 190 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~ 190 (296)
.++..+. ..++.+|||+|||+|..+..+++.+|. .+++++|+ +.+++.+++ ...++++..+|+.+ +.+ .|
T Consensus 30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (223)
T TIGR01934 30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSF 107 (223)
T ss_pred HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcE
Confidence 3344443 346789999999999999999999987 79999999 888887765 34689999999987 443 49
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcC-----------
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLT----------- 259 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 259 (296)
|+|+++.++|+.++.. .+++++++.|+| ||++++.+...+.... +......+...++...+
T Consensus 108 D~i~~~~~~~~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQ--KALREMYRVLKP---GGRLVILEFSKPANAL---LKKFYKFYLKNVLPSIGGLISKNAEAYT 179 (223)
T ss_pred EEEEEeeeeCCcccHH--HHHHHHHHHcCC---CcEEEEEEecCCCchh---hHHHHHHHHHHhhhhhhhhhcCCchhhH
Confidence 9999999999887754 789999999999 9999998876543211 10100111111110000
Q ss_pred ------ccccCHHHHHHHHHhcCCceeEEEEcCC-cceEEEEeC
Q 022515 260 ------GTERDEKEWTKLFTYAGFSDYKIIPILG-LRSLIEVYP 296 (296)
Q Consensus 260 ------g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~ 296 (296)
....+.++|.++|+++||+.+.+.+..+ ...++++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 180 YLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 1223789999999999999999998864 467887765
No 19
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.70 E-value=2.6e-16 Score=132.98 Aligned_cols=137 Identities=15% Similarity=0.219 Sum_probs=109.0
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhhccC
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWILHDW 202 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~ 202 (296)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 888887765 46789999999976 444 49999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEE
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKI 282 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 282 (296)
++. ..+|++++++|+| ||++++.+...+..... .. .. ......+.++|.++++++||++++.
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~---~~--~~--------~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAI---EH--EE--------TTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCccc---cc--cc--------cccccCCHHHHHHHHHHCCCeEEEe
Confidence 875 4899999999999 99999998754321110 00 00 0111348899999999999999988
Q ss_pred EEcC
Q 022515 283 IPIL 286 (296)
Q Consensus 283 ~~~~ 286 (296)
..+.
T Consensus 143 ~~~~ 146 (224)
T smart00828 143 VDAS 146 (224)
T ss_pred EECc
Confidence 7653
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.70 E-value=4.1e-16 Score=138.22 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=106.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhhc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWILH 200 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh 200 (296)
.+.+|||||||+|.++..+++..+. +++++|. +.++..++. ...+++++.+|+.+ +.+ .||+|++..++|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4579999999999999999998765 5999998 666654321 24589999999887 544 499999999999
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
|..+.. .+|++++++|+| ||.+++.+...+...... ......+.. |. ..-..+|.+++.++|+++||+++
T Consensus 201 H~~dp~--~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~--~~--~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 201 HRRSPL--DHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAK--MR--NVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred ccCCHH--HHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhc--Cc--cceeCCCHHHHHHHHHHcCCceE
Confidence 988764 789999999999 999987666555433211 000001100 00 00123589999999999999999
Q ss_pred EEEEc
Q 022515 281 KIIPI 285 (296)
Q Consensus 281 ~~~~~ 285 (296)
++...
T Consensus 271 ~~~~~ 275 (322)
T PRK15068 271 RIVDV 275 (322)
T ss_pred EEEeC
Confidence 88765
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=1e-15 Score=126.63 Aligned_cols=142 Identities=17% Similarity=0.216 Sum_probs=108.2
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS- 188 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p- 188 (296)
.+.+++.++ ..+..+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ...++++...|+.+ +++
T Consensus 19 ~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (197)
T PRK11207 19 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG 94 (197)
T ss_pred hHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence 345566665 455689999999999999999986 579999999 889888765 23458899999877 444
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW 268 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~ 268 (296)
.||+|++..++|++++++...++++++++|+| ||++++++....+....+ . . .....+.+|+
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~---~-----~-------~~~~~~~~el 156 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---V-----G-------FPFAFKEGEL 156 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC---C-----C-------CCCccCHHHH
Confidence 59999999999998888888999999999999 999877765544321110 0 0 0112378899
Q ss_pred HHHHHhcCCceeEE
Q 022515 269 TKLFTYAGFSDYKI 282 (296)
Q Consensus 269 ~~ll~~aGf~~~~~ 282 (296)
.++++ ||+++..
T Consensus 157 ~~~~~--~~~~~~~ 168 (197)
T PRK11207 157 RRYYE--GWEMVKY 168 (197)
T ss_pred HHHhC--CCeEEEe
Confidence 88887 8987765
No 22
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.68 E-value=1.2e-15 Score=132.71 Aligned_cols=146 Identities=18% Similarity=0.338 Sum_probs=112.5
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~~D~v~~~~ 197 (296)
+.++.+|||||||+|..+..+++.. +..+++++|+ +.+++.|++ ..++++++.+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5677899999999999888777764 5678999999 999998876 34689999999987 554 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF 277 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf 277 (296)
++|++++.. +++++++++|+| ||++++.+......... . ...+..++....+...+.++|.++++++||
T Consensus 155 v~~~~~d~~--~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDKE--RVFKEAFRVLKP---GGRFAISDVVLRGELPE----E--IRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCHH--HHHHHHHHHcCC---CcEEEEEEeeccCCCCH----H--HHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 999888754 789999999999 99999998775432111 1 111222222223456689999999999999
Q ss_pred ceeEEEE
Q 022515 278 SDYKIIP 284 (296)
Q Consensus 278 ~~~~~~~ 284 (296)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9887754
No 23
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.67 E-value=1.1e-15 Score=126.00 Aligned_cols=145 Identities=19% Similarity=0.282 Sum_probs=110.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCC------CeEEeccc-hhHhhccCC--------CCCCeeEEeccCCC-CCCc--c
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPK------LECTCFDL-PHVVNGLDS--------DLANLKYVGGDMFE-AISP--A 190 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~D~~~-~~p~--~ 190 (296)
..+.++|||+||||..+..+++.-+. .+++++|+ |+|+..+++ ...++.++++|..+ |+|. +
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 45689999999999999999998776 79999999 999988765 34569999999999 8884 9
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhh--hhhhhh---------------h
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET--QLFFDM---------------L 253 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~--~~~~~~---------------~ 253 (296)
|.|++.+-+.+|++.+ +.|++++|+||| ||++.+.|.---+... ...+ ..+++. .
T Consensus 179 D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~~iagd~~sYq 250 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGEIIAGDRKSYQ 250 (296)
T ss_pred eeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccccHH---HHHHHHhhhhhhhchhhHhhhhhHhhhh
Confidence 9999999999999976 889999999999 9999999864433111 1010 011111 1
Q ss_pred hhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515 254 MMVLLTGTERDEKEWTKLFTYAGFSDYK 281 (296)
Q Consensus 254 ~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 281 (296)
+++..=-+..+.+++..+.++|||+.+.
T Consensus 251 YLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 251 YLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 1111101233889999999999999886
No 24
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.66 E-value=5.1e-16 Score=134.09 Aligned_cols=161 Identities=11% Similarity=0.099 Sum_probs=113.2
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCc
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISP 189 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~ 189 (296)
...+++.+. ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ ..+++++...|+.+-.+.
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 356677776 8899999999999999999999999 899999999 888877654 578999999999873337
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhh-hhhhhhhhhhhcCccccCHHHH
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET-QLFFDMLMMVLLTGTERDEKEW 268 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~rt~~e~ 268 (296)
||.|++..++.|...+....+++++.+.|+| ||++++............ .... ..++. .....||...+.+++
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~-~~~~~~~~i~--kyiFPgg~lps~~~~ 201 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHA-ERRSSSDFIR--KYIFPGGYLPSLSEI 201 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHH-CTTCCCHHHH--HHTSTTS---BHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchh-hcCCCceEEE--EeeCCCCCCCCHHHH
Confidence 9999999999999988888999999999999 999988777665432110 0000 01222 222357788899999
Q ss_pred HHHHHhcCCceeEEEEcC
Q 022515 269 TKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 269 ~~ll~~aGf~~~~~~~~~ 286 (296)
...++++||++..+...+
T Consensus 202 ~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHTT-EEEEEEE-H
T ss_pred HHHHhcCCEEEEEEEEcC
Confidence 999999999998887653
No 25
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.66 E-value=6.3e-16 Score=136.25 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=105.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~vl 199 (296)
.+.+|||||||+|.++..+++. +.+++++|. +++++.|++ ...+++++.+|+.+ +.+ .||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4569999999999999988763 789999999 999998875 23589999999876 433 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhh-hhhhhhcC----ccccCHHHHHHHHHh
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFD-MLMMVLLT----GTERDEKEWTKLFTY 274 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----g~~rt~~e~~~ll~~ 274 (296)
||+++.. .+|++++++|+| ||.+++.+....... +........ +..+...+ .+..+++|+.+++++
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~----~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~ 279 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMRA----YASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR 279 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHH----HHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH
Confidence 9999875 789999999999 898888864321100 000000000 00001111 235699999999999
Q ss_pred cCCceeEEEEc
Q 022515 275 AGFSDYKIIPI 285 (296)
Q Consensus 275 aGf~~~~~~~~ 285 (296)
+||+++++..+
T Consensus 280 aGf~i~~~~G~ 290 (322)
T PLN02396 280 ASVDVKEMAGF 290 (322)
T ss_pred cCCeEEEEeee
Confidence 99999887543
No 26
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=1.8e-15 Score=129.09 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=129.8
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCc
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISP 189 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~ 189 (296)
...+++.+. ++++.+|||||||-|.+++..+++| +.+++++++ +++.+.+++ ..+++++...|+.+..+.
T Consensus 61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 456677777 8999999999999999999999999 999999999 888887765 467999999999885445
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT 269 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~ 269 (296)
||-|++..+++|+..+.-..+++++++.|+| ||++++.....+..... ....+..- ....||...+.+++.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~----~~~~~i~~--yiFPgG~lPs~~~i~ 208 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFR----RFPDFIDK--YIFPGGELPSISEIL 208 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCcccc----cchHHHHH--hCCCCCcCCCHHHHH
Confidence 9999999999999998888999999999999 99999998877664331 11112221 123588888999999
Q ss_pred HHHHhcCCceeEEEEcC
Q 022515 270 KLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 270 ~ll~~aGf~~~~~~~~~ 286 (296)
+..+++||.+..+...+
T Consensus 209 ~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 209 ELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHhcCcEEehHhhhc
Confidence 99999999988766543
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.65 E-value=2.6e-16 Score=124.97 Aligned_cols=136 Identities=21% Similarity=0.422 Sum_probs=101.5
Q ss_pred CCCEEEEecCCchHHHHHHH-HHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC-ccceeEehhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIA-KAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS-PADAVLLKWI 198 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p-~~D~v~~~~v 198 (296)
+..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.|++ ..++++|..+|+.+ + ++ .||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 56799999999999999999 5688999999999 999999876 35589999999999 5 43 6999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh--hhhhh-cCccccCHHHHHHHHHhc
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM--LMMVL-LTGTERDEKEWTKLFTYA 275 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~g~~rt~~e~~~ll~~a 275 (296)
+|++++.. .+|+++.+.|++ ||.+++.+......... .......+ ..... ..+. +.++|..+|++|
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a 151 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKP---GGILIISDPNHNDELPE----QLEELMNLYSEVWSMIYIGN--DKEEWKYILEEA 151 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEEHSHHHHH----HHHHHHHHHHHHHHHCC-----CCCGHHHHHHHT
T ss_pred hhhccCHH--HHHHHHHHHcCC---CcEEEEEECChHHHHHH----HHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhc
Confidence 99999875 789999999999 89998888773221000 00011111 11101 1122 778999999999
Q ss_pred C
Q 022515 276 G 276 (296)
Q Consensus 276 G 276 (296)
|
T Consensus 152 g 152 (152)
T PF13847_consen 152 G 152 (152)
T ss_dssp T
T ss_pred C
Confidence 8
No 28
>PRK08317 hypothetical protein; Provisional
Probab=99.65 E-value=5.3e-15 Score=125.90 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=113.1
Q ss_pred HHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--cc
Q 022515 120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PA 190 (296)
Q Consensus 120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~ 190 (296)
+++.+. ..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ...++++..+|+.. +++ .|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 444444 6677899999999999999999988 7889999999 888877764 35679999999877 543 49
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCch-hhhhhhhhhhhhhhcCccccCHHHHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKS-IETQLFFDMLMMVLLTGTERDEKEWT 269 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~rt~~e~~ 269 (296)
|+|++.+++|++++.. .+++++.++|+| ||++++.+.........+.. .........+ ........+..+|.
T Consensus 89 D~v~~~~~~~~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 161 (241)
T PRK08317 89 DAVRSDRVLQHLEDPA--RALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFW--SDHFADPWLGRRLP 161 (241)
T ss_pred eEEEEechhhccCCHH--HHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHH--HhcCCCCcHHHHHH
Confidence 9999999999998864 789999999999 99999988543211111000 0111111111 11122344667899
Q ss_pred HHHHhcCCceeEEEEc
Q 022515 270 KLFTYAGFSDYKIIPI 285 (296)
Q Consensus 270 ~ll~~aGf~~~~~~~~ 285 (296)
++++++||+++++...
T Consensus 162 ~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 162 GLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHcCCCceeEEEE
Confidence 9999999998766543
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.65 E-value=1.5e-15 Score=130.83 Aligned_cols=149 Identities=16% Similarity=0.150 Sum_probs=106.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--CCC--ccceeEehh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--AIS--PADAVLLKW 197 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~~p--~~D~v~~~~ 197 (296)
.++.+|||||||+|.++..+++. +.+++++|+ +++++.|++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 35679999999999999999987 578999999 999998875 24689999999876 232 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh---hh-----hhhcCccccCHHHHH
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM---LM-----MVLLTGTERDEKEWT 269 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~g~~rt~~e~~ 269 (296)
++|+++++. .+|+++.++|+| ||++++........... ......+.. .+ .........+++++.
T Consensus 121 vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 192 (255)
T PRK11036 121 VLEWVADPK--SVLQTLWSVLRP---GGALSLMFYNANGLLMH---NMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVY 192 (255)
T ss_pred HHHhhCCHH--HHHHHHHHHcCC---CeEEEEEEECccHHHHH---HHHccChHHHHhcCccccccCCCCCCCCCHHHHH
Confidence 999998765 789999999999 99998875432210000 000000000 00 000112235789999
Q ss_pred HHHHhcCCceeEEEEcCC
Q 022515 270 KLFTYAGFSDYKIIPILG 287 (296)
Q Consensus 270 ~ll~~aGf~~~~~~~~~~ 287 (296)
++++++||+++.+.-+..
T Consensus 193 ~~l~~aGf~~~~~~gi~~ 210 (255)
T PRK11036 193 QWLEEAGWQIMGKTGVRV 210 (255)
T ss_pred HHHHHCCCeEeeeeeEEE
Confidence 999999999987665543
No 30
>PRK06922 hypothetical protein; Provisional
Probab=99.64 E-value=1.4e-15 Score=142.43 Aligned_cols=143 Identities=20% Similarity=0.289 Sum_probs=109.0
Q ss_pred CchhhcccCchHHHHHHHHHHccchh--chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHh
Q 022515 90 TLWEYAGDEPKLNNFFNEAMASDAWL--ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVV 166 (296)
Q Consensus 90 ~~~~~~~~~~~~~~~f~~~m~~~~~~--~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~ 166 (296)
.+|+++...++...+|...|...... ........++ +.++.+|||||||+|.++..+++.+|+.+++++|+ +.++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML 455 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI 455 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 56777777777777776655432221 1122222334 44678999999999999999999999999999999 8899
Q ss_pred hccCC----CCCCeeEEeccCCC-C--CC--ccceeEehhhhccC-----------CchHHHHHHHHHHHhcccCCCCcE
Q 022515 167 NGLDS----DLANLKYVGGDMFE-A--IS--PADAVLLKWILHDW-----------NDEECVKILKKCKEAITSDGKKGK 226 (296)
Q Consensus 167 ~~a~~----~~~ri~~~~~D~~~-~--~p--~~D~v~~~~vlh~~-----------~d~~~~~iL~~~~~aL~p~~~gG~ 226 (296)
+.|++ ...+++++.+|..+ + ++ .||+|+++.++|+| ++++..++|++++++||| ||+
T Consensus 456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GGr 532 (677)
T PRK06922 456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GGR 532 (677)
T ss_pred HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---CcE
Confidence 88865 23578889999876 3 33 49999999999986 245678999999999999 999
Q ss_pred EEEEeeeeCCC
Q 022515 227 VIIIDMIRENK 237 (296)
Q Consensus 227 lli~e~~~~~~ 237 (296)
+++.|...++.
T Consensus 533 LII~D~v~~E~ 543 (677)
T PRK06922 533 IIIRDGIMTED 543 (677)
T ss_pred EEEEeCccCCc
Confidence 99999766543
No 31
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.63 E-value=1.8e-15 Score=120.84 Aligned_cols=135 Identities=21% Similarity=0.264 Sum_probs=96.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC---CCCccceeEehhhhccCC
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE---AISPADAVLLKWILHDWN 203 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~---~~p~~D~v~~~~vlh~~~ 203 (296)
..+..+|||||||+|.++..+.+.. .+++++|+ +.+++. ..+.....+... +...||+|++..+|||++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 4567899999999999999996653 39999999 888876 122333222223 223599999999999999
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh--cCccccCHHHHHHHHHhcCCceeE
Q 022515 204 DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL--LTGTERDEKEWTKLFTYAGFSDYK 281 (296)
Q Consensus 204 d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~rt~~e~~~ll~~aGf~~~~ 281 (296)
+. ..+|+++++.|+| ||.+++.+...... ....+....+... .....++.++|+++++++||++++
T Consensus 93 d~--~~~l~~l~~~Lkp---gG~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 DP--EEFLKELSRLLKP---GGYLVISDPNRDDP-------SPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HH--HHHHHHHHHCEEE---EEEEEEEEEBTTSH-------HHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cH--HHHHHHHHHhcCC---CCEEEEEEcCCcch-------hhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 74 4899999999999 89988888765321 0011111111111 234567999999999999999875
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.61 E-value=1.1e-14 Score=125.82 Aligned_cols=107 Identities=17% Similarity=0.298 Sum_probs=91.6
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CC-Ccccee
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AI-SPADAV 193 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~-p~~D~v 193 (296)
...++..++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++...+++++.+|+.+ .. ..||+|
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 445666666 66788999999999999999999999999999999 99999988655679999999876 22 369999
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
+++.++|+.++.. .+|++++++|+| ||++++.
T Consensus 98 ~~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDHL--ELFPRLVSLLAP---GGVLAVQ 129 (258)
T ss_pred EEccChhhCCCHH--HHHHHHHHhcCC---CcEEEEE
Confidence 9999999888754 789999999999 8988775
No 33
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.61 E-value=8.8e-15 Score=123.25 Aligned_cols=184 Identities=10% Similarity=0.041 Sum_probs=120.1
Q ss_pred CchhhcccCchHHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhc
Q 022515 90 TLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNG 168 (296)
Q Consensus 90 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~ 168 (296)
..|+.+...+.....+...|......+...++..+.....+..+|||||||+|.++..+++. +.+++++|+ +.++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~ 92 (219)
T TIGR02021 15 QRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQM 92 (219)
T ss_pred HHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHH
Confidence 34555555444444444444333333334444444311235689999999999999999886 558999999 999988
Q ss_pred cCC------CCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc
Q 022515 169 LDS------DLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK 242 (296)
Q Consensus 169 a~~------~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~ 242 (296)
|++ ..+++++..+|+.+....||+|++..++++++.++...+++++.+.+++ |.++.+. +.. . .
T Consensus 93 a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~----~~~i~~~---~~~-~--~ 162 (219)
T TIGR02021 93 ARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE----RVIFTFA---PKT-A--W 162 (219)
T ss_pred HHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC----CEEEEEC---CCc-h--H
Confidence 875 2358999999988733569999999999999887778899999998876 4333321 111 0 0
Q ss_pred hhhhhhhhhhhhhhh---cCccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515 243 SIETQLFFDMLMMVL---LTGTERDEKEWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 243 ~~~~~~~~~~~~~~~---~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 286 (296)
. .....+...+... ..-..++.+++.++++++||+++......
T Consensus 163 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 163 L-AFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred H-HHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 0 0000111100000 01123489999999999999999887653
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.61 E-value=1.3e-14 Score=119.98 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=104.9
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-cc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~ 190 (296)
..+++.+. ..++.+|||+|||+|.++..++++ +.+++++|+ +.+++.+++ ..-++++...|+.. +.+ .|
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 45555555 445679999999999999999986 679999999 889987764 12247777788765 433 59
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK 270 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 270 (296)
|+|++..++|+++.++...++++++++|+| ||++++++....+.....+ . .....+++|+.+
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~~--------~-------~~~~~~~~el~~ 157 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCHM--------P-------FSFTFKEDELRQ 157 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCCC--------C-------cCccCCHHHHHH
Confidence 999999999999888888999999999999 9998887765433211100 0 011238899999
Q ss_pred HHHhcCCceeEEE
Q 022515 271 LFTYAGFSDYKII 283 (296)
Q Consensus 271 ll~~aGf~~~~~~ 283 (296)
+++ +|+++...
T Consensus 158 ~f~--~~~~~~~~ 168 (195)
T TIGR00477 158 YYA--DWELLKYN 168 (195)
T ss_pred HhC--CCeEEEee
Confidence 886 48777665
No 35
>PRK06202 hypothetical protein; Provisional
Probab=99.59 E-value=3.6e-14 Score=120.59 Aligned_cols=146 Identities=22% Similarity=0.201 Sum_probs=101.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHH----CCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CC-C-ccceeEehhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKA----FPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AI-S-PADAVLLKWI 198 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~-p-~~D~v~~~~v 198 (296)
.+..+|||||||+|.++..|++. .|+.+++++|+ +.+++.|++ ...++++...+... +. + .||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46679999999999999888764 45679999999 999998876 33456666655433 22 2 5999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhh----hhcC-----ccccCHHHHH
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMM----VLLT-----GTERDEKEWT 269 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----g~~rt~~e~~ 269 (296)
+||+++++..++|++++++++ |.+++.+...+... + ........... .... -+.++.+|+.
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~----~-~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLA----Y-ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHH----H-HHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 999999887899999999986 56666665443210 0 00000000000 0011 1345899999
Q ss_pred HHHHhcCCceeEEEEc
Q 022515 270 KLFTYAGFSDYKIIPI 285 (296)
Q Consensus 270 ~ll~~aGf~~~~~~~~ 285 (296)
+++++ ||++....+.
T Consensus 209 ~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 209 ALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHhhC-CCeEEeccce
Confidence 99999 9998776654
No 36
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.59 E-value=5.7e-15 Score=107.07 Aligned_cols=89 Identities=22% Similarity=0.369 Sum_probs=76.9
Q ss_pred EEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC--ccceeEehhhhccCCchHHH
Q 022515 135 VDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEECV 208 (296)
Q Consensus 135 LDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~~~ 208 (296)
||+|||+|..+..++++ +..+++++|+ +++++.+++ ...++++..+|+.+ +++ .||+|++.+++|++++ ..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HH
Confidence 89999999999999998 8899999999 899998887 56677899999998 766 3999999999999944 45
Q ss_pred HHHHHHHHhcccCCCCcEEEE
Q 022515 209 KILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 209 ~iL~~~~~aL~p~~~gG~lli 229 (296)
+++++++|+||| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 899999999999 888875
No 37
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=116.66 Aligned_cols=166 Identities=14% Similarity=0.210 Sum_probs=122.1
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC--CCCccceeE
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE--AISPADAVL 194 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~--~~p~~D~v~ 194 (296)
..++...+ .....+|+|+|||+|..+..|++++|...++++|. ++|++.|++...+++|..+|+.+ +-+..|+++
T Consensus 20 ~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 20 RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 45677777 77889999999999999999999999999999999 99999997778889999999988 334699999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh----hhhc------CccccC
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM----MVLL------TGTERD 264 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~g~~rt 264 (296)
.+-+||..+|- .++|.++...|.| ||.|.+-=. +.-..+ .+..+.+.-- -... .....+
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQmP---dN~dep---sH~~mr~~A~~~p~~~~l~~~~~~r~~v~s 166 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQMP---DNLDEP---SHRLMRETADEAPFAQELGGRGLTRAPLPS 166 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhCC---CceEEEECC---CccCch---hHHHHHHHHhcCchhhhhCccccccCCCCC
Confidence 99999988875 4889999999999 887766432 221111 1111211110 0011 223448
Q ss_pred HHHHHHHHHhcCCceeEE-----EEcCCcceEEEEeC
Q 022515 265 EKEWTKLFTYAGFSDYKI-----IPILGLRSLIEVYP 296 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~~-----~~~~~~~~vi~~~~ 296 (296)
+..|-++|...+-++--. +++++...|++++|
T Consensus 167 ~a~Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 167 PAAYYELLAPLACRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHHHHhCcccceeeeeeeeccccCCCccchhhhee
Confidence 899999999887654332 23456677877764
No 38
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.57 E-value=5.4e-14 Score=119.73 Aligned_cols=137 Identities=17% Similarity=0.207 Sum_probs=104.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND 204 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d 204 (296)
...+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 347899999999999999999999999999999 888887765 44689999999987 543 4999999999998877
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEE
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII 283 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 283 (296)
.. .+|++++++|+| ||.+++.+...... .. +.... ...+....+.++|.++++++ |+...+.
T Consensus 114 ~~--~~l~~~~~~L~~---~G~l~~~~~~~~~~------~~---~~~~~--~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 LS--QALSELARVLKP---GGLLAFSTFGPGTL------HE---LRQSF--GQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred HH--HHHHHHHHHcCC---CcEEEEEeCCccCH------HH---HHHHH--HHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 54 789999999999 89988875432210 01 11110 00223455889999999998 8866543
No 39
>PRK05785 hypothetical protein; Provisional
Probab=99.57 E-value=8.3e-14 Score=117.61 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=104.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCch
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDE 205 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~ 205 (296)
++.+|||||||+|.++..+++.+ +.+++++|+ ++|++.|++. ..++.+|+.+ +++ .||+|++..++|++++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 46799999999999999999987 679999999 9999998732 3467888887 665 49999999999999886
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh------h-hhcCc-------------cccCH
Q 022515 206 ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM------M-VLLTG-------------TERDE 265 (296)
Q Consensus 206 ~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~g-------------~~rt~ 265 (296)
+ +.|++++++|+| . +.++|...++... ...++.+++ . ..+++ ...+.
T Consensus 127 ~--~~l~e~~RvLkp---~--~~ile~~~p~~~~------~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~ 193 (226)
T PRK05785 127 E--KVIAEFTRVSRK---Q--VGFIAMGKPDNVI------KRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTN 193 (226)
T ss_pred H--HHHHHHHHHhcC---c--eEEEEeCCCCcHH------HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCH
Confidence 5 789999999998 3 3345543332210 111111111 0 01122 12278
Q ss_pred HHHHHHHHhcCCceeEEEEcC-CcceEEEEeC
Q 022515 266 KEWTKLFTYAGFSDYKIIPIL-GLRSLIEVYP 296 (296)
Q Consensus 266 ~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 296 (296)
+++.++++++| +.++.+... |...+..++|
T Consensus 194 ~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 194 SFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 99999999984 667777764 5556666553
No 40
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.56 E-value=1.2e-13 Score=118.70 Aligned_cols=148 Identities=11% Similarity=0.128 Sum_probs=104.9
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccc
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PAD 191 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D 191 (296)
.+..+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++....+.++.+|+.+ +++ .||
T Consensus 30 ~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 30 SADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 3445555555 345689999999999999888764 579999999 99999887533446789999987 554 499
Q ss_pred eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhh-hhhhhhhhhhcCccccCHHHHHH
Q 022515 192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQ-LFFDMLMMVLLTGTERDEKEWTK 270 (296)
Q Consensus 192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~rt~~e~~~ 270 (296)
+|+++.++|+.++. ..+|+++.++|+| ||.+++........ .... .+..+. .........+.+++.+
T Consensus 106 ~V~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~------~el~~~~~~~~-~~~~~~~~~~~~~l~~ 173 (251)
T PRK10258 106 LAWSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLVQGSL------PELHQAWQAVD-ERPHANRFLPPDAIEQ 173 (251)
T ss_pred EEEECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCCCCch------HHHHHHHHHhc-cCCccccCCCHHHHHH
Confidence 99999999877665 4789999999999 89888876532211 0111 111100 0011223458899999
Q ss_pred HHHhcCCce
Q 022515 271 LFTYAGFSD 279 (296)
Q Consensus 271 ll~~aGf~~ 279 (296)
++...|++.
T Consensus 174 ~l~~~~~~~ 182 (251)
T PRK10258 174 ALNGWRYQH 182 (251)
T ss_pred HHHhCCcee
Confidence 999888764
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.56 E-value=1.2e-15 Score=112.12 Aligned_cols=88 Identities=22% Similarity=0.387 Sum_probs=59.5
Q ss_pred EEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCC---CeeEEeccCCCC-CC-ccceeEehhhhccCC
Q 022515 135 VDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLA---NLKYVGGDMFEA-IS-PADAVLLKWILHDWN 203 (296)
Q Consensus 135 LDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~---ri~~~~~D~~~~-~p-~~D~v~~~~vlh~~~ 203 (296)
||||||+|.++..+++.+|..+++++|+ +.+++.+++ ... ++++...|..+. .+ .||+|++.+++|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 999988876 222 344455555542 33 699999999999995
Q ss_pred chHHHHHHHHHHHhcccCCCCcEE
Q 022515 204 DEECVKILKKCKEAITSDGKKGKV 227 (296)
Q Consensus 204 d~~~~~iL~~~~~aL~p~~~gG~l 227 (296)
+ ...+|+++++.|+| ||++
T Consensus 81 ~--~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS---S-EE
T ss_pred h--HHHHHHHHHHHcCC---CCCC
Confidence 4 45899999999999 8875
No 42
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.56 E-value=1.3e-13 Score=119.08 Aligned_cols=100 Identities=13% Similarity=0.234 Sum_probs=83.6
Q ss_pred CCCCEEEEecCCchH----HHHHHHHHCC-----CCeEEeccc-hhHhhccCC-C-------------------------
Q 022515 129 EGLNSLVDVGGGIGT----AAKAIAKAFP-----KLECTCFDL-PHVVNGLDS-D------------------------- 172 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~-~------------------------- 172 (296)
.+..+|+|+|||+|. +++.+++.+| +.++++.|+ +.+++.|++ .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 5666666654 578999999 999998876 1
Q ss_pred ------CCCeeEEeccCCC-CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 173 ------LANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 173 ------~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
..+|+|..+|+.+ +.+ .||+|++.++||++++++..+++++++++|+| ||.+++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 1479999999998 333 49999999999999988888999999999999 99988865
No 43
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.56 E-value=1.3e-14 Score=120.44 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=107.2
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCC----CeeEEeccCCCCCCccceeEehhh
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLA----NLKYVGGDMFEAISPADAVLLKWI 198 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~----ri~~~~~D~~~~~p~~D~v~~~~v 198 (296)
+++|||||||+|-++..|++. +.+++++|+ +.+++.|++ ... |+++.+.|.....+.||+|+++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 478999999999999999998 689999999 999998876 233 588888888776666999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhh-hhhhc-C----ccccCHHHHHHHH
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML-MMVLL-T----GTERDEKEWTKLF 272 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~----g~~rt~~e~~~ll 272 (296)
+||..|++ .+++.+.+.|+| +|+++|......-.... ...+++-+ ..... | .+.-++++...++
T Consensus 168 leHV~dp~--~~l~~l~~~lkP---~G~lfittinrt~lS~~-----~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l 237 (282)
T KOG1270|consen 168 LEHVKDPQ--EFLNCLSALLKP---NGRLFITTINRTILSFA-----GTIFLAEIVLRIVPKGTHTWEKFINPEELTSIL 237 (282)
T ss_pred HHHHhCHH--HHHHHHHHHhCC---CCceEeeehhhhHHHhh-----ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH
Confidence 99998876 899999999999 99999988644322111 01111111 11122 2 2445899999999
Q ss_pred HhcCCceeEEE
Q 022515 273 TYAGFSDYKII 283 (296)
Q Consensus 273 ~~aGf~~~~~~ 283 (296)
..+|+++..+.
T Consensus 238 ~~~~~~v~~v~ 248 (282)
T KOG1270|consen 238 NANGAQVNDVV 248 (282)
T ss_pred HhcCcchhhhh
Confidence 99999876654
No 44
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.55 E-value=1.2e-13 Score=112.43 Aligned_cols=162 Identities=16% Similarity=0.127 Sum_probs=121.8
Q ss_pred CCCC-EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCC-eeEEeccCCCC---CC--------c
Q 022515 129 EGLN-SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLAN-LKYVGGDMFEA---IS--------P 189 (296)
Q Consensus 129 ~~~~-~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~r-i~~~~~D~~~~---~p--------~ 189 (296)
.... +||+||+|||..+.++++.+|+++..--|. +......+. ...+ ..-+..|..++ .+ .
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3444 599999999999999999999999888887 444322111 1122 12234455542 11 4
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh-cCccccCHHHH
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL-LTGTERDEKEW 268 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~rt~~e~ 268 (296)
||+|++.+++|..+.+.+..+++.+.++|+| ||.+++.-.+..+..-.+ .....+|-..... .....|+.+++
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v 176 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDV 176 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHH
Confidence 8999999999999999999999999999999 999999998776654322 3335566655544 24567899999
Q ss_pred HHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 269 TKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 269 ~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
.++.+++|++..+++.+|..+.+++.+|
T Consensus 177 ~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 177 EALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 9999999999999999998877777765
No 45
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.55 E-value=1.5e-13 Score=116.61 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=102.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCccceeEehhhhcc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISPADAVLLKWILHD 201 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~ 201 (296)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.|++ ..+++++..+|+....+.||+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456799999999999999999874 46999999 899988876 236899999995434346999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh------hcCccccCHHHHHHHHHhc
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV------LLTGTERDEKEWTKLFTYA 275 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~rt~~e~~~ll~~a 275 (296)
+++++...+++++.+.+++ +.++.... .... . ......... .......+.++|.++++++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~~---~~~~---~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFAP---YTPL---L----ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAA 205 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEECC---ccHH---H----HHHHHhccccCCccCCCCccccCHHHHHHHHHHC
Confidence 9998888999999987653 44433221 1100 0 011110000 0112345889999999999
Q ss_pred CCceeEEEEcC
Q 022515 276 GFSDYKIIPIL 286 (296)
Q Consensus 276 Gf~~~~~~~~~ 286 (296)
||++.++.+..
T Consensus 206 Gf~~~~~~~~~ 216 (230)
T PRK07580 206 GFKVVRTERIS 216 (230)
T ss_pred CCceEeeeecc
Confidence 99999988764
No 46
>PLN03075 nicotianamine synthase; Provisional
Probab=99.54 E-value=8e-14 Score=120.34 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=81.4
Q ss_pred CCCCEEEEecCCchHHHHH--HHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCCCC---CccceeEe
Q 022515 129 EGLNSLVDVGGGIGTAAKA--IAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFEAI---SPADAVLL 195 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~~~---p~~D~v~~ 195 (296)
.++.+|+|||||.|.++.. ++..+|+.+++++|. |++++.|++ ..+||+|..+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3778999999998855433 335689999999999 999988876 3578999999998732 36999999
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
. ++|+|+.++-.++|+++++.|+| ||.+++--
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEEec
Confidence 9 99999766667999999999999 77776643
No 47
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.54 E-value=1.4e-13 Score=113.05 Aligned_cols=126 Identities=18% Similarity=0.321 Sum_probs=97.5
Q ss_pred HHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC-cccee
Q 022515 121 IHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS-PADAV 193 (296)
Q Consensus 121 ~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p-~~D~v 193 (296)
+..+. ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ ...+++++.+|.....+ .||+|
T Consensus 24 ~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v 101 (187)
T PRK08287 24 LSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAI 101 (187)
T ss_pred HHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEE
Confidence 34444 56778999999999999999999999999999999 889888865 23579999999865444 59999
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHH
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFT 273 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~ 273 (296)
++....++ ...+++.+.+.|+| ||++++.....+ +.+++.++++
T Consensus 102 ~~~~~~~~-----~~~~l~~~~~~Lk~---gG~lv~~~~~~~----------------------------~~~~~~~~l~ 145 (187)
T PRK08287 102 FIGGSGGN-----LTAIIDWSLAHLHP---GGRLVLTFILLE----------------------------NLHSALAHLE 145 (187)
T ss_pred EECCCccC-----HHHHHHHHHHhcCC---CeEEEEEEecHh----------------------------hHHHHHHHHH
Confidence 99765443 24679999999999 898877432110 4567778999
Q ss_pred hcCCceeEEEE
Q 022515 274 YAGFSDYKIIP 284 (296)
Q Consensus 274 ~aGf~~~~~~~ 284 (296)
+.||+.+++..
T Consensus 146 ~~g~~~~~~~~ 156 (187)
T PRK08287 146 KCGVSELDCVQ 156 (187)
T ss_pred HCCCCcceEEE
Confidence 99998776543
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.53 E-value=1.1e-13 Score=129.63 Aligned_cols=145 Identities=18% Similarity=0.251 Sum_probs=111.7
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC---CCC-
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE---AIS- 188 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~---~~p- 188 (296)
...+++.++ ..+..+|||||||+|.++..+++.+ .+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 26 ~~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 345555555 4456799999999999999999874 48999999 899987654 35689999999864 344
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 267 (296)
.||+|++..++|++++++..++|+++++.|+| ||++++.|.......... .. ......++..+
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~------~~-------~~~~~~~~~~~ 165 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSK------RK-------NNPTHYREPRF 165 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCccc------cc-------CCCCeecChHH
Confidence 49999999999999998888999999999999 999999997654432110 00 01123457889
Q ss_pred HHHHHHhcCCceeE
Q 022515 268 WTKLFTYAGFSDYK 281 (296)
Q Consensus 268 ~~~ll~~aGf~~~~ 281 (296)
|.+++.++||....
T Consensus 166 ~~~~f~~~~~~~~~ 179 (475)
T PLN02336 166 YTKVFKECHTRDED 179 (475)
T ss_pred HHHHHHHheeccCC
Confidence 99999999987653
No 49
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.53 E-value=6.9e-14 Score=116.14 Aligned_cols=104 Identities=17% Similarity=0.293 Sum_probs=88.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCC--ccceeEehhhhccCCc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAIS--PADAVLLKWILHDWND 204 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~~~d 204 (296)
..+..+|||||||+|.++..+++..|+.+++++|+ +++++.|++...++++..+|+.++.+ .||+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34667899999999999999999889999999999 99999998534578889999888544 4999999999999987
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
++..++++++.++++ +.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 778899999999873 788888875543
No 50
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=1.7e-13 Score=120.02 Aligned_cols=132 Identities=18% Similarity=0.172 Sum_probs=101.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEehhhhccC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLKWILHDW 202 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~ 202 (296)
++.+|||||||+|..+..+++. +.+++++|. +.+++.+++ ..-++++...|+.. +.+ .||+|++..++|+.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4469999999999999999885 679999999 888887765 23378888889876 344 59999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEE
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKI 282 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 282 (296)
++++...+++++.++|+| ||.+++++....+....++ . ....++.+|+.+.++. |+++..
T Consensus 198 ~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~~--p-------------~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCPM--P-------------FSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCCC--C-------------CCcccCHHHHHHHhCC--CEEEEE
Confidence 888888999999999999 9998877654433221100 0 0122378899998875 887776
Q ss_pred E
Q 022515 283 I 283 (296)
Q Consensus 283 ~ 283 (296)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 3
No 51
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.52 E-value=3.4e-13 Score=109.99 Aligned_cols=134 Identities=17% Similarity=0.169 Sum_probs=105.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCC-CCccceeEehhhhccC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEA-ISPADAVLLKWILHDW 202 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~-~p~~D~v~~~~vlh~~ 202 (296)
.++.+|||+|||+|.++..+++..+ +++++|+ |.+++.+++ ...+++++.+|..+. .+.||+|+++-..|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999876 8999999 999988775 234688899998873 3469999998887766
Q ss_pred Cch-------------------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCcccc
Q 022515 203 NDE-------------------ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTER 263 (296)
Q Consensus 203 ~d~-------------------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r 263 (296)
++. ....+|+++.+.|+| ||++++.+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~---------------------------- 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN---------------------------- 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------
Confidence 532 135689999999999 999988774221
Q ss_pred CHHHHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515 264 DEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY 295 (296)
Q Consensus 264 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 295 (296)
...++.++++++||+...+...+-+.-.++++
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 25677889999999998888877666666554
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.52 E-value=2.3e-13 Score=123.28 Aligned_cols=154 Identities=8% Similarity=0.082 Sum_probs=114.0
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCCCCCccceeEe
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFEAISPADAVLL 195 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~~~p~~D~v~~ 195 (296)
.+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +++++.+++ ....+++..+|+.+..+.||+|++
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 4455555 6778899999999999999998876 679999999 999998876 233588888887653246999999
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA 275 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a 275 (296)
..+++|.++.....++++++++|+| ||++++.+...+..... ...+.+- ....+|...+.+++...++ .
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~-----~~~~i~~--yifp~g~lps~~~i~~~~~-~ 303 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTN-----VDPWINK--YIFPNGCLPSVRQIAQASE-G 303 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCC-----CCCCcee--eecCCCcCCCHHHHHHHHH-C
Confidence 9999999877777899999999999 99999887654432111 0112211 1224566678888888766 5
Q ss_pred CCceeEEEEcC
Q 022515 276 GFSDYKIIPIL 286 (296)
Q Consensus 276 Gf~~~~~~~~~ 286 (296)
||.+..+...+
T Consensus 304 ~~~v~d~~~~~ 314 (383)
T PRK11705 304 LFVMEDWHNFG 314 (383)
T ss_pred CcEEEEEecCh
Confidence 89887776544
No 53
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.51 E-value=5.2e-14 Score=103.76 Aligned_cols=89 Identities=24% Similarity=0.447 Sum_probs=75.0
Q ss_pred EEEecCCchHHHHHHHHHC---CCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CC--CccceeEeh-hhhcc
Q 022515 134 LVDVGGGIGTAAKAIAKAF---PKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AI--SPADAVLLK-WILHD 201 (296)
Q Consensus 134 vLDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~--p~~D~v~~~-~vlh~ 201 (296)
|||+|||+|..+..+++.+ |..+++++|+ +++++.+++ ...+++++.+|+.+ +. +.||+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999999 999998876 33589999999988 43 359999995 55999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCc
Q 022515 202 WNDEECVKILKKCKEAITSDGKKG 225 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG 225 (296)
+++++..++|+++.+.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999999 66
No 54
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.50 E-value=7.8e-14 Score=115.16 Aligned_cols=143 Identities=16% Similarity=0.162 Sum_probs=103.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CC--CccceeEehhhhcc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AI--SPADAVLLKWILHD 201 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~--p~~D~v~~~~vlh~ 201 (296)
.+.+|||||||.|.++..+++. +.+++++|+ ++.++.|+. ..-.+++.+....+ .. ..||+|++-.||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 5689999999999999999998 589999999 999999885 22335566665555 22 46999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh-hhh-hhcC-----ccccCHHHHHHHHHh
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM-LMM-VLLT-----GTERDEKEWTKLFTY 274 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-----g~~rt~~e~~~ll~~ 274 (296)
.++++ .+++++.+.+|| ||.+++......... + ....+.. ..+ .... .+...++|+..++..
T Consensus 137 v~dp~--~~~~~c~~lvkP---~G~lf~STinrt~ka----~--~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~ 205 (243)
T COG2227 137 VPDPE--SFLRACAKLVKP---GGILFLSTINRTLKA----Y--LLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLG 205 (243)
T ss_pred cCCHH--HHHHHHHHHcCC---CcEEEEeccccCHHH----H--HHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhccc
Confidence 99987 589999999999 888887765432110 0 0011100 111 1111 244578999999999
Q ss_pred cCCceeEEEEc
Q 022515 275 AGFSDYKIIPI 285 (296)
Q Consensus 275 aGf~~~~~~~~ 285 (296)
+|+.......+
T Consensus 206 ~~~~~~~~~g~ 216 (243)
T COG2227 206 ANLKIIDRKGL 216 (243)
T ss_pred CCceEEeecce
Confidence 99988776543
No 55
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.49 E-value=3.1e-13 Score=119.04 Aligned_cols=98 Identities=13% Similarity=0.249 Sum_probs=80.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC--CC-cc-----ce
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA--IS-PA-----DA 192 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~--~p-~~-----D~ 192 (296)
.++.+|||+|||+|..+..|+++.+ ..+++++|+ ++|++.+++ ...+|.++.+|+.+. .+ .+ .+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3557899999999999999999987 689999999 899887764 234577789999872 32 23 35
Q ss_pred eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
+++...+|+++++++..+|++++++|+| ||.++|
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 6667889999999999999999999999 888876
No 56
>PRK04266 fibrillarin; Provisional
Probab=99.48 E-value=1.4e-12 Score=109.65 Aligned_cols=134 Identities=12% Similarity=0.143 Sum_probs=94.6
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC-----CC-ccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA-----IS-PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~-----~p-~~D~v~~~~ 197 (296)
..++.+|||+|||+|.++..+++..+..+++++|+ +++++.+.+ ...++.++.+|...+ .+ .+|++++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~-- 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ-- 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE--
Confidence 66788999999999999999999987678999999 877764432 346789999998652 12 4899874
Q ss_pred hhccCCch-HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515 198 ILHDWNDE-ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG 276 (296)
Q Consensus 198 vlh~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG 276 (296)
+.+++ +...+|+++++.||| ||+++|.=...+-+.... . . +..++..++++++|
T Consensus 148 ---d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~~d~~~~---~---------------~-~~~~~~~~~l~~aG 202 (226)
T PRK04266 148 ---DVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKARSIDVTKD---P---------------K-EIFKEEIRKLEEGG 202 (226)
T ss_pred ---CCCChhHHHHHHHHHHHhcCC---CcEEEEEEecccccCcCC---H---------------H-HHHHHHHHHHHHcC
Confidence 44443 234568999999999 999999522111110000 0 0 11244569999999
Q ss_pred CceeEEEEcCCc
Q 022515 277 FSDYKIIPILGL 288 (296)
Q Consensus 277 f~~~~~~~~~~~ 288 (296)
|+.++.......
T Consensus 203 F~~i~~~~l~p~ 214 (226)
T PRK04266 203 FEILEVVDLEPY 214 (226)
T ss_pred CeEEEEEcCCCC
Confidence 999998887543
No 57
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.48 E-value=3.2e-13 Score=118.83 Aligned_cols=141 Identities=13% Similarity=0.080 Sum_probs=97.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----C------CCCeeEEeccCCCCCCccceeEehhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----D------LANLKYVGGDMFEAISPADAVLLKWI 198 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~------~~ri~~~~~D~~~~~p~~D~v~~~~v 198 (296)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . ..+++|..+|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4579999999999999999986 679999999 899988875 1 24688888887653346999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcC------ccccCHHHHHHHH
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLT------GTERDEKEWTKLF 272 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~rt~~e~~~ll 272 (296)
+||++++....+++++.+ +.+ |+++|.. .+.... +.....+... ..+ ...++.+++++++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~----g~liIs~--~p~~~~---~~~l~~~g~~----~~g~~~~~r~y~~s~eel~~lL 287 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE----KRLIISF--APKTLY---YDILKRIGEL----FPGPSKATRAYLHAEADVERAL 287 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC----CEEEEEe--CCcchH---HHHHHHHHhh----cCCCCcCceeeeCCHHHHHHHH
Confidence 999998877788888875 454 5555532 111100 0000000000 011 1123899999999
Q ss_pred HhcCCceeEEEEcC
Q 022515 273 TYAGFSDYKIIPIL 286 (296)
Q Consensus 273 ~~aGf~~~~~~~~~ 286 (296)
+++||++.......
T Consensus 288 ~~AGf~v~~~~~~~ 301 (315)
T PLN02585 288 KKAGWKVARREMTA 301 (315)
T ss_pred HHCCCEEEEEEEee
Confidence 99999987665443
No 58
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.48 E-value=2e-12 Score=107.94 Aligned_cols=132 Identities=13% Similarity=0.088 Sum_probs=101.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------------CCCCeeEEeccCCC-C---
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------------DLANLKYVGGDMFE-A--- 186 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~D~~~-~--- 186 (296)
.++.+|||+|||.|..+..|+++ +.+++++|+ |..++.+.+ ...+|++..+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999987 889999999 888876421 13579999999998 4
Q ss_pred CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCC-CCchhhhhhhhhhhhhhhcCccccCH
Q 022515 187 ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG-DDKSIETQLFFDMLMMVLLTGTERDE 265 (296)
Q Consensus 187 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~rt~ 265 (296)
.+.||.|+-..++|+++.+.....++++.++|+| ||++++.....++... .+| ...+.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~gpp------------------~~~~~ 169 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAGPP------------------FSVSP 169 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCCcC------------------CCCCH
Confidence 2359999999999999998888999999999999 8987777665432211 111 12388
Q ss_pred HHHHHHHHhcCCceeEEEE
Q 022515 266 KEWTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 266 ~e~~~ll~~aGf~~~~~~~ 284 (296)
+|+++++.. +|.+..+..
T Consensus 170 ~eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 170 AEVEALYGG-HYEIELLES 187 (213)
T ss_pred HHHHHHhcC-CceEEEEee
Confidence 999998874 455554443
No 59
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.46 E-value=2.5e-12 Score=105.02 Aligned_cols=119 Identities=23% Similarity=0.278 Sum_probs=93.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-ccceeEehhhhc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS-PADAVLLKWILH 200 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh 200 (296)
+++.+|||||||+|..+..+++..|+.+++++|. +.+++.+++ ..++++++.+|+.+ +.. .||+|++..+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 3478999999999999999999999999999999 899988765 23459999999887 333 5999998652
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
. ....+++.+++.|+| ||++++.+... ...++.++.++.|+++.
T Consensus 122 --~--~~~~~l~~~~~~Lkp---GG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 --A--SLSDLVELCLPLLKP---GGRFLALKGRD-----------------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred --c--CHHHHHHHHHHhcCC---CeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEe
Confidence 2 234789999999999 99988875210 23456677778899976
Q ss_pred EEEEc
Q 022515 281 KIIPI 285 (296)
Q Consensus 281 ~~~~~ 285 (296)
+++..
T Consensus 166 ~~~~~ 170 (187)
T PRK00107 166 EVIEL 170 (187)
T ss_pred eeEEE
Confidence 66543
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.46 E-value=7.4e-13 Score=107.64 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=84.8
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-cc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~ 190 (296)
..+++..+ .-++.++||+|||.|..+..|+++ +..++.+|. +..++.+++ ..-.|+....|+.+ .++ .|
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 34555555 445789999999999999999998 889999999 777776654 34449999999988 555 59
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
|+|++..|+++.+.+....+++++.++++| ||..++...+.
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~ 136 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFME 136 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB-
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecc
Confidence 999999999999999989999999999999 88777765543
No 61
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.46 E-value=1.3e-12 Score=117.44 Aligned_cols=109 Identities=16% Similarity=0.257 Sum_probs=87.8
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----C---CCCeeEEeccCCCCC-
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----D---LANLKYVGGDMFEAI- 187 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~---~~ri~~~~~D~~~~~- 187 (296)
..+++.++ .....+|||+|||+|.++..+++++|..+++++|. +.+++.+++ . ..++++...|.++..
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 34556665 33346999999999999999999999999999999 888888875 1 247899999998754
Q ss_pred C-ccceeEehhhhc---cCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 188 S-PADAVLLKWILH---DWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 188 p-~~D~v~~~~vlh---~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+ .||+|+++-.+| .+++..+.++++.+++.|+| ||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 3 599999965544 34556677999999999999 99998884
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.44 E-value=1.3e-12 Score=106.51 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=74.7
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC-CccceeEehhhhccC
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI-SPADAVLLKWILHDW 202 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~-p~~D~v~~~~vlh~~ 202 (296)
+.+|||||||+|.++..++..+|+.+++++|. +.+++.+++ ..++++++.+|+.+ +. +.||+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 67999999999999999999999999999999 888776654 33579999999987 32 3699998866 5432
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
..+++.+++.|+| ||++++..
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~~ 142 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAYK 142 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEEc
Confidence 3568888999999 89988763
No 63
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.43 E-value=7.9e-13 Score=105.97 Aligned_cols=174 Identities=20% Similarity=0.160 Sum_probs=114.6
Q ss_pred HHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCe
Q 022515 103 NFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANL 176 (296)
Q Consensus 103 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri 176 (296)
..|+..|..+-+-+...+-..+. .+....||+||||||..-. +..--|..++|++|. |.|.+.+.+ ...++
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~g--k~~K~~vLEvgcGtG~Nfk-fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLG--KSGKGDVLEVGCGTGANFK-FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhc--ccCccceEEecccCCCCcc-cccCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 34555566554333333221111 3445678999999998743 222236789999999 888887765 34556
Q ss_pred e-EEeccCCC-C-CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhh
Q 022515 177 K-YVGGDMFE-A-IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFD 251 (296)
Q Consensus 177 ~-~~~~D~~~-~-~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~ 251 (296)
. |+.++..+ + .+ ++|+|++..+|. +-++.++.|+++++.|+| ||+++++|+...+...-.. ......+
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLC--Sve~~~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~--i~q~v~e 200 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLC--SVEDPVKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNR--ILQQVAE 200 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEe--ccCCHHHHHHHHHHhcCC---CcEEEEEecccccchHHHH--HHHHHhc
Confidence 6 88888777 4 34 599999999997 444557999999999999 9999999998776543110 0111222
Q ss_pred hhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCC
Q 022515 252 MLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILG 287 (296)
Q Consensus 252 ~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 287 (296)
-.-...+.|-..|.+-| +.|++|-|+..+..+...
T Consensus 201 p~~~~~~dGC~ltrd~~-e~Leda~f~~~~~kr~~~ 235 (252)
T KOG4300|consen 201 PLWHLESDGCVLTRDTG-ELLEDAEFSIDSCKRFNF 235 (252)
T ss_pred hhhheeccceEEehhHH-HHhhhcccccchhhcccC
Confidence 21122345666677666 567888999888777643
No 64
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.42 E-value=2.5e-12 Score=110.06 Aligned_cols=144 Identities=11% Similarity=0.082 Sum_probs=96.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhcc---CC-C--CCCeeEEeccCCC-C-CCccceeEehhhhc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGL---DS-D--LANLKYVGGDMFE-A-ISPADAVLLKWILH 200 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~-~--~~ri~~~~~D~~~-~-~p~~D~v~~~~vlh 200 (296)
.+++|||||||.|.++..++.+.+ ..++++|. +...-+. ++ . ..++.+.+.-+.+ + ...||+|++-.||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence 467999999999999999999854 36899997 4333322 22 2 2333444333333 2 23599999999999
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCC--chhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDD--KSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS 278 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~ 278 (296)
|..++- ..|+.++..|+| ||.+++=..+.+.+.... |..+.+.+-++ -...|...+..|++++||+
T Consensus 194 Hrr~Pl--~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv-------~FiPs~~~L~~wl~r~gF~ 261 (315)
T PF08003_consen 194 HRRSPL--DHLKQLKDSLRP---GGELVLETLVIDGDENTVLVPEDRYAKMRNV-------WFIPSVAALKNWLERAGFK 261 (315)
T ss_pred ccCCHH--HHHHHHHHhhCC---CCEEEEEEeeecCCCceEEccCCcccCCCce-------EEeCCHHHHHHHHHHcCCc
Confidence 988874 789999999999 777666555555443221 11111111111 1233899999999999999
Q ss_pred eeEEEEcC
Q 022515 279 DYKIIPIL 286 (296)
Q Consensus 279 ~~~~~~~~ 286 (296)
.+++..+.
T Consensus 262 ~v~~v~~~ 269 (315)
T PF08003_consen 262 DVRCVDVS 269 (315)
T ss_pred eEEEecCc
Confidence 99987653
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.41 E-value=3.1e-12 Score=108.76 Aligned_cols=144 Identities=17% Similarity=0.146 Sum_probs=100.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-C--C-CccceeEehhhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-A--I-SPADAVLLKWIL 199 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~--~-p~~D~v~~~~vl 199 (296)
.+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ...++++...|+.+ + . ..||+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35679999999999999988875 568999999 888877764 23467888877765 2 2 259999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhh-hhhhhhhh--c---CccccCHHHHHHHHH
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLF-FDMLMMVL--L---TGTERDEKEWTKLFT 273 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~-~~~~~~~~--~---~g~~rt~~e~~~ll~ 273 (296)
++.++.. .+|+++.+.|+| ||++++...... . .. . ..... ........ . .....+.++|.++++
T Consensus 125 ~~~~~~~--~~l~~~~~~L~~---gG~l~v~~~~~~-~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (233)
T PRK05134 125 EHVPDPA--SFVRACAKLVKP---GGLVFFSTLNRN-L-KS--Y-LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLR 194 (233)
T ss_pred hccCCHH--HHHHHHHHHcCC---CcEEEEEecCCC-h-HH--H-HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHH
Confidence 9988764 789999999999 899887653211 0 00 0 00000 00000000 0 123448899999999
Q ss_pred hcCCceeEEEE
Q 022515 274 YAGFSDYKIIP 284 (296)
Q Consensus 274 ~aGf~~~~~~~ 284 (296)
++||+++....
T Consensus 195 ~~Gf~~v~~~~ 205 (233)
T PRK05134 195 QAGLEVQDITG 205 (233)
T ss_pred HCCCeEeeeee
Confidence 99999887754
No 66
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.40 E-value=9.5e-13 Score=107.67 Aligned_cols=142 Identities=20% Similarity=0.323 Sum_probs=101.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CC---CC-eeEEeccCCC--CCC-ccceeEehhhhc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DL---AN-LKYVGGDMFE--AIS-PADAVLLKWILH 200 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~---~r-i~~~~~D~~~--~~p-~~D~v~~~~vlh 200 (296)
+..+.||.|+|.|..+..|+..+ --++-.+|. +..++.|++ .. .+ .++.+.-+.+ |.+ .||+|++.|++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999999887654 347888888 888888876 22 23 3334333333 333 599999999999
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
|++|++.+++|++++++|+| +|.|+|=|.+...... .+|- ..++-.|+.+.|++++++||++++
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D~----~DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFDE----EDSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEET----TTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccCC----ccCeeecCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999 8999999988765321 1111 124567899999999999999999
Q ss_pred EEEEcCCc
Q 022515 281 KIIPILGL 288 (296)
Q Consensus 281 ~~~~~~~~ 288 (296)
+.....++
T Consensus 198 ~~~~Q~~f 205 (218)
T PF05891_consen 198 KEEKQKGF 205 (218)
T ss_dssp EEEE-TT-
T ss_pred EeccccCC
Confidence 88776554
No 67
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.39 E-value=1.4e-11 Score=103.32 Aligned_cols=133 Identities=12% Similarity=0.088 Sum_probs=101.1
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------------CCCCeeEEeccCCCC---
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------------DLANLKYVGGDMFEA--- 186 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~D~~~~--- 186 (296)
..+..+|||+|||.|..+..|+++ +.+++++|+ +..++.+.+ ...+|++..+|+++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 345679999999999999999986 889999999 888876421 246899999999983
Q ss_pred -CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCC-CCchhhhhhhhhhhhhhhcCccccC
Q 022515 187 -ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG-DDKSIETQLFFDMLMMVLLTGTERD 264 (296)
Q Consensus 187 -~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~rt 264 (296)
.+.||+|+-+.++|+++.+...+.++++.++|+| ||+++++....++... .+| ...+
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~gPp------------------~~~~ 171 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAGPP------------------FSVS 171 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCCCC------------------CCCC
Confidence 2358999999999999999888999999999999 8876665544433221 111 1238
Q ss_pred HHHHHHHHHhcCCceeEEEE
Q 022515 265 EKEWTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~~~~ 284 (296)
.+|+++++.. +|.+..+..
T Consensus 172 ~~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 172 DEEVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHHHhcC-CceEEEeee
Confidence 8999999864 266555544
No 68
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.38 E-value=1.1e-12 Score=105.54 Aligned_cols=133 Identities=14% Similarity=0.210 Sum_probs=96.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCCCC--ccceeEehhhhcc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEAIS--PADAVLLKWILHD 201 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~ 201 (296)
-....+++|+|||.|.++..|+.++ -+.+++|+ +..++.|++ ...+|+++.+|+-+..| .||+|+++-|+|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4456799999999999999999985 48999999 999999986 45789999999988544 5999999999999
Q ss_pred CCc-hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 202 WND-EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 202 ~~d-~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
+++ ++...+++++.++|+| ||.+++.... ++ . .. .-|.....+.+.++|++. |..+
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~r-d~--------~---c~-------~wgh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHAR-DA--------N---CR-------RWGHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE--HH--------H---HH-------HTT-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEec-CC--------c---cc-------ccCcccchHHHHHHHHHH-hhhe
Confidence 986 5778899999999999 8888886642 11 0 10 114444677888888886 6655
Q ss_pred EEEEc
Q 022515 281 KIIPI 285 (296)
Q Consensus 281 ~~~~~ 285 (296)
+....
T Consensus 176 ~~~~~ 180 (201)
T PF05401_consen 176 ERVEC 180 (201)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 55554
No 69
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.37 E-value=1.8e-11 Score=109.30 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=86.3
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC-ccce
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS-PADA 192 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p-~~D~ 192 (296)
.++..++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ ..-..+++.+|.++..+ .||+
T Consensus 187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3445554 23346899999999999999999999999999999 889988875 22235677888877544 5999
Q ss_pred eEehhhhccCC---chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 193 VLLKWILHDWN---DEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 193 v~~~~vlh~~~---d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
|+++-.+|+.. .....++++++.+.|+| ||.++|+-.
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 99998888632 34567899999999999 999988764
No 70
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.37 E-value=6.7e-12 Score=103.66 Aligned_cols=141 Identities=13% Similarity=0.023 Sum_probs=94.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC---CCC--ccceeEehhhhccC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE---AIS--PADAVLLKWILHDW 202 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~---~~p--~~D~v~~~~vlh~~ 202 (296)
++..+|||||||+|.++..+++.. ..+++++|+ +++++.++ ..+++++.+|+.+ +.+ .||+|++.+++||.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~--~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACV--ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHH--HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 356799999999999998887763 668899999 88888875 2457888888865 233 49999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhh-h----------hhhhhhcCccccCHHHHHHH
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFF-D----------MLMMVLLTGTERDEKEWTKL 271 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~g~~rt~~e~~~l 271 (296)
++.. .+|+++.+.+++ + ++.- +.... +......+ . .........+..+.+++.++
T Consensus 89 ~d~~--~~l~e~~r~~~~----~--ii~~---p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 89 RNPE--EILDEMLRVGRH----A--IVSF---PNFGY---WRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194)
T ss_pred cCHH--HHHHHHHHhCCe----E--EEEc---CChhH---HHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence 8754 678888776654 2 2221 11000 00000000 0 00000012235589999999
Q ss_pred HHhcCCceeEEEEcC
Q 022515 272 FTYAGFSDYKIIPIL 286 (296)
Q Consensus 272 l~~aGf~~~~~~~~~ 286 (296)
++++||+++.....+
T Consensus 155 l~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 155 CGELNLRILDRAAFD 169 (194)
T ss_pred HHHCCCEEEEEEEec
Confidence 999999998877664
No 71
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.35 E-value=7e-12 Score=95.53 Aligned_cols=101 Identities=19% Similarity=0.280 Sum_probs=79.7
Q ss_pred HHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CC-Cc
Q 022515 120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AI-SP 189 (296)
Q Consensus 120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~-p~ 189 (296)
++..+. ..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ ...+++++.+|... .. +.
T Consensus 11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 344444 45567999999999999999999999999999999 888888765 34679999898764 12 35
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
||+|++....+ ...++++++++.|+| ||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 99999966443 334889999999999 8887764
No 72
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.34 E-value=2.2e-11 Score=104.62 Aligned_cols=124 Identities=23% Similarity=0.329 Sum_probs=94.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC--ccceeEehh----
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--PADAVLLKW---- 197 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--~~D~v~~~~---- 197 (296)
...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++++.+|+.+..+ .||+|++.-
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346899999999999999999999999999999 899988865 33579999999988543 599998832
Q ss_pred --hhccCCchH------------------HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh
Q 022515 198 --ILHDWNDEE------------------CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL 257 (296)
Q Consensus 198 --vlh~~~d~~------------------~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (296)
.+|.+..+. ...+++++.+.|+| ||.+++... .
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~~------~------------------ 219 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEIG------Y------------------ 219 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEEC------c------------------
Confidence 222222111 23689999999999 888766320 0
Q ss_pred cCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 258 LTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
...+++.++++++||+.+++..-
T Consensus 220 -----~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 220 -----DQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred -----cHHHHHHHHHHhCCCCceEEEeC
Confidence 13567889999999998887664
No 73
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.34 E-value=1.3e-11 Score=104.27 Aligned_cols=142 Identities=16% Similarity=0.138 Sum_probs=100.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CC-CCeeEEeccCCC-C--C-CccceeEehhhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DL-ANLKYVGGDMFE-A--I-SPADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~-~ri~~~~~D~~~-~--~-p~~D~v~~~~vl 199 (296)
.+.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .. .++++...|+.+ + . ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999888864 46999999 888887765 12 268888888765 2 2 259999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh--h-c----CccccCHHHHHHHH
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV--L-L----TGTERDEKEWTKLF 272 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~-~----~g~~rt~~e~~~ll 272 (296)
|+.++.. .+|+++.++|+| ||.+++........ . .......-.+.. . . .....+.++|.+++
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 191 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKP---GGILFFSTINRTPK--S----YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWL 191 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCC---CcEEEEEecCCCch--H----HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHH
Confidence 9988765 789999999999 89988765421110 0 000000000000 0 0 11234788999999
Q ss_pred HhcCCceeEEEE
Q 022515 273 TYAGFSDYKIIP 284 (296)
Q Consensus 273 ~~aGf~~~~~~~ 284 (296)
+++||+++++..
T Consensus 192 ~~~G~~i~~~~~ 203 (224)
T TIGR01983 192 ESAGLRVKDVKG 203 (224)
T ss_pred HHcCCeeeeeee
Confidence 999999988764
No 74
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.33 E-value=4.1e-11 Score=104.41 Aligned_cols=136 Identities=21% Similarity=0.324 Sum_probs=99.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC--ccceeEehh--
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--PADAVLLKW-- 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--~~D~v~~~~-- 197 (296)
..+..+|||+|||+|..+..++..+|..+++++|+ +.+++.+++ ...+++++.+|++++.+ .||+|++.-
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999999 888888775 34689999999988543 599998842
Q ss_pred ----hhccCCc------------------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhh
Q 022515 198 ----ILHDWND------------------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMM 255 (296)
Q Consensus 198 ----vlh~~~d------------------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~ 255 (296)
.++.... +....+++++.+.|+| ||++++ +. ...
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~-----g~~--------------- 241 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI-----GYD--------------- 241 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE-----Cch---------------
Confidence 1111111 1235788999999999 888776 22 000
Q ss_pred hhcCccccCHHHHHHHHHhcCCceeEEEE-cCCcceEEEEe
Q 022515 256 VLLTGTERDEKEWTKLFTYAGFSDYKIIP-ILGLRSLIEVY 295 (296)
Q Consensus 256 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~ 295 (296)
..+++.+++++.||+.++++. ..+...++.++
T Consensus 242 --------~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 242 --------QGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred --------HHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 235688999999999777643 44555666654
No 75
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.32 E-value=4.8e-11 Score=102.46 Aligned_cols=125 Identities=20% Similarity=0.269 Sum_probs=92.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCccceeEehhhhcc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISPADAVLLKWILHD 201 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~ 201 (296)
.++.+|||||||+|.+++.+++..+ .+++++|+ |.+++.|++ ..+++.+..+|. .||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence 4678999999999999988776543 36999999 899988875 224444444432 59999875322
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK 281 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 281 (296)
+....+++++.+.|+| ||++++...... ..+++.+.+++.||++.+
T Consensus 190 ---~~~~~l~~~~~~~Lkp---gG~lilsgi~~~----------------------------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 ---NPLLELAPDLARLLKP---GGRLILSGILEE----------------------------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ---HHHHHHHHHHHHhcCC---CcEEEEEECcHh----------------------------hHHHHHHHHHHCCCEEEE
Confidence 2345789999999999 899888653210 356788899999999999
Q ss_pred EEEcCCcceEEEEe
Q 022515 282 IIPILGLRSLIEVY 295 (296)
Q Consensus 282 ~~~~~~~~~vi~~~ 295 (296)
+.......+++..+
T Consensus 236 ~~~~~~W~~~~~~~ 249 (250)
T PRK00517 236 VLERGEWVALVGKK 249 (250)
T ss_pred EEEeCCEEEEEEEe
Confidence 88877777766544
No 76
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.31 E-value=9.8e-12 Score=100.45 Aligned_cols=99 Identities=22% Similarity=0.375 Sum_probs=80.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC--ccceeEehhhhcc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--PADAVLLKWILHD 201 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~ 201 (296)
...+|||+|||+|.++..+++++|..+++++|+ +.+++.+++ ..+.++++..|.++..+ .||+|+++=-+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 567999999999999999999999999999999 899988876 22339999999999554 5999999877765
Q ss_pred CCc---hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 202 WND---EECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 202 ~~d---~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
-.+ +-..++++.+.+.|+| ||+++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 443 2356899999999999 99997654
No 77
>PTZ00146 fibrillarin; Provisional
Probab=99.30 E-value=1.5e-10 Score=99.74 Aligned_cols=132 Identities=11% Similarity=0.124 Sum_probs=91.4
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hh----HhhccCCCCCCeeEEeccCCCC------CCccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PH----VVNGLDSDLANLKYVGGDMFEA------ISPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~ri~~~~~D~~~~------~p~~D~v~~ 195 (296)
+.+..+|||+|||+|.++.++++.. +.-+++.+|+ +. +++.++ ...+|.++.+|...+ .+.+|+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 5677899999999999999999986 3458999998 65 445554 447789999998653 235899988
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA 275 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a 275 (296)
... .++ +...++.++++.||| ||+++|......-+...++ ...+ . +|. ++|+++
T Consensus 209 Dva---~pd-q~~il~~na~r~LKp---GG~~vI~ika~~id~g~~p----e~~f-------------~-~ev-~~L~~~ 262 (293)
T PTZ00146 209 DVA---QPD-QARIVALNAQYFLKN---GGHFIISIKANCIDSTAKP----EVVF-------------A-SEV-QKLKKE 262 (293)
T ss_pred eCC---Ccc-hHHHHHHHHHHhccC---CCEEEEEEeccccccCCCH----HHHH-------------H-HHH-HHHHHc
Confidence 763 133 344566789999999 9999884222111111100 0000 2 344 889999
Q ss_pred CCceeEEEEcC
Q 022515 276 GFSDYKIIPIL 286 (296)
Q Consensus 276 Gf~~~~~~~~~ 286 (296)
||+.++...+.
T Consensus 263 GF~~~e~v~L~ 273 (293)
T PTZ00146 263 GLKPKEQLTLE 273 (293)
T ss_pred CCceEEEEecC
Confidence 99988888775
No 78
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.27 E-value=1.3e-11 Score=101.53 Aligned_cols=146 Identities=21% Similarity=0.318 Sum_probs=110.5
Q ss_pred CEEEEecCCchHHHHHHHHHCCC--CeEEeccc-hhHhhccCC----CCCCeeEEeccCCCC-----CC--ccceeEehh
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPK--LECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEA-----IS--PADAVLLKW 197 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~-----~p--~~D~v~~~~ 197 (296)
.+||+||||.|....-+++..|+ +++...|- |..++..++ ...|+.-...|+..+ .+ ..|++++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999999888 99999999 888887765 456666666677652 11 389999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCcc---ccCHHHHHHHHHh
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGT---ERDEKEWTKLFTY 274 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~rt~~e~~~ll~~ 274 (296)
+|--.+.++....++++++.||| ||.|++-|....+-..- .+ .....++-+..+...|. ..+.+++++++.+
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~Dlaql-RF-~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ 227 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQL-RF-KKGQCISENFYVRGDGTRAYFFTEEELDELFTK 227 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHH-hc-cCCceeecceEEccCCceeeeccHHHHHHHHHh
Confidence 99999999999999999999999 99999999765542211 00 01123333333333333 3499999999999
Q ss_pred cCCceeEE
Q 022515 275 AGFSDYKI 282 (296)
Q Consensus 275 aGf~~~~~ 282 (296)
|||..++.
T Consensus 228 agf~~~~~ 235 (264)
T KOG2361|consen 228 AGFEEVQL 235 (264)
T ss_pred cccchhcc
Confidence 99987664
No 79
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.27 E-value=2.5e-11 Score=97.06 Aligned_cols=128 Identities=18% Similarity=0.198 Sum_probs=88.4
Q ss_pred Eeccc-hhHhhccCC--------CCCCeeEEeccCCC-CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCc
Q 022515 158 TCFDL-PHVVNGLDS--------DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKG 225 (296)
Q Consensus 158 ~~~D~-~~~~~~a~~--------~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG 225 (296)
+++|+ ++|++.|++ ...+++++.+|..+ +.+ .||+|++..++|++++.. ++|++++++||| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCc---Ce
Confidence 47899 999998853 13579999999988 665 499999999999998754 889999999999 99
Q ss_pred EEEEEeeeeCCCCCCCchhhhhhhhhhhhhh----hcC------------ccccCHHHHHHHHHhcCCceeEEEEcC-Cc
Q 022515 226 KVIIIDMIRENKKGDDKSIETQLFFDMLMMV----LLT------------GTERDEKEWTKLFTYAGFSDYKIIPIL-GL 288 (296)
Q Consensus 226 ~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~ 288 (296)
+++|.|...++.... .....++-..... ..+ ....+.+++.++|+++||+.++.+... +.
T Consensus 76 ~l~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 76 RVSILDFNKSNQSVT---TFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred EEEEEECCCCChHHH---HHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 999999865432110 0000000000000 000 123388999999999999998887764 33
Q ss_pred ceEEE
Q 022515 289 RSLIE 293 (296)
Q Consensus 289 ~~vi~ 293 (296)
..+..
T Consensus 153 ~~~~~ 157 (160)
T PLN02232 153 MGNLV 157 (160)
T ss_pred hHeeE
Confidence 44443
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=99.26 E-value=2e-10 Score=94.19 Aligned_cols=135 Identities=18% Similarity=0.230 Sum_probs=96.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCC-eeEEeccCCCCCC--ccceeEehhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLAN-LKYVGGDMFEAIS--PADAVLLKWI 198 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~r-i~~~~~D~~~~~p--~~D~v~~~~v 198 (296)
.++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..++ +.++.+|+.++.+ .||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45678999999999999999988 689999999 889888765 2233 8999999988544 4999998654
Q ss_pred hccCC-------------------chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcC
Q 022515 199 LHDWN-------------------DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLT 259 (296)
Q Consensus 199 lh~~~-------------------d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (296)
++... ......+++++.+.|+| ||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~~------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSSL------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEccc-------------------------
Confidence 32211 11235689999999999 89887754210
Q ss_pred ccccCHHHHHHHHHhcCCceeEEEEcC---CcceEEEEeC
Q 022515 260 GTERDEKEWTKLFTYAGFSDYKIIPIL---GLRSLIEVYP 296 (296)
Q Consensus 260 g~~rt~~e~~~ll~~aGf~~~~~~~~~---~~~~vi~~~~ 296 (296)
...+++.++++++||++..+.... ....+++.+|
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 034567889999999987765542 2234555543
No 81
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.26 E-value=1.4e-11 Score=102.40 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=78.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccC-CC-C--CC--ccceeEehh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDM-FE-A--IS--PADAVLLKW 197 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~-~~-~--~p--~~D~v~~~~ 197 (296)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|+ .. + ++ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999999 999988865 236899999998 43 3 33 499999865
Q ss_pred hhccCC------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 198 ILHDWN------DEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 198 vlh~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
..+... ......+|++++++|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 442111 11135789999999999 99998864
No 82
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.26 E-value=1.4e-10 Score=92.70 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=83.3
Q ss_pred HHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CCCccc
Q 022515 121 IHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AISPAD 191 (296)
Q Consensus 121 ~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~p~~D 191 (296)
+..+. ..++.+++|||||||..+++++...|..+++.+|. ++.++..++ ..++++++.||.-+ +.+.+|
T Consensus 27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 44444 67889999999999999999999999999999998 777766554 68999999999876 344699
Q ss_pred eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.|++...- ....+|+.+...|+| ||+|++.-.
T Consensus 105 aiFIGGg~------~i~~ile~~~~~l~~---ggrlV~nai 136 (187)
T COG2242 105 AIFIGGGG------NIEEILEAAWERLKP---GGRLVANAI 136 (187)
T ss_pred EEEECCCC------CHHHHHHHHHHHcCc---CCeEEEEee
Confidence 99997652 345789999999999 999887553
No 83
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.26 E-value=7.8e-11 Score=94.71 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=97.4
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC---CC--ccceeEehhhhcc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA---IS--PADAVLLKWILHD 201 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~---~p--~~D~v~~~~vlh~ 201 (296)
.+++.+|||+|||.|.++..|.+. .+.++.++|+ ++-+..+. ...++++.+|+.+. +| .||.|+++.+|.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv--~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV--ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH--HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 357799999999999999888885 5899999999 77666653 56688999999873 45 4999999999998
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCC---------CCCchhh-h-hhhhhhhhhhhcCccccCHHHHHH
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKK---------GDDKSIE-T-QLFFDMLMMVLLTGTERDEKEWTK 270 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~---------~~~~~~~-~-~~~~~~~~~~~~~g~~rt~~e~~~ 270 (296)
...++ ++|+++.|+-+ +.+|.=+-..... .. |.+. . -.|++ ..+-+..|..++++
T Consensus 88 ~~~P~--~vL~EmlRVgr------~~IVsFPNFg~W~~R~~l~~~Grm-Pvt~~lPy~WYd-----TPNih~~Ti~DFe~ 153 (193)
T PF07021_consen 88 VRRPD--EVLEEMLRVGR------RAIVSFPNFGHWRNRLQLLLRGRM-PVTKALPYEWYD-----TPNIHLCTIKDFED 153 (193)
T ss_pred HhHHH--HHHHHHHHhcC------eEEEEecChHHHHHHHHHHhcCCC-CCCCCCCCcccC-----CCCcccccHHHHHH
Confidence 87766 67888866643 3333221110000 00 0000 0 00111 01223449999999
Q ss_pred HHHhcCCceeEEEEcCC
Q 022515 271 LFTYAGFSDYKIIPILG 287 (296)
Q Consensus 271 ll~~aGf~~~~~~~~~~ 287 (296)
+.++.|+++.+...+.+
T Consensus 154 lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 154 LCRELGIRIEERVFLDG 170 (193)
T ss_pred HHHHCCCEEEEEEEEcC
Confidence 99999999998877653
No 84
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.25 E-value=2.8e-10 Score=95.15 Aligned_cols=103 Identities=10% Similarity=0.039 Sum_probs=87.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------------CCCCeeEEeccCCC-CC--
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------------DLANLKYVGGDMFE-AI-- 187 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~D~~~-~~-- 187 (296)
.++.+||+.|||.|.-+..|++. +.+++++|+ +..++.+.+ ...+|++.++|+++ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 45689999999999999999997 789999999 777776421 35689999999998 42
Q ss_pred ---CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 188 ---SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 188 ---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
..||+|+=..+++.++.+...+..+++.+.|+| ||+++++....+.
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~~ 168 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHDK 168 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecCC
Confidence 259999999999999999989999999999999 9998888764443
No 85
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.25 E-value=1.1e-10 Score=96.73 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=75.5
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C-CccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I-SPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~-p~~D~v~~ 195 (296)
..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++ ..++++++.+|+.+ + . +.||+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5677899999999999999998764 6679999999 999987765 25789999999876 2 2 35999998
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
.. .......+++.+.+.|+| ||++++
T Consensus 118 ~~-----~~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 118 GG-----GSEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CC-----CcccHHHHHHHHHHHcCC---CcEEEE
Confidence 43 223345789999999999 898875
No 86
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.24 E-value=2.5e-10 Score=99.83 Aligned_cols=132 Identities=16% Similarity=0.264 Sum_probs=95.7
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--ccceeEeh------
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--PADAVLLK------ 196 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--~~D~v~~~------ 196 (296)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.|++ ..++++++.+|++++.+ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 889988776 34579999999998654 59999884
Q ss_pred -------hhhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcC
Q 022515 197 -------WILHDWND----------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLT 259 (296)
Q Consensus 197 -------~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (296)
.++++-|. +....+++++.+.|+| ||.+ ++|....
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l-~~e~g~~------------------------ 247 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFL-VCEIGNW------------------------ 247 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEE-EEEECcc------------------------
Confidence 23333221 1345789999999999 7765 4553210
Q ss_pred ccccCHHHHHHHHH-hcCCceeEEEE-cCCcceEEEEe
Q 022515 260 GTERDEKEWTKLFT-YAGFSDYKIIP-ILGLRSLIEVY 295 (296)
Q Consensus 260 g~~rt~~e~~~ll~-~aGf~~~~~~~-~~~~~~vi~~~ 295 (296)
..+++.+++. +.||..+++++ ..+...++.++
T Consensus 248 ----q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 248 ----QQKSLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred ----HHHHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 2345666777 46887766654 34555555443
No 87
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.24 E-value=1.9e-10 Score=97.55 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=115.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCC--CeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC------CCcccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPK--LECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA------ISPADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~------~p~~D~v 193 (296)
..+-+||||.||+|.+....+..+|. .++.+.|. |.-++..++ +.+-++|+.+|.|+. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35679999999999999999999997 78999998 777777655 556669999999982 2458999
Q ss_pred EehhhhccCCchHHH-HHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCc-----cccCHHH
Q 022515 194 LLKWILHDWNDEECV-KILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTG-----TERDEKE 267 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~-~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~rt~~e 267 (296)
+.+.+...|+|.+.+ ..|+.+.+++.| ||.++-...-+++... +.......+-+| +.||..|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle---------~IAr~LtsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLE---------MIARVLTSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchH---------HHHHHHhcccCCCceEEEecCHHH
Confidence 999999999998755 469999999999 8887766543333211 111111111122 4679999
Q ss_pred HHHHHHhcCCceeEEEE-cCCcceEEEEeC
Q 022515 268 WTKLFTYAGFSDYKIIP-ILGLRSLIEVYP 296 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 296 (296)
+.+|.++|||+.+.... --+.++|-.|++
T Consensus 282 mD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 282 MDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 99999999999665433 235567776654
No 88
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.22 E-value=3.5e-10 Score=102.02 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=96.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCC-CC---ccceeEehhhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEA-IS---PADAVLLKWIL 199 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~-~p---~~D~v~~~~vl 199 (296)
.+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+++++.+|+++. .+ .||+|+++=--
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 3456999999999999999999999999999999 999998876 345899999999873 32 49999983211
Q ss_pred c---------------------cCCc--hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh
Q 022515 200 H---------------------DWND--EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV 256 (296)
Q Consensus 200 h---------------------~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (296)
. ...+ +-..++++.+.+.|+| ||.++ +|.-..
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~li-lEiG~~--------------------- 384 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLL-LEHGFD--------------------- 384 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEE-EEECcc---------------------
Confidence 0 0000 1123677777888998 77654 443110
Q ss_pred hcCccccCHHHHHHHHHhcCCceeEEEE-cCCcceEEEEe
Q 022515 257 LLTGTERDEKEWTKLFTYAGFSDYKIIP-ILGLRSLIEVY 295 (296)
Q Consensus 257 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~ 295 (296)
..+++.+++++.||+.+++.+ ..+...++.++
T Consensus 385 -------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 385 -------QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred -------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 345788899999999877655 45555666554
No 89
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=5e-10 Score=96.15 Aligned_cols=111 Identities=15% Similarity=0.255 Sum_probs=88.4
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC-c
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS-P 189 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p-~ 189 (296)
..-+++.++ .....+|||+|||.|.+++.+++.+|..+++.+|. ...++.+++ ..++..+...|.+++.. .
T Consensus 147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 345677777 44455999999999999999999999999999999 778888876 22333567778888655 5
Q ss_pred cceeEehhhhccC---CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 190 ADAVLLKWILHDW---NDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 190 ~D~v~~~~vlh~~---~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
||+|+++=-+|.= .+.-+.++++.+.+.|++ ||.|.|+-.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 9999998777742 233445899999999999 999998875
No 90
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=7.1e-11 Score=98.36 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=77.4
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS-- 188 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p-- 188 (296)
.+++.+. ..++.+|||||||+|..+..+++..+ ..+++++|+ +++++.+++ ..++++++.+|..+..+
T Consensus 63 ~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 63 MMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 3444444 55678999999999999999998764 568999999 898887765 23579999999987332
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
.||+|++...+++++ +++.+.|+| ||++++.
T Consensus 141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 599999998887555 356778999 9998774
No 91
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.22 E-value=2.4e-10 Score=100.77 Aligned_cols=95 Identities=21% Similarity=0.337 Sum_probs=76.0
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--ccceeEehh-----
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--PADAVLLKW----- 197 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--~~D~v~~~~----- 197 (296)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+++..+ .||+|+++=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 999988876 34689999999987544 499999851
Q ss_pred --------hhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 198 --------ILHDWND----------EECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 198 --------vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
.+++.|. +....+++++.+.|+| ||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1122221 2235889999999999 887665
No 92
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.20 E-value=3.4e-10 Score=98.88 Aligned_cols=122 Identities=17% Similarity=0.290 Sum_probs=90.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--ccceeEeh----
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--PADAVLLK---- 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--~~D~v~~~---- 196 (296)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+++..+ .||+|+++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999999999999999999999999 899988876 34689999999987554 49999984
Q ss_pred ---------hhhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh
Q 022515 197 ---------WILHDWND----------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL 257 (296)
Q Consensus 197 ---------~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (296)
..+++.|. +....+++++.+.|+| ||+++ +|...
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~-~e~g~----------------------- 253 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLV-VEVGN----------------------- 253 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEE-EEECc-----------------------
Confidence 11122221 1235789999999999 78765 44310
Q ss_pred cCccccCHHHHHHHHHhcCCceeEEEE
Q 022515 258 LTGTERDEKEWTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~ 284 (296)
+.+++.+++.++||.-.....
T Consensus 254 ------~~~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 254 ------SMEALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred ------CHHHHHHHHHhCCCceeeecC
Confidence 234667778888887654433
No 93
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.19 E-value=5.4e-11 Score=98.22 Aligned_cols=98 Identities=19% Similarity=0.289 Sum_probs=77.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C---CC--ccceeEehh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A---IS--PADAVLLKW 197 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~---~p--~~D~v~~~~ 197 (296)
...++||||||+|.++..+++++|+.+++++|+ +.+++.|++ ...+++++.+|+.+ . .+ .+|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 888888764 34589999999875 2 33 378888765
Q ss_pred hhccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 198 ILHDWNDEE-------CVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 198 vlh~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
..+ |+... ...+++.++++|+| ||.+++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 432 33221 14689999999999 99987765
No 94
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.18 E-value=3e-10 Score=95.51 Aligned_cols=126 Identities=11% Similarity=0.159 Sum_probs=99.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-C--CC--ccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-A--IS--PADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~--~p--~~D~v~~ 195 (296)
.....+|||+|||+|..+..++++++..+++++++ +.+.+.|++ +.+||+++.+|+.+ . .+ .||+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34478999999999999999999999999999999 899998877 78999999999987 2 22 4899998
Q ss_pred hhhhccCCc----------------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcC
Q 022515 196 KWILHDWND----------------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLT 259 (296)
Q Consensus 196 ~~vlh~~~d----------------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (296)
+=-.+.-++ -....+++.+.+.||| ||++.++-.. .
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r~-----------e-------------- 173 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHRP-----------E-------------- 173 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEecH-----------H--------------
Confidence 533322221 2346789999999999 9998887521 0
Q ss_pred ccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 260 GTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 260 g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
...|+.+++++.+|...++..+
T Consensus 174 ----rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 ----RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred ----HHHHHHHHHHhcCCCceEEEEe
Confidence 3457888999999988777665
No 95
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.17 E-value=2.8e-10 Score=95.23 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=100.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------------CCCCeeEEeccCCC-CC-
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------------DLANLKYVGGDMFE-AI- 187 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~D~~~-~~- 187 (296)
..+..+||..|||.|.-+..|+++ +.+++++|+ +..++.+.+ ..++|++.++|||+ +.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456679999999999999999987 789999999 888876511 25689999999999 32
Q ss_pred --CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCC-CCchhhhhhhhhhhhhhhcCccccC
Q 022515 188 --SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG-DDKSIETQLFFDMLMMVLLTGTERD 264 (296)
Q Consensus 188 --p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~rt 264 (296)
+.||+|+=..+|+-++.+...+..+++.+.|+| ||+++++....+.... .||+ ..+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf------------------~v~ 171 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPF------------------SVT 171 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS----------------------
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCC------------------CCC
Confidence 249999999999999999999999999999999 8996555544433221 2222 127
Q ss_pred HHHHHHHHHhcCCceeEEEE
Q 022515 265 EKEWTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~~~~ 284 (296)
.+|+++++. .+|++..+..
T Consensus 172 ~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 172 EEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHHhc-CCcEEEEEec
Confidence 899999999 7888776654
No 96
>PHA03411 putative methyltransferase; Provisional
Probab=99.17 E-value=3.1e-10 Score=96.84 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=92.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccceeEehhhhccCCchH
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADAVLLKWILHDWNDEE 206 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~~d~~ 206 (296)
...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++...+++++.+|+.+ ... .||+|++.--.++.+.++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 346999999999999999999887789999999 99999887644689999999998 323 599999977777654332
Q ss_pred H------------------HHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515 207 C------------------VKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW 268 (296)
Q Consensus 207 ~------------------~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~ 268 (296)
. .+.++.+...|+| +|.+.++ .. . . | ++ ....+.+|+
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~--ys-s---~-~------~y---------~~sl~~~~y 198 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA--YS-G---R-P------YY---------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE--Ee-c---c-c------cc---------cccCCHHHH
Confidence 1 3566777788888 7765555 11 1 0 0 11 111278999
Q ss_pred HHHHHhcCCc
Q 022515 269 TKLFTYAGFS 278 (296)
Q Consensus 269 ~~ll~~aGf~ 278 (296)
+.+++++||.
T Consensus 199 ~~~l~~~g~~ 208 (279)
T PHA03411 199 LKWSKQTGLV 208 (279)
T ss_pred HHHHHhcCcE
Confidence 9999999986
No 97
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.16 E-value=2.4e-10 Score=95.66 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=78.7
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI--- 187 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~--- 187 (296)
..++..++ ..++.+|||||||+|.++..+++.. ++.+++++|+ +++++.+++ ..++++++.+|.....
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 44555555 6778899999999999999888875 4579999999 999988876 3468999999988732
Q ss_pred CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 188 SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 188 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
..||+|++....++.+ +.+.+.|+| ||++++..
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~~ 176 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIPV 176 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhCC---CcEEEEEE
Confidence 2599999987665433 356667999 99988853
No 98
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.14 E-value=8.4e-10 Score=103.68 Aligned_cols=133 Identities=17% Similarity=0.280 Sum_probs=96.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--ccceeEehh---
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--PADAVLLKW--- 197 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--~~D~v~~~~--- 197 (296)
+..+|||+|||+|.+++.++..+|+.+++++|+ +.+++.|++ ..++++++.+|+++..+ .||+|+++-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 346899999999999999999999999999999 889988876 35689999999987543 599999831
Q ss_pred -----------hhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh
Q 022515 198 -----------ILHDWND----------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV 256 (296)
Q Consensus 198 -----------vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (296)
++.+.|. +....+++++.+.|+| ||.+++ |.-. .
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~-----~---------------- 272 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF-----K---------------- 272 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC-----c----------------
Confidence 1111111 1224678889999999 887654 4210 0
Q ss_pred hcCccccCHHHHHHHHHhcCCceeEEEE-cCCcceEEEE
Q 022515 257 LLTGTERDEKEWTKLFTYAGFSDYKIIP-ILGLRSLIEV 294 (296)
Q Consensus 257 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~ 294 (296)
..+++.+++.+.||+.+++.. ..+...++.+
T Consensus 273 -------q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 273 -------QEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred -------hHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 345678888999998777655 4555555544
No 99
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.14 E-value=2.5e-10 Score=89.91 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=94.1
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC-C-C-ccceeEehhhhcc
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA-I-S-PADAVLLKWILHD 201 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~-~-p-~~D~v~~~~vlh~ 201 (296)
.+|||+|||.|+++..|++.-=..+.+++|. +..++.|+. ..+.|+|...|+.+| + + +||+|+=...+.-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 3999999999999999998743345889998 888777654 566799999999994 2 3 4888876554432
Q ss_pred ------CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515 202 ------WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA 275 (296)
Q Consensus 202 ------~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a 275 (296)
-++......+..+.+.|+| ||+++|...- +|.+|+.+.++.-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN-----------------------------~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCN-----------------------------FTKDELVEEFENF 196 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCC---CcEEEEEecC-----------------------------ccHHHHHHHHhcC
Confidence 2233334568888899999 8888876531 1889999999999
Q ss_pred CCceeEEEEcCC
Q 022515 276 GFSDYKIIPILG 287 (296)
Q Consensus 276 Gf~~~~~~~~~~ 287 (296)
||.....+|.+.
T Consensus 197 ~f~~~~tvp~pt 208 (227)
T KOG1271|consen 197 NFEYLSTVPTPT 208 (227)
T ss_pred CeEEEEeeccce
Confidence 999988888763
No 100
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.14 E-value=1.5e-10 Score=100.70 Aligned_cols=90 Identities=17% Similarity=0.296 Sum_probs=73.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCC---CeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPK---LECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDW 202 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~ 202 (296)
+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.|++...++++..+|..+ +++ .||+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 4578999999999999999998874 37899999 89999887655678999999887 655 4999997543
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+ ..+++++++|+| ||+++++.
T Consensus 161 ~-----~~~~e~~rvLkp---gG~li~~~ 181 (272)
T PRK11088 161 P-----CKAEELARVVKP---GGIVITVT 181 (272)
T ss_pred C-----CCHHHHHhhccC---CCEEEEEe
Confidence 1 236788999999 99998875
No 101
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.13 E-value=3e-10 Score=95.35 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=77.4
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---C
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---S 188 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---p 188 (296)
.+++.+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +++++.|++ ..++++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 4445555 66788999999999999999999864 467999999 999988875 3468999999998732 2
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
.||+|++....++ +.+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~--------~~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPK--------IPEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCccc--------ccHHHHHhcCc---CcEEEEE
Confidence 5999998765543 34457788999 9998874
No 102
>PRK04457 spermidine synthase; Provisional
Probab=99.12 E-value=1.7e-10 Score=99.46 Aligned_cols=98 Identities=19% Similarity=0.321 Sum_probs=78.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC---CCC-ccceeEehh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE---AIS-PADAVLLKW 197 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~---~~p-~~D~v~~~~ 197 (296)
+++.+|||||||+|.++..+++.+|+.+++++|+ |++++.|++ ..+|++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999999 999998876 24789999999865 233 599999853
Q ss_pred hhcc--CCch-HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 198 ILHD--WNDE-ECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 198 vlh~--~~d~-~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
.+. .+.. ...++++++++.|+| ||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 221 1211 125899999999999 8888774
No 103
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.12 E-value=7.2e-10 Score=97.09 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=86.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC-CccceeEehhhhc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI-SPADAVLLKWILH 200 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~-p~~D~v~~~~vlh 200 (296)
.++.+|||||||+|.++..+++. +..+++++|+ |.+++.+++ ..+++.+..+|..... .+||+|+++...+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 35689999999999999887764 4568999999 888888875 3456777777644322 3599999865432
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
....+++++.+.|+| ||++++...... ..+++.+.+++. |+.+
T Consensus 237 -----~l~~ll~~~~~~Lkp---gG~li~sgi~~~----------------------------~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKP---GGWLILSGILET----------------------------QAQSVCDAYEQG-FTVV 279 (288)
T ss_pred -----HHHHHHHHHHHHcCC---CcEEEEEeCcHh----------------------------HHHHHHHHHHcc-Ccee
Confidence 345789999999999 899887653210 345666777765 8877
Q ss_pred EEEEcC
Q 022515 281 KIIPIL 286 (296)
Q Consensus 281 ~~~~~~ 286 (296)
++....
T Consensus 280 ~~~~~~ 285 (288)
T TIGR00406 280 EIRQRE 285 (288)
T ss_pred eEeccC
Confidence 765543
No 104
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.11 E-value=6.6e-10 Score=91.93 Aligned_cols=102 Identities=21% Similarity=0.304 Sum_probs=78.6
Q ss_pred HHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CC-Cc
Q 022515 120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AI-SP 189 (296)
Q Consensus 120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~-p~ 189 (296)
++..+. ..++.+|||+|||+|.++..+++..|+.+++++|+ |.+++.+++ ..++++++.+|..+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 444444 55778999999999999999998888999999999 999988765 23679999999865 22 23
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+|.+++.. ......+++++.+.|+| ||++++...
T Consensus 110 ~d~v~~~~------~~~~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG------GRPIKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred CCEEEEEC------CcCHHHHHHHHHHhcCC---CeEEEEEee
Confidence 67665421 22345789999999999 899888764
No 105
>PRK14967 putative methyltransferase; Provisional
Probab=99.10 E-value=2.3e-09 Score=90.55 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=74.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC--ccceeEehhhhc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS--PADAVLLKWILH 200 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh 200 (296)
..+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ...+++++.+|+.+..+ .||+|++.--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455679999999999999998876 3458999999 888887665 23468899999887433 599999863211
Q ss_pred cCCc-------------------hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 201 DWND-------------------EECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 201 ~~~d-------------------~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
.-+. .....+++++.+.|+| ||+++++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~ 161 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSE 161 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEec
Confidence 1100 1134688999999999 9998876543
No 106
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.06 E-value=7.6e-10 Score=80.57 Aligned_cols=93 Identities=23% Similarity=0.329 Sum_probs=77.2
Q ss_pred EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC----CccceeEehhhhccC
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI----SPADAVLLKWILHDW 202 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~----p~~D~v~~~~vlh~~ 202 (296)
+|+|+|||.|.++..+++ .+..+++++|+ +..+..+++ ...++++..+|+.+.. +++|++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67889999999 777776652 5678999999998832 259999999999875
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
.+....+++++.+.++| ||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 44567899999999999 8888765
No 107
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.06 E-value=4e-10 Score=85.01 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=76.4
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-C--CC--ccceeEehhhh
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-A--IS--PADAVLLKWIL 199 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~--~p--~~D~v~~~~vl 199 (296)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. ..+|++++.+|+.+ . .+ .||+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 988888776 45789999999987 3 33 59999997655
Q ss_pred ccCC------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 200 HDWN------DEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 200 h~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+... .+....+++++.+.|+| ||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 5332 11346889999999999 88887754
No 108
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.06 E-value=1.1e-09 Score=98.25 Aligned_cols=100 Identities=14% Similarity=0.240 Sum_probs=78.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CCC--ccceeEehh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AIS--PADAVLLKW 197 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~p--~~D~v~~~~ 197 (296)
.....+||||||+|.++..+++++|+..++++|+ +.++..+.+ ...++.++.+|... .++ .+|.|++..
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3456899999999999999999999999999999 888877654 35679999999753 344 489998754
Q ss_pred hhccCCchH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 198 ILHDWNDEE-----CVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 198 vlh~~~d~~-----~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.. .|+... ...+|+.++++|+| ||.+.+...
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD 236 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTD 236 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEEE
Confidence 32 243222 14789999999999 999888654
No 109
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.05 E-value=2.2e-09 Score=89.51 Aligned_cols=96 Identities=14% Similarity=0.243 Sum_probs=73.6
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCCCCCCeeEEeccCCCC---------CC--ccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEA---------IS--PADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~---------~p--~~D~v~~ 195 (296)
++++.+|||||||+|.++..+++.. +..+++++|+.++. ...+++++.+|+.+. .+ .+|+|++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 4567899999999999999999986 45799999994432 234589999999872 22 4999999
Q ss_pred hhhhccCCchH---------HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 196 KWILHDWNDEE---------CVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 196 ~~vlh~~~d~~---------~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
....|....+. ...+|+.+.+.|+| ||.+++..
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~ 165 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKV 165 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEE
Confidence 77665543321 24689999999999 99988865
No 110
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=8.3e-10 Score=90.90 Aligned_cols=153 Identities=14% Similarity=0.237 Sum_probs=97.3
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------------C------------
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------------D------------ 172 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~------------ 172 (296)
+..++.++..+-.+..+|||||.+|.++.++++.|....+.++|+ +..|+.|++ .
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 334444443355678999999999999999999998889999999 888888765 0
Q ss_pred ----------------CCCeeE-------EeccCCC-CCCccceeEeh----hhhccCCchHHHHHHHHHHHhcccCCCC
Q 022515 173 ----------------LANLKY-------VGGDMFE-AISPADAVLLK----WILHDWNDEECVKILKKCKEAITSDGKK 224 (296)
Q Consensus 173 ----------------~~ri~~-------~~~D~~~-~~p~~D~v~~~----~vlh~~~d~~~~~iL~~~~~aL~p~~~g 224 (296)
.+++.| ..-||.+ ..+.||+|++- ||==+|.|+...++|+++++.|.| |
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g 202 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G 202 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence 012222 2334444 34579999874 333458899999999999999999 5
Q ss_pred cEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc--CCcee
Q 022515 225 GKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA--GFSDY 280 (296)
Q Consensus 225 G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a--Gf~~~ 280 (296)
| ++|+|+ ..+. .+...+....... ...-.-...++.+..++.+. ||+.+
T Consensus 203 G-iLvvEP----QpWk-sY~kaar~~e~~~-~ny~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 203 G-ILVVEP----QPWK-SYKKAARRSEKLA-ANYFKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred c-EEEEcC----CchH-HHHHHHHHHHHhh-cCccceecCHHHHHhhhhhhhhheeee
Confidence 5 556663 2111 0111111110000 00112234789999999988 55543
No 111
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.02 E-value=3.4e-09 Score=94.67 Aligned_cols=121 Identities=16% Similarity=0.079 Sum_probs=88.4
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--PADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~~D~v~~~~v 198 (296)
.+++.+|||+|||+|.++++.+.. +.+++++|+ +.++..+++ ....+.+..+|+.+ +.+ .+|+|++.--
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 567789999999999999886654 678999999 889887664 22348899999988 543 4999998421
Q ss_pred h-------ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHH
Q 022515 199 L-------HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKL 271 (296)
Q Consensus 199 l-------h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 271 (296)
. .+...+-..++|+.+++.|+| ||++++.-.. ..+|.++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~~-------------------------------~~~~~~~ 303 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVPT-------------------------------RIDLESL 303 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEcC-------------------------------CCCHHHH
Confidence 1 111112246899999999999 9998876421 1135577
Q ss_pred HHhcCCceeEEEEc
Q 022515 272 FTYAGFSDYKIIPI 285 (296)
Q Consensus 272 l~~aGf~~~~~~~~ 285 (296)
++++|| ++..+..
T Consensus 304 ~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 304 AEDAFR-VVKRFEV 316 (329)
T ss_pred HhhcCc-chheeee
Confidence 899999 8776665
No 112
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.02 E-value=3.8e-09 Score=92.02 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=88.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCCccceeEehhhhc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AISPADAVLLKWILH 200 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh 200 (296)
.++.+|||||||||-+++.-++.. ..+++++|+ |..++.|++ ..+++.+. ...+ ....||+|+.+-.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~-- 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANIL-- 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES---
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCC--
Confidence 466799999999999999877763 347999999 888888776 45677653 1111 1246999987432
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
.+-...++..+.+.|+| ||++++.-. ..+ ..+++.+.+++ ||+..
T Consensus 235 ---~~vL~~l~~~~~~~l~~---~G~lIlSGI-l~~---------------------------~~~~v~~a~~~-g~~~~ 279 (295)
T PF06325_consen 235 ---ADVLLELAPDIASLLKP---GGYLILSGI-LEE---------------------------QEDEVIEAYKQ-GFELV 279 (295)
T ss_dssp ---HHHHHHHHHHCHHHEEE---EEEEEEEEE-EGG---------------------------GHHHHHHHHHT-TEEEE
T ss_pred ---HHHHHHHHHHHHHhhCC---CCEEEEccc-cHH---------------------------HHHHHHHHHHC-CCEEE
Confidence 23456788899999999 777666443 321 34567778877 99999
Q ss_pred EEEEcCCcceEEEEe
Q 022515 281 KIIPILGLRSLIEVY 295 (296)
Q Consensus 281 ~~~~~~~~~~vi~~~ 295 (296)
+.....+..+++.-+
T Consensus 280 ~~~~~~~W~~l~~~K 294 (295)
T PF06325_consen 280 EEREEGEWVALVFKK 294 (295)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEECCEEEEEEEe
Confidence 888877776665544
No 113
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.02 E-value=5.3e-09 Score=89.70 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=87.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCCCC-----CccceeEehhh---
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFEAI-----SPADAVLLKWI--- 198 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~~~-----p~~D~v~~~~v--- 198 (296)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|+++.. +.||+|+++=-
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 345899999999999999999999999999999 999988876 2233688999988732 24999987421
Q ss_pred ---hccCCch------------------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh
Q 022515 199 ---LHDWNDE------------------ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL 257 (296)
Q Consensus 199 ---lh~~~d~------------------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (296)
++..+++ -...+++.+.+.|+| ||++++.-. . +
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~~~-~-~--------------------- 219 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVETS-E-R--------------------- 219 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-c-c---------------------
Confidence 1111111 124788888899999 888775421 1 0
Q ss_pred cCccccCHHHHHHHHHhcCCceeEEEE
Q 022515 258 LTGTERDEKEWTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~ 284 (296)
..+++.+++++.||+...+..
T Consensus 220 ------~~~~v~~~l~~~g~~~~~~~~ 240 (251)
T TIGR03704 220 ------QAPLAVEAFARAGLIARVASS 240 (251)
T ss_pred ------hHHHHHHHHHHCCCCceeeEc
Confidence 234677888889987654443
No 114
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=6e-09 Score=90.02 Aligned_cols=129 Identities=21% Similarity=0.321 Sum_probs=90.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCee----EEeccCCC-CC-CccceeEehhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLK----YVGGDMFE-AI-SPADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~----~~~~D~~~-~~-p~~D~v~~~~v 198 (296)
..++.+|||||||+|-++++.++.- ..+++++|+ |..++.++. ..+.++ ....+... +. ..||+|+++ +
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN-I 237 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN-I 237 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh-h
Confidence 4588999999999999999988873 346999999 888877765 233333 33333333 22 259999884 3
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS 278 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~ 278 (296)
| .+ -..++...+.+.++| ||++++.-. ..+ ..+.+.+.+.++||+
T Consensus 238 L---A~-vl~~La~~~~~~lkp---gg~lIlSGI-l~~---------------------------q~~~V~~a~~~~gf~ 282 (300)
T COG2264 238 L---AE-VLVELAPDIKRLLKP---GGRLILSGI-LED---------------------------QAESVAEAYEQAGFE 282 (300)
T ss_pred h---HH-HHHHHHHHHHHHcCC---CceEEEEee-hHh---------------------------HHHHHHHHHHhCCCe
Confidence 4 22 345888999999999 787766542 211 245677889999999
Q ss_pred eeEEEEcCCcceEEE
Q 022515 279 DYKIIPILGLRSLIE 293 (296)
Q Consensus 279 ~~~~~~~~~~~~vi~ 293 (296)
++++..-....++.-
T Consensus 283 v~~~~~~~eW~~i~~ 297 (300)
T COG2264 283 VVEVLEREEWVAIVG 297 (300)
T ss_pred EeEEEecCCEEEEEE
Confidence 999888776665543
No 115
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.97 E-value=5.2e-09 Score=87.62 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=74.4
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---Cc
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---SP 189 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---p~ 189 (296)
.++..+. ..+..+|||||||+|.++..+++.. .+++++|. +++++.+++ ...+++++.+|..+.. ..
T Consensus 69 ~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 3344444 5677899999999999998777764 37999999 888887765 2356999999987743 25
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
||+|++...++++ .+.+.+.|+| ||++++.-
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCC---CcEEEEEE
Confidence 9999998766543 3456788999 89888754
No 116
>PRK00811 spermidine synthase; Provisional
Probab=98.94 E-value=3.4e-09 Score=92.53 Aligned_cols=98 Identities=19% Similarity=0.244 Sum_probs=75.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------CCCCeeEEeccCCC--C--CCcccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------DLANLKYVGGDMFE--A--ISPADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~D~~~--~--~p~~D~v 193 (296)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.|++ ..+|++++.+|..+ . ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4568999999999999999997655568999999 999998876 15789999999876 2 2259999
Q ss_pred EehhhhccCCchH--HHHHHHHHHHhcccCCCCcEEEE
Q 022515 194 LLKWILHDWNDEE--CVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 194 ~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli 229 (296)
++...-+..+... ..++++.+++.|+| ||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 9864333222221 25789999999999 787665
No 117
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.5e-08 Score=84.78 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=96.1
Q ss_pred HHHHHHHccchhc----hHHHHHhcccccCCCCEEEEecCCchHHHHHHHH-HCCCCeEEeccc-hhHhhccCC------
Q 022515 104 FFNEAMASDAWLA----TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAK-AFPKLECTCFDL-PHVVNGLDS------ 171 (296)
Q Consensus 104 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~------ 171 (296)
.|...|....+.+ +..++.... ..++.+|+|.|-|+|.++..|+. -.|.-+++.+|. ++..+.|++
T Consensus 66 d~~~~~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~ 143 (256)
T COG2519 66 DYLLSMKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG 143 (256)
T ss_pred HHHHhCcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc
Confidence 3444466555543 345666666 88999999999999999999997 557789999999 899988876
Q ss_pred CCCCeeEEeccCCCC-CC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 172 DLANLKYVGGDMFEA-IS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 172 ~~~ri~~~~~D~~~~-~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
..+++++..+|+.+. .+ .+|++++ |.|++- +.+.++.++|+| ||.+++.-++.+
T Consensus 144 l~d~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y~P~ve 199 (256)
T COG2519 144 LGDRVTLKLGDVREGIDEEDVDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVYSPTVE 199 (256)
T ss_pred cccceEEEeccccccccccccCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEEcCCHH
Confidence 578899999999983 33 5999999 677764 789999999999 999988776543
No 118
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=2.3e-08 Score=87.00 Aligned_cols=130 Identities=23% Similarity=0.359 Sum_probs=92.5
Q ss_pred EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC-ccceeEeh------h--
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS-PADAVLLK------W-- 197 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p-~~D~v~~~------~-- 197 (296)
+|||+|||+|..++.++.++|+++++++|+ |..++.|++ ...++.++.+|.+++.+ .||+|+++ .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 999988876 22777788889999665 59998873 1
Q ss_pred -----hhccCC--------c--hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccc
Q 022515 198 -----ILHDWN--------D--EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTE 262 (296)
Q Consensus 198 -----vlh~~~--------d--~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 262 (296)
+..+-| | +-..+++..+.+.|+| |.++++|.-..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~----~g~l~le~g~~--------------------------- 241 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP----GGVLILEIGLT--------------------------- 241 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC----CcEEEEEECCC---------------------------
Confidence 111111 1 1345788888899998 44555553211
Q ss_pred cCHHHHHHHHHhcC-CceeEEEEc-CCcceEEEE
Q 022515 263 RDEKEWTKLFTYAG-FSDYKIIPI-LGLRSLIEV 294 (296)
Q Consensus 263 rt~~e~~~ll~~aG-f~~~~~~~~-~~~~~vi~~ 294 (296)
..+++.+++.+.| |..+...+- .+...++.+
T Consensus 242 -q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 242 -QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred -cHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 3567889999999 665555544 344444443
No 119
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.89 E-value=1e-08 Score=84.15 Aligned_cols=94 Identities=19% Similarity=0.354 Sum_probs=69.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC---------CC--ccceeE
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA---------IS--PADAVL 194 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~---------~p--~~D~v~ 194 (296)
..++.+|||+|||+|.++..+++++ +..+++++|+ +.+ . ..+++++.+|+.+. .+ .+|+|+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~--~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P--IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c--CCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 4677899999999999999999887 5678999999 543 1 24688888898752 22 499999
Q ss_pred ehhhhc---cCCc------hHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 195 LKWILH---DWND------EECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 195 ~~~vlh---~~~d------~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
+....| .|.. +....+|+++.+.|+| ||++++.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 854322 1111 1235789999999999 8988875
No 120
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.89 E-value=3e-08 Score=80.69 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=93.3
Q ss_pred chhhcccCchHHHHHHHHHHcc-chh---chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHh
Q 022515 91 LWEYAGDEPKLNNFFNEAMASD-AWL---ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVV 166 (296)
Q Consensus 91 ~~~~~~~~~~~~~~f~~~m~~~-~~~---~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~ 166 (296)
-++.+.++|+....|+.....- .+| -.+.+++.+.. .++...|.|+|||.+.++..+.. ..++.-+|+-.
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva-- 103 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA-- 103 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S------EEEEESS---
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhccc---CceEEEeeccC--
Confidence 3455667787766665543322 222 24455665551 34457999999999999966532 35788888722
Q ss_pred hccCCCCCCeeEEeccCCC-CCCc--cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCch
Q 022515 167 NGLDSDLANLKYVGGDMFE-AISP--ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKS 243 (296)
Q Consensus 167 ~~a~~~~~ri~~~~~D~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~ 243 (296)
..+ .+++.|+.+ |.+. .|++++.-.|-.- +...+++++.|+||| ||.|.|.|....
T Consensus 104 -----~n~--~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~---~G~L~IAEV~SR-------- 162 (219)
T PF05148_consen 104 -----PNP--RVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKP---GGILKIAEVKSR-------- 162 (219)
T ss_dssp -----SST--TEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEE---EEEEEEEEEGGG--------
T ss_pred -----CCC--CEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheecc---CcEEEEEEeccc--------
Confidence 122 466789977 7663 8999988777432 245789999999999 999999996331
Q ss_pred hhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEE
Q 022515 244 IETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEV 294 (296)
Q Consensus 244 ~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~ 294 (296)
.- +.+++.+.++..||+...........-+++.
T Consensus 163 -----f~-------------~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F 195 (219)
T PF05148_consen 163 -----FE-------------NVKQFIKALKKLGFKLKSKDESNKHFVLFEF 195 (219)
T ss_dssp ------S--------------HHHHHHHHHCTTEEEEEEE--STTEEEEEE
T ss_pred -----Cc-------------CHHHHHHHHHHCCCeEEecccCCCeEEEEEE
Confidence 10 5678889999999998875444444444443
No 121
>PRK01581 speE spermidine synthase; Validated
Probab=98.88 E-value=7.9e-09 Score=91.59 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=75.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------------CCCCeeEEeccCCC---CC-Cccc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------------DLANLKYVGGDMFE---AI-SPAD 191 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~D~~~---~~-p~~D 191 (296)
.++.+||+||||+|..+..+++..+..+++++|+ |.|++.|++ ..+|++++.+|..+ .. ..||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4567999999999999999988655679999999 999998874 25799999999886 22 2599
Q ss_pred eeEehhhhc---cCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 192 AVLLKWILH---DWNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 192 ~v~~~~vlh---~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
+|++...-. ....-...++++.+++.|+| ||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 999963100 00111235789999999999 8877664
No 122
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.87 E-value=3.2e-09 Score=87.24 Aligned_cols=99 Identities=9% Similarity=0.195 Sum_probs=70.9
Q ss_pred CCCEEEEecCCchHHH----HHHHHHC----C-CCeEEeccc-hhHhhccCC----------------------------
Q 022515 130 GLNSLVDVGGGIGTAA----KAIAKAF----P-KLECTCFDL-PHVVNGLDS---------------------------- 171 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~----~~l~~~~----p-~~~~~~~D~-~~~~~~a~~---------------------------- 171 (296)
+.-+|...||++|.=. +.+.+.. + ..++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5679999999999533 3333311 2 468899999 899988765
Q ss_pred -----CCCCeeEEeccCCC-CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 172 -----DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 172 -----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
...+|+|..+|..+ +.+ ++|+|+|++||-+++++...+++++++++|+| ||.|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEec
Confidence 13679999999999 322 59999999999999999999999999999999 88887764
No 123
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.86 E-value=5.5e-09 Score=85.48 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=98.3
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEe-ccCCC--CCCccc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVG-GDMFE--AISPAD 191 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~-~D~~~--~~p~~D 191 (296)
.+++...+ ..+..++||+|||||-....+...- -+.+++|+ ..|++.|.+ ..+....-. .+|.. +...+|
T Consensus 115 ~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 115 AEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 34444444 4457999999999999998887763 37889999 899999875 233222211 12443 233599
Q ss_pred eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHH
Q 022515 192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKL 271 (296)
Q Consensus 192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 271 (296)
+|....||-.+..-+ .++--+...|+| ||.+.+.-...+..... ...+. .-..++..-++++
T Consensus 191 Li~AaDVl~YlG~Le--~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f-~l~ps------------~RyAH~~~YVr~~ 252 (287)
T COG4976 191 LIVAADVLPYLGALE--GLFAGAAGLLAP---GGLFAFSVETLPDDGGF-VLGPS------------QRYAHSESYVRAL 252 (287)
T ss_pred chhhhhHHHhhcchh--hHHHHHHHhcCC---CceEEEEecccCCCCCe-ecchh------------hhhccchHHHHHH
Confidence 999999998877654 789999999999 77665554433332110 00000 0112366778999
Q ss_pred HHhcCCceeEEEEc
Q 022515 272 FTYAGFSDYKIIPI 285 (296)
Q Consensus 272 l~~aGf~~~~~~~~ 285 (296)
++..||+++.+.++
T Consensus 253 l~~~Gl~~i~~~~t 266 (287)
T COG4976 253 LAASGLEVIAIEDT 266 (287)
T ss_pred HHhcCceEEEeecc
Confidence 99999999998776
No 124
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.85 E-value=2e-08 Score=88.86 Aligned_cols=100 Identities=14% Similarity=0.281 Sum_probs=75.4
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---C
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---S 188 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---p 188 (296)
.+++.++ .+++.+|||||||+|.++..+++..+. .+++++|. +++++.|++ ..+++.++.+|..+.. .
T Consensus 71 ~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 71 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 3444444 567789999999999999999998763 47999999 898887765 3467999999987632 3
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.||+|++...+++. ...+.+.|+| ||++++..
T Consensus 149 ~fD~Ii~~~g~~~i--------p~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVGVDEV--------PETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred CccEEEECCchHHh--------HHHHHHhcCC---CCEEEEEe
Confidence 59999997655433 3345678999 89988754
No 125
>PLN02366 spermidine synthase
Probab=98.84 E-value=1.6e-08 Score=88.86 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=73.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---CC-C-cccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---AI-S-PADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~~-p-~~D~v 193 (296)
+++.+||+||||.|..+.++++..+..+++++|+ +.+++.+++ ..+|++++.+|..+ .. + .||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999986533468999999 889998876 14699999999754 23 2 59999
Q ss_pred EehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEE
Q 022515 194 LLKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 194 ~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
++...-+..+.. -..++++.++++|+| ||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 985433222211 135789999999999 887654
No 126
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.83 E-value=3.6e-08 Score=84.55 Aligned_cols=99 Identities=11% Similarity=0.207 Sum_probs=82.1
Q ss_pred CCCEEEEecCCch----HHHHHHHHHCC-----CCeEEeccc-hhHhhccCC----------------------------
Q 022515 130 GLNSLVDVGGGIG----TAAKAIAKAFP-----KLECTCFDL-PHVVNGLDS---------------------------- 171 (296)
Q Consensus 130 ~~~~vLDvGgG~G----~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 171 (296)
+.-+|.-.||+|| .+++.+.+.+| ..++++.|+ ..+++.|++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4679999999999 45566666775 478999999 889988765
Q ss_pred ------CCCCeeEEeccCCCC--CC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 172 ------DLANLKYVGGDMFEA--IS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 172 ------~~~ri~~~~~D~~~~--~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
....|.|..+|.+++ .+ +||+|+|.+||-.++.+.-.+++++++..|+| ||.|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEcc
Confidence 124588999999984 34 49999999999999998889999999999999 88888865
No 127
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.83 E-value=1.5e-08 Score=81.78 Aligned_cols=82 Identities=13% Similarity=0.312 Sum_probs=63.0
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCc--c
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISP--A 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~--~ 190 (296)
..+++.++ ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+. +
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 34555555 566789999999999999999988 578999999 888888765 34689999999998 5553 7
Q ss_pred ceeEehhhhccCCc
Q 022515 191 DAVLLKWILHDWND 204 (296)
Q Consensus 191 D~v~~~~vlh~~~d 204 (296)
|.|+.+ .-++...
T Consensus 79 d~vi~n-~Py~~~~ 91 (169)
T smart00650 79 YKVVGN-LPYNIST 91 (169)
T ss_pred CEEEEC-CCcccHH
Confidence 888764 3333433
No 128
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.83 E-value=1.4e-08 Score=88.24 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=75.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---C-CCccceeE
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---A-ISPADAVL 194 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~-~p~~D~v~ 194 (296)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ ...|++++.+|.++ . ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988766678999999 899888775 14688999888765 1 23599999
Q ss_pred ehhhhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 022515 195 LKWILHDWNDEE--CVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 195 ~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
+...-+.-+... ..++++++++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 865432222222 35789999999999 8887765
No 129
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.82 E-value=2.3e-08 Score=84.96 Aligned_cols=142 Identities=20% Similarity=0.337 Sum_probs=83.0
Q ss_pred CCCEEEEecCCchH--HHHHH-HHHCCCCeEEeccc-hhHhhccCC---CCC--CeeEEeccCCCC---C--C---c-cc
Q 022515 130 GLNSLVDVGGGIGT--AAKAI-AKAFPKLECTCFDL-PHVVNGLDS---DLA--NLKYVGGDMFEA---I--S---P-AD 191 (296)
Q Consensus 130 ~~~~vLDvGgG~G~--~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~---~~~--ri~~~~~D~~~~---~--p---~-~D 191 (296)
+...+||||||--. ..-++ .+..|+.+++.+|. |-++..++. ..+ +..++.+|+.++ + | . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 77899999999652 22333 44679999999999 889988876 233 489999999983 1 2 1 33
Q ss_pred -----eeEehhhhccCCc-hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCH
Q 022515 192 -----AVLLKWILHDWND-EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDE 265 (296)
Q Consensus 192 -----~v~~~~vlh~~~d-~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 265 (296)
.+++..+||+.+| ++...+++.++++|.| |+.|.|.....+.. +. .......++.........||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~----p~-~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGA----PE-RAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTS----HH-HHHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCC----HH-HHHHHHHHHHcCCCCceecCH
Confidence 6888999999987 6788999999999999 88888888765322 11 112222333222345678899
Q ss_pred HHHHHHHHhcCCceeE
Q 022515 266 KEWTKLFTYAGFSDYK 281 (296)
Q Consensus 266 ~e~~~ll~~aGf~~~~ 281 (296)
+|+.++|. ||+.++
T Consensus 220 ~ei~~~f~--g~elve 233 (267)
T PF04672_consen 220 EEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHCCT--TSEE-T
T ss_pred HHHHHHcC--CCccCC
Confidence 99999988 777543
No 130
>PRK03612 spermidine synthase; Provisional
Probab=98.81 E-value=3.3e-08 Score=93.41 Aligned_cols=98 Identities=19% Similarity=0.316 Sum_probs=74.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC------------CCCCeeEEeccCCC---CCC-cc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS------------DLANLKYVGGDMFE---AIS-PA 190 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~D~~~---~~p-~~ 190 (296)
+++++|||||||+|..+.++++ +|. .+++++|+ |++++.+++ ..+|++++.+|.++ ..+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4568999999999999999987 565 79999999 999998875 13689999999876 223 59
Q ss_pred ceeEehhhhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 191 DAVLLKWILHDWNDE---ECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 191 D~v~~~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
|+|++...-...+.. -..++++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999996432211111 124689999999999 7876654
No 131
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.80 E-value=1.8e-08 Score=87.50 Aligned_cols=99 Identities=13% Similarity=0.223 Sum_probs=78.4
Q ss_pred CCCEEEEecCCchHH----HHHHHHHCC----CCeEEeccc-hhHhhccCC-----------------------------
Q 022515 130 GLNSLVDVGGGIGTA----AKAIAKAFP----KLECTCFDL-PHVVNGLDS----------------------------- 171 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~----~~~l~~~~p----~~~~~~~D~-~~~~~~a~~----------------------------- 171 (296)
+.-+|...||+||.= ++.+.+..+ +.++++.|+ +.+++.|++
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 347999999999953 333444332 468999999 899988765
Q ss_pred -------CCCCeeEEeccCCC-CCC---ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 172 -------DLANLKYVGGDMFE-AIS---PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 172 -------~~~ri~~~~~D~~~-~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
...+|+|..+|..+ +.| .||+|+|.+++.+++++...+++++++++|+| ||.|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEeC
Confidence 11567899999998 443 59999999999999999889999999999999 88876654
No 132
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.79 E-value=6.5e-08 Score=82.12 Aligned_cols=142 Identities=18% Similarity=0.267 Sum_probs=98.8
Q ss_pred HHHHHHHccchhc----hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC------
Q 022515 104 FFNEAMASDAWLA----TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS------ 171 (296)
Q Consensus 104 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------ 171 (296)
.|...|...++.+ +..++..++ ..++.+||+.|.|+|.++..|++. .|.-+++.+|. ++-++.|++
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g 89 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG 89 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC
Confidence 3455555555543 235566666 889999999999999999999974 58889999999 888888876
Q ss_pred CCCCeeEEeccCCC-CC-----CccceeEehhhhccCCchHHHHHHHHHHHhc-ccCCCCcEEEEEeeeeCCCCCCCchh
Q 022515 172 DLANLKYVGGDMFE-AI-----SPADAVLLKWILHDWNDEECVKILKKCKEAI-TSDGKKGKVIIIDMIRENKKGDDKSI 244 (296)
Q Consensus 172 ~~~ri~~~~~D~~~-~~-----p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL-~p~~~gG~lli~e~~~~~~~~~~~~~ 244 (296)
..+++++..+|+.+ .+ ..+|.|++ |+|++- ..+.++.++| +| ||++.+.-++...
T Consensus 90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~fsP~ieQ-------- 151 (247)
T PF08704_consen 90 LDDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCFSPCIEQ-------- 151 (247)
T ss_dssp CCTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEEESSHHH--------
T ss_pred CCCCceeEecceecccccccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEECCCHHH--------
Confidence 56799999999975 33 24899998 778775 6799999999 88 9999887654321
Q ss_pred hhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 245 ETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 245 ~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
.....+.|++.||..+++..+
T Consensus 152 --------------------v~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 152 --------------------VQKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp --------------------HHHHHHHHHHTTEEEEEEEEE
T ss_pred --------------------HHHHHHHHHHCCCeeeEEEEE
Confidence 223345667789987766543
No 133
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.78 E-value=3.9e-08 Score=83.51 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=76.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---------CCcc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---------ISPA 190 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---------~p~~ 190 (296)
..+..+|||||||+|..+..+++..| +.+++.+|. ++.++.|++ ..++|+++.+|..+. .+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45678999999999999999998765 679999999 888888776 468999999998762 1359
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
|+|++. -+.+.-..++..+.+.|+| ||.|++-+..+
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~---GG~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKV---GGIIAFDNTLW 181 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC---CeEEEEEcCCc
Confidence 999884 2334445789999999999 77655444333
No 134
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.77 E-value=1.7e-08 Score=83.34 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=70.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCC-----eeEEeccCCCCC--C-ccceeEehhhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLAN-----LKYVGGDMFEAI--S-PADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r-----i~~~~~D~~~~~--p-~~D~v~~~~vl 199 (296)
..+.++|||||+|..++.++..|. ++++.|+ +.|++.+++ ...+ .++..-++.+-. + ..|+|++..++
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 445899999999988888888765 7899999 999999986 1111 111122222211 2 48999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
|.++-+ ++.+.++++|++ +||.+.+....
T Consensus 111 HWFdle---~fy~~~~rvLRk--~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWFDLE---RFYKEAYRVLRK--DGGLIAVWNYN 139 (261)
T ss_pred HhhchH---HHHHHHHHHcCC--CCCEEEEEEcc
Confidence 988765 689999999998 36777776654
No 135
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.77 E-value=1.7e-08 Score=83.85 Aligned_cols=102 Identities=17% Similarity=0.270 Sum_probs=75.0
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC--
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS-- 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p-- 188 (296)
..+++.+. ++++.+|||||||+|.++.-++... +.-+++.+|. +..++.|++ ...++.++.+|.....+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 35566666 7889999999999999999988875 3447899999 999998877 46689999999887443
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+||.|++.......|. .+.+.|++ ||+|++.-.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEEES
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEEEc
Confidence 4999999877653332 35555899 999887543
No 136
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.1e-08 Score=79.30 Aligned_cols=100 Identities=13% Similarity=0.224 Sum_probs=79.0
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC---
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--- 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--- 188 (296)
-.++..+. ++++.+||+||||+|..+.-|++.-- +++.+|+ ++.++.|++ ...+|.++.+|-..-+|
T Consensus 62 A~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 62 ARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 34555556 78899999999999999998888753 8999999 898988876 35569999999998544
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+||.|+..-..-..|+ .+.+-|+| ||++++-..
T Consensus 138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPE--------ALLDQLKP---GGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCH--------HHHHhccc---CCEEEEEEc
Confidence 5999999776654443 34455899 999998776
No 137
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.73 E-value=8e-08 Score=88.85 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=78.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCC---C-C-ccceeEe--
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEA---I-S-PADAVLL-- 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~---~-p-~~D~v~~-- 195 (296)
..++.+|||+|||+|..+..+++..++.+++++|+ +.+++.+++ ..-+++++.+|..+. . + .||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45678999999999999999999988789999999 888888765 333578999999862 1 2 4999984
Q ss_pred --hh--hhcc-------CCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 196 --KW--ILHD-------WNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 196 --~~--vlh~-------~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
+. ++.. ...++ ..++|+++.+.|+| ||++++.....
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 375 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSI 375 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 21 1211 11111 24789999999999 99988877544
No 138
>PLN02672 methionine S-methyltransferase
Probab=98.73 E-value=8.4e-08 Score=96.15 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=88.4
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---C------------------CCCeeEEeccCCCCCC
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---D------------------LANLKYVGGDMFEAIS 188 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------------------~~ri~~~~~D~~~~~p 188 (296)
+.+|||+|||+|.+++.+++++|..+++++|+ |.+++.|++ . .+|++|+.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 999987754 1 2589999999998442
Q ss_pred ----ccceeEehh--h------------h--------ccC----C------ch----HHHHHHHHHHHhcccCCCCcEEE
Q 022515 189 ----PADAVLLKW--I------------L--------HDW----N------DE----ECVKILKKCKEAITSDGKKGKVI 228 (296)
Q Consensus 189 ----~~D~v~~~~--v------------l--------h~~----~------d~----~~~~iL~~~~~aL~p~~~gG~ll 228 (296)
.||+|+++= | . |.. + ++ -..++++.+.+.|+| ||. +
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p---gG~-l 274 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP---MGI-M 274 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC---CCE-E
Confidence 489987731 1 1 100 0 01 115677778888888 664 4
Q ss_pred EEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH-HHHHhcCCceeEEEEcC
Q 022515 229 IIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT-KLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 229 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~-~ll~~aGf~~~~~~~~~ 286 (296)
++|.-.. ..+.+. +++++.||+.++++...
T Consensus 275 ~lEiG~~----------------------------q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 275 IFNMGGR----------------------------PGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred EEEECcc----------------------------HHHHHHHHHHHHCCCCeeEEeeeh
Confidence 4554211 234666 58889999988877653
No 139
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.71 E-value=1.6e-07 Score=78.96 Aligned_cols=140 Identities=16% Similarity=0.223 Sum_probs=90.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCC-ccceeEehhhhccCCchHH
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAIS-PADAVLLKWILHDWNDEEC 207 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p-~~D~v~~~~vlh~~~d~~~ 207 (296)
...++||||.|.|..+..++..|.+ +++-+. +.|...-++ ..++++..|-....+ .||+|.|.++|-...++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~--kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~- 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK--KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPL- 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh--CCCeEEehhhhhccCCceEEEeehhhhhccCCHH-
Confidence 4578999999999999999999875 555676 777665542 334444433333222 599999999996555554
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeeeCC----C-C--CCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 208 VKILKKCKEAITSDGKKGKVIIIDMIREN----K-K--GDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 208 ~~iL~~~~~aL~p~~~gG~lli~e~~~~~----~-~--~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
.+|+.++++|+| +|++++.-...-. . . ..+|. ..+++ ....-+-....+.+.|+.+||++.
T Consensus 169 -~LL~~i~~~l~p---~G~lilAvVlP~~pyVE~~~g~~~~P~----e~l~~----~g~~~E~~v~~l~~v~~p~GF~v~ 236 (265)
T PF05219_consen 169 -TLLRDIRRALKP---NGRLILAVVLPFRPYVEFGGGKSNRPS----ELLPV----KGATFEEQVSSLVNVFEPAGFEVE 236 (265)
T ss_pred -HHHHHHHHHhCC---CCEEEEEEEecccccEEcCCCCCCCch----hhcCC----CCCcHHHHHHHHHHHHHhcCCEEE
Confidence 889999999999 7887765422110 0 0 10110 01111 011112234455588999999999
Q ss_pred EEEEcC
Q 022515 281 KIIPIL 286 (296)
Q Consensus 281 ~~~~~~ 286 (296)
+....|
T Consensus 237 ~~tr~P 242 (265)
T PF05219_consen 237 RWTRLP 242 (265)
T ss_pred EEeccC
Confidence 998875
No 140
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.71 E-value=7.5e-08 Score=89.07 Aligned_cols=106 Identities=14% Similarity=0.142 Sum_probs=80.0
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC----CccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI----SPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~----p~~D~v~~ 195 (296)
..++.+|||+|||+|..+.++++..+..+++++|+ +.+++.+++ ...++.+..+|... +. ..||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 45678999999999999999999888789999999 888887765 12234557777765 22 24999986
Q ss_pred ------hhhhccCCch--------------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 196 ------KWILHDWNDE--------------ECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 196 ------~~vlh~~~d~--------------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
..+++..|+- ...++|+++.+.|+| ||+++........
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~ 373 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLP 373 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 2456654441 125799999999999 9999988766644
No 141
>PHA03412 putative methyltransferase; Provisional
Probab=98.70 E-value=1.4e-07 Score=78.96 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=70.6
Q ss_pred CCEEEEecCCchHHHHHHHHHC---CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccceeEehhhhccCC-
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAF---PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADAVLLKWILHDWN- 203 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~~- 203 (296)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|++...++.+..+|+.. +.. .||+|+++=-.+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4678999999 99999998745679999999987 433 599999854333211
Q ss_pred -c--------hHHHHHHHHHHHhcccCCCCcEE
Q 022515 204 -D--------EECVKILKKCKEAITSDGKKGKV 227 (296)
Q Consensus 204 -d--------~~~~~iL~~~~~aL~p~~~gG~l 227 (296)
+ .-...+++++.+.++| |.+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ----GTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC----CEE
Confidence 1 1134688899987776 665
No 142
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.68 E-value=8.8e-08 Score=78.93 Aligned_cols=97 Identities=16% Similarity=0.319 Sum_probs=71.0
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC----CC--ccceeEehhhh
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA----IS--PADAVLLKWIL 199 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~----~p--~~D~v~~~~vl 199 (296)
..+||||||.|.++.++++.+|+..++++|+ ...+..+.+ ...++.++.+|...- ++ ..|-|++.+-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 3899999999999999999999999999999 777766543 689999999998871 22 36666663211
Q ss_pred ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 200 HDWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 200 h~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
-|+... ...+|+.+++.|+| ||.|.+...
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~TD 134 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFATD 134 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEES
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEeC
Confidence 122211 25789999999999 998877653
No 143
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=1.9e-07 Score=86.82 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=77.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-ccceeEeh--
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS-PADAVLLK-- 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p-~~D~v~~~-- 196 (296)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..++|+++.+|..+ ..+ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44668999999999999999888654 468999999 899887765 23579999999887 322 49999862
Q ss_pred ----hhh-------ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 197 ----WIL-------HDWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 197 ----~vl-------h~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
.++ ..+..++ -.++|+++.+.|+| ||+++.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 111 1222222 23689999999999 899888775554
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.64 E-value=2.2e-07 Score=86.47 Aligned_cols=104 Identities=15% Similarity=0.239 Sum_probs=77.0
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC---CC-ccceeEeh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA---IS-PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~---~p-~~D~v~~~ 196 (296)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..++++++.+|+.+. .+ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4567899999999999999999986 6789999999 888877765 234599999998762 33 59999873
Q ss_pred h------hhccCC-------chH-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 197 W------ILHDWN-------DEE-------CVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 197 ~------vlh~~~-------d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
- ++.+.| ..+ ..++|+++.+.|+| ||+++......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence 2 111111 111 24689999999999 99987655433
No 145
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.62 E-value=4.7e-07 Score=84.21 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=82.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC-----C--CccceeE
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA-----I--SPADAVL 194 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~-----~--p~~D~v~ 194 (296)
..++.+|||+|||+|.++..+++.. .+++++|. +++++.|++ ..++++++.+|+.+. . ..||+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 4566799999999999999999885 58999999 999988876 235799999998652 2 1489998
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY 274 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~ 274 (296)
+ +-|......+++.+.+ ++| ++.++|.-. +. .. .|+ + ..|.+
T Consensus 373 ~-----dPPr~g~~~~~~~l~~-~~~---~~ivyvSCn--p~----------tl-------------aRD---l-~~L~~ 414 (443)
T PRK13168 373 L-----DPPRAGAAEVMQALAK-LGP---KRIVYVSCN--PA----------TL-------------ARD---A-GVLVE 414 (443)
T ss_pred E-----CcCCcChHHHHHHHHh-cCC---CeEEEEEeC--hH----------Hh-------------hcc---H-HHHhh
Confidence 7 3343333455666655 577 555555431 10 00 112 2 23457
Q ss_pred cCCceeEEEEcCC
Q 022515 275 AGFSDYKIIPILG 287 (296)
Q Consensus 275 aGf~~~~~~~~~~ 287 (296)
.||++.++.++.-
T Consensus 415 ~gY~l~~i~~~Dm 427 (443)
T PRK13168 415 AGYRLKRAGMLDM 427 (443)
T ss_pred CCcEEEEEEEecc
Confidence 8999999998753
No 146
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.61 E-value=2.5e-07 Score=85.76 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=79.4
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C----C--Ccccee
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A----I--SPADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~----~--p~~D~v 193 (296)
..++.+|||+|||+|..+.++++... ..+++++|+ +.+++.+++ ...+|+++.+|..+ + . ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45678999999999999999998754 468999999 888887765 33569999999876 3 1 149999
Q ss_pred Eeh------hhhccCCch-------H-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 194 LLK------WILHDWNDE-------E-------CVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 194 ~~~------~vlh~~~d~-------~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
++. .+++..++. + ..++|+++.+.||| ||+++......
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 973 355544431 1 25889999999999 99988776544
No 147
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.60 E-value=6e-08 Score=80.33 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=76.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---------CCcc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---------ISPA 190 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---------~p~~ 190 (296)
..+..+||+||+++|..++.+++..| +.+++.+|. |+..+.|++ ..+||+++.||..+. .+.|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45678999999999999999999887 589999999 888888876 468999999998751 1259
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
|+|++-. +..+-...+..+.+.|+| |.++|+|.+.
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l 157 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVL 157 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTT
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccC----CeEEEEcccc
Confidence 9999953 445556889999999999 5566666443
No 148
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.60 E-value=1.3e-06 Score=72.96 Aligned_cols=156 Identities=19% Similarity=0.255 Sum_probs=100.7
Q ss_pred hhhcccCchHHHHHHHHHHccch-h---chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhh
Q 022515 92 WEYAGDEPKLNNFFNEAMASDAW-L---ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVN 167 (296)
Q Consensus 92 ~~~~~~~~~~~~~f~~~m~~~~~-~---~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~ 167 (296)
++.+.++|.....|+........ | -.+.+++.+.. -++...|.|+|||.+.++. -..-++..+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~-r~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a--- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKR-RPKNIVIADFGCGEAKIAS-----SERHKVHSFDLVA--- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh-CcCceEEEecccchhhhhh-----ccccceeeeeeec---
Confidence 34556677766666654443221 1 23455665551 3456789999999999885 1133677888622
Q ss_pred ccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchh
Q 022515 168 GLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSI 244 (296)
Q Consensus 168 ~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~ 244 (296)
.+-++++.|+.+ |.+ ..|++++...|-. .+...++++++|+|+| ||.++|.|....
T Consensus 210 ------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~---gG~l~IAEv~SR--------- 268 (325)
T KOG3045|consen 210 ------VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKP---GGLLYIAEVKSR--------- 268 (325)
T ss_pred ------CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhcc---CceEEEEehhhh---------
Confidence 223456778888 665 4899888776642 2345789999999999 999999985321
Q ss_pred hhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEE
Q 022515 245 ETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEV 294 (296)
Q Consensus 245 ~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~ 294 (296)
+. +...+.+.+...||.+....-....+.+.+.
T Consensus 269 ----f~-------------dv~~f~r~l~~lGF~~~~~d~~n~~F~lfef 301 (325)
T KOG3045|consen 269 ----FS-------------DVKGFVRALTKLGFDVKHKDVSNKYFTLFEF 301 (325)
T ss_pred ----cc-------------cHHHHHHHHHHcCCeeeehhhhcceEEEEEE
Confidence 11 4455788889999987765444444444443
No 149
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.58 E-value=1.8e-07 Score=83.06 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=72.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------------CCCeeEEeccCCCC-----C-
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------------LANLKYVGGDMFEA-----I- 187 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------------~~ri~~~~~D~~~~-----~- 187 (296)
+..+|||+|||.|.-+....... -..++++|+ +..++.|++ . .-...|..+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999999998888763 347999999 788887765 1 12355677887752 1
Q ss_pred -C--ccceeEehhhhcc-CC-chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 188 -S--PADAVLLKWILHD-WN-DEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 188 -p--~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+ .||+|-+...||+ +. .+.+..+|+++...|+| ||.++.+-+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEec
Confidence 2 4999999999998 34 55677799999999999 777776553
No 150
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.57 E-value=3e-07 Score=79.36 Aligned_cols=82 Identities=15% Similarity=0.278 Sum_probs=64.4
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCccc
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISPAD 191 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~~D 191 (296)
...+++.+. ..++.+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ..++++++.+|+.+ +++.+|
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 445555555 566789999999999999999998 358999999 889888765 24789999999998 777788
Q ss_pred eeEehhhhccCC
Q 022515 192 AVLLKWILHDWN 203 (296)
Q Consensus 192 ~v~~~~vlh~~~ 203 (296)
.|+++-- ++++
T Consensus 94 ~Vv~NlP-y~i~ 104 (258)
T PRK14896 94 KVVSNLP-YQIS 104 (258)
T ss_pred EEEEcCC-cccC
Confidence 8777543 3444
No 151
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=4.4e-07 Score=83.89 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=77.6
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC-ccceeEeh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS-PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p-~~D~v~~~ 196 (296)
..++.+|||+|||+|..+.++++.. +..+++++|+ +..++.+++ ...++++..+|..+ + .+ .||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4567899999999999999999876 4679999999 888887765 23568999999876 3 12 49999862
Q ss_pred ------hhhc-------cCCch-------HHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 197 ------WILH-------DWNDE-------ECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 197 ------~vlh-------~~~d~-------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
.++. .++.+ .-.++|.++.+.|+| ||.++.......
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 1222 12211 125789999999999 888776665544
No 152
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.53 E-value=1.1e-06 Score=77.65 Aligned_cols=145 Identities=17% Similarity=0.142 Sum_probs=92.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEe----ccCCCCC--C--cccee
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVG----GDMFEAI--S--PADAV 193 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~----~D~~~~~--p--~~D~v 193 (296)
...++||||||+|.....++.+.++++++++|+ +..++.|++ ..++|++.. .+++... + .||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999988888888888999999999 899988876 346888854 2344321 2 49999
Q ss_pred EehhhhccCCchH---HHHHHHHHH----------------HhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh
Q 022515 194 LLKWILHDWNDEE---CVKILKKCK----------------EAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM 254 (296)
Q Consensus 194 ~~~~vlh~~~d~~---~~~iL~~~~----------------~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 254 (296)
+++=-+|.-..+. ..+-.++.. +.+.+ ||.+-++..+..+.. ....-.. .
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~------~~~~~~g--w 262 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESK------AFAKQVL--W 262 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHH------HHHhhCc--E
Confidence 9977666433321 112233322 22334 666555554443321 0000001 0
Q ss_pred hhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 255 MVLLTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 255 ~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
+..+-|+.-+.+.+.+.|++.|.+.++++.+
T Consensus 263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 263 FTSLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 1112366669999999999999988887775
No 153
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.53 E-value=7.3e-07 Score=77.18 Aligned_cols=105 Identities=14% Similarity=0.214 Sum_probs=76.5
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CCccceeEeh-
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--ISPADAVLLK- 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p~~D~v~~~- 196 (296)
..++.+|||+|||+|..+..+++... ...++++|+ +..++.+++ ...++.++.+|... + .+.||.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999988764 358999999 888877765 33568999998765 2 2359999862
Q ss_pred -----hhhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 197 -----WILH-------DWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 197 -----~vlh-------~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
.++. .|..++ ..++|+++.+.|+| ||+|+.......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 1221 122222 24699999999999 898876654443
No 154
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.53 E-value=3.5e-07 Score=78.69 Aligned_cols=92 Identities=13% Similarity=0.251 Sum_probs=66.5
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCccc
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISPAD 191 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~~D 191 (296)
...+++.++ ..++.+|||||||+|.++..++++.+ +++++|. +.+++.+++ ..++++++.+|+.+ +.+.+|
T Consensus 18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 345565555 56778999999999999999999976 5889999 888887765 25789999999998 555566
Q ss_pred --eeEehhhhccCCchHHHHHHHHHHH
Q 022515 192 --AVLLKWILHDWNDEECVKILKKCKE 216 (296)
Q Consensus 192 --~v~~~~vlh~~~d~~~~~iL~~~~~ 216 (296)
.+++++.-++++ ..++.++..
T Consensus 94 ~~~~vvsNlPy~i~----~~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVSNLPYNIS----SPLIFKLLE 116 (253)
T ss_pred CcceEEEcCChhhH----HHHHHHHhc
Confidence 344444444443 345555543
No 155
>PLN02476 O-methyltransferase
Probab=98.52 E-value=4.9e-07 Score=78.00 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=78.1
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C------Ccc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I------SPA 190 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~------p~~ 190 (296)
..+..+|||||+++|..++.+++..| +.+++.+|. ++..+.|++ ..++|+++.||..+. . +.|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45678999999999999999998765 668999999 888888876 568999999998661 1 359
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
|+|++- -+..+-...+..+.+.|+| ||.|++-+..++
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~---GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRV---GGVIVMDNVLWH 232 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC---CcEEEEecCccC
Confidence 999994 3445567889999999999 666555444443
No 156
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.52 E-value=4.3e-07 Score=75.40 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=81.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEe-ccCCC--C---CCcccee
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVG-GDMFE--A---ISPADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~-~D~~~--~---~p~~D~v 193 (296)
..+.++||+||.+.|..++.++...| +.+.|.+|. |+..+.|++ ..++|++.. ||..+ . .+.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999999 889999999 999999887 578899888 57765 2 2469999
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~ 237 (296)
|+- -...+-.+.|..+.+.|+| |.|+|+|.+....
T Consensus 137 FID-----adK~~yp~~le~~~~lLr~----GGliv~DNvl~~G 171 (219)
T COG4122 137 FID-----ADKADYPEYLERALPLLRP----GGLIVADNVLFGG 171 (219)
T ss_pred EEe-----CChhhCHHHHHHHHHHhCC----CcEEEEeecccCC
Confidence 994 3444556889999999999 5666666665544
No 157
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.50 E-value=3.4e-07 Score=79.61 Aligned_cols=74 Identities=15% Similarity=0.286 Sum_probs=58.3
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCCcc--c
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AISPA--D 191 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p~~--D 191 (296)
..+++.+. ..++.+|||||||+|.++..++++.+ +++++|+ +.+++.+++ ..++++++.+|+.+ +.+.+ |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 44555555 56678999999999999999999975 8999999 999998875 33789999999988 55543 5
Q ss_pred eeEe
Q 022515 192 AVLL 195 (296)
Q Consensus 192 ~v~~ 195 (296)
.|+.
T Consensus 108 ~vv~ 111 (272)
T PRK00274 108 KVVA 111 (272)
T ss_pred eEEE
Confidence 5544
No 158
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.50 E-value=3.6e-07 Score=75.61 Aligned_cols=109 Identities=13% Similarity=0.215 Sum_probs=67.1
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--------------CCCCeeEEeccC
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--------------DLANLKYVGGDM 183 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~~D~ 183 (296)
.+++.+. +.+...++|||||.|......+..++--+++|+++ +...+.|+. ...++++..+||
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 4555555 67788999999999999998888776666999999 777665543 357789999999
Q ss_pred CC-C-----CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 184 FE-A-----ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 184 ~~-~-----~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
.+ + +.++|+|++++.+ |+++ ...-|++....||+ |.+|+-.....+
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~---G~~IIs~~~~~~ 162 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKP---GARIISTKPFCP 162 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-T---T-EEEESS-SS-
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCC---CCEEEECCCcCC
Confidence 98 3 2358999999876 4554 44556777788998 767665444443
No 159
>PRK04148 hypothetical protein; Provisional
Probab=98.50 E-value=1.2e-06 Score=67.03 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=71.5
Q ss_pred HHHHHhcccccCCCCEEEEecCCchH-HHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCC----ccc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGT-AAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAIS----PAD 191 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p----~~D 191 (296)
..+.+.++ ..+..++||||||+|. ++..|.+. +..++++|+ |..++.++ ...++++.+|++++-+ ++|
T Consensus 6 ~~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~--~~~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 6 EFIAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAK--KLGLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred HHHHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHH--HhCCeEEECcCCCCCHHHHhcCC
Confidence 33444444 3345789999999996 77777765 679999999 88888776 3357899999999533 589
Q ss_pred eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+|+..+ |..+...-+.++.+... .-++|.-.
T Consensus 80 liysir-----pp~el~~~~~~la~~~~-----~~~~i~~l 110 (134)
T PRK04148 80 LIYSIR-----PPRDLQPFILELAKKIN-----VPLIIKPL 110 (134)
T ss_pred EEEEeC-----CCHHHHHHHHHHHHHcC-----CCEEEEcC
Confidence 999865 66666777777777663 45555443
No 160
>PLN02823 spermine synthase
Probab=98.48 E-value=5.9e-07 Score=79.91 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=73.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC--C-C-CccceeE
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE--A-I-SPADAVL 194 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~--~-~-p~~D~v~ 194 (296)
.++.+||.||||.|..+..+++..+..+++++|+ |.+++.+++ ..+|++++.+|.++ . . ..||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3567999999999999999998766778999999 999999886 15799999999877 2 2 2599999
Q ss_pred ehhhhccCCc--h---HHHHHHH-HHHHhcccCCCCcEEEE
Q 022515 195 LKWILHDWND--E---ECVKILK-KCKEAITSDGKKGKVII 229 (296)
Q Consensus 195 ~~~vlh~~~d--~---~~~~iL~-~~~~aL~p~~~gG~lli 229 (296)
+--. ..+.. . -..++++ .+++.|+| ||.+++
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 8621 11100 0 0246787 89999999 776544
No 161
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.45 E-value=6.9e-07 Score=72.28 Aligned_cols=102 Identities=21% Similarity=0.219 Sum_probs=67.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC--------CCCCeeEEeccCCCCC------C-ccce
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS--------DLANLKYVGGDMFEAI------S-PADA 192 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~D~~~~~------p-~~D~ 192 (296)
..++.+|||+|||+|..++.+++.++..+++.-|.+++++..+. ...++++...|.-++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45678999999999999999998877789999999557665543 2577888888865521 2 4999
Q ss_pred eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
|+.+.++|+ ++....+++-+.+.|+| +|.+++....+
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 999999984 55667889999999999 67777766554
No 162
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.44 E-value=1.3e-06 Score=71.71 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=90.0
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-----ccceeEehhhhccCC
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-----PADAVLLKWILHDWN 203 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-----~~D~v~~~~vlh~~~ 203 (296)
..++|||||=+....+. .++-..++-+|+ +. . -.+...||++ |.| .||+|.++-||-+.|
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~--~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP 118 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------H--PGILQQDFMERPLPKNESEKFDVISLSLVLNFVP 118 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------C--CCceeeccccCCCCCCcccceeEEEEEEEEeeCC
Confidence 36999999876665433 355667999998 42 1 2456789998 765 399999999999999
Q ss_pred chH-HHHHHHHHHHhcccCCCCcE-----EEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515 204 DEE-CVKILKKCKEAITSDGKKGK-----VIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF 277 (296)
Q Consensus 204 d~~-~~~iL~~~~~aL~p~~~gG~-----lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf 277 (296)
++. .-++++++++.|+| +|. ++|+-+... ..+.+..+.+.|.++++.-||
T Consensus 119 ~p~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf 174 (219)
T PF11968_consen 119 DPKQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGF 174 (219)
T ss_pred CHHHHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCc
Confidence 664 45999999999999 788 776642211 134555689999999999999
Q ss_pred ceeEEEEcCC
Q 022515 278 SDYKIIPILG 287 (296)
Q Consensus 278 ~~~~~~~~~~ 287 (296)
..++.....-
T Consensus 175 ~~~~~~~~~K 184 (219)
T PF11968_consen 175 TRVKYKKSKK 184 (219)
T ss_pred EEEEEEecCe
Confidence 9988766553
No 163
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.43 E-value=1.1e-06 Score=71.86 Aligned_cols=93 Identities=13% Similarity=0.218 Sum_probs=67.7
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC--CCC--ccceeEehhhhccC--
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE--AIS--PADAVLLKWILHDW-- 202 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~--~~p--~~D~v~~~~vlh~~-- 202 (296)
..-|||||||+|-.+..|... +...+++|+ |.|++.|.+ ... =.+.-+|+-+ |++ .||-+++...++..
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-GDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-cCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 788999999999988766654 678999999 999999974 111 2456677777 332 39988876655321
Q ss_pred -------CchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 203 -------NDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 203 -------~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
|......++..++.+|++ |++-++
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 333456778889999998 777554
No 164
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.43 E-value=7.8e-07 Score=77.04 Aligned_cols=97 Identities=16% Similarity=0.259 Sum_probs=76.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---CCC-ccceeEe
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---AIS-PADAVLL 195 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~~p-~~D~v~~ 195 (296)
.+++||-||||.|..++++++..+--+++.+|+ |.+++.+++ ...|++++.+|-.+ ..+ .||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 447999999999999999999988889999999 999999987 25899999999876 344 5999998
Q ss_pred hhhhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 196 KWILHDWNDE---ECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 196 ~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
-..=.. ... -..++++.++++|++ +|.++..
T Consensus 156 D~tdp~-gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 156 DSTDPV-GPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred cCCCCC-CcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 542110 010 125899999999999 6766655
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.42 E-value=1e-06 Score=77.22 Aligned_cols=90 Identities=14% Similarity=0.297 Sum_probs=67.3
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS 188 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p 188 (296)
...+++... ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +.+
T Consensus 25 ~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 25 LDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 345555555 5677899999999999999999874 57999999 889888765 25789999999998 666
Q ss_pred ccceeEehhhhccCCchHHHHHH
Q 022515 189 PADAVLLKWILHDWNDEECVKIL 211 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL 211 (296)
.+|+++. +.-++++.+-..++|
T Consensus 101 ~~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 101 YFDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred ccCEEEe-cCCcccCcHHHHHHH
Confidence 7887765 444555555444444
No 166
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=8.3e-07 Score=71.95 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=75.7
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCC---------------CCCCeeEEe
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDS---------------DLANLKYVG 180 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~---------------~~~ri~~~~ 180 (296)
.+++.+...+.++.+.||||+|+|.++..++..- ++...+++|. |++++.+++ ...++.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 3444444446788999999999999998888643 4445589999 999987765 357789999
Q ss_pred ccCCCC---CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 181 GDMFEA---ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 181 ~D~~~~---~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
||-..- ..+||.|.+... +.++.+++..-|+| ||+++|--
T Consensus 151 GDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~---gGrllip~ 193 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKP---GGRLLIPV 193 (237)
T ss_pred CCccccCCccCCcceEEEccC--------ccccHHHHHHhhcc---CCeEEEee
Confidence 999883 335999988632 23566677777898 99998853
No 167
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.36 E-value=7.5e-07 Score=76.66 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=77.6
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCC----CeeEEeccCCC
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLA----NLKYVGGDMFE 185 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~----ri~~~~~D~~~ 185 (296)
..++..|. ++...++|+|||.|.-++..-++- -..++++|+ .-.++.|++ ... ...|.++|.+.
T Consensus 108 s~LI~~y~---~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT---KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh---ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 34444443 567789999999999998887763 237999999 556788876 112 36788888775
Q ss_pred C---------CCccceeEehhhhcc-CC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 186 A---------ISPADAVLLKWILHD-WN-DEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 186 ~---------~p~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
. .|.||+|-+.+++|. |. .+.+..+|+++.+.|+| ||..+-
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIg 235 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIG 235 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEE
Confidence 1 234999999999997 44 55678899999999999 665443
No 168
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.36 E-value=2.3e-06 Score=74.38 Aligned_cols=100 Identities=20% Similarity=0.351 Sum_probs=72.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCC---CCCCeeE--EeccCCC---CCCccceeEehhhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS---DLANLKY--VGGDMFE---AISPADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---~~~ri~~--~~~D~~~---~~p~~D~v~~~~vl 199 (296)
.+.+|||+|+|+|..+-+..+.++.. +++++|. +.+.+.++. ....... ...++.. +.+..|+|+++++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 45799999999999998888888754 6899999 888887765 1111110 1122221 23457999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
-.++++....+++++.+.+. +.|+|+|.-.
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt 142 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTA-----PVLVLVEPGT 142 (274)
T ss_pred hcCCchHHHHHHHHHHHhcc-----CcEEEEcCCC
Confidence 99998777788888877765 5899998644
No 169
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.35 E-value=2.4e-06 Score=83.74 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=71.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CC-CCeeEEeccCCCC---CC-ccceeEeh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DL-ANLKYVGGDMFEA---IS-PADAVLLK 196 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~D~~~~---~p-~~D~v~~~ 196 (296)
.++.+|||+|||+|.+++.+++. ...+++.+|+ +.+++.|++ .. ++++++.+|.++. .+ .||+|++.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 34679999999999999999986 2346999999 899998876 22 5899999998762 23 59999983
Q ss_pred hh--h------ccC-CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 197 WI--L------HDW-NDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 197 ~v--l------h~~-~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
=- - ..+ ....-..+++.+.+.|+| ||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 10 0 000 012235688899999999 8876554
No 170
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.34 E-value=1.8e-06 Score=73.47 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=76.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C-------Cc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I-------SP 189 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~-------p~ 189 (296)
..+..+||+||.++|..++.+++.. |+.+++.+|. ++..+.|++ ..++|+++.||..+ + . +.
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 4467899999999999999999876 4779999999 888888766 57999999999876 2 1 35
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
||+|++-. ....-...+..+.+.|+| || ++|+|.+.
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~---GG-viv~DNvl 192 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKV---GG-VIGYDNTL 192 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCC---Ce-EEEEcCCC
Confidence 99999953 344456788888999998 55 55666443
No 171
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.34 E-value=1.7e-06 Score=79.99 Aligned_cols=126 Identities=16% Similarity=0.216 Sum_probs=77.6
Q ss_pred hhhcccCchHHHHHHHHHHccchhchHHHHHhcccc--cCCCCEEEEecCCchHHHHHHHHHC----CCCeEEeccc-hh
Q 022515 92 WEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDV--FEGLNSLVDVGGGIGTAAKAIAKAF----PKLECTCFDL-PH 164 (296)
Q Consensus 92 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vLDvGgG~G~~~~~l~~~~----p~~~~~~~D~-~~ 164 (296)
|+-+++++.....|.+++.. .+.+..... -.+...|+|||||+|-++...+++. ...+++.++- |.
T Consensus 153 Ye~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 153 YEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp HHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred HhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 45555666666666665432 222221100 1135789999999999987766653 3468999997 65
Q ss_pred HhhccC----C--CCCCeeEEeccCCC-CCC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEE
Q 022515 165 VVNGLD----S--DLANLKYVGGDMFE-AIS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKV 227 (296)
Q Consensus 165 ~~~~a~----~--~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~l 227 (296)
++...+ + ..++|+++.+|+.+ ..| .+|++++-..=.....|-..+.|..+.+.|+| ||.+
T Consensus 226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~ 293 (448)
T PF05185_consen 226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGIM 293 (448)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCEE
Confidence 443321 1 67999999999999 666 59999886654333444556778889999999 6543
No 172
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.32 E-value=4.4e-06 Score=76.20 Aligned_cols=98 Identities=9% Similarity=0.031 Sum_probs=69.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CC-CCeeEEeccCCCC---C---C-cccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DL-ANLKYVGGDMFEA---I---S-PADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~D~~~~---~---p-~~D~v 193 (296)
.++.+|||+|||+|.++++.+.. ...+++.+|+ +.+++.+++ .. ++++++.+|.++. . . .||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 35689999999999998876643 3458999999 899988876 22 4899999999872 1 2 49999
Q ss_pred EehhhhccCCc--------hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 194 LLKWILHDWND--------EECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 194 ~~~~vlh~~~d--------~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
++.=-- .-.. ..-..+++.+.+.|+| ||.++.+.
T Consensus 298 ilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~s 339 (396)
T PRK15128 298 VMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFS 339 (396)
T ss_pred EECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 985211 0011 1223556678899999 88877655
No 173
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.5e-06 Score=69.60 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=54.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCCccceeEeh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAISPADAVLLK 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p~~D~v~~~ 196 (296)
.+.+|+|+|||||.+++..+-..| .+++++|+ |+.++.+++ ..+++.|+..|..+-...+|.++++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence 457899999999999988777644 58999999 999988876 6789999999998855568877774
No 174
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.29 E-value=3e-06 Score=74.76 Aligned_cols=137 Identities=13% Similarity=0.169 Sum_probs=90.3
Q ss_pred hhhhcCCCchhhcccCchHHHHH--HHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC----CCCe
Q 022515 83 FDTAHGKTLWEYAGDEPKLNNFF--NEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF----PKLE 156 (296)
Q Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~f--~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~----p~~~ 156 (296)
|+...|..+|+-+.+.|++.-.- ...+.. -...+...+ .++.+|+|+|||+|.=...|++.. ...+
T Consensus 35 ~YD~~Gs~LFe~It~lpEYYptr~E~~iL~~----~~~~Ia~~i----~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~ 106 (319)
T TIGR03439 35 LYDDEGLKLFEEITYSPEYYLTNDEIEILKK----HSSDIAASI----PSGSMLVELGSGNLRKVGILLEALERQKKSVD 106 (319)
T ss_pred hhcchHHHHHHHHHcCCccCChHHHHHHHHH----HHHHHHHhc----CCCCEEEEECCCchHHHHHHHHHHHhcCCCce
Confidence 34444666777666655432100 111111 123444433 355689999999999888777765 3468
Q ss_pred EEeccc-hhHhhccCC-----CCCCeeE--EeccCCCC---CC------ccce-eEehhhhccCCchHHHHHHHHHHH-h
Q 022515 157 CTCFDL-PHVVNGLDS-----DLANLKY--VGGDMFEA---IS------PADA-VLLKWILHDWNDEECVKILKKCKE-A 217 (296)
Q Consensus 157 ~~~~D~-~~~~~~a~~-----~~~ri~~--~~~D~~~~---~p------~~D~-v~~~~vlh~~~d~~~~~iL~~~~~-a 217 (296)
++.+|+ .+.++.+.+ ....+++ +++||.+. .+ ...+ .++.+.+.+++++++..+|+++++ .
T Consensus 107 Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~ 186 (319)
T TIGR03439 107 YYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATA 186 (319)
T ss_pred EEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhh
Confidence 999999 678876654 2244555 78998662 11 1344 455779999999999999999999 9
Q ss_pred cccCCCCcEEEEE
Q 022515 218 ITSDGKKGKVIII 230 (296)
Q Consensus 218 L~p~~~gG~lli~ 230 (296)
|+| |+.++|.
T Consensus 187 l~~---~d~lLiG 196 (319)
T TIGR03439 187 LSP---SDSFLIG 196 (319)
T ss_pred CCC---CCEEEEe
Confidence 999 7877774
No 175
>PRK00536 speE spermidine synthase; Provisional
Probab=98.28 E-value=3.7e-06 Score=72.07 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=68.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCCCC-CccceeEehh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFEAI-SPADAVLLKW 197 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~~~-p~~D~v~~~~ 197 (296)
+++++||=||||.|..++++++. |. +++.+|+ ++|++.+++ ...|++++.. +.+.. ..||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 46799999999999999999986 54 9999999 999998887 4788888862 32222 3599999864
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
. .+ ....+.++++|+| ||.++.
T Consensus 148 ~----~~---~~fy~~~~~~L~~---~Gi~v~ 169 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKE---DGVFIS 169 (262)
T ss_pred C----CC---hHHHHHHHHhcCC---CcEEEE
Confidence 2 22 3678999999999 666554
No 176
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.28 E-value=2.5e-06 Score=73.81 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=75.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCCc-cceeEehhhhcc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AISP-ADAVLLKWILHD 201 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p~-~D~v~~~~vlh~ 201 (296)
.++.|||||||+|-++.--+.+- ..++..++-.+|.+.|++ ..+||.+++|-+.+ ++|. .|+++.--.-..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 35789999999999997666653 447888998999999887 68999999999999 8884 999988544444
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEE
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVI 228 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~ll 228 (296)
.-.+...+-.-.+++.|+| .|+++
T Consensus 256 L~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hhhHHHHHHHHHHHhhcCC---CCccc
Confidence 4566666666678899999 78776
No 177
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.27 E-value=4.7e-06 Score=77.35 Aligned_cols=91 Identities=22% Similarity=0.358 Sum_probs=65.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC-----C-C-ccceeE
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA-----I-S-PADAVL 194 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~-----~-p-~~D~v~ 194 (296)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|++ ..++++|+.+|+.+. . . .+|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566799999999999999999874 48999999 999988876 346899999998651 1 1 389988
Q ss_pred ehhhhccCCchH-HHHHHHHHHHhcccCCCCcEEEE
Q 022515 195 LKWILHDWNDEE-CVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 195 ~~~vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli 229 (296)
+ +-|... ...+++.+.+ ++| ++.+++
T Consensus 368 ~-----dPPr~G~~~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 L-----DPPRKGCAAEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred E-----CcCCCCCCHHHHHHHHh-cCC---CEEEEE
Confidence 7 223221 2355665543 777 565555
No 178
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.26 E-value=2.3e-06 Score=70.68 Aligned_cols=97 Identities=11% Similarity=0.143 Sum_probs=65.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---C-ccceeEehhhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---S-PADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---p-~~D~v~~~~vl 199 (296)
...+|||+|||+|.+++.++.+. ..+++++|. +..++.+++ ..++++++.+|+++.. . .||+|++.=-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45699999999999999766665 368999999 888877765 2457999999987622 2 49999984322
Q ss_pred ccCCchHHHHHHHHHHHh--cccCCCCcEEEEEeeee
Q 022515 200 HDWNDEECVKILKKCKEA--ITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~a--L~p~~~gG~lli~e~~~ 234 (296)
+ ..-...+++.+... |+| ++++++|...
T Consensus 132 ~---~g~~~~~l~~l~~~~~l~~----~~iv~ve~~~ 161 (199)
T PRK10909 132 R---KGLLEETINLLEDNGWLAD----EALIYVESEV 161 (199)
T ss_pred C---CChHHHHHHHHHHCCCcCC----CcEEEEEecC
Confidence 1 11122344544443 677 4566666543
No 179
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.25 E-value=1.5e-06 Score=74.38 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=74.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---C-CC-cccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---A-IS-PADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~-~p-~~D~v 193 (296)
+++.+||=||+|.|..+.++++..+..+++++|+ |.+++.+++ ..+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4678999999999999999987766779999999 999999887 25799999999865 2 33 59999
Q ss_pred EehhhhccCCchH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 194 LLKWILHDWNDEE--CVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 194 ~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
++-..--..+... ..++++.+++.|+| ||.+++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 9843221111111 35889999999999 66665544
No 180
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.25 E-value=3.3e-06 Score=75.06 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=53.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--C-CccceeEeh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--I-SPADAVLLK 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~-p~~D~v~~~ 196 (296)
++.+|||+|||+|.++..+++. ..+++++|. +.+++.|++ ..++++|+.+|+.+ . . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4579999999999999999985 568999999 999988875 23679999999976 2 2 248999884
No 181
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.24 E-value=9.6e-06 Score=63.51 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=91.0
Q ss_pred hhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-C----
Q 022515 114 WLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A---- 186 (296)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~---- 186 (296)
.+++..+....+ +..+.-||++|.|||.++.+++++- +.-..+.++. ++......+..+.++++.||.+. .
T Consensus 34 s~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 34 SILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 345566666666 6677899999999999999998863 5556777877 76665554456667789999886 3
Q ss_pred -C--CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 187 -I--SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 187 -~--p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
. +.||.|++.--+-.+|-....++|+.+...|.+ ||.++-+..-
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 2 249999999988899998899999999999999 8888877764
No 182
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.23 E-value=1e-05 Score=67.08 Aligned_cols=125 Identities=16% Similarity=0.181 Sum_probs=86.8
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--c-cceeEehhhhccCC
Q 022515 134 LVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--P-ADAVLLKWILHDWN 203 (296)
Q Consensus 134 vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--~-~D~v~~~~vlh~~~ 203 (296)
|.||||-+|.+.+.|+++...-+++..|+ +.-++.|++ ..++|++..+|-++.++ . .|+|++..+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999987779999999 888888876 68999999999888543 3 788888654 4
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEE
Q 022515 204 DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII 283 (296)
Q Consensus 204 d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 283 (296)
-....+||.+....++. ..++++ -+. .....+++||.+.||.++.=.
T Consensus 77 G~lI~~ILe~~~~~~~~---~~~lIL-qP~-----------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS---AKRLIL-QPN-----------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT-----EEEE-EES-----------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc---CCeEEE-eCC-----------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 55667888888777664 233333 221 045688999999999987644
Q ss_pred Ec---CCcceEEEEe
Q 022515 284 PI---LGLRSLIEVY 295 (296)
Q Consensus 284 ~~---~~~~~vi~~~ 295 (296)
-+ +-++.||.+.
T Consensus 124 lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 124 LVEENGRFYEIIVAE 138 (205)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEeECCEEEEEEEEE
Confidence 43 2345566553
No 183
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.23 E-value=3.1e-06 Score=71.34 Aligned_cols=76 Identities=17% Similarity=0.390 Sum_probs=64.7
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI 187 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~ 187 (296)
+...+++..+ .++...||+||.|||.++..++++ +.+++.+++ |.++...++ ...+.++..||+++ ++
T Consensus 46 v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 4556666666 788899999999999999999999 678999998 888876654 46899999999999 88
Q ss_pred CccceeEe
Q 022515 188 SPADAVLL 195 (296)
Q Consensus 188 p~~D~v~~ 195 (296)
|-+|.++.
T Consensus 122 P~fd~cVs 129 (315)
T KOG0820|consen 122 PRFDGCVS 129 (315)
T ss_pred cccceeec
Confidence 98998887
No 184
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.21 E-value=7.5e-06 Score=68.89 Aligned_cols=137 Identities=15% Similarity=0.077 Sum_probs=83.9
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhc-cCCCCCCee-EEeccCCC--------CC
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNG-LDSDLANLK-YVGGDMFE--------AI 187 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~ri~-~~~~D~~~--------~~ 187 (296)
.+++.++- ...+.++||+|||+|.++..+++. +..+++++|. +.++.. .+ ...|+. +...|+.. ++
T Consensus 65 ~~l~~~~~-~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~-~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 65 EALEEFNI-DVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLR-QDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHhcCC-CCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHh-cCCCeeEeecCCcccCCHhHcCCCc
Confidence 44444441 135679999999999999999986 3458999999 656654 33 344433 33334432 12
Q ss_pred CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCcccc----
Q 022515 188 SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTER---- 263 (296)
Q Consensus 188 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r---- 263 (296)
+.+|+.+++..+ +|..+.++|+| |-.++++.+-+.-... .. .-+|-.+
T Consensus 142 ~~~DvsfiS~~~----------~l~~i~~~l~~---~~~~~L~KPqFE~~~~---------~~------~~~giv~~~~~ 193 (228)
T TIGR00478 142 ATFDVSFISLIS----------ILPELDLLLNP---NDLTLLFKPQFEAGRE---------KK------NKKGVVRDKEA 193 (228)
T ss_pred eeeeEEEeehHh----------HHHHHHHHhCc---CeEEEEcChHhhhcHh---------hc------CcCCeecCHHH
Confidence 247888877543 47788889997 5555555433321110 00 0122222
Q ss_pred ---CHHHHHHHHHhcCCceeEEEEcC
Q 022515 264 ---DEKEWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 264 ---t~~e~~~ll~~aGf~~~~~~~~~ 286 (296)
-.+++...+.+.||++..+.+.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 194 IALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHHHHHHcCCCeEeeEEECC
Confidence 44677778888899988887654
No 185
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.19 E-value=1.9e-06 Score=72.30 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=71.2
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CC-CCeeEEeccCCC--C--CC--ccceeEehhhh
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DL-ANLKYVGGDMFE--A--IS--PADAVLLKWIL 199 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~-~ri~~~~~D~~~--~--~p--~~D~v~~~~vl 199 (296)
..+||||||.|.++.++++++|+..++++++ ..++..+.+ .. .++.++++|... + .+ ..|-|++.+-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999999 666655543 33 389999999876 2 22 35666663211
Q ss_pred ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 200 HDWNDEE-------CVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 200 h~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
-|+... ...+|+.+.+.|+| ||.|.+..
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence 133221 14789999999999 89888765
No 186
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.19 E-value=3.5e-06 Score=73.70 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=71.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWIL 199 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~vl 199 (296)
-.+++|||||||+|-+++--+++. ..++.++|-..+++.|++ ..+.|++..|.+.+ .+| ..|+|++-|.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 456899999999999999877776 568999998888887766 67889999998888 555 59999987766
Q ss_pred ccCCchHH-HHHHHHHHHhcccCCCCcEEE
Q 022515 200 HDWNDEEC-VKILKKCKEAITSDGKKGKVI 228 (296)
Q Consensus 200 h~~~d~~~-~~iL~~~~~aL~p~~~gG~ll 228 (296)
+..=-+.. ..+|-.=-+.|+| ||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 55433322 2333333467898 77654
No 187
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.08 E-value=1.3e-05 Score=65.90 Aligned_cols=142 Identities=18% Similarity=0.244 Sum_probs=90.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCC--eeEEeccCCC-CCC--ccceeEehhhhcc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLAN--LKYVGGDMFE-AIS--PADAVLLKWILHD 201 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r--i~~~~~D~~~-~~p--~~D~v~~~~vlh~ 201 (296)
+....++|||||-|+...++.... --+.+..|. ..|++.++. ..+. +....+|-.. ++. .+|+++.+..+|.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 345689999999999999999885 337888998 789988876 3333 3445566554 444 4999999999985
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCcccc------CHHHHHHHHHhc
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTER------DEKEWTKLFTYA 275 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r------t~~e~~~ll~~a 275 (296)
.+|- ..-+.+|+.+||| +| ++|....-.+. ..+.....-+--+-.-||-.. ...++-.+|..|
T Consensus 150 ~NdL--Pg~m~~ck~~lKP---Dg-~FiasmlggdT-----LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 150 TNDL--PGSMIQCKLALKP---DG-LFIASMLGGDT-----LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hccC--chHHHHHHHhcCC---Cc-cchhHHhcccc-----HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc
Confidence 5543 3568899999999 55 34443332221 111111111111111233211 346788999999
Q ss_pred CCceeEE
Q 022515 276 GFSDYKI 282 (296)
Q Consensus 276 Gf~~~~~ 282 (296)
||....+
T Consensus 219 GF~m~tv 225 (325)
T KOG2940|consen 219 GFSMLTV 225 (325)
T ss_pred Cccccee
Confidence 9986654
No 188
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.06 E-value=8.4e-06 Score=69.37 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=77.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND 204 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d 204 (296)
..+..++|+|||.|.+.. .+|.+-.++.|+ -..+..+++ .+.......|+.+ +.+ .+|..+...++||+..
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~-~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR-SGGDNVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhcccccc-CCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 346789999999998863 358889999999 677777773 2222566778888 554 4999999999999985
Q ss_pred h-HHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 205 E-ECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 205 ~-~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
. ....+++++.+.++| ||..+|.-...
T Consensus 119 ~~RR~~~l~e~~r~lrp---gg~~lvyvwa~ 146 (293)
T KOG1331|consen 119 RERRERALEELLRVLRP---GGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHHhcC---CCceEEEEehh
Confidence 4 456899999999999 99988776543
No 189
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.06 E-value=9.3e-06 Score=70.85 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=63.0
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-C--CCCeeEEeccCCC-C--C
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-D--LANLKYVGGDMFE-A--I 187 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-~--~~ri~~~~~D~~~-~--~ 187 (296)
+..++++.+. ..++..+||.+||.|..+..+++.+| +.+++++|. |.+++.+++ . .+|++++.+||.+ . .
T Consensus 7 ll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 7 LLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 3456777776 56678999999999999999999986 789999999 999999876 2 3689999999876 1 1
Q ss_pred ----CccceeEe
Q 022515 188 ----SPADAVLL 195 (296)
Q Consensus 188 ----p~~D~v~~ 195 (296)
+.+|.|++
T Consensus 85 ~~~~~~vDgIl~ 96 (296)
T PRK00050 85 AEGLGKVDGILL 96 (296)
T ss_pred HcCCCccCEEEE
Confidence 14777766
No 190
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.97 E-value=1.3e-05 Score=72.85 Aligned_cols=90 Identities=16% Similarity=0.133 Sum_probs=63.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--C-CccceeEehhhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--I-SPADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~-p~~D~v~~~~vl 199 (296)
+..+|||+|||+|.++..++.. ..+++++|. +.+++.|++ ..++++|..+|+.+ . . ..||+|++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D--- 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN--- 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC---
Confidence 4579999999999999999864 568999999 888887775 33589999999865 1 2 248998883
Q ss_pred ccCCchH-HHHHHHHHHHhcccCCCCcEEEEE
Q 022515 200 HDWNDEE-CVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 200 h~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
-|... ..++++.+. .++| ++.+++.
T Consensus 308 --PPr~G~~~~~l~~l~-~~~p---~~ivyvs 333 (374)
T TIGR02085 308 --PPRRGIGKELCDYLS-QMAP---KFILYSS 333 (374)
T ss_pred --CCCCCCcHHHHHHHH-hcCC---CeEEEEE
Confidence 22221 124455554 3677 5544443
No 191
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.97 E-value=4.5e-05 Score=63.09 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=90.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCC---CCC--ccceeE
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFE---AIS--PADAVL 194 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~---~~p--~~D~v~ 194 (296)
.+.+.+|||.-.|-|..+++-+++- ...++-++- |.|++.|.- ...+|+++.||..+ +++ .||+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 3467899999999999999988883 237888888 999988864 34579999999887 344 388875
Q ss_pred ehhhhccCC------chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515 195 LKWILHDWN------DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW 268 (296)
Q Consensus 195 ~~~vlh~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~ 268 (296)
||-| .--..++-++++|.|+| ||+++-.-... ... ..-.| -+...
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG~P---g~r------yrG~d------------~~~gV 261 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVGNP---GKR------YRGLD------------LPKGV 261 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeCCC---Ccc------cccCC------------hhHHH
Confidence 4433 12345789999999999 99987543211 100 00111 34678
Q ss_pred HHHHHhcCCceeEEEEc
Q 022515 269 TKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 269 ~~ll~~aGf~~~~~~~~ 285 (296)
.+.|+++||.+++...-
T Consensus 262 a~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 262 AERLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHHHhcCceeeeeehh
Confidence 89999999998776543
No 192
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.97 E-value=2.4e-05 Score=73.82 Aligned_cols=98 Identities=13% Similarity=0.230 Sum_probs=71.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CCC--ccceeEehhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AIS--PADAVLLKWI 198 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~p--~~D~v~~~~v 198 (296)
....+||||||.|.++.++++++|+..++++|+ ...+..+.+ ...++.+.++|+.. .++ ..|.+++.+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457899999999999999999999999999999 655544332 45678888887642 244 3777777432
Q ss_pred hccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 199 LHDWNDEE-------CVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 199 lh~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
= -|+... ...+|+.+++.|+| ||.+.+..
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 1 133221 24789999999999 99887755
No 193
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.94 E-value=2.2e-05 Score=64.44 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=65.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C--C-c-cceeEe
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I--S-P-ADAVLL 195 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~--p-~-~D~v~~ 195 (296)
.+.+|||++||+|.++.+++.+.. .+++.+|. +.+++.+++ ..++++++.+|.++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 357899999999999999999864 37999999 888876655 345899999998651 1 1 2 677766
Q ss_pred hhhhccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeeeeC
Q 022515 196 KWILHDWNDEECVKILKKCKE--AITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~e~~~~ 235 (296)
.=-.. ......++..+.. .+++ +.++|+|....
T Consensus 128 DPPy~---~~~~~~~l~~l~~~~~l~~----~~iiv~E~~~~ 162 (189)
T TIGR00095 128 DPPFF---NGALQALLELCENNWILED----TVLIVVEEDRE 162 (189)
T ss_pred CcCCC---CCcHHHHHHHHHHCCCCCC----CeEEEEEecCC
Confidence 22111 1112234444433 4665 66777776543
No 194
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00037 Score=55.53 Aligned_cols=66 Identities=15% Similarity=0.351 Sum_probs=51.0
Q ss_pred CCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCC--CccceeEeh
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAI--SPADAVLLK 196 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~--p~~D~v~~~ 196 (296)
..-++|||||+|..+..|++.. |+..+...|+ |..++...+ ...+++.+..|+.+.+ .+.|+.+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEEC
Confidence 5789999999999998888754 7888999999 888877544 4555778888888732 347777664
No 195
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=6.6e-05 Score=63.96 Aligned_cols=84 Identities=12% Similarity=0.283 Sum_probs=62.2
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCc--
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISP-- 189 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~-- 189 (296)
.+.+++... ..+..+|++||+|.|.++..|+++.. +++++++ +..++..++ ..++++++.+|+.+ +++.
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 456666666 56688999999999999999999954 6777877 777776665 47999999999999 7774
Q ss_pred -cceeEehhhhccCCch
Q 022515 190 -ADAVLLKWILHDWNDE 205 (296)
Q Consensus 190 -~D~v~~~~vlh~~~d~ 205 (296)
++.|+. +.=++.+.+
T Consensus 95 ~~~~vVa-NlPY~Issp 110 (259)
T COG0030 95 QPYKVVA-NLPYNISSP 110 (259)
T ss_pred CCCEEEE-cCCCcccHH
Confidence 344443 444444443
No 196
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=97.86 E-value=7.5e-06 Score=51.55 Aligned_cols=37 Identities=54% Similarity=0.993 Sum_probs=30.6
Q ss_pred HHHHHHHHcCcchhcccCC-CCCCHHHHHHHcC-CCCcc
Q 022515 30 MTLKCAIQLGIPDIISKHG-KPMTLNELVSALT-INPSK 66 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~-~~~t~~eLA~~~~-~~~~~ 66 (296)
.+|++|+||||||.|..++ +|.|++|||.++. .++..
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~ 39 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSA 39 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcch
Confidence 4799999999999998865 7999999999999 66553
No 197
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.79 E-value=6.3e-05 Score=68.37 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=70.1
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC--C-CCccceeEehhhhcc
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE--A-ISPADAVLLKWILHD 201 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~--~-~p~~D~v~~~~vlh~ 201 (296)
..+|||++||+|.+++.++...+..+++++|+ |..++.+++ ..+.+++..+|... . ...||+|++.= .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999998877668999999 888887765 23456788888765 2 23599999832 1
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
.....++..+.+.+++ ||.+++.
T Consensus 135 ---Gs~~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred ---CCcHHHHHHHHHHhcC---CCEEEEE
Confidence 1224677887788898 8988888
No 198
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.75 E-value=5.3e-05 Score=64.09 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=52.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC----CCC----ccceeE
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE----AIS----PADAVL 194 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~----~~p----~~D~v~ 194 (296)
.+..+||+|||+|..+..++...|..+++.+|. +..+..|.+ ..+|+.++..++.. +.+ .+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 345899999999999999999999999999999 777665543 78999988555443 222 378777
Q ss_pred eh
Q 022515 195 LK 196 (296)
Q Consensus 195 ~~ 196 (296)
++
T Consensus 228 sN 229 (328)
T KOG2904|consen 228 SN 229 (328)
T ss_pred cC
Confidence 63
No 199
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.73 E-value=6.1e-05 Score=61.31 Aligned_cols=90 Identities=21% Similarity=0.311 Sum_probs=68.0
Q ss_pred EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhc---cCC--CCCCeeEEeccCCC-CC-CccceeEehhhhccCCc
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNG---LDS--DLANLKYVGGDMFE-AI-SPADAVLLKWILHDWND 204 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~--~~~ri~~~~~D~~~-~~-p~~D~v~~~~vlh~~~d 204 (296)
+++|||.|.|.-++-|+=.+|+.+++.+|. ..=+.. +.+ ..+++++..+...+ .. ..||+|+++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999997 443332 222 45689999998887 33 3599999987641
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
...++.-+...+++ ||+++..-
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEc
Confidence 33677888888999 89888765
No 200
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.69 E-value=0.00018 Score=63.28 Aligned_cols=93 Identities=24% Similarity=0.425 Sum_probs=72.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC------------CCCCeeEEeccCCC-C--C-Ccc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS------------DLANLKYVGGDMFE-A--I-SPA 190 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~D~~~-~--~-p~~ 190 (296)
++.+++|-+|||.|-.++++++ ||+ -+++.+|+ |.|++.++. ...|++++..|.++ - - ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5668999999999999998876 684 58999999 999998874 47899999999887 2 1 249
Q ss_pred ceeEehhhhccCCchH--------HHHHHHHHHHhcccCCCCcEEEEE
Q 022515 191 DAVLLKWILHDWNDEE--------CVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~--------~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
|+++. |++|+. ..++-+-+++.|++ +|.+++-
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQ 406 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQ 406 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEe
Confidence 99987 445443 24677778889998 6766553
No 201
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.68 E-value=1.2e-05 Score=73.66 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=66.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEec---cc-hhHhhccCCCCCCeeEEeccCC--C-CCCc--cceeEehhhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCF---DL-PHVVNGLDSDLANLKYVGGDMF--E-AISP--ADAVLLKWIL 199 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~ri~~~~~D~~--~-~~p~--~D~v~~~~vl 199 (296)
...+++||||||+|.++..|+++ ++....+ |. +..++.|.+ -.|-..-+-+- . |+|. ||+|-++.++
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale--RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE--RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh--cCcchhhhhhccccccCCccchhhhhccccc
Confidence 34579999999999999999998 4433222 33 334444431 11332322221 2 6663 9999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
..|...+- .+|-++-|+|+| ||.++....-
T Consensus 192 i~W~~~~g-~~l~evdRvLRp---GGyfv~S~pp 221 (506)
T PF03141_consen 192 IPWHPNDG-FLLFEVDRVLRP---GGYFVLSGPP 221 (506)
T ss_pred ccchhccc-ceeehhhhhhcc---CceEEecCCc
Confidence 99987763 588999999999 8887765543
No 202
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.67 E-value=2e-05 Score=63.91 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=84.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec-cCCCCCCccceeEehhhhccCCchHH
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG-DMFEAISPADAVLLKWILHDWNDEEC 207 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~-D~~~~~p~~D~v~~~~vlh~~~d~~~ 207 (296)
.+.++||+|.|.|..+..++..+.+ +..-++ ..|..+.++ .+.++... +..+.--++|+|.+.++|.-..++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k--k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK--KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh--cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--
Confidence 4579999999999999888877653 444455 566666553 11222111 111111259999999999544444
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeeeCCCC-CCCchhhhhhhhhhhhhhhcCcccc--CHHHHHHHHHhcCCceeEEEE
Q 022515 208 VKILKKCKEAITSDGKKGKVIIIDMIRENKK-GDDKSIETQLFFDMLMMVLLTGTER--DEKEWTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 208 ~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~r--t~~e~~~ll~~aGf~~~~~~~ 284 (296)
-++|+.++.+|+|. .|++++.= +.|-.. .+ ......+..-.-....+|+.+ ....+.++|+.+||.+.....
T Consensus 186 ~kLL~Di~~vl~ps--ngrvivaL-VLP~~hYVE--~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTr 260 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPS--NGRVIVAL-VLPYMHYVE--TNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTR 260 (288)
T ss_pred HHHHHHHHHHhccC--CCcEEEEE-Eecccceee--cCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhc
Confidence 48999999999994 67765543 222100 00 000000000000112345533 345678999999999887776
Q ss_pred cC
Q 022515 285 IL 286 (296)
Q Consensus 285 ~~ 286 (296)
.|
T Consensus 261 lP 262 (288)
T KOG3987|consen 261 LP 262 (288)
T ss_pred CC
Confidence 54
No 203
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.65 E-value=2.6e-05 Score=66.57 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=58.0
Q ss_pred EEeccCCCC--C------Cc-cceeEehhhhccCC--chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhh
Q 022515 178 YVGGDMFEA--I------SP-ADAVLLKWILHDWN--DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET 246 (296)
Q Consensus 178 ~~~~D~~~~--~------p~-~D~v~~~~vlh~~~--d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~ 246 (296)
++..|..++ + |+ ||++++..+|.... .+.-.+.++++.++||| ||.+++....-..
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l~~t---------- 204 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVLGST---------- 204 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEESS-S----------
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEcCce----------
Confidence 567788772 2 33 99999999987643 33456889999999999 8888887753211
Q ss_pred hhhhhhhhhhhcCc-----cccCHHHHHHHHHhcCCceeEEEE
Q 022515 247 QLFFDMLMMVLLTG-----TERDEKEWTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 247 ~~~~~~~~~~~~~g-----~~rt~~e~~~ll~~aGf~~~~~~~ 284 (296)
++ ..|+ -..+.+.+++.++++||.+.+...
T Consensus 205 --~Y------~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 205 --YY------MVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp --EE------EETTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred --eE------EECCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 00 1122 233889999999999999988875
No 204
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=0.00042 Score=57.55 Aligned_cols=120 Identities=21% Similarity=0.256 Sum_probs=82.9
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHh---hccCC--CCCCeeEEeccCCC-C-CCc-cceeEehhhhcc
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVV---NGLDS--DLANLKYVGGDMFE-A-ISP-ADAVLLKWILHD 201 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~---~~a~~--~~~ri~~~~~D~~~-~-~p~-~D~v~~~~vlh~ 201 (296)
..+++|||.|.|.-++-++=.+|++++|.+|. ..=+ +.+.+ ..++++++.+...+ . .+. ||+|+++.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 58999999999999999999999999999996 4333 33332 56779999988877 2 235 9999998754
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK 281 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 281 (296)
....++.-+...+++ ||++++.-... ..+ ...+.+.....-|+++..
T Consensus 146 ----~L~~l~e~~~pllk~---~g~~~~~k~~~--------------~~~------------e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 146 ----SLNVLLELCLPLLKV---GGGFLAYKGLA--------------GKD------------ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred ----chHHHHHHHHHhccc---CCcchhhhHHh--------------hhh------------hHHHHHHHHHhhcCcEEE
Confidence 122455556666787 77654322110 000 234556667777888888
Q ss_pred EEEc
Q 022515 282 IIPI 285 (296)
Q Consensus 282 ~~~~ 285 (296)
+...
T Consensus 193 ~~~~ 196 (215)
T COG0357 193 VFSL 196 (215)
T ss_pred EEEe
Confidence 7765
No 205
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.59 E-value=4.5e-05 Score=60.54 Aligned_cols=63 Identities=24% Similarity=0.474 Sum_probs=47.4
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---CC--c-cceeEeh
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---IS--P-ADAVLLK 196 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~p--~-~D~v~~~ 196 (296)
..|+|+-||.|..++++++.+. +++.+|+ |.-++.++. ..+||+++.+|+++- .. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3699999999999999999964 7899999 888877765 478999999999872 22 2 7999873
No 206
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.58 E-value=0.00018 Score=56.15 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=60.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHH----CCCCeEEeccc-hhHhhccCC--------CCCCeeEEeccCCCC--CCccce
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKA----FPKLECTCFDL-PHVVNGLDS--------DLANLKYVGGDMFEA--ISPADA 192 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~D~~~~--~p~~D~ 192 (296)
..+..+|+|+|||.|+++..|+.. .++++++++|. +..++.+.+ ...++++..+++... ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356789999999999999999882 27899999999 777776654 236777777776652 224677
Q ss_pred eEehhhhccCCchHHHHHHHHHHH
Q 022515 193 VLLKWILHDWNDEECVKILKKCKE 216 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~ 216 (296)
++.-|.--+.+ ..+|+.+.+
T Consensus 103 ~vgLHaCG~Ls----~~~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLS----DRALRLFIR 122 (141)
T ss_pred EEEeecccchH----HHHHHHHHH
Confidence 77755543333 355666655
No 207
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.57 E-value=0.00017 Score=65.05 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=44.5
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE 185 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~ 185 (296)
.+|||++||+|.++..+++... +++++|. +++++.+++ ..++++|+.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999988863 8999999 899988876 34579999999865
No 208
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.54 E-value=0.00097 Score=53.76 Aligned_cols=137 Identities=17% Similarity=0.134 Sum_probs=84.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCC------------CCCCeeEEeccCCC-CCC-ccce
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDS------------DLANLKYVGGDMFE-AIS-PADA 192 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~------------~~~ri~~~~~D~~~-~~p-~~D~ 192 (296)
++++.+|+|+=.|.|.++.-+.... |.-+++.+-..+...-+.. ...+.+.+..+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 7889999999999999998777653 3333433332233222111 23344444444444 223 3677
Q ss_pred eEehhhhccC-----CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515 193 VLLKWILHDW-----NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267 (296)
Q Consensus 193 v~~~~vlh~~-----~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 267 (296)
++....-|++ ....+.++.+.++++||| ||.++|.|+......... .... -...+..-
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---dt~~-----------~~ri~~a~ 188 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---DTIT-----------LHRIDPAV 188 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---hhhh-----------hcccChHH
Confidence 7664443333 244567899999999999 999888888766543321 1100 11226777
Q ss_pred HHHHHHhcCCceeE
Q 022515 268 WTKLFTYAGFSDYK 281 (296)
Q Consensus 268 ~~~ll~~aGf~~~~ 281 (296)
..+..+++||+...
T Consensus 189 V~a~veaaGFkl~a 202 (238)
T COG4798 189 VIAEVEAAGFKLEA 202 (238)
T ss_pred HHHHHHhhcceeee
Confidence 88889999998654
No 209
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.47 E-value=0.00016 Score=59.70 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=65.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC--CccceeEehhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI--SPADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~--p~~D~v~~~~v 198 (296)
..++.+|+|.-||.|.+++.+++..+..+++.+|+ |..++..++ ..++|....+|..+-. ..+|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 45678999999999999999999777889999999 988876655 6788999999988732 3489888854
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEE
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKV 227 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~l 227 (296)
|. .+..+|..+.+.+++ ||.+
T Consensus 178 ----p~-~~~~fl~~~~~~~~~---~g~i 198 (200)
T PF02475_consen 178 ----PE-SSLEFLDAALSLLKE---GGII 198 (200)
T ss_dssp ----TS-SGGGGHHHHHHHEEE---EEEE
T ss_pred ----hH-HHHHHHHHHHHHhcC---CcEE
Confidence 32 234688889999998 6543
No 210
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.45 E-value=0.0011 Score=53.53 Aligned_cols=104 Identities=18% Similarity=0.234 Sum_probs=71.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCCccceeEehhhhccC
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAISPADAVLLKWILHDW 202 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~ 202 (296)
.-.+++|||+|.|+|-.+++-++.- ...++.-|+ |...+..+- ..-.|.++..|...+.+.+|+++.+.++++-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 4467899999999999998877763 234555566 555544432 4566888888877755679999999998754
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~ 237 (296)
+ .+.+++. ..+.++. .|..++|.+...+.-
T Consensus 156 ~--~a~~l~~-~~~~l~~--~g~~vlvgdp~R~~l 185 (218)
T COG3897 156 T--EADRLIP-WKDRLAE--AGAAVLVGDPGRAYL 185 (218)
T ss_pred h--HHHHHHH-HHHHHHh--CCCEEEEeCCCCCCC
Confidence 4 4446677 5555544 177888877665543
No 211
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.44 E-value=0.00028 Score=56.48 Aligned_cols=95 Identities=19% Similarity=0.249 Sum_probs=73.2
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCCccceeEehhhhccCCc
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AISPADAVLLKWILHDWND 204 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh~~~d 204 (296)
..+.|+|.|+|-++.--+++ .-+++.++. |.....|.+ ..++++++.||..+ ++..+|+|+|-..=--+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 57999999999999755554 458899988 888877776 57889999999999 7878999988543222235
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+..+.+++.+.+-|+- +++++=.+
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~ 135 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQE 135 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHH
Confidence 5557889999998887 67776444
No 212
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.44 E-value=0.00019 Score=58.13 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=69.7
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------------CCCCeeEEeccCCCCCCc-cceeEehh
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------------DLANLKYVGGDMFEAISP-ADAVLLKW 197 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~D~~~~~p~-~D~v~~~~ 197 (296)
-.+.|||||-|.+++.|...||+--..++++ -.|.+..+. ...+|.+...+.+.-.|+ |.--.++-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 4699999999999999999999999999998 677665432 245577777766664444 33333444
Q ss_pred hhccCCchH-----------HHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 198 ILHDWNDEE-----------CVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 198 vlh~~~d~~-----------~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
.++.+||+- ...++.+..-+|++ ||.++.+..+
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv 185 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDV 185 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeH
Confidence 444455442 23567778888898 8988877643
No 213
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.44 E-value=0.0032 Score=51.95 Aligned_cols=119 Identities=12% Similarity=0.129 Sum_probs=88.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC---ccceeEehhhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS---PADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p---~~D~v~~~~vl 199 (296)
.+.++.||||-+|.+.+.|.+.+|...++..|+ +.-++.|.+ ..+||+...+|-+.++. ..|++++..+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 445699999999999999999999999999999 888877765 78999999999988542 3888887653
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCce
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSD 279 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~ 279 (296)
.-.-...||.+-.+-|+. --++++ - +. -...++++||.+.+|.+
T Consensus 95 ---GG~lI~~ILee~~~~l~~---~~rlIL-Q----Pn-------------------------~~~~~LR~~L~~~~~~I 138 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKG---VERLIL-Q----PN-------------------------IHTYELREWLSANSYEI 138 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcC---cceEEE-C----CC-------------------------CCHHHHHHHHHhCCcee
Confidence 444566778877777763 113222 1 10 04567888999999987
Q ss_pred eEEEEc
Q 022515 280 YKIIPI 285 (296)
Q Consensus 280 ~~~~~~ 285 (296)
..=+-+
T Consensus 139 ~~E~il 144 (226)
T COG2384 139 KAETIL 144 (226)
T ss_pred eeeeee
Confidence 654444
No 214
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.42 E-value=0.00032 Score=60.70 Aligned_cols=97 Identities=13% Similarity=0.256 Sum_probs=68.5
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCc-
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISP- 189 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~- 189 (296)
+++.+++.++ ..+...|+|||+|.|.++..|++.. .++++++. +..++..++ ..++++++.+|+++ +.+.
T Consensus 18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 3456666666 5678999999999999999999996 68999998 887777665 46899999999998 5443
Q ss_pred ---cceeEehhhhccCCchHHHHHHHHHHHhccc
Q 022515 190 ---ADAVLLKWILHDWNDEECVKILKKCKEAITS 220 (296)
Q Consensus 190 ---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p 220 (296)
-.+.+..+.=+ .-...++.++...-+.
T Consensus 94 ~~~~~~~vv~NlPy----~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 94 LKNQPLLVVGNLPY----NISSPILRKLLELYRF 123 (262)
T ss_dssp CSSSEEEEEEEETG----TGHHHHHHHHHHHGGG
T ss_pred hcCCceEEEEEecc----cchHHHHHHHhhcccc
Confidence 23444444333 2334567777664443
No 215
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.42 E-value=0.00048 Score=59.41 Aligned_cols=97 Identities=14% Similarity=0.256 Sum_probs=57.8
Q ss_pred CCCEEEEecCCchHHHH-HHHHHC-CCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCC-C--CCccceeEeh
Q 022515 130 GLNSLVDVGGGIGTAAK-AIAKAF-PKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFE-A--ISPADAVLLK 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~-~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~-~--~p~~D~v~~~ 196 (296)
.+.+|+=||+|.=-++. .+++.+ ++..++++|+ |+.++.+++ +..+++|+.+|..+ + ...||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 34699999999766554 444443 6788999999 998888866 47999999999876 3 4479999887
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
...- .+.++-.++|.++.+.++| |.+|++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 6553 2333446899999999999 7766654
No 216
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.41 E-value=0.0055 Score=54.24 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=85.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCC--C-ccceeEehhhhccCCc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAI--S-PADAVLLKWILHDWND 204 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~--p-~~D~v~~~~vlh~~~d 204 (296)
+.++.++|||||++|.++..++++ +.+++++|...+..... ..++|.+..+|.+... + ++|.+++--+.+ +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhh-CCCCEEEEeccCcccCCCCCCCCEEEEecccC---H
Confidence 457789999999999999999998 67999999755555444 6889999999988832 3 489999966542 2
Q ss_pred hHHHHHHHHHHHhcccCCCC-cEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc-eeEE
Q 022515 205 EECVKILKKCKEAITSDGKK-GKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS-DYKI 282 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~g-G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~-~~~~ 282 (296)
.++.+-+.+.+.. | .+-.|+..-.+..... ..... ..+.+.+.|.++|.. .+++
T Consensus 283 ---~rva~lm~~Wl~~---g~cr~aIfnLKlpmk~r~---~~v~~---------------~l~~i~~~l~~~g~~~~~~~ 338 (357)
T PRK11760 283 ---ARVAELMAQWLVN---GWCREAIFNLKLPMKKRY---EEVRQ---------------CLELIEEQLDENGINAQIQA 338 (357)
T ss_pred ---HHHHHHHHHHHhc---CcccEEEEEEEcCCCCCH---HHHHH---------------HHHHHHHHHHHcCCccceee
Confidence 2556666667765 2 2455665555433211 01000 223466777888873 3455
Q ss_pred EEcC
Q 022515 283 IPIL 286 (296)
Q Consensus 283 ~~~~ 286 (296)
.++.
T Consensus 339 khLy 342 (357)
T PRK11760 339 KQLY 342 (357)
T ss_pred eeee
Confidence 5554
No 217
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00011 Score=64.35 Aligned_cols=101 Identities=21% Similarity=0.360 Sum_probs=65.6
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CCCccceeEehhhhc
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AISPADAVLLKWILH 200 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~p~~D~v~~~~vlh 200 (296)
+.+|||||.|.|.-+.++-..+|.++ +++++. |..-+.... ...+......|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 45799999999999988888999885 666676 433222111 22233333444443 456556665555554
Q ss_pred cC----CchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 201 DW----NDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 201 ~~----~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
.+ ........++++...+.| ||.++|+|.-.
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGt 228 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGT 228 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCC
Confidence 43 233344588999999999 99999999643
No 218
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.39 E-value=0.00029 Score=63.77 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=44.1
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE 185 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~ 185 (296)
.+|||++||+|.++..+++... +++++|. +.+++.+++ ..++++|..+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988753 8999999 889887775 34589999999865
No 219
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00015 Score=55.47 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=51.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC--c-cceeEehhhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS--P-ADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p--~-~D~v~~~~vl 199 (296)
.+..+.|+|||.|.++. +-.+|. -.++++|+ |+.++.+.+ ..-++++++.|+.+..+ + ||.++++--+
T Consensus 48 Egkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 45789999999999994 334444 46899999 999988766 45667899999988433 3 8988885433
No 220
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.34 E-value=0.0024 Score=55.12 Aligned_cols=145 Identities=16% Similarity=0.128 Sum_probs=96.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC--------CCCCeeEEeccCCCCC------Cc-----
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS--------DLANLKYVGGDMFEAI------SP----- 189 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~D~~~~~------p~----- 189 (296)
.+...||.+|||-=.....+... +++++.-+|.|++++.-++ ...+.+++..|+..++ .+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34678999999998887766322 2588899999998875544 3578999999987422 12
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhh-hhhhhhhhhhhhcCc----cccC
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE-TQLFFDMLMMVLLTG----TERD 264 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g----~~rt 264 (296)
.-++++-.++.+++.+++.++|+.+.+...| |+ .+++|.+.+-.... ... ...... ......+ ...+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---gs-~l~~d~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~ 230 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP---GS-RLAFDYVRPLDGEW--RAGMRAPVYH--AARGVDGSGLVFGID 230 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC---Cc-EEEEEeccccchhH--HHHHHHHHHH--hhhcccccccccCCC
Confidence 3477888899999999999999999998877 55 45677665411110 000 000110 0000001 1236
Q ss_pred HHHHHHHHHhcCCceeEE
Q 022515 265 EKEWTKLFTYAGFSDYKI 282 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~~ 282 (296)
.+++.++|++.||+....
T Consensus 231 ~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 231 RADVAEWLAERGWRASEH 248 (260)
T ss_pred hhhHHHHHHHCCCeeecC
Confidence 799999999999998765
No 221
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.32 E-value=0.00078 Score=54.77 Aligned_cols=102 Identities=15% Similarity=0.184 Sum_probs=65.9
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCe---------EEeccc-hhHhhccCC------CCCCeeEEe
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLE---------CTCFDL-PHVVNGLDS------DLANLKYVG 180 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~------~~~ri~~~~ 180 (296)
+..++.... ++++..|+|-=||+|.++++-+...++.. +++.|+ +.+++.+++ ..+.|.+..
T Consensus 17 A~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 17 AAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 334444444 56778999999999999999888776666 899999 899887765 467799999
Q ss_pred ccCCC-CCC--ccceeEehhhhcc-CCc-hHH----HHHHHHHHHhccc
Q 022515 181 GDMFE-AIS--PADAVLLKWILHD-WND-EEC----VKILKKCKEAITS 220 (296)
Q Consensus 181 ~D~~~-~~p--~~D~v~~~~vlh~-~~d-~~~----~~iL~~~~~aL~p 220 (296)
.|+.+ +.+ .+|+|+..--.-. ... .+. ..+++.+.+.+++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 99998 633 4899888432111 111 111 3557777888875
No 222
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0044 Score=52.66 Aligned_cols=120 Identities=16% Similarity=0.216 Sum_probs=83.0
Q ss_pred HHHHHHHccchhc----hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC------
Q 022515 104 FFNEAMASDAWLA----TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS------ 171 (296)
Q Consensus 104 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------ 171 (296)
.|...|...++.+ ...++..++ ..++.+|++-|.|+|.++-++++.- |--+..-+|. ..-.+.|.+
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg 154 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG 154 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC
Confidence 3445555444432 334566666 7899999999999999999999975 6678888887 554555544
Q ss_pred CCCCeeEEeccCCC-CCC----ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 172 DLANLKYVGGDMFE-AIS----PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 172 ~~~ri~~~~~D~~~-~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
..+.+++...|... .++ .+|.|++ |+|.+- ..+-.++.+|+.. ||+++-+..+.
T Consensus 155 i~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~--g~r~csFSPCI 213 (314)
T KOG2915|consen 155 IGDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKDE--GGRLCSFSPCI 213 (314)
T ss_pred CCcceEEEEeecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhhc--CceEEeccHHH
Confidence 68999999999988 332 3899998 455443 3455666678872 55666555443
No 223
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.29 E-value=0.00039 Score=56.57 Aligned_cols=105 Identities=18% Similarity=0.152 Sum_probs=60.0
Q ss_pred HHHHhcccc-cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCCCCCCeeEEeccCCCC---------C
Q 022515 119 VMIHKCKDV-FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEA---------I 187 (296)
Q Consensus 119 ~~~~~~~~~-~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~---------~ 187 (296)
++.+.++.. ..+..++||+||++|.++..++++. +..+++++|+..+- ....+.+..+|+.++ .
T Consensus 11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----~~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----PLQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----S-TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred HHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----cccceeeeecccchhhHHHhhhhhc
Confidence 455555511 2245899999999999999999987 67899999994431 112334444444331 1
Q ss_pred ----CccceeEehhhhccC---------CchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 188 ----SPADAVLLKWILHDW---------NDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 188 ----p~~D~v~~~~vlh~~---------~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
..+|+|++--....- .-+-+...|.-+.+.|+| ||.+++--
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~ 139 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKV 139 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEe
Confidence 248998885421111 112233445555567898 77765533
No 224
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.28 E-value=0.0067 Score=52.25 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=89.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHh-------hc---cCC--------------------------
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVV-------NG---LDS-------------------------- 171 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~-------~~---a~~-------------------------- 171 (296)
+...+||-=|||.|.++-+++.+ +..+.+.+. -.|+ .. ..+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 34579999999999999999998 556666665 3332 11 000
Q ss_pred ---------CCCCeeEEeccCCC--CCC----ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 172 ---------DLANLKYVGGDMFE--AIS----PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 172 ---------~~~ri~~~~~D~~~--~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
..++++...|||.+ ..+ .+|+|+..+.+- .-+...+.|..|.+.||| ||..+=+-+..-.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh 207 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKP---GGYWINFGPLLYH 207 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhcc---CCEEEecCCcccc
Confidence 24578899999988 333 499998876663 344577999999999999 7744333322211
Q ss_pred CCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEE
Q 022515 237 KKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 284 (296)
.... . ......-+.+.+|+.++.+..||++++-..
T Consensus 208 ~~~~------------~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 208 FEPM------------S-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCC------------C-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1100 0 000012456999999999999999876544
No 225
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.23 E-value=0.00067 Score=52.75 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=44.2
Q ss_pred EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE 185 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~ 185 (296)
+++|||||.|.++..+++.+|..+++++|. |.+.+.+++ ...++++....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999999 888887765 22458887776665
No 226
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.21 E-value=0.0029 Score=49.05 Aligned_cols=96 Identities=20% Similarity=0.355 Sum_probs=65.0
Q ss_pred EEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCCCC--CC---eeEEeccCCC---CCC---ccceeEehhhhc
Q 022515 134 LVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDSDL--AN---LKYVGGDMFE---AIS---PADAVLLKWILH 200 (296)
Q Consensus 134 vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~--~r---i~~~~~D~~~---~~p---~~D~v~~~~vlh 200 (296)
++|+|||+|... .+....+. ..++++|. +.++..++... .. +.+..+|... ++. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999987 34444333 47888998 77776644311 22 5777777664 332 48999 544444
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
++.+ ....++++.+.++| +|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 4443 45789999999999 8888887765443
No 227
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.20 E-value=0.00065 Score=57.29 Aligned_cols=99 Identities=19% Similarity=0.167 Sum_probs=68.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC--ccceeEehhhhcc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS--PADAVLLKWILHD 201 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~ 201 (296)
..+.+|+|||||---++.-.....|+.++++.|+ ...++...+ ...+.++...|.....| .+|+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4578999999999999988888888999999999 788877655 67788888889999544 4999999999997
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
....+. ..-.++.+.+.- -.++|..+
T Consensus 184 le~q~~-g~g~~ll~~~~~----~~~vVSfP 209 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALRS----PHVVVSFP 209 (251)
T ss_dssp HHHHST-THHHHHHHHSCE----SEEEEEEE
T ss_pred HHHHhc-chHHHHHHHhCC----CeEEEecc
Confidence 765543 233344455542 35555443
No 228
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.16 E-value=0.00023 Score=52.51 Aligned_cols=91 Identities=16% Similarity=0.262 Sum_probs=40.2
Q ss_pred EEecCCchHHHHHHHHHCCCC---eEEeccc-hh---HhhccCC--CCCCeeEEeccCCCC---CC--ccceeEehhhhc
Q 022515 135 VDVGGGIGTAAKAIAKAFPKL---ECTCFDL-PH---VVNGLDS--DLANLKYVGGDMFEA---IS--PADAVLLKWILH 200 (296)
Q Consensus 135 LDvGgG~G~~~~~l~~~~p~~---~~~~~D~-~~---~~~~a~~--~~~ri~~~~~D~~~~---~p--~~D~v~~~~vlh 200 (296)
|+||+..|..+..+++..+.. +++++|. +. .-+..++ ..++++++.+|..+. .+ .+|++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999888876544 6899998 63 3333332 567899999998762 33 589998854 23
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
..+....-++.+.+.|+| ||.|++.|
T Consensus 80 --~~~~~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 234566789999999999 66666544
No 229
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0049 Score=50.66 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=71.7
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCCCCCCeeEEeccCCCC---------C
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEA---------I 187 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~---------~ 187 (296)
.++.+.+. .++++.+|+|+|+-.|.++..+++.. ++.+++++|+.++-. ...+.++.+|+..+ .
T Consensus 34 ~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 34 LELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----IPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----CCCceEEeeeccCccHHHHHHHHc
Confidence 45666664 47888999999999999999888865 345699999855443 33389999999873 1
Q ss_pred Cc--cceeEehh---hhccCC------chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 188 SP--ADAVLLKW---ILHDWN------DEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 188 p~--~D~v~~~~---vlh~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+. +|+|++-. +--++. -.-+...+.-+...|+| ||..++-..
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~f 160 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVF 160 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEE
Confidence 22 59888521 111121 11234556667788998 777666554
No 230
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.06 E-value=0.0043 Score=57.95 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=71.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CCC-ccceeEe-
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AIS-PADAVLL- 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~p-~~D~v~~- 195 (296)
..++.+|||+++|.|.=+.+++....+ ..++..|+ +.-+...++ ...++.+...|... ..+ .||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 457789999999999999999998743 57888998 655544433 34667888888664 233 4899984
Q ss_pred ---hh---------hhccCCchHH-------HHHHHHHHHhcccCCCCcEEEEEee
Q 022515 196 ---KW---------ILHDWNDEEC-------VKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 196 ---~~---------vlh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+. +...|+.++. .+||.++.+.|+| ||+|+-...
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECC
Confidence 31 2223443322 6899999999999 887755444
No 231
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.00 E-value=0.0049 Score=60.79 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=74.1
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC----C--------------------------------------
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF----P-------------------------------------- 153 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~----p-------------------------------------- 153 (296)
++..++....| .++...++|-.||+|.++++.+... |
T Consensus 177 lAaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 44555555453 1456899999999999999876631 1
Q ss_pred CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC----ccceeEehhhh-ccCC-chHHHHHHHHHHHhcc
Q 022515 154 KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS----PADAVLLKWIL-HDWN-DEECVKILKKCKEAIT 219 (296)
Q Consensus 154 ~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p----~~D~v~~~~vl-h~~~-d~~~~~iL~~~~~aL~ 219 (296)
..+++++|+ +.+++.|++ ..++|++..+|+.+ +.+ .+|+|+++=-. ..+. .++...+.+.+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899999 999988876 46789999999987 332 38998885211 1122 2333444444444444
Q ss_pred ---cCCCCcEEEEEee
Q 022515 220 ---SDGKKGKVIIIDM 232 (296)
Q Consensus 220 ---p~~~gG~lli~e~ 232 (296)
+ |++++++..
T Consensus 336 ~~~~---g~~~~llt~ 348 (702)
T PRK11783 336 QQFG---GWNAALFSS 348 (702)
T ss_pred HhCC---CCeEEEEeC
Confidence 6 888877654
No 232
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.99 E-value=0.016 Score=48.20 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=86.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhH----hhccCCCCCCeeEEeccCCCCC------CccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHV----VNGLDSDLANLKYVGGDMFEAI------SPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~ri~~~~~D~~~~~------p~~D~v~~ 195 (296)
+.++.+||-+|..+|....++..-- |.-.+.+++. |.. +..|+ ...+|--+-.|...|. +..|+++.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~-~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK-KRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc-cCCceeeeeccCCChHHhhcccccccEEEe
Confidence 6788999999999999999999965 4678888887 643 44454 5677777888888752 35888887
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA 275 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a 275 (296)
.=. + .+++.-++.|+..-||+ ||.+++.=-...-+...+|. . ...+-.+.|++.
T Consensus 150 DVa-Q---p~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~p~----~---------------vf~~e~~~L~~~ 203 (229)
T PF01269_consen 150 DVA-Q---PDQARIAALNARHFLKP---GGHLIISIKARSIDSTADPE----E---------------VFAEEVKKLKEE 203 (229)
T ss_dssp E-S-S---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSSHH----H---------------HHHHHHHHHHCT
T ss_pred cCC-C---hHHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCCHH----H---------------HHHHHHHHHHHc
Confidence 322 1 34566778889899999 89888765433322222111 0 112334567888
Q ss_pred CCceeEEEEcCC
Q 022515 276 GFSDYKIIPILG 287 (296)
Q Consensus 276 Gf~~~~~~~~~~ 287 (296)
||+..+...+..
T Consensus 204 ~~~~~e~i~LeP 215 (229)
T PF01269_consen 204 GFKPLEQITLEP 215 (229)
T ss_dssp TCEEEEEEE-TT
T ss_pred CCChheEeccCC
Confidence 999988888754
No 233
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.00042 Score=54.10 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=66.8
Q ss_pred CCCEEEEecCCchHHH-HHHHHHCCCCeEEeccc-hhHhhccCC--------CCCCeeEEeccCCCC-----CCccceeE
Q 022515 130 GLNSLVDVGGGIGTAA-KAIAKAFPKLECTCFDL-PHVVNGLDS--------DLANLKYVGGDMFEA-----ISPADAVL 194 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~-~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~D~~~~-----~p~~D~v~ 194 (296)
.+.+||++|||--.++ ..++..-|...+.+-|- +..+++.++ ...++..+..+.... +..||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 3478999999965554 45555668888888897 666666554 245555555554442 12499999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+..++. =++-...+.+.|...|+| .|+-+++.
T Consensus 109 aADClF--fdE~h~sLvdtIk~lL~p---~g~Al~fs 140 (201)
T KOG3201|consen 109 AADCLF--FDEHHESLVDTIKSLLRP---SGRALLFS 140 (201)
T ss_pred eccchh--HHHHHHHHHHHHHHHhCc---ccceeEec
Confidence 999884 344556789999999999 67755544
No 234
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.91 E-value=0.0063 Score=50.54 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=74.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC---------Ccc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI---------SPA 190 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~---------p~~ 190 (296)
.-+.++.+|||.=||..+.+++.+.|. -+++.+|+ +...+.+.+ ....|+++.++..+.+ +.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 446789999999999999999999875 58999998 666665543 6889999999887631 238
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee-eeCC
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM-IREN 236 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~-~~~~ 236 (296)
|.+|+- +|-+.- .....++.+.+++ || ++++|. .++.
T Consensus 151 DfaFvD----adK~nY-~~y~e~~l~Llr~---GG-vi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVD----ADKDNY-SNYYERLLRLLRV---GG-VIVVDNVLWPG 188 (237)
T ss_pred eEEEEc----cchHHH-HHHHHHHHhhccc---cc-EEEEeccccCC
Confidence 999884 344443 4889999999999 55 555554 4443
No 235
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.90 E-value=0.00096 Score=60.05 Aligned_cols=104 Identities=20% Similarity=0.212 Sum_probs=80.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~ 197 (296)
..++..++|+|||.|.....+.. +...+.+++|. +..+.++.. ..++..++.+|+.+ +++ .+|.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 34455899999999999876655 45778999998 666555443 56677779999998 566 399999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~ 237 (296)
+..|.++.. .++++++++++| ||....-|.+....
T Consensus 187 ~~~~~~~~~--~~y~Ei~rv~kp---GG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 187 VVCHAPDLE--KVYAEIYRVLKP---GGLFIVKEWIKTAK 221 (364)
T ss_pred ecccCCcHH--HHHHHHhcccCC---CceEEeHHHHHhhh
Confidence 998888865 789999999999 88877777665543
No 236
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.89 E-value=0.002 Score=52.56 Aligned_cols=99 Identities=12% Similarity=0.148 Sum_probs=67.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C----CccceeEe
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I----SPADAVLL 195 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~----p~~D~v~~ 195 (296)
.+.++||+=||+|.++.+.+.+. ..+++.+|. +..+...++ ..+++.++.+|.+.. . ..||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 46899999999999999988884 348999999 777776655 456799999997651 1 25999998
Q ss_pred hhhhccCCchH-HHHHHHHHH--HhcccCCCCcEEEEEeeeeCC
Q 022515 196 KWILHDWNDEE-CVKILKKCK--EAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 196 ~~vlh~~~d~~-~~~iL~~~~--~aL~p~~~gG~lli~e~~~~~ 236 (296)
.=-.. ... ..+++..+. ..|++ +.++|+|.....
T Consensus 121 DPPY~---~~~~~~~~l~~l~~~~~l~~----~~~ii~E~~~~~ 157 (183)
T PF03602_consen 121 DPPYA---KGLYYEELLELLAENNLLNE----DGLIIIEHSKKE 157 (183)
T ss_dssp --STT---SCHHHHHHHHHHHHTTSEEE----EEEEEEEEETTS
T ss_pred CCCcc---cchHHHHHHHHHHHCCCCCC----CEEEEEEecCCC
Confidence 42111 112 245677766 67887 778888876653
No 237
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.045 Score=44.70 Aligned_cols=140 Identities=13% Similarity=0.128 Sum_probs=96.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhH----hhccCCCCCCeeEEeccCCCCC------CccceeEeh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHV----VNGLDSDLANLKYVGGDMFEAI------SPADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~ri~~~~~D~~~~~------p~~D~v~~~ 196 (296)
++++.+||=+|..+|....++..-.++-.+.+++. |.+ +..|+ ...+|--+-+|...|. +..|+++.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~-~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~- 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE-KRPNIIPILEDARKPEKYRHLVEKVDVIYQ- 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH-hCCCceeeecccCCcHHhhhhcccccEEEE-
Confidence 78899999999999999999999888777788876 544 34454 5677777888988753 35788876
Q ss_pred hhhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515 197 WILHDWN-DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA 275 (296)
Q Consensus 197 ~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a 275 (296)
+.. .+++.-+..|+..-|++ ||.+++.=-...-+.+.+|. .. .++-.+.|++.
T Consensus 152 ----DVAQp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~dp~----~v---------------f~~ev~kL~~~ 205 (231)
T COG1889 152 ----DVAQPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTADPE----EV---------------FKDEVEKLEEG 205 (231)
T ss_pred ----ecCCchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCCHH----HH---------------HHHHHHHHHhc
Confidence 333 44556667888999998 88877776555544443221 11 12223567888
Q ss_pred CCceeEEEEcCC---cceEEEEe
Q 022515 276 GFSDYKIIPILG---LRSLIEVY 295 (296)
Q Consensus 276 Gf~~~~~~~~~~---~~~vi~~~ 295 (296)
||++.++..+.. ...+|.++
T Consensus 206 ~f~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 206 GFEILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred CceeeEEeccCCcccceEEEEEe
Confidence 999988887743 34555543
No 238
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.87 E-value=0.0022 Score=56.91 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=66.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHH-------CCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCC-C-CC--
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKA-------FPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFE-A-IS-- 188 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~-~-~p-- 188 (296)
..+..+|+|-.||+|.++.++.+. .+..+++++|+ +.++..++- ......+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 455678999999999999998874 47789999999 777766543 23335688889876 2 22
Q ss_pred -ccceeEehh--hhccCCc-----------------hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 189 -PADAVLLKW--ILHDWND-----------------EECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 189 -~~D~v~~~~--vlh~~~d-----------------~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.||+|++.= ....|.+ ..-..++.++.+.|++ ||++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEe
Confidence 499998732 2221110 1113578999999999 89876655
No 239
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.84 E-value=0.003 Score=55.05 Aligned_cols=100 Identities=24% Similarity=0.401 Sum_probs=73.1
Q ss_pred CCEEEEecCCchHHHHHHHHHC--------------------CCCeEEeccc-h--hHhhccCC----------------
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAF--------------------PKLECTCFDL-P--HVVNGLDS---------------- 171 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~--------------------p~~~~~~~D~-~--~~~~~a~~---------------- 171 (296)
..+||.||||.|.-..+++..+ +.++++.+|+ + .|++.-..
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999998887777665 2368899998 4 45543211
Q ss_pred ------CCCCeeEEeccCCC-CC---------CccceeEehhhhccC---CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 172 ------DLANLKYVGGDMFE-AI---------SPADAVLLKWILHDW---NDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 172 ------~~~ri~~~~~D~~~-~~---------p~~D~v~~~~vlh~~---~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
..=+++|...|+.+ +. +..++|.+-+.++-. ...+..++|.++...++| |..|+|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 12347889999987 22 236888887777643 345678999999999999 889999985
Q ss_pred e
Q 022515 233 I 233 (296)
Q Consensus 233 ~ 233 (296)
-
T Consensus 244 p 244 (315)
T PF11312_consen 244 P 244 (315)
T ss_pred C
Confidence 3
No 240
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.0051 Score=51.59 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=77.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCC----CeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---CCc---cc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPK----LECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---ISP---AD 191 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~p~---~D 191 (296)
-+..+++|+|.|+-.=+..|+..+.. ++++-+|+ ..++....+ ..-.+.-+++|+..+ .|+ ==
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 35679999999999998888887765 79999999 666654322 344566678888762 343 23
Q ss_pred eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.+++.+.|-+++.++|..+|.+++.+|.| |-.+++--.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlGvD 194 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLGVD 194 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEecc
Confidence 56778899999999999999999999999 777776543
No 241
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.80 E-value=0.0052 Score=53.99 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=93.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHCC-CCeEEeccchhHhhccCC--------CCCCeeEEeccCCC-CCC------ccc--
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDLPHVVNGLDS--------DLANLKYVGGDMFE-AIS------PAD-- 191 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~D~~~-~~p------~~D-- 191 (296)
+...||-+|||-=.-+..+ .+| ++++.-+|+|++++.-++ ...+.++++.|+++ +++ +||
T Consensus 92 g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeec--CCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 4689999999965554332 233 578888899999986544 23489999999995 543 244
Q ss_pred ---eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh-cC---ccccC
Q 022515 192 ---AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL-LT---GTERD 264 (296)
Q Consensus 192 ---~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---g~~rt 264 (296)
++++-.++.+++.++..++|++|.....| |..++. +...+...... ............... .+ -....
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~ 244 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRVAF-DYSLPGSLRDR-LRRPAARKTMRGEDLDRGELVYFGDD 244 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceEEE-eccccHHHHhc-ccchhhhhhccccccccccceeccCC
Confidence 78889999999999999999999999998 555544 43211111100 000000111100000 01 11236
Q ss_pred HHHHHHHHHhcCCceeEE
Q 022515 265 EKEWTKLFTYAGFSDYKI 282 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~~ 282 (296)
..+++.++.+.||.....
T Consensus 245 ~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 245 PAEIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHHHhcCEEEEec
Confidence 799999999999987766
No 242
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0069 Score=55.96 Aligned_cols=93 Identities=22% Similarity=0.318 Sum_probs=68.4
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC--C-CC---ccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE--A-IS---PADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~--~-~p---~~D~v~~ 195 (296)
..+..+++|+=||.|.++..|+++ ..+++++++ ++.++.|++ ..++++|+.+|..+ + .. .+|+|++
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 456789999999999999999965 568999999 999988876 45669999999877 2 21 4799988
Q ss_pred hhhhccCCchHHH-HHHHHHHHhcccCCCCcEEEEEe
Q 022515 196 KWILHDWNDEECV-KILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 196 ~~vlh~~~d~~~~-~iL~~~~~aL~p~~~gG~lli~e 231 (296)
|-|...+. .+++.+.+. +| -..++|.-
T Consensus 369 -----DPPR~G~~~~~lk~l~~~-~p---~~IvYVSC 396 (432)
T COG2265 369 -----DPPRAGADREVLKQLAKL-KP---KRIVYVSC 396 (432)
T ss_pred -----CCCCCCCCHHHHHHHHhc-CC---CcEEEEeC
Confidence 45544444 556665554 55 35565543
No 243
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.70 E-value=0.0038 Score=56.67 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=74.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCC-------CCCCeeEEeccCCCC----C--C-cccee
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFEA----I--S-PADAV 193 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~~----~--p-~~D~v 193 (296)
.+.+|||+=|=||.++.+.+.. +. ++|.+|+ ...++.|++ ..+++.|+.+|.++- . + .||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 3789999999999999887776 55 8999999 889988887 367899999999872 1 2 59999
Q ss_pred Eeh--------hhhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 194 LLK--------WILHDWN-DEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 194 ~~~--------~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
++- ... |. ..+-..++..+.+.|+| ||.++++..
T Consensus 295 ilDPPsF~r~k~~~--~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQE--FSAQRDYKDLNDLALRLLAP---GGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccc--hhHHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 981 111 22 22335788999999999 888877664
No 244
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.69 E-value=0.0048 Score=55.98 Aligned_cols=92 Identities=13% Similarity=0.181 Sum_probs=70.4
Q ss_pred CEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC--C--CccceeEehhhhc
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA--I--SPADAVLLKWILH 200 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~--~--p~~D~v~~~~vlh 200 (296)
.+|||.-||+|..++..+.+.++ -+++..|+ |..++.+++ ...++++..+|...- . ..||+|.+.= .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 58999999999999999998654 47999999 888887765 234688888888762 1 3599998843 2
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.. ...++..+.+++++ ||.|++.-+
T Consensus 124 --Gs--~~~fld~al~~~~~---~glL~vTaT 148 (374)
T TIGR00308 124 --GT--PAPFVDSAIQASAE---RGLLLVTAT 148 (374)
T ss_pred --CC--cHHHHHHHHHhccc---CCEEEEEec
Confidence 11 13678888888998 888888843
No 245
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.58 E-value=0.0074 Score=57.56 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=47.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCC--------CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC--------C
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPK--------LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA--------I 187 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~--------~ 187 (296)
...+|+|.|||+|.++.++++..+. ..++++|+ +..+..++. ....+++..+|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 56899999 888776654 112355566665431 1
Q ss_pred CccceeEe
Q 022515 188 SPADAVLL 195 (296)
Q Consensus 188 p~~D~v~~ 195 (296)
+.||+|+.
T Consensus 111 ~~fD~IIg 118 (524)
T TIGR02987 111 DLFDIVIT 118 (524)
T ss_pred CcccEEEe
Confidence 35899877
No 246
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.45 E-value=0.0088 Score=52.51 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=57.1
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE 185 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~ 185 (296)
+.+++++.+. ..++..+||.=+|.|..+..++++.|+.+++++|. |.+++.+++ ..+|++++.++|.+
T Consensus 8 ll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 8 LLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred hHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3456777766 56778999999999999999999988899999999 999988876 34689999988875
No 247
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.45 E-value=0.07 Score=46.50 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=85.5
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccchhH-------hhccCC--------------------------------
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHV-------VNGLDS-------------------------------- 171 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~-------~~~a~~-------------------------------- 171 (296)
..+||-=|||.|.++..|+...+.+++-=+- --| +...+.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfS-y~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFS-YFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHH-HHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 5689999999999999999887655432111 000 100000
Q ss_pred ------CCCCeeEEeccCCC--CCC----ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCC
Q 022515 172 ------DLANLKYVGGDMFE--AIS----PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG 239 (296)
Q Consensus 172 ------~~~ri~~~~~D~~~--~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~ 239 (296)
..+..+.-+|||.+ ..+ .||+|+..+.+- .-....+.|..|...|+| ||..+=+-+..-.-..
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d 304 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPLLYHFED 304 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEeccceeeeccC
Confidence 12334556689987 222 399998876553 344567899999999999 7776655544332221
Q ss_pred CCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 240 DDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
.. +. ..-.+-+.+.+++..+.+.-||++.+-..+
T Consensus 305 ~~---------g~---~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 305 TH---------GV---ENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred CC---------CC---cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 10 00 001134569999999999999998776543
No 248
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.29 E-value=0.031 Score=46.06 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=73.5
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC----CCCCeeEEeccCCC---CCC--ccceeEehhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS----DLANLKYVGGDMFE---AIS--PADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~ri~~~~~D~~~---~~p--~~D~v~~~~v 198 (296)
..+++|||.||=|-|-....+.++.|..+.++---|.|.++.+. ..+++-...|-..+ .+| .||-|+..-.
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 36789999999999999998888888777666555999988876 46677777764443 344 3888777443
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
-. ..++...+.+.+.+.||| +|.+-.+..
T Consensus 179 ~e--~yEdl~~~hqh~~rLLkP---~gv~SyfNg 207 (271)
T KOG1709|consen 179 SE--LYEDLRHFHQHVVRLLKP---EGVFSYFNG 207 (271)
T ss_pred hh--HHHHHHHHHHHHhhhcCC---CceEEEecC
Confidence 22 135677889999999999 777655554
No 249
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.11 E-value=0.011 Score=51.81 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=52.7
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE 185 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~ 185 (296)
+..++++.+. ..+...++|.=-|.|..+.++++++|+.+++++|. |.+++.+++ ..+|+.++.++|.+
T Consensus 8 ll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred cHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 3466777776 67788999999999999999999999999999999 999988765 46899999998765
No 250
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.07 E-value=0.022 Score=46.93 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=52.7
Q ss_pred CCCEEEEecCCchHHH---HHHHHHC-CCCeEEeccc-hh-HhhccCC---CCCCeeEEeccCCCC-----C------Cc
Q 022515 130 GLNSLVDVGGGIGTAA---KAIAKAF-PKLECTCFDL-PH-VVNGLDS---DLANLKYVGGDMFEA-----I------SP 189 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~---~~l~~~~-p~~~~~~~D~-~~-~~~~a~~---~~~ri~~~~~D~~~~-----~------p~ 189 (296)
++.+|+++|--.|..+ ..+++.+ +..+++++|+ .. .-..+.+ ..+||+++.||-.++ . +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4579999996555444 4556666 7789999998 32 2222322 569999999998762 1 11
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
..+|+. ..-|... .+.+.|+.....+++ |+.++|-|....
T Consensus 112 ~vlVil-Ds~H~~~--hvl~eL~~y~plv~~---G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVIL-DSSHTHE--HVLAELEAYAPLVSP---GSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEE-SS----S--SHHHHHHHHHHT--T---T-EEEETSHHHH
T ss_pred ceEEEE-CCCccHH--HHHHHHHHhCccCCC---CCEEEEEecccc
Confidence 234444 3334333 356788889999998 888777776543
No 251
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.87 E-value=0.059 Score=48.07 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=77.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--CC-CccceeEehhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--AI-SPADAVLLKWI 198 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~~-p~~D~v~~~~v 198 (296)
..+.+|||.=+|.|.+++.+++.- ..+++.+|+ |..++..++ ..++|..+.||... +. +.+|=|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 357899999999999999998874 334999999 998877665 56779999999988 23 45999999753
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~ 237 (296)
- .+.+++-.+.+.+++ ||.+...+....+.
T Consensus 266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K------SAHEFLPLALELLKD---GGIIHYYEFVPEDD 295 (341)
T ss_pred C------cchhhHHHHHHHhhc---CcEEEEEeccchhh
Confidence 2 234678888889998 88888877665443
No 252
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=0.046 Score=44.07 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=47.4
Q ss_pred HHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCCCCCCeeEEec-cCCCC---------CC
Q 022515 120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDSDLANLKYVGG-DMFEA---------IS 188 (296)
Q Consensus 120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~-D~~~~---------~p 188 (296)
+-+.|. .+++..+|||+||..|.++.-..++. |+..+.++|+-++.. ....++..+ |+.++ .|
T Consensus 60 indKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p-----~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 60 INDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP-----PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred ehhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC-----CCCcccccccccCCHHHHHHHHHhCC
Confidence 334454 35778999999999999998776665 999999999844332 222344444 55543 24
Q ss_pred c--cceeEe
Q 022515 189 P--ADAVLL 195 (296)
Q Consensus 189 ~--~D~v~~ 195 (296)
+ .|+|++
T Consensus 134 ~r~VdvVlS 142 (232)
T KOG4589|consen 134 NRPVDVVLS 142 (232)
T ss_pred CCcccEEEe
Confidence 3 687766
No 253
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.80 E-value=0.025 Score=49.33 Aligned_cols=98 Identities=15% Similarity=0.266 Sum_probs=68.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCCC------CCccceeEe
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFEA------ISPADAVLL 195 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~~------~p~~D~v~~ 195 (296)
.+.+|||+=|=||.++.+.+.. ...+++.+|. ...++.+++ ..++++|+.+|.++. ...||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4679999999999999876654 2347999999 888888876 347899999999872 135999988
Q ss_pred h---hhhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 196 K---WILHDWN-DEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 196 ~---~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
- +.=..+. ..+-.++++++.+.|+| ||.|+.+.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~s 238 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCS 238 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEc
Confidence 1 1100111 12335789999999999 77765544
No 254
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.58 E-value=0.14 Score=45.49 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=73.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEec-cCCC-CCCc--cceeEeh-
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGG-DMFE-AISP--ADAVLLK- 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~-D~~~-~~p~--~D~v~~~- 196 (296)
..++..|||==||||.++++.... ++++++.|+ ..|+..|+. ......+... |... ++++ +|.|+.-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456779999999999999987776 889999999 889988876 2344545544 8887 7764 8888761
Q ss_pred -----hhhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 197 -----WILHDWN-DEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 197 -----~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.-..--. ++--.++|..+.+.|++ ||++++.-.
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 1111111 23345889999999999 898877553
No 255
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.57 E-value=0.31 Score=44.36 Aligned_cols=74 Identities=20% Similarity=0.200 Sum_probs=47.2
Q ss_pred CCCEEEEecCCchHHHHHHHH--------H-------CCCCeEEeccchhH----h-hccCC--------------CCCC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAK--------A-------FPKLECTCFDLPHV----V-NGLDS--------------DLAN 175 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~--------~-------~p~~~~~~~D~~~~----~-~~a~~--------------~~~r 175 (296)
+..+|+|+|||+|..+..+.. + -|..++..-|+|.- + ..... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 467999999999977654422 2 25678888888621 1 11100 0112
Q ss_pred ---eeEEeccCCC-CCC--ccceeEehhhhccCC
Q 022515 176 ---LKYVGGDMFE-AIS--PADAVLLKWILHDWN 203 (296)
Q Consensus 176 ---i~~~~~D~~~-~~p--~~D~v~~~~vlh~~~ 203 (296)
+.-++|.|+. -+| ..+++++++.||..+
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence 2335688888 466 389999999999765
No 256
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=0.014 Score=45.41 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=37.3
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+.|+|++.+|+.|+..++-...++.+++.||| ||+|-+.-+
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvP 87 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVP 87 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcC
Confidence 48999999999999988889999999999999 999887653
No 257
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.46 E-value=0.014 Score=42.61 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=26.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL 162 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~ 162 (296)
.+....+|||||.|.+.--|.+. +.++.++|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 35678999999999998777666 778899994
No 258
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.30 E-value=0.25 Score=41.70 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=54.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC-----ccceeEehhhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS-----PADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p-----~~D~v~~~~vl 199 (296)
.+++||-|| -.=..+++++...+..+++++|+ +..++..++ ..-.|+.+..|+.+++| .||+++..=.
T Consensus 44 ~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 467899998 44445566666667789999999 777765543 33349999999999766 3999988321
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEE
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVI 228 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~ll 228 (296)
++.+...-++.+...+|+. +|+..+
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~--~g~~gy 146 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKG--EGCAGY 146 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-S--TT-EEE
T ss_pred --CCHHHHHHHHHHHHHHhCC--CCceEE
Confidence 3345667889999999997 354433
No 259
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.28 E-value=0.045 Score=49.30 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=60.5
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCC---------------------------------------e
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKL---------------------------------------E 156 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~---------------------------------------~ 156 (296)
++..++..-. +.+...++|==||+|.++++.+...+++ .
T Consensus 179 LAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 179 LAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 3445554445 4555799999999999999988876531 2
Q ss_pred EEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEeh
Q 022515 157 CTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLK 196 (296)
Q Consensus 157 ~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~ 196 (296)
++++|+ +.+++.|+. ..+.|+|..+|+.. ..+ .+|+++++
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 679999 999988765 68999999999987 434 58999884
No 260
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.26 E-value=0.37 Score=43.23 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=42.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHH--------C--------CCCeEEeccchhH--hhccCC---------CCCC--eeE
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKA--------F--------PKLECTCFDLPHV--VNGLDS---------DLAN--LKY 178 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~--------~--------p~~~~~~~D~~~~--~~~a~~---------~~~r--i~~ 178 (296)
..+.-+|+|+||.+|..+..+... + |..+++.-|+|.- -...+. .... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 345679999999999998876542 1 3356777787531 111111 1122 333
Q ss_pred EeccCCC-CCC--ccceeEehhhhccCC
Q 022515 179 VGGDMFE-AIS--PADAVLLKWILHDWN 203 (296)
Q Consensus 179 ~~~D~~~-~~p--~~D~v~~~~vlh~~~ 203 (296)
++|.|+. -+| ..|++++++.||..+
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred cCchhhhccCCCCceEEEEEechhhhcc
Confidence 6789998 456 389999999999764
No 261
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.22 Score=43.40 Aligned_cols=147 Identities=16% Similarity=0.216 Sum_probs=98.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC--CCCeEEeccchhHhhccCC---------------------------CCCCeeE
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF--PKLECTCFDLPHVVNGLDS---------------------------DLANLKY 178 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~---------------------------~~~ri~~ 178 (296)
..+...|+-+|||.-.+...|...+ +.++++-+|-|++++.--. ...|...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567899999999999999999988 7889999999777643211 1244445
Q ss_pred EeccCCC--CC-----C-----c-cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhh
Q 022515 179 VGGDMFE--AI-----S-----P-ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE 245 (296)
Q Consensus 179 ~~~D~~~--~~-----p-----~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~ 245 (296)
...|..+ .+ + + .-+++.-=+|-.++.+++..+++.+....+. +..++.|.+.+.+. +
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~----F-- 234 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDR----F-- 234 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCCh----H--
Confidence 5555553 11 0 1 2344455567778888889999999998885 88999998885432 2
Q ss_pred hhhhhhhhhhhh---cCc--cccCHHHHHHHHHhcCCceeEEEEc
Q 022515 246 TQLFFDMLMMVL---LTG--TERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 246 ~~~~~~~~~~~~---~~g--~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
...+--+.-.. ..| ...|.+..++-+.++||+.+.+..+
T Consensus 235 -g~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 235 -GKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred -HHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 21111111100 012 2338888999999999998887654
No 262
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.12 E-value=0.15 Score=43.32 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=60.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC-----------CCCCeeEEeccCCCC------CCc-cc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-----------DLANLKYVGGDMFEA------ISP-AD 191 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----------~~~ri~~~~~D~~~~------~p~-~D 191 (296)
...+||++|+|+|..++. +......+++.-|.|.+++.-+. .+..+.+...+-..+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~-aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGIL-AALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHH-HHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 456899999999955554 44445788999998766654321 234566655444431 234 89
Q ss_pred eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+++.+.++++-... ..+++-++..|.. ++.+++.-.
T Consensus 165 lilasDvvy~~~~~--e~Lv~tla~ll~~---~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEESF--EGLVKTLAFLLAK---DGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCCcc--hhHHHHHHHHHhc---CCeEEEEEe
Confidence 99999998754322 2445555556776 664444443
No 263
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.067 Score=41.40 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=69.7
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCCcc
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AISPA 190 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~ 190 (296)
+++..+. ..+.++.+|+|.|.|....+.++.. -...+++++ |-.+..++- ...+..|...|+++ ++.+|
T Consensus 63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 3444444 4556899999999999988777664 457899999 777665542 57889999999999 77777
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
..++++.+=..++| +-.+++.-|+. +.+++..-+-.|.
T Consensus 140 ~~vviFgaes~m~d-----Le~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFGAESVMPD-----LEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred ceEEEeehHHHHhh-----hHHHHHhhCcC---CCeEEEEecCCCc
Confidence 65554332221222 22344444565 6777766654443
No 264
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=94.78 E-value=0.16 Score=41.27 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=66.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C----CCccceeEeh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A----ISPADAVLLK 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~----~p~~D~v~~~ 196 (296)
.+.++||+=+|+|.++.+-+.+. ..+++.+|. ..++...++ ...+..+...|... . .+.||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 46799999999999999999985 458899998 666665554 35888888888774 1 1239999994
Q ss_pred hhhccCCchHHHHHHHH--HHHhcccCCCCcEEEEEeeeeC
Q 022515 197 WILHDWNDEECVKILKK--CKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~--~~~aL~p~~~gG~lli~e~~~~ 235 (296)
=-.+ +.--+....+.. -...|+| +.++++|.-..
T Consensus 122 PPy~-~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYA-KGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCCc-cchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 3333 111111112222 3456888 56677776544
No 265
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.76 E-value=0.017 Score=47.66 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=44.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE 185 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~ 185 (296)
....|+|.-||-|...+.++.++| .++.+|+ |--+..|+. ..+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 557899999999999999999977 6777777 766666654 46799999999987
No 266
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=94.74 E-value=0.071 Score=33.79 Aligned_cols=43 Identities=35% Similarity=0.399 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHh
Q 022515 28 NSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTW 74 (296)
Q Consensus 28 ~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~ 74 (296)
.-.+|.+|.++|-||.= ...|+.|||+.+|+++..+..+|+..
T Consensus 5 Q~e~L~~A~~~GYfd~P----R~~tl~elA~~lgis~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDVP----RRITLEELAEELGISKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCCC----CcCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 45689999999999954 46999999999999998887766654
No 267
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.73 E-value=0.089 Score=45.74 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=57.9
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCC----CCCCeeEEeccCCC
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDS----DLANLKYVGGDMFE 185 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~ 185 (296)
+.+++++.+. ..+.+..+|.==|.|..+.++++++|... .+++|. |.+++.|++ ..+|++++.++|.+
T Consensus 11 Ll~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 11 LLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 3466777777 66779999999999999999999998764 999999 999999987 37899999988764
No 268
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.72 E-value=0.21 Score=46.25 Aligned_cols=98 Identities=20% Similarity=0.266 Sum_probs=72.1
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhhccCC
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWN 203 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~ 203 (296)
-+++-+|||.-.++.++-+.. .-.++.+|. +-+++.... ...-+.++..|+.. .++ .||+++....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 389999999999888776642 235677787 444444332 45668888899888 555 599999999998853
Q ss_pred -chHH-------HHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 204 -DEEC-------VKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 204 -d~~~-------~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
++++ -..+..++++++| ||+.+.+...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEee
Confidence 3332 2458899999999 8998887763
No 269
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.53 E-value=0.18 Score=44.91 Aligned_cols=93 Identities=20% Similarity=0.228 Sum_probs=65.1
Q ss_pred cCCCCEEEEecC-CchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec---cCCCCCCc-cceeEehhhhcc
Q 022515 128 FEGLNSLVDVGG-GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG---DMFEAISP-ADAVLLKWILHD 201 (296)
Q Consensus 128 ~~~~~~vLDvGg-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~---D~~~~~p~-~D~v~~~~vlh~ 201 (296)
..++.+|+=+|. |.|+++..+++..- .+++++|. ++-.+.|+++... .++.. |..+...+ +|+++..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd-~~i~~~~~~~~~~~~~~~d~ii~tv~-~- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD-HVINSSDSDALEAVKEIADAIIDTVG-P- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc-EEEEcCCchhhHHhHhhCcEEEECCC-h-
Confidence 567788888884 67899999999774 99999999 8888888753222 33332 23333332 888887543 1
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
..+....++|++ ||+++++-...
T Consensus 240 -------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 -------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred -------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 346677788898 99999988663
No 270
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=94.25 E-value=0.081 Score=43.05 Aligned_cols=85 Identities=21% Similarity=0.302 Sum_probs=61.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC----C----CCCeeEEeccCCC-CC----C--c-----
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS----D----LANLKYVGGDMFE-AI----S--P----- 189 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~----~~ri~~~~~D~~~-~~----p--~----- 189 (296)
+...|+-+|||-=.....+....++.+++-+|+|++++.-++ . ..+.+++..|+.+ ++ . +
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 445999999999999999998888899999999998876655 1 2336789999996 21 1 2
Q ss_pred cceeEehhhhccCCchHHHHHHHHH
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKC 214 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~ 214 (296)
.-++++-.++.+++.+++..+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 3477888889999999988888876
No 271
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.19 E-value=0.041 Score=49.72 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=38.4
Q ss_pred EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccC
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDM 183 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~ 183 (296)
+|||+=||.|.++..|++.. -+++++|. +++++.|++ ..++++|..++.
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 89999999999999998875 48999999 899988876 567899987654
No 272
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=94.12 E-value=0.5 Score=43.08 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=65.3
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHH----HC---CCCeEEeccchh-----HhhccCC--------CCCCe
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAK----AF---PKLECTCFDLPH-----VVNGLDS--------DLANL 176 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~----~~---p~~~~~~~D~~~-----~~~~a~~--------~~~ri 176 (296)
.+.|++.+. -...-+|+|+|.|.|..=..|.+ +. |.+++|+++.|. .++.+.+ ..-..
T Consensus 99 NqaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~f 176 (374)
T PF03514_consen 99 NQAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPF 176 (374)
T ss_pred hHHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccE
Confidence 457777777 55678999999999965444444 32 778999999832 2222221 23334
Q ss_pred eEEec--cCCCCC--------C-ccceeEehhhhccCCch------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 177 KYVGG--DMFEAI--------S-PADAVLLKWILHDWNDE------ECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 177 ~~~~~--D~~~~~--------p-~~D~v~~~~vlh~~~d~------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
+|... +-.++. + .+=+|-+..-||+..++ ....+|+.+ +.|+| -.++++|.-.+.
T Consensus 177 ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P----~vvv~~E~ea~~ 248 (374)
T PF03514_consen 177 EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNP----KVVVLVEQEADH 248 (374)
T ss_pred EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCC----CEEEEEeecCCC
Confidence 44442 211111 1 12234456667888633 233567655 57898 577777765443
No 273
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.07 E-value=0.1 Score=46.83 Aligned_cols=109 Identities=13% Similarity=0.256 Sum_probs=73.4
Q ss_pred HHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc---hhHhhccCC------------CCCCeeEEeccCC
Q 022515 120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL---PHVVNGLDS------------DLANLKYVGGDMF 184 (296)
Q Consensus 120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~------------~~~ri~~~~~D~~ 184 (296)
+.+.+. ..+.....|+|+|.|.....++.....-+-+|+.+ |.-+....+ ....++.+.|+|.
T Consensus 184 i~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 184 IVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 344444 66778999999999999987777554444555554 332222211 2466888999998
Q ss_pred CC------CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 185 EA------ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 185 ~~------~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
.+ .+.++++++.++.. +++...+ +.++..-+++ |-+|+-.+...+.
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~F--dp~L~lr-~~eil~~ck~---gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAF--DPELKLR-SKEILQKCKD---GTRIISSKPLVPR 313 (419)
T ss_pred CHHHHHHHhhcceEEEEecccC--CHHHHHh-hHHHHhhCCC---cceEecccccccc
Confidence 84 24699999999874 4443332 4467777788 8898888877763
No 274
>PRK10742 putative methyltransferase; Provisional
Probab=93.78 E-value=0.11 Score=44.08 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=53.6
Q ss_pred HHHHHhcccccCCCC--EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--------------CCCCeeEEe
Q 022515 118 SVMIHKCKDVFEGLN--SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--------------DLANLKYVG 180 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~--~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~ 180 (296)
+.++++.. ++++. +|||.=+|+|..+..++.+ +++++.+|. |.+....+. ...|++++.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 45666665 56655 9999999999999999988 778999998 655543222 125788888
Q ss_pred ccCCC---CCC-ccceeEe
Q 022515 181 GDMFE---AIS-PADAVLL 195 (296)
Q Consensus 181 ~D~~~---~~p-~~D~v~~ 195 (296)
+|..+ ..+ .||+|++
T Consensus 152 ~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYL 170 (250)
T ss_pred CcHHHHHhhCCCCCcEEEE
Confidence 88765 222 4888876
No 275
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=93.56 E-value=0.031 Score=36.59 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 29 SMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 29 ~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+++|.--.++.|+..|.. ++|.|+.|||+.+|+++..+.++|......|
T Consensus 4 ~~aL~~p~R~~Il~~L~~-~~~~t~~ela~~l~~~~~t~s~hL~~L~~aG 52 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLAS-NGPMTVSELAEELGISQSTVSYHLKKLEEAG 52 (61)
T ss_dssp HHHHTSHHHHHHHHHHHH-CSTBEHHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHhc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 455666678889999933 2899999999999999999999888776544
No 276
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=93.41 E-value=0.18 Score=43.65 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=71.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---CC--Cccc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---AI--SPAD 191 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~~--p~~D 191 (296)
..++..++=||||.|.+.+...+. +.. .+..+|+ ..+++..++ ...|+.+..||-+. .. ..||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 456789999999999999988887 555 5778888 777777665 57899999998665 23 3599
Q ss_pred eeEehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 192 AVLLKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 192 ~v~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+|+.-..=-..|-. -...++.-+.++||+ ||.+++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQGE 237 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEecc
Confidence 99874311001111 013566778899999 888776653
No 277
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=93.28 E-value=0.027 Score=35.57 Aligned_cols=41 Identities=29% Similarity=0.455 Sum_probs=32.4
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|++.|.+.+++.|+.|||+++|++..-+.|.|......|
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g 46 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEG 46 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCc
Confidence 45778888766778999999999999999988877766544
No 278
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.26 E-value=0.87 Score=38.34 Aligned_cols=147 Identities=10% Similarity=0.038 Sum_probs=85.6
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHh-hccCCCCCCeeEEec-cCCC----CCC-cc
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVV-NGLDSDLANLKYVGG-DMFE----AIS-PA 190 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~ri~~~~~-D~~~----~~p-~~ 190 (296)
..++.+. ...++..+||||..||.++..++++- -.+++++|. -..+ ...+ ..+|+..... |+.. .+. ..
T Consensus 69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR-~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR-NDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh-cCCcEEEEecCChhhCCHHHcccCC
Confidence 3455555 13467899999999999999888873 347888887 3333 2333 5666665543 4433 122 25
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEE-EEeeeeCCCCCCCchhhhhhhhhhhhhhh--cCccccCHHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVI-IIDMIRENKKGDDKSIETQLFFDMLMMVL--LTGTERDEKE 267 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~ll-i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~rt~~e 267 (296)
|++++--.+ -....+|-.+...++| ++-++ ++-+-....+. ...- -.+. ......-..+
T Consensus 146 d~~v~DvSF-----ISL~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~---------~v~k-kGvv~d~~~~~~v~~~ 207 (245)
T COG1189 146 DLIVIDVSF-----ISLKLILPALLLLLKD---GGDLVLLVKPQFEAGRE---------QVGK-KGVVRDPKLHAEVLSK 207 (245)
T ss_pred CeEEEEeeh-----hhHHHHHHHHHHhcCC---CceEEEEecchhhhhhh---------hcCc-CceecCcchHHHHHHH
Confidence 677663222 2235778888888998 55444 33332222111 1100 0000 0122335578
Q ss_pred HHHHHHhcCCceeEEEEcC
Q 022515 268 WTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~~~~~ 286 (296)
+.+++.+.||++..+.+.+
T Consensus 208 i~~~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 208 IENFAKELGFQVKGLIKSP 226 (245)
T ss_pred HHHHHhhcCcEEeeeEccC
Confidence 8899999999998887653
No 279
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.11 E-value=0.24 Score=43.37 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=42.9
Q ss_pred CCEEEEecCCchHH-HHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEec----cCCCCC--C--cccee
Q 022515 131 LNSLVDVGGGIGTA-AKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGG----DMFEAI--S--PADAV 193 (296)
Q Consensus 131 ~~~vLDvGgG~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~----D~~~~~--p--~~D~v 193 (296)
.-++||||+|.... .+--++.| ++++++.|+ +..++.|++ +.++|+++.. +++... + .||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999998744 34334444 899999999 889988876 6789999754 455422 1 39999
Q ss_pred EehhhhccCCch
Q 022515 194 LLKWILHDWNDE 205 (296)
Q Consensus 194 ~~~~vlh~~~d~ 205 (296)
+|.=-+|.-.++
T Consensus 182 mCNPPFy~s~~e 193 (299)
T PF05971_consen 182 MCNPPFYSSQEE 193 (299)
T ss_dssp EE-----SS---
T ss_pred ecCCccccChhh
Confidence 998777754443
No 280
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.89 E-value=0.13 Score=47.72 Aligned_cols=133 Identities=18% Similarity=0.151 Sum_probs=81.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCC-eeEEeccCCCCC---C-ccceeEehhhhc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLAN-LKYVGGDMFEAI---S-PADAVLLKWILH 200 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r-i~~~~~D~~~~~---p-~~D~v~~~~vlh 200 (296)
....+.|+|...|.|.++.+|.+. | +.+... |..-...-. ..+| .--+-+|..+++ | .||++-..+++-
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhh
Confidence 345689999999999999999764 3 444443 321111000 1111 112345666644 4 399999998887
Q ss_pred cCCch-HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCce
Q 022515 201 DWNDE-ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSD 279 (296)
Q Consensus 201 ~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~ 279 (296)
.+.+. +...+|-++-|.|+| ||.++|-|..- ...+++.++..-.++.
T Consensus 439 ~~~~rC~~~~illEmDRILRP---~G~~iiRD~~~-----------------------------vl~~v~~i~~~lrW~~ 486 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRP---GGWVIIRDTVD-----------------------------VLEKVKKIAKSLRWEV 486 (506)
T ss_pred hhcccccHHHHHHHhHhhcCC---CceEEEeccHH-----------------------------HHHHHHHHHHhCcceE
Confidence 66543 456889999999999 89988866321 2345666777777765
Q ss_pred eEEEEcCC---cceEEEEeC
Q 022515 280 YKIIPILG---LRSLIEVYP 296 (296)
Q Consensus 280 ~~~~~~~~---~~~vi~~~~ 296 (296)
..+..-.+ ...|+.++|
T Consensus 487 ~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 487 RIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEEecCCCCCCCceEEEEEC
Confidence 54433332 245666554
No 281
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=92.86 E-value=0.042 Score=33.86 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=32.8
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++.|...|.+ +|.++.|||+.+|+++..+.++|......|
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~s~~~vs~hL~~L~~~g 43 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGLSQSTVSHHLKKLREAG 43 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CCCchhhHHHhccccchHHHHHHHHHHHCc
Confidence 5667788886 899999999999999999999887766544
No 282
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=92.70 E-value=0.13 Score=47.89 Aligned_cols=55 Identities=22% Similarity=0.377 Sum_probs=45.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCC
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMF 184 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~ 184 (296)
++....+||+=||||.++.++++. -.+++++++ |+.++-|++ ...+.+|++|-..
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 667789999999999999888876 458999998 988888876 5688999998333
No 283
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.59 E-value=0.12 Score=37.96 Aligned_cols=86 Identities=13% Similarity=0.226 Sum_probs=44.2
Q ss_pred ccceeEehhhh---c-cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhh--hhhhhhhhhcCccc
Q 022515 189 PADAVLLKWIL---H-DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQL--FFDMLMMVLLTGTE 262 (296)
Q Consensus 189 ~~D~v~~~~vl---h-~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~ 262 (296)
.||+|++.+|- | +|.|+....+++++++.|+| |.++|+|.-. +..... -..-.+......-.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEpQ~--------w~sY~~~~~~~~~~~~n~~~i~ 68 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEPQP--------WKSYKKAKRLSEEIRENYKSIK 68 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE-----------HHHHHTTTTS-HHHHHHHHH--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeCCC--------cHHHHHHhhhhHHHHhHHhceE
Confidence 38999886653 2 36788999999999999999 5667777421 111110 00000001111222
Q ss_pred cCHHHHHHHHHh--cCCceeEEEEcC
Q 022515 263 RDEKEWTKLFTY--AGFSDYKIIPIL 286 (296)
Q Consensus 263 rt~~e~~~ll~~--aGf~~~~~~~~~ 286 (296)
..++++.+.|.+ .||+.++....+
T Consensus 69 lrP~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 69 LRPDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp --GGGHHHHHTSTTT---EEEEE---
T ss_pred EChHHHHHHHHhcccceEEEEEcccC
Confidence 355678888887 599988765553
No 284
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.34 E-value=0.3 Score=48.07 Aligned_cols=96 Identities=21% Similarity=0.194 Sum_probs=57.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHC-------C-----CCeEEeccc-h---hHhhccC-----------C-----------
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAF-------P-----KLECTCFDL-P---HVVNGLD-----------S----------- 171 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~-----------~----------- 171 (296)
..-+|+|+|=|+|......++.+ | .++++.++. | +.+..+. +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34699999999999887777554 3 467888885 3 1111110 0
Q ss_pred ------CCC--CeeEEeccCCCC---CC-ccceeEehhhh-ccCCchHHHHHHHHHHHhcccCCCCcEEE
Q 022515 172 ------DLA--NLKYVGGDMFEA---IS-PADAVLLKWIL-HDWNDEECVKILKKCKEAITSDGKKGKVI 228 (296)
Q Consensus 172 ------~~~--ri~~~~~D~~~~---~p-~~D~v~~~~vl-h~~~d~~~~~iL~~~~~aL~p~~~gG~ll 228 (296)
..+ ++++.-||..+. +. .+|++++--.- ..-|+-=...+|+++++.++| ||++.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEE
Confidence 122 334556787652 22 48999884321 111111124789999999998 77665
No 285
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=92.28 E-value=0.36 Score=36.62 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=51.8
Q ss_pred CeeEEeccCCC---CC-CccceeEehhhh-----ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhh
Q 022515 175 NLKYVGGDMFE---AI-SPADAVLLKWIL-----HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE 245 (296)
Q Consensus 175 ri~~~~~D~~~---~~-p~~D~v~~~~vl-----h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~ 245 (296)
++++.-||..+ .+ ..+|++++.-.- ..|+ .++|+++++.++| ||.+.-..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs----~e~~~~l~~~~~~---~~~l~Tys-------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWS----EELFKKLARLSKP---GGTLATYS-------------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSS----HHHHHHHHHHEEE---EEEEEES---------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCC----HHHHHHHHHHhCC---CcEEEEee--------------
Confidence 35566777765 22 248888875322 1233 3689999999999 66543211
Q ss_pred hhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 246 TQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 246 ~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
....+++-|.++||.+.+....++-..++.+.+
T Consensus 91 ------------------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 91 ------------------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp -------------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred ------------------chHHHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 224578899999999888777776677777653
No 286
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=91.78 E-value=0.73 Score=33.09 Aligned_cols=83 Identities=17% Similarity=0.295 Sum_probs=51.8
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh--hcCcccc-------CHHH
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV--LLTGTER-------DEKE 267 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~r-------t~~e 267 (296)
.+|-|++.++..++|+++...-+ +++++.=. | .. .++.+...+ .+.+..| .+++
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~-----~~~ifTfA--P--~T--------~~L~~m~~iG~lFP~~dRsp~i~~~~e~~ 65 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR-----GSLIFTFA--P--RT--------PLLALMHAIGKLFPRPDRSPRIYPHREED 65 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhcc-----CcEEEEEC--C--CC--------HHHHHHHHHhccCCCCCCCCcEEEeCHHH
Confidence 45567899999999999987654 56555321 1 11 122222222 1333333 6799
Q ss_pred HHHHHHhcCCceeEEEEcC-Ccc--eEEEEeC
Q 022515 268 WTKLFTYAGFSDYKIIPIL-GLR--SLIEVYP 296 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~~~~~-~~~--~vi~~~~ 296 (296)
+.+.++++||++.+...+. +++ .++|++|
T Consensus 66 l~~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 66 LRRALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHHHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 9999999999999888775 332 3555543
No 287
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.62 E-value=0.23 Score=45.37 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=61.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC-Cc--cceeEehhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI-SP--ADAVLLKWI 198 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~-p~--~D~v~~~~v 198 (296)
+...|||||.|||.++.-.+++-.+ .++.++. .+|.+.|++ ..++|+++.---.+ .+ |. +|+++--.+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4468999999999999887777633 5899998 888888876 68888887643333 22 22 677665544
Q ss_pred hccCCchHHHHHHHHHHHhcc
Q 022515 199 LHDWNDEECVKILKKCKEAIT 219 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~ 219 (296)
.-..--+.+..-++++++.|.
T Consensus 145 dtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhccccchhHHHHHHHhc
Confidence 433334445666777777664
No 288
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.49 E-value=1.2 Score=41.82 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=64.7
Q ss_pred CCEEEEecCCchHHHHHHHHH----CCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515 131 LNSLVDVGGGIGTAAKAIAKA----FPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--PADAVLLKW 197 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~~D~v~~~~ 197 (296)
...|+=+|+|-|-+..+.++. ...++.+.++- |..+...+. ..+|++++..||.+ ..| ++|+++. -
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence 567889999999998776663 34667888887 776654433 78999999999998 544 4787765 3
Q ss_pred hhccCCchH-HHHHHHHHHHhccc
Q 022515 198 ILHDWNDEE-CVKILKKCKEAITS 220 (296)
Q Consensus 198 vlh~~~d~~-~~~iL~~~~~aL~p 220 (296)
.|--|.|.+ ..+-|.-+-+.|||
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkp 470 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKP 470 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCC
Confidence 444455443 34568888888999
No 289
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=90.85 E-value=2.8 Score=37.95 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=70.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCC--CeEEeccc-hhHhh----ccCC-CCCCeeEEeccCCC---CCC---cccee
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPK--LECTCFDL-PHVVN----GLDS-DLANLKYVGGDMFE---AIS---PADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~----~a~~-~~~ri~~~~~D~~~---~~p---~~D~v 193 (296)
..++.+|||.-.+.|.=+.++++.-++ ..++.+|. +.=+. +.++ ...++..+..|... ..+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 567799999999999999999997765 56689998 54333 3333 34446777777543 122 28888
Q ss_pred Ee------hhhh-------ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 194 LL------KWIL-------HDWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 194 ~~------~~vl-------h~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
++ ..++ ..+..++ -.++|.++.+.+|| ||+|+-.......
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~ 293 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTP 293 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCch
Confidence 76 2333 2333221 25789999999999 8887766654443
No 290
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.55 E-value=3.7 Score=32.82 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=75.0
Q ss_pred EecCCchHHHHHHHHHCC---CCeEEeccc-hhHhhccCC--------CCCCeeEEe-ccCCC---CC--C--ccceeEe
Q 022515 136 DVGGGIGTAAKAIAKAFP---KLECTCFDL-PHVVNGLDS--------DLANLKYVG-GDMFE---AI--S--PADAVLL 195 (296)
Q Consensus 136 DvGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~-~D~~~---~~--p--~~D~v~~ 195 (296)
=||=|.=.++.+|++.++ ++.+|.+|. .++.+.... ....+.+.- -|..+ .. . .||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367788888899999987 567888888 555555442 123333322 24433 12 1 4999998
Q ss_pred hhhhccCC----c-------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccC
Q 022515 196 KWILHDWN----D-------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERD 264 (296)
Q Consensus 196 ~~vlh~~~----d-------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt 264 (296)
.+---... . +-...+|+.+.+.|++ +|.|.|.-...++ ++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~~~p--------------------------y~ 132 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKDGQP--------------------------YD 132 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCC--------------------------Cc
Confidence 65422200 1 1234678889999999 8988886532211 11
Q ss_pred HHHHHHHHHhcCCceeEEEEcC
Q 022515 265 EKEWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~~~~~~ 286 (296)
.=.+.++.+++||...+..+..
T Consensus 133 ~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cccHHHHHHhcCCEEEEEecCC
Confidence 1134577888999988877653
No 291
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=90.54 E-value=0.15 Score=31.35 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=32.3
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.+..|+..|.+. ++.|..|||+.+|++...+.+.+..+...|
T Consensus 4 ~~~~Il~~l~~~-~~~t~~ela~~~~is~~tv~~~l~~L~~~g 45 (48)
T PF13412_consen 4 TQRKILNYLREN-PRITQKELAEKLGISRSTVNRYLKKLEEKG 45 (48)
T ss_dssp HHHHHHHHHHHC-TTS-HHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCc
Confidence 355677888874 679999999999999999988887776654
No 292
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=90.35 E-value=0.57 Score=36.23 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=62.9
Q ss_pred eEEeccc-hhHhhccCC------CCCCeeEEeccCCC---CCC--ccceeEehhhhccCC---------chHHHHHHHHH
Q 022515 156 ECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE---AIS--PADAVLLKWILHDWN---------DEECVKILKKC 214 (296)
Q Consensus 156 ~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~---~~p--~~D~v~~~~vlh~~~---------d~~~~~iL~~~ 214 (296)
++.++|+ ++.++.+++ ..+|++++..+=.+ -.+ ..|+++++. -.+| .+.....|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5789999 889988876 45789998754333 223 478777642 2233 22356889999
Q ss_pred HHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 215 KEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 215 ~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
.+.|+| ||.|.|+-..-.+.+.. +. ....+|.+-|.+..|.+.....+
T Consensus 79 l~lL~~---gG~i~iv~Y~GH~gG~e----E~----------------~av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 79 LELLKP---GGIITIVVYPGHPGGKE----ES----------------EAVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp HHHEEE---EEEEEEEE--STCHHHH----HH----------------HHHHHHHHTS-TTTEEEEEEEES
T ss_pred HHhhcc---CCEEEEEEeCCCCCCHH----HH----------------HHHHHHHHhCCcceEEEEEEEcc
Confidence 999999 88888877643332110 00 03345555556667888777765
No 293
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.32 E-value=0.51 Score=43.02 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=52.7
Q ss_pred CCCCeeEEeccCCC---CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 172 DLANLKYVGGDMFE---AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 172 ~~~ri~~~~~D~~~---~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
..+|++++.+++.+ ..| .+|.+++..++-.+++++..+.++.+.++++| ||+++.-....+.
T Consensus 273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 46999999998877 232 49999999999888999999999999999999 9999987765544
No 294
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.16 E-value=1.5 Score=40.09 Aligned_cols=100 Identities=22% Similarity=0.228 Sum_probs=62.8
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCC-eeEEecc-CCCC---C-C--ccceeEeh
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LAN-LKYVGGD-MFEA---I-S--PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~r-i~~~~~D-~~~~---~-p--~~D~v~~~ 196 (296)
..++.+||.+|+|. |..+..+++.....+++++|. ++..+.+++. ... +.+...+ +.+. . + ++|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45678999999988 999999999885446888887 7777776542 111 1111121 2111 1 1 37777653
Q ss_pred h---------------hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 197 W---------------ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 197 ~---------------vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
- +|+-.++. ...++.+.+.++| +|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence 1 12211222 3568888999999 899988864
No 295
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=89.85 E-value=1.4 Score=33.38 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=46.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCC----CccceeEehhhhccCC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAI----SPADAVLLKWILHDWN 203 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~----p~~D~v~~~~vlh~~~ 203 (296)
.+..+|++||-|.=.-....++.+ +..+++.|+ +. .+ ...+.++.-|+++|- .++|+|++.+ |
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a---~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----P 79 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KA---PEGVNFVVDDIFNPNLEIYEGADLIYSIR-----P 79 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S----------STTEE---SSS--HHHHTTEEEEEEES------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---cc---ccCcceeeecccCCCHHHhcCCcEEEEeC-----C
Confidence 345699999977665554444443 589999998 55 22 267899999999953 2589998865 5
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 204 DEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 204 d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
..+...-+.++++.. |.-++|.-
T Consensus 80 P~El~~~il~lA~~v-----~adlii~p 102 (127)
T PF03686_consen 80 PPELQPPILELAKKV-----GADLIIRP 102 (127)
T ss_dssp -TTSHHHHHHHHHHH-----T-EEEEE-
T ss_pred ChHHhHHHHHHHHHh-----CCCEEEEC
Confidence 555566666777666 45555544
No 296
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=89.81 E-value=1.2 Score=38.91 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=70.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC----CCc-cceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA----ISP-ADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~----~p~-~D~v~~ 195 (296)
..++.+|||..++.|.=+.+++...+ ..+++..|+ +.=+...++ ....+.....|..+. .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678999999999999999999876 568899998 654443332 456677777776652 223 888877
Q ss_pred ------hhhhccCCc-------hH-------HHHHHHHHHHhc----ccCCCCcEEEEEeeee
Q 022515 196 ------KWILHDWND-------EE-------CVKILKKCKEAI----TSDGKKGKVIIIDMIR 234 (296)
Q Consensus 196 ------~~vlh~~~d-------~~-------~~~iL~~~~~aL----~p~~~gG~lli~e~~~ 234 (296)
..++..-++ ++ -.++|+++.+.+ +| ||+++-.....
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccH
Confidence 222322221 11 257899999999 99 78776655433
No 297
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.35 E-value=6.2 Score=29.33 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=59.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCC----CccceeEehhhhccCC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAI----SPADAVLLKWILHDWN 203 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~----p~~D~v~~~~vlh~~~ 203 (296)
...++|++||-|-=......++++ +..++..|+ +. .+ ...++++.-|+++|- .++|+|++-. |
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~---~a---~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----p 79 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK---TA---PEGLRFVVDDITNPNISIYEGADLIYSIR-----P 79 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc---cC---cccceEEEccCCCccHHHhhCccceeecC-----C
Confidence 355699999888766555555554 478888998 44 22 266899999999962 3589888854 5
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 204 DEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 204 d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.++....+-++.++.+ ..++|.-
T Consensus 80 ppEl~~~ildva~aVg-----a~l~I~p 102 (129)
T COG1255 80 PPELQSAILDVAKAVG-----APLYIKP 102 (129)
T ss_pred CHHHHHHHHHHHHhhC-----CCEEEEe
Confidence 6666666667777764 4555543
No 298
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=89.15 E-value=0.16 Score=34.14 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=30.6
Q ss_pred cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC
Q 022515 40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD 79 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~ 79 (296)
|-+.|.+. +.+|+.|||..+++++..++..|..|.+.|.
T Consensus 5 i~~~l~~~-~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~ 43 (69)
T PF09012_consen 5 IRDYLRER-GRVSLAELAREFGISPEAVEAMLEQLIRKGY 43 (69)
T ss_dssp HHHHHHHS--SEEHHHHHHHTT--HHHHHHHHHHHHCCTS
T ss_pred HHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 44567663 7899999999999999999999999998775
No 299
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=88.35 E-value=0.42 Score=32.01 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=34.7
Q ss_pred HHHcCcchhcccCCC-CCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 35 AIQLGIPDIISKHGK-PMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 35 a~~l~lf~~L~~~~~-~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
..+-.|+..|.+.++ ++|+.|||+.+|++...+.+.|...-..|
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G 50 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKG 50 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 345567788877533 29999999999999999999888776655
No 300
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=88.18 E-value=1.9 Score=37.44 Aligned_cols=123 Identities=15% Similarity=0.247 Sum_probs=72.8
Q ss_pred EEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCCCCCCeeEEeccCCC-C----CCccceeEehhhhccCC--
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A----ISPADAVLLKWILHDWN-- 203 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~----~p~~D~v~~~~vlh~~~-- 203 (296)
+++|+-||.|.++..+.+. +.+ +..+|. +..++..+..... .+..+|+.+ . .+++|+++.+--...++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 6899999999999988876 344 567888 7776655531111 145667766 2 34589998866544433
Q ss_pred -------chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515 204 -------DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG 276 (296)
Q Consensus 204 -------d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG 276 (296)
|+. -.++.++.+.++.. .-+++++|.+..-... .......++.+.|++.|
T Consensus 79 g~~~~~~d~r-~~L~~~~~~~i~~~--~P~~~v~ENV~g~~~~--------------------~~~~~~~~i~~~l~~~G 135 (275)
T cd00315 79 GKRKGFEDTR-GTLFFEIIRILKEK--KPKYFLLENVKGLLTH--------------------DNGNTLKVILNTLEELG 135 (275)
T ss_pred hhcCCCCCch-HHHHHHHHHHHHhc--CCCEEEEEcCcchhcc--------------------CchHHHHHHHHHHHhCC
Confidence 222 22333333333321 2267888865432110 01124567888889999
Q ss_pred CceeE
Q 022515 277 FSDYK 281 (296)
Q Consensus 277 f~~~~ 281 (296)
|.+..
T Consensus 136 Y~~~~ 140 (275)
T cd00315 136 YNVYW 140 (275)
T ss_pred cEEEE
Confidence 87643
No 301
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.87 E-value=1.3 Score=37.05 Aligned_cols=93 Identities=22% Similarity=0.368 Sum_probs=63.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC----CC-----CeEEeccchhHhhccCCCCCCeeEEeccCCCC---------CC-
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF----PK-----LECTCFDLPHVVNGLDSDLANLKYVGGDMFEA---------IS- 188 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~----p~-----~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~---------~p- 188 (296)
+.+-.|++|+-...|.++.-|.++. |. -+++.+|+..|. ..+.|.-+.+|+.++ ++
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----PI~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----PIEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----ccCceEEeecccCCHhHHHHHHHHhCC
Confidence 5677899999999999999888764 21 138889986555 344466677888772 22
Q ss_pred -ccceeEehh-----hhccCCchH----HHHHHHHHHHhcccCCCCcEEE
Q 022515 189 -PADAVLLKW-----ILHDWNDEE----CVKILKKCKEAITSDGKKGKVI 228 (296)
Q Consensus 189 -~~D~v~~~~-----vlh~~~d~~----~~~iL~~~~~aL~p~~~gG~ll 228 (296)
++|+|++-. -+|+++.-- ....|.-...+|+| ||..+
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FV 160 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFV 160 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeee
Confidence 489999843 467765321 22345555678998 77654
No 302
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=86.47 E-value=0.58 Score=35.07 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 26 FINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 26 ~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.-..++|.--.++.|+..|.+. ++.++.|||+.+++++..+.+||+..-..|
T Consensus 7 ~~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~lsqstvS~HL~~L~~AG 58 (117)
T PRK10141 7 LQLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQSQPKISRHLALLRESG 58 (117)
T ss_pred HHHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3456677778999999999752 689999999999999999999987765544
No 303
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=85.19 E-value=1.4 Score=37.74 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=27.4
Q ss_pred CCEEEEecCCchHHHHHHHHHCC--------CCeEEeccc-hhHhh
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFP--------KLECTCFDL-PHVVN 167 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p--------~~~~~~~D~-~~~~~ 167 (296)
.-+|+++|+|+|.++..+++... .++++.++. |...+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~ 64 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRE 64 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHH
Confidence 46999999999999999988543 358999998 55543
No 304
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=85.17 E-value=1.6 Score=39.11 Aligned_cols=65 Identities=25% Similarity=0.408 Sum_probs=42.2
Q ss_pred cCchHHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC----C----CCeEEeccc-hhHhh
Q 022515 97 DEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF----P----KLECTCFDL-PHVVN 167 (296)
Q Consensus 97 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~----p----~~~~~~~D~-~~~~~ 167 (296)
..|+....|.+.++... . .+...+. .+....+|++|.|+|.++..+++.. | .+++.+++. |+..+
T Consensus 50 TApels~lFGella~~~---~-~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 50 TAPELSQLFGELLAEQF---L-QLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred echhHHHHHHHHHHHHH---H-HHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 34666666766554322 1 1222222 3456789999999999999887743 4 568999998 65544
No 305
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=85.00 E-value=0.43 Score=28.62 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=25.8
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHH
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLR 72 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~ 72 (296)
++..|.+.|.++ +..|..+||+.+|+++..+.+++.
T Consensus 4 ~D~~Il~~Lq~d-~r~s~~~la~~lglS~~~v~~Ri~ 39 (42)
T PF13404_consen 4 LDRKILRLLQED-GRRSYAELAEELGLSESTVRRRIR 39 (42)
T ss_dssp HHHHHHHHHHH--TTS-HHHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCccHHHHHHHHCcCHHHHHHHHH
Confidence 445677788774 789999999999999987766443
No 306
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=84.76 E-value=2.1 Score=36.86 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=31.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-----CCCeEEeccchh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-----PKLECTCFDLPH 164 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-----p~~~~~~~D~~~ 164 (296)
+.+...++|+|||.|.++..+.... +...++.+|...
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 5677899999999999999999988 567899999743
No 307
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=84.67 E-value=1.1 Score=40.35 Aligned_cols=42 Identities=24% Similarity=0.529 Sum_probs=33.6
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccch-hHhhccC
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLP-HVVNGLD 170 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~ 170 (296)
+.+..+++|||.|.|+++.-+.-.| ++++.++|-. ...+.|+
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHH
Confidence 6678899999999999999887777 7899999973 3444443
No 308
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=84.51 E-value=0.7 Score=32.53 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=32.9
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|++.|.+.++++|+.|||+.+|++...+.+.+......|
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g 48 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELG 48 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 45677777643689999999999999999999887776544
No 309
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=84.36 E-value=1.6 Score=36.46 Aligned_cols=47 Identities=23% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh
Q 022515 26 FINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ 76 (296)
Q Consensus 26 ~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~ 76 (296)
-.+-.+|..|.++|-||.= ..+++.|||+.+|+.+..+..+|+...+
T Consensus 158 drQ~~vL~~A~~~GYFd~P----R~~~l~dLA~~lGISkst~~ehLRrAe~ 204 (215)
T COG3413 158 DRQLEVLRLAYKMGYFDYP----RRVSLKDLAKELGISKSTLSEHLRRAER 204 (215)
T ss_pred HHHHHHHHHHHHcCCCCCC----ccCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3467799999999999953 4689999999999999988777766543
No 310
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=84.15 E-value=0.41 Score=30.32 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=25.8
Q ss_pred cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHh
Q 022515 40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTW 74 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~ 74 (296)
|+..|.+.++++|+++||+.++++.+-+.+.+...
T Consensus 5 il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L 39 (55)
T PF08279_consen 5 ILKLLLESKEPITAKELAEELGVSRRTIRRDIKEL 39 (55)
T ss_dssp HHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHH
Confidence 45556333467999999999999999888866544
No 311
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=83.76 E-value=1.3 Score=37.82 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=50.8
Q ss_pred CCCEEEEecCCchHHHHH---HHHHC--CCCeEEeccc-hhHhhc------------------------------cCC--
Q 022515 130 GLNSLVDVGGGIGTAAKA---IAKAF--PKLECTCFDL-PHVVNG------------------------------LDS-- 171 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~---l~~~~--p~~~~~~~D~-~~~~~~------------------------------a~~-- 171 (296)
-++.|++.|+=.|..++. +++.+ ++-++.++|. ..+-+. ..+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 357899999988876644 34443 4456778774 322111 000
Q ss_pred -CCCCeeEEeccCCCCCCc---cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 172 -DLANLKYVGGDMFEAISP---ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 172 -~~~ri~~~~~D~~~~~p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
..+++.++.|.|.+..|. -.+.++ ++=-++- +.....|..++..|.| ||.|++-|
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll-~lD~DlY-esT~~aLe~lyprl~~---GGiIi~DD 212 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALL-HLDCDLY-ESTKDALEFLYPRLSP---GGIIIFDD 212 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEE-EE---SH-HHHHHHHHHHGGGEEE---EEEEEESS
T ss_pred CCcccEEEECCcchhhhccCCCccEEEE-EEeccch-HHHHHHHHHHHhhcCC---CeEEEEeC
Confidence 247899999999774442 122222 1101222 2346889999999999 55555544
No 312
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=83.64 E-value=1.7 Score=37.37 Aligned_cols=70 Identities=24% Similarity=0.280 Sum_probs=45.1
Q ss_pred HHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhccc
Q 022515 144 AAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITS 220 (296)
Q Consensus 144 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p 220 (296)
++.+|.++.+..+++++|. +..++.|.+ .+-+.-...+ .+...++|+|++. .|......+++++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~-~g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE-LGIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH-TTSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH-CCCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcCC
Confidence 3567888888999999999 888888853 2222222222 2234468999885 3556677888888888877
No 313
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.51 E-value=5.2 Score=36.10 Aligned_cols=95 Identities=22% Similarity=0.210 Sum_probs=66.5
Q ss_pred CCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEecc-C----CC-CCC-ccceeEehhhh
Q 022515 131 LNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGD-M----FE-AIS-PADAVLLKWIL 199 (296)
Q Consensus 131 ~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D-~----~~-~~p-~~D~v~~~~vl 199 (296)
..+|+=+|+|+ |.++..+++.+.-.++++.|. +.=++.|++ ..+.+.....+ . .+ ..+ ++|+++=..-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 34999999996 666688888888889999999 888888875 22333333222 1 11 112 4898876443
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
....+..+.++++| ||++.++-....+
T Consensus 248 -------~~~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 22468888999999 9999998876555
No 314
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=81.93 E-value=1.1 Score=37.34 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=31.9
Q ss_pred cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
|...|..+ +|+|+.|||+++|+++..++++|......|
T Consensus 16 il~lL~~~-g~~sa~elA~~Lgis~~avR~HL~~Le~~G 53 (218)
T COG2345 16 ILELLKKS-GPVSADELAEELGISPMAVRRHLDDLEAEG 53 (218)
T ss_pred HHHHHhcc-CCccHHHHHHHhCCCHHHHHHHHHHHHhCc
Confidence 44455543 899999999999999999999999887766
No 315
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=81.83 E-value=1.7 Score=36.39 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh
Q 022515 26 FINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ 76 (296)
Q Consensus 26 ~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~ 76 (296)
+-..++|...++..|.++|... +|+.+.|||+++|++..-+...+....+
T Consensus 14 ~dv~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgLpqst~s~~ik~Le~ 63 (308)
T COG4189 14 LDVLKALASKVRVAILQLLHRK-GPLNVNEIAEALGLPQSTMSANIKVLEK 63 (308)
T ss_pred chHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCchhhhhhhHHHHHh
Confidence 3356788899999999999873 8999999999999999887765554443
No 316
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=81.50 E-value=1.6 Score=29.96 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=33.5
Q ss_pred cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC
Q 022515 40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD 79 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~ 79 (296)
|=|+|+.. |-.++.+||..++++++.++-+|..|.+.|+
T Consensus 7 lRd~l~~~-gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGk 45 (78)
T PRK15431 7 VRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMGK 45 (78)
T ss_pred HHHHHHHc-CcccHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 34667664 7899999999999999999999999998775
No 317
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=81.49 E-value=0.8 Score=31.29 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=23.4
Q ss_pred cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHH
Q 022515 40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRT 73 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~ 73 (296)
++..|+. |.|+|.++||.++|.+...++..|..
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~~~e~v~~~L~~ 61 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGWPVEEVRAALAA 61 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT--HHHHHHHHHH
T ss_pred HHHHHHc-CCCcCHHHHHHHHCCCHHHHHHHHHh
Confidence 6778887 68999999999999998887665544
No 318
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=81.37 E-value=3.1 Score=38.59 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=60.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCC--CeEEeccc-hhHhhccCC-C-----CCCeeEEeccCCC---CCC---ccceeE
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPK--LECTCFDL-PHVVNGLDS-D-----LANLKYVGGDMFE---AIS---PADAVL 194 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-~-----~~ri~~~~~D~~~---~~p---~~D~v~ 194 (296)
.+..+.|+|.|.|.-.-++....+. -.++.+|. -.|...... . ..++.....-|+. +.+ +||+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 3467888888776655545444444 35788898 566655443 1 1222222212332 322 399999
Q ss_pred ehhhhccCCchH-HHHHHHHHH-HhcccCCCCcEEEEEeee
Q 022515 195 LKWILHDWNDEE-CVKILKKCK-EAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 195 ~~~vlh~~~d~~-~~~iL~~~~-~aL~p~~~gG~lli~e~~ 233 (296)
+.++||+..... ...+.+..+ ...++ |+.++|+|.-
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g 317 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKG 317 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecC
Confidence 999999987543 234444444 55566 8999999853
No 319
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=81.29 E-value=1.1 Score=32.83 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=34.8
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.+..|+..|.+. ++.|..+||+.+|+++..+.+.+..+...|
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~s~~tv~~~l~~L~~~g 45 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGLSPSTVHNRVKRLEEEG 45 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 356677788763 689999999999999999999888877655
No 320
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=80.92 E-value=1.9 Score=36.44 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=45.3
Q ss_pred HHHHHhcccccCCC--CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhcc-------CC-------CCCCeeEEe
Q 022515 118 SVMIHKCKDVFEGL--NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGL-------DS-------DLANLKYVG 180 (296)
Q Consensus 118 ~~~~~~~~~~~~~~--~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~-------~~~ri~~~~ 180 (296)
+.+++... ++++ .+|||.=+|-|.-+.-++.. +.++++++. |-+.... .+ ...||+++.
T Consensus 63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 45666665 4444 49999999999999888765 779999998 4433221 11 136899999
Q ss_pred ccCCC--CC--CccceeEehh
Q 022515 181 GDMFE--AI--SPADAVLLKW 197 (296)
Q Consensus 181 ~D~~~--~~--p~~D~v~~~~ 197 (296)
+|..+ .. ..+|+|++-=
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DP 159 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDP 159 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--
T ss_pred CCHHHHHhhcCCCCCEEEECC
Confidence 99887 33 2599998843
No 321
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=80.90 E-value=16 Score=30.40 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=56.3
Q ss_pred CCCEEEEecCCch----HHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC----CCCccceeE
Q 022515 130 GLNSLVDVGGGIG----TAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE----AISPADAVL 194 (296)
Q Consensus 130 ~~~~vLDvGgG~G----~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~----~~p~~D~v~ 194 (296)
+.+.|+++.++.| .++.+.+.+.-+-+.+.+-. ++-....++ ..+.++|+.|+-.+ .+.+.|+++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 4568999965433 34444555666666665544 332222222 35667998887433 244688887
Q ss_pred ehhhhccCCchHHH-HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 195 LKWILHDWNDEECV-KILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 195 ~~~vlh~~~d~~~~-~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
. |...++.. ++|+.+. +.| .|.+++......
T Consensus 121 V-----Dc~~~d~~~~vl~~~~--~~~---~GaVVV~~Na~~ 152 (218)
T PF07279_consen 121 V-----DCKREDFAARVLRAAK--LSP---RGAVVVCYNAFS 152 (218)
T ss_pred E-----eCCchhHHHHHHHHhc--cCC---CceEEEEecccc
Confidence 7 44555555 6777543 455 578888776554
No 322
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=80.76 E-value=1.3 Score=35.36 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=38.1
Q ss_pred HHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC
Q 022515 35 AIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD 79 (296)
Q Consensus 35 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~ 79 (296)
.++..|..+|.++ +..|..|||+++|+++..+.+++..+..+|-
T Consensus 14 ~~D~~IL~~Lq~d-~R~s~~eiA~~lglS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 14 RIDRNILNELQKD-GRISNVELSKRVGLSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHhccC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 4677889999874 8999999999999999999998888887763
No 323
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=80.47 E-value=1.2 Score=35.03 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=37.0
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD 79 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~ 79 (296)
.+..|.+.|..+ +..|..+||+++|+++..+.+++..+..+|-
T Consensus 10 ~D~~Il~~Lq~d-~R~s~~eiA~~lglS~~tV~~Ri~rL~~~Gv 52 (153)
T PRK11179 10 LDRGILEALMEN-ARTPYAELAKQFGVSPGTIHVRVEKMKQAGI 52 (153)
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 567788889874 7899999999999999999998888887763
No 324
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=79.75 E-value=6.9 Score=33.99 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=47.5
Q ss_pred EEEEecCCc--hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHH
Q 022515 133 SLVDVGGGI--GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVK 209 (296)
Q Consensus 133 ~vLDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~ 209 (296)
+|.=||+|. |.++..|.++ +.+++++|. ++.++.+.+ ...+.....+. +...++|+|++. .|.....+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~-~g~~~~~~~~~-~~~~~aDlVila-----vp~~~~~~ 72 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIE-RGLVDEASTDL-SLLKDCDLVILA-----LPIGLLLP 72 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-CCCcccccCCH-hHhcCCCEEEEc-----CCHHHHHH
Confidence 466677664 3455555444 568999998 777766642 11121111111 123358999885 36666678
Q ss_pred HHHHHHHhccc
Q 022515 210 ILKKCKEAITS 220 (296)
Q Consensus 210 iL~~~~~aL~p 220 (296)
+++++...++|
T Consensus 73 ~~~~l~~~l~~ 83 (279)
T PRK07417 73 PSEQLIPALPP 83 (279)
T ss_pred HHHHHHHhCCC
Confidence 88999888887
No 325
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=79.72 E-value=0.49 Score=31.50 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=31.9
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
|..++..|-.. ++.|+.|||+.+|++...+.+.|....+.|
T Consensus 10 E~~vy~~Ll~~-~~~t~~eIa~~l~i~~~~v~~~L~~L~~~G 50 (68)
T PF01978_consen 10 EAKVYLALLKN-GPATAEEIAEELGISRSTVYRALKSLEEKG 50 (68)
T ss_dssp HHHHHHHHHHH-CHEEHHHHHHHHTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44455555332 799999999999999999999888877655
No 326
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=78.75 E-value=3.1 Score=36.21 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=51.0
Q ss_pred hhHhhccCCCCCCeeEEeccCCC-----CCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 163 PHVVNGLDSDLANLKYVGGDMFE-----AISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 163 ~~~~~~a~~~~~ri~~~~~D~~~-----~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+.+-+.+++...|+.++.+|+.+ +..+.|-|++..+-..++|.+.-.++.++.+-+.| |.++++-.
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~---gA~VifRt 366 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA---GARVIFRT 366 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC---CcEEEEec
Confidence 44444444457889999999876 23358999999988778899999999999999998 66665543
No 327
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=78.41 E-value=4.5 Score=32.90 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=55.1
Q ss_pred EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------------------CCCCeeEEeccCCCCCCcccee
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------------------DLANLKYVGGDMFEAISPADAV 193 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~ri~~~~~D~~~~~p~~D~v 193 (296)
+|.=+|.|.=.+..+++-...+.+++++|. ++.++...+ ...|+.+. -|+.+....+|++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccceE
Confidence 466677776555544444444789999999 776665433 13444443 2222223357887
Q ss_pred EehhhhccCC----c-hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 194 LLKWILHDWN----D-EECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 194 ~~~~vlh~~~----d-~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
++.----..+ | .....+++.+.+.+++ |.++|.+...+.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~----~~lvV~~STvpp 124 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRP----GDLVVIESTVPP 124 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCS----CEEEEESSSSST
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhh----cceEEEccEEEE
Confidence 7632111101 1 2246778899999997 899999877654
No 328
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=78.12 E-value=1.7 Score=32.88 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=39.9
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC----CChhhhhcCCCchhhcccCch
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD----PTPFDTAHGKTLWEYAGDEPK 100 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~ 100 (296)
..++.+|-+..+|.|+++||+.++.+.....++|...+..|- ..+. -.|...|-|-..+++
T Consensus 30 v~v~~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~~~--~~Ggy~yiY~~i~~e 94 (126)
T COG3355 30 VEVYKALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKVNL--KGGGYYYLYKPIDPE 94 (126)
T ss_pred HHHHHHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeeecc--CCCceeEEEecCCHH
Confidence 334444431138999999999999999999999988876552 0111 235566666555543
No 329
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.05 E-value=9.9 Score=33.50 Aligned_cols=84 Identities=18% Similarity=0.089 Sum_probs=46.7
Q ss_pred CCEEEEecCCc-h-HHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHH
Q 022515 131 LNSLVDVGGGI-G-TAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEEC 207 (296)
Q Consensus 131 ~~~vLDvGgG~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~ 207 (296)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+++...... ...+..+...++|+|++.- +....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~-~~~~~~~~~~~aDvViiav-----p~~~~ 79 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDR-VTTSAAEAVKGADLVILCV-----PVGAS 79 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCce-ecCCHHHHhcCCCEEEECC-----CHHHH
Confidence 35788898776 3 33333443322247889998 766666543111111 1112111234589888753 44444
Q ss_pred HHHHHHHHHhccc
Q 022515 208 VKILKKCKEAITS 220 (296)
Q Consensus 208 ~~iL~~~~~aL~p 220 (296)
..+++.+...+++
T Consensus 80 ~~v~~~l~~~l~~ 92 (307)
T PRK07502 80 GAVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHHhhCCC
Confidence 5677778777887
No 330
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.31 E-value=9.4 Score=36.32 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=61.1
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCC-eeEEe---------------ccCC------
Q 022515 129 EGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLAN-LKYVG---------------GDMF------ 184 (296)
Q Consensus 129 ~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~r-i~~~~---------------~D~~------ 184 (296)
.++.+|+=+|+|. |..++..++.. +.+++++|. ++..+.+++...+ +.+-. .++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 3578999999886 55556667766 568999999 8888888753222 21111 1110
Q ss_pred -CC-CCccceeEehhhhccCCchHHHHH-HHHHHHhcccCCCCcEEEEEee
Q 022515 185 -EA-ISPADAVLLKWILHDWNDEECVKI-LKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 185 -~~-~p~~D~v~~~~vlh~~~d~~~~~i-L~~~~~aL~p~~~gG~lli~e~ 232 (296)
.+ ..++|+++-.--. +...+..+ .+...+.++| ||.++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCC---CCEEEEEcc
Confidence 00 1358988875432 33222234 5899999999 898776643
No 331
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=75.91 E-value=2 Score=27.56 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=30.6
Q ss_pred cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
|.+.|.+. +.+|++|||+.+++++.-++|.|...-..|
T Consensus 5 Il~~l~~~-~~~s~~ela~~~~VS~~TiRRDl~~L~~~g 42 (57)
T PF08220_consen 5 ILELLKEK-GKVSVKELAEEFGVSEMTIRRDLNKLEKQG 42 (57)
T ss_pred HHHHHHHc-CCEEHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 55667664 789999999999999999999777665544
No 332
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=75.88 E-value=7.7 Score=35.20 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=66.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCC-CC--Cc-cceeEe--
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFE-AI--SP-ADAVLL-- 195 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~-~~--p~-~D~v~~-- 195 (296)
...+++|++|+.+.....+.+.|+-++--+++. .+.+..+.. .....++..+|++. +. .. ++++..
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 457999999999999999999998888777777 555544432 22334445555543 10 00 111100
Q ss_pred -----------------------hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCC
Q 022515 196 -----------------------KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG 239 (296)
Q Consensus 196 -----------------------~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~ 239 (296)
..+.-||++.. .++......++| +|.+++.+.+...+..
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~~--~~f~~~~~~~~~---~~~v~~~e~~~~~p~g 321 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLTRDTITHWQDKS--ALFRGRVATLKP---GGKVLILEYIRGLPEG 321 (364)
T ss_pred chhhhhcccccCCCccccccccchhheeeccccc--HHHHhHhhccCc---CceEEehhhcCcCCcC
Confidence 12233344333 567888888998 8999999988765544
No 333
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.21 E-value=12 Score=33.18 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=66.9
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEec-----cCCC----CCC--cccee
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGG-----DMFE----AIS--PADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~-----D~~~----~~p--~~D~v 193 (296)
++.+.+||=+|+|. |.++...++.+--.++++.|+ +.-++.|++ ..+-+..... ++.+ -.. .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 56788999999885 777777888888889999999 889999987 2222222222 1111 011 27777
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
+-...++ .-++.+..++++ ||.+++...-.+
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGAE 277 (354)
T ss_pred EEccCch--------HHHHHHHHHhcc---CCEEEEeccCCC
Confidence 7766554 446667788898 999888875443
No 334
>PHA00738 putative HTH transcription regulator
Probab=74.85 E-value=3.2 Score=30.40 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.|++.|.. ++++++.+|++.++++.+.+.++|.-.-..|
T Consensus 13 tRr~IL~lL~~-~e~~~V~eLae~l~lSQptVS~HLKvLreAG 54 (108)
T PHA00738 13 LRRKILELIAE-NYILSASLISHTLLLSYTTVLRHLKILNEQG 54 (108)
T ss_pred HHHHHHHHHHH-cCCccHHHHHHhhCCCHHHHHHHHHHHHHCC
Confidence 57788888986 2479999999999999999999987665443
No 335
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=74.78 E-value=2 Score=25.44 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHh
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTW 74 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~ 74 (296)
.+.++++||+.+|+++..+.|.+++.
T Consensus 7 ~~~~l~~iA~~~g~S~~~f~r~Fk~~ 32 (42)
T PF00165_consen 7 QKLTLEDIAEQAGFSPSYFSRLFKKE 32 (42)
T ss_dssp SS--HHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 47999999999999998887755443
No 336
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=74.72 E-value=2.1 Score=36.53 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=33.3
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|++.+.....|.|+.|||+++|++..-+.|.|......|
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lglpksT~~RlL~tL~~~G 52 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGLTRAAARRFLLTLVELG 52 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45677776544789999999999999999999887776654
No 337
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.72 E-value=7.8 Score=34.41 Aligned_cols=121 Identities=16% Similarity=0.215 Sum_probs=70.0
Q ss_pred EEEecCCchHHHHHHHHHCCCCeE-Eeccc-hhHhhccCC-CCCCeeEEeccCCC-C---CCccceeEehhhhccCC---
Q 022515 134 LVDVGGGIGTAAKAIAKAFPKLEC-TCFDL-PHVVNGLDS-DLANLKYVGGDMFE-A---ISPADAVLLKWILHDWN--- 203 (296)
Q Consensus 134 vLDvGgG~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~---~p~~D~v~~~~vlh~~~--- 203 (296)
|+|+=||.|.++..|.+. +.++ ..+|+ +..++.-+. ..+ .+..+|+.+ . .|+.|+++...-...|+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag 76 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN--KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAG 76 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC--CCCccChhhhhhhhCCCcCEEEecCCCcccchhc
Confidence 589999999999988776 4554 45787 666555443 222 344567765 2 45688887765554443
Q ss_pred ------chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515 204 ------DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF 277 (296)
Q Consensus 204 ------d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf 277 (296)
|+. -.++..+.+.++.. .-+++++|.+..-.. ........++...|++.||
T Consensus 77 ~~~~~~d~r-~~L~~~~~r~i~~~--~P~~~v~ENV~~l~~--------------------~~~~~~~~~i~~~l~~~GY 133 (315)
T TIGR00675 77 KRKGFEDTR-GTLFFEIVRILKEK--KPKFFLLENVKGLVS--------------------HDKGRTFKVIIETLEELGY 133 (315)
T ss_pred ccCCCCCch-hhHHHHHHHHHhhc--CCCEEEeeccHHHHh--------------------cccchHHHHHHHHHHhCCC
Confidence 222 23444444444221 126778886532100 0111245678888899999
Q ss_pred ceeE
Q 022515 278 SDYK 281 (296)
Q Consensus 278 ~~~~ 281 (296)
.+..
T Consensus 134 ~v~~ 137 (315)
T TIGR00675 134 KVYY 137 (315)
T ss_pred EEEE
Confidence 7643
No 338
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=74.43 E-value=6.5 Score=32.59 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=41.4
Q ss_pred CCEEEEecCCchHHH-HHHHHHCCCCeEEeccc---hhHhhccCCCCCCeeEEeccCCC-CCCccceeEeh
Q 022515 131 LNSLVDVGGGIGTAA-KAIAKAFPKLECTCFDL---PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLK 196 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~-~~l~~~~p~~~~~~~D~---~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~ 196 (296)
+.+||=||||.-... ...+..+ +.++++++. ++..+.+ ...+++++.+++.. .+.++|+|+..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~~~~~l~~l~--~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA-GAQLRVIAEELESELTLLA--EQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCCCCHHHHHHH--HcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 468999999976554 3333333 668888875 2222222 34589999998876 56678988874
No 339
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=74.13 E-value=5.5 Score=31.34 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=50.8
Q ss_pred EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------C------CCCeeEEeccCCCCCCccceeEehhhh
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------D------LANLKYVGGDMFEAISPADAVLLKWIL 199 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~------~~ri~~~~~D~~~~~p~~D~v~~~~vl 199 (296)
+|.=+|+|.+..+.+..-..-+.+++.... ++.++..++ . ..++.+ .-|+.+-..++|++++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiia--- 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIA--- 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE----
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEec---
Confidence 366689988877766544444578888887 555543322 1 123332 22332223468988874
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
.|......+++++...+++ +.+++.
T Consensus 77 --vPs~~~~~~~~~l~~~l~~----~~~ii~ 101 (157)
T PF01210_consen 77 --VPSQAHREVLEQLAPYLKK----GQIIIS 101 (157)
T ss_dssp --S-GGGHHHHHHHHTTTSHT----T-EEEE
T ss_pred --ccHHHHHHHHHHHhhccCC----CCEEEE
Confidence 3545566889999999986 554443
No 340
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=74.00 E-value=1.3 Score=28.99 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=29.2
Q ss_pred cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC
Q 022515 40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD 79 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~ 79 (296)
|.+.|.+..+|++..|||+.+|++....++.|....++|.
T Consensus 5 Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~ 44 (62)
T PF04703_consen 5 ILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKEGK 44 (62)
T ss_dssp HHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTS
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 4445544237999999999999999999888877777664
No 341
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=73.80 E-value=4.6 Score=27.99 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++.|.+|||+++++++..+++.+....+.|
T Consensus 24 ~~~s~~eiA~~~~i~~~~l~kil~~L~~~G 53 (83)
T PF02082_consen 24 KPVSSKEIAERLGISPSYLRKILQKLKKAG 53 (83)
T ss_dssp C-BEHHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHhhCC
Confidence 469999999999999999998777766543
No 342
>PRK11569 transcriptional repressor IclR; Provisional
Probab=73.08 E-value=2.3 Score=36.93 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=32.5
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|+++|.+.++++|+.|||+.+|++..-+.|.|......|
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lglpksTv~RlL~tL~~~G 71 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQG 71 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44666666544789999999999999999999887776544
No 343
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=72.98 E-value=3.4 Score=29.54 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=29.1
Q ss_pred HHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhh
Q 022515 34 CAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRC 69 (296)
Q Consensus 34 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~ 69 (296)
.+.+++|+..|-+ ++.|-.|||+.+|++...+.|
T Consensus 41 l~~R~~i~~~Ll~--~~~tQrEIa~~lGiS~atIsR 74 (94)
T TIGR01321 41 LGDRIRIVNELLN--GNMSQREIASKLGVSIATITR 74 (94)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHhCCChhhhhH
Confidence 4578999998865 789999999999999887766
No 344
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.81 E-value=5.8 Score=31.98 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=33.0
Q ss_pred ccceeEehhhhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 189 PADAVLLKWILHDWND----------EECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
..|+|++++.||++.. +...++++++..+|+| +.++|.-+..|-
T Consensus 50 ~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~----~allIW~tt~Pv 103 (183)
T cd01842 50 RLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI----ECLIVWNTAMPV 103 (183)
T ss_pred ceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC----ccEEEEecCCCC
Confidence 4799999999999864 3445777888888887 567777666553
No 345
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=72.63 E-value=29 Score=29.19 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=42.7
Q ss_pred CCCEEEEecCCchHHHHH--HHHHCCCCeEEec--cc-hhHhhccCCCCCCeeEEeccCCC-CCCccceeEeh
Q 022515 130 GLNSLVDVGGGIGTAAKA--IAKAFPKLECTCF--DL-PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLK 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~--l~~~~p~~~~~~~--D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~ 196 (296)
.+.+||=||||.-..-.. |++. +.+++++ ++ +++.+.+ ..++++++..+|.. +..++++|++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~--~~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLK--KYGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHH--hCCCEEEEeCCCChHHhCCCcEEEEC
Confidence 467999999999886632 3343 4555555 55 5554444 36779999888776 56678888874
No 346
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=72.61 E-value=37 Score=26.73 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=39.9
Q ss_pred CCCEEEEecCCchHHH--HHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCC-CCCccceeEeh
Q 022515 130 GLNSLVDVGGGIGTAA--KAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLK 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~--~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~ 196 (296)
.+++||=||||.=..- ..|++. +.++++++ |+..+... ..+.+++....+.+ ++.++|++++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~-~l~~i~~~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMK-ELPYITWKQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHH-hccCcEEEecccChhcCCCceEEEEC
Confidence 4678999999976553 234443 56777776 44443333 23466776666665 56678988884
No 347
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=72.56 E-value=2.5 Score=36.66 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=32.6
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|++.|+..+++.|+.|||+++|++...+.|.|......|
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lglpkStv~RlL~tL~~~G 68 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAAD 68 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44666776544679999999999999999999887776644
No 348
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.41 E-value=10 Score=34.96 Aligned_cols=104 Identities=22% Similarity=0.287 Sum_probs=68.4
Q ss_pred CCCEEEEec-CCchH------HHHHHHHHCCCCeEEeccc--hhHhhccCC--CCCCeeEEeccCCC-CC----------
Q 022515 130 GLNSLVDVG-GGIGT------AAKAIAKAFPKLECTCFDL--PHVVNGLDS--DLANLKYVGGDMFE-AI---------- 187 (296)
Q Consensus 130 ~~~~vLDvG-gG~G~------~~~~l~~~~p~~~~~~~D~--~~~~~~a~~--~~~ri~~~~~D~~~-~~---------- 187 (296)
++..|+=|| -|+|- ++..|.++....=.+..|. |..+++.+. ..-++.|..-+-.+ |.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 467788888 35443 3333444322333566786 888887766 33445554432222 32
Q ss_pred --CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 188 --SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 188 --p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
..+|++++--.=.+.-|++...-+++++++++| .-.|+|+|.....
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P---~E~llVvDam~GQ 226 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINP---DETLLVVDAMIGQ 226 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCC---CeEEEEEecccch
Confidence 137999997776666688888999999999999 7899999987654
No 349
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=71.62 E-value=3.7 Score=38.26 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=69.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC----------CCCccce
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE----------AISPADA 192 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~----------~~p~~D~ 192 (296)
.....+|-||-|.|.+...+...+|....+++.+ |++++.|.+ ..+|..++-.|-.+ ....||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 3456788888888999999999999999999999 999999987 23345544444322 1123888
Q ss_pred eEe----hhhhccC---Cch-HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515 193 VLL----KWILHDW---NDE-ECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237 (296)
Q Consensus 193 v~~----~~vlh~~---~d~-~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~ 237 (296)
++. .. -|.. +.. -+..+|..++.+|+| .|-+ ++..+.++.
T Consensus 374 l~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p---~g~f-~inlv~r~~ 421 (482)
T KOG2352|consen 374 LMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPP---RGMF-IINLVTRNS 421 (482)
T ss_pred EEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCc---cceE-EEEEecCCc
Confidence 876 22 3332 222 245789999999999 5655 555444443
No 350
>PHA01634 hypothetical protein
Probab=71.38 E-value=4.8 Score=30.59 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=30.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLD 170 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 170 (296)
...+|+|||++.|..++.++-+. ..+++.++. |...+..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~e 68 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWE 68 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHH
Confidence 46899999999999999998874 236777887 66655544
No 351
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=71.26 E-value=2.4 Score=28.21 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=30.6
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.++..|.+ ++.+..+||+.+|++.+.+.+++...-..|
T Consensus 3 ~~il~~L~~--~~~~~~eLa~~l~vS~~tv~~~l~~L~~~g 41 (69)
T TIGR00122 3 LRLLALLAD--NPFSGEKLGEALGMSRTAVNKHIQTLREWG 41 (69)
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 456677776 689999999999999999988776654433
No 352
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=70.81 E-value=3.9 Score=25.01 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=28.1
Q ss_pred chhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 41 PDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 41 f~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++.|.+. ++.++.+||+.+++++..+.+.+..+...+
T Consensus 6 l~~l~~~-~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g 42 (53)
T smart00420 6 LELLAQQ-GKVSVEELAELLGVSEMTIRRDLNKLEEQG 42 (53)
T ss_pred HHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4444443 679999999999999999888777765543
No 353
>PTZ00357 methyltransferase; Provisional
Probab=70.69 E-value=11 Score=36.97 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=56.1
Q ss_pred CEEEEecCCchHHHHHHHHHCC----CCeEEeccc-hhHhhc--cC-----CC-------CCCeeEEeccCCC-CCC---
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFP----KLECTCFDL-PHVVNG--LD-----SD-------LANLKYVGGDMFE-AIS--- 188 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~--a~-----~~-------~~ri~~~~~D~~~-~~p--- 188 (296)
..|+=||+|-|-+....++... .++++.++- |..+.. -+ .. .++|+++..|+.+ ..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 4689999999999887777543 356777776 552211 11 13 5679999999987 322
Q ss_pred ----------ccceeEehhhhccCCchH-HHHHHHHHHHhccc
Q 022515 189 ----------PADAVLLKWILHDWNDEE-CVKILKKCKEAITS 220 (296)
Q Consensus 189 ----------~~D~v~~~~vlh~~~d~~-~~~iL~~~~~aL~p 220 (296)
.+|++++ -.|--|.|.+ ..+-|..+.+.||+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhh
Confidence 3788776 3344455443 23556666666653
No 354
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=70.33 E-value=3.1 Score=32.37 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=35.9
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.+..|.+.|..+ ++.|..+||+++|+++..+.+++..+...|
T Consensus 9 ~D~~IL~~L~~d-~r~~~~eia~~lglS~~~v~~Ri~~L~~~G 50 (154)
T COG1522 9 IDRRILRLLQED-ARISNAELAERVGLSPSTVLRRIKRLEEEG 50 (154)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 456678888874 789999999999999999999888888776
No 355
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=70.17 E-value=3 Score=35.62 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=32.3
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|+++|+..+.++++.|||+++|++...+.|.|......|
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G 47 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELG 47 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCC
Confidence 45677787633446799999999999999999888776644
No 356
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=69.31 E-value=6.6 Score=28.75 Aligned_cols=81 Identities=23% Similarity=0.342 Sum_probs=47.1
Q ss_pred CCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC--C-----CccceeEehhhhccCCchHHH
Q 022515 139 GGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA--I-----SPADAVLLKWILHDWNDEECV 208 (296)
Q Consensus 139 gG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~--~-----p~~D~v~~~~vlh~~~d~~~~ 208 (296)
||.|.++..+++.. .+.+++++|. ++.++.+++ ..+.++.||..++ + .++|.+++..- +|+...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE--EGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--cccccccccchhhhHHhhcCccccCEEEEccC----CHHHHH
Confidence 34456666665533 3457999999 888877762 2388999999883 1 24777766421 344444
Q ss_pred HHHHHHHHhcccCCCCcEEEE
Q 022515 209 KILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 209 ~iL~~~~~aL~p~~~gG~lli 229 (296)
.+...+ +.+.| ..++++
T Consensus 78 ~~~~~~-r~~~~---~~~ii~ 94 (116)
T PF02254_consen 78 LIALLA-RELNP---DIRIIA 94 (116)
T ss_dssp HHHHHH-HHHTT---TSEEEE
T ss_pred HHHHHH-HHHCC---CCeEEE
Confidence 444444 44455 455543
No 357
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=69.30 E-value=44 Score=29.89 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=53.5
Q ss_pred CCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc----hhHhhccCC-CCCCeeEEeccCC--CCCCccceeEehhhhc
Q 022515 129 EGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL----PHVVNGLDS-DLANLKYVGGDMF--EAISPADAVLLKWILH 200 (296)
Q Consensus 129 ~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~----~~~~~~a~~-~~~ri~~~~~D~~--~~~p~~D~v~~~~vlh 200 (296)
..+.+||=+|+| .|.++..+++.. +.++++++. ++-.+.+++ ..+.+.....|.. ....++|+++-.-
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~--- 246 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEAT--- 246 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECc---
Confidence 356688888865 467777788776 568888774 344444443 1221111111111 0112478776532
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
..+ ..+....+.|++ ||+++++....
T Consensus 247 --g~~---~~~~~~~~~l~~---~G~~v~~G~~~ 272 (355)
T cd08230 247 --GVP---PLAFEALPALAP---NGVVILFGVPG 272 (355)
T ss_pred --CCH---HHHHHHHHHccC---CcEEEEEecCC
Confidence 111 357778888999 99998876543
No 358
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=68.90 E-value=19 Score=31.67 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=55.1
Q ss_pred cCCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCC----C--CCCccceeEehhh
Q 022515 128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMF----E--AISPADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~----~--~~p~~D~v~~~~v 198 (296)
+..+.+||..|+| .|..+..+++.. +.++++.+. +...+.+++ ..+.+-....+.. . ....+|+++-..
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~- 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV- 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC-
Confidence 4566788888865 588888888876 577888876 666655543 1111100000011 0 112478776431
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.. ...++.+.+.|++ +|+++....
T Consensus 241 ----g~---~~~~~~~~~~l~~---~G~~v~~g~ 264 (338)
T cd08254 241 ----GT---QPTFEDAQKAVKP---GGRIVVVGL 264 (338)
T ss_pred ----CC---HHHHHHHHHHhhc---CCEEEEECC
Confidence 11 1357788899999 899887753
No 359
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=68.67 E-value=6.9 Score=31.65 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=33.1
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
..|+++|..+ |++|.++||+.+|++...+++.|......+
T Consensus 25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi~~~~VRk~L~~L~e~g 64 (178)
T PRK06266 25 FEVLKALIKK-GEVTDEEIAEQTGIKLNTVRKILYKLYDAR 64 (178)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 3478888764 799999999999999999999887776554
No 360
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=68.66 E-value=9.9 Score=32.74 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=60.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCCC---ccceeEehhhhccCCc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAIS---PADAVLLKWILHDWND 204 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~p---~~D~v~~~~vlh~~~d 204 (296)
+.++..-+|+|.-.|.++-.|.++ ++.++.+|-..|.+..- ..++|+....|-|+-.| +.|-.++..|=
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~-dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE----- 280 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLM-DTGQVTHLREDGFKFRPTRSNIDWMVCDMVE----- 280 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhh-cccceeeeeccCcccccCCCCCceEEeehhc-----
Confidence 568899999999999999999998 89999999866665554 67889999999888322 36666664432
Q ss_pred hHHHHHHHHHHHhccc
Q 022515 205 EECVKILKKCKEAITS 220 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p 220 (296)
+-.++-..+...|..
T Consensus 281 -kP~rv~~li~~Wl~n 295 (358)
T COG2933 281 -KPARVAALIAKWLVN 295 (358)
T ss_pred -CcHHHHHHHHHHHHc
Confidence 122444445555654
No 361
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=68.35 E-value=1.5 Score=26.57 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=18.5
Q ss_pred chhcccCCCCCCHHHHHHHcCCCCcchhhhHH
Q 022515 41 PDIISKHGKPMTLNELVSALTINPSKSRCQLR 72 (296)
Q Consensus 41 f~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~ 72 (296)
..++.+ | .|+.+||+.+|++..-+.|.+.
T Consensus 15 ~~l~~~--G-~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 15 KELYAE--G-MSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp HHHHHT--T---HHHHHHHTTS-HHHHHHHHC
T ss_pred HHHHHC--C-CCHHHHHHHHCcCHHHHHHHHh
Confidence 344543 4 9999999999998877666443
No 362
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=67.25 E-value=6.2 Score=24.99 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=28.9
Q ss_pred cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
|+..|.. ++.|..+|++.++++...+.+.+......+
T Consensus 2 il~~l~~--~~~~~~~i~~~l~is~~~v~~~l~~L~~~g 38 (66)
T smart00418 2 ILKLLAE--GELCVCELAEILGLSQSTVSHHLKKLREAG 38 (66)
T ss_pred HHHHhhc--CCccHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 3444543 689999999999999999888887776654
No 363
>PRK01381 Trp operon repressor; Provisional
Probab=67.12 E-value=5.5 Score=28.74 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=29.3
Q ss_pred HHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhh
Q 022515 34 CAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRC 69 (296)
Q Consensus 34 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~ 69 (296)
.+.+++|+..|.. |..|--|||+.+|++...+.|
T Consensus 41 l~~R~~I~~~L~~--g~~sQREIa~~lGvSiaTITR 74 (99)
T PRK01381 41 LGTRVRIVEELLR--GELSQREIKQELGVGIATITR 74 (99)
T ss_pred HHHHHHHHHHHHc--CCcCHHHHHHHhCCceeeehh
Confidence 3578999999886 789999999999999877766
No 364
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=66.92 E-value=1.4 Score=30.54 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=32.8
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++++|...|... +.+++.+|.+.+|++...+.++|...-..|
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~G 42 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGLTDGNLSKHLKKLEEAG 42 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT--HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCcCHHHHHHHHHHHHHCC
Confidence 467777778753 689999999999999999999998776654
No 365
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=66.68 E-value=32 Score=30.67 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=54.4
Q ss_pred CCCCEEEEecCC-chHHHHHHHHH-CCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCch
Q 022515 129 EGLNSLVDVGGG-IGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDE 205 (296)
Q Consensus 129 ~~~~~vLDvGgG-~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~ 205 (296)
.++.+||=+|+| .|.++..++++ ....+++++|. ++-.+.+++ .+.. ....+.. ...++|+|+=.- ...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~-~~~~~~~-~~~g~d~viD~~-----G~~ 233 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADET-YLIDDIP-EDLAVDHAFECV-----GGR 233 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCce-eehhhhh-hccCCcEEEECC-----CCC
Confidence 456789989854 45566677775 55668888887 665665552 2211 1111111 111477776421 110
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 206 ECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 206 ~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.....+....+.+++ ||+++++-.
T Consensus 234 ~~~~~~~~~~~~l~~---~G~iv~~G~ 257 (341)
T cd08237 234 GSQSAINQIIDYIRP---QGTIGLMGV 257 (341)
T ss_pred ccHHHHHHHHHhCcC---CcEEEEEee
Confidence 012457788889999 999988764
No 366
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=66.41 E-value=31 Score=30.21 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=51.8
Q ss_pred CCCEEEEec-CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCC-CccceeEehhhhccCCchH
Q 022515 130 GLNSLVDVG-GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAI-SPADAVLLKWILHDWNDEE 206 (296)
Q Consensus 130 ~~~~vLDvG-gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~-p~~D~v~~~~vlh~~~d~~ 206 (296)
...++|=+| ||.|.++..+++.+....++++|. +.-++.+.+ . .+ -|..+.. .++|+|+=.- ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~-~---~~--i~~~~~~~~g~Dvvid~~-----G~-- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG-Y---EV--LDPEKDPRRDYRAIYDAS-----GD-- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh-c---cc--cChhhccCCCCCEEEECC-----CC--
Confidence 345677778 556788888888874334666776 555555542 1 11 1111111 2478776532 11
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 207 CVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 207 ~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
...+..+.+.+++ +|+++++-.
T Consensus 211 -~~~~~~~~~~l~~---~G~iv~~G~ 232 (308)
T TIGR01202 211 -PSLIDTLVRRLAK---GGEIVLAGF 232 (308)
T ss_pred -HHHHHHHHHhhhc---CcEEEEEee
Confidence 1356778888999 999998764
No 367
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=66.39 E-value=36 Score=30.16 Aligned_cols=90 Identities=16% Similarity=0.091 Sum_probs=55.7
Q ss_pred cCCCCEEEEec-CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCCC-CCccceeEehhhhccCC
Q 022515 128 FEGLNSLVDVG-GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFEA-ISPADAVLLKWILHDWN 203 (296)
Q Consensus 128 ~~~~~~vLDvG-gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~~-~p~~D~v~~~~vlh~~~ 203 (296)
..++.+||=.| |+.|.++..+++.. +.++++.+. ++-.+.+++ ..+.+ + |..+. ...+|+++.....
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~v--i--~~~~~~~~~~d~~i~~~~~---- 233 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAASA--G--GAYDTPPEPLDAAILFAPA---- 233 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCcee--c--cccccCcccceEEEECCCc----
Confidence 56678899888 45667777788876 567887776 666666664 22211 1 11111 1246766543211
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 204 DEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 204 d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
...+....+++++ ||+++++-..
T Consensus 234 ----~~~~~~~~~~l~~---~G~~v~~G~~ 256 (329)
T TIGR02822 234 ----GGLVPPALEALDR---GGVLAVAGIH 256 (329)
T ss_pred ----HHHHHHHHHhhCC---CcEEEEEecc
Confidence 1357788889999 9999887653
No 368
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=66.35 E-value=2.4 Score=27.24 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=28.9
Q ss_pred cCcchhcccCCCC-CCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKP-MTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~-~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.++-.|...+++ +|+.|||+.+++++..+.+.+......|
T Consensus 8 ~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~G 49 (62)
T PF12802_consen 8 FRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKG 49 (62)
T ss_dssp HHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3445555553222 8999999999999999988777766544
No 369
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=66.20 E-value=6.3 Score=23.58 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
-+.|..+||+.+|++...+.+.+..+.+.|
T Consensus 7 ~~~s~~~la~~l~~s~~tv~~~l~~L~~~g 36 (48)
T smart00419 7 LPLTRQEIAELLGLTRETVSRTLKRLEKEG 36 (48)
T ss_pred eccCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 478999999999999999988887776654
No 370
>PRK08507 prephenate dehydrogenase; Validated
Probab=65.65 E-value=20 Score=30.92 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=45.8
Q ss_pred EEEEecCCc--hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHH
Q 022515 133 SLVDVGGGI--GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVK 209 (296)
Q Consensus 133 ~vLDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~ 209 (296)
+|.=||+|. +.++..|.+.....+++++|. ++.++.+.+ .+-+.. ..+.. +...+|+|++. .|+....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~-~g~~~~-~~~~~-~~~~aD~Vila-----vp~~~~~~ 73 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE-LGLVDE-IVSFE-ELKKCDVIFLA-----IPVDAIIE 73 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH-CCCCcc-cCCHH-HHhcCCEEEEe-----CcHHHHHH
Confidence 466677765 445555555433357888898 666665542 111111 11211 12248988884 36667778
Q ss_pred HHHHHHHhccc
Q 022515 210 ILKKCKEAITS 220 (296)
Q Consensus 210 iL~~~~~aL~p 220 (296)
+++.+.. +++
T Consensus 74 ~~~~l~~-l~~ 83 (275)
T PRK08507 74 ILPKLLD-IKE 83 (275)
T ss_pred HHHHHhc-cCC
Confidence 8888888 877
No 371
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=65.29 E-value=7.3 Score=32.14 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=30.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLD 170 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 170 (296)
.++..|||-=||+|..+.+..+. +-+++++|+ ++-++.|+
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence 45789999999999999887776 568999999 88777664
No 372
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=65.00 E-value=19 Score=23.22 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++|..+||+.+|++...+.+.+..+...|
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g 53 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEG 53 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 689999999999999999988887776554
No 373
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=64.92 E-value=1e+02 Score=28.48 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=52.4
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCC------------------CCCeeEEeccCCCCCCccce
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD------------------LANLKYVGGDMFEAISPADA 192 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~ri~~~~~D~~~~~p~~D~ 192 (296)
.+|.=||.|.-....+.+-...+.+++++|. ++.++..... .+++.+. .+...+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~-----~~~~~aDv 78 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT-----TTPEPADA 78 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee-----cccccCCE
Confidence 4677788875544443332223578999998 7766653210 1111111 11225788
Q ss_pred eEehhhhc-----cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 193 VLLKWILH-----DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 193 v~~~~vlh-----~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
|++.---- ..+-......++.+.+.+++ |.++|.+...+.
T Consensus 79 vii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~----g~iVI~~STv~p 123 (415)
T PRK11064 79 FLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK----GDLVILESTSPV 123 (415)
T ss_pred EEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCC----CCEEEEeCCCCC
Confidence 87632110 00013455677888888987 777777765543
No 374
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=64.84 E-value=21 Score=29.66 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHcCcchhcccCCC--CCCHHHHHHHcCCCCcchhhhHHHh
Q 022515 34 CAIQLGIPDIISKHGK--PMTLNELVSALTINPSKSRCQLRTW 74 (296)
Q Consensus 34 ~a~~l~lf~~L~~~~~--~~t~~eLA~~~~~~~~~l~~~l~~~ 74 (296)
.-....+.+.|.+. + .+|+.|||+.+|+++.-++|.|...
T Consensus 15 ~~~~~~il~~l~~~-~~~~vs~~~L~~~~~v~~~tirrDl~~l 56 (213)
T PRK05472 15 LPLYYRYLKELKEE-GVERVSSKELAEALGVDSAQIRKDLSYF 56 (213)
T ss_pred hHHHHHHHHHHHHc-CCcEEeHHHHHHHhCcCHHHHHHHHHHH
Confidence 33445566777663 5 7899999999999998777766544
No 375
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=64.67 E-value=33 Score=31.43 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=53.0
Q ss_pred CEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCCC------CCccceeEehhhhccC
Q 022515 132 NSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFEA------ISPADAVLLKWILHDW 202 (296)
Q Consensus 132 ~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~~------~p~~D~v~~~~vlh~~ 202 (296)
.+||=|||| .|....+.+.+..+.++++.|. ++-+..+.. ...+++...-|..+. +.++|+|+..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~----- 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA----- 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC-----
Confidence 468889974 4556666656665689999999 788877764 355899999998872 23578887642
Q ss_pred CchHHHHHHHHHH
Q 022515 203 NDEECVKILKKCK 215 (296)
Q Consensus 203 ~d~~~~~iL~~~~ 215 (296)
|......+++.+.
T Consensus 77 p~~~~~~i~ka~i 89 (389)
T COG1748 77 PPFVDLTILKACI 89 (389)
T ss_pred CchhhHHHHHHHH
Confidence 3223335555553
No 376
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=64.65 E-value=46 Score=27.37 Aligned_cols=103 Identities=12% Similarity=0.167 Sum_probs=67.6
Q ss_pred CCCEEEEecCCchHHHHHHHH---HC-CCCeEEeccch-hHh-hccCCCCCCeeEEeccCCCC-C-------C-cc-cee
Q 022515 130 GLNSLVDVGGGIGTAAKAIAK---AF-PKLECTCFDLP-HVV-NGLDSDLANLKYVGGDMFEA-I-------S-PA-DAV 193 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~---~~-p~~~~~~~D~~-~~~-~~a~~~~~ri~~~~~D~~~~-~-------p-~~-D~v 193 (296)
.+..|.++|.-.|..++-++. .. ...+++++|+. ... ..|+ ...+|.|+.|+-.++ . . .| -+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~-e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR-EVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh-cCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 457899999777766655544 22 23678888762 222 3333 578899999987763 1 1 12 445
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCC
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKK 238 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~ 238 (296)
++-..-|+ -+.....|+-..+.|.. |..+++.|...++-.
T Consensus 148 vilDsdHs--~~hvLAel~~~~pllsa---G~Y~vVeDs~v~dlp 187 (237)
T COG3510 148 VILDSDHS--MEHVLAELKLLAPLLSA---GDYLVVEDSNVNDLP 187 (237)
T ss_pred EEecCCch--HHHHHHHHHHhhhHhhc---CceEEEecccccCCC
Confidence 55555553 34456778888888988 888888888777654
No 377
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=64.45 E-value=18 Score=31.57 Aligned_cols=83 Identities=20% Similarity=0.110 Sum_probs=52.5
Q ss_pred CEEEEecCC--chHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccC-CCCCCccceeEehhhhccCCchHH
Q 022515 132 NSLVDVGGG--IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDM-FEAISPADAVLLKWILHDWNDEEC 207 (296)
Q Consensus 132 ~~vLDvGgG--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~-~~~~p~~D~v~~~~vlh~~~d~~~ 207 (296)
.+|+=+|.| -|.++..+.++.+...+++.|. ...++.+.. .+=+.-...+. ......+|+|+++- |-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~-lgv~d~~~~~~~~~~~~~aD~Vivav-----Pi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE-LGVIDELTVAGLAEAAAEADLVIVAV-----PIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh-cCcccccccchhhhhcccCCEEEEec-----cHHHH
Confidence 356666655 3566666677767777899998 666766652 11111111222 22444689999864 55667
Q ss_pred HHHHHHHHHhccc
Q 022515 208 VKILKKCKEAITS 220 (296)
Q Consensus 208 ~~iL~~~~~aL~p 220 (296)
.++++++...|++
T Consensus 78 ~~~l~~l~~~l~~ 90 (279)
T COG0287 78 EEVLKELAPHLKK 90 (279)
T ss_pred HHHHHHhcccCCC
Confidence 7899999988888
No 378
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=64.40 E-value=23 Score=31.55 Aligned_cols=95 Identities=20% Similarity=0.278 Sum_probs=62.0
Q ss_pred cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccchhHhhccCC-C-CCCeeEEeccCCCCC-----C-ccceeEehh
Q 022515 128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-D-LANLKYVGGDMFEAI-----S-PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~-~~ri~~~~~D~~~~~-----p-~~D~v~~~~ 197 (296)
++++.+||=.| ||.|.+++.|+++.-...++....++-.+.+++ . ..-|++...|+.+.. + ++|+|+-.-
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 66788999998 688899999999985433333333444445544 2 223445556654421 2 489888632
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
. ...+.+..++|++ +|+++.+-...
T Consensus 220 -----G----~~~~~~~l~~l~~---~G~lv~ig~~~ 244 (326)
T COG0604 220 -----G----GDTFAASLAALAP---GGRLVSIGALS 244 (326)
T ss_pred -----C----HHHHHHHHHHhcc---CCEEEEEecCC
Confidence 1 2457778888999 89999888765
No 379
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=64.29 E-value=10 Score=30.28 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=31.5
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhc
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQN 77 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~ 77 (296)
.+|++.+.+. | -.. ++++|+++||+++++++..+.+-|....+.
T Consensus 9 yAl~~l~~lA-~--~~~-~~~vs~~eIA~~~~ip~~~l~kIl~~L~~a 52 (164)
T PRK10857 9 YAVTAMLDVA-L--NSE-AGPVPLADISERQGISLSYLEQLFSRLRKN 52 (164)
T ss_pred HHHHHHHHHH-h--CCC-CCcCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4555555555 1 121 268999999999999999998877665543
No 380
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=64.00 E-value=7.1 Score=33.85 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=28.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVV 166 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~ 166 (296)
-.+.+|||+|||+|--.+...... ..++..+|. .+++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhhe
Confidence 456899999999999888777664 266777777 5565
No 381
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=63.79 E-value=4.9 Score=34.64 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=32.1
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|++.|.+.++++|+.|||+.+|++..-+.|.|..+...|
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl~kstv~RlL~tL~~~g 54 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGLHRTTVRRLLETLQEEG 54 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45666776544579999999999999999999887766543
No 382
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=63.72 E-value=5 Score=37.09 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=42.5
Q ss_pred EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCC-c--cceeEehhhhccCCchH
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AIS-P--ADAVLLKWILHDWNDEE 206 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p-~--~D~v~~~~vlh~~~d~~ 206 (296)
.|+=||+|...+..++.....+.+++++|. +.+-..... ...|+++...+... .+- . -+--++..+++.|+.++
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 378899999988888877777899999997 555433321 35788887632221 110 1 12223445555555555
Q ss_pred HHHHHHHH
Q 022515 207 CVKILKKC 214 (296)
Q Consensus 207 ~~~iL~~~ 214 (296)
..+++.+.
T Consensus 82 ~~~ff~~~ 89 (409)
T PF03486_consen 82 LIAFFEEL 89 (409)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 55555543
No 383
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.62 E-value=83 Score=25.90 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=31.8
Q ss_pred CCEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE 185 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~ 185 (296)
..+|+-.|++ |.....+++.+ .+.++++.+. ++-.+...+ ...++.++..|+.+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC
Confidence 3577777753 44444444432 3678888887 543333211 23468888999886
No 384
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.32 E-value=6.6 Score=29.58 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=39.7
Q ss_pred HHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC
Q 022515 33 KCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD 79 (296)
Q Consensus 33 ~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~ 79 (296)
+..+...|.+++.++ |.+|..+++..+|++-.-+.+++.+.+..|.
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGasR~Tvk~~lreLVa~G~ 55 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGASRNTVKRYLRELVARGD 55 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 445667788888875 8999999999999999999999999998874
No 385
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=62.75 E-value=5.2 Score=34.29 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=30.7
Q ss_pred CcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 39 GIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 39 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.|++.|... +++|+.|||+++|++..-+.|.|......|
T Consensus 18 ~IL~~l~~~-~~l~l~eia~~lgl~kstv~Rll~tL~~~G 56 (257)
T PRK15090 18 GILQALGEE-REIGITELSQRVMMSKSTVYRFLQTMKTLG 56 (257)
T ss_pred HHHHHhhcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 455566553 589999999999999999999887766544
No 386
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=62.72 E-value=7.6 Score=29.49 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
..+.+=-.+.|...|++. +|.|+.|||+..|-+...+.|.|+.....|
T Consensus 59 a~vLsp~nleLl~~Ia~~-~P~Si~ElAe~vgRdv~nvhr~Ls~l~~~G 106 (144)
T COG4190 59 ARVLSPRNLELLELIAQE-EPASINELAELVGRDVKNVHRTLSTLADLG 106 (144)
T ss_pred HHHhChhHHHHHHHHHhc-CcccHHHHHHHhCcchHHHHHHHHHHHhcC
Confidence 334444567788889874 799999999999999999999887766554
No 387
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=62.05 E-value=7 Score=27.53 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=32.6
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++.++..|... ++.|..+||+.+++++..+.+.+......|
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~s~~~i~~~l~~L~~~g 52 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGVSPSTVTRVLDRLEKKG 52 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCchhHHHHHHHHHHCC
Confidence 45566777653 579999999999999999998887776654
No 388
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=61.91 E-value=2.2 Score=27.19 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=27.9
Q ss_pred cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+...|.+. ++.+..+||+.+++++..+.+.+....+.|
T Consensus 8 iL~~l~~~-~~~~~~~la~~~~~~~~~~t~~i~~L~~~g 45 (59)
T PF01047_consen 8 ILRILYEN-GGITQSELAEKLGISRSTVTRIIKRLEKKG 45 (59)
T ss_dssp HHHHHHHH-SSEEHHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHc-CCCCHHHHHHHHCCChhHHHHHHHHHHHCC
Confidence 34445443 679999999999999999988777666544
No 389
>PRK06474 hypothetical protein; Provisional
Probab=61.79 E-value=6.9 Score=31.64 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCcchhcccCCCCCCHHHHHHHc-CCCCcchhhhHHHhhhcC
Q 022515 29 SMTLKCAIQLGIPDIISKHGKPMTLNELVSAL-TINPSKSRCQLRTWFQND 78 (296)
Q Consensus 29 ~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~-~~~~~~l~~~l~~~~~~~ 78 (296)
..+|.--.++.|++.|...+++.|+.+|++.+ +++..-+.|+|..+...|
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~is~aTvYrhL~~L~e~G 55 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDVPQATLYRHLQTMVDSG 55 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 45666678888999997643459999999999 678788888888877655
No 390
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=61.06 E-value=14 Score=32.39 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=48.0
Q ss_pred CCCeeEEeccCCCCCC------c-cceeEehh-hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchh
Q 022515 173 LANLKYVGGDMFEAIS------P-ADAVLLKW-ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSI 244 (296)
Q Consensus 173 ~~ri~~~~~D~~~~~p------~-~D~v~~~~-vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~ 244 (296)
.-+|.|++.|....++ + ||++++++ ..|.+.++ +.++++| +.++|+|...-
T Consensus 199 ~vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~----~A~LvvEtaKf--------- 257 (289)
T PF14740_consen 199 NVKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAP----DAVLVVETAKF--------- 257 (289)
T ss_pred CcEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCC----CCEEEEEcchh---------
Confidence 5678889888776432 2 89887755 55655553 5556898 56777776311
Q ss_pred hhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515 245 ETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK 281 (296)
Q Consensus 245 ~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 281 (296)
+.++..- ...--.+.+.+++++|||+.+.
T Consensus 258 ----mvdLrKE----q~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 258 ----MVDLRKE----QLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred ----heeCCHH----HHHHHHHHHHHHHHHCCCcccc
Confidence 1111000 0000246788999999998654
No 391
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=60.67 E-value=10 Score=35.45 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=53.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEE------eccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECT------CFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDW 202 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~------~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~ 202 (296)
.+.+|+=||||+=..+.++--+-.+++++ ++|. +..-+.|. .+.+ ...+..+..+.+|+|++. .
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~--~dGF--~v~~~~Ea~~~ADvVviL-----l 105 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT--ENGF--KVGTYEELIPQADLVINL-----T 105 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH--hcCC--ccCCHHHHHHhCCEEEEc-----C
Confidence 45899999998755544443333344444 2222 22222322 1222 223333335679999883 4
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
||.....+.+++...||| |..|.+...
T Consensus 106 PDt~q~~v~~~i~p~LK~---Ga~L~fsHG 132 (487)
T PRK05225 106 PDKQHSDVVRAVQPLMKQ---GAALGYSHG 132 (487)
T ss_pred ChHHHHHHHHHHHhhCCC---CCEEEecCC
Confidence 776666778999999999 777776653
No 392
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=60.13 E-value=31 Score=30.68 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=53.4
Q ss_pred CCCEEEEecC-CchHHHHHHHHHCCCC-eEEeccc-hhHhhccCCC-CCCe-eEEeccCCC---CCCccceeEehhhhcc
Q 022515 130 GLNSLVDVGG-GIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSD-LANL-KYVGGDMFE---AISPADAVLLKWILHD 201 (296)
Q Consensus 130 ~~~~vLDvGg-G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~ri-~~~~~D~~~---~~p~~D~v~~~~vlh~ 201 (296)
++.+||=+|+ +.|.++..+++.. +. +++++|. ++-.+.+++. .+.+ .....|+.+ ..+++|+++-..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~---- 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS---- 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC----
Confidence 4567887775 3566777777776 44 6788887 7777766642 2211 111112111 112378776532
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
..+ ..+..+.+++++ ||+++++..
T Consensus 244 -G~~---~~~~~~~~~l~~---~G~iv~~G~ 267 (343)
T PRK09880 244 -GHP---SSINTCLEVTRA---KGVMVQVGM 267 (343)
T ss_pred -CCH---HHHHHHHHHhhc---CCEEEEEcc
Confidence 211 346677888999 999998864
No 393
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=59.63 E-value=35 Score=28.56 Aligned_cols=93 Identities=17% Similarity=0.182 Sum_probs=54.8
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCC-CC-eeEEeccCCC-----CCCccceeEehhhh
Q 022515 129 EGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDL-AN-LKYVGGDMFE-----AISPADAVLLKWIL 199 (296)
Q Consensus 129 ~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~r-i~~~~~D~~~-----~~p~~D~v~~~~vl 199 (296)
.++.+||.+|+|+ |..+..+++.. +.++++.+. ++..+.+++.. .. +.....+..+ ...++|+++...
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~-- 209 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAV-- 209 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECC--
Confidence 5678999999885 77777788776 478888887 55555443211 10 1111111110 112488887532
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
... ..+..+.+.|++ +|+++.+...
T Consensus 210 ---~~~---~~~~~~~~~l~~---~G~~v~~~~~ 234 (271)
T cd05188 210 ---GGP---ETLAQALRLLRP---GGRIVVVGGT 234 (271)
T ss_pred ---CCH---HHHHHHHHhccc---CCEEEEEccC
Confidence 221 346667778888 8998877654
No 394
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=59.10 E-value=86 Score=24.63 Aligned_cols=133 Identities=22% Similarity=0.235 Sum_probs=69.1
Q ss_pred ecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC------CCccceeEehhhhccCCchHH
Q 022515 137 VGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA------ISPADAVLLKWILHDWNDEEC 207 (296)
Q Consensus 137 vGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~------~p~~D~v~~~~vlh~~~d~~~ 207 (296)
|=||+|..+..+++.. .+.+++++-. ++-.+. ..+++++.+|+.++ +.++|.++..-.-. ..+
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~-~~~--- 74 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP-PKD--- 74 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST-TTH---
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----ccccccceeeehhhhhhhhhhhhcchhhhhhhhh-ccc---
Confidence 3466777776666533 2367777766 543333 57899999999983 23588887755321 222
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 208 VKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 208 ~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
....+++.++++.++ -.+++++....-.......... .... .+....+...+.++.+++.|+...-++|.
T Consensus 75 ~~~~~~~~~a~~~~~-~~~~v~~s~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~e~~~~~~~~~~~ivrp~ 144 (183)
T PF13460_consen 75 VDAAKNIIEAAKKAG-VKRVVYLSSAGVYRDPPGLFSD----EDKP---IFPEYARDKREAEEALRESGLNWTIVRPG 144 (183)
T ss_dssp HHHHHHHHHHHHHTT-SSEEEEEEETTGTTTCTSEEEG----GTCG---GGHHHHHHHHHHHHHHHHSTSEEEEEEES
T ss_pred ccccccccccccccc-cccceeeeccccCCCCCccccc----cccc---chhhhHHHHHHHHHHHHhcCCCEEEEECc
Confidence 345556666665420 1355555443322221110000 0000 00111224456677888889876666553
No 395
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=59.05 E-value=4 Score=38.15 Aligned_cols=95 Identities=15% Similarity=0.079 Sum_probs=67.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCC------CCCCeeEEeccCCC---CCC----cccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE---AIS----PADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~---~~p----~~D~v 193 (296)
.++.+|||.=|++|.-++..++..|++ +++..|+ +..++..++ ..+.++....|... .-+ .||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 356789999999999999999999997 5788888 777775544 34555555556443 111 26766
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
=+ =|-.-...+|..+.++++. ||.|+++-+
T Consensus 188 DL------DPyGs~s~FLDsAvqav~~---gGLL~vT~T 217 (525)
T KOG1253|consen 188 DL------DPYGSPSPFLDSAVQAVRD---GGLLCVTCT 217 (525)
T ss_pred ec------CCCCCccHHHHHHHHHhhc---CCEEEEEec
Confidence 44 2333445789999999998 888887764
No 396
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=58.75 E-value=24 Score=35.25 Aligned_cols=150 Identities=11% Similarity=0.096 Sum_probs=82.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------------------CCCCeeEEeccCCCC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------------------DLANLKYVGGDMFEA 186 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~~ri~~~~~D~~~~ 186 (296)
+..+|.=||+|+=...++..-...+.+++++|. ++.++.+.+ ...||++. .|+ +.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 389 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-AG 389 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HH
Confidence 346899999998444444444445899999999 777765432 12456554 233 33
Q ss_pred CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee-eeCCCCCCCchhhhhhhhhhhhhh--------h
Q 022515 187 ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM-IRENKKGDDKSIETQLFFDMLMMV--------L 257 (296)
Q Consensus 187 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~-~~~~~~~~~~~~~~~~~~~~~~~~--------~ 257 (296)
..++|+|+=. +..++.-. .++++++-+.++| ..|+...+ ..+-..-............++.+. .
T Consensus 390 ~~~aDlViEa-v~E~l~~K--~~vf~~l~~~~~~----~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVE 462 (715)
T PRK11730 390 FERVDVVVEA-VVENPKVK--AAVLAEVEQKVRE----DTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVE 462 (715)
T ss_pred hcCCCEEEec-ccCcHHHH--HHHHHHHHhhCCC----CcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEE
Confidence 4467877653 33333322 4889999999998 45444432 111000000000000111111111 0
Q ss_pred -cCc---cccCHHHHHHHHHhcCCceeEEEEcCCc
Q 022515 258 -LTG---TERDEKEWTKLFTYAGFSDYKIIPILGL 288 (296)
Q Consensus 258 -~~g---~~rt~~e~~~ll~~aGf~~~~~~~~~~~ 288 (296)
..| ...+.+...++++..|...+.+...+++
T Consensus 463 vv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (715)
T PRK11730 463 VIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGF 497 (715)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCch
Confidence 011 1235577788899999998888777765
No 397
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=58.55 E-value=6.7 Score=32.36 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=32.1
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
..|+..|... ++.|+.+||+.+|+++..++++|..+...|
T Consensus 4 ~~IL~~L~~~-~~~t~~eLA~~lgis~~tV~~~L~~Le~~G 43 (203)
T TIGR02702 4 EDILSYLLKQ-GQATAAALAEALAISPQAVRRHLKDLETEG 43 (203)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3456666543 689999999999999999999888876654
No 398
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=58.20 E-value=7.9 Score=21.66 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=20.3
Q ss_pred CCCHHHHHHHcCCCCcchhhhHHHhhhc
Q 022515 50 PMTLNELVSALTINPSKSRCQLRTWFQN 77 (296)
Q Consensus 50 ~~t~~eLA~~~~~~~~~l~~~l~~~~~~ 77 (296)
|+|-.|||+.+|+.++-+.|.+..+-+.
T Consensus 2 ~mtr~diA~~lG~t~ETVSR~l~~l~~~ 29 (32)
T PF00325_consen 2 PMTRQDIADYLGLTRETVSRILKKLERQ 29 (32)
T ss_dssp E--HHHHHHHHTS-HHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHhCCcHHHHHHHHHHHHHc
Confidence 5788999999999999888877665544
No 399
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=57.72 E-value=15 Score=28.74 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=31.3
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCC
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE 185 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~ 185 (296)
.+-|+|+|=|.|..=-+|.+.+|+-++.++|..-.+--.. ..+.=.++.||+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~-~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSS-TPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG----GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCC-CCchHheeeccHHH
Confidence 3679999999999999999999999999999622111111 12333677788776
No 400
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=57.68 E-value=19 Score=26.60 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=33.0
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|... ++.|..+||+.++++...+.+.+....+.|
T Consensus 29 ~q~~iL~~l~~~-~~~t~~ela~~~~~~~~tvs~~l~~Le~~G 70 (118)
T TIGR02337 29 QQWRILRILAEQ-GSMEFTQLANQACILRPSLTGILARLERDG 70 (118)
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHhCCCchhHHHHHHHHHHCC
Confidence 445567777653 689999999999999999988777766554
No 401
>PRK13239 alkylmercury lyase; Provisional
Probab=57.59 E-value=6.7 Score=32.46 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=29.7
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHh
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTW 74 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~ 74 (296)
..-|+..|++ |.|.|.++||+.+|.+...++..|.+.
T Consensus 24 ~~~llr~la~-G~pvt~~~lA~~~~~~~~~v~~~L~~l 60 (206)
T PRK13239 24 LVPLLRLLAK-GRPVSVTTLAAALGWPVEEVEAVLEAM 60 (206)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHhCCCHHHHHHHHHhC
Confidence 3445667775 689999999999999999988766653
No 402
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=57.25 E-value=22 Score=32.51 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=65.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC------CCC-CeeEEeccCCCC---CC-ccceeEe
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS------DLA-NLKYVGGDMFEA---IS-PADAVLL 195 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~-ri~~~~~D~~~~---~p-~~D~v~~ 195 (296)
.+..++||.=+|+|.-++..+...++ .+++.-|+ |+.++..++ ..+ ++++...|...- .. .||+|=+
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 34579999999999999999999665 47888899 887776655 334 788888886551 22 4888866
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
- |-.-...+|..+.++++. ||.|.|+-+-.
T Consensus 128 D------PfGSp~pfldsA~~~v~~---gGll~vTaTD~ 157 (377)
T PF02005_consen 128 D------PFGSPAPFLDSALQAVKD---GGLLCVTATDT 157 (377)
T ss_dssp --------SS--HHHHHHHHHHEEE---EEEEEEEE--H
T ss_pred C------CCCCccHhHHHHHHHhhc---CCEEEEecccc
Confidence 2 222345789999999998 88888876533
No 403
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=57.22 E-value=13 Score=28.93 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=20.3
Q ss_pred EecCCch--HHHHHHH--HHCCCCeEEeccc-hhHhh
Q 022515 136 DVGGGIG--TAAKAIA--KAFPKLECTCFDL-PHVVN 167 (296)
Q Consensus 136 DvGgG~G--~~~~~l~--~~~p~~~~~~~D~-~~~~~ 167 (296)
|||++.| .....+. ...|..+++.++. |...+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~ 37 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFE 37 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHH
Confidence 8999999 6666554 4568889999998 77644
No 404
>PTZ00117 malate dehydrogenase; Provisional
Probab=56.56 E-value=90 Score=27.73 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=38.8
Q ss_pred CCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEe-ccCCCCCCccceeEehh
Q 022515 131 LNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVG-GDMFEAISPADAVLLKW 197 (296)
Q Consensus 131 ~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~-~D~~~~~p~~D~v~~~~ 197 (296)
..+|.=||+|+ |.....++....-...+++|+ ++..+ +.. ......+.. .|+. ...++|+|+...
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45899999998 776666555543357888998 43322 211 122234333 4433 556789988855
No 405
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=56.06 E-value=42 Score=32.81 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=52.4
Q ss_pred CEEEEecCCchHHHHHHHHH--CCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhhcc
Q 022515 132 NSLVDVGGGIGTAAKAIAKA--FPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWILHD 201 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vlh~ 201 (296)
.+|+=+|+ |.++..+++. ..+..++++|. |+.++.+++ ....+..||..++ ..++|++++.. +
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g~~v~~GDat~~~~L~~agi~~A~~vv~~~--~- 473 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK--YGYKVYYGDATQLELLRAAGAEKAEAIVITC--N- 473 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--CCCeEEEeeCCCHHHHHhcCCccCCEEEEEe--C-
Confidence 45665654 4444444442 23678999999 888888863 3467888998873 23588777642 1
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
+++....+...+++ +.| ..+++.
T Consensus 474 -d~~~n~~i~~~~r~-~~p---~~~Iia 496 (601)
T PRK03659 474 -EPEDTMKIVELCQQ-HFP---HLHILA 496 (601)
T ss_pred -CHHHHHHHHHHHHH-HCC---CCeEEE
Confidence 33444555555554 555 466655
No 406
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=55.99 E-value=31 Score=29.56 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=32.5
Q ss_pred CcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 39 GIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 39 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.|.++|.+. |.++++|||+.+++++.-.+|-|.+.-..|
T Consensus 9 ~Il~~l~~~-g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g 47 (253)
T COG1349 9 KILELLKEK-GKVSVEELAELFGVSEMTIRRDLNELEEQG 47 (253)
T ss_pred HHHHHHHHc-CcEEHHHHHHHhCCCHHHHHHhHHHHHHCC
Confidence 467788774 789999999999999999999887766554
No 407
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=55.68 E-value=17 Score=29.45 Aligned_cols=56 Identities=11% Similarity=0.222 Sum_probs=33.3
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
+|.......+.+++.+.++| |..|++.+. +... . .. .....+...|++.||+.+
T Consensus 132 D~~~~~~~~i~~~~~~~~~~---g~Iil~Hd~---~~~~-----~--t~-------------~~l~~~i~~l~~~Gy~~v 185 (191)
T TIGR02764 132 DWKNPGVESIVDRVVKNTKP---GDIILLHAS---DSAK-----Q--TV-------------KALPTIIKKLKEKGYEFV 185 (191)
T ss_pred ccCCCCHHHHHHHHHhcCCC---CCEEEEeCC---CCcH-----h--HH-------------HHHHHHHHHHHHCCCEEE
Confidence 34333344678888888898 776666651 1100 0 00 034567778889999877
Q ss_pred EE
Q 022515 281 KI 282 (296)
Q Consensus 281 ~~ 282 (296)
.+
T Consensus 186 tl 187 (191)
T TIGR02764 186 TI 187 (191)
T ss_pred EH
Confidence 65
No 408
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=55.28 E-value=3.8 Score=26.39 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=26.3
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhH
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQL 71 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l 71 (296)
++.|++.|-+ .+..|+.|||+.+|++++-+...+
T Consensus 7 q~~Ll~~L~~-~~~~~~~ela~~l~~S~rti~~~i 40 (59)
T PF08280_consen 7 QLKLLELLLK-NKWITLKELAKKLNISERTIKNDI 40 (59)
T ss_dssp HHHHHHHHHH-HTSBBHHHHHHHCTS-HHHHHHHH
T ss_pred HHHHHHHHHc-CCCCcHHHHHHHHCCCHHHHHHHH
Confidence 4566777765 378999999999999998887643
No 409
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=55.24 E-value=15 Score=35.54 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccch
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDLP 163 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~~ 163 (296)
.+-..|. .+.+...|||++|..|.++.--++..|- .-++++|+.
T Consensus 34 Qln~ky~-fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~ 78 (780)
T KOG1098|consen 34 QLNKKYK-FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLV 78 (780)
T ss_pred HHHHHhc-cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeee
Confidence 3445555 2567789999999999999988888874 458899983
No 410
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=55.06 E-value=18 Score=27.57 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=31.7
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.||++.+.+-.- .. +++.|+++||+.+++++..+++-|....+.|
T Consensus 9 YAl~~l~~La~~---~~-~~~~s~~~ia~~~~ip~~~l~kil~~L~~~g 53 (135)
T TIGR02010 9 YAVTAMLDLALN---AE-TGPVTLADISERQGISLSYLEQLFAKLRKAG 53 (135)
T ss_pred HHHHHHHHHHhC---CC-CCcCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 455555555432 22 2589999999999999999988776655443
No 411
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=54.54 E-value=52 Score=28.86 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=42.3
Q ss_pred EEEecCCc--hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC---CCCccceeEehhhhccCCch-H
Q 022515 134 LVDVGGGI--GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE---AISPADAVLLKWILHDWNDE-E 206 (296)
Q Consensus 134 vLDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~---~~p~~D~v~~~~vlh~~~d~-~ 206 (296)
|-=||+|. ..++..|.+ .+.++++.|. ++..+...+.. +.. ..+..+ .....|+|++. .++. .
T Consensus 3 Ig~IGlG~mG~~mA~~L~~--~g~~v~v~dr~~~~~~~~~~~g--~~~-~~s~~~~~~~~~~advVi~~-----vp~~~~ 72 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLRE--DGHEVVGYDVNQEAVDVAGKLG--ITA-RHSLEELVSKLEAPRTIWVM-----VPAGEV 72 (299)
T ss_pred EEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHCC--Cee-cCCHHHHHHhCCCCCEEEEE-----ecCchH
Confidence 44466554 233344443 3567888898 66555443111 111 112111 11125777663 3443 6
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEE
Q 022515 207 CVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 207 ~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
...++..+...+++ |.++|.
T Consensus 73 ~~~v~~~i~~~l~~----g~ivid 92 (299)
T PRK12490 73 TESVIKDLYPLLSP----GDIVVD 92 (299)
T ss_pred HHHHHHHHhccCCC----CCEEEE
Confidence 66778888888887 555443
No 412
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=53.76 E-value=71 Score=23.53 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=40.7
Q ss_pred EEEec--CCchHHHHHHHHHCCCCeEEec-cchh-HhhccCCCCCCee-EEeccCCC-CC--CccceeEehhhhccCCch
Q 022515 134 LVDVG--GGIGTAAKAIAKAFPKLECTCF-DLPH-VVNGLDSDLANLK-YVGGDMFE-AI--SPADAVLLKWILHDWNDE 205 (296)
Q Consensus 134 vLDvG--gG~G~~~~~l~~~~p~~~~~~~-D~~~-~~~~a~~~~~ri~-~~~~D~~~-~~--p~~D~v~~~~vlh~~~d~ 205 (296)
+.=+| |-.|......+...|+.+++.+ +.+. .-+.++.....+. ....++.. .+ .++|++++. .+++
T Consensus 2 i~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~-----~~~~ 76 (122)
T smart00859 2 VAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLA-----LPHG 76 (122)
T ss_pred EEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEc-----CCcH
Confidence 33456 2356666666777788877666 4331 1111111122221 11112221 22 358988773 3566
Q ss_pred HHHHHHHHHHHhccc
Q 022515 206 ECVKILKKCKEAITS 220 (296)
Q Consensus 206 ~~~~iL~~~~~aL~p 220 (296)
...+++..+.+.+++
T Consensus 77 ~~~~~~~~~~~~~~~ 91 (122)
T smart00859 77 VSKEIAPLLPKAAEA 91 (122)
T ss_pred HHHHHHHHHHhhhcC
Confidence 666666655566677
No 413
>PRK06545 prephenate dehydrogenase; Validated
Probab=53.44 E-value=56 Score=29.56 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=40.6
Q ss_pred EEEEecCCc--hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHH
Q 022515 133 SLVDVGGGI--GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVK 209 (296)
Q Consensus 133 ~vLDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~ 209 (296)
+|.=||.|. |.++..+.+..+...++..|. +.....+. ...-+.-...|..+...++|+|++. .|......
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~aDlVila-----vP~~~~~~ 75 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARAL-GFGVIDELAADLQRAAAEADLIVLA-----VPVDATAA 75 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHh-cCCCCcccccCHHHHhcCCCEEEEe-----CCHHHHHH
Confidence 455666654 344455555544455555554 22222221 1111111111111123458999885 35556678
Q ss_pred HHHHHHH-hccc
Q 022515 210 ILKKCKE-AITS 220 (296)
Q Consensus 210 iL~~~~~-aL~p 220 (296)
+++++.. .++|
T Consensus 76 vl~~l~~~~l~~ 87 (359)
T PRK06545 76 LLAELADLELKP 87 (359)
T ss_pred HHHHHhhcCCCC
Confidence 8888887 4777
No 414
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.12 E-value=15 Score=25.67 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHcCCCCcchhh
Q 022515 49 KPMTLNELVSALTINPSKSRC 69 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~ 69 (296)
.++|.+++|+++++.+..+++
T Consensus 22 ~~LS~~~iA~~Ln~t~~~lek 42 (97)
T COG4367 22 CPLSDEEIATALNWTEVKLEK 42 (97)
T ss_pred ccccHHHHHHHhCCCHHHHHH
Confidence 589999999999999988887
No 415
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=52.81 E-value=84 Score=29.73 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=59.0
Q ss_pred CEEEEecCCchHHHHHHHHH--CCCCeEEeccc-hhHhhccCCC-----------------CCCeeEEeccCCCCCCccc
Q 022515 132 NSLVDVGGGIGTAAKAIAKA--FPKLECTCFDL-PHVVNGLDSD-----------------LANLKYVGGDMFEAISPAD 191 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-----------------~~ri~~~~~D~~~~~p~~D 191 (296)
.+|.=||.|...+..+.+-+ -++.+++++|. ++.++..++. ..++.+. .|+.+....+|
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~i~~ad 80 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKHVAEAD 80 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHHHhcCC
Confidence 35777888877666554433 34678999999 7777664320 0112222 12211234578
Q ss_pred eeEehh-hhc---------cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515 192 AVLLKW-ILH---------DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237 (296)
Q Consensus 192 ~v~~~~-vlh---------~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~ 237 (296)
++++.- +-. ..+-.....+.+.+.+.|++ |.++|.+...+..
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~----~~lVv~~STvp~G 132 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS----DKIVVEKSTVPVK 132 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC----CcEEEEeCCCCCC
Confidence 886632 111 11222456778888888986 8888888777654
No 416
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=52.56 E-value=33 Score=32.73 Aligned_cols=91 Identities=15% Similarity=0.232 Sum_probs=54.4
Q ss_pred CCCEEEEecCCch-HHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccC------------------CC----
Q 022515 130 GLNSLVDVGGGIG-TAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDM------------------FE---- 185 (296)
Q Consensus 130 ~~~~vLDvGgG~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~------------------~~---- 185 (296)
++.+++=+|+|.= ..+..+++.. +.+++++|. +...+.++.... +++.-|. .+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~lGa--~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSMGA--EFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC--eEEeccccccccccccceeecCHHHHHHHHH
Confidence 4579999998865 5555566665 567999998 777777764211 2211121 10
Q ss_pred ----CCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEE
Q 022515 186 ----AISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVI 228 (296)
Q Consensus 186 ----~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~ll 228 (296)
...++|+++..-.+..-+.+ .-+.++..+.||| |+.++
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKp---GsvIV 281 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKA---GSVIV 281 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCC---CCEEE
Confidence 12358999665433322222 2367788889999 76543
No 417
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=52.42 E-value=8 Score=25.24 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=25.8
Q ss_pred chhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 41 PDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 41 f~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
...|...+++.+..+||+.++++...+.+.+...+..|
T Consensus 9 L~~l~~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~g 46 (68)
T PF13463_consen 9 LRALAHSDGPMTQSDLAERLGISKSTVSRIIKKLEEKG 46 (68)
T ss_dssp HHHHT--TS-BEHHHHHHHTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 33444123799999999999999999998887776644
No 418
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=52.16 E-value=32 Score=34.37 Aligned_cols=150 Identities=11% Similarity=0.073 Sum_probs=82.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------------------CCCCeeEEeccCCCC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------------------DLANLKYVGGDMFEA 186 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~~ri~~~~~D~~~~ 186 (296)
+..+|.=||+|+=.-.++.+-...+..++++|. ++.++.+.+ ...||++.. |+ +.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~ 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SY-AG 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH-HH
Confidence 456899999997655555555555899999999 777765432 124555442 32 23
Q ss_pred CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee-eeCCCCCCCchhhhhhhhhhhhhh--------h
Q 022515 187 ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM-IRENKKGDDKSIETQLFFDMLMMV--------L 257 (296)
Q Consensus 187 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~-~~~~~~~~~~~~~~~~~~~~~~~~--------~ 257 (296)
..++|+|+=. |..+++-. .++++++-+.++| +.|+...+ ..+-..-............++.+. .
T Consensus 390 ~~~aDlViEa-v~E~l~~K--~~vf~~l~~~~~~----~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvE 462 (714)
T TIGR02437 390 FDNVDIVVEA-VVENPKVK--AAVLAEVEQHVRE----DAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVE 462 (714)
T ss_pred hcCCCEEEEc-CcccHHHH--HHHHHHHHhhCCC----CcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEe
Confidence 4467887764 44333333 4889999999998 45544432 111100000000000112222111 0
Q ss_pred -cCcc---ccCHHHHHHHHHhcCCceeEEEEcCCc
Q 022515 258 -LTGT---ERDEKEWTKLFTYAGFSDYKIIPILGL 288 (296)
Q Consensus 258 -~~g~---~rt~~e~~~ll~~aGf~~~~~~~~~~~ 288 (296)
..|. ..+.+...+++++.|...+.+...+++
T Consensus 463 vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (714)
T TIGR02437 463 VIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGF 497 (714)
T ss_pred ecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccc
Confidence 0111 225566778888999888887666665
No 419
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=52.13 E-value=1.2e+02 Score=28.00 Aligned_cols=128 Identities=14% Similarity=0.211 Sum_probs=67.8
Q ss_pred CCCCEEEEecCCchHHHHH-HHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCC-chH
Q 022515 129 EGLNSLVDVGGGIGTAAKA-IAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWN-DEE 206 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~-l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~-d~~ 206 (296)
.+..=|+-+||+.|..... ..+..|- -.|.++-..- -.||...-...-|+.++.+|.---. ..-
T Consensus 92 g~i~Gvi~~GGs~GT~lat~aMr~LPi------G~PKlmVST~--------ASGd~~~yvg~sDI~mm~SVvDiaGlN~i 157 (403)
T PF06792_consen 92 GKIDGVIGIGGSGGTALATAAMRALPI------GFPKLMVSTM--------ASGDTSPYVGESDITMMYSVVDIAGLNSI 157 (403)
T ss_pred CCccEEEEecCCccHHHHHHHHHhCCC------CCCeEEEEcc--------CCCCcccccCcCCEEEeeeccccccCCHH
Confidence 3456799999998876643 4445541 1133221111 1223322223356666655553222 223
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515 207 CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 207 ~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 286 (296)
...+|+|+..++. |-.-..+..... ... -...+.| +|-........++.|++.||++.-.+..+
T Consensus 158 sr~vL~NAA~Ai~-----GM~~~~~~~~~~-~~k-------p~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG 221 (403)
T PF06792_consen 158 SRRVLSNAAGAIA-----GMAKAYESPNQQ-EDK-------PLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATG 221 (403)
T ss_pred HHHHHHHHHHHHH-----HHhccccccccc-CCC-------cEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 4588899888875 332211111110 111 1233333 34444567899999999999998877664
No 420
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=51.94 E-value=1.2e+02 Score=27.41 Aligned_cols=94 Identities=9% Similarity=0.033 Sum_probs=55.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCCC-ccceeEehhhhccCCc--hH
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAIS-PADAVLLKWILHDWND--EE 206 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~p-~~D~v~~~~vlh~~~d--~~ 206 (296)
..++||=+|.-...+...|.. ...++...+...-....+....++.|- .++..+.+ .+|.+++. ||. +.
T Consensus 19 ~~~~~l~~~~~~d~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~d~~~~~-----~pk~k~~ 90 (342)
T PRK09489 19 EQRRVLFAGDLQDDLPAQLDA--ASVRVHTQQFHHWQVLSRQMGDNARFS-LVATAEDVADCDTLIYY-----WPKNKQE 90 (342)
T ss_pred CCCcEEEEcCcchhhHHhhhc--cceEEehhhhHHHHHHHhhcCCceEec-cccCCccCCCCCEEEEE-----CCCCHHH
Confidence 446788898888888877652 223343333322211111123334433 23333333 59988873 563 34
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 207 CVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 207 ~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
+.-.|.++.+.|+| ||.|+++....
T Consensus 91 ~~~~l~~~~~~l~~---g~~i~~~G~~~ 115 (342)
T PRK09489 91 AQFQLMNLLSLLPV---GTDIFVVGENR 115 (342)
T ss_pred HHHHHHHHHHhCCC---CCEEEEEEecc
Confidence 56789999999999 99999887543
No 421
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=51.85 E-value=10 Score=28.23 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=54.0
Q ss_pred CchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEe--ccCCC---C-CC--ccceeEehhhhccCCchHHHHH
Q 022515 140 GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVG--GDMFE---A-IS--PADAVLLKWILHDWNDEECVKI 210 (296)
Q Consensus 140 G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~D~~~---~-~p--~~D~v~~~~vlh~~~d~~~~~i 210 (296)
|.|.++..+++... .++++.|. +.-.+.+++......+.. .|+.+ . .+ ++|+++-.- .. ...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g~---~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----GS---GDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESS-----SS---HHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEec-----Cc---HHH
Confidence 46889999999886 99999998 767777764221111111 11111 1 22 478887642 21 256
Q ss_pred HHHHHHhcccCCCCcEEEEEeeee
Q 022515 211 LKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 211 L~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
++...++++| +|+++++-...
T Consensus 72 ~~~~~~~l~~---~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRP---GGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEE---EEEEEEESSTS
T ss_pred HHHHHHHhcc---CCEEEEEEccC
Confidence 8889999999 89999988655
No 422
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=51.63 E-value=13 Score=29.39 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=31.9
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
..|+++|..+ +.+|-+|||+.+|++...+++.|......+
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~ 56 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGIKLNEVRKALYALYDAG 56 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 3467777643 789999999999999999998777666544
No 423
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=51.18 E-value=14 Score=31.23 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=44.0
Q ss_pred CCCEEEEecCCchHHHHH-H--HHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEec----cCCCC-CC---cc
Q 022515 130 GLNSLVDVGGGIGTAAKA-I--AKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGG----DMFEA-IS---PA 190 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~-l--~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~----D~~~~-~p---~~ 190 (296)
+..++||||-|.- .+. | +..| +.++++-|+ +..++.|+. +...|+.... -+|.. .. .|
T Consensus 78 ~~i~~LDIGvGAn--CIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGAN--CIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCcc--cccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccccccee
Confidence 5578999976543 321 1 2223 678999999 777777764 3344555432 23332 22 39
Q ss_pred ceeEehhhhccCC
Q 022515 191 DAVLLKWILHDWN 203 (296)
Q Consensus 191 D~v~~~~vlh~~~ 203 (296)
|+.+|+=-+|.-.
T Consensus 155 d~tlCNPPFh~s~ 167 (292)
T COG3129 155 DATLCNPPFHDSA 167 (292)
T ss_pred eeEecCCCcchhH
Confidence 9999998888543
No 424
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=50.95 E-value=13 Score=24.18 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=29.5
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
..|+..+.. ++.+..|||+.++++...+.+.+..+...+
T Consensus 10 ~~il~~l~~--~~~~~~ei~~~~~i~~~~i~~~l~~L~~~g 48 (78)
T cd00090 10 LRILRLLLE--GPLTVSELAERLGLSQSTVSRHLKKLEEAG 48 (78)
T ss_pred HHHHHHHHH--CCcCHHHHHHHHCcCHhHHHHHHHHHHHCC
Confidence 345556655 349999999999999988888777765544
No 425
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=50.69 E-value=73 Score=29.18 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=55.9
Q ss_pred EEEEecCCchHHHHHHHHHCCCCeEEeccchhHh-----hccCC---CCCCeeEEeccCCCCCC-ccceeEehhhhccCC
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVV-----NGLDS---DLANLKYVGGDMFEAIS-PADAVLLKWILHDWN 203 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~-----~~a~~---~~~ri~~~~~D~~~~~p-~~D~v~~~~vlh~~~ 203 (296)
+||=++=.-|.+++.++...|. ...|. .+. .+++. ..+.+++. +...+.| ++|+|++. ||
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~---~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~~~~~d~vl~~-----~P 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY---SIGDS-YISELATRENLRLNGIDESSVKFL--DSTADYPQQPGVVLIK-----VP 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC---eeehH-HHHHHHHHHHHHHcCCCcccceee--cccccccCCCCEEEEE-----eC
Confidence 7999999999999999976552 33553 222 22221 12224443 4444555 48998884 45
Q ss_pred ch--HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 204 DE--ECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 204 d~--~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
.. .....|..+.+.++| |+.|++.+..
T Consensus 116 K~~~~l~~~l~~l~~~l~~---~~~ii~g~~~ 144 (378)
T PRK15001 116 KTLALLEQQLRALRKVVTS---DTRIIAGAKA 144 (378)
T ss_pred CCHHHHHHHHHHHHhhCCC---CCEEEEEEec
Confidence 33 456778999999999 8887766543
No 426
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=50.42 E-value=1e+02 Score=25.30 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=38.1
Q ss_pred CCCEEEEecCCchHHH--HHHHHHCCCCeEEeccc---hhHhhccCCCCCCeeEEeccCCC-CCCccceeEeh
Q 022515 130 GLNSLVDVGGGIGTAA--KAIAKAFPKLECTCFDL---PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLK 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~--~~l~~~~p~~~~~~~D~---~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~ 196 (296)
.+.+||=||||.=... ..|++. +.++++++. ++..+.+ ...++.+....+.. .+.++|+|++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~--~~~~i~~~~~~~~~~~l~~adlViaa 77 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLV--EEGKIRWKQKEFEPSDIVDAFLVIAA 77 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHH--hCCCEEEEecCCChhhcCCceEEEEc
Confidence 4578999999865443 234443 457777763 2222222 23567777666655 46678988884
No 427
>CHL00194 ycf39 Ycf39; Provisional
Probab=49.77 E-value=1.8e+02 Score=25.47 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=38.1
Q ss_pred EEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC------CCccceeEeh
Q 022515 133 SLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA------ISPADAVLLK 196 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~------~p~~D~v~~~ 196 (296)
+|| |=||+|....++++.. .+.++++++. +.-.... ...+++++.+|+.++ +.+.|+|+..
T Consensus 2 kIl-VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l--~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~ 71 (317)
T CHL00194 2 SLL-VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL--KEWGAELVYGDLSLPETLPPSFKGVTAIIDA 71 (317)
T ss_pred EEE-EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH--hhcCCEEEECCCCCHHHHHHHHCCCCEEEEC
Confidence 344 4578888888777653 3567887776 3222111 234689999999873 2357887763
No 428
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=49.72 E-value=1e+02 Score=27.39 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=56.0
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhh-ccCC------CCCCeeEEeccCCCCCCccceeEehhh
Q 022515 129 EGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVN-GLDS------DLANLKYVGGDMFEAISPADAVLLKWI 198 (296)
Q Consensus 129 ~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~-~a~~------~~~ri~~~~~D~~~~~p~~D~v~~~~v 198 (296)
+.+.+|.=||+|. |......+...+-. +..++|+ ++.++ .+.. ...++....+|+ +...++|+|++..-
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag 82 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAG 82 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecC
Confidence 3457899999877 55555555444433 6888897 33221 1111 123455555543 34567899888543
Q ss_pred hccCC---ch----HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 199 LHDWN---DE----ECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 199 lh~~~---d~----~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.-.-+ .. ....+++++...++...|.++++++.
T Consensus 83 ~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 83 APQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 31111 11 23566777665554222368877765
No 429
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=49.66 E-value=45 Score=33.34 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=80.0
Q ss_pred CCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC----------------------CCCCeeEEeccCCC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS----------------------DLANLKYVGGDMFE 185 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----------------------~~~ri~~~~~D~~~ 185 (296)
...+|.=||+|+=...++..-. ..+..++.+|. ++.++.+.+ ...||++.. |+ +
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~-~ 385 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DY-R 385 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-Ch-H
Confidence 4578999999884333333333 45889999998 777666432 124566552 33 3
Q ss_pred CCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee-eCCCCCCCchhhhhhhhhhhhhh--------
Q 022515 186 AISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI-RENKKGDDKSIETQLFFDMLMMV-------- 256 (296)
Q Consensus 186 ~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~-~~~~~~~~~~~~~~~~~~~~~~~-------- 256 (296)
...++|+|+=. +..+.+- -.++++++-+.++| +.|+...+. .+-..-............++.+.
T Consensus 386 ~~~~aDlViEa-v~E~~~~--K~~v~~~le~~~~~----~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lV 458 (708)
T PRK11154 386 GFKHADVVIEA-VFEDLAL--KQQMVAEVEQNCAP----HTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLV 458 (708)
T ss_pred HhccCCEEeec-ccccHHH--HHHHHHHHHhhCCC----CcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceE
Confidence 34567877654 3333222 24889999999998 455544321 11000000000000111111110
Q ss_pred h-cCc---cccCHHHHHHHHHhcCCceeEEEEcCCc
Q 022515 257 L-LTG---TERDEKEWTKLFTYAGFSDYKIIPILGL 288 (296)
Q Consensus 257 ~-~~g---~~rt~~e~~~ll~~aGf~~~~~~~~~~~ 288 (296)
. ..| ...+.+...+++++.|...+.+...+++
T Consensus 459 Evv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGf 494 (708)
T PRK11154 459 EVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAGF 494 (708)
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCcH
Confidence 0 011 1224566678888899988877766654
No 430
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=49.44 E-value=64 Score=31.12 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=51.0
Q ss_pred CEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhhcc
Q 022515 132 NSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWILHD 201 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vlh~ 201 (296)
.+++=+|| |..+..+++.. .+..++++|. ++.++.++ ......+.||..++ ..++|.++..- .
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~--~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~--~- 490 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELR--ERGIRAVLGNAANEEIMQLAHLDCARWLLLTI--P- 490 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHH--HCCCeEEEcCCCCHHHHHhcCccccCEEEEEc--C-
Confidence 34555554 45555555543 2568999998 88888776 34588899999873 12578665421 1
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
+|++...+...+ +...| ..+++.
T Consensus 491 -~~~~~~~iv~~~-~~~~~---~~~iia 513 (558)
T PRK10669 491 -NGYEAGEIVASA-REKRP---DIEIIA 513 (558)
T ss_pred -ChHHHHHHHHHH-HHHCC---CCeEEE
Confidence 233333445544 44456 455554
No 431
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=49.22 E-value=1.1e+02 Score=25.88 Aligned_cols=92 Identities=17% Similarity=0.103 Sum_probs=53.0
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCe-EEeccc-hhHhhccCCC--CCCeeEEeccCCCCCCccceeEehhhhccC
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDSD--LANLKYVGGDMFEAISPADAVLLKWILHDW 202 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~--~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~ 202 (296)
..++.+||=.|+|. |..+..+++.. +.+ +++.+. ++..+.+++. .+.+.....+ .....++|+++-..
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~d~vl~~~----- 167 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPVAADTAD-EIGGRGADVVIEAS----- 167 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccccccchh-hhcCCCCCEEEEcc-----
Confidence 55677888888765 67777777776 455 888886 6666555432 1211111000 00122478877531
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
... ..+....+.+++ +|+++.+..
T Consensus 168 ~~~---~~~~~~~~~l~~---~g~~~~~g~ 191 (277)
T cd08255 168 GSP---SALETALRLLRD---RGRVVLVGW 191 (277)
T ss_pred CCh---HHHHHHHHHhcC---CcEEEEEec
Confidence 111 246677788898 898876643
No 432
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=49.05 E-value=1.4e+02 Score=25.59 Aligned_cols=99 Identities=11% Similarity=0.133 Sum_probs=62.1
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-h----hHhhccCCCCCCeeEEeccCCCCC------CccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-P----HVVNGLDSDLANLKYVGGDMFEAI------SPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~----~~~~~a~~~~~ri~~~~~D~~~~~------p~~D~v~~ 195 (296)
.+++.+||=+|.++|....++..-- |.--+..++. + ..+..|+ ...+|--+.-|...|. +-.|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk-kRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK-KRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh-ccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 6788999999999999988877643 4444444443 1 2333444 3445555556776653 23577766
Q ss_pred hhhhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 196 KWILHDWN-DEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 196 ~~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
+.+ .+++.-+.-++.--|++ ||.++|.=....
T Consensus 233 -----Dvaqpdq~RivaLNA~~FLk~---gGhfvisikanc 265 (317)
T KOG1596|consen 233 -----DVAQPDQARIVALNAQYFLKN---GGHFVISIKANC 265 (317)
T ss_pred -----cCCCchhhhhhhhhhhhhhcc---CCeEEEEEeccc
Confidence 333 33444455678888999 898887654433
No 433
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=48.88 E-value=25 Score=27.69 Aligned_cols=83 Identities=25% Similarity=0.339 Sum_probs=43.7
Q ss_pred EEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCc-hHHH
Q 022515 133 SLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWND-EECV 208 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d-~~~~ 208 (296)
+|-=||. |.+...++++. .+.++++.|+ ++.++...+. .++.. .+..+-....|+|++. .++ +...
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~--g~~~~-~s~~e~~~~~dvvi~~-----v~~~~~v~ 72 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA--GAEVA-DSPAEAAEQADVVILC-----VPDDDAVE 72 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT--TEEEE-SSHHHHHHHBSEEEE------SSSHHHHH
T ss_pred EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh--hhhhh-hhhhhHhhcccceEee-----cccchhhh
Confidence 3444555 44554454432 3678999998 7666655421 12221 1111111246888773 344 5566
Q ss_pred HHHHH--HHHhcccCCCCcEEEE
Q 022515 209 KILKK--CKEAITSDGKKGKVII 229 (296)
Q Consensus 209 ~iL~~--~~~aL~p~~~gG~lli 229 (296)
.++.. +...|++ |.++|
T Consensus 73 ~v~~~~~i~~~l~~----g~iii 91 (163)
T PF03446_consen 73 AVLFGENILAGLRP----GKIII 91 (163)
T ss_dssp HHHHCTTHGGGS-T----TEEEE
T ss_pred hhhhhhHHhhcccc----ceEEE
Confidence 77887 8888887 66555
No 434
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=48.75 E-value=17 Score=27.50 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++.|+.|||+++++++..+.+.+....+.|
T Consensus 24 ~~~s~~eia~~l~is~~~v~~~l~~L~~~G 53 (130)
T TIGR02944 24 QPYSAAEIAEQTGLNAPTVSKILKQLSLAG 53 (130)
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 689999999999999999999887776654
No 435
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=48.71 E-value=43 Score=29.39 Aligned_cols=84 Identities=19% Similarity=0.275 Sum_probs=46.8
Q ss_pred EEEEecCCch--HHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC---CCCccceeEehhhhccCCchH
Q 022515 133 SLVDVGGGIG--TAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE---AISPADAVLLKWILHDWNDEE 206 (296)
Q Consensus 133 ~vLDvGgG~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~---~~p~~D~v~~~~vlh~~~d~~ 206 (296)
+|-=||+|.= .++..|++ .+.++++.|. ++.++...+. .+... .+..+ .....|+|++. .|+..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~--~g~~V~~~dr~~~~~~~l~~~--g~~~~-~s~~~~~~~~~~~dvIi~~-----vp~~~ 71 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAK--RGHDCVGYDHDQDAVKAMKED--RTTGV-ANLRELSQRLSAPRVVWVM-----VPHGI 71 (298)
T ss_pred EEEEEcchHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHc--CCccc-CCHHHHHhhcCCCCEEEEE-----cCchH
Confidence 3555777652 23333333 3568888998 7666554421 11111 11111 12346888774 35556
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEE
Q 022515 207 CVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 207 ~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
...++..+...+++ |.++|.
T Consensus 72 ~~~v~~~l~~~l~~----g~ivid 91 (298)
T TIGR00872 72 VDAVLEELAPTLEK----GDIVID 91 (298)
T ss_pred HHHHHHHHHhhCCC----CCEEEE
Confidence 67888899988987 565544
No 436
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=48.53 E-value=20 Score=28.55 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=33.8
Q ss_pred ccceeEehhhhccCC---------chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 189 PADAVLLKWILHDWN---------DEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~---------d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
.||.+.+.+++.|.. ...-.+.++++.+.||| ||.+++.-++-.+
T Consensus 63 ~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~---GG~L~l~vPvG~d 116 (177)
T PF03269_consen 63 SFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKP---GGLLFLGVPVGTD 116 (177)
T ss_pred cchhhheechhccccccccCCCCCccccHHHHHHHHHhhcc---CCeEEEEeecCCc
Confidence 489998888886652 11225678889999999 9999998877653
No 437
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=47.94 E-value=17 Score=32.21 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=23.6
Q ss_pred EEEEecCCc--hHHHHHHHHHCCCCeEEeccc
Q 022515 133 SLVDVGGGI--GTAAKAIAKAFPKLECTCFDL 162 (296)
Q Consensus 133 ~vLDvGgG~--G~~~~~l~~~~p~~~~~~~D~ 162 (296)
+|+.||.|- |-...-++.++|+++++++|.
T Consensus 3 kiccigagyvggptcavia~kcp~i~vtvvd~ 34 (481)
T KOG2666|consen 3 KICCIGAGYVGGPTCAVIALKCPDIEVTVVDI 34 (481)
T ss_pred eEEEecCcccCCcchheeeecCCceEEEEEec
Confidence 578888773 445555677899999999998
No 438
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=47.74 E-value=14 Score=23.96 Aligned_cols=31 Identities=16% Similarity=0.379 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 48 GKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 48 ~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+++++..+||+++|+.+.-+...+...-..|
T Consensus 20 ~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~G 50 (60)
T PF01325_consen 20 GGPVRTKDIAERLGVSPPTVTEMLKRLAEKG 50 (60)
T ss_dssp TSSBBHHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHCCChHHHHHHHHHHHHCC
Confidence 4799999999999999988877666555443
No 439
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=47.31 E-value=17 Score=29.43 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=35.2
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++..|.+.|...|...|+.+||+++|++-+.+-|+|-.+.+++
T Consensus 5 ~~~~i~~~l~~~~~~~~a~~i~k~l~i~k~~vNr~LY~L~~~~ 47 (183)
T PHA02701 5 CASLILTLLSSSGDKLPAKRIAKELGISKHEANRCLYRLLESD 47 (183)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCccHHHHHHHHHHHhhcC
Confidence 4567888898754369999999999999998988887777665
No 440
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=46.85 E-value=55 Score=29.14 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=58.3
Q ss_pred CCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC---CCCccceeEehhhhccCCc
Q 022515 131 LNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE---AISPADAVLLKWILHDWND 204 (296)
Q Consensus 131 ~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~---~~p~~D~v~~~~vlh~~~d 204 (296)
+.+|+=||||. |..+..++--. +.+++++|+ ..-+..... ...|++...-+... ...++|+++-.=.+ +-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLI---pg 243 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLI---PG 243 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEe---cC
Confidence 46788899885 56666665543 678999998 555554443 56777776655443 35679988764322 32
Q ss_pred hHH-HHHHHHHHHhcccCCCCcEE
Q 022515 205 EEC-VKILKKCKEAITSDGKKGKV 227 (296)
Q Consensus 205 ~~~-~~iL~~~~~aL~p~~~gG~l 227 (296)
.++ .-+.++..+.||| |+.|
T Consensus 244 akaPkLvt~e~vk~Mkp---GsVi 264 (371)
T COG0686 244 AKAPKLVTREMVKQMKP---GSVI 264 (371)
T ss_pred CCCceehhHHHHHhcCC---CcEE
Confidence 222 2457788899999 6643
No 441
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=46.60 E-value=69 Score=31.47 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=54.2
Q ss_pred CEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhhccC
Q 022515 132 NSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWILHDW 202 (296)
Q Consensus 132 ~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vlh~~ 202 (296)
.+|+=+|||. |......+++. +.+++++|. ++.++.+++ ....+..||..++ ..++|++++.. -
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~--~g~~v~~GDat~~~~L~~agi~~A~~vvv~~----~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRK--FGMKVFYGDATRMDLLESAGAAKAEVLINAI----D 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHh--cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe----C
Confidence 5777787664 44444444443 678999999 888888763 3567888998873 12578777642 1
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
+++.+..+...+++ +.| .-++++
T Consensus 474 d~~~n~~i~~~ar~-~~p---~~~iia 496 (621)
T PRK03562 474 DPQTSLQLVELVKE-HFP---HLQIIA 496 (621)
T ss_pred CHHHHHHHHHHHHH-hCC---CCeEEE
Confidence 34445555555554 455 455554
No 442
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=46.51 E-value=19 Score=23.82 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=27.3
Q ss_pred cchhcccCCCCCCHHHHHHHcCCC-----CcchhhhHHHhhhcC
Q 022515 40 IPDIISKHGKPMTLNELVSALTIN-----PSKSRCQLRTWFQND 78 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~~-----~~~l~~~l~~~~~~~ 78 (296)
|+++|.+.++|++..+|++.+... ++.++++|.+.=+.|
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 456777767899999999998653 355666776654443
No 443
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=46.28 E-value=1.3e+02 Score=26.53 Aligned_cols=98 Identities=19% Similarity=0.166 Sum_probs=50.2
Q ss_pred EEEEecCCc-hHHHHHHHHHCCC-CeEEeccc-hhHhhc-cCC-------CCCCeeEEeccCCCCCCccceeEehhhhcc
Q 022515 133 SLVDVGGGI-GTAAKAIAKAFPK-LECTCFDL-PHVVNG-LDS-------DLANLKYVGGDMFEAISPADAVLLKWILHD 201 (296)
Q Consensus 133 ~vLDvGgG~-G~~~~~l~~~~p~-~~~~~~D~-~~~~~~-a~~-------~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~ 201 (296)
+|.=||+|. |......+....- -+++++|. ++..+. +.. ....+.+..+++ +...++|+|++..-.-.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~~ 80 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAPQ 80 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCCC
Confidence 577788765 3333333333322 37888897 544322 221 123344444433 23457899988543211
Q ss_pred CCc---h----HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 202 WND---E----ECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 202 ~~d---~----~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
-+. . ....+++++.+.++...|.+.++++.
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 111 1 23466777776665433468777765
No 444
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=45.99 E-value=49 Score=21.86 Aligned_cols=34 Identities=9% Similarity=0.216 Sum_probs=26.1
Q ss_pred cchhcccCCCCCCHHHHHHHcCC-CCcchhhhHHHhh
Q 022515 40 IPDIISKHGKPMTLNELVSALTI-NPSKSRCQLRTWF 75 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~-~~~~l~~~l~~~~ 75 (296)
+.+.|.. .+.++.+||..+|+ ++..+.+..+.+.
T Consensus 42 a~~~l~~--~~~~~~~ia~~~g~~s~~~f~r~Fk~~~ 76 (84)
T smart00342 42 ARRLLRD--TDLSVTEIALRVGFSSQSYFSRAFKKLF 76 (84)
T ss_pred HHHHHHc--CCCCHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4566665 47999999999999 8888877555544
No 445
>PRK10637 cysG siroheme synthase; Provisional
Probab=45.85 E-value=88 Score=29.41 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=42.1
Q ss_pred CCCEEEEecCCchHHHH--HHHHHCCCCeEEec--cc-hhHhhccCCCCCCeeEEeccCCC-CCCccceeEeh
Q 022515 130 GLNSLVDVGGGIGTAAK--AIAKAFPKLECTCF--DL-PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLK 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~--~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~ 196 (296)
.+++||=||||.-..-. .|++. +.+++++ ++ ++..+.+ ...+|+++..++.. ++.++++|+..
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~--ga~v~visp~~~~~~~~l~--~~~~i~~~~~~~~~~dl~~~~lv~~a 79 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDA--GARLTVNALAFIPQFTAWA--DAGMLTLVEGPFDESLLDTCWLAIAA 79 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHH--hCCCEEEEeCCCChHHhCCCEEEEEC
Confidence 46899999999876653 33443 5566665 44 3433333 46789999988877 56678887774
No 446
>PRK11524 putative methyltransferase; Provisional
Probab=45.84 E-value=32 Score=30.00 Aligned_cols=41 Identities=7% Similarity=-0.062 Sum_probs=34.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS 171 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 171 (296)
.++..|||-=||+|..+.+-.+. +-+++++|+ ++-++.|.+
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHH
Confidence 46789999999999999776665 668999999 888887764
No 447
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.70 E-value=91 Score=27.05 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=52.2
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--------------C---------CCCeeEEeccCCCCC
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--------------D---------LANLKYVGGDMFEAI 187 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~---------~~ri~~~~~D~~~~~ 187 (296)
.+|.=||+|.=..+++.+-...+.+++++|. ++.++.+++ . ..++++. .|+.+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHHh
Confidence 4688889886544444433334678999998 766655432 0 1244432 2332234
Q ss_pred CccceeEehhhhccCCc-hHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 188 SPADAVLLKWILHDWND-EECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 188 p~~D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
.+.|+|+..-. .+ +-...+++++.+.+++ +.+++.
T Consensus 83 ~~aDlVieavp----e~~~~k~~~~~~l~~~~~~----~~ii~s 118 (287)
T PRK08293 83 KDADLVIEAVP----EDPEIKGDFYEELAKVAPE----KTIFAT 118 (287)
T ss_pred cCCCEEEEecc----CCHHHHHHHHHHHHhhCCC----CCEEEE
Confidence 46888887531 12 2345778888888876 455533
No 448
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=45.43 E-value=1e+02 Score=26.97 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=53.4
Q ss_pred cCCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhccCCCC-CCe-eEEeccCCC-CCCccceeEehhhhccC
Q 022515 128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDL-ANL-KYVGGDMFE-AISPADAVLLKWILHDW 202 (296)
Q Consensus 128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~ri-~~~~~D~~~-~~p~~D~v~~~~vlh~~ 202 (296)
...+.+||-+|+| .|..+..+++.. +.++++.+. ++..+.+++.. +.+ .....+... ...++|+++-..
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~----- 233 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV----- 233 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC-----
Confidence 5566788888886 777777778775 567777776 55555543211 111 100001111 112478776531
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
... ..+..+.+.|++ +|+++.+..
T Consensus 234 ~~~---~~~~~~~~~l~~---~G~~i~~~~ 257 (330)
T cd08245 234 VSG---AAAEAALGGLRR---GGRIVLVGL 257 (330)
T ss_pred CcH---HHHHHHHHhccc---CCEEEEECC
Confidence 111 346677888998 898887753
No 449
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.06 E-value=18 Score=26.50 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=30.5
Q ss_pred HcCcchhcccCCCCCCHHHHHHHc-----CCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSAL-----TINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~-----~~~~~~l~~~l~~~~~~~ 78 (296)
+..|++.|.+.+++.|++||.+.+ +++..-+.|.|..+...|
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 345677776545789999999998 456666777777776655
No 450
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=45.01 E-value=43 Score=33.66 Aligned_cols=150 Identities=17% Similarity=0.100 Sum_probs=80.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------------------CCCCeeEEeccCCCC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------------------DLANLKYVGGDMFEA 186 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~~ri~~~~~D~~~~ 186 (296)
+..+|.=||+|+=...++.+-...+..++++|. ++.++.+.+ ...||++.. |+ +.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~ 411 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL-DY-SG 411 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-CH-HH
Confidence 346899999987544444444445899999998 877766432 124565542 33 23
Q ss_pred CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee-eeCCCCCCCchhhhhhhhhhhhhh--------h
Q 022515 187 ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM-IRENKKGDDKSIETQLFFDMLMMV--------L 257 (296)
Q Consensus 187 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~-~~~~~~~~~~~~~~~~~~~~~~~~--------~ 257 (296)
..++|+|+=. |..++.-. .++++++-+.++| +.|+...+ .++-..-............++.+. .
T Consensus 412 ~~~aDlViEA-v~E~l~~K--~~vf~~l~~~~~~----~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvE 484 (737)
T TIGR02441 412 FKNADMVIEA-VFEDLSLK--HKVIKEVEAVVPP----HCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLE 484 (737)
T ss_pred hccCCeehhh-ccccHHHH--HHHHHHHHhhCCC----CcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEE
Confidence 4457877643 33333322 4889999999998 45544432 211100000000000112222111 0
Q ss_pred -cCcc---ccCHHHHHHHHHhcCCceeEEEEcCCc
Q 022515 258 -LTGT---ERDEKEWTKLFTYAGFSDYKIIPILGL 288 (296)
Q Consensus 258 -~~g~---~rt~~e~~~ll~~aGf~~~~~~~~~~~ 288 (296)
..|. ..+.+...+++++.|...+.+...+++
T Consensus 485 vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGF 519 (737)
T TIGR02441 485 IITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGF 519 (737)
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCc
Confidence 0111 124456677888889887777666665
No 451
>PRK13699 putative methylase; Provisional
Probab=44.79 E-value=72 Score=26.82 Aligned_cols=20 Identities=0% Similarity=0.017 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcccCCCCcEEEEE
Q 022515 208 VKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 208 ~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
...+++++++||| ||.+++.
T Consensus 52 ~~~l~E~~RVLKp---gg~l~if 71 (227)
T PRK13699 52 QPACNEMYRVLKK---DALMVSF 71 (227)
T ss_pred HHHHHHHHHHcCC---CCEEEEE
Confidence 4789999999999 8877663
No 452
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=44.63 E-value=50 Score=32.56 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=34.1
Q ss_pred ccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEe
Q 022515 111 SDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTC 159 (296)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~ 159 (296)
..++.-...++..+. .. ..-.|-.|=|+|.++..+++.||..+++-
T Consensus 306 TGAHYKlRsIL~~~~--i~-~~d~l~~GDGSGGita~lLR~~p~sr~iF 351 (675)
T PF14314_consen 306 TGAHYKLRSILKNLN--IK-YRDALCGGDGSGGITACLLRMNPTSRGIF 351 (675)
T ss_pred ccchhhHHHHHHhcC--CC-cceeEEEecCchHHHHHHHHhCcccceee
Confidence 334444566777666 33 35679999999999999999999988653
No 453
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=44.52 E-value=20 Score=30.02 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=40.6
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhh
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVN 167 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 167 (296)
+..++++-+. .-++++.+|.-=|.|..+..+++++|+++...+|. |-.-+
T Consensus 31 m~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~ 81 (303)
T KOG2782|consen 31 MLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARK 81 (303)
T ss_pred ehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHH
Confidence 3556666665 45778999999999999999999999999999998 54433
No 454
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=44.45 E-value=1e+02 Score=27.48 Aligned_cols=94 Identities=21% Similarity=0.189 Sum_probs=54.4
Q ss_pred cCCCCEEEEecCC-chHHHHHHHHHCCCC-eEEeccc-hhHhhccCCC-CCC-eeEEeccCCCC----CC--ccceeEeh
Q 022515 128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSD-LAN-LKYVGGDMFEA----IS--PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~r-i~~~~~D~~~~----~p--~~D~v~~~ 196 (296)
..++.+||=.|+| .|.++..+++.. +. +++++|. ++-.+.+++. .+. +.....|..+. .+ ++|+++-.
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 4567788888764 466777788876 55 4888887 6666655432 221 11111122110 11 37877642
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
- ..+ ..++...+.+++ ||+++++-..
T Consensus 253 ~-----g~~---~~~~~~~~~~~~---~G~iv~~G~~ 278 (358)
T TIGR03451 253 V-----GRP---ETYKQAFYARDL---AGTVVLVGVP 278 (358)
T ss_pred C-----CCH---HHHHHHHHHhcc---CCEEEEECCC
Confidence 1 111 346667788998 9999887643
No 455
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=44.23 E-value=17 Score=27.99 Aligned_cols=41 Identities=17% Similarity=0.060 Sum_probs=31.5
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+..++..|... +++|..|||+.+++++..+.+.+....+.|
T Consensus 42 q~~vL~~l~~~-~~~t~~eLa~~l~i~~~tvsr~l~~Le~~G 82 (144)
T PRK11512 42 QFKVLCSIRCA-ACITPVELKKVLSVDLGALTRMLDRLVCKG 82 (144)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 33456666543 689999999999999999998777766544
No 456
>PRK11074 putative DNA-binding transcriptional regulator; Provisional
Probab=44.18 E-value=52 Score=28.54 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=28.3
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHh
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTW 74 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~ 74 (296)
+|.+|..+.+ -.++..-|+++++.+..+.+++.+.
T Consensus 6 ~L~~f~~v~e---~~s~s~AA~~L~isQpavS~~I~~L 40 (300)
T PRK11074 6 SLEVVDAVAR---TGSFSAAAQELHRVPSAVSYTVRQL 40 (300)
T ss_pred HHHHHHHHHH---hCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4667888886 4688999999999999999866543
No 457
>PRK08655 prephenate dehydrogenase; Provisional
Probab=43.96 E-value=67 Score=29.99 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=42.1
Q ss_pred EEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHh-hccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHH
Q 022515 133 SLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVV-NGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECV 208 (296)
Q Consensus 133 ~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~ 208 (296)
+|.=|| |+.|......+... +.+++++|. ++.. +.+.+. .+.+ ..|..+....+|+|++.- |.....
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~-G~~V~v~~r~~~~~~~~a~~~--gv~~-~~~~~e~~~~aDvVIlav-----p~~~~~ 72 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK-GFEVIVTGRDPKKGKEVAKEL--GVEY-ANDNIDAAKDADIVIISV-----PINVTE 72 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC-CCEEEEEECChHHHHHHHHHc--CCee-ccCHHHHhccCCEEEEec-----CHHHHH
Confidence 466676 23554333333332 457788887 5443 333311 1221 112222234589988843 444556
Q ss_pred HHHHHHHHhccc
Q 022515 209 KILKKCKEAITS 220 (296)
Q Consensus 209 ~iL~~~~~aL~p 220 (296)
.+++++...++|
T Consensus 73 ~vl~~l~~~l~~ 84 (437)
T PRK08655 73 DVIKEVAPHVKE 84 (437)
T ss_pred HHHHHHHhhCCC
Confidence 778888888887
No 458
>PRK13699 putative methylase; Provisional
Probab=43.88 E-value=37 Score=28.58 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=33.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS 171 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 171 (296)
.++..|||-=||+|..+.+..+. +-+++++|+ ++-++.+.+
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~ 203 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQ 203 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHH
Confidence 46679999999999999876665 668999999 777776653
No 459
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=43.71 E-value=22 Score=21.64 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHh
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTW 74 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~ 74 (296)
.+.|..|+|+.+|++...+++.....
T Consensus 19 ~~~t~~eIa~~lg~s~~~V~~~~~~a 44 (50)
T PF04545_consen 19 EGLTLEEIAERLGISRSTVRRILKRA 44 (50)
T ss_dssp ST-SHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCcHHHHHHHHHHH
Confidence 57999999999999998887644433
No 460
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=43.47 E-value=84 Score=27.42 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=71.5
Q ss_pred EEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCCeeEEeccCCC-C---CC-ccceeEehhhhccCC--
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A---IS-PADAVLLKWILHDWN-- 203 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~---~p-~~D~v~~~~vlh~~~-- 203 (296)
+++|+=||.|.+...+.+.. . .+..+|+ +..++.-+..-. ....+|+.+ . +| +.|+++...-...|+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~fS~a 77 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPKDVDLLIGGPPCQGFSIA 77 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHHT-SEEEEE---TTTSTT
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--ccccccccccccccccccceEEEeccCCceEecc
Confidence 68999999999999998884 4 3566788 666655443112 778889887 2 56 499998876655543
Q ss_pred -------chH--HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh
Q 022515 204 -------DEE--CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY 274 (296)
Q Consensus 204 -------d~~--~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~ 274 (296)
|+. ...-+-++.+.++| +++++|.+..=... ......+.+.+.|++
T Consensus 78 g~~~~~~d~r~~L~~~~~~~v~~~~P-----k~~~~ENV~~l~~~--------------------~~~~~~~~i~~~l~~ 132 (335)
T PF00145_consen 78 GKRKGFDDPRNSLFFEFLRIVKELKP-----KYFLLENVPGLLSS--------------------KNGEVFKEILEELEE 132 (335)
T ss_dssp STHHCCCCHTTSHHHHHHHHHHHHS------SEEEEEEEGGGGTG--------------------GGHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhccc-----eEEEecccceeecc--------------------ccccccccccccccc
Confidence 222 12122334455566 67888876431100 001245788889999
Q ss_pred cCCceeE
Q 022515 275 AGFSDYK 281 (296)
Q Consensus 275 aGf~~~~ 281 (296)
.||.+..
T Consensus 133 lGY~v~~ 139 (335)
T PF00145_consen 133 LGYNVQW 139 (335)
T ss_dssp TTEEEEE
T ss_pred cceeehh
Confidence 9987643
No 461
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=43.29 E-value=22 Score=25.72 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHh
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTW 74 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~ 74 (296)
.+.|+++||+.++++++.+.|.+.+.
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~f~~~ 45 (107)
T PRK10219 20 QPLNIDVVAKKSGYSKWYLQRMFRTV 45 (107)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57999999999999999998855544
No 462
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=43.09 E-value=39 Score=25.92 Aligned_cols=45 Identities=9% Similarity=0.160 Sum_probs=32.3
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+||++.+.++.+ .. +.+.+..+||+.+|+++..+++.+...-+.|
T Consensus 9 YAl~~~i~la~~---~~-g~~~s~~~ia~~~~is~~~vrk~l~~L~~~G 53 (141)
T PRK11014 9 YGLRALIYMASL---PE-GRMTSISEVTEVYGVSRNHMVKIINQLSRAG 53 (141)
T ss_pred HHHHHHHHHhcC---CC-CCccCHHHHHHHHCcCHHHHHHHHHHHHhCC
Confidence 456666665543 22 2578999999999999999988776655443
No 463
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=42.83 E-value=7.4 Score=34.11 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=64.3
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--ccceeEehhhhcc
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--PADAVLLKWILHD 201 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~ 201 (296)
+..|+|+=.|.|.++.-++=......+..+|. |..++..++ ..+|...+.||-..+-| .+|=|.+..+
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLl--- 271 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLL--- 271 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeeccc---
Confidence 47899999999999984443334557899999 988876655 46777778888777544 3776655432
Q ss_pred CCchHHHHHHHHHHHhcccCCCCc-EEEEEeeeeCCC
Q 022515 202 WNDEECVKILKKCKEAITSDGKKG-KVIIIDMIRENK 237 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG-~lli~e~~~~~~ 237 (296)
|..+ +=.--+.++|+| + || .+-|.|.+-.++
T Consensus 272 -PSse--~~W~~A~k~Lk~-e-ggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 272 -PSSE--QGWPTAIKALKP-E-GGSILHIHENVKDSD 303 (351)
T ss_pred -cccc--cchHHHHHHhhh-c-CCcEEEEeccccccc
Confidence 2111 223345677888 2 66 555666554443
No 464
>PRK10458 DNA cytosine methylase; Provisional
Probab=42.48 E-value=1.9e+02 Score=27.34 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=25.9
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhh
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVN 167 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~ 167 (296)
..+++|+=||.|.+...+-.. +.+ +..+|+ +..++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~ 124 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVR 124 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHH
Confidence 468999999999999998776 344 455677 55443
No 465
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=42.39 E-value=12 Score=23.78 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=29.5
Q ss_pred HHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh
Q 022515 35 AIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ 76 (296)
Q Consensus 35 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~ 76 (296)
.-|..++..+.. +.+..|+|+.+++++..+..++....+
T Consensus 6 ~~E~~vl~~l~~---G~~~~eIA~~l~is~~tV~~~~~~i~~ 44 (58)
T PF00196_consen 6 ERELEVLRLLAQ---GMSNKEIAEELGISEKTVKSHRRRIMK 44 (58)
T ss_dssp HHHHHHHHHHHT---TS-HHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---cCCcchhHHhcCcchhhHHHHHHHHHH
Confidence 356677888874 699999999999999888776655543
No 466
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=42.38 E-value=24 Score=27.61 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHhhhc
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTWFQN 77 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~~~~ 77 (296)
++.|+++||++.++++..+++-+...-+.
T Consensus 24 ~~~s~~~IA~~~~is~~~L~kil~~L~ka 52 (150)
T COG1959 24 GPVSSAEIAERQGISPSYLEKILSKLRKA 52 (150)
T ss_pred CcccHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence 38999999999999999999977666543
No 467
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=42.36 E-value=2.3e+02 Score=25.04 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=38.6
Q ss_pred EEEEecCCchHHHHHHHHHC---CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC---C----CccceeE
Q 022515 133 SLVDVGGGIGTAAKAIAKAF---PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA---I----SPADAVL 194 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~---~----p~~D~v~ 194 (296)
+|| |=||+|..+.+|++.+ .+.+++++|. +....... ...+++++.+|+..+ . .++|+|+
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLV-NHPRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhc-cCCCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 455 5678888888887765 3468888887 43222211 235699999999732 1 2478776
No 468
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=42.25 E-value=1.8e+02 Score=25.92 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=52.0
Q ss_pred CCEEEEecC-Cc-hHHHHHHHHHCCCC-------eEEeccchhHhhccCC-----------CCCCeeEEeccCCCCCCcc
Q 022515 131 LNSLVDVGG-GI-GTAAKAIAKAFPKL-------ECTCFDLPHVVNGLDS-----------DLANLKYVGGDMFEAISPA 190 (296)
Q Consensus 131 ~~~vLDvGg-G~-G~~~~~l~~~~p~~-------~~~~~D~~~~~~~a~~-----------~~~ri~~~~~D~~~~~p~~ 190 (296)
+.+|.=||+ |. |......+. ..++ ..+++|+.+..+.++. ...++.+..+| .++..++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~da 79 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIA-SGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDP-NVAFKDA 79 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHH-hccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCc-HHHhCCC
Confidence 357888887 65 544333222 2122 6888898544432221 11234444332 3345678
Q ss_pred ceeEehhhhccCCc-------hHHHHHHHHHHHhcccCC-CCcEEEEEe
Q 022515 191 DAVLLKWILHDWND-------EECVKILKKCKEAITSDG-KKGKVIIID 231 (296)
Q Consensus 191 D~v~~~~vlh~~~d-------~~~~~iL~~~~~aL~p~~-~gG~lli~e 231 (296)
|+|++..-.-.-+. ....++++++...++... |.+.++++.
T Consensus 80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 98887554322222 123567777777775432 267777765
No 469
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=42.04 E-value=93 Score=27.24 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=55.0
Q ss_pred cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCC-eeEEeccCCC----CC--CccceeEeh
Q 022515 128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LAN-LKYVGGDMFE----AI--SPADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~r-i~~~~~D~~~----~~--p~~D~v~~~ 196 (296)
..++.+||=.| ||.|..+..+++.. +.++++.+. ++-.+.+++. .+. +.....+... .. .++|+++-.
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 55678898888 67899999999876 667777765 5555555431 211 1111111111 11 147777642
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
... ..+....+.+++ +|+++.+..
T Consensus 215 -----~G~----~~~~~~~~~l~~---~G~iv~~G~ 238 (325)
T TIGR02825 215 -----VGG----EFSNTVIGQMKK---FGRIAICGA 238 (325)
T ss_pred -----CCH----HHHHHHHHHhCc---CcEEEEecc
Confidence 122 235677888999 999997754
No 470
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=42.01 E-value=1.8e+02 Score=25.87 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=37.8
Q ss_pred CEEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCC---------CCCCeeEEe-ccCCCCCCccceeEeh
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS---------DLANLKYVG-GDMFEAISPADAVLLK 196 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---------~~~ri~~~~-~D~~~~~p~~D~v~~~ 196 (296)
.+|.=||+|+=..+.+..-..+++ .++++|+ ++.. .++. .....++.. +|+ +...++|+|+..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~-~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t 81 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIP-QGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT 81 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchh-hHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence 589999998844444444444554 7899998 6533 2111 122334443 565 456679999883
No 471
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=41.99 E-value=22 Score=26.75 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHhh
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTWF 75 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~~ 75 (296)
.+.|+++||+.+|++++.+.|.+++++
T Consensus 24 ~~~sl~~lA~~~g~S~~~l~r~Fk~~~ 50 (127)
T PRK11511 24 SPLSLEKVSERSGYSKWHLQRMFKKET 50 (127)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 479999999999999999988555443
No 472
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=41.95 E-value=2.2e+02 Score=24.31 Aligned_cols=93 Identities=19% Similarity=0.116 Sum_probs=52.2
Q ss_pred CCCEEEEecCC-chHHHHHHHHHCCCCe-EEeccc-hhHhhccCCCCCCeeEEeccCCC---C--C-CccceeEehhhhc
Q 022515 130 GLNSLVDVGGG-IGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDSDLANLKYVGGDMFE---A--I-SPADAVLLKWILH 200 (296)
Q Consensus 130 ~~~~vLDvGgG-~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~---~--~-p~~D~v~~~~vlh 200 (296)
++.+||=+|+| .|..+..+++.. +.+ ++++|. ++-.+.+++......+...+..+ . . .++|+++-.-
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~--- 195 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFS--- 195 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECC---
Confidence 56788888753 556667777766 554 777786 66555555311111110111100 0 1 1478776421
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
..+ ..++.+.+.++| +|+++++-...
T Consensus 196 --G~~---~~~~~~~~~l~~---~G~iv~~G~~~ 221 (280)
T TIGR03366 196 --GAT---AAVRACLESLDV---GGTAVLAGSVF 221 (280)
T ss_pred --CCh---HHHHHHHHHhcC---CCEEEEeccCC
Confidence 111 357777888999 89998887543
No 473
>PF13518 HTH_28: Helix-turn-helix domain
Probab=41.90 E-value=22 Score=21.64 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=21.2
Q ss_pred CCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 51 MTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 51 ~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.|..++|+.+|+++..+.+.+..|-..|
T Consensus 13 ~s~~~~a~~~gis~~tv~~w~~~y~~~G 40 (52)
T PF13518_consen 13 ESVREIAREFGISRSTVYRWIKRYREGG 40 (52)
T ss_pred CCHHHHHHHHCCCHhHHHHHHHHHHhcC
Confidence 4999999999998888766555554444
No 474
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=41.85 E-value=20 Score=22.99 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=10.5
Q ss_pred HHHHhcCCceeEEEE
Q 022515 270 KLFTYAGFSDYKIIP 284 (296)
Q Consensus 270 ~ll~~aGf~~~~~~~ 284 (296)
+||+++||..-.-..
T Consensus 31 ~WL~~aGF~~G~~v~ 45 (57)
T PF08845_consen 31 KWLEEAGFTIGDPVK 45 (57)
T ss_pred hhhHHhCCCCCCEEE
Confidence 579999997644333
No 475
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=41.49 E-value=59 Score=26.24 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=32.9
Q ss_pred HHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 214 CKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 214 ~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
..+++++ |-+++|+|.+.... . |.....++++++|++++.+..+
T Consensus 109 ~~~~l~~---G~rVlIVDDllaTG-----------------------g--T~~a~~~Ll~~~ga~vvg~~~~ 152 (179)
T COG0503 109 HKDALKP---GDRVLIVDDLLATG-----------------------G--TALALIELLEQAGAEVVGAAFV 152 (179)
T ss_pred EhhhCCC---CCEEEEEecchhcC-----------------------h--HHHHHHHHHHHCCCEEEEEEEE
Confidence 3445778 89999999765432 1 6778889999999998877654
No 476
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=41.46 E-value=35 Score=26.76 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 29 SMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 29 ~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
-+|+++.+.|-.. . ++++|+.+||++.++++..+++-+....+.|
T Consensus 8 ~YAlr~L~~LA~~---~--~~~~s~~eIA~~~~is~~~L~kIl~~L~~aG 52 (153)
T PRK11920 8 NYAIRMLMYCAAN---D--GKLSRIPEIARAYGVSELFLFKILQPLVEAG 52 (153)
T ss_pred hHHHHHHHHHHhC---C--CCcCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3466666655422 1 2578999999999999999988776665543
No 477
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=41.36 E-value=24 Score=28.03 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=51.4
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccch-h-HhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHH
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLP-H-VVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECV 208 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~-~-~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~ 208 (296)
..+|.=||.|+=..+.++.-+-.++++++-..+ . ..+.|+ .+..+ ..++.+....+|+|++- .||+...
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~--~~Gf~--v~~~~eAv~~aDvV~~L-----~PD~~q~ 74 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK--ADGFE--VMSVAEAVKKADVVMLL-----LPDEVQP 74 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH--HTT-E--CCEHHHHHHC-SEEEE------S-HHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH--HCCCe--eccHHHHHhhCCEEEEe-----CChHHHH
Confidence 468999998877777666666567888766653 2 555554 22222 22222223358998873 5888777
Q ss_pred HHH-HHHHHhcccCCCCcEEEEEe
Q 022515 209 KIL-KKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 209 ~iL-~~~~~aL~p~~~gG~lli~e 231 (296)
++. +.+...|+| |-.|++..
T Consensus 75 ~vy~~~I~p~l~~---G~~L~fah 95 (165)
T PF07991_consen 75 EVYEEEIAPNLKP---GATLVFAH 95 (165)
T ss_dssp HHHHHHHHHHS-T---T-EEEESS
T ss_pred HHHHHHHHhhCCC---CCEEEeCC
Confidence 887 889999999 55554444
No 478
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=41.28 E-value=26 Score=26.40 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.+|++...+.. .+. +++.|..+||+.+++++..+++.+....+.|
T Consensus 9 ~al~~l~~la~---~~~-~~~~s~~eia~~~~i~~~~v~~il~~L~~~g 53 (132)
T TIGR00738 9 YALRALLDLAL---NPD-EGPVSVKEIAERQGISRSYLEKILRTLRRAG 53 (132)
T ss_pred HHHHHHHHHHh---CCC-CCcCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45555555542 122 2589999999999999999988776665543
No 479
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=41.24 E-value=30 Score=24.19 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHC--CC---CeEEec-cc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHHHHH
Q 022515 140 GIGTAAKAIAKAF--PK---LECTCF-DL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILK 212 (296)
Q Consensus 140 G~G~~~~~l~~~~--p~---~~~~~~-D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~ 212 (296)
|.|.++..+++.+ .+ .+++.. +. ++-.+...+ .-.+.+...+..+-....|+|++. .++.....+++
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~advvila-----v~p~~~~~v~~ 79 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAK-EYGVQATADDNEEAAQEADVVILA-----VKPQQLPEVLS 79 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHH-HCTTEEESEEHHHHHHHTSEEEE------S-GGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHH-hhccccccCChHHhhccCCEEEEE-----ECHHHHHHHHH
Confidence 4445555554432 12 466634 76 665554432 111333332333223358999984 46777788898
Q ss_pred HHHHhcccCCCCcEEEEE
Q 022515 213 KCKEAITSDGKKGKVIII 230 (296)
Q Consensus 213 ~~~~aL~p~~~gG~lli~ 230 (296)
.+ ..+.+ ++++|.
T Consensus 80 ~i-~~~~~----~~~vis 92 (96)
T PF03807_consen 80 EI-PHLLK----GKLVIS 92 (96)
T ss_dssp HH-HHHHT----TSEEEE
T ss_pred HH-hhccC----CCEEEE
Confidence 88 55665 566553
No 480
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.15 E-value=1.3e+02 Score=26.58 Aligned_cols=97 Identities=25% Similarity=0.244 Sum_probs=53.0
Q ss_pred EEEecCCc-hHHHHHHHHHCCC-CeEEeccc-hhHh-----hccCC---C-CCCeeEEeccCCCCCCccceeEehhhhcc
Q 022515 134 LVDVGGGI-GTAAKAIAKAFPK-LECTCFDL-PHVV-----NGLDS---D-LANLKYVGGDMFEAISPADAVLLKWILHD 201 (296)
Q Consensus 134 vLDvGgG~-G~~~~~l~~~~p~-~~~~~~D~-~~~~-----~~a~~---~-~~ri~~~~~D~~~~~p~~D~v~~~~vlh~ 201 (296)
|.=||+|. |......+-..+- -..+++|+ ++.. +.... . ..++.+..+|+ ++..++|+|++..-.-.
T Consensus 2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y-~~~~~aDivvitaG~~~ 80 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDY-DDCADADIIVITAGPSI 80 (307)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCH-HHhCCCCEEEECCCCCC
Confidence 45578766 5555443333333 26888897 3322 11111 1 12466666663 34567899888544321
Q ss_pred CC--c-------hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 202 WN--D-------EECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 202 ~~--d-------~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
-| + ....++++.+.+.++...|.|.++++.
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 12 1 235678888887776533467776654
No 481
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=41.06 E-value=19 Score=29.62 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=31.6
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++.++..|.+. ++.+..|||+.+++++..+.+.+....+.|
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~is~stv~r~L~~Le~~G 185 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGKSLSTISRHLRELEKKG 185 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44566666653 578999999999999999988887765543
No 482
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.03 E-value=1.4e+02 Score=25.86 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=52.1
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------CC------------CCeeEEeccCCCCCC
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------DL------------ANLKYVGGDMFEAIS 188 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~------------~ri~~~~~D~~~~~p 188 (296)
.+|.=||+|.=...++..-...+.+++++|. ++.++.+.+ .. .++++. .|+ +...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~~ 82 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-EDLA 82 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HHhc
Confidence 5688888886544444333334678999998 776655321 01 234433 233 3344
Q ss_pred ccceeEehhhhccCCc-hH-HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 189 PADAVLLKWILHDWND-EE-CVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d-~~-~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
++|+|+..- ++ .+ ...+++++...++| +.+++..
T Consensus 83 ~aD~Vieav-----pe~~~~k~~~~~~l~~~~~~----~~ii~s~ 118 (292)
T PRK07530 83 DCDLVIEAA-----TEDETVKRKIFAQLCPVLKP----EAILATN 118 (292)
T ss_pred CCCEEEEcC-----cCCHHHHHHHHHHHHhhCCC----CcEEEEc
Confidence 688888742 32 22 34678889888888 5566544
No 483
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=40.58 E-value=1.7e+02 Score=26.89 Aligned_cols=98 Identities=16% Similarity=0.128 Sum_probs=49.9
Q ss_pred EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCC------------------CCCeeEEeccCCCCCCcccee
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD------------------LANLKYVGGDMFEAISPADAV 193 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~ri~~~~~D~~~~~p~~D~v 193 (296)
+|.=||+|.=....+..-...+.+++++|. +..++...+. .+++++. .|..+...++|+|
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~~~~advv 80 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDAIRDADVI 80 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHHHhhCCEE
Confidence 455677775433333332234668999998 7666544320 1223322 1221113357888
Q ss_pred Eehhhhc-----cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 194 LLKWILH-----DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 194 ~~~~vlh-----~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
++.---. ..+-......++.+.+.+++ |.+++.....+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~----g~lvi~~STv~ 123 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRK----GATVVLESTVP 123 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCC----CCEEEEeCcCC
Confidence 7642110 00112345667778888887 56666554433
No 484
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=40.57 E-value=34 Score=26.61 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
|+.|++|||-+.|+..+++...|.-....|
T Consensus 5 Ga~T~eELA~~FGvttRkvaStLa~~ta~G 34 (155)
T PF07789_consen 5 GAKTAEELAGKFGVTTRKVASTLAMVTATG 34 (155)
T ss_pred CcccHHHHHHHhCcchhhhHHHHHHHHhcc
Confidence 899999999999999998876565544444
No 485
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=40.56 E-value=2.5e+02 Score=25.79 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=17.1
Q ss_pred CCchHHHHH---HHHHCCCCeEEeccc
Q 022515 139 GGIGTAAKA---IAKAFPKLECTCFDL 162 (296)
Q Consensus 139 gG~G~~~~~---l~~~~p~~~~~~~D~ 162 (296)
||||.+... +.+.+|..++.+-|.
T Consensus 102 GGTGAL~~~A~fl~~~~~~~~vwis~P 128 (396)
T COG1448 102 GGTGALRVAADFLARFFPDATVWISDP 128 (396)
T ss_pred CcchHHHHHHHHHHHhCCCceEEeCCC
Confidence 688876543 455668888888886
No 486
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=40.53 E-value=57 Score=29.25 Aligned_cols=86 Identities=12% Similarity=0.058 Sum_probs=47.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccch--hHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHH
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLP--HVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEEC 207 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~--~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~ 207 (296)
.+.+|.=||+|.=..+.+..-+-.+.++++.+.+ ...+.+++ ..+. ..|..+....+|+|++. .|+...
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~--~G~~--~~s~~eaa~~ADVVvLa-----VPd~~~ 86 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA--DGFE--VLTVAEAAKWADVIMIL-----LPDEVQ 86 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH--CCCe--eCCHHHHHhcCCEEEEc-----CCHHHH
Confidence 3467888888764333322222235677665542 23333321 1222 22322223458999883 466666
Q ss_pred HHHH-HHHHHhcccCCCCcEE
Q 022515 208 VKIL-KKCKEAITSDGKKGKV 227 (296)
Q Consensus 208 ~~iL-~~~~~aL~p~~~gG~l 227 (296)
..++ +.+...|+| |..|
T Consensus 87 ~~V~~~~I~~~Lk~---g~iL 104 (330)
T PRK05479 87 AEVYEEEIEPNLKE---GAAL 104 (330)
T ss_pred HHHHHHHHHhcCCC---CCEE
Confidence 7777 778888998 5444
No 487
>PRK13558 bacterio-opsin activator; Provisional
Probab=40.50 E-value=32 Score=33.76 Aligned_cols=45 Identities=20% Similarity=0.091 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHh
Q 022515 26 FINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTW 74 (296)
Q Consensus 26 ~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~ 74 (296)
-..-.+|.+|.+.|.|+.= ...|.+|||+.+|++..-+..+|+..
T Consensus 610 ~~q~e~l~~a~~~gyf~~p----r~~~~~e~a~~l~is~~t~~~~lr~a 654 (665)
T PRK13558 610 DRQLTALQKAYVSGYFEWP----RRVEGEELAESMGISRSTFHQHLRAA 654 (665)
T ss_pred HHHHHHHHHHHHcCCCCCC----ccCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4466799999999999954 46899999999999998877766544
No 488
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=40.27 E-value=1.6e+02 Score=22.30 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=49.6
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT 269 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~ 269 (296)
.|+|++-+-= .|.+....|-.+.+.|.. +|.|.++.+-.... ..-++.++.
T Consensus 46 vD~vllWwR~---~DgDL~D~LvDa~~~L~d---~G~IWvltPK~gr~-----------------------g~V~~~~I~ 96 (127)
T PF11253_consen 46 VDVVLLWWRD---DDGDLVDALVDARTNLAD---DGVIWVLTPKAGRP-----------------------GHVEPSDIR 96 (127)
T ss_pred ccEEEEEEEC---CcchHHHHHHHHHhhhcC---CCEEEEEccCCCCC-----------------------CCCCHHHHH
Confidence 6888774321 355667788888899998 89999877432111 011788999
Q ss_pred HHHHhcCCceeEEEEcCC
Q 022515 270 KLFTYAGFSDYKIIPILG 287 (296)
Q Consensus 270 ~ll~~aGf~~~~~~~~~~ 287 (296)
+....||+...+...+..
T Consensus 97 eaA~taGL~~t~~~~v~~ 114 (127)
T PF11253_consen 97 EAAPTAGLVQTKSCAVGD 114 (127)
T ss_pred HHHhhcCCeeeeeeccCC
Confidence 999999999988887754
No 489
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=40.10 E-value=2.1e+02 Score=25.45 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=54.3
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec-----cCCCC---C---Cccc---
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG-----DMFEA---I---SPAD--- 191 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~-----D~~~~---~---p~~D--- 191 (296)
..++.+||=.|+|. |..+..+++.. +.+++++|. ++-.+.+++......+... |+.+. . .++|
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~ 242 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCc
Confidence 45678899998765 77778888877 568888887 6666666542111111111 11110 0 1244
Q ss_pred -eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 192 -AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 192 -~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
+++-. + .. ...++.+.+.+++ ||+++++...
T Consensus 243 d~v~d~-~----g~---~~~~~~~~~~l~~---~G~iv~~G~~ 274 (349)
T TIGR03201 243 WKIFEC-S----GS---KPGQESALSLLSH---GGTLVVVGYT 274 (349)
T ss_pred CEEEEC-C----CC---hHHHHHHHHHHhc---CCeEEEECcC
Confidence 33321 1 11 1346667778998 9999888754
No 490
>PRK07680 late competence protein ComER; Validated
Probab=39.97 E-value=1e+02 Score=26.57 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=44.0
Q ss_pred EEEEecCCc--hHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHH
Q 022515 133 SLVDVGGGI--GTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEEC 207 (296)
Q Consensus 133 ~vLDvGgG~--G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~ 207 (296)
+|.=||+|. +.++..|.+.. +...+++.|. ++-.+...+....+... .|..+-..++|+|++.- ++...
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~aDiVilav-----~p~~~ 75 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVA-KTIEEVISQSDLIFICV-----KPLDI 75 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEE-CCHHHHHHhCCEEEEec-----CHHHH
Confidence 456678765 33444444442 1125777887 54443332111123322 22222133589887743 56667
Q ss_pred HHHHHHHHHhccc
Q 022515 208 VKILKKCKEAITS 220 (296)
Q Consensus 208 ~~iL~~~~~aL~p 220 (296)
..+++.+...+++
T Consensus 76 ~~vl~~l~~~l~~ 88 (273)
T PRK07680 76 YPLLQKLAPHLTD 88 (273)
T ss_pred HHHHHHHHhhcCC
Confidence 7888888888876
No 491
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=39.70 E-value=1.3e+02 Score=27.98 Aligned_cols=100 Identities=13% Similarity=0.071 Sum_probs=57.5
Q ss_pred CCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc--hhHhhccCCCCCCeeEEeccCCC-CCCccceeEehhh-hccCCc
Q 022515 130 GLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL--PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLKWI-LHDWND 204 (296)
Q Consensus 130 ~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~~v-lh~~~d 204 (296)
...++|=||.| .|.+...-+....--++++... ....+.|++.. ..++..+=.. -+..+|+|+++-. -|..=.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~--~~~~~l~el~~~l~~~DvVissTsa~~~ii~ 254 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG--AEAVALEELLEALAEADVVISSTSAPHPIIT 254 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC--CeeecHHHHHHhhhhCCEEEEecCCCccccC
Confidence 46789999999 8887766665554456777765 33444444222 2333222212 2457999998642 222111
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCC
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGD 240 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~ 240 (296)
-..+.+++++ .-+++++|...|-+-.+
T Consensus 255 ------~~~ve~a~~~---r~~~livDiavPRdie~ 281 (414)
T COG0373 255 ------REMVERALKI---RKRLLIVDIAVPRDVEP 281 (414)
T ss_pred ------HHHHHHHHhc---ccCeEEEEecCCCCCCc
Confidence 2245555665 22389999888765543
No 492
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=39.65 E-value=18 Score=25.67 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=29.1
Q ss_pred HHHHcCcchhcccC-CCCCCHHHHHHHcCCCCcchhh
Q 022515 34 CAIQLGIPDIISKH-GKPMTLNELVSALTINPSKSRC 69 (296)
Q Consensus 34 ~a~~l~lf~~L~~~-~~~~t~~eLA~~~~~~~~~l~~ 69 (296)
.=++..|+..|... +.+.++.|||+.+++++..+..
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~~~snV~G 44 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGSDYSNVLG 44 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCCCHHHHHH
Confidence 44677788888764 4689999999999999998854
No 493
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=39.58 E-value=2.7e+02 Score=24.68 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=39.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhcc-CC--CCCCeeEEeccCCCC------CCccceeEeh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGL-DS--DLANLKYVGGDMFEA------ISPADAVLLK 196 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a-~~--~~~ri~~~~~D~~~~------~p~~D~v~~~ 196 (296)
+...+||=.| |+|....++++.+ .+.++++++. +.-.... .. ...+++++.+|+.++ +.+.|.|+-.
T Consensus 8 ~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 86 (353)
T PLN02896 8 SATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHV 86 (353)
T ss_pred cCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence 3456777665 5677777666654 3557776665 3222111 11 235788999998872 1246766554
Q ss_pred h
Q 022515 197 W 197 (296)
Q Consensus 197 ~ 197 (296)
-
T Consensus 87 A 87 (353)
T PLN02896 87 A 87 (353)
T ss_pred C
Confidence 4
No 494
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=39.54 E-value=90 Score=28.38 Aligned_cols=119 Identities=11% Similarity=0.081 Sum_probs=75.1
Q ss_pred HHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeE
Q 022515 105 FNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKY 178 (296)
Q Consensus 105 f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~ 178 (296)
|+..|.-. +.+.-.++..+. .....+|+|-=+|+|.-++.++..-+..+++.-|+ |..++.+++ .......
T Consensus 30 YNP~m~~N-RDlsV~~l~~~~--~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v 106 (380)
T COG1867 30 YNPAMEFN-RDLSVLVLKAFG--KLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEV 106 (380)
T ss_pred eCchhhhc-cchhHHHHHHhh--ccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccccee
Confidence 44445433 222233444444 22268999999999999999999998889999999 988887765 1334444
Q ss_pred EeccCCC---CC-CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 179 VGGDMFE---AI-SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 179 ~~~D~~~---~~-p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
+..|... .. ..||+|=+- |-.....++..+.++.+. ||.|.++-+-..
T Consensus 107 ~n~DAN~lm~~~~~~fd~IDiD------PFGSPaPFlDaA~~s~~~---~G~l~vTATD~a 158 (380)
T COG1867 107 INKDANALLHELHRAFDVIDID------PFGSPAPFLDAALRSVRR---GGLLCVTATDTA 158 (380)
T ss_pred ecchHHHHHHhcCCCccEEecC------CCCCCchHHHHHHHHhhc---CCEEEEEecccc
Confidence 4455433 11 235655331 111234678888888887 788888765433
No 495
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=39.35 E-value=18 Score=23.48 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHcCCCCcchhh
Q 022515 48 GKPMTLNELVSALTINPSKSRC 69 (296)
Q Consensus 48 ~~~~t~~eLA~~~~~~~~~l~~ 69 (296)
+|.++..+||+.+|+++.-++.
T Consensus 20 ~g~i~lkdIA~~Lgvs~~tIr~ 41 (60)
T PF10668_consen 20 NGKIKLKDIAEKLGVSESTIRK 41 (60)
T ss_pred CCCccHHHHHHHHCCCHHHHHH
Confidence 4789999999999999877643
No 496
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=38.88 E-value=46 Score=30.30 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=27.7
Q ss_pred CCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhcc
Q 022515 130 GLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGL 169 (296)
Q Consensus 130 ~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 169 (296)
++.+|+=+|+| .|..+...++.. +.+++++|. ++-.+.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQL 206 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHH
Confidence 34679999987 567777777766 568999998 6555444
No 497
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=38.86 E-value=11 Score=22.93 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=20.5
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ 76 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~ 76 (296)
++.+...+.+ ..|..++|+.+|+++.-+.+-+..|-.
T Consensus 7 R~~ii~l~~~---G~s~~~ia~~lgvs~~Tv~~w~kr~~~ 43 (50)
T PF13384_consen 7 RAQIIRLLRE---GWSIREIAKRLGVSRSTVYRWIKRYRE 43 (50)
T ss_dssp ---HHHHHHH---T--HHHHHHHHTS-HHHHHHHHT----
T ss_pred HHHHHHHHHC---CCCHHHHHHHHCcCHHHHHHHHHHccc
Confidence 3445555554 689999999999999888765544443
No 498
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.84 E-value=2.4e+02 Score=23.84 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=45.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCC--CCeEEeccc--hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFP--KLECTCFDL--PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWND 204 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p--~~~~~~~D~--~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d 204 (296)
+....||-.||..|....+|++.|- +.++...-. +.|.+.+. ..++.....|.. .+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~--~~gl~~~kLDV~------------------~~ 64 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI--QFGLKPYKLDVS------------------KP 64 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH--hhCCeeEEeccC------------------Ch
Confidence 4567899999999999999998773 334333222 34443332 222343433332 34
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
+...++...++.- | .|+|=+.
T Consensus 65 ~~V~~v~~evr~~--~---~Gkld~L 85 (289)
T KOG1209|consen 65 EEVVTVSGEVRAN--P---DGKLDLL 85 (289)
T ss_pred HHHHHHHHHHhhC--C---CCceEEE
Confidence 5567778877665 4 5765433
No 499
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=38.73 E-value=97 Score=27.27 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=46.9
Q ss_pred ecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhh-ccCC-------CCCCeeEEeccCCCCCCccceeEehhhhccCCc-
Q 022515 137 VGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVN-GLDS-------DLANLKYVGGDMFEAISPADAVLLKWILHDWND- 204 (296)
Q Consensus 137 vGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~-~a~~-------~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d- 204 (296)
||+|. |......+...+-. +..++|+ ++.++ .+.. ...++.+..+| .+...++|+|++..-.---+.
T Consensus 2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD-YSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC-HHHHCCCCEEEECCCCCCCCCC
Confidence 56655 55554444444332 5888887 33221 1111 22345555444 234557899888543321121
Q ss_pred --h----HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 205 --E----ECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 205 --~----~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
. ....+++++.+.++...|.|+++++.
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 1 13455665555554322378877765
No 500
>PLN02688 pyrroline-5-carboxylate reductase
Probab=38.66 E-value=1.3e+02 Score=25.57 Aligned_cols=85 Identities=15% Similarity=0.245 Sum_probs=47.2
Q ss_pred EEEEecCCc--hHHHHHHHHHC--CCCeEEec-cc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchH
Q 022515 133 SLVDVGGGI--GTAAKAIAKAF--PKLECTCF-DL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEE 206 (296)
Q Consensus 133 ~vLDvGgG~--G~~~~~l~~~~--p~~~~~~~-D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~ 206 (296)
+|.=||+|. +.++..|++.. +..++++. |. ++..+.+.+. .+... .+..+-..+.|+|++.- +++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~--g~~~~-~~~~e~~~~aDvVil~v-----~~~~ 73 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL--GVKTA-ASNTEVVKSSDVIILAV-----KPQV 73 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc--CCEEe-CChHHHHhcCCEEEEEE-----CcHH
Confidence 456677775 44555555542 23367777 77 5554443311 23221 12111123579888743 5666
Q ss_pred HHHHHHHHHHhcccCCCCcEEEE
Q 022515 207 CVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 207 ~~~iL~~~~~aL~p~~~gG~lli 229 (296)
...+++.+...+++ |.++|
T Consensus 74 ~~~vl~~l~~~~~~----~~~iI 92 (266)
T PLN02688 74 VKDVLTELRPLLSK----DKLLV 92 (266)
T ss_pred HHHHHHHHHhhcCC----CCEEE
Confidence 77888888877876 56555
Done!