Query 022515
Match_columns 296
No_of_seqs 227 out of 2277
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 2.2E-51 7.5E-56 368.7 27.0 274 14-296 7-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 2.6E-45 8.8E-50 330.5 28.5 282 9-296 14-364 (364)
3 3lst_A CALO1 methyltransferase 100.0 9.3E-45 3.2E-49 325.3 26.8 276 9-296 16-347 (348)
4 3reo_A (ISO)eugenol O-methyltr 100.0 1.1E-43 3.9E-48 320.3 27.8 280 11-296 17-366 (368)
5 3gwz_A MMCR; methyltransferase 100.0 8.2E-44 2.8E-48 321.5 25.5 275 9-296 32-368 (369)
6 3i53_A O-methyltransferase; CO 100.0 1.4E-43 4.8E-48 315.7 19.3 265 16-296 6-331 (332)
7 1fp2_A Isoflavone O-methyltran 100.0 1.9E-42 6.6E-47 310.7 25.3 291 2-296 3-352 (352)
8 2ip2_A Probable phenazine-spec 100.0 3.1E-42 1.1E-46 307.2 24.8 269 14-296 7-333 (334)
9 1zg3_A Isoflavanone 4'-O-methy 100.0 2.8E-41 9.5E-46 303.8 24.2 289 6-296 1-358 (358)
10 3dp7_A SAM-dependent methyltra 100.0 2.3E-41 7.7E-46 304.9 22.6 282 6-296 6-354 (363)
11 1fp1_D Isoliquiritigenin 2'-O- 100.0 3.6E-40 1.2E-44 298.0 25.6 282 9-296 16-372 (372)
12 1tw3_A COMT, carminomycin 4-O- 100.0 1.8E-38 6.1E-43 285.7 23.1 270 15-296 19-355 (360)
13 1qzz_A RDMB, aclacinomycin-10- 100.0 7.5E-39 2.6E-43 289.5 20.7 275 11-296 12-355 (374)
14 3mcz_A O-methyltransferase; ad 100.0 4.9E-38 1.7E-42 282.0 24.5 270 13-296 22-348 (352)
15 1x19_A CRTF-related protein; m 100.0 4.6E-37 1.6E-41 276.4 25.5 274 8-296 23-358 (359)
16 2r3s_A Uncharacterized protein 100.0 4.1E-37 1.4E-41 274.0 23.9 271 17-295 8-333 (335)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 3.8E-22 1.3E-26 171.2 14.8 157 128-292 68-253 (261)
18 3dtn_A Putative methyltransfer 99.9 1.6E-20 5.3E-25 158.3 16.4 172 119-295 34-224 (234)
19 3dh0_A SAM dependent methyltra 99.8 4.2E-19 1.4E-23 147.9 15.2 156 118-296 27-192 (219)
20 3bus_A REBM, methyltransferase 99.8 9E-19 3.1E-23 150.9 16.2 158 117-286 50-217 (273)
21 3hnr_A Probable methyltransfer 99.8 1.1E-18 3.8E-23 145.5 15.9 163 119-295 36-210 (220)
22 3dlc_A Putative S-adenosyl-L-m 99.8 2.3E-19 7.9E-24 149.0 11.5 165 118-295 34-213 (219)
23 3ujc_A Phosphoethanolamine N-m 99.8 1.4E-18 4.8E-23 148.8 15.0 156 118-286 45-207 (266)
24 1ve3_A Hypothetical protein PH 99.8 1.7E-19 5.8E-24 151.0 8.7 161 129-296 37-226 (227)
25 1vl5_A Unknown conserved prote 99.8 9.6E-19 3.3E-23 149.7 12.8 155 116-285 25-190 (260)
26 3pfg_A N-methyltransferase; N, 99.8 7.3E-19 2.5E-23 150.7 12.0 164 128-296 48-248 (263)
27 1nkv_A Hypothetical protein YJ 99.8 2.5E-18 8.7E-23 146.6 15.2 153 118-285 26-187 (256)
28 3ou2_A SAM-dependent methyltra 99.8 4.7E-18 1.6E-22 141.2 15.8 160 119-286 36-206 (218)
29 2o57_A Putative sarcosine dime 99.8 3.7E-18 1.3E-22 148.9 15.5 145 128-285 80-234 (297)
30 1xtp_A LMAJ004091AAA; SGPP, st 99.8 1.2E-18 4.2E-23 148.3 11.3 150 118-286 83-239 (254)
31 1kpg_A CFA synthase;, cyclopro 99.8 5.8E-18 2E-22 147.0 15.6 162 118-285 54-228 (287)
32 3mgg_A Methyltransferase; NYSG 99.8 2.5E-18 8.4E-23 148.4 12.6 153 128-285 35-198 (276)
33 3vc1_A Geranyl diphosphate 2-C 99.8 1.5E-17 5.2E-22 146.2 17.3 164 109-286 97-270 (312)
34 3bxo_A N,N-dimethyltransferase 99.8 3.5E-18 1.2E-22 144.1 11.6 163 129-296 39-238 (239)
35 3ocj_A Putative exported prote 99.8 3.1E-18 1.1E-22 150.2 11.2 166 128-296 116-303 (305)
36 3f4k_A Putative methyltransfer 99.8 1.6E-17 5.3E-22 141.7 15.2 144 128-286 44-197 (257)
37 3l8d_A Methyltransferase; stru 99.8 1.4E-17 4.6E-22 140.8 14.5 144 128-285 51-200 (242)
38 3hem_A Cyclopropane-fatty-acyl 99.8 8.2E-18 2.8E-22 147.2 13.3 163 118-286 62-244 (302)
39 1xxl_A YCGJ protein; structura 99.8 7.8E-18 2.7E-22 142.4 12.6 153 118-285 11-174 (239)
40 2qe6_A Uncharacterized protein 99.7 1.1E-17 3.9E-22 144.3 13.3 141 130-281 77-238 (274)
41 3h2b_A SAM-dependent methyltra 99.7 3.7E-18 1.3E-22 140.5 9.8 139 131-287 42-184 (203)
42 3dli_A Methyltransferase; PSI- 99.7 3.4E-17 1.1E-21 138.5 15.7 141 128-286 39-185 (240)
43 3kkz_A Uncharacterized protein 99.7 1.5E-17 5.2E-22 142.8 13.1 144 128-286 44-197 (267)
44 3lcc_A Putative methyl chlorid 99.7 7.6E-18 2.6E-22 141.9 11.0 133 131-286 67-208 (235)
45 3gu3_A Methyltransferase; alph 99.7 1.5E-17 5.1E-22 144.3 12.9 153 128-285 20-190 (284)
46 2fk8_A Methoxy mycolic acid sy 99.7 1.3E-17 4.5E-22 146.9 12.7 162 118-285 80-254 (318)
47 3i9f_A Putative type 11 methyl 99.7 5.7E-18 1.9E-22 135.5 8.7 142 128-295 15-158 (170)
48 3g2m_A PCZA361.24; SAM-depende 99.7 1.8E-17 6.3E-22 144.7 12.1 170 118-295 73-290 (299)
49 2ex4_A Adrenal gland protein A 99.7 1.2E-17 4E-22 141.4 10.5 140 130-287 79-227 (241)
50 1pjz_A Thiopurine S-methyltran 99.7 2.2E-17 7.6E-22 136.2 11.5 136 128-286 20-177 (203)
51 3g5l_A Putative S-adenosylmeth 99.7 2.7E-17 9.2E-22 140.1 11.1 159 119-285 35-216 (253)
52 4fsd_A Arsenic methyltransfera 99.7 8.2E-17 2.8E-21 145.5 14.5 145 129-284 82-250 (383)
53 3sm3_A SAM-dependent methyltra 99.7 8.8E-17 3E-21 134.9 13.4 149 128-284 28-206 (235)
54 2p7i_A Hypothetical protein; p 99.7 5.3E-17 1.8E-21 137.3 12.1 145 129-285 41-199 (250)
55 3jwg_A HEN1, methyltransferase 99.7 6.3E-17 2.2E-21 134.8 12.1 145 128-282 27-189 (219)
56 3bkw_A MLL3908 protein, S-aden 99.7 2.9E-16 1E-20 132.5 16.2 159 119-285 34-214 (243)
57 3ccf_A Cyclopropane-fatty-acyl 99.7 5.6E-17 1.9E-21 140.2 12.0 156 116-285 45-210 (279)
58 3ege_A Putative methyltransfer 99.7 1.7E-16 5.7E-21 136.0 14.8 151 118-285 24-178 (261)
59 3jwh_A HEN1; methyltransferase 99.7 5.9E-17 2E-21 134.8 11.2 144 128-281 27-188 (217)
60 3e23_A Uncharacterized protein 99.7 3.7E-17 1.3E-21 135.4 9.0 138 128-285 41-182 (211)
61 4htf_A S-adenosylmethionine-de 99.7 3.9E-17 1.3E-21 141.6 9.5 148 130-287 68-234 (285)
62 2p35_A Trans-aconitate 2-methy 99.7 1.4E-16 4.7E-21 135.9 12.7 151 118-279 23-184 (259)
63 2xvm_A Tellurite resistance pr 99.7 3E-16 1E-20 128.3 14.0 142 119-284 23-172 (199)
64 3g07_A 7SK snRNA methylphospha 99.7 1.7E-17 5.7E-22 144.6 6.7 147 129-285 45-269 (292)
65 1y8c_A S-adenosylmethionine-de 99.7 1.9E-16 6.5E-21 133.8 12.4 96 130-230 37-141 (246)
66 3bkx_A SAM-dependent methyltra 99.7 3E-16 1E-20 135.1 13.1 159 119-285 34-219 (275)
67 3ggd_A SAM-dependent methyltra 99.7 2.8E-16 9.6E-21 133.1 11.6 148 128-285 54-219 (245)
68 3d2l_A SAM-dependent methyltra 99.7 4.1E-16 1.4E-20 131.6 12.5 95 129-229 32-135 (243)
69 3cgg_A SAM-dependent methyltra 99.7 1.9E-15 6.4E-20 122.9 15.3 126 129-285 45-175 (195)
70 3e8s_A Putative SAM dependent 99.7 2.1E-16 7.1E-21 131.8 9.4 152 119-284 43-208 (227)
71 2yqz_A Hypothetical protein TT 99.7 9.8E-16 3.3E-20 130.8 12.7 145 128-283 37-194 (263)
72 2gb4_A Thiopurine S-methyltran 99.7 1E-15 3.4E-20 130.4 12.6 134 129-285 67-227 (252)
73 2aot_A HMT, histamine N-methyl 99.6 2E-15 6.7E-20 131.4 12.6 141 130-282 52-218 (292)
74 3g5t_A Trans-aconitate 3-methy 99.6 3.6E-15 1.2E-19 130.1 14.1 141 129-278 35-197 (299)
75 3cc8_A Putative methyltransfer 99.6 3E-15 1E-19 124.9 12.9 157 111-285 16-185 (230)
76 1vlm_A SAM-dependent methyltra 99.6 1.9E-15 6.6E-20 125.9 11.5 135 130-285 47-188 (219)
77 3grz_A L11 mtase, ribosomal pr 99.6 4.8E-15 1.6E-19 122.1 11.3 132 128-296 58-196 (205)
78 2zfu_A Nucleomethylin, cerebra 99.6 8.1E-15 2.8E-19 121.6 12.7 130 119-296 57-190 (215)
79 2p8j_A S-adenosylmethionine-de 99.6 1.2E-15 4.2E-20 125.8 7.5 151 128-282 21-180 (209)
80 3m70_A Tellurite resistance pr 99.6 7.7E-15 2.6E-19 127.1 12.6 142 118-283 110-258 (286)
81 1ri5_A MRNA capping enzyme; me 99.6 6.1E-15 2.1E-19 128.2 12.0 155 128-286 62-251 (298)
82 3thr_A Glycine N-methyltransfe 99.6 6.7E-16 2.3E-20 134.2 5.3 108 118-232 47-176 (293)
83 3e05_A Precorrin-6Y C5,15-meth 99.6 2.1E-14 7.3E-19 118.1 14.0 122 118-277 30-160 (204)
84 1fbn_A MJ fibrillarin homologu 99.6 2E-14 6.8E-19 120.7 13.9 141 128-295 72-226 (230)
85 4hg2_A Methyltransferase type 99.6 4.9E-15 1.7E-19 126.4 9.9 98 129-235 38-139 (257)
86 1wzn_A SAM-dependent methyltra 99.6 3E-14 1E-18 121.0 14.7 98 128-230 39-144 (252)
87 2i62_A Nicotinamide N-methyltr 99.6 1.3E-15 4.4E-20 130.3 6.0 141 129-286 55-240 (265)
88 4e2x_A TCAB9; kijanose, tetron 99.6 1.5E-14 5.1E-19 132.0 13.0 151 116-286 95-254 (416)
89 3giw_A Protein of unknown func 99.6 1.4E-14 4.8E-19 123.5 11.3 143 129-281 77-243 (277)
90 3mq2_A 16S rRNA methyltransfer 99.6 1.6E-14 5.3E-19 120.2 10.9 144 128-286 25-185 (218)
91 2b3t_A Protein methyltransfera 99.6 6.8E-14 2.3E-18 120.7 15.2 136 129-296 108-275 (276)
92 3q87_B N6 adenine specific DNA 99.6 7.3E-14 2.5E-18 111.7 14.0 126 129-293 22-158 (170)
93 2a14_A Indolethylamine N-methy 99.6 2.2E-15 7.5E-20 129.2 5.3 140 129-285 54-238 (263)
94 2kw5_A SLR1183 protein; struct 99.5 3.7E-14 1.3E-18 116.4 11.6 134 130-285 30-171 (202)
95 2g72_A Phenylethanolamine N-me 99.5 4.7E-15 1.6E-19 128.8 5.4 139 130-285 71-256 (289)
96 3p2e_A 16S rRNA methylase; met 99.5 2.2E-14 7.7E-19 120.1 8.9 147 129-286 23-186 (225)
97 2gs9_A Hypothetical protein TT 99.5 2.2E-14 7.5E-19 118.5 8.7 130 130-276 36-171 (211)
98 3ofk_A Nodulation protein S; N 99.5 2.7E-14 9.2E-19 118.4 8.8 100 128-232 49-155 (216)
99 3hm2_A Precorrin-6Y C5,15-meth 99.5 5E-14 1.7E-18 113.0 10.1 124 119-282 16-150 (178)
100 4dzr_A Protein-(glutamine-N5) 99.5 1.4E-14 4.6E-19 119.7 6.0 136 129-295 29-203 (215)
101 1dus_A MJ0882; hypothetical pr 99.5 2E-13 6.8E-18 110.7 12.3 142 118-296 42-193 (194)
102 3orh_A Guanidinoacetate N-meth 99.5 7.7E-15 2.6E-19 123.8 3.0 134 129-282 59-207 (236)
103 1yb2_A Hypothetical protein TA 99.5 9E-14 3.1E-18 119.9 9.1 126 119-284 101-236 (275)
104 4df3_A Fibrillarin-like rRNA/T 99.5 2.2E-13 7.4E-18 113.9 10.9 142 128-295 75-230 (233)
105 1nt2_A Fibrillarin-like PRE-rR 99.5 6.8E-13 2.3E-17 109.8 13.2 136 128-295 55-208 (210)
106 3uwp_A Histone-lysine N-methyl 99.5 1.1E-13 3.8E-18 123.7 8.7 114 117-238 162-295 (438)
107 2ipx_A RRNA 2'-O-methyltransfe 99.5 2.2E-13 7.6E-18 114.4 10.1 141 128-295 75-230 (233)
108 3bgv_A MRNA CAP guanine-N7 met 99.5 3.3E-13 1.1E-17 118.5 11.6 100 129-232 33-156 (313)
109 3iv6_A Putative Zn-dependent a 99.5 2.4E-13 8.1E-18 115.9 10.2 108 117-232 34-149 (261)
110 3htx_A HEN1; HEN1, small RNA m 99.5 4.6E-13 1.6E-17 128.3 13.2 101 128-232 719-835 (950)
111 3mb5_A SAM-dependent methyltra 99.5 4.9E-13 1.7E-17 113.8 12.2 127 118-284 83-221 (255)
112 2vdw_A Vaccinia virus capping 99.5 2.8E-13 9.6E-18 118.3 10.8 152 130-285 48-246 (302)
113 2nxc_A L11 mtase, ribosomal pr 99.5 5E-13 1.7E-17 113.9 11.9 127 128-292 118-251 (254)
114 3njr_A Precorrin-6Y methylase; 99.5 6E-13 2E-17 109.6 12.0 122 120-283 47-178 (204)
115 1af7_A Chemotaxis receptor met 99.4 1.1E-13 3.7E-18 118.9 7.3 97 130-229 105-250 (274)
116 2pxx_A Uncharacterized protein 99.4 2.2E-13 7.7E-18 112.4 8.8 102 128-233 40-161 (215)
117 1xdz_A Methyltransferase GIDB; 99.4 1.9E-13 6.5E-18 115.4 8.0 122 128-284 68-201 (240)
118 2h00_A Methyltransferase 10 do 99.4 1.5E-14 5.2E-19 123.1 1.3 144 130-285 65-238 (254)
119 3evz_A Methyltransferase; NYSG 99.4 9E-13 3.1E-17 110.3 11.9 130 128-288 53-209 (230)
120 3bwc_A Spermidine synthase; SA 99.4 4.3E-13 1.5E-17 117.3 10.2 130 129-285 94-240 (304)
121 1g8a_A Fibrillarin-like PRE-rR 99.4 1.9E-12 6.6E-17 108.1 13.7 142 128-296 71-226 (227)
122 1yzh_A TRNA (guanine-N(7)-)-me 99.4 1.1E-12 3.6E-17 108.8 12.0 98 130-231 41-156 (214)
123 3lpm_A Putative methyltransfer 99.4 1.6E-12 5.5E-17 111.0 13.4 125 128-285 46-201 (259)
124 1zx0_A Guanidinoacetate N-meth 99.4 6E-14 2E-18 118.2 4.2 101 129-233 59-172 (236)
125 1l3i_A Precorrin-6Y methyltran 99.4 8.1E-13 2.8E-17 106.9 10.4 121 119-279 24-154 (192)
126 3fpf_A Mtnas, putative unchara 99.4 4.6E-13 1.6E-17 115.4 9.3 96 128-231 120-222 (298)
127 3kr9_A SAM-dependent methyltra 99.4 1.2E-12 4.1E-17 108.8 11.3 130 129-295 14-156 (225)
128 3mti_A RRNA methylase; SAM-dep 99.4 4.3E-13 1.5E-17 108.4 8.3 134 128-286 20-170 (185)
129 3eey_A Putative rRNA methylase 99.4 7E-13 2.4E-17 108.3 9.0 136 128-286 20-174 (197)
130 3g89_A Ribosomal RNA small sub 99.4 3.1E-13 1.1E-17 114.8 7.0 122 129-285 79-212 (249)
131 3lec_A NADB-rossmann superfami 99.4 2.2E-12 7.6E-17 107.4 11.5 130 129-295 20-162 (230)
132 2ld4_A Anamorsin; methyltransf 99.4 1.1E-12 3.8E-17 105.2 9.3 110 128-277 10-128 (176)
133 3m33_A Uncharacterized protein 99.4 2.1E-13 7.2E-18 114.1 5.1 115 129-285 47-167 (226)
134 3fzg_A 16S rRNA methylase; met 99.4 8.3E-13 2.9E-17 105.9 7.9 97 128-231 47-152 (200)
135 2fca_A TRNA (guanine-N(7)-)-me 99.4 2.2E-12 7.6E-17 106.9 10.9 98 130-231 38-153 (213)
136 1jsx_A Glucose-inhibited divis 99.4 9.6E-13 3.3E-17 108.2 8.4 93 130-231 65-165 (207)
137 2pjd_A Ribosomal RNA small sub 99.4 5.3E-13 1.8E-17 118.7 7.3 111 117-232 185-304 (343)
138 4dcm_A Ribosomal RNA large sub 99.4 1.4E-12 4.8E-17 117.2 9.7 108 119-231 213-334 (375)
139 2pwy_A TRNA (adenine-N(1)-)-me 99.4 1.9E-12 6.6E-17 110.0 10.0 126 119-284 87-223 (258)
140 2yxd_A Probable cobalt-precorr 99.4 2.5E-12 8.4E-17 103.3 9.8 121 119-282 26-154 (183)
141 3id6_C Fibrillarin-like rRNA/T 99.4 9.7E-12 3.3E-16 104.0 13.5 151 118-295 63-229 (232)
142 1o54_A SAM-dependent O-methylt 99.4 2.9E-12 1E-16 110.4 10.2 127 118-284 102-238 (277)
143 2frn_A Hypothetical protein PH 99.3 6.8E-12 2.3E-16 108.3 12.0 122 128-281 123-253 (278)
144 3gnl_A Uncharacterized protein 99.3 6.8E-12 2.3E-16 105.3 11.0 130 129-295 20-162 (244)
145 2ozv_A Hypothetical protein AT 99.3 8.6E-12 2.9E-16 106.6 11.9 100 128-230 34-169 (260)
146 1u2z_A Histone-lysine N-methyl 99.3 5.2E-12 1.8E-16 114.8 10.4 112 118-237 232-365 (433)
147 3b3j_A Histone-arginine methyl 99.3 2.5E-12 8.5E-17 119.1 8.4 106 118-229 148-261 (480)
148 2y1w_A Histone-arginine methyl 99.3 2.8E-12 9.7E-17 114.2 8.4 107 118-230 40-154 (348)
149 3dxy_A TRNA (guanine-N(7)-)-me 99.3 2.6E-12 9E-17 106.9 6.8 98 130-231 34-150 (218)
150 2avn_A Ubiquinone/menaquinone 99.3 4E-12 1.4E-16 108.5 7.8 96 130-233 54-154 (260)
151 3lbf_A Protein-L-isoaspartate 99.3 8.9E-12 3E-16 102.7 9.4 100 118-232 67-175 (210)
152 2yxe_A Protein-L-isoaspartate 99.3 7.8E-12 2.7E-16 103.4 9.0 101 119-232 68-178 (215)
153 3duw_A OMT, O-methyltransferas 99.3 7.3E-12 2.5E-16 104.3 8.8 100 128-235 56-171 (223)
154 3ntv_A MW1564 protein; rossman 99.3 3.9E-12 1.4E-16 106.8 7.1 99 128-234 69-179 (232)
155 3tfw_A Putative O-methyltransf 99.3 4.4E-12 1.5E-16 107.6 7.4 100 128-235 61-174 (248)
156 3hp7_A Hemolysin, putative; st 99.3 9.5E-12 3.3E-16 107.3 9.5 142 119-285 75-232 (291)
157 3r3h_A O-methyltransferase, SA 99.3 1.3E-11 4.3E-16 104.4 9.9 101 128-236 58-175 (242)
158 1o9g_A RRNA methyltransferase; 99.3 6.9E-12 2.4E-16 106.4 7.8 100 130-232 51-215 (250)
159 3u81_A Catechol O-methyltransf 99.3 3.3E-12 1.1E-16 106.3 5.6 100 128-233 56-172 (221)
160 2bm8_A Cephalosporin hydroxyla 99.3 1.6E-11 5.4E-16 103.4 9.7 95 130-232 81-188 (236)
161 2qm3_A Predicted methyltransfe 99.3 4E-11 1.4E-15 107.8 12.7 97 130-233 172-279 (373)
162 3p9n_A Possible methyltransfer 99.3 1.9E-11 6.4E-16 99.2 9.7 100 129-233 43-155 (189)
163 3lcv_B Sisomicin-gentamicin re 99.3 6.3E-12 2.1E-16 105.4 6.9 133 129-283 131-270 (281)
164 2gpy_A O-methyltransferase; st 99.3 1.4E-11 4.7E-16 103.3 8.5 99 128-234 52-163 (233)
165 3gjy_A Spermidine synthase; AP 99.3 9.8E-12 3.3E-16 108.4 7.8 98 132-232 91-201 (317)
166 1nv8_A HEMK protein; class I a 99.2 1.7E-11 5.8E-16 106.1 9.1 95 130-229 123-247 (284)
167 3tr6_A O-methyltransferase; ce 99.2 8.6E-12 2.9E-16 103.9 6.9 100 128-235 62-178 (225)
168 3opn_A Putative hemolysin; str 99.2 3.3E-12 1.1E-16 107.3 4.3 147 119-285 27-184 (232)
169 3dr5_A Putative O-methyltransf 99.2 3.7E-11 1.3E-15 100.1 10.7 95 132-234 58-166 (221)
170 1vbf_A 231AA long hypothetical 99.2 2.5E-11 8.5E-16 101.5 9.2 100 118-232 60-166 (231)
171 1jg1_A PIMT;, protein-L-isoasp 99.2 1.8E-11 6.1E-16 102.9 8.0 101 118-232 81-190 (235)
172 3dmg_A Probable ribosomal RNA 99.2 2.6E-11 8.9E-16 109.1 9.3 97 130-231 233-340 (381)
173 3q7e_A Protein arginine N-meth 99.2 1.5E-11 5.1E-16 109.6 7.6 97 128-228 64-170 (349)
174 1ej0_A FTSJ; methyltransferase 99.2 5.3E-11 1.8E-15 94.7 10.0 97 128-232 20-137 (180)
175 3bzb_A Uncharacterized protein 99.2 5.6E-11 1.9E-15 102.7 10.8 99 128-230 77-204 (281)
176 3ckk_A TRNA (guanine-N(7)-)-me 99.2 2.5E-11 8.6E-16 102.1 7.9 99 129-231 45-168 (235)
177 1dl5_A Protein-L-isoaspartate 99.2 3.6E-11 1.2E-15 105.7 9.2 102 118-232 65-176 (317)
178 1i9g_A Hypothetical protein RV 99.2 5.8E-11 2E-15 102.2 10.3 103 118-232 89-204 (280)
179 3r0q_C Probable protein argini 99.2 2.6E-11 9E-16 109.0 8.2 102 128-233 61-171 (376)
180 3adn_A Spermidine synthase; am 99.2 2.5E-11 8.4E-16 105.5 7.5 100 129-231 82-198 (294)
181 2vdv_E TRNA (guanine-N(7)-)-me 99.2 2.4E-11 8.1E-16 102.9 7.0 95 128-230 47-172 (246)
182 2plw_A Ribosomal RNA methyltra 99.2 1.2E-10 4.2E-15 95.1 10.5 102 120-230 13-153 (201)
183 2fyt_A Protein arginine N-meth 99.2 7.8E-11 2.7E-15 104.5 10.0 104 119-228 55-168 (340)
184 1ixk_A Methyltransferase; open 99.2 9.5E-11 3.3E-15 102.9 10.4 103 128-233 116-248 (315)
185 1ws6_A Methyltransferase; stru 99.2 2.1E-11 7.1E-16 96.8 5.5 94 130-232 41-148 (171)
186 1p91_A Ribosomal RNA large sub 99.2 3.4E-11 1.2E-15 103.1 7.2 93 129-233 84-180 (269)
187 2b25_A Hypothetical protein; s 99.2 1.7E-11 5.8E-16 108.6 5.4 102 119-232 96-220 (336)
188 3c3p_A Methyltransferase; NP_9 99.2 1.9E-11 6.5E-16 100.8 5.3 98 129-234 55-163 (210)
189 1sui_A Caffeoyl-COA O-methyltr 99.2 4.6E-11 1.6E-15 101.2 7.4 99 128-234 77-193 (247)
190 3tma_A Methyltransferase; thum 99.2 2.2E-10 7.4E-15 102.2 12.0 110 117-231 192-317 (354)
191 2hnk_A SAM-dependent O-methylt 99.2 3.5E-11 1.2E-15 101.3 6.4 100 128-235 58-185 (239)
192 2esr_A Methyltransferase; stru 99.2 1.9E-11 6.6E-16 97.9 4.5 97 129-232 30-139 (177)
193 2fhp_A Methylase, putative; al 99.2 4.9E-11 1.7E-15 96.1 6.8 97 129-232 43-155 (187)
194 1g6q_1 HnRNP arginine N-methyl 99.1 7.9E-11 2.7E-15 104.0 8.3 97 128-228 36-142 (328)
195 1uir_A Polyamine aminopropyltr 99.1 1.7E-10 5.7E-15 101.3 10.1 100 129-231 76-195 (314)
196 2pbf_A Protein-L-isoaspartate 99.1 1.6E-10 5.5E-15 96.3 9.6 94 128-232 78-194 (227)
197 1iy9_A Spermidine synthase; ro 99.1 1.4E-10 4.6E-15 99.9 9.1 98 130-230 75-188 (275)
198 2avd_A Catechol-O-methyltransf 99.1 5.6E-11 1.9E-15 99.2 6.3 99 128-234 67-182 (229)
199 3frh_A 16S rRNA methylase; met 99.1 3.1E-10 1.1E-14 94.3 10.6 95 129-231 104-205 (253)
200 2ift_A Putative methylase HI07 99.1 4.8E-11 1.7E-15 97.9 5.6 97 130-233 53-165 (201)
201 3c3y_A Pfomt, O-methyltransfer 99.1 9.1E-11 3.1E-15 98.8 7.2 98 128-233 68-183 (237)
202 3a27_A TYW2, uncharacterized p 99.1 1.5E-10 5.1E-15 99.5 8.7 100 128-236 117-224 (272)
203 1r18_A Protein-L-isoaspartate( 99.1 6.7E-11 2.3E-15 98.8 6.1 93 128-231 82-194 (227)
204 2yvl_A TRMI protein, hypotheti 99.1 4.9E-10 1.7E-14 94.5 11.3 100 119-232 82-191 (248)
205 3sso_A Methyltransferase; macr 99.1 5E-11 1.7E-15 106.4 5.1 95 129-233 215-326 (419)
206 2i7c_A Spermidine synthase; tr 99.1 9.6E-11 3.3E-15 101.3 6.2 99 129-230 77-191 (283)
207 2b2c_A Spermidine synthase; be 99.1 8.4E-11 2.9E-15 103.0 5.7 100 129-231 107-222 (314)
208 3gdh_A Trimethylguanosine synt 99.1 4.9E-12 1.7E-16 106.6 -2.1 135 130-287 78-221 (241)
209 3cbg_A O-methyltransferase; cy 99.1 9.4E-11 3.2E-15 98.3 5.7 99 129-235 71-186 (232)
210 1i1n_A Protein-L-isoaspartate 99.1 2.8E-10 9.5E-15 94.8 8.4 94 128-232 75-183 (226)
211 1ne2_A Hypothetical protein TA 99.1 5.2E-10 1.8E-14 91.3 9.8 89 129-218 50-139 (200)
212 2oxt_A Nucleoside-2'-O-methylt 99.1 3.5E-10 1.2E-14 96.7 8.9 97 128-231 72-185 (265)
213 2pt6_A Spermidine synthase; tr 99.1 1.1E-10 3.8E-15 102.6 5.9 99 129-230 115-229 (321)
214 2wa2_A Non-structural protein 99.1 3.2E-10 1.1E-14 97.5 8.6 97 128-231 80-193 (276)
215 1zq9_A Probable dimethyladenos 99.1 1.1E-10 3.7E-15 101.0 5.4 104 117-228 17-144 (285)
216 4azs_A Methyltransferase WBDD; 99.1 6.8E-11 2.3E-15 112.0 4.5 104 128-236 64-178 (569)
217 1mjf_A Spermidine synthase; sp 99.1 1E-10 3.5E-15 101.0 5.1 98 129-230 74-192 (281)
218 1xj5_A Spermidine synthase 1; 99.1 1.4E-10 4.7E-15 102.5 6.0 99 129-230 119-234 (334)
219 2o07_A Spermidine synthase; st 99.1 7.3E-11 2.5E-15 103.0 4.0 100 129-231 94-209 (304)
220 2fpo_A Methylase YHHF; structu 99.1 2.7E-10 9.2E-15 93.5 7.1 97 130-233 54-162 (202)
221 2nyu_A Putative ribosomal RNA 99.0 2.7E-10 9.3E-15 92.5 6.9 97 128-232 20-146 (196)
222 3dou_A Ribosomal RNA large sub 99.0 4.7E-10 1.6E-14 91.2 8.1 102 119-231 15-139 (191)
223 2yxl_A PH0851 protein, 450AA l 99.0 1.6E-09 5.3E-14 99.7 11.9 104 128-234 257-392 (450)
224 2cmg_A Spermidine synthase; tr 99.0 6.6E-10 2.2E-14 94.9 8.5 90 129-230 71-170 (262)
225 1inl_A Spermidine synthase; be 99.0 1.9E-10 6.6E-15 100.0 5.2 98 130-230 90-204 (296)
226 2p41_A Type II methyltransfera 99.0 5E-10 1.7E-14 97.7 7.5 96 128-229 80-189 (305)
227 1wy7_A Hypothetical protein PH 99.0 1.8E-09 6.3E-14 88.5 10.4 89 129-218 48-141 (207)
228 3tm4_A TRNA (guanine N2-)-meth 99.0 1.1E-09 3.7E-14 98.4 8.6 121 129-285 216-352 (373)
229 3k6r_A Putative transferase PH 99.0 1.9E-09 6.7E-14 92.4 9.7 121 128-280 123-252 (278)
230 4hc4_A Protein arginine N-meth 99.0 9.8E-10 3.3E-14 98.2 7.9 95 130-228 83-186 (376)
231 2igt_A SAM dependent methyltra 99.0 2.7E-09 9.3E-14 94.2 10.6 98 130-233 153-274 (332)
232 3ajd_A Putative methyltransfer 99.0 9.2E-10 3.1E-14 94.6 7.3 104 128-234 81-214 (274)
233 3m6w_A RRNA methylase; rRNA me 98.9 3E-09 1E-13 97.5 8.2 103 128-234 99-232 (464)
234 2xyq_A Putative 2'-O-methyl tr 98.9 6.4E-09 2.2E-13 89.7 9.4 115 128-283 61-195 (290)
235 2ih2_A Modification methylase 98.9 9.3E-09 3.2E-13 93.6 11.1 107 117-232 28-165 (421)
236 2h1r_A Dimethyladenosine trans 98.9 1.7E-09 5.9E-14 94.1 5.8 90 117-211 31-127 (299)
237 1qam_A ERMC' methyltransferase 98.9 5.1E-09 1.8E-13 88.4 7.8 78 117-198 19-102 (244)
238 1sqg_A SUN protein, FMU protei 98.8 5.9E-09 2E-13 95.3 7.8 104 128-234 244-377 (429)
239 1yub_A Ermam, rRNA methyltrans 98.8 2.1E-09 7.2E-14 90.8 3.9 106 117-231 18-145 (245)
240 3m4x_A NOL1/NOP2/SUN family pr 98.8 7.1E-09 2.4E-13 94.9 7.6 104 128-234 103-237 (456)
241 2f8l_A Hypothetical protein LM 98.8 3.8E-09 1.3E-13 93.8 5.4 99 130-231 130-256 (344)
242 2frx_A Hypothetical protein YE 98.8 2.3E-08 7.8E-13 92.4 10.6 103 130-235 117-250 (479)
243 2b78_A Hypothetical protein SM 98.7 8.6E-09 2.9E-13 92.9 5.6 99 129-231 211-331 (385)
244 1uwv_A 23S rRNA (uracil-5-)-me 98.7 5.7E-08 1.9E-12 88.8 11.0 119 128-286 284-415 (433)
245 1wxx_A TT1595, hypothetical pr 98.7 8.9E-09 3E-13 92.7 5.4 98 130-232 209-326 (382)
246 3c0k_A UPF0064 protein YCCW; P 98.7 1.2E-08 4E-13 92.4 6.2 98 129-231 219-339 (396)
247 2yx1_A Hypothetical protein MJ 98.7 1.5E-08 5.1E-13 89.6 6.6 94 129-234 194-294 (336)
248 3gru_A Dimethyladenosine trans 98.7 3.2E-08 1.1E-12 85.6 7.6 77 117-197 39-122 (295)
249 3k0b_A Predicted N6-adenine-sp 98.7 4.7E-08 1.6E-12 88.1 8.4 113 117-232 190-351 (393)
250 2as0_A Hypothetical protein PH 98.7 2.3E-08 7.9E-13 90.4 6.3 99 130-232 217-336 (396)
251 3ldg_A Putative uncharacterize 98.6 1.3E-07 4.5E-12 84.8 10.7 114 116-232 182-344 (384)
252 3b5i_A S-adenosyl-L-methionine 98.6 4.8E-07 1.6E-11 80.6 13.9 150 131-284 53-297 (374)
253 4dmg_A Putative uncharacterize 98.6 7.1E-08 2.4E-12 86.9 8.4 99 129-232 213-327 (393)
254 1m6y_A S-adenosyl-methyltransf 98.6 5E-08 1.7E-12 84.7 6.1 79 116-196 14-105 (301)
255 3ftd_A Dimethyladenosine trans 98.6 2.1E-07 7.1E-12 78.7 9.2 94 117-217 20-118 (249)
256 3ldu_A Putative methylase; str 98.6 9.2E-08 3.1E-12 86.0 7.5 114 116-232 183-345 (385)
257 2okc_A Type I restriction enzy 98.5 6.4E-08 2.2E-12 88.8 5.6 109 119-232 162-308 (445)
258 2qfm_A Spermine synthase; sper 98.5 8.9E-08 3.1E-12 84.5 6.3 98 129-230 187-313 (364)
259 3fut_A Dimethyladenosine trans 98.5 1.6E-07 5.3E-12 80.3 7.6 90 118-213 37-133 (271)
260 3o4f_A Spermidine synthase; am 98.5 1.4E-07 4.7E-12 81.1 6.9 99 129-230 82-197 (294)
261 2jjq_A Uncharacterized RNA met 98.5 2.7E-07 9.4E-12 84.0 8.7 90 129-230 289-386 (425)
262 2efj_A 3,7-dimethylxanthine me 98.5 5.9E-07 2E-11 80.2 10.6 150 131-283 53-290 (384)
263 3tqs_A Ribosomal RNA small sub 98.5 4.2E-07 1.4E-11 77.0 8.2 68 117-188 18-90 (255)
264 3v97_A Ribosomal RNA large sub 98.4 2.3E-07 8E-12 89.6 6.7 99 129-231 538-657 (703)
265 4gqb_A Protein arginine N-meth 98.4 4.7E-07 1.6E-11 85.7 8.3 95 130-227 357-463 (637)
266 1rjd_A PPM1P, carboxy methyl t 98.4 3.3E-06 1.1E-10 74.3 12.5 144 129-278 96-281 (334)
267 3uzu_A Ribosomal RNA small sub 98.4 9.9E-08 3.4E-12 82.0 2.5 71 117-189 31-106 (279)
268 2k4m_A TR8_protein, UPF0146 pr 98.4 1.6E-06 5.5E-11 65.9 8.4 83 129-232 34-122 (153)
269 2qy6_A UPF0209 protein YFCK; s 98.3 3.9E-07 1.3E-11 77.2 5.3 131 130-295 60-245 (257)
270 1qyr_A KSGA, high level kasuga 98.3 3.2E-07 1.1E-11 77.7 4.2 84 117-204 10-104 (252)
271 3v97_A Ribosomal RNA large sub 98.3 2E-06 6.9E-11 83.1 8.9 111 117-232 179-348 (703)
272 1m6e_X S-adenosyl-L-methionnin 98.3 5.5E-06 1.9E-10 73.3 10.8 150 130-282 51-277 (359)
273 2r6z_A UPF0341 protein in RSP 98.2 1.1E-06 3.8E-11 74.6 5.8 71 128-200 81-172 (258)
274 3bt7_A TRNA (uracil-5-)-methyl 98.2 5.4E-07 1.8E-11 80.6 3.9 89 131-232 214-327 (369)
275 2dul_A N(2),N(2)-dimethylguano 98.2 1E-06 3.4E-11 79.0 5.6 93 130-231 47-164 (378)
276 3evf_A RNA-directed RNA polyme 98.2 2.9E-06 9.9E-11 71.6 7.9 103 128-234 72-186 (277)
277 2b9e_A NOL1/NOP2/SUN domain fa 98.2 4.7E-06 1.6E-10 72.5 8.3 68 128-195 100-180 (309)
278 3ua3_A Protein arginine N-meth 98.2 1.3E-06 4.4E-11 82.9 4.9 95 131-228 410-531 (745)
279 3axs_A Probable N(2),N(2)-dime 98.1 1.1E-06 3.9E-11 78.8 3.8 94 129-231 51-158 (392)
280 3gcz_A Polyprotein; flavivirus 98.1 3.2E-06 1.1E-10 71.5 5.5 107 118-229 80-199 (282)
281 2ar0_A M.ecoki, type I restric 98.0 9.8E-06 3.4E-10 76.0 6.8 100 129-231 168-312 (541)
282 3c6k_A Spermine synthase; sper 97.9 1.1E-05 3.7E-10 71.5 5.0 96 130-229 205-329 (381)
283 4auk_A Ribosomal RNA large sub 97.8 7.2E-05 2.5E-09 66.0 9.5 95 128-231 209-306 (375)
284 2uyo_A Hypothetical protein ML 97.8 6.9E-05 2.4E-09 65.1 9.3 142 129-280 101-274 (310)
285 3ll7_A Putative methyltransfer 97.8 6.4E-06 2.2E-10 74.2 2.3 65 129-195 92-169 (410)
286 3iei_A Leucine carboxyl methyl 97.8 0.00032 1.1E-08 61.5 12.8 146 130-285 90-281 (334)
287 3cvo_A Methyltransferase-like 97.8 0.00011 3.7E-09 59.7 8.9 92 128-233 28-155 (202)
288 1wg8_A Predicted S-adenosylmet 97.8 3.4E-05 1.2E-09 65.5 5.9 76 116-195 10-95 (285)
289 2oyr_A UPF0341 protein YHIQ; a 97.7 2.5E-05 8.5E-10 66.1 4.5 80 118-201 76-176 (258)
290 3eld_A Methyltransferase; flav 97.7 6E-05 2E-09 64.1 6.7 99 128-229 79-189 (300)
291 3khk_A Type I restriction-modi 97.7 2.9E-05 9.8E-10 72.8 4.7 97 132-231 246-395 (544)
292 3s1s_A Restriction endonucleas 97.6 0.00017 5.9E-09 69.5 9.1 101 129-232 320-466 (878)
293 3lkd_A Type I restriction-modi 97.5 0.00018 6.1E-09 67.3 7.6 99 130-231 221-358 (542)
294 2vz8_A Fatty acid synthase; tr 97.4 3.7E-05 1.3E-09 83.7 1.3 143 130-284 1240-1394(2512)
295 3p8z_A Mtase, non-structural p 97.3 0.00042 1.4E-08 56.9 6.5 100 118-220 68-179 (267)
296 2px2_A Genome polyprotein [con 97.2 0.00063 2.2E-08 56.6 6.9 105 118-229 63-181 (269)
297 3tka_A Ribosomal RNA small sub 97.2 0.00068 2.3E-08 58.9 6.8 68 116-185 45-115 (347)
298 3lkz_A Non-structural protein 97.2 0.00089 3E-08 56.8 7.2 106 118-229 84-202 (321)
299 2wk1_A NOVP; transferase, O-me 97.1 0.001 3.6E-08 56.7 7.5 97 129-233 105-245 (282)
300 2zwa_A Leucine carboxyl methyl 97.0 0.01 3.5E-07 57.3 13.9 146 130-285 107-309 (695)
301 3vyw_A MNMC2; tRNA wobble urid 96.8 0.0037 1.3E-07 53.8 8.3 130 130-295 96-258 (308)
302 1i4w_A Mitochondrial replicati 96.5 0.0034 1.2E-07 55.3 5.6 56 130-185 58-116 (353)
303 4fzv_A Putative methyltransfer 96.2 0.015 5.1E-07 51.3 8.3 106 128-236 146-289 (359)
304 2zig_A TTHA0409, putative modi 96.1 0.0059 2E-07 52.5 5.3 41 129-171 234-275 (297)
305 3r24_A NSP16, 2'-O-methyl tran 95.9 0.032 1.1E-06 47.4 8.3 92 128-230 107-216 (344)
306 3ufb_A Type I restriction-modi 95.7 0.041 1.4E-06 51.2 9.1 109 118-231 207-362 (530)
307 3tos_A CALS11; methyltransfera 93.8 0.14 5E-06 42.7 6.8 95 130-232 69-217 (257)
308 1g55_A DNA cytosine methyltran 93.1 0.25 8.5E-06 43.2 7.6 125 132-281 3-145 (343)
309 1g60_A Adenine-specific methyl 92.5 0.098 3.4E-06 43.8 3.9 40 129-170 211-251 (260)
310 2oo3_A Protein involved in cat 91.5 0.41 1.4E-05 40.5 6.6 100 131-235 92-202 (283)
311 3pvc_A TRNA 5-methylaminomethy 91.5 0.21 7E-06 48.0 5.4 119 130-283 58-231 (689)
312 2py6_A Methyltransferase FKBM; 90.7 0.21 7E-06 44.9 4.2 56 129-184 225-292 (409)
313 3g7u_A Cytosine-specific methy 90.6 1 3.4E-05 39.9 8.5 119 132-279 3-145 (376)
314 3fwz_A Inner membrane protein 90.1 2 7E-05 31.7 8.9 86 132-229 8-103 (140)
315 2c7p_A Modification methylase 90.0 1.6 5.5E-05 37.7 9.3 121 131-281 11-149 (327)
316 3pqk_A Biofilm growth-associat 89.9 0.16 5.4E-06 35.7 2.3 47 30-78 18-64 (102)
317 2heo_A Z-DNA binding protein 1 89.8 0.068 2.3E-06 34.8 0.2 42 37-78 12-53 (67)
318 3qv2_A 5-cytosine DNA methyltr 89.7 0.64 2.2E-05 40.3 6.4 127 130-282 9-157 (327)
319 3ps9_A TRNA 5-methylaminomethy 89.7 0.51 1.8E-05 45.1 6.4 119 131-284 67-240 (676)
320 1xmk_A Double-stranded RNA-spe 89.2 0.11 3.7E-06 35.0 0.9 41 37-78 13-54 (79)
321 1xn7_A Hypothetical protein YH 89.1 0.16 5.6E-06 34.1 1.7 38 40-78 7-44 (78)
322 3jth_A Transcription activator 88.7 0.12 4E-06 36.2 0.8 47 30-78 18-64 (98)
323 3ggo_A Prephenate dehydrogenas 88.6 2 6.8E-05 36.9 8.7 83 132-220 34-120 (314)
324 2k02_A Ferrous iron transport 87.6 0.19 6.4E-06 34.5 1.3 39 40-79 7-45 (87)
325 3f6o_A Probable transcriptiona 87.4 0.14 4.6E-06 37.3 0.5 48 29-78 12-59 (118)
326 3two_A Mannitol dehydrogenase; 86.9 0.73 2.5E-05 40.0 5.0 89 128-232 174-266 (348)
327 1y0u_A Arsenical resistance op 86.9 0.24 8.3E-06 34.4 1.6 46 30-78 26-71 (96)
328 2jt1_A PEFI protein; solution 86.1 0.19 6.6E-06 33.6 0.6 31 48-78 22-52 (77)
329 1zkd_A DUF185; NESG, RPR58, st 86.0 1.3 4.5E-05 39.2 6.2 37 130-166 80-124 (387)
330 1r1u_A CZRA, repressor protein 85.9 0.21 7.1E-06 35.5 0.8 46 31-78 22-67 (106)
331 1oyi_A Double-stranded RNA-bin 85.7 0.23 7.9E-06 33.6 0.9 42 35-78 17-58 (82)
332 3s2e_A Zinc-containing alcohol 85.5 0.5 1.7E-05 40.9 3.2 93 128-232 164-264 (340)
333 1u2w_A CADC repressor, cadmium 85.5 0.28 9.6E-06 35.8 1.3 49 29-78 36-84 (122)
334 1pqw_A Polyketide synthase; ro 85.3 0.41 1.4E-05 37.8 2.4 90 128-233 36-139 (198)
335 2g1u_A Hypothetical protein TM 85.1 9.9 0.00034 28.3 12.0 85 129-220 17-110 (155)
336 4ej6_A Putative zinc-binding d 85.1 2.9 0.0001 36.6 8.0 96 128-234 180-287 (370)
337 3b1f_A Putative prephenate deh 85.0 4 0.00014 34.1 8.7 83 132-220 7-93 (290)
338 3cuo_A Uncharacterized HTH-typ 85.0 0.25 8.6E-06 34.2 0.9 47 31-78 20-66 (99)
339 1f8f_A Benzyl alcohol dehydrog 85.0 0.39 1.3E-05 42.2 2.3 94 128-233 188-291 (371)
340 1r1t_A Transcriptional repress 84.9 0.32 1.1E-05 35.6 1.5 46 31-78 42-87 (122)
341 2dph_A Formaldehyde dismutase; 84.7 0.56 1.9E-05 41.7 3.2 102 128-233 183-301 (398)
342 1pl8_A Human sorbitol dehydrog 84.1 2.7 9.2E-05 36.5 7.3 92 128-232 169-274 (356)
343 2htj_A P fimbrial regulatory p 83.2 0.38 1.3E-05 32.2 1.1 39 39-78 4-42 (81)
344 3f6v_A Possible transcriptiona 82.9 0.37 1.3E-05 36.7 1.1 49 28-78 51-99 (151)
345 2jsc_A Transcriptional regulat 82.9 0.26 8.8E-06 35.8 0.1 47 30-78 16-62 (118)
346 2oqg_A Possible transcriptiona 82.8 0.35 1.2E-05 34.5 0.9 43 34-78 20-62 (114)
347 4h0n_A DNMT2; SAH binding, tra 82.7 1.7 5.9E-05 37.7 5.4 125 132-282 4-146 (333)
348 2kko_A Possible transcriptiona 82.5 0.19 6.4E-06 35.9 -0.7 43 34-78 24-66 (108)
349 3ech_A MEXR, multidrug resista 82.4 2.9 9.9E-05 30.7 6.0 68 10-78 7-79 (142)
350 3uko_A Alcohol dehydrogenase c 82.2 3.9 0.00013 35.8 7.6 94 128-233 191-297 (378)
351 1qgp_A Protein (double strande 82.1 0.34 1.2E-05 32.3 0.5 42 36-78 15-59 (77)
352 1e3j_A NADP(H)-dependent ketos 82.0 2.5 8.6E-05 36.6 6.3 92 128-232 166-272 (352)
353 3l9w_A Glutathione-regulated p 81.5 5.2 0.00018 35.7 8.2 89 131-230 4-101 (413)
354 3h2s_A Putative NADH-flavin re 81.2 7.8 0.00027 30.5 8.6 95 133-232 2-105 (224)
355 3i4p_A Transcriptional regulat 81.1 0.68 2.3E-05 35.6 2.0 42 36-78 4-45 (162)
356 3r6d_A NAD-dependent epimerase 80.4 13 0.00043 29.4 9.6 136 133-284 7-154 (221)
357 3ius_A Uncharacterized conserv 80.3 23 0.00078 29.0 13.7 94 132-232 6-103 (286)
358 1uuf_A YAHK, zinc-type alcohol 80.1 0.77 2.6E-05 40.4 2.3 93 128-232 192-289 (369)
359 1kol_A Formaldehyde dehydrogen 80.0 2.6 8.8E-05 37.3 5.7 99 128-233 183-302 (398)
360 1ub9_A Hypothetical protein PH 80.0 0.36 1.2E-05 33.4 0.0 48 30-78 11-58 (100)
361 1qbj_A Protein (double-strande 79.8 0.77 2.6E-05 30.9 1.7 41 37-78 12-55 (81)
362 1jhg_A Trp operon repressor; c 79.4 0.84 2.9E-05 32.2 1.8 35 34-70 44-78 (101)
363 4dvj_A Putative zinc-dependent 79.3 1.9 6.3E-05 37.8 4.5 90 130-231 171-270 (363)
364 2zkz_A Transcriptional repress 79.3 0.39 1.3E-05 33.6 0.0 44 31-76 23-67 (99)
365 3e48_A Putative nucleoside-dip 78.9 26 0.00087 28.8 11.9 95 133-233 2-107 (289)
366 1cdo_A Alcohol dehydrogenase; 78.8 9.8 0.00034 33.1 9.1 92 128-232 190-295 (374)
367 1v3u_A Leukotriene B4 12- hydr 78.6 4.1 0.00014 34.9 6.4 90 128-233 143-246 (333)
368 2pn6_A ST1022, 150AA long hypo 78.4 0.92 3.2E-05 34.1 2.0 42 36-78 4-45 (150)
369 2h6e_A ADH-4, D-arabinose 1-de 78.2 0.48 1.6E-05 41.1 0.3 93 128-232 169-270 (344)
370 3jv7_A ADH-A; dehydrogenase, n 77.8 1.6 5.4E-05 37.8 3.6 94 128-233 169-272 (345)
371 3r0a_A Putative transcriptiona 77.6 0.62 2.1E-05 34.0 0.7 42 37-78 28-70 (123)
372 1jvb_A NAD(H)-dependent alcoho 77.1 3 0.0001 36.1 5.1 94 128-232 168-272 (347)
373 1uly_A Hypothetical protein PH 77.0 1.3 4.4E-05 35.2 2.5 47 30-78 15-61 (192)
374 2jhf_A Alcohol dehydrogenase E 76.9 8.5 0.00029 33.5 8.1 93 128-232 189-294 (374)
375 2lkp_A Transcriptional regulat 76.8 0.72 2.5E-05 33.2 0.9 46 31-78 28-73 (119)
376 1e3i_A Alcohol dehydrogenase, 76.6 13 0.00043 32.4 9.1 93 128-232 193-298 (376)
377 3m6i_A L-arabinitol 4-dehydrog 76.3 22 0.00077 30.6 10.6 93 128-232 177-284 (363)
378 3tqh_A Quinone oxidoreductase; 76.3 1.7 5.9E-05 37.2 3.3 90 128-230 150-244 (321)
379 1p0f_A NADP-dependent alcohol 76.2 6.9 0.00024 34.1 7.3 93 128-232 189-294 (373)
380 2cfx_A HTH-type transcriptiona 76.1 1.1 3.7E-05 33.6 1.7 41 37-78 7-47 (144)
381 2w25_A Probable transcriptiona 75.8 1.1 3.7E-05 33.8 1.7 41 37-78 9-49 (150)
382 3ubt_Y Modification methylase 75.6 14 0.00047 31.4 9.0 120 133-281 2-139 (331)
383 3llv_A Exopolyphosphatase-rela 75.5 12 0.0004 27.2 7.5 61 132-196 7-77 (141)
384 1rjw_A ADH-HT, alcohol dehydro 75.4 1.8 6.2E-05 37.3 3.3 90 128-232 162-262 (339)
385 1lss_A TRK system potassium up 75.3 16 0.00054 26.1 8.2 87 131-229 4-100 (140)
386 3b73_A PHIH1 repressor-like pr 75.2 0.7 2.4E-05 33.2 0.4 41 37-78 15-57 (111)
387 2lnb_A Z-DNA-binding protein 1 74.8 0.85 2.9E-05 30.2 0.7 42 37-78 21-62 (80)
388 2cyy_A Putative HTH-type trans 74.7 1 3.6E-05 33.9 1.3 41 37-78 9-49 (151)
389 3fpc_A NADP-dependent alcohol 74.6 2.2 7.5E-05 37.0 3.6 94 128-233 164-268 (352)
390 2hcy_A Alcohol dehydrogenase 1 74.1 6.8 0.00023 33.7 6.6 90 128-232 167-270 (347)
391 2p5v_A Transcriptional regulat 73.9 1.3 4.4E-05 33.9 1.7 41 37-78 12-52 (162)
392 2fu4_A Ferric uptake regulatio 73.9 0.95 3.2E-05 30.2 0.8 43 36-78 18-66 (83)
393 1iz0_A Quinone oxidoreductase; 73.9 0.7 2.4E-05 39.2 0.2 92 128-233 123-220 (302)
394 2e1c_A Putative HTH-type trans 73.8 1.3 4.4E-05 34.4 1.7 42 36-78 28-69 (171)
395 2cg4_A Regulatory protein ASNC 72.9 1.2 4.2E-05 33.6 1.3 41 37-78 10-50 (152)
396 2dbb_A Putative HTH-type trans 72.7 1.3 4.4E-05 33.4 1.4 42 36-78 10-51 (151)
397 2c0c_A Zinc binding alcohol de 72.6 2.4 8.4E-05 36.9 3.4 93 128-233 161-263 (362)
398 2fzw_A Alcohol dehydrogenase c 72.2 7.7 0.00026 33.7 6.6 92 128-232 188-293 (373)
399 3l4b_C TRKA K+ channel protien 72.2 16 0.00055 28.9 8.1 86 133-229 2-97 (218)
400 4b7c_A Probable oxidoreductase 72.1 3.2 0.00011 35.6 4.0 94 128-234 147-251 (336)
401 3ew7_A LMO0794 protein; Q8Y8U8 71.9 14 0.00048 28.9 7.6 95 133-232 2-103 (221)
402 1sfx_A Conserved hypothetical 71.6 1.1 3.9E-05 31.1 0.8 42 36-78 21-62 (109)
403 2ia0_A Putative HTH-type trans 71.4 1.6 5.4E-05 33.9 1.7 42 36-78 18-59 (171)
404 3mq0_A Transcriptional repress 71.4 1.4 4.9E-05 37.0 1.5 41 38-78 33-73 (275)
405 3gms_A Putative NADPH:quinone 71.3 1.5 5E-05 37.9 1.6 93 128-233 142-245 (340)
406 4f3n_A Uncharacterized ACR, CO 71.3 3 0.0001 37.4 3.7 58 96-162 112-174 (432)
407 1boo_A Protein (N-4 cytosine-s 71.2 3.7 0.00013 35.3 4.1 41 129-171 251-292 (323)
408 3iht_A S-adenosyl-L-methionine 71.1 4.4 0.00015 30.9 3.9 54 131-185 41-94 (174)
409 4eez_A Alcohol dehydrogenase 1 70.9 4.5 0.00016 34.8 4.7 93 128-231 161-263 (348)
410 2aef_A Calcium-gated potassium 69.9 40 0.0014 26.8 10.2 86 130-229 8-103 (234)
411 3dfz_A SIRC, precorrin-2 dehyd 69.5 4 0.00014 33.1 3.7 65 130-196 30-98 (223)
412 3me5_A Cytosine-specific methy 68.9 14 0.00047 33.7 7.6 123 131-280 88-255 (482)
413 3kp7_A Transcriptional regulat 68.8 15 0.00051 27.0 6.8 40 37-78 40-79 (151)
414 2p4w_A Transcriptional regulat 68.3 1.7 5.7E-05 34.8 1.2 47 30-78 10-56 (202)
415 1i1g_A Transcriptional regulat 68.3 1.8 6.1E-05 32.0 1.3 41 37-78 6-46 (141)
416 3g79_A NDP-N-acetyl-D-galactos 67.8 37 0.0013 30.8 10.2 103 130-238 17-153 (478)
417 3ulk_A Ketol-acid reductoisome 67.7 4.6 0.00016 36.4 4.0 92 130-231 36-132 (491)
418 2j3h_A NADP-dependent oxidored 67.3 18 0.00063 30.8 7.9 93 128-233 153-257 (345)
419 2eih_A Alcohol dehydrogenase; 67.3 6.1 0.00021 34.0 4.7 89 128-233 164-267 (343)
420 3r4k_A Transcriptional regulat 67.2 1.3 4.3E-05 37.0 0.3 41 38-78 9-49 (260)
421 1mkm_A ICLR transcriptional re 66.9 2 7E-05 35.4 1.5 41 38-78 11-51 (249)
422 3qwb_A Probable quinone oxidor 66.8 2.9 9.9E-05 35.9 2.5 92 128-232 146-248 (334)
423 3jyn_A Quinone oxidoreductase; 66.3 1.7 5.9E-05 37.2 1.0 93 128-233 138-241 (325)
424 2y0c_A BCEC, UDP-glucose dehyd 65.8 17 0.00058 33.0 7.6 99 129-234 6-130 (478)
425 2o0y_A Transcriptional regulat 65.7 2.3 8E-05 35.3 1.6 41 38-78 26-66 (260)
426 3oig_A Enoyl-[acyl-carrier-pro 65.6 46 0.0016 26.9 9.8 100 131-235 7-151 (266)
427 3c85_A Putative glutathione-re 65.4 32 0.0011 26.2 8.2 88 131-229 39-137 (183)
428 3gg2_A Sugar dehydrogenase, UD 65.0 20 0.00067 32.3 7.8 97 132-235 3-125 (450)
429 1piw_A Hypothetical zinc-type 65.0 1.3 4.5E-05 38.6 -0.1 95 128-232 177-277 (360)
430 3uog_A Alcohol dehydrogenase; 65.0 9.7 0.00033 33.0 5.6 92 128-234 187-290 (363)
431 1yb5_A Quinone oxidoreductase; 64.3 3.8 0.00013 35.5 2.8 92 128-232 168-270 (351)
432 2g7u_A Transcriptional regulat 64.2 2.5 8.4E-05 35.1 1.5 41 38-78 17-57 (257)
433 2f1k_A Prephenate dehydrogenas 63.6 26 0.0009 28.8 7.9 79 133-220 2-83 (279)
434 2hzt_A Putative HTH-type trans 63.4 3 0.0001 29.3 1.7 37 40-78 19-56 (107)
435 2xrn_A HTH-type transcriptiona 63.2 2.1 7E-05 35.2 0.8 41 38-78 9-49 (241)
436 4ezb_A Uncharacterized conserv 63.1 44 0.0015 28.3 9.3 84 132-231 25-120 (317)
437 3c24_A Putative oxidoreductase 62.9 24 0.00082 29.2 7.5 84 132-230 12-99 (286)
438 3mag_A VP39; methylated adenin 62.5 7.6 0.00026 32.8 4.1 33 130-162 60-96 (307)
439 2o3j_A UDP-glucose 6-dehydroge 62.3 28 0.00096 31.6 8.4 97 132-233 10-136 (481)
440 4eye_A Probable oxidoreductase 62.3 7.8 0.00027 33.3 4.5 93 128-233 157-259 (342)
441 2g5c_A Prephenate dehydrogenas 62.3 32 0.0011 28.3 8.2 82 133-220 3-88 (281)
442 2d8a_A PH0655, probable L-thre 61.9 2.8 9.6E-05 36.2 1.5 92 128-232 166-268 (348)
443 1sfu_A 34L protein; protein/Z- 61.9 3.6 0.00012 27.1 1.7 37 41-78 21-57 (75)
444 2i6t_A Ubiquitin-conjugating e 61.8 15 0.0005 31.2 6.0 66 130-197 13-85 (303)
445 4a2c_A Galactitol-1-phosphate 61.3 51 0.0018 27.9 9.6 96 128-234 158-263 (346)
446 1vpt_A VP39; RNA CAP, poly(A) 61.3 37 0.0013 29.0 8.1 49 131-180 76-128 (348)
447 4a7p_A UDP-glucose dehydrogena 61.0 36 0.0012 30.6 8.7 98 130-234 7-131 (446)
448 1eg2_A Modification methylase 60.9 7.6 0.00026 33.3 4.1 41 129-171 241-285 (319)
449 1q1h_A TFE, transcription fact 60.9 1.8 6.1E-05 30.6 0.0 42 37-78 20-61 (110)
450 4g6q_A Putative uncharacterize 60.8 1.7 6E-05 34.0 -0.0 47 30-78 18-65 (182)
451 2dq4_A L-threonine 3-dehydroge 60.7 37 0.0013 28.9 8.6 88 128-232 163-263 (343)
452 3ip1_A Alcohol dehydrogenase, 60.7 10 0.00036 33.4 5.1 96 128-233 211-320 (404)
453 3df8_A Possible HXLR family tr 60.7 2.9 9.9E-05 29.7 1.1 53 15-78 16-71 (111)
454 3gaz_A Alcohol dehydrogenase s 60.4 5.5 0.00019 34.3 3.1 92 128-233 148-248 (343)
455 4dup_A Quinone oxidoreductase; 60.2 2.9 9.8E-05 36.3 1.3 92 128-232 165-266 (353)
456 3vrd_B FCCB subunit, flavocyto 60.2 8.9 0.0003 33.5 4.5 32 131-162 2-35 (401)
457 3fbg_A Putative arginate lyase 60.1 12 0.00043 32.0 5.4 89 130-230 150-247 (346)
458 2qlz_A Transcription factor PF 59.8 1 3.5E-05 36.9 -1.6 46 29-76 6-51 (232)
459 1id1_A Putative potassium chan 58.9 50 0.0017 24.2 8.1 88 132-229 4-103 (153)
460 2ia2_A Putative transcriptiona 58.9 2.4 8.3E-05 35.3 0.5 41 38-78 24-64 (265)
461 3hn7_A UDP-N-acetylmuramate-L- 58.8 33 0.0011 31.5 8.3 124 130-279 18-151 (524)
462 1z7u_A Hypothetical protein EF 58.8 3.1 0.00011 29.5 1.0 36 41-78 28-64 (112)
463 3bja_A Transcriptional regulat 58.5 4.1 0.00014 29.5 1.7 42 36-78 34-75 (139)
464 3g3z_A NMB1585, transcriptiona 57.6 7.9 0.00027 28.3 3.2 42 36-78 32-73 (145)
465 4hv4_A UDP-N-acetylmuramate--L 57.4 77 0.0026 28.7 10.4 124 130-279 21-151 (494)
466 3pid_A UDP-glucose 6-dehydroge 57.3 36 0.0012 30.5 7.9 99 130-235 35-156 (432)
467 3bdd_A Regulatory protein MARR 57.1 6.9 0.00023 28.4 2.8 42 36-78 32-73 (142)
468 1j5y_A Transcriptional regulat 57.1 3.5 0.00012 32.3 1.1 43 36-78 22-64 (187)
469 1s3j_A YUSO protein; structura 57.0 15 0.0005 27.1 4.7 41 37-78 39-79 (155)
470 2ew2_A 2-dehydropantoate 2-red 56.8 28 0.00097 28.9 7.0 80 132-220 4-100 (316)
471 2b5w_A Glucose dehydrogenase; 56.8 4.8 0.00016 34.9 2.1 86 132-233 174-275 (357)
472 3k0l_A Repressor protein; heli 56.8 5.9 0.0002 29.8 2.4 42 36-78 47-88 (162)
473 3qvo_A NMRA family protein; st 56.6 71 0.0024 25.2 10.7 92 133-233 25-126 (236)
474 3k69_A Putative transcription 56.1 14 0.00046 28.2 4.4 44 29-77 12-55 (162)
475 2y75_A HTH-type transcriptiona 55.8 7.5 0.00026 28.2 2.7 29 49-77 25-53 (129)
476 2nyx_A Probable transcriptiona 55.7 14 0.00048 27.8 4.5 42 36-78 46-87 (168)
477 3goh_A Alcohol dehydrogenase, 55.7 9 0.00031 32.4 3.6 87 128-231 140-229 (315)
478 1qor_A Quinone oxidoreductase; 55.7 2.7 9.3E-05 35.9 0.3 93 128-233 138-241 (327)
479 2pg4_A Uncharacterized protein 55.4 4.3 0.00015 27.7 1.2 38 41-78 21-59 (95)
480 4a0s_A Octenoyl-COA reductase/ 55.2 15 0.00053 32.7 5.3 92 128-232 218-337 (447)
481 3nrv_A Putative transcriptiona 55.1 4.4 0.00015 29.9 1.4 42 36-78 41-82 (148)
482 3krt_A Crotonyl COA reductase; 54.7 9 0.00031 34.5 3.6 92 128-232 226-345 (456)
483 3k2z_A LEXA repressor; winged 54.6 4.5 0.00015 31.9 1.4 35 44-78 18-52 (196)
484 2j8z_A Quinone oxidoreductase; 54.5 20 0.00068 30.9 5.7 92 128-232 160-262 (354)
485 1vj0_A Alcohol dehydrogenase, 54.4 13 0.00044 32.5 4.5 94 128-233 193-300 (380)
486 2nnn_A Probable transcriptiona 54.1 3.7 0.00013 29.8 0.8 42 36-78 39-80 (140)
487 3cdh_A Transcriptional regulat 54.0 5.5 0.00019 29.6 1.8 42 36-78 44-85 (155)
488 1xa0_A Putative NADPH dependen 53.9 12 0.0004 31.9 4.1 92 128-232 146-247 (328)
489 2a61_A Transcriptional regulat 53.8 8.3 0.00028 28.1 2.8 42 36-78 34-75 (145)
490 3nx4_A Putative oxidoreductase 53.7 11 0.00037 32.0 3.8 86 133-232 149-242 (324)
491 4e2x_A TCAB9; kijanose, tetron 53.6 85 0.0029 27.4 9.9 90 129-230 317-409 (416)
492 2zig_A TTHA0409, putative modi 53.5 12 0.00041 31.5 4.1 56 173-231 19-97 (297)
493 2hr3_A Probable transcriptiona 53.2 6.5 0.00022 28.8 2.1 44 35-78 35-78 (147)
494 3fm5_A Transcriptional regulat 53.1 4.1 0.00014 30.2 0.9 43 36-78 40-82 (150)
495 3bpv_A Transcriptional regulat 52.9 4.7 0.00016 29.2 1.2 41 37-78 31-71 (138)
496 2f2e_A PA1607; transcription f 52.8 5.4 0.00018 29.8 1.5 30 49-78 36-65 (146)
497 3boq_A Transcriptional regulat 52.7 16 0.00056 27.0 4.4 43 36-78 48-90 (160)
498 2gxg_A 146AA long hypothetical 52.7 5.9 0.0002 28.9 1.8 41 36-78 38-78 (146)
499 3lsg_A Two-component response 51.9 7.7 0.00026 26.7 2.2 26 49-74 18-43 (103)
500 2d1h_A ST1889, 109AA long hypo 51.7 6.8 0.00023 26.9 1.9 30 49-78 35-64 (109)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=2.2e-51 Score=368.68 Aligned_cols=274 Identities=20% Similarity=0.354 Sum_probs=242.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhh-----------------------
Q 022515 14 EAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQ----------------------- 70 (296)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~----------------------- 70 (296)
++...|++++.||+.+++|++|+||||||+|++.++|+|++|||+++|++++.++|.
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~ 86 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRGGKAFYRN 86 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccCccceeeC
Confidence 667789999999999999999999999999987557999999999999999988871
Q ss_pred ---------------------------------HHHhhhcCCCChhhhhcCC---CchhhcccCchHHHHHHHHHHccch
Q 022515 71 ---------------------------------LRTWFQNDDPTPFDTAHGK---TLWEYAGDEPKLNNFFNEAMASDAW 114 (296)
Q Consensus 71 ---------------------------------l~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~f~~~m~~~~~ 114 (296)
|.+.+++++ ++|...+|. ++|+++.++++....|.+.|.....
T Consensus 87 t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~ 165 (353)
T 4a6d_A 87 TELSSDYLTTVSPTSQCSMLKYMGRTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWS 165 (353)
T ss_dssp CHHHHHHHSTTSTTCCHHHHHHHHHTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHhhcCCchHHHHHHHHhCHHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 122233343 556666653 5788889999999999999999988
Q ss_pred hchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC-----CCCCeeEEeccCCC-CCC
Q 022515 115 LATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-----DLANLKYVGGDMFE-AIS 188 (296)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~ri~~~~~D~~~-~~p 188 (296)
.....+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.|++ ..+||+++.+||++ +.|
T Consensus 166 ~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~ 243 (353)
T 4a6d_A 166 VNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP 243 (353)
T ss_dssp HHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCC
T ss_pred HHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCC
Confidence 88888999998 78889999999999999999999999999999999999988865 46899999999998 566
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW 268 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~ 268 (296)
++|+|++++|||+|+|+++.++|++++++|+| ||+++|+|.+.+++...+ .....+++.|+..++|++||.+||
T Consensus 244 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~~g~ert~~e~ 317 (353)
T 4a6d_A 244 EADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQTEGQERTPTHY 317 (353)
T ss_dssp CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSSSCCCCCHHHH
T ss_pred CceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhCCCcCCCHHHH
Confidence 89999999999999999999999999999999 999999999998766543 345678999999899999999999
Q ss_pred HHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 269 TKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 269 ~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
+++|++|||+.++++++++..++|+|+|
T Consensus 318 ~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 318 HMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp HHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred HHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 9999999999999999999999999997
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=2.6e-45 Score=330.51 Aligned_cols=282 Identities=34% Similarity=0.596 Sum_probs=242.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCC-CCCCHHHHHHHcCC--CCc---chhhhHH----------
Q 022515 9 DTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHG-KPMTLNELVSALTI--NPS---KSRCQLR---------- 72 (296)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~-~~~t~~eLA~~~~~--~~~---~l~~~l~---------- 72 (296)
..+..++...+++++.|++.+++|++|++||||++|++.+ +|+|++|||+++|+ +++ .++|.|+
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~ 93 (364)
T 3p9c_A 14 ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTC 93 (364)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEE
Confidence 3467888999999999999999999999999999998743 69999999999998 877 6655221
Q ss_pred ----------------------------------------------------HhhhcCCCChhhhhcCCCchhhcccCch
Q 022515 73 ----------------------------------------------------TWFQNDDPTPFDTAHGKTLWEYAGDEPK 100 (296)
Q Consensus 73 ----------------------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 100 (296)
+++++|+ ++|+..+|.++|+++.++|+
T Consensus 94 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~ 172 (364)
T 3p9c_A 94 LVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPR 172 (364)
T ss_dssp EEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHH
T ss_pred eccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHH
Confidence 2222333 56666778889999999999
Q ss_pred HHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEe
Q 022515 101 LNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVG 180 (296)
Q Consensus 101 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~ 180 (296)
..+.|.+.|..++......+++.++. +++..+|||||||+|.++..+++++|+++++++|+|++++.++ ..+|++|+.
T Consensus 173 ~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~~~~ 250 (364)
T 3p9c_A 173 FNRVFNEGMKNHSIIITKKLLELYHG-FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAP-QFPGVTHVG 250 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEEEE
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccc-ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhh-hcCCeEEEe
Confidence 99999999998887777788888862 6678999999999999999999999999999999999999998 568999999
Q ss_pred ccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh-hcC
Q 022515 181 GDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV-LLT 259 (296)
Q Consensus 181 ~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 259 (296)
+|+++++|..|+|+++++||+|+++++.++|++++++|+| ||+++|.|.+.++.............+++.|+. ..+
T Consensus 251 ~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~ 327 (364)
T 3p9c_A 251 GDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPG 327 (364)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred CCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccC
Confidence 9999977766999999999999999999999999999999 999999999987754432222223567888885 468
Q ss_pred ccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 260 GTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 260 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
|++||.+||+++|++|||+.+++.++++..++||++|
T Consensus 328 g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 328 GRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp CCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 9999999999999999999999999999999999987
No 3
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=9.3e-45 Score=325.29 Aligned_cols=276 Identities=24% Similarity=0.418 Sum_probs=242.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhh-------------------
Q 022515 9 DTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRC------------------- 69 (296)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~------------------- 69 (296)
+....++...+++++.|++.+++|++|+++|||++|.+ +|.|++|||+++|++++.++|
T Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~~~~~y~ 93 (348)
T 3lst_A 16 DMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGTDADALRRVLRLLAVRDVVRESDGRFA 93 (348)
T ss_dssp CCCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEecCCEEe
Confidence 34567888999999999999999999999999999986 799999999999999999888
Q ss_pred ---------------------------------hHHHhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhc
Q 022515 70 ---------------------------------QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLA 116 (296)
Q Consensus 70 ---------------------------------~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 116 (296)
.|.++++++. ++|...+|.++|+++.++|+....|.+.|.......
T Consensus 94 ~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 172 (348)
T 3lst_A 94 LTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAE 172 (348)
T ss_dssp ECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhh
Confidence 1223344444 677777888899999999999999999999988888
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC----CCCCeeEEeccCCCCCCccce
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS----DLANLKYVGGDMFEAISPADA 192 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~ri~~~~~D~~~~~p~~D~ 192 (296)
...+++.++ +++..+|||||||+|.++..+++++|+++++++|+|+++..++. ..+|++++.+|+++++|+||+
T Consensus 173 ~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~ 250 (348)
T 3lst_A 173 HLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADV 250 (348)
T ss_dssp HHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSE
T ss_pred HHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcE
Confidence 888999988 78889999999999999999999999999999999887773321 467899999999987779999
Q ss_pred eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHH
Q 022515 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLF 272 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 272 (296)
|++++++|+|+++++.++|++++++|+| ||+++|.|...++.... .....+++.|+...+++.+|.++|.+++
T Consensus 251 v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~~~~~~t~~e~~~ll 323 (348)
T 3lst_A 251 HVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGNDA----HQSKEMDFMMLAARTGQERTAAELEPLF 323 (348)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSSC----CHHHHHHHHHHHTTSCCCCBHHHHHHHH
T ss_pred EEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhhhcChhhhhcCCCcCCCHHHHHHHH
Confidence 9999999999999999999999999999 99999999988765332 2345778888877899999999999999
Q ss_pred HhcCCceeEEEEcCCcceEEEEeC
Q 022515 273 TYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 273 ~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
+++||+++++.+..+..++||++|
T Consensus 324 ~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 324 TAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHTTEEEEEEEECSSSCEEEEEEE
T ss_pred HHCCCceEEEEECCCCcEEEEEEe
Confidence 999999999999778899999986
No 4
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=1.1e-43 Score=320.31 Aligned_cols=280 Identities=31% Similarity=0.573 Sum_probs=238.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccC---CCCCCHHHHHHHcC-CCCc---chhhhH------------
Q 022515 11 ELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKH---GKPMTLNELVSALT-INPS---KSRCQL------------ 71 (296)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~---~~~~t~~eLA~~~~-~~~~---~l~~~l------------ 71 (296)
+..+....+++++.|++.+++|++|++||||++|++. ++|+|++|||+++| .++. .++|.|
T Consensus 17 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 96 (368)
T 3reo_A 17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT 96 (368)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence 5677889999999999999999999999999999872 24799999999998 4665 444422
Q ss_pred --------------------------------------------------HHhhhcCCCChhhhhcCCCchhhcccCchH
Q 022515 72 --------------------------------------------------RTWFQNDDPTPFDTAHGKTLWEYAGDEPKL 101 (296)
Q Consensus 72 --------------------------------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 101 (296)
.++++++. ++|+..+|.++|+++.++++.
T Consensus 97 ~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~ 175 (368)
T 3reo_A 97 LRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRI 175 (368)
T ss_dssp EEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHH
T ss_pred cccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHH
Confidence 12222333 566667788899999999999
Q ss_pred HHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEec
Q 022515 102 NNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGG 181 (296)
Q Consensus 102 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~ 181 (296)
.+.|.+.|..+.......+++.++. +++..+|||||||+|.++..+++++|+++++++|+|++++.++ ..++++++.+
T Consensus 176 ~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~~~~~ 253 (368)
T 3reo_A 176 NKVFNKGMSSNSTITMKKILEMYNG-FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAP-AFSGVEHLGG 253 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEEEEC
T ss_pred HHHHHHHHHhhhhhHHHHHHHhccc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhh-hcCCCEEEec
Confidence 9999999999887777788888762 5678999999999999999999999999999999999999998 5689999999
Q ss_pred cCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh-cCc
Q 022515 182 DMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL-LTG 260 (296)
Q Consensus 182 D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 260 (296)
|+++++|..|+|+++++||+|+++++.++|++++++|+| ||+++|.|.+.++.............+++.|+.. .+|
T Consensus 254 d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g 330 (368)
T 3reo_A 254 DMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGG 330 (368)
T ss_dssp CTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBC
T ss_pred CCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCC
Confidence 999977767999999999999999999999999999999 9999999998876554322222345678888865 489
Q ss_pred cccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 261 TERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 261 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
++||.+||+++|+++||+.+++.+..+..++||++|
T Consensus 331 ~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 331 KERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp CCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred ccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 999999999999999999999999998899999986
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=8.2e-44 Score=321.50 Aligned_cols=275 Identities=28% Similarity=0.527 Sum_probs=241.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHH----------------
Q 022515 9 DTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLR---------------- 72 (296)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~---------------- 72 (296)
+....+...++++++.|++.+++|++|++||||++|++ +|.|++|||+++|++++.++|.|+
T Consensus 32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~ 109 (369)
T 3gwz_A 32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDL 109 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCce
Confidence 34455777899999999999999999999999999985 799999999999999999888221
Q ss_pred --------------------------------------HhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccch
Q 022515 73 --------------------------------------TWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAW 114 (296)
Q Consensus 73 --------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~ 114 (296)
+.++++. ++|...+|.++|+++.++++....|.+.|.....
T Consensus 110 y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~ 188 (369)
T 3gwz_A 110 FAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSL 188 (369)
T ss_dssp EECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHh
Confidence 1222333 5566667778999999999999999999998888
Q ss_pred hchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCCCCC
Q 022515 115 LATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFEAIS 188 (296)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~~~p 188 (296)
.....+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ ..+||+++.+|+++++|
T Consensus 189 ~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p 266 (369)
T 3gwz_A 189 TEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIP 266 (369)
T ss_dssp HHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCC
T ss_pred hhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCC
Confidence 77888888888 77889999999999999999999999999999999999988875 36899999999998777
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 267 (296)
+||+|++++++|+|+++++.++|++++++|+| ||+++|.|...++.... . ..++++.|+...++++||.++
T Consensus 267 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~~g~~~t~~e 338 (369)
T 3gwz_A 267 DGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERPAA----S-TLFVDLLLLVLVGGAERSESE 338 (369)
T ss_dssp SSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHHSCCCBCHHH
T ss_pred CCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCC----c-hhHhhHHHHhhcCCccCCHHH
Confidence 69999999999999999999999999999999 99999999988765432 2 457888888888999999999
Q ss_pred HHHHHHhcCCceeEEEE-cCCcceEEEEeC
Q 022515 268 WTKLFTYAGFSDYKIIP-ILGLRSLIEVYP 296 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 296 (296)
|+++++++||+++++.+ ..+..++||++|
T Consensus 339 ~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 339 FAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 99999999999999999 577889999986
No 6
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=1.4e-43 Score=315.68 Aligned_cols=265 Identities=26% Similarity=0.383 Sum_probs=229.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHH-----------------------
Q 022515 16 QTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLR----------------------- 72 (296)
Q Consensus 16 ~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~----------------------- 72 (296)
...+++++.|++.+++|++|+++|||++|.+ +|.|++|||+++|++++.++|.|+
T Consensus 6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~ 83 (332)
T 3i53_A 6 AHIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGE 83 (332)
T ss_dssp CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECTTGG
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcCHhHH
Confidence 3568899999999999999999999999986 799999999999999999888111
Q ss_pred -------------------------------HhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhchHHHH
Q 022515 73 -------------------------------TWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMI 121 (296)
Q Consensus 73 -------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~ 121 (296)
+.++++. ++|...+|.++|+++.++|+....|...|........+.++
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~ 162 (332)
T 3i53_A 84 QLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIA 162 (332)
T ss_dssp GGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHH
Confidence 1223333 55666677788999999999999999999987766666777
Q ss_pred HhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCCCCC-ccceeE
Q 022515 122 HKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFEAIS-PADAVL 194 (296)
Q Consensus 122 ~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~~~p-~~D~v~ 194 (296)
+.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ ..+|++|+.+|+++++| +||+|+
T Consensus 163 ~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~ 240 (332)
T 3i53_A 163 AKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYV 240 (332)
T ss_dssp GSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEE
T ss_pred HhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEE
Confidence 7777 66778999999999999999999999999999999999988875 35899999999998777 799999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY 274 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~ 274 (296)
+++++|+|+++++.++|++++++|+| ||+++|.|...++. .. ...+++.|+...+++.||.++|.+++++
T Consensus 241 ~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~------~~~~d~~~~~~~~~~~~t~~e~~~ll~~ 310 (332)
T 3i53_A 241 LSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE-HA------GTGMDLRMLTYFGGKERSLAELGELAAQ 310 (332)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC----C------CHHHHHHHHHHHSCCCCCHHHHHHHHHH
T ss_pred EehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC-Cc------cHHHHHHHHhhCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999 99999999887765 21 1467888887789999999999999999
Q ss_pred cCCceeEEEEcCCcceEEEEeC
Q 022515 275 AGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 275 aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
+||+++++.+.++ .++||+++
T Consensus 311 aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 311 AGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp TTEEEEEEEECSS-SEEEEEEE
T ss_pred CCCEEEEEEECCC-cEEEEEee
Confidence 9999999999988 99999985
No 7
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=1.9e-42 Score=310.68 Aligned_cols=291 Identities=49% Similarity=0.917 Sum_probs=239.2
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCC---Ccchhh---------
Q 022515 2 NLIDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTIN---PSKSRC--------- 69 (296)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~---~~~l~~--------- 69 (296)
|-|...++++++++...+++++.|++.+++|++++++|||++|++.++|.|++|||+++|++ ++.++|
T Consensus 3 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~g 82 (352)
T 1fp2_A 3 SSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNG 82 (352)
T ss_dssp -----CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTT
T ss_pred ccccCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCC
Confidence 56778888999999999999999999999999999999999998633599999999999996 444544
Q ss_pred ----------------------------------------------hHHHhhh-cCCCChhhhhcCCCchhhcccCchHH
Q 022515 70 ----------------------------------------------QLRTWFQ-NDDPTPFDTAHGKTLWEYAGDEPKLN 102 (296)
Q Consensus 70 ----------------------------------------------~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~ 102 (296)
.|.++++ ++. ++|...+|.++|+++.++|+..
T Consensus 83 ll~~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~ 161 (352)
T 1fp2_A 83 FFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYN 161 (352)
T ss_dssp SEEEEESSSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHH
T ss_pred eEEEecCCCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHH
Confidence 1222233 332 5666667778899999999999
Q ss_pred HHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEecc
Q 022515 103 NFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGD 182 (296)
Q Consensus 103 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D 182 (296)
..|...|........+. ++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ ..+++++.+|
T Consensus 162 ~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d 239 (352)
T 1fp2_A 162 TSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG-SNNLTYVGGD 239 (352)
T ss_dssp HHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-BTTEEEEECC
T ss_pred HHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc-CCCcEEEecc
Confidence 99999999888776666 777732377889999999999999999999999999999999999999984 4569999999
Q ss_pred CCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccc
Q 022515 183 MFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTE 262 (296)
Q Consensus 183 ~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 262 (296)
+++++|+||+|+++++||+|+++++.++|++++++|+|.++||+++|.|...++....+........+++.|+. .+++.
T Consensus 240 ~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~g~~ 318 (352)
T 1fp2_A 240 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKE 318 (352)
T ss_dssp TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCC
T ss_pred ccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-ccCCC
Confidence 99877789999999999999999999999999999997112799999999887654321011233467777776 56889
Q ss_pred cCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 263 RDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 263 rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
|+.++|.++++++||+++++.+.++..++||++|
T Consensus 319 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 319 RNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp EEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 9999999999999999999999888889999987
No 8
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.1e-42 Score=307.19 Aligned_cols=269 Identities=23% Similarity=0.357 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHH---------------------
Q 022515 14 EAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLR--------------------- 72 (296)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~--------------------- 72 (296)
.+...+++++.|++.+++|++++++|||++|.+ +|.|++|||+++|++++.++|.|+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~ 84 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANTPT 84 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEecCHH
Confidence 677899999999999999999999999999986 799999999999999999888221
Q ss_pred ------------------------------HhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhchHHHHH
Q 022515 73 ------------------------------TWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIH 122 (296)
Q Consensus 73 ------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~ 122 (296)
++++++. ++|+..+|.++|+++.++|+....|.+.| .........+++
T Consensus 85 s~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~ 162 (334)
T 2ip2_A 85 SHLLRDVEGSFRDMVLFYGEEFHAAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPR 162 (334)
T ss_dssp HHTTSSSTTCSHHHHHHHTTHHHHHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHH
T ss_pred HHHHhCCCccHHHHHHHhcCchhhHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1122232 56666667788999999999999999999 887777788888
Q ss_pred hcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCCCCC-ccceeEe
Q 022515 123 KCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFEAIS-PADAVLL 195 (296)
Q Consensus 123 ~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~~~p-~~D~v~~ 195 (296)
.++ +++ .+|||||||+|.++..+++++|+.+++++|+|.+++.+++ ..+|++++.+|+++++| +||+|++
T Consensus 163 ~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~ 239 (334)
T 2ip2_A 163 LLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLL 239 (334)
T ss_dssp HSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEE
T ss_pred hCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEE
Confidence 887 666 9999999999999999999999999999999888888875 25799999999998766 4999999
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA 275 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a 275 (296)
.+++|+|+++++.++|++++++|+| ||+++|.|...++.... .....+++.|+...+|+.|+.++|.++++++
T Consensus 240 ~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 312 (334)
T 2ip2_A 240 SRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAGRHRTTEEVVDLLGRG 312 (334)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHT
T ss_pred chhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCCcCCCHHHHHHHHHHC
Confidence 9999999999999999999999999 99999999887765332 2345778888777789999999999999999
Q ss_pred CCceeEEEEcCCcceEEEEeC
Q 022515 276 GFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 276 Gf~~~~~~~~~~~~~vi~~~~ 296 (296)
||+++++.+.++..++|+++|
T Consensus 313 Gf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 313 GFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp TEEEEEEEEETTTEEEEEEEE
T ss_pred CCceeEEEECCCCCEEEEEEe
Confidence 999999999988899999985
No 9
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=2.8e-41 Score=303.83 Aligned_cols=289 Identities=50% Similarity=0.901 Sum_probs=238.0
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCC---CcchhhhHH----------
Q 022515 6 GDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTIN---PSKSRCQLR---------- 72 (296)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~---~~~l~~~l~---------- 72 (296)
|.+.++++++...+++++.|++.+++|++|+++|||++|++.++|.|++|||+++|++ ++.++|.|+
T Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~ 80 (358)
T 1zg3_A 1 GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAK 80 (358)
T ss_dssp CTTTSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEE
T ss_pred CCchHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEE
Confidence 3455788899999999999999999999999999999998633599999999999995 444444222
Q ss_pred -----------------------------------------------------HhhhcCC-CChhhhhcCCCchhhcccC
Q 022515 73 -----------------------------------------------------TWFQNDD-PTPFDTAHGKTLWEYAGDE 98 (296)
Q Consensus 73 -----------------------------------------------------~~~~~~~-~~~~~~~~g~~~~~~~~~~ 98 (296)
++++++. .++|+.++|.++|+++.++
T Consensus 81 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~ 160 (358)
T 1zg3_A 81 TIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKD 160 (358)
T ss_dssp EEECCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSG
T ss_pred ecccccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcC
Confidence 1122221 1455555667789999999
Q ss_pred chHHH--HHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCe
Q 022515 99 PKLNN--FFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANL 176 (296)
Q Consensus 99 ~~~~~--~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri 176 (296)
|+... .|.+.|........ .+++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ ..++
T Consensus 161 p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v 238 (358)
T 1zg3_A 161 SESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-NENL 238 (358)
T ss_dssp GGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC-CSSE
T ss_pred hhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc-CCCc
Confidence 99988 99999998776665 78888832367788999999999999999999999999999999999998884 4569
Q ss_pred eEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh
Q 022515 177 KYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV 256 (296)
Q Consensus 177 ~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (296)
+++.+|+++++|.||+|+++++||+|+++++.++|++++++|+|.++||+++|.|...++....+........+++.|+.
T Consensus 239 ~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~ 318 (358)
T 1zg3_A 239 NFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLT 318 (358)
T ss_dssp EEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHH
T ss_pred EEEeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhc
Confidence 99999999977789999999999999999999999999999996111699999999887654321011234577888877
Q ss_pred hcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 257 LLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 257 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
..+|+.||.++|.++++++||+++++.+.++..++||++|
T Consensus 319 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 319 MFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp HHSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred cCCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 7789999999999999999999999999888889999987
No 10
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=2.3e-41 Score=304.88 Aligned_cols=282 Identities=17% Similarity=0.214 Sum_probs=226.1
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhh----------------
Q 022515 6 GDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRC---------------- 69 (296)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~---------------- 69 (296)
.+.+.+.+++...+++++.|++.+++|++++++|||++|++.++|+|++|||+++|++++.++|
T Consensus 6 ~~~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~~~ 85 (363)
T 3dp7_A 6 TKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLEED 85 (363)
T ss_dssp CCSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETT
T ss_pred ccCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEecCC
Confidence 3455678899999999999999999999999999999998644799999999999999999888
Q ss_pred ---------------------------------hHHHhhhcCCCChhhhhcC--CCchhhcccCchHHH----HHHHHHH
Q 022515 70 ---------------------------------QLRTWFQNDDPTPFDTAHG--KTLWEYAGDEPKLNN----FFNEAMA 110 (296)
Q Consensus 70 ---------------------------------~l~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~----~f~~~m~ 110 (296)
.|.+++++++ +++...+| .++|+++.++|+... .|...|.
T Consensus 86 ~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 164 (363)
T 3dp7_A 86 RYVLAKAGWFLLNDKMARVNMEFNHDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYS 164 (363)
T ss_dssp EEEECHHHHHHHHCHHHHHHHHHHHHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTT
T ss_pred EEecccchHHhhCCCcccchheeecHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhh
Confidence 3334455565 56767777 589999999988665 3556555
Q ss_pred ccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCC
Q 022515 111 SDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMF 184 (296)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~ 184 (296)
... ...++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.|++ ..+|++++.+|++
T Consensus 165 ~~~---~~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 239 (363)
T 3dp7_A 165 DQS---FGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLL 239 (363)
T ss_dssp CCC---CHHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCC
T ss_pred hhh---HHHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEcccc
Confidence 432 223444443 35678999999999999999999999999999999999988875 2468999999999
Q ss_pred CC---CC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc-hhhhhhhhhhhhhhhcC
Q 022515 185 EA---IS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK-SIETQLFFDMLMMVLLT 259 (296)
Q Consensus 185 ~~---~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 259 (296)
++ +| +||+|+++++||+|+++++.++|++++++|+| ||+++|.|.+.++...... +.......++.++...+
T Consensus 240 ~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (363)
T 3dp7_A 240 DRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGN 316 (363)
T ss_dssp SSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSS
T ss_pred ccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCC
Confidence 84 56 59999999999999999999999999999999 9999999988876533210 00001122333344456
Q ss_pred ccccCHHHHHHHHHhcCCceeEEEEcCC-cceEEEEeC
Q 022515 260 GTERDEKEWTKLFTYAGFSDYKIIPILG-LRSLIEVYP 296 (296)
Q Consensus 260 g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~ 296 (296)
++.||.+||.++|+++||+++++.+..+ ..++|+++|
T Consensus 317 ~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 317 SKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp CCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred CcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 8899999999999999999999997654 488999875
No 11
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=3.6e-40 Score=298.01 Aligned_cols=282 Identities=32% Similarity=0.571 Sum_probs=222.1
Q ss_pred hhhhhHHHHHHH--HHHHHHHHHHHHHHHHHcCcchhcccCCC-C---CCHHHHHHHcCC------CCcchhhhHHHh--
Q 022515 9 DTELLEAQTHVW--NHIFNFINSMTLKCAIQLGIPDIISKHGK-P---MTLNELVSALTI------NPSKSRCQLRTW-- 74 (296)
Q Consensus 9 ~~~~~~~~~~~~--~~~~g~~~~~~l~~a~~l~lf~~L~~~~~-~---~t~~eLA~~~~~------~~~~l~~~l~~~-- 74 (296)
.++.+++...++ +++.|++.+++|++|++||||++|++. + | .|++|||+++|+ +++.++|.|+..
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~-g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~ 94 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKA-TPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLAS 94 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTC-SSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhc-CCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhh
Confidence 346777888888 999999999999999999999999863 4 6 999999999999 445555533211
Q ss_pred ------------------------------------------------------------hhcCCCChhhhhcCCCchhh
Q 022515 75 ------------------------------------------------------------FQNDDPTPFDTAHGKTLWEY 94 (296)
Q Consensus 75 ------------------------------------------------------------~~~~~~~~~~~~~g~~~~~~ 94 (296)
++++..++|+..+|.++|++
T Consensus 95 ~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~ 174 (372)
T 1fp1_D 95 YSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEF 174 (372)
T ss_dssp TTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------C
T ss_pred CCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHH
Confidence 11220134444445677888
Q ss_pred cccCchHHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCC
Q 022515 95 AGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLA 174 (296)
Q Consensus 95 ~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 174 (296)
+.++|+....|.+.|..........+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.++ ...
T Consensus 175 ~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~-~~~ 252 (372)
T 1fp1_D 175 MGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP-PLS 252 (372)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCT
T ss_pred HHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhh-hcC
Confidence 8899999999999998887777778888875 25677899999999999999999999999999999999999988 456
Q ss_pred CeeEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh
Q 022515 175 NLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM 254 (296)
Q Consensus 175 ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 254 (296)
+++++.+|+++++|.||+|+++++||+|+++++.++|++++++|+| ||+++|.|...++....+........+++.|
T Consensus 253 ~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~ 329 (372)
T 1fp1_D 253 GIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLM 329 (372)
T ss_dssp TEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred CCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHHHHHhhHHH
Confidence 7999999999877779999999999999999999999999999999 9999999998876543311111345677777
Q ss_pred hhhcCccccCHHHHHHHHHhcCCceeEEEEc-CCcceEEEEeC
Q 022515 255 MVLLTGTERDEKEWTKLFTYAGFSDYKIIPI-LGLRSLIEVYP 296 (296)
Q Consensus 255 ~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 296 (296)
+...+++.|+.++|.++++++||+++++.+. .+..+|||++|
T Consensus 330 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 330 FITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 7656789999999999999999999999984 55249999987
No 12
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=1.8e-38 Score=285.69 Aligned_cols=270 Identities=24% Similarity=0.405 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhh-------------------
Q 022515 15 AQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWF------------------- 75 (296)
Q Consensus 15 ~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~------------------- 75 (296)
...++++++.|++.+++|.+++++|||++|.+ +|.|++|||+++|++++.++|.|+...
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s 96 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVG 96 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECTTG
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEeCHHH
Confidence 35688999999999999999999999999975 799999999999999999888333221
Q ss_pred -----------------------------------hcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhchHHH
Q 022515 76 -----------------------------------QNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVM 120 (296)
Q Consensus 76 -----------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~ 120 (296)
+++. ++|+..+|.++|+++..+|+....|...|..........+
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l 175 (360)
T 1tw3_A 97 ELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAP 175 (360)
T ss_dssp GGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHH
T ss_pred HHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHH
Confidence 1121 3334444567888888888888899999998887777888
Q ss_pred HHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCCCCCc-ccee
Q 022515 121 IHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFEAISP-ADAV 193 (296)
Q Consensus 121 ~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~~~p~-~D~v 193 (296)
++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ ..++++++.+|+++++|. ||+|
T Consensus 176 ~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v 253 (360)
T 1tw3_A 176 AAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAI 253 (360)
T ss_dssp HHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEE
T ss_pred HHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEE
Confidence 88887 77889999999999999999999999999999999888888765 346899999999986664 9999
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee-eCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHH
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI-RENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLF 272 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 272 (296)
++.+++|+|+++++.++|++++++|+| ||+++|.|.. .++.... .....+++.|+...+++.++.++|.+++
T Consensus 254 ~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~e~~~ll 326 (360)
T 1tw3_A 254 ILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFN----EQFTELDLRMLVFLGGALRTREKWDGLA 326 (360)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHHSCCCCBHHHHHHHH
T ss_pred EEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCCCCc----chhhhccHHHhhhcCCcCCCHHHHHHHH
Confidence 999999999999989999999999999 9999999988 5543221 2335677777766789999999999999
Q ss_pred HhcCCceeEEEEcCCc-----ceEEEEeC
Q 022515 273 TYAGFSDYKIIPILGL-----RSLIEVYP 296 (296)
Q Consensus 273 ~~aGf~~~~~~~~~~~-----~~vi~~~~ 296 (296)
+++||+++++.+.++. .++|+++|
T Consensus 327 ~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 327 ASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred HHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 9999999999988765 78999875
No 13
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=7.5e-39 Score=289.50 Aligned_cols=275 Identities=22% Similarity=0.345 Sum_probs=224.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh-----c---C--C-
Q 022515 11 ELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ-----N---D--D- 79 (296)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~-----~---~--~- 79 (296)
...+....+++++.|++.+++|++++++|||++|.+ +|.|++|||+++|++++.++|.|+.... . + .
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y 89 (374)
T 1qzz_A 12 PTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPL 89 (374)
T ss_dssp CCHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCC
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEE
Confidence 345567789999999999999999999999999975 7999999999999999998884443221 0 1 0
Q ss_pred --------------------------------------------CChhhhhcCCCchhhcccCchHHHHHHHHHHccchh
Q 022515 80 --------------------------------------------PTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWL 115 (296)
Q Consensus 80 --------------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~ 115 (296)
.++|...+|.++|+++..+++....|...|......
T Consensus 90 ~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 169 (374)
T 1qzz_A 90 RPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDL 169 (374)
T ss_dssp EECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTT
T ss_pred EEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHh
Confidence 012222334567777777888888888888887777
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCCCCCc
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFEAISP 189 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~~~p~ 189 (296)
....+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ ..++++++.+|+++++|.
T Consensus 170 ~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 247 (374)
T 1qzz_A 170 AYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPV 247 (374)
T ss_dssp TTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCC
Confidence 7788888887 67789999999999999999999999999999999888888775 346899999999986664
Q ss_pred -cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee--eeCCCCCCCchhhhhhhhhhhhhhhcCccccCHH
Q 022515 190 -ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM--IRENKKGDDKSIETQLFFDMLMMVLLTGTERDEK 266 (296)
Q Consensus 190 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~ 266 (296)
||+|++.+++|+|+++++.++|++++++|+| ||+++|.|. ..++.... .....+++.|+...+++.++.+
T Consensus 248 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 320 (374)
T 1qzz_A 248 TADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLRMLTFMGGRVRTRD 320 (374)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHHHHHHHSCCCCCHH
T ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchHHHHhCCCcCCCHH
Confidence 9999999999999999888999999999999 999999998 76543221 2345677777777789999999
Q ss_pred HHHHHHHhcCCceeEEEEcCCcc-----eEEEEeC
Q 022515 267 EWTKLFTYAGFSDYKIIPILGLR-----SLIEVYP 296 (296)
Q Consensus 267 e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~ 296 (296)
+|.++++++||+++++.+.++.. ++|++++
T Consensus 321 ~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 321 EVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 99999999999999999988776 8999874
No 14
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=4.9e-38 Score=281.96 Aligned_cols=270 Identities=17% Similarity=0.212 Sum_probs=212.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhh-----------------
Q 022515 13 LEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWF----------------- 75 (296)
Q Consensus 13 ~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~----------------- 75 (296)
++....+++++.|++.+++|++|+++|||++|. +|.|++|||+++|++++.++|.|+...
T Consensus 22 l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~~~y~~t~~ 98 (352)
T 3mcz_A 22 LTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGMVEGKAAILLHALAALGLLTKEGDAFRNTAL 98 (352)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecCCeeecCHH
Confidence 344445999999999999999999999999996 399999999999999999988443221
Q ss_pred -----hcCCCC---hhhh----------------hcCCCc----hhhcccCchHHHHHHHHHHccchhchHHHHHhcccc
Q 022515 76 -----QNDDPT---PFDT----------------AHGKTL----WEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDV 127 (296)
Q Consensus 76 -----~~~~~~---~~~~----------------~~g~~~----~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~ 127 (296)
.++.+. ++.. ..|.+. ..++.++++....|...|...... ...+++.++
T Consensus 99 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~f~~~~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-- 175 (352)
T 3mcz_A 99 TERYLTTTSADYIGPIVEHQYLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-- 175 (352)
T ss_dssp HHHHHSTTCTTCCHHHHHHHHTTTTTGGGHHHHHTCSSCCTTSHHHHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG--
T ss_pred HHhhccCCChhhHHHHHHHhHHHHHHHHHHHHHHhCCCCCCcccccccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC--
Confidence 111110 0000 011111 123356777788899888873322 236788887
Q ss_pred cCC-CCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-C--CCc-cceeEeh
Q 022515 128 FEG-LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-A--ISP-ADAVLLK 196 (296)
Q Consensus 128 ~~~-~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~--~p~-~D~v~~~ 196 (296)
+.+ ..+|||||||+|.++..+++++|+.+++++|+|.+++.+++ ..+|++++.+|+++ + .++ ||+|+++
T Consensus 176 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 255 (352)
T 3mcz_A 176 VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLN 255 (352)
T ss_dssp GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEe
Confidence 556 89999999999999999999999999999999888887765 35789999999998 4 554 9999999
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhc-CccccCHHHHHHHHHhc
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLL-TGTERDEKEWTKLFTYA 275 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~rt~~e~~~ll~~a 275 (296)
+++|+|+++++.++|++++++|+| ||+++|.|.+.++....+ ....++++.|+..+ +++.|+.++|+++++++
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 329 (352)
T 3mcz_A 256 DCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWIAGVVRDA 329 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHHHHHHHHC
Confidence 999999999999999999999999 999999999888765432 33467888887655 78999999999999999
Q ss_pred CCceeEEEEcCCcceEEEEeC
Q 022515 276 GFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 276 Gf~~~~~~~~~~~~~vi~~~~ 296 (296)
||++++.. .+...++.++|
T Consensus 330 Gf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 330 GLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp TCEEEEEE--ETTEEEEEEEC
T ss_pred CCceeeec--cCceEEEEEec
Confidence 99999843 24577777765
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=4.6e-37 Score=276.40 Aligned_cols=274 Identities=21% Similarity=0.376 Sum_probs=224.8
Q ss_pred chhhhhHHHHHHHHHHH-HHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHh------------
Q 022515 8 HDTELLEAQTHVWNHIF-NFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTW------------ 74 (296)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~------------ 74 (296)
++++++++..++++++. |++.+++|++++++|||++|++ +|.|++|||+++|++++.++|.|+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~ 100 (359)
T 1x19_A 23 SNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGK 100 (359)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred CccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeCCe
Confidence 45577888889999996 8999999999999999999986 79999999999999999998844332
Q ss_pred ----------hhcCCC---C---hhhh-----------------hcCCCchhhcccCch---HHHHHHHHHHccch-hch
Q 022515 75 ----------FQNDDP---T---PFDT-----------------AHGKTLWEYAGDEPK---LNNFFNEAMASDAW-LAT 117 (296)
Q Consensus 75 ----------~~~~~~---~---~~~~-----------------~~g~~~~~~~~~~~~---~~~~f~~~m~~~~~-~~~ 117 (296)
+..+.+ . ++.. ..|.+ |+++.++|+ ....|...|..... ...
T Consensus 101 y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~-~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~ 179 (359)
T 1x19_A 101 WSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKN-FKGQVPYPPVTREDNLYFEEIHRSNAKFAI 179 (359)
T ss_dssp EEECHHHHHHSSSSCSBTTBCCHHHHHHHHHHHHHTGGGHHHHHTTSCC-CCCSSCSSCCSHHHHHHHHHHHHTTCHHHH
T ss_pred EecCHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcccccCchhhHHHHHHHHHHHHhccchhH
Confidence 222211 0 0000 01233 778888888 88999999999887 777
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCCcc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AISPA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~ 190 (296)
..+++.++ +.+..+|||||||+|.++..+++++|+.+++++|+|.+++.+++ ..+|++++.+|+++ +.+++
T Consensus 180 ~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 257 (359)
T 1x19_A 180 QLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA 257 (359)
T ss_dssp HHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC
Confidence 88888888 77889999999999999999999999999999999889988875 35689999999998 66678
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh-cCccc----cCH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL-LTGTE----RDE 265 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~----rt~ 265 (296)
|+|++.+++|+|+++++.++|++++++|+| ||+++|.|...++. ..+ .....+ .|+.. .++++ ++.
T Consensus 258 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~~---~~~~~~--~~~~~~~~g~~~~~~~t~ 328 (359)
T 1x19_A 258 DAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDP-ENP---NFDYLS--HYILGAGMPFSVLGFKEQ 328 (359)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCT-TSC---CHHHHH--HHGGGGGSSCCCCCCCCG
T ss_pred CEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCC-CCc---hHHHHH--HHHHhcCCCCcccCCCCH
Confidence 999999999999999899999999999999 99999999887765 221 122223 33333 34667 899
Q ss_pred HHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 266 KEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 266 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
++|.++++++||+++++.+.+ ..++|+++|
T Consensus 329 ~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 329 ARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp GGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 999999999999999999987 778999876
No 16
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=4.1e-37 Score=274.01 Aligned_cols=271 Identities=19% Similarity=0.255 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHH----------------------h
Q 022515 17 THVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRT----------------------W 74 (296)
Q Consensus 17 ~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~----------------------~ 74 (296)
..+++++.|++.+++|++++++|||++|++ +|.|++|||+++|++++.++|.|+. +
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~~~~y~~t~~~~~~ 85 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQAEGYRLTSDSAMF 85 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEecCCEEecCHHHHHH
Confidence 578999999999999999999999999986 7999999999999999999884432 2
Q ss_pred hhcCCCC---hh---------hhh---------cCC-Cc--hhhcccCchHHHHHHHHHHccchhchHHHHHhcccccCC
Q 022515 75 FQNDDPT---PF---------DTA---------HGK-TL--WEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEG 130 (296)
Q Consensus 75 ~~~~~~~---~~---------~~~---------~g~-~~--~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~ 130 (296)
+.++.+. ++ ... .|. .+ |+++.++++....|...|..........+++.+++.+.+
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (335)
T 2r3s_A 86 LDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIE 165 (335)
T ss_dssp TCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCSTTTGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHTC--CC
T ss_pred hccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCCCcccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcccccCC
Confidence 2221110 00 000 021 22 677778888888999999888777777788888721177
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCCc-cceeEehhhhccC
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AISP-ADAVLLKWILHDW 202 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p~-~D~v~~~~vlh~~ 202 (296)
..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ ..+|++++.+|+++ +.++ ||+|++++++|+|
T Consensus 166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~ 245 (335)
T 2r3s_A 166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHF 245 (335)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGS
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccC
Confidence 89999999999999999999999999999999988888775 35689999999998 6664 9999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhc-CccccCHHHHHHHHHhcCCceeE
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLL-TGTERDEKEWTKLFTYAGFSDYK 281 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~rt~~e~~~ll~~aGf~~~~ 281 (296)
+++++.++|++++++|+| ||+++|.|...++....+ .....+++.|+... +++.++.++|.++++++||+.++
T Consensus 246 ~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~ 319 (335)
T 2r3s_A 246 DVATCEQLLRKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQ 319 (335)
T ss_dssp CHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeee
Confidence 999999999999999999 999999998877654332 33456777777766 78999999999999999999999
Q ss_pred EEEcCCcceEEEEe
Q 022515 282 IIPILGLRSLIEVY 295 (296)
Q Consensus 282 ~~~~~~~~~vi~~~ 295 (296)
+.+.++..++|+++
T Consensus 320 ~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 320 LHSLPTTQQQVIVA 333 (335)
T ss_dssp EECCTTSSSEEEEE
T ss_pred EEECCCCceeEEEe
Confidence 99988777877775
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.88 E-value=3.8e-22 Score=171.16 Aligned_cols=157 Identities=17% Similarity=0.243 Sum_probs=121.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCCccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AISPADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~D~v~~~~ 197 (296)
.+++.+|||||||+|.++..+++++ |+++++++|+ +.|++.|++ ...+|+++++|+.+ +.+++|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4677899999999999999999975 6789999999 999998876 45789999999998 777899999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhh--hhcC----------------
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMM--VLLT---------------- 259 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------------- 259 (296)
+||++++++...+|++++++|+| ||++++.|....+.... ...+.+++.. ...|
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~-----~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~ 219 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKV-----GELLFNMHHDFKRANGYSELEISQKRSMLENV 219 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHH-----HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHH
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHH-----HHHHHHHHHHHHHHcCCCHHHHHHHHhhhccc
Confidence 99999988888899999999999 99999999876553211 0011111100 0000
Q ss_pred ccccCHHHHHHHHHhcCCceeEEEE-cCCcceEE
Q 022515 260 GTERDEKEWTKLFTYAGFSDYKIIP-ILGLRSLI 292 (296)
Q Consensus 260 g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi 292 (296)
-...|.+++.++|++|||+.++++- ..++.++|
T Consensus 220 ~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~i 253 (261)
T 4gek_A 220 MLTDSVETHKARLHKAGFEHSELWFQCFNFGSLV 253 (261)
T ss_dssp CCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEE
T ss_pred ccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEE
Confidence 1235889999999999999988753 44455544
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.85 E-value=1.6e-20 Score=158.30 Aligned_cols=172 Identities=15% Similarity=0.195 Sum_probs=127.0
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC-ccce
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS-PADA 192 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p-~~D~ 192 (296)
.++..+. ...++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+
T Consensus 34 ~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 34 VSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 3444443 134668999999999999999999999999999999 999988876 33489999999998 544 5999
Q ss_pred eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh-------------hhhcC
Q 022515 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM-------------MVLLT 259 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 259 (296)
|++..++|++++++...+|++++++|+| ||++++.+...++....... ....+..... .....
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKL 188 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----C
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhccc
Confidence 9999999999998877899999999999 99999999876543211000 0000100000 00012
Q ss_pred ccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515 260 GTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY 295 (296)
Q Consensus 260 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 295 (296)
...++.+++.++|++|||+++++.......+++..+
T Consensus 189 ~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 224 (234)
T 3dtn_A 189 DKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGR 224 (234)
T ss_dssp CCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred ccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEE
Confidence 344588999999999999999988776555555443
No 19
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.81 E-value=4.2e-19 Score=147.90 Aligned_cols=156 Identities=16% Similarity=0.198 Sum_probs=125.5
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS- 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p- 188 (296)
..++..+. ..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ...++++..+|+.+ +.+
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 45555555 6677899999999999999999987 8889999999 999988876 33589999999988 544
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 267 (296)
.||+|++..++|++++. ..+|++++++|+| ||++++.+..........+ ....++.++
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~ 163 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGPP----------------PEEVYSEWE 163 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSCC----------------GGGSCCHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCCc----------------hhcccCHHH
Confidence 49999999999999875 4889999999999 9999999876554322210 012348999
Q ss_pred HHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 268 WTKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
|.++++++||+++++.........+.+++
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999999988877666666553
No 20
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.80 E-value=9e-19 Score=150.87 Aligned_cols=158 Identities=20% Similarity=0.167 Sum_probs=123.2
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS 188 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p 188 (296)
...+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 50 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 50 TDEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 345566666 6678899999999999999999987 689999999 899888765 35689999999988 654
Q ss_pred --ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHH
Q 022515 189 --PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEK 266 (296)
Q Consensus 189 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~ 266 (296)
.||+|++..++||+++. ..+|++++++|+| ||++++.+......... .....++........+...+.+
T Consensus 127 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
T 3bus_A 127 DASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEG----AKKEAVDAFRAGGGVLSLGGID 197 (273)
T ss_dssp TTCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCH----HHHHHHHHHHHHHTCCCCCCHH
T ss_pred CCCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCCh----hHHHHHHHHHhhcCccCCCCHH
Confidence 49999999999999876 4889999999999 99999999876543221 1111122111112345677999
Q ss_pred HHHHHHHhcCCceeEEEEcC
Q 022515 267 EWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 267 e~~~ll~~aGf~~~~~~~~~ 286 (296)
+|.++++++||+++++...+
T Consensus 198 ~~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 198 EYESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHcCCeEEEEEECc
Confidence 99999999999999887653
No 21
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.80 E-value=1.1e-18 Score=145.46 Aligned_cols=163 Identities=13% Similarity=0.150 Sum_probs=122.1
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCC-ccceeE
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AIS-PADAVL 194 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p-~~D~v~ 194 (296)
.+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|+
T Consensus 36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~ 111 (220)
T 3hnr_A 36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIV 111 (220)
T ss_dssp HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEE
T ss_pred HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEE
Confidence 4455554 457789999999999999999987 679999999 999998876 33689999999998 554 599999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh--------hhhcCccccCHH
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM--------MVLLTGTERDEK 266 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~rt~~ 266 (296)
+..++|++++++...+|++++++|+| ||.+++.+........ ......... .........+.+
T Consensus 112 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDA------YDKTVEAAKQRGFHQLANDLQTEYYTRIP 182 (220)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHH------HHHHHHHHHHTTCHHHHHHHHHSCCCBHH
T ss_pred ECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHH------HHHHHHHHHhCCCccchhhcchhhcCCHH
Confidence 99999999998877799999999999 9999999865543211 000110000 000011234889
Q ss_pred HHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515 267 EWTKLFTYAGFSDYKIIPILGLRSLIEVY 295 (296)
Q Consensus 267 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 295 (296)
+|.++++++||+++.+.. ....+++.++
T Consensus 183 ~~~~~l~~aGf~v~~~~~-~~~~w~~~~~ 210 (220)
T 3hnr_A 183 VMQTIFENNGFHVTFTRL-NHFVWVMEAT 210 (220)
T ss_dssp HHHHHHHHTTEEEEEEEC-SSSEEEEEEE
T ss_pred HHHHHHHHCCCEEEEeec-cceEEEEeeh
Confidence 999999999998776544 4566777665
No 22
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.80 E-value=2.3e-19 Score=149.03 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=120.2
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS- 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p- 188 (296)
..+++.++ .++. +|||||||+|.++..+++. |+.+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 34444444 3344 9999999999999999998 8889999999 999988876 35689999999998 655
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhh-hhh----hhhhhhcCccc
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQL-FFD----MLMMVLLTGTE 262 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~g~~ 262 (296)
.||+|++..++|++++.. .+|++++++|+| ||++++.+...+..... .... ... +..........
T Consensus 110 ~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 180 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDVA--TAFREIYRILKS---GGKTYIGGGFGNKELRD----SISAEMIRKNPDWKEFNRKNISQ 180 (219)
T ss_dssp TCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEECCSSHHHHH----HHHHHHHHHCTTHHHHHHHHSSH
T ss_pred ccccEEEECchHhhccCHH--HHHHHHHHhCCC---CCEEEEEeccCcHHHHH----HHHHHHHHhHHHHHhhhhhcccc
Confidence 499999999999997654 789999999999 99999887543321000 0000 000 00000012334
Q ss_pred cCHHHHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515 263 RDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY 295 (296)
Q Consensus 263 rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 295 (296)
++.++|.++|+++||+++++.......+++..+
T Consensus 181 ~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 181 ENVERFQNVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred CCHHHHHHHHHHcCCCeEEEEecCCceEEEEec
Confidence 488999999999999999998876665555443
No 23
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.79 E-value=1.4e-18 Score=148.78 Aligned_cols=156 Identities=15% Similarity=0.260 Sum_probs=123.2
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--cc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~ 190 (296)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .|
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 45555555 6678899999999999999999987 789999999 899988876 22799999999988 554 49
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK 270 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 270 (296)
|+|++..++||+++++...+|++++++|+| ||++++.+...+...... . .+.. .....+...++.++|.+
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD---D---EFKE-YVKQRKYTLITVEEYAD 191 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC---H---HHHH-HHHHHTCCCCCHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch---H---HHHH-HHhcCCCCCCCHHHHHH
Confidence 999999999999877788999999999999 999999998766521110 1 1111 01112345669999999
Q ss_pred HHHhcCCceeEEEEcC
Q 022515 271 LFTYAGFSDYKIIPIL 286 (296)
Q Consensus 271 ll~~aGf~~~~~~~~~ 286 (296)
+++++||+++++....
T Consensus 192 ~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 192 ILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEeCC
Confidence 9999999999887653
No 24
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.79 E-value=1.7e-19 Score=150.99 Aligned_cols=161 Identities=12% Similarity=0.082 Sum_probs=117.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhhc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWILH 200 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh 200 (296)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 3478999999999999999999876 9999999 999988876 34889999999988 544 499999999988
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh---cC------------------
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL---LT------------------ 259 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------ 259 (296)
++..++..++|++++++|+| ||++++.+...+...... ...........+... ..
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVR 190 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEE
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheee
Confidence 77777778999999999999 999998876532210000 000000000000000 00
Q ss_pred ccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 260 GTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 260 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
...++ .++.++|+++||+.+++..++....+|+.+|
T Consensus 191 ~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 191 FNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp EECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 11112 4899999999999999999988888999876
No 25
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.78 E-value=9.6e-19 Score=149.73 Aligned_cols=155 Identities=16% Similarity=0.313 Sum_probs=118.6
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS 188 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p 188 (296)
....+++.+. ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ...+++++.+|+.+ +++
T Consensus 25 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 25 DLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp CHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence 3455666655 56788999999999999999999875 9999999 999988875 23689999999988 665
Q ss_pred --ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh--cCccccC
Q 022515 189 --PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL--LTGTERD 264 (296)
Q Consensus 189 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~rt 264 (296)
.||+|++..++|++++.. .+|++++++|+| ||++++.+...+... ....++....... .....++
T Consensus 101 ~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 169 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLVDNSAPEND------AFDVFYNYVEKERDYSHHRAWK 169 (260)
T ss_dssp TTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEBCSSH------HHHHHHHHHHHHHCTTCCCCCB
T ss_pred CCCEEEEEEhhhhHhcCCHH--HHHHHHHHHcCC---CCEEEEEEcCCCCCH------HHHHHHHHHHHhcCccccCCCC
Confidence 499999999999999865 889999999999 999999887665431 1111222111111 1335678
Q ss_pred HHHHHHHHHhcCCceeEEEEc
Q 022515 265 EKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~~~~~ 285 (296)
.++|.++|+++||+++.+...
T Consensus 170 ~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 170 KSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEEe
Confidence 999999999999998877654
No 26
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.78 E-value=7.3e-19 Score=150.72 Aligned_cols=164 Identities=17% Similarity=0.135 Sum_probs=117.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccceeEehh-hhccCC
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADAVLLKW-ILHDWN 203 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~v~~~~-vlh~~~ 203 (296)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++.. ++|+++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 3456899999999999999999884 48999999 99999987644589999999998 544 599999998 999997
Q ss_pred c-hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchh------------h--------hhhhhhhhhhhhc-C--
Q 022515 204 D-EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSI------------E--------TQLFFDMLMMVLL-T-- 259 (296)
Q Consensus 204 d-~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~------------~--------~~~~~~~~~~~~~-~-- 259 (296)
+ ++...+|++++++|+| ||++++.+...++........ . ....+++.+.... +
T Consensus 126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 5 4667899999999999 888888654333221110000 0 0000111111110 1
Q ss_pred ---------ccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 260 ---------GTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 260 ---------g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
.+.+|.++|.++|+++||+++++....+...++.++|
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2345899999999999999999877666666666653
No 27
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.78 E-value=2.5e-18 Score=146.57 Aligned_cols=153 Identities=10% Similarity=0.057 Sum_probs=118.2
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS- 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p- 188 (296)
..++..+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 44555555 6678899999999999999999988 679999999 999988865 34689999999988 443
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW 268 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~ 268 (296)
.||+|++..++|++++. .++|++++++|+| ||++++.+.......... . ..... ........++.++|
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~~~ 170 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---E---IAQAC-GVSSTSDFLTLPGL 170 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---H---HHHTT-TCSCGGGSCCHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCCCChH---H---HHHHH-hcccccccCCHHHH
Confidence 49999999999999865 4789999999999 999999998765443221 1 11100 00112245699999
Q ss_pred HHHHHhcCCceeEEEEc
Q 022515 269 TKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 269 ~~ll~~aGf~~~~~~~~ 285 (296)
.++++++||+++++...
T Consensus 171 ~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 171 VGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHCCCeeEEEEeC
Confidence 99999999999887654
No 28
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.78 E-value=4.7e-18 Score=141.15 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=114.5
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCCCCC--ccceeE
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFEAIS--PADAVL 194 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~~~p--~~D~v~ 194 (296)
.+++.+. ...+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+..+ .||+|+
T Consensus 36 ~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 36 AALERLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 3444443 1456679999999999999999998 679999999 999999886 44789999999988432 599999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCc-------cccCHHH
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTG-------TERDEKE 267 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~rt~~e 267 (296)
+..++|++++++...+|++++++|+| ||++++.+...+.......+.. ............+ ...+.++
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQQDDS--EPEVAVRRTLQDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccchhhhc--ccccceeeecCCcchhhHhhcCCCHHH
Confidence 99999999998778999999999999 9999999876532211100000 0000000000111 2349999
Q ss_pred HHHHHHhcCCceeEEEEcC
Q 022515 268 WTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~~~~~ 286 (296)
|.++++++||++......+
T Consensus 188 ~~~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 188 LTERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHHHTTEEEEEEEEET
T ss_pred HHHHHHHCCCEEEeeeccc
Confidence 9999999999955544433
No 29
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.78 E-value=3.7e-18 Score=148.91 Aligned_cols=145 Identities=17% Similarity=0.289 Sum_probs=115.4
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~ 197 (296)
+.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +++ .||+|++..
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 5677899999999999999999987 569999999 899888765 35789999999998 654 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF 277 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf 277 (296)
++||+++. ..+|++++++|+| ||++++.+.......... ....++... ......+.++|.++++++||
T Consensus 159 ~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~l~~aGf 226 (297)
T 2o57_A 159 AFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMGSLGLYRSLAKECGL 226 (297)
T ss_dssp CGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCCCHHHHHHHHHHTTE
T ss_pred hhhhcCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCCCHHHHHHHHHHCCC
Confidence 99999984 5889999999999 999999998766543211 111111111 11234589999999999999
Q ss_pred ceeEEEEc
Q 022515 278 SDYKIIPI 285 (296)
Q Consensus 278 ~~~~~~~~ 285 (296)
+++++...
T Consensus 227 ~~~~~~~~ 234 (297)
T 2o57_A 227 VTLRTFSR 234 (297)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEC
Confidence 99988765
No 30
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.77 E-value=1.2e-18 Score=148.30 Aligned_cols=150 Identities=18% Similarity=0.296 Sum_probs=118.3
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--cc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~ 190 (296)
..+++.+. ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .|
T Consensus 83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 34555555 5577899999999999999999886 557999999 999988876 22689999999987 544 49
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK 270 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 270 (296)
|+|++.+++|++++++...+|++++++|+| ||++++.+........ ..+ .......++.++|.+
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~ 223 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRF---------LVD----KEDSSLTRSDIHYKR 223 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCE---------EEE----TTTTEEEBCHHHHHH
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccc---------eec----ccCCcccCCHHHHHH
Confidence 999999999999988888999999999999 9999998865432211 000 011233569999999
Q ss_pred HHHhcCCceeEEEEcC
Q 022515 271 LFTYAGFSDYKIIPIL 286 (296)
Q Consensus 271 ll~~aGf~~~~~~~~~ 286 (296)
+++++||+++++....
T Consensus 224 ~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 224 LFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHTCCEEEEEECT
T ss_pred HHHHCCCEEEEeeecC
Confidence 9999999999987764
No 31
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.77 E-value=5.8e-18 Score=146.95 Aligned_cols=162 Identities=12% Similarity=0.169 Sum_probs=121.4
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCcc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISPA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~~ 190 (296)
..+++.++ ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ ..++++++.+|+.+-...|
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 34555555 66778999999999999999997774 59999999 899988865 2468999999997622569
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCC----CCchh-hhhhhhhhh-hhhhcCccccC
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG----DDKSI-ETQLFFDML-MMVLLTGTERD 264 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~----~~~~~-~~~~~~~~~-~~~~~~g~~rt 264 (296)
|+|++..++||+++++...+|++++++|+| ||++++.+...+.... ..+.. ......+.. .....++...+
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 207 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 207 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence 999999999999876677999999999999 9999999987654211 00000 000111111 11123566779
Q ss_pred HHHHHHHHHhcCCceeEEEEc
Q 022515 265 EKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~~~~~ 285 (296)
.+++.++++++||+++++...
T Consensus 208 ~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 208 IPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHHhCCcEEEEEEeC
Confidence 999999999999999988765
No 32
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.77 E-value=2.5e-18 Score=148.40 Aligned_cols=153 Identities=18% Similarity=0.351 Sum_probs=116.6
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--PADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~~D~v~~~~v 198 (296)
+.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56778999999999999999999999999999999 899988875 34689999999988 544 4999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh--hhhcCccccCHHHHHHHHHhcC
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM--MVLLTGTERDEKEWTKLFTYAG 276 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~rt~~e~~~ll~~aG 276 (296)
+|++++.. .+|++++++|+| ||.+++.+.........+.......++.... ....++..++..++.++|+++|
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence 99999875 789999999999 9999998854322110000001111111111 1123556668889999999999
Q ss_pred CceeEEEEc
Q 022515 277 FSDYKIIPI 285 (296)
Q Consensus 277 f~~~~~~~~ 285 (296)
|+++++.+.
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999888754
No 33
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.76 E-value=1.5e-17 Score=146.21 Aligned_cols=164 Identities=9% Similarity=0.052 Sum_probs=122.7
Q ss_pred HHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEec
Q 022515 109 MASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGG 181 (296)
Q Consensus 109 m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~ 181 (296)
+..........+++.++ .+.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.|++ ..++++++.+
T Consensus 97 ~~~~~~~~~~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 174 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC 174 (312)
T ss_dssp HHHHHHHHHHHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred hhhHHHHHHHHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 33333333345555554 24567899999999999999999986 679999999 999988875 3468999999
Q ss_pred cCCC-CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhc
Q 022515 182 DMFE-AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLL 258 (296)
Q Consensus 182 D~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (296)
|+.+ +++ .||+|++..++|+++ ...+|++++++|+| ||++++.+.......... ......+... .
T Consensus 175 d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--~~~~~~~~~~----~ 242 (312)
T 3vc1_A 175 NMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQP--SKWVSQINAH----F 242 (312)
T ss_dssp CTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSC--CHHHHHHHHH----H
T ss_pred ChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccch--hHHHHHHHhh----h
Confidence 9998 554 499999999999994 56899999999999 999999998776543211 0111111111 1
Q ss_pred CccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515 259 TGTERDEKEWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 259 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 286 (296)
....++.++|.++++++||+++++..+.
T Consensus 243 ~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 243 ECNIHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp TCCCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred cCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 1236689999999999999999887753
No 34
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.76 E-value=3.5e-18 Score=144.06 Aligned_cols=163 Identities=20% Similarity=0.161 Sum_probs=117.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccceeEe-hhhhccCCc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADAVLL-KWILHDWND 204 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~v~~-~~vlh~~~d 204 (296)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++ ..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4668999999999999999999976 8999999 99999887644679999999988 444 5999995 559998865
Q ss_pred -hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhh--------------------hhhhhhhhhhhhc-Cc--
Q 022515 205 -EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE--------------------TQLFFDMLMMVLL-TG-- 260 (296)
Q Consensus 205 -~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~-~g-- 260 (296)
++...+|++++++|+| ||++++.+...++......... ......+.++... ++
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV 193 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence 5677999999999999 8888887655443221100000 0000111111111 11
Q ss_pred ---------cccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 261 ---------TERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 261 ---------~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
+.+|.++|.++|+++||++..+....+...+++++|
T Consensus 194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 345999999999999998777765556677877764
No 35
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.75 E-value=3.1e-18 Score=150.17 Aligned_cols=166 Identities=13% Similarity=0.113 Sum_probs=119.7
Q ss_pred cCCCCEEEEecCCchHHHHHHH-HHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIA-KAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~ 197 (296)
+.++.+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4677899999999999999986 6789999999999 999988875 35679999999988 444 599999999
Q ss_pred hhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc-hh--hh-h--hh-hhhhhhhhcCc---cccCHH
Q 022515 198 ILHDWNDEE-CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK-SI--ET-Q--LF-FDMLMMVLLTG---TERDEK 266 (296)
Q Consensus 198 vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~-~~--~~-~--~~-~~~~~~~~~~g---~~rt~~ 266 (296)
++|++++.. ...+|++++++|+| ||++++.+...+....... +. .. . .. ....+...... ..++.+
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 999997664 44689999999999 9999998865543322100 00 00 0 00 00000001111 346999
Q ss_pred HHHHHHHhcCCceeEEEEcC-CcceEEEEeC
Q 022515 267 EWTKLFTYAGFSDYKIIPIL-GLRSLIEVYP 296 (296)
Q Consensus 267 e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 296 (296)
++.++|+++||+++++.... .....+.++|
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999999988653 3344555543
No 36
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.75 E-value=1.6e-17 Score=141.74 Aligned_cols=144 Identities=13% Similarity=0.128 Sum_probs=114.1
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~ 197 (296)
+.++.+|||||||+|.++..+++.+|. +++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 556789999999999999999999976 9999999 899988765 45779999999987 554 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF 277 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf 277 (296)
++|+++ ...+|++++++|+| ||++++.+.......... . ....+.. .....++.++|.++++++||
T Consensus 123 ~l~~~~---~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~~~~l~~aGf 188 (257)
T 3f4k_A 123 AIYNIG---FERGMNEWSKYLKK---GGFIAVSEASWFTSERPA---E---IEDFWMD--AYPEISVIPTCIDKMERAGY 188 (257)
T ss_dssp CSCCCC---HHHHHHHHHTTEEE---EEEEEEEEEEESSSCCCH---H---HHHHHHH--HCTTCCBHHHHHHHHHHTTE
T ss_pred hHhhcC---HHHHHHHHHHHcCC---CcEEEEEEeeccCCCChH---H---HHHHHHH--hCCCCCCHHHHHHHHHHCCC
Confidence 999983 34789999999999 999999997755433221 1 1111111 11335689999999999999
Q ss_pred ceeEEEEcC
Q 022515 278 SDYKIIPIL 286 (296)
Q Consensus 278 ~~~~~~~~~ 286 (296)
+++.+...+
T Consensus 189 ~~v~~~~~~ 197 (257)
T 3f4k_A 189 TPTAHFILP 197 (257)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEECC
Confidence 999987765
No 37
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.75 E-value=1.4e-17 Score=140.76 Aligned_cols=144 Identities=16% Similarity=0.172 Sum_probs=111.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC--ccceeEehhhhcc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS--PADAVLLKWILHD 201 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~ 201 (296)
+.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++.+++||
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 346789999999999999999998 679999999 999998876 46889999999998 554 4999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK 281 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 281 (296)
+++.. .+|++++++|+| ||++++.+........ . ..+............++.+++.++++++||++++
T Consensus 129 ~~~~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 129 TEEPL--RALNEIKRVLKS---DGYACIAILGPTAKPR------E-NSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp SSCHH--HHHHHHHHHEEE---EEEEEEEEECTTCGGG------G-GGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCHH--HHHHHHHHHhCC---CeEEEEEEcCCcchhh------h-hhhhhhccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 98764 789999999999 8998888753322111 0 1111111111234456999999999999999998
Q ss_pred EEEc
Q 022515 282 IIPI 285 (296)
Q Consensus 282 ~~~~ 285 (296)
...+
T Consensus 197 ~~~~ 200 (242)
T 3l8d_A 197 GIGV 200 (242)
T ss_dssp EEEE
T ss_pred eecc
Confidence 8754
No 38
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.75 E-value=8.2e-18 Score=147.21 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=123.0
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCcc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISPA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~~ 190 (296)
..+++.+. ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ ..++++++.+|+.+-...|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 44555555 67788999999999999999999986 89999999 999988876 3458999999997652359
Q ss_pred ceeEehhhhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchh-----hhhhhhhhhh-hhh
Q 022515 191 DAVLLKWILHDWND-------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSI-----ETQLFFDMLM-MVL 257 (296)
Q Consensus 191 D~v~~~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~-----~~~~~~~~~~-~~~ 257 (296)
|+|++..++|++++ +....+|++++++|+| ||++++.+...+......... ....+.++.. ...
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 99999999999955 4567899999999999 999999887765421100000 0000011111 122
Q ss_pred cCccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515 258 LTGTERDEKEWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 286 (296)
.++...+.+++.++++++||+++.+...+
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 45677899999999999999999887764
No 39
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.75 E-value=7.8e-18 Score=142.41 Aligned_cols=153 Identities=18% Similarity=0.342 Sum_probs=117.4
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS-- 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p-- 188 (296)
..+++.+. ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ...+++++.+|+.+ +++
T Consensus 11 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 11 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred chHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 34455555 67789999999999999999998864 8999999 899988775 33689999999987 554
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh--hcCccccCHH
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV--LLTGTERDEK 266 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~rt~~ 266 (296)
.||+|++..++|++++.. .+|++++++|+| ||++++.+...+... ....++...... ......++.+
T Consensus 87 ~fD~v~~~~~l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 155 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDVR--KAVREVARVLKQ---DGRFLLVDHYAPEDP------VLDEFVNHLNRLRDPSHVRESSLS 155 (239)
T ss_dssp CEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECBCSSH------HHHHHHHHHHHHHCTTCCCCCBHH
T ss_pred cEEEEEECCchhhccCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCCh------hHHHHHHHHHHhccccccCCCCHH
Confidence 499999999999998754 789999999999 999999987665421 111122211111 1224567999
Q ss_pred HHHHHHHhcCCceeEEEEc
Q 022515 267 EWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 267 e~~~ll~~aGf~~~~~~~~ 285 (296)
+|.++|+++||+++++...
T Consensus 156 ~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 156 EWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEEee
Confidence 9999999999998877654
No 40
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.75 E-value=1.1e-17 Score=144.33 Aligned_cols=141 Identities=17% Similarity=0.275 Sum_probs=111.7
Q ss_pred CCCEEEEecCCc---hHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC------------C--C
Q 022515 130 GLNSLVDVGGGI---GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA------------I--S 188 (296)
Q Consensus 130 ~~~~vLDvGgG~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~------------~--p 188 (296)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.|++.|++ ..++++++.+|+.++ + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888899999999999 999999876 357899999999762 1 2
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW 268 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~ 268 (296)
.+|+|++..+||++++++...+|++++++|+| ||++++.+...+. . . ......+.+.........++.+|+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~---~-~--~~~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG---L-P--AQQKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS---C-H--HHHHHHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc---h-H--HHHHHHHHHHhcCCCCccCCHHHH
Confidence 58999999999999998788999999999999 9999999876532 1 0 111222222222234567899999
Q ss_pred HHHHHhcCCceeE
Q 022515 269 TKLFTYAGFSDYK 281 (296)
Q Consensus 269 ~~ll~~aGf~~~~ 281 (296)
.++| +||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 5998765
No 41
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.75 E-value=3.7e-18 Score=140.54 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=113.0
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCchH
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEE 206 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~ 206 (296)
+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++.+++|+++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 679999999999999999988 669999999 99999887645689999999988 544 499999999999999777
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515 207 CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 207 ~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 286 (296)
...+|++++++|+| ||++++.+...+.... + .. .......++.++|.++++++||+++++...+
T Consensus 120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~---~---~~-------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVED---GGGLLMSFFSGPSLEP---M---YH-------PVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEE---EEEEEEEEECCSSCEE---E---CC-------SSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCC---CcEEEEEEccCCchhh---h---hc-------hhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 78999999999999 8998888754433110 0 00 0112345699999999999999999998775
Q ss_pred C
Q 022515 287 G 287 (296)
Q Consensus 287 ~ 287 (296)
.
T Consensus 184 ~ 184 (203)
T 3h2b_A 184 R 184 (203)
T ss_dssp T
T ss_pred C
Confidence 4
No 42
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.75 E-value=3.4e-17 Score=138.48 Aligned_cols=141 Identities=16% Similarity=0.278 Sum_probs=110.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC---CCC--ccceeEehhhhcc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE---AIS--PADAVLLKWILHD 201 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~---~~p--~~D~v~~~~vlh~ 201 (296)
+.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .||+|++..++|+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~ 113 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEH 113 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGG
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhh
Confidence 456789999999999999999998 568999999 8999988722 8999999876 444 4999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK 281 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 281 (296)
+++++...+|++++++|+| ||++++....... . ....... .........+.+++.++++++||++++
T Consensus 114 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~------~---~~~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~ 180 (240)
T 3dli_A 114 LDPERLFELLSLCYSKMKY---SSYIVIESPNPTS------L---YSLINFY-IDPTHKKPVHPETLKFILEYLGFRDVK 180 (240)
T ss_dssp SCGGGHHHHHHHHHHHBCT---TCCEEEEEECTTS------H---HHHHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred CCcHHHHHHHHHHHHHcCC---CcEEEEEeCCcch------h---HHHHHHh-cCccccccCCHHHHHHHHHHCCCeEEE
Confidence 9988888999999999999 9999887653211 0 0111111 111234556899999999999999988
Q ss_pred EEEcC
Q 022515 282 IIPIL 286 (296)
Q Consensus 282 ~~~~~ 286 (296)
+....
T Consensus 181 ~~~~~ 185 (240)
T 3dli_A 181 IEFFE 185 (240)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87654
No 43
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.74 E-value=1.5e-17 Score=142.83 Aligned_cols=144 Identities=12% Similarity=0.093 Sum_probs=114.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~ 197 (296)
+.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 467789999999999999999998 7889999999 999988875 34789999999988 544 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF 277 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf 277 (296)
++|++ +. ..+|++++++|+| ||++++.+.......... . ....+. .......+.+++.++++++||
T Consensus 123 ~~~~~-~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~~--~~~~~~~~~~~~~~~l~~aGf 188 (267)
T 3kkz_A 123 AIYNI-GF--ERGLNEWRKYLKK---GGYLAVSECSWFTDERPA---E---INDFWM--DAYPEIDTIPNQVAKIHKAGY 188 (267)
T ss_dssp CGGGT-CH--HHHHHHHGGGEEE---EEEEEEEEEEESSSCCCH---H---HHHHHH--HHCTTCEEHHHHHHHHHHTTE
T ss_pred Cceec-CH--HHHHHHHHHHcCC---CCEEEEEEeeecCCCChH---H---HHHHHH--HhCCCCCCHHHHHHHHHHCCC
Confidence 99999 33 4789999999999 999999998765443221 1 111111 111345589999999999999
Q ss_pred ceeEEEEcC
Q 022515 278 SDYKIIPIL 286 (296)
Q Consensus 278 ~~~~~~~~~ 286 (296)
+++++..++
T Consensus 189 ~~v~~~~~~ 197 (267)
T 3kkz_A 189 LPVATFILP 197 (267)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 999988765
No 44
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.74 E-value=7.6e-18 Score=141.95 Aligned_cols=133 Identities=16% Similarity=0.174 Sum_probs=109.4
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhhcc
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWILHD 201 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~ 201 (296)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999998876 5779999999 899988876 23579999999998 333 5999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK 281 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 281 (296)
+++++...+|++++++|+| ||++++.+.........+ ...++.++|.++|+++||++++
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDHVGGP------------------PYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCSCS------------------SCCCCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCCCC------------------CccCCHHHHHHHHHHcCCeEEE
Confidence 9988888999999999999 999988876544322211 1124899999999999999999
Q ss_pred EEEcC
Q 022515 282 IIPIL 286 (296)
Q Consensus 282 ~~~~~ 286 (296)
+...+
T Consensus 204 ~~~~~ 208 (235)
T 3lcc_A 204 VEENP 208 (235)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 88764
No 45
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.74 E-value=1.5e-17 Score=144.34 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=113.6
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEehhhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLKWIL 199 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~~vl 199 (296)
..++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 567789999999999999999999984 89999999 899988775 33489999999998 555 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee-----C---CCCCCCchhhhhhhhhhhhh--hhcCccccCHHHHH
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR-----E---NKKGDDKSIETQLFFDMLMM--VLLTGTERDEKEWT 269 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~-----~---~~~~~~~~~~~~~~~~~~~~--~~~~g~~rt~~e~~ 269 (296)
|++++.. .+|++++++|+| ||++++.+... . ++...++......+..+... ...+....+..++.
T Consensus 100 ~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (284)
T 3gu3_A 100 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 174 (284)
T ss_dssp GGCSSHH--HHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred hcCCCHH--HHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence 9998875 889999999999 99999988651 1 11110000001112211111 11234455678899
Q ss_pred HHHHhcCCceeEEEEc
Q 022515 270 KLFTYAGFSDYKIIPI 285 (296)
Q Consensus 270 ~ll~~aGf~~~~~~~~ 285 (296)
++|+++||+.+++...
T Consensus 175 ~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 175 IYLSELGVKNIECRVS 190 (284)
T ss_dssp HHHHHTTCEEEEEEEC
T ss_pred HHHHHcCCCeEEEEEc
Confidence 9999999999877443
No 46
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.74 E-value=1.3e-17 Score=146.89 Aligned_cols=162 Identities=14% Similarity=0.215 Sum_probs=121.7
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCcc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISPA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~~ 190 (296)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+....|
T Consensus 80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 44555555 6677899999999999999999987 569999999 999988875 2367999999987632469
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCC----Cchh-hhhhhhhhhh-hhhcCccccC
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGD----DKSI-ETQLFFDMLM-MVLLTGTERD 264 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~----~~~~-~~~~~~~~~~-~~~~~g~~rt 264 (296)
|+|++..++|++++++...+|+++.++|+| ||++++.+...+..... .+.. ......+... ....++...+
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 233 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence 999999999999877778999999999999 99999988876542110 0000 0000111111 1123566779
Q ss_pred HHHHHHHHHhcCCceeEEEEc
Q 022515 265 EKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~~~~~ 285 (296)
.+++.++++++||+++++...
T Consensus 234 ~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHHhCCCEEEEEEec
Confidence 999999999999999887664
No 47
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.73 E-value=5.7e-18 Score=135.48 Aligned_cols=142 Identities=20% Similarity=0.268 Sum_probs=113.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCCccceeEehhhhccCCch
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLKWILHDWNDE 205 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh~~~d~ 205 (296)
..+..+|||||||+|.++..+++... +++++|+ +.+++.+++..+++++..+| .. +...||+|++..++|++++.
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~~~~~~D~v~~~~~l~~~~~~ 91 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP-KEIPDNSVDFILFANSFHDMDDK 91 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG-GGSCTTCEEEEEEESCSTTCSCH
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCCCCCceEEEEEccchhcccCH
Confidence 56778999999999999999999873 9999999 89998887546789999999 32 22359999999999999865
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 206 ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 206 ~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
. .++++++++|+| ||++++.+.........++ ....++.++|.++++ ||+++++...
T Consensus 92 ~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~--Gf~~~~~~~~ 148 (170)
T 3i9f_A 92 Q--HVISEVKRILKD---DGRVIIIDWRKENTGIGPP----------------LSIRMDEKDYMGWFS--NFVVEKRFNP 148 (170)
T ss_dssp H--HHHHHHHHHEEE---EEEEEEEEECSSCCSSSSC----------------GGGCCCHHHHHHHTT--TEEEEEEECS
T ss_pred H--HHHHHHHHhcCC---CCEEEEEEcCccccccCch----------------HhhhcCHHHHHHHHh--CcEEEEccCC
Confidence 4 889999999999 9999999876554332211 012248999999999 9999999988
Q ss_pred CCcceEEEEe
Q 022515 286 LGLRSLIEVY 295 (296)
Q Consensus 286 ~~~~~vi~~~ 295 (296)
......+.++
T Consensus 149 ~~~~~~l~~~ 158 (170)
T 3i9f_A 149 TPYHFGLVLK 158 (170)
T ss_dssp STTEEEEEEE
T ss_pred CCceEEEEEe
Confidence 7665555543
No 48
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.73 E-value=1.8e-17 Score=144.73 Aligned_cols=170 Identities=12% Similarity=0.174 Sum_probs=117.6
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CC----CCeeEEeccCCC-CC
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DL----ANLKYVGGDMFE-AI 187 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~----~ri~~~~~D~~~-~~ 187 (296)
..+++.++ ....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .. .+++++.+|+.+ +.
T Consensus 73 ~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 73 REFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 34444443 23459999999999999999987 678999999 999998876 22 789999999998 55
Q ss_pred C-ccceeEe-hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc-----hh-hhhhhhhhh------
Q 022515 188 S-PADAVLL-KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK-----SI-ETQLFFDML------ 253 (296)
Q Consensus 188 p-~~D~v~~-~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~-----~~-~~~~~~~~~------ 253 (296)
+ .||+|++ ..++|++++++...+|++++++|+| ||++++.....+....... +. .....+.+.
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 224 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA 224 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence 5 4998885 5778888877788999999999999 8888887654432110000 00 000000000
Q ss_pred -------hhh-----------hcCccccCHHHHHHHHHhcCCceeEEEEcCCc------ceEEEEe
Q 022515 254 -------MMV-----------LLTGTERDEKEWTKLFTYAGFSDYKIIPILGL------RSLIEVY 295 (296)
Q Consensus 254 -------~~~-----------~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~------~~vi~~~ 295 (296)
+.. ...-+.++.++|.++|+++||+++++.++... ..++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 000 00112459999999999999999999887522 3566664
No 49
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.73 E-value=1.2e-17 Score=141.39 Aligned_cols=140 Identities=18% Similarity=0.302 Sum_probs=113.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C----CCCeeEEeccCCC-CCC--ccceeEehhhhc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D----LANLKYVGGDMFE-AIS--PADAVLLKWILH 200 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~----~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh 200 (296)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . ..+++++.+|+.+ +.+ .||+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998886 569999999 999988876 2 3469999999877 443 499999999999
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
++++++...+|++++++|+| ||++++.+..... .. .++. ..+...++.++|.++++++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~---~~-------~~~~----~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQE---GV-------ILDD----VDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSS---SE-------EEET----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCC---cc-------eecc----cCCcccCCHHHHHHHHHHcCCeEE
Confidence 99998888999999999999 9999999877654 10 0100 112334589999999999999999
Q ss_pred EEEEcCC
Q 022515 281 KIIPILG 287 (296)
Q Consensus 281 ~~~~~~~ 287 (296)
++....+
T Consensus 221 ~~~~~~~ 227 (241)
T 2ex4_A 221 AEERQEN 227 (241)
T ss_dssp EEEECCS
T ss_pred EeeecCC
Confidence 9887643
No 50
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.73 E-value=2.2e-17 Score=136.24 Aligned_cols=136 Identities=7% Similarity=-0.025 Sum_probs=106.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--C---------------CCCeeEEeccCCC-CCC
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--D---------------LANLKYVGGDMFE-AIS 188 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~---------------~~ri~~~~~D~~~-~~p 188 (296)
..++.+|||+|||+|..+..|+++ +.+++++|+ +.+++.|++ . ..+++++.+|+++ +.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999998 679999999 999998875 1 3689999999998 542
Q ss_pred ---ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCH
Q 022515 189 ---PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDE 265 (296)
Q Consensus 189 ---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 265 (296)
.||+|++..++|++++++..+++++++++|+| ||+++++....+..... ......+.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~~-----------------~~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALLE-----------------GPPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSSS-----------------SCCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCccccC-----------------CCCCCCCH
Confidence 59999999999999987777899999999999 99855554433211000 00112488
Q ss_pred HHHHHHHHhcCCceeEEEEcC
Q 022515 266 KEWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 266 ~e~~~ll~~aGf~~~~~~~~~ 286 (296)
+++.+++++ ||++..+....
T Consensus 158 ~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEESS
T ss_pred HHHHHHhcC-CcEEEEecccc
Confidence 999999999 99988776653
No 51
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.72 E-value=2.7e-17 Score=140.07 Aligned_cols=159 Identities=17% Similarity=0.128 Sum_probs=111.9
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC--ccce
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS--PADA 192 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p--~~D~ 192 (296)
.+.+.++ ..++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+
T Consensus 35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 3444444 446789999999999999999998654 9999999 999998876 45789999999987 554 4999
Q ss_pred eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC----------CCCCch-hhhhhhhhh-----hhhh
Q 022515 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK----------KGDDKS-IETQLFFDM-----LMMV 256 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~----------~~~~~~-~~~~~~~~~-----~~~~ 256 (296)
|++..++|++++. ..+|++++++|+| ||++++........ ...... ......++. ....
T Consensus 112 v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (253)
T 3g5l_A 112 VLSSLALHYIASF--DDICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLG 186 (253)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETT
T ss_pred EEEchhhhhhhhH--HHHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeecc
Confidence 9999999999765 4889999999999 89988864321100 000000 000000000 0000
Q ss_pred -hcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 257 -LLTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 257 -~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
......+|.++|.++|+++||+++++...
T Consensus 187 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 187 EDVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred ccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 01112349999999999999999998754
No 52
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.71 E-value=8.2e-17 Score=145.52 Aligned_cols=145 Identities=14% Similarity=0.231 Sum_probs=113.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCCC---------C----CCeeEEeccCCC-------C
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDSD---------L----ANLKYVGGDMFE-------A 186 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~----~ri~~~~~D~~~-------~ 186 (296)
.++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. . .+++|+.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 467899999999999999999987 7889999999 9999888751 2 699999999987 3
Q ss_pred CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccC
Q 022515 187 IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERD 264 (296)
Q Consensus 187 ~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt 264 (296)
++ .||+|++..++|++++.. .+|++++++|+| ||++++.+......... .. ...........+..++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~ 230 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKL--ALFKEIHRVLRD---GGELYFSDVYADRRLSE----AA--QQDPILYGECLGGALY 230 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEESSCCCH----HH--HHCHHHHHTTCTTCCB
T ss_pred CCCCCEEEEEEccchhcCCCHH--HHHHHHHHHcCC---CCEEEEEEeccccccCH----hH--hhhHHHhhcccccCCC
Confidence 33 499999999999998754 889999999999 99999988776543221 10 1111111222345668
Q ss_pred HHHHHHHHHhcCCceeEEEE
Q 022515 265 EKEWTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~~~~ 284 (296)
.++|.++|+++||+++++..
T Consensus 231 ~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 231 LEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe
Confidence 89999999999999876654
No 53
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.71 E-value=8.8e-17 Score=134.91 Aligned_cols=149 Identities=13% Similarity=0.150 Sum_probs=110.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------CCCCeeEEeccCCC-CCC--cccee
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------DLANLKYVGGDMFE-AIS--PADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~D~~~-~~p--~~D~v 193 (296)
+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++..+|+.+ +.+ .||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 346789999999999999999998 679999999 888887765 12478999999988 544 49999
Q ss_pred EehhhhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhc--------------
Q 022515 194 LLKWILHDWNDEE-CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLL-------------- 258 (296)
Q Consensus 194 ~~~~vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 258 (296)
++..++|++++.. ...+|++++++|+| ||++++.+........ .........+......
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLK---LYRKRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSH---HHHHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHH---HHHHHhhhhccchhhhcceEecccccCCcc
Confidence 9999999998654 56899999999999 9999998875532211 1010001111000000
Q ss_pred -CccccCHHHHHHHHHhcCCceeEEEE
Q 022515 259 -TGTERDEKEWTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 259 -~g~~rt~~e~~~ll~~aGf~~~~~~~ 284 (296)
....++.++|.++++++||+++++..
T Consensus 180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 180 FIAHHFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp EEEECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred eeeEeCCHHHHHHHHHHcCCEEEEEEe
Confidence 11356999999999999999988764
No 54
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.71 E-value=5.3e-17 Score=137.35 Aligned_cols=145 Identities=13% Similarity=0.166 Sum_probs=108.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCCCCC--ccceeEehhhhccCCc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFEAIS--PADAVLLKWILHDWND 204 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~~~d 204 (296)
.++.+|||||||+|.++..+++..+ +++++|+ +.+++.|++ ...+++++.+|+.+..+ .||+|++.+++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3567899999999999999998865 7999999 899998876 33389999999987422 4999999999999987
Q ss_pred hHHHHHHHHHH-HhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh---------hhhhhcCccccCHHHHHHHHHh
Q 022515 205 EECVKILKKCK-EAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM---------LMMVLLTGTERDEKEWTKLFTY 274 (296)
Q Consensus 205 ~~~~~iL~~~~-~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~rt~~e~~~ll~~ 274 (296)
.. .+|++++ ++|+| ||++++.+...... .......... ..........++.+++.+++++
T Consensus 119 ~~--~~l~~~~~~~Lkp---gG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (250)
T 2p7i_A 119 PV--ALLKRINDDWLAE---GGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 188 (250)
T ss_dssp HH--HHHHHHHHTTEEE---EEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred HH--HHHHHHHHHhcCC---CCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence 64 8899999 99999 99999877532210 0000000000 0001122356799999999999
Q ss_pred cCCceeEEEEc
Q 022515 275 AGFSDYKIIPI 285 (296)
Q Consensus 275 aGf~~~~~~~~ 285 (296)
+||+++++...
T Consensus 189 ~Gf~~~~~~~~ 199 (250)
T 2p7i_A 189 AGLQVTYRSGI 199 (250)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCeEEEEeee
Confidence 99999887653
No 55
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.71 E-value=6.3e-17 Score=134.77 Aligned_cols=145 Identities=14% Similarity=0.066 Sum_probs=105.0
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CC----CCeeEEeccCCC-CCC--cccee
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DL----ANLKYVGGDMFE-AIS--PADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~----~ri~~~~~D~~~-~~p--~~D~v 193 (296)
..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .. .+++++.+|+.. +.+ .||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 35678999999999999999999988899999999 999988875 11 289999999976 432 59999
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH----
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT---- 269 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~---- 269 (296)
++..++|++++++..++|++++++|+| ||.+++........... . .....+........++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVSTPNKEYNFHYG----N---LFEGNLRHRDHRFEWTRKEFQTWAV 176 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEBGGGGGCCC----C---T-----GGGCCTTSBCHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEccchhhhhhhc----c---cCcccccccCceeeecHHHHHHHHH
Confidence 999999999988888999999999999 88554443321111000 0 000000001122345888888
Q ss_pred HHHHhcCCceeEE
Q 022515 270 KLFTYAGFSDYKI 282 (296)
Q Consensus 270 ~ll~~aGf~~~~~ 282 (296)
++++++||++...
T Consensus 177 ~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 177 KVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHTEEEEEE
T ss_pred HHHHHCCcEEEEE
Confidence 8889999976443
No 56
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.71 E-value=2.9e-16 Score=132.51 Aligned_cols=159 Identities=12% Similarity=0.092 Sum_probs=111.2
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC--ccce
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS--PADA 192 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p--~~D~ 192 (296)
.+...++ ..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+
T Consensus 34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 4444454 4567899999999999999999873 238999999 899988876 34579999999987 544 4999
Q ss_pred eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc-hh---------hhhhhhh-----hhhhh-
Q 022515 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK-SI---------ETQLFFD-----MLMMV- 256 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~-~~---------~~~~~~~-----~~~~~- 256 (296)
|++..++|++++. ..+|++++++|+| ||++++............+ +. .....+. ...+.
T Consensus 111 v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (243)
T 3bkw_A 111 AYSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK 185 (243)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHH
T ss_pred EEEeccccccchH--HHHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccC
Confidence 9999999999864 4889999999999 8998887642110000000 00 0000000 00000
Q ss_pred hcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 257 LLTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 257 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
......+|.++|.++|+++||+++++...
T Consensus 186 ~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 186 GVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp SCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred ceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 11123358999999999999999988764
No 57
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.71 E-value=5.6e-17 Score=140.22 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=114.5
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccce
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADA 192 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~ 192 (296)
....+++.+. ..++.+|||||||+|.++..+++ ++.+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+
T Consensus 45 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~ 120 (279)
T 3ccf_A 45 YGEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDA 120 (279)
T ss_dssp SCCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEE
T ss_pred HHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCE
Confidence 3445555555 56778999999999999999998 7889999999 99999887634789999999988 554 4999
Q ss_pred eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh-------hcCccccCH
Q 022515 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV-------LLTGTERDE 265 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~rt~ 265 (296)
|++..++|++++.. .+|++++++|+| ||++++....... ... ....+....... ......++.
T Consensus 121 v~~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (279)
T 3ccf_A 121 VFSNAMLHWVKEPE--AAIASIHQALKS---GGRFVAEFGGKGN---IKY--ILEALYNALETLGIHNPQALNPWYFPSI 190 (279)
T ss_dssp EEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECTTT---THH--HHHHHHHHHHHHTCCCGGGGCCCCCCCH
T ss_pred EEEcchhhhCcCHH--HHHHHHHHhcCC---CcEEEEEecCCcc---hHH--HHHHHHHHHHhcCCccccCcCceeCCCH
Confidence 99999999998765 789999999999 8988886543211 000 011111110000 001134589
Q ss_pred HHHHHHHHhcCCceeEEEEc
Q 022515 266 KEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 266 ~e~~~ll~~aGf~~~~~~~~ 285 (296)
++|.++|+++||+++++...
T Consensus 191 ~~~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 191 GEYVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEEEe
Confidence 99999999999998876644
No 58
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.71 E-value=1.7e-16 Score=135.97 Aligned_cols=151 Identities=14% Similarity=0.165 Sum_probs=112.7
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--cccee
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAV 193 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v 193 (296)
..+++.++ ..++.+|||||||+|.++..+++ |+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVV-HPQVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCC-CTTEEEECCCTTSCCSCTTCBSEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHh-ccCCEEEECchhhCCCCCCCEeEE
Confidence 44455554 56778999999999999999987 6889999999 999999884 3399999999988 654 49999
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHH
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFT 273 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~ 273 (296)
++.+++|++++.. .+|++++++|+ ||++++.+...+..... + ....+.. .....+....+.+++. +|+
T Consensus 99 ~~~~~l~~~~~~~--~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~--~--~~~~~~~-~~~~~~~~~~~~~~~~-~l~ 166 (261)
T 3ege_A 99 ISILAIHHFSHLE--KSFQEMQRIIR----DGTIVLLTFDIRLAQRI--W--LYDYFPF-LWEDALRFLPLDEQIN-LLQ 166 (261)
T ss_dssp EEESCGGGCSSHH--HHHHHHHHHBC----SSCEEEEEECGGGCCCC--G--GGGTCHH-HHHHHHTSCCHHHHHH-HHH
T ss_pred EEcchHhhccCHH--HHHHHHHHHhC----CcEEEEEEcCCchhHHH--H--HHHHHHH-HhhhhhhhCCCHHHHH-HHH
Confidence 9999999997754 88999999998 59999998754332211 0 0000000 0011123345778899 999
Q ss_pred hcCCceeEEEEc
Q 022515 274 YAGFSDYKIIPI 285 (296)
Q Consensus 274 ~aGf~~~~~~~~ 285 (296)
++||+++++...
T Consensus 167 ~aGF~~v~~~~~ 178 (261)
T 3ege_A 167 ENTKRRVEAIPF 178 (261)
T ss_dssp HHHCSEEEEEEC
T ss_pred HcCCCceeEEEe
Confidence 999999888765
No 59
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.70 E-value=5.9e-17 Score=134.82 Aligned_cols=144 Identities=13% Similarity=0.005 Sum_probs=104.5
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CC----CCeeEEeccCCC-CCC--cccee
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DL----ANLKYVGGDMFE-AIS--PADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~----~ri~~~~~D~~~-~~p--~~D~v 193 (296)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .. .+++++.+|+.. +.+ .||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 45678999999999999999999988899999999 999988875 11 289999999876 433 59999
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH----
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT---- 269 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~---- 269 (296)
++..++|++++++..++|++++++|+| ||.+++........ .........+........++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPNIEYNV-------KFANLPAGKLRHKDHRFEWTRSQFQNWAN 176 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEBHHHHH-------HTC-----------CCSCBCHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccCcccch-------hhcccccccccccccccccCHHHHHHHHH
Confidence 999999999988888999999999999 88655554311000 0000000000001122345888888
Q ss_pred HHHHhcCCceeE
Q 022515 270 KLFTYAGFSDYK 281 (296)
Q Consensus 270 ~ll~~aGf~~~~ 281 (296)
++++++||++..
T Consensus 177 ~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 177 KITERFAYNVQF 188 (217)
T ss_dssp HHHHHSSEEEEE
T ss_pred HHHHHcCceEEE
Confidence 889999998643
No 60
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.70 E-value=3.7e-17 Score=135.40 Aligned_cols=138 Identities=16% Similarity=0.100 Sum_probs=108.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccceeEehhhhccCCc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADAVLLKWILHDWND 204 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~~d 204 (296)
+.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +.+ .||+|++..++|++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASR-RLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-HHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHH-hcCCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence 456789999999999999999987 679999999 899988874 2267888999887 433 4999999999999998
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC-CceeEEE
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG-FSDYKII 283 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG-f~~~~~~ 283 (296)
++...+|++++++|+| ||++++........... ... .....++.++|.++++++| |+++++.
T Consensus 118 ~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~--------~~~------~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 118 DELADVLKLIWRALKP---GGLFYASYKSGEGEGRD--------KLA------RYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp HHHHHHHHHHHHHEEE---EEEEEEEEECCSSCEEC--------TTS------CEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEEEcCCCccccc--------ccc------hhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 8888999999999999 89888875433221100 000 0113459999999999999 9999887
Q ss_pred Ec
Q 022515 284 PI 285 (296)
Q Consensus 284 ~~ 285 (296)
..
T Consensus 181 ~~ 182 (211)
T 3e23_A 181 SS 182 (211)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 61
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.70 E-value=3.9e-17 Score=141.63 Aligned_cols=148 Identities=17% Similarity=0.160 Sum_probs=110.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-C-CC--ccceeEehhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-A-IS--PADAVLLKWI 198 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~-~p--~~D~v~~~~v 198 (296)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++++.+|+.+ + .+ .||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 3579999999999999999988 679999999 999988875 23789999999988 3 33 4999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh--------hcCccccCHHHHHH
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV--------LLTGTERDEKEWTK 270 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~rt~~e~~~ 270 (296)
+|++++.. .+|++++++|+| ||++++.+......... ......+...... ......++.+++.+
T Consensus 146 l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (285)
T 4htf_A 146 LEWVADPR--SVLQTLWSVLRP---GGVLSLMFYNAHGLLMH---NMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL 217 (285)
T ss_dssp GGGCSCHH--HHHHHHHHTEEE---EEEEEEEEEBHHHHHHH---HHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH
T ss_pred hhcccCHH--HHHHHHHHHcCC---CeEEEEEEeCCchHHHH---HHHhcCHHHHhhhccccccccCCCCCCCCHHHHHH
Confidence 99998764 789999999999 89988887643221000 0000000000000 01124568999999
Q ss_pred HHHhcCCceeEEEEcCC
Q 022515 271 LFTYAGFSDYKIIPILG 287 (296)
Q Consensus 271 ll~~aGf~~~~~~~~~~ 287 (296)
+++++||+++++..+..
T Consensus 218 ~l~~aGf~v~~~~~~~~ 234 (285)
T 4htf_A 218 WLEEAGWQIMGKTGVRV 234 (285)
T ss_dssp HHHHTTCEEEEEEEESS
T ss_pred HHHHCCCceeeeeeEEE
Confidence 99999999998887643
No 62
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.70 E-value=1.4e-16 Score=135.95 Aligned_cols=151 Identities=12% Similarity=0.081 Sum_probs=111.2
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccceeE
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADAVL 194 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~v~ 194 (296)
..+++.+. ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|+
T Consensus 23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY 100 (259)
T ss_dssp HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence 34555555 56778999999999999999999999999999999 99999887545689999999988 422 499999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhh-hhhhhhhhhhh-------hcCccccCHH
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE-TQLFFDMLMMV-------LLTGTERDEK 266 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~g~~rt~~ 266 (296)
+..++|++++. ..+|++++++|+| ||++++....... . +... .........+. .......+.+
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T 2p35_A 101 ANAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPDNLQ---E-PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPS 171 (259)
T ss_dssp EESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEECCTT---S-HHHHHHHHHHHHSTTGGGC-------CCCCCHH
T ss_pred EeCchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCCCCC---c-HHHHHHHHHhcCcchHHHhccccccccCCCCHH
Confidence 99999999765 4789999999999 8999888753211 1 1100 00010000000 0123456899
Q ss_pred HHHHHHHhcCCce
Q 022515 267 EWTKLFTYAGFSD 279 (296)
Q Consensus 267 e~~~ll~~aGf~~ 279 (296)
+|.++|+++||++
T Consensus 172 ~~~~~l~~aGf~v 184 (259)
T 2p35_A 172 DYFNALSPKSSRV 184 (259)
T ss_dssp HHHHHHGGGEEEE
T ss_pred HHHHHHHhcCCce
Confidence 9999999999974
No 63
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.69 E-value=3e-16 Score=128.33 Aligned_cols=142 Identities=13% Similarity=0.147 Sum_probs=111.5
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-cc
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS-PA 190 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p-~~ 190 (296)
.+++.++ ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...++++..+|+.+ +.+ .|
T Consensus 23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (199)
T 2xvm_A 23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY 98 (199)
T ss_dssp HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence 4445555 445679999999999999999987 679999999 899988875 23479999999987 444 59
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK 270 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 270 (296)
|+|++..++|++++++...+|++++++|+| ||++++++....+....+ ......++.+++++
T Consensus 99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 160 (199)
T 2xvm_A 99 DFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELRR 160 (199)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHHH
T ss_pred eEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHHH
Confidence 999999999999987788999999999999 999998887654432210 01122348889999
Q ss_pred HHHhcCCceeEEEE
Q 022515 271 LFTYAGFSDYKIIP 284 (296)
Q Consensus 271 ll~~aGf~~~~~~~ 284 (296)
++++ |++++...
T Consensus 161 ~~~~--f~~~~~~~ 172 (199)
T 2xvm_A 161 YYEG--WERVKYNE 172 (199)
T ss_dssp HTTT--SEEEEEEC
T ss_pred HhcC--CeEEEecc
Confidence 9987 98887654
No 64
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=144.65 Aligned_cols=147 Identities=14% Similarity=0.208 Sum_probs=105.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----C--C----------------------------
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----D--L---------------------------- 173 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~---------------------------- 173 (296)
..+.+|||||||+|.++..+++.+|..+++++|+ +.+++.|++ . .
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 4678999999999999999999999999999999 899988765 1 1
Q ss_pred -----------------------------CCeeEEeccCCCCC--------CccceeEehhhhccC----CchHHHHHHH
Q 022515 174 -----------------------------ANLKYVGGDMFEAI--------SPADAVLLKWILHDW----NDEECVKILK 212 (296)
Q Consensus 174 -----------------------------~ri~~~~~D~~~~~--------p~~D~v~~~~vlh~~----~d~~~~~iL~ 212 (296)
.+|+|+.+|+.... +.||+|++..++|++ +++...++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 58999999998622 259999999999665 6777889999
Q ss_pred HHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh--cCCceeEEEEc
Q 022515 213 KCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY--AGFSDYKIIPI 285 (296)
Q Consensus 213 ~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~--aGf~~~~~~~~ 285 (296)
+++++|+| ||++++....+.... ....... ............++++.++|.+ +||+.+++...
T Consensus 205 ~~~~~Lkp---GG~lil~~~~~~~y~------~~~~~~~-~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 205 RIYRHLRP---GGILVLEPQPWSSYG------KRKTLTE-TIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHEEE---EEEEEEECCCHHHHH------TTTTSCH-HHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHhCC---CcEEEEecCCchhhh------hhhcccH-HHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999 887776432211000 0000000 0000111223357899999999 99998887654
No 65
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.69 E-value=1.9e-16 Score=133.77 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=82.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEehh-hhcc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLKW-ILHD 201 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~~-vlh~ 201 (296)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++.. ++|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999988 568999999 999988876 23389999999987 554 599999998 9999
Q ss_pred CCc-hHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 202 WND-EECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 202 ~~d-~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
+++ ++...+|++++++|+| ||++++.
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~ 141 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIFD 141 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 954 5677999999999999 8887763
No 66
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.68 E-value=3e-16 Score=135.13 Aligned_cols=159 Identities=11% Similarity=0.063 Sum_probs=113.6
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hh------HhhccCC------CCCCeeEEecc-C
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PH------VVNGLDS------DLANLKYVGGD-M 183 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~------~~~ri~~~~~D-~ 183 (296)
.+++.++ ..++.+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++ ..++++++.+| +
T Consensus 34 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 34 AIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 4455555 6678899999999999999999996 7789999999 65 7777765 23689999998 5
Q ss_pred CC---CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhh-hhhhhhhhhhh
Q 022515 184 FE---AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET-QLFFDMLMMVL 257 (296)
Q Consensus 184 ~~---~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~-~~~~~~~~~~~ 257 (296)
.. +++ .||+|++..++|++++.. .+++.+++.++| ||++++.+...+...... .... .......+...
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 185 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYAI 185 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhhc
Confidence 43 233 499999999999999875 467777777777 999999998765542210 0000 00110000000
Q ss_pred ----cC--ccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 258 ----LT--GTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 258 ----~~--g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
.. ...++.+++.++++++||+++++...
T Consensus 186 ~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 186 APSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp SCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 11 13569999999999999999887765
No 67
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.67 E-value=2.8e-16 Score=133.08 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=110.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC-------ccceeEeh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS-------PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p-------~~D~v~~~ 196 (296)
..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999987 8999999 899998876 45689999999998 322 28999999
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhh-------hhhhhhhhhhcCccccCHHHHH
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQ-------LFFDMLMMVLLTGTERDEKEWT 269 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~rt~~e~~ 269 (296)
.++|++++++...+|++++++|+| ||++++.+...++... ..... ......+........++.+++.
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDF---FNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIE 205 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHH---HHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHH---HHHHHhCCCCCchhhhhccccCCCCCccCHHHHH
Confidence 999999988888999999999999 9999999975432100 00000 0000000000111235899999
Q ss_pred HHHHhcCCceeEEEEc
Q 022515 270 KLFTYAGFSDYKIIPI 285 (296)
Q Consensus 270 ~ll~~aGf~~~~~~~~ 285 (296)
+++ +||+++....+
T Consensus 206 ~~~--aGf~~~~~~~~ 219 (245)
T 3ggd_A 206 LYF--PDFEILSQGEG 219 (245)
T ss_dssp HHC--TTEEEEEEECC
T ss_pred HHh--CCCEEEecccc
Confidence 999 99998876443
No 68
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.67 E-value=4.1e-16 Score=131.62 Aligned_cols=95 Identities=23% Similarity=0.351 Sum_probs=80.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEehh-hhc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLKW-ILH 200 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~~-vlh 200 (296)
.+..+|||||||+|.++..+++. .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++.. ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 45689999999999999998877 69999999 999998876 34689999999987 544 599999986 999
Q ss_pred cC-CchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 201 DW-NDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 201 ~~-~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
++ +.++...+|++++++|+| ||++++
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~p---gG~l~~ 135 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTD---GGKLLF 135 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCC---CeEEEE
Confidence 88 455677899999999999 888776
No 69
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.66 E-value=1.9e-15 Score=122.89 Aligned_cols=126 Identities=16% Similarity=0.177 Sum_probs=105.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEeh-hhhccCC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLK-WILHDWN 203 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~-~vlh~~~ 203 (296)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++. .++|+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 46789999999999999999987 679999999 89998887644579999999988 554 49999998 8999998
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEE
Q 022515 204 DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII 283 (296)
Q Consensus 204 d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 283 (296)
+++...+|+++.+.|+| ||++++..... ..++.+++.++++++||+++++.
T Consensus 123 ~~~~~~~l~~~~~~l~~---~G~l~~~~~~~--------------------------~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 123 EDGREPALANIHRALGA---DGRAVIGFGAG--------------------------RGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp HHHHHHHHHHHHHHEEE---EEEEEEEEETT--------------------------SSCCHHHHHHHHHHHTEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCC---CCEEEEEeCCC--------------------------CCcCHHHHHHHHHHcCCEEeeee
Confidence 88788999999999999 88888754211 11378899999999999998876
Q ss_pred Ec
Q 022515 284 PI 285 (296)
Q Consensus 284 ~~ 285 (296)
..
T Consensus 174 ~~ 175 (195)
T 3cgg_A 174 ES 175 (195)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 70
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.66 E-value=2.1e-16 Score=131.82 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=108.7
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-----C-Cc-c
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-----I-SP-A 190 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-----~-p~-~ 190 (296)
.++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+. . .. |
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARA-AGAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHH-TCSSCEEECCHHHHHTTCSCCCCCE
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHH-hcccccchhhHHhhcccccccCCCc
Confidence 4455444 456689999999999999999888 679999999 899998884 47788888877651 1 23 9
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh------cCccccC
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL------LTGTERD 264 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~rt 264 (296)
|+|++.+++| .++. ..+|++++++|+| ||++++.+.......... + ...+........ .....++
T Consensus 118 D~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (227)
T 3e8s_A 118 DLICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHPWSVADGD-Y--QDGWREESFAGFAGDWQPMPWYFRT 188 (227)
T ss_dssp EEEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-C--SCEEEEECCTTSSSCCCCEEEEECC
T ss_pred cEEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCccccCccc-c--ccccchhhhhccccCcccceEEEec
Confidence 9999999999 5554 4889999999999 899988876543322110 0 000100000000 1123459
Q ss_pred HHHHHHHHHhcCCceeEEEE
Q 022515 265 EKEWTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~~~~ 284 (296)
.++|.++|+++||+++++..
T Consensus 189 ~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 189 LASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEEec
Confidence 99999999999999998876
No 71
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.65 E-value=9.8e-16 Score=130.83 Aligned_cols=145 Identities=11% Similarity=0.077 Sum_probs=105.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWIL 199 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vl 199 (296)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 466789999999999999999887 579999999 899988765 35789999999987 554 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhh-hhhhhhhhhhhc----CccccCHHHHHHHHHh
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET-QLFFDMLMMVLL----TGTERDEKEWTKLFTY 274 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~g~~rt~~e~~~ll~~ 274 (296)
|++++. ..+|++++++|+| ||++++. ...++ .. +.... ..+..+...... ....++.+++.+++++
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WDQAE--AS-PEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRR 185 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EEEEC--CC-HHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ecCCC--cc-HHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHH
Confidence 999865 4789999999999 8988887 22211 11 10000 111111110000 1134578999999999
Q ss_pred cCCceeEEE
Q 022515 275 AGFSDYKII 283 (296)
Q Consensus 275 aGf~~~~~~ 283 (296)
+||+++.+.
T Consensus 186 ~Gf~~~~~~ 194 (263)
T 2yqz_A 186 LGLKPRTRE 194 (263)
T ss_dssp TTCCCEEEE
T ss_pred cCCCcceEE
Confidence 999977653
No 72
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.65 E-value=1e-15 Score=130.43 Aligned_cols=134 Identities=9% Similarity=-0.028 Sum_probs=105.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C---------------------CCCeeEEeccCCC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D---------------------LANLKYVGGDMFE 185 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---------------------~~ri~~~~~D~~~ 185 (296)
.++.+|||+|||+|..+..|++. +.+++++|+ +.+++.|++ . ..+|+++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46689999999999999999987 679999999 999988754 2 2689999999998
Q ss_pred -CC---CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCcc
Q 022515 186 -AI---SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGT 261 (296)
Q Consensus 186 -~~---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 261 (296)
+. ..||+|+...++|++++++...++++++++|+| ||+++++....+..... ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~~-----------------g~~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKHA-----------------GPPF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSCC-----------------CSSC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccCC-----------------CCCC
Confidence 43 359999999999999988778899999999999 99987666543321100 0011
Q ss_pred ccCHHHHHHHHHhcCCceeEEEEc
Q 022515 262 ERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 262 ~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
..+.+|+.++++. +|+++.+...
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 2489999999988 5998776543
No 73
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.63 E-value=2e-15 Score=131.43 Aligned_cols=141 Identities=14% Similarity=0.131 Sum_probs=96.7
Q ss_pred CCCEEEEecCCchHHHH----HHHHHCCCCeE--Eeccc-hhHhhccCC---C---CCCeeE--EeccCCC-C------C
Q 022515 130 GLNSLVDVGGGIGTAAK----AIAKAFPKLEC--TCFDL-PHVVNGLDS---D---LANLKY--VGGDMFE-A------I 187 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~---~---~~ri~~--~~~D~~~-~------~ 187 (296)
++.+|||||||+|.++. .++.++|+.++ +++|. ++|++.|++ . ..++++ ..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45799999999997654 44556788854 99999 899988765 1 134444 4555533 2 2
Q ss_pred C--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhc--Ccccc
Q 022515 188 S--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLL--TGTER 263 (296)
Q Consensus 188 p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~r 263 (296)
+ .||+|++.+++|+++|.. +.|++++++||| ||++++.+... + . .+.. .+......... ....+
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~-~---~-~~~~--~~~~~~~~~~~~~~~~~~ 199 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLIIVVSG-S---S-GWDK--LWKKYGSRFPQDDLCQYI 199 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEEEECT-T---S-HHHH--HHHHHGGGSCCCTTCCCC
T ss_pred CCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCC---CcEEEEEEecC-C---c-cHHH--HHHHHHHhccCCCcccCC
Confidence 2 499999999999999875 789999999999 99999986431 1 1 1111 11111100000 12346
Q ss_pred CHHHHHHHHHhcCCceeEE
Q 022515 264 DEKEWTKLFTYAGFSDYKI 282 (296)
Q Consensus 264 t~~e~~~ll~~aGf~~~~~ 282 (296)
+.++|.++|+++||+++..
T Consensus 200 ~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHCCCceEEE
Confidence 8999999999999998764
No 74
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.6e-15 Score=130.12 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=103.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC----C---CCCeeEEeccCCC-CC--------Ccc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS----D---LANLKYVGGDMFE-AI--------SPA 190 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~---~~ri~~~~~D~~~-~~--------p~~ 190 (296)
.++.+|||||||+|.++..+++.+ +..+++++|+ +.+++.|++ . ..+++++.+|+.+ +. ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8999999999 999998875 2 6799999999988 43 249
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh-cCccc---cCHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL-LTGTE---RDEK 266 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---rt~~ 266 (296)
|+|++..++|++ + ...+|++++++|+| ||.+++.+...+.....+ .....+.-..... ..+.. ...+
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~w~~p~~~ 185 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRK---DGTIAIWGYADPIFPDYP---EFDDLMIEVPYGKQGLGPYWEQPGRS 185 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEE---EEEEEEEEEEEEECTTCG---GGTTHHHHHHHCTTTTGGGSCTTHHH
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCC---CcEEEEEecCCccccCcH---HHHHHHHHhccCcccccchhhchhhH
Confidence 999999999999 4 45899999999999 999998665433221111 1111111111100 01111 3456
Q ss_pred HHHHHHHhcCCc
Q 022515 267 EWTKLFTYAGFS 278 (296)
Q Consensus 267 e~~~ll~~aGf~ 278 (296)
.+.++++++||.
T Consensus 186 ~~~~~l~~~gfp 197 (299)
T 3g5t_A 186 RLRNMLKDSHLD 197 (299)
T ss_dssp HHHTTTTTCCCC
T ss_pred HHHHhhhccCCC
Confidence 779999999993
No 75
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.63 E-value=3e-15 Score=124.94 Aligned_cols=157 Identities=16% Similarity=0.135 Sum_probs=109.8
Q ss_pred ccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC---C
Q 022515 111 SDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE---A 186 (296)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~---~ 186 (296)
.+.......+++.++ .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++.. .++..+|+.+ +
T Consensus 16 ~~~~~~~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~--~~~~~~d~~~~~~~ 88 (230)
T 3cc8_A 16 HYYNAVNPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL--DHVVLGDIETMDMP 88 (230)
T ss_dssp ----CCCHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS--SEEEESCTTTCCCC
T ss_pred hHHHHHHHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC--CcEEEcchhhcCCC
Confidence 333334455555543 46689999999999999999988 4 89999999 89998887422 3788899875 2
Q ss_pred CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhh-hhhh------hhh
Q 022515 187 IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFF-DMLM------MVL 257 (296)
Q Consensus 187 ~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~~~------~~~ 257 (296)
.+ .||+|++..++|++++.. .+|++++++|+| ||++++........ ....... ..+. ...
T Consensus 89 ~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 157 (230)
T 3cc8_A 89 YEEEQFDCVIFGDVLEHLFDPW--AVIEKVKPYIKQ---NGVILASIPNVSHI------SVLAPLLAGNWTYTEYGLLDK 157 (230)
T ss_dssp SCTTCEEEEEEESCGGGSSCHH--HHHHHTGGGEEE---EEEEEEEEECTTSH------HHHHHHHTTCCCCBSSSTTBT
T ss_pred CCCCccCEEEECChhhhcCCHH--HHHHHHHHHcCC---CCEEEEEeCCcchH------HHHHHHhcCCceeccCCCCCc
Confidence 33 499999999999998764 889999999999 89988876432110 0000000 0000 000
Q ss_pred cCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 258 LTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
.....++.++|.++++++||+++++...
T Consensus 158 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 158 THIRFFTFNEMLRMFLKAGYSISKVDRV 185 (230)
T ss_dssp TCCCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ceEEEecHHHHHHHHHHcCCeEEEEEec
Confidence 1124569999999999999999888765
No 76
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.62 E-value=1.9e-15 Score=125.86 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=102.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCch
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDE 205 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~ 205 (296)
++.+|||||||+|.++..+++. +++|+ +.+++.+++. +++++.+|+.+ +.+ .||+|++.+++|++++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP 118 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH
Confidence 3789999999999999887654 99999 8999888733 79999999887 554 49999999999999875
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhh-hhh--hcCccccCHHHHHHHHHhcCCceeEE
Q 022515 206 ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML-MMV--LLTGTERDEKEWTKLFTYAGFSDYKI 282 (296)
Q Consensus 206 ~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~g~~rt~~e~~~ll~~aGf~~~~~ 282 (296)
. .+|+++.++|+| ||++++.+..... +. ...+... ... ......++.++|.++|+++||+++++
T Consensus 119 ~--~~l~~~~~~L~p---gG~l~i~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 119 E--RALKEAYRILKK---GGYLIVGIVDRES-----FL---GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp H--HHHHHHHHHEEE---EEEEEEEEECSSS-----HH---HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred H--HHHHHHHHHcCC---CcEEEEEEeCCcc-----HH---HHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 4 789999999999 8998887753211 11 1111110 000 01234569999999999999999888
Q ss_pred EEc
Q 022515 283 IPI 285 (296)
Q Consensus 283 ~~~ 285 (296)
...
T Consensus 186 ~~~ 188 (219)
T 1vlm_A 186 VQT 188 (219)
T ss_dssp EEE
T ss_pred ecc
Confidence 765
No 77
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.60 E-value=4.8e-15 Score=122.07 Aligned_cols=132 Identities=11% Similarity=0.112 Sum_probs=107.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC-CccceeEehhhhc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI-SPADAVLLKWILH 200 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~-p~~D~v~~~~vlh 200 (296)
..+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ...++++..+|+.+.. ..||+|++...+|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 34678999999999999999776 56779999999 999988876 2234999999998843 3699999988776
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
+ ...+++++.+.|+| ||++++.+.... +.+++.++++++||+.+
T Consensus 137 ~-----~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 137 I-----LLDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQID 180 (205)
T ss_dssp H-----HHHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEE
T ss_pred H-----HHHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceE
Confidence 4 35789999999999 898888654321 46788899999999999
Q ss_pred EEEEcCCcceEEEEeC
Q 022515 281 KIIPILGLRSLIEVYP 296 (296)
Q Consensus 281 ~~~~~~~~~~vi~~~~ 296 (296)
++.....+.+++.-+|
T Consensus 181 ~~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 181 LKMRAGRWIGLAISRK 196 (205)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EeeccCCEEEEEEecc
Confidence 9988888888877654
No 78
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.60 E-value=8.1e-15 Score=121.56 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=99.0
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeE
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVL 194 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~ 194 (296)
.++..+.. ..+..+|||||||+|.++..+. .+++++|+ +. ++++..+|+.+ +.+ .||+|+
T Consensus 57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~----------~~~~~~~d~~~~~~~~~~fD~v~ 120 (215)
T 2zfu_A 57 RIARDLRQ-RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL----------DPRVTVCDMAQVPLEDESVDVAV 120 (215)
T ss_dssp HHHHHHHT-SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS----------STTEEESCTTSCSCCTTCEEEEE
T ss_pred HHHHHHhc-cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC----------CceEEEeccccCCCCCCCEeEEE
Confidence 34444431 3456899999999999998772 68999998 44 57888999887 554 499999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY 274 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~ 274 (296)
+..++| +++ ...+|++++++|+| ||++++.+.... ..+.++|.+++++
T Consensus 121 ~~~~l~-~~~--~~~~l~~~~~~L~~---gG~l~i~~~~~~--------------------------~~~~~~~~~~l~~ 168 (215)
T 2zfu_A 121 FCLSLM-GTN--IRDFLEEANRVLKP---GGLLKVAEVSSR--------------------------FEDVRTFLRAVTK 168 (215)
T ss_dssp EESCCC-SSC--HHHHHHHHHHHEEE---EEEEEEEECGGG--------------------------CSCHHHHHHHHHH
T ss_pred Eehhcc-ccC--HHHHHHHHHHhCCC---CeEEEEEEcCCC--------------------------CCCHHHHHHHHHH
Confidence 999998 444 45889999999999 999999874210 1178999999999
Q ss_pred cCCceeEEEEcCCcceEEEEeC
Q 022515 275 AGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 275 aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
+||+++......+...++.++|
T Consensus 169 ~Gf~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 169 LGFKIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp TTEEEEEEECCSTTCEEEEEEE
T ss_pred CCCEEEEEecCCCeEEEEEEEe
Confidence 9999988766665566666553
No 79
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.60 E-value=1.2e-15 Score=125.78 Aligned_cols=151 Identities=11% Similarity=0.025 Sum_probs=108.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWIL 199 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vl 199 (296)
..+..+|||||||+|.++..++.. ++.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 445789999999999986555544 4679999999 899988875 24679999999988 554 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh-hhhcCccccCHHHHHHHHHhcCCc
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM-MVLLTGTERDEKEWTKLFTYAGFS 278 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~rt~~e~~~ll~~aGf~ 278 (296)
||++.++...++++++++|+| ||++++.+...++.............+.... ........++.+++.++++++||.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 176 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL 176 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCce
Confidence 999877788999999999999 8999988876544321100000000000000 000112456999999999999987
Q ss_pred eeEE
Q 022515 279 DYKI 282 (296)
Q Consensus 279 ~~~~ 282 (296)
..+.
T Consensus 177 ~~~~ 180 (209)
T 2p8j_A 177 FKED 180 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 6544
No 80
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.59 E-value=7.7e-15 Score=127.14 Aligned_cols=142 Identities=16% Similarity=0.165 Sum_probs=109.8
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-cc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~ 190 (296)
..+++.++ ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...++++..+|+.+ +.+ .|
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 34445444 446789999999999999999988 669999999 899988876 23389999999988 444 59
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK 270 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 270 (296)
|+|++..++|+++++....+|++++++|+| ||.++++.....+....+ ......++.+++.+
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 247 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELKE 247 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHHH
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCCC---------------CCccccCCHHHHHH
Confidence 999999999999988888999999999999 999888776554432211 00122347788888
Q ss_pred HHHhcCCceeEEE
Q 022515 271 LFTYAGFSDYKII 283 (296)
Q Consensus 271 ll~~aGf~~~~~~ 283 (296)
+++. |+++...
T Consensus 248 ~~~~--~~~~~~~ 258 (286)
T 3m70_A 248 YYKD--WEFLEYN 258 (286)
T ss_dssp HTTT--SEEEEEE
T ss_pred HhcC--CEEEEEE
Confidence 8865 8877664
No 81
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.59 E-value=6.1e-15 Score=128.17 Aligned_cols=155 Identities=14% Similarity=0.064 Sum_probs=109.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC-C--ccceeEeh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI-S--PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~-p--~~D~v~~~ 196 (296)
..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ...+++++.+|+.+ +. + .||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999998776 4569999999 899988875 23579999999988 54 2 49999999
Q ss_pred hhhcc--CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCC--------CCCch----------hh-hhhhhhhhhh
Q 022515 197 WILHD--WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKK--------GDDKS----------IE-TQLFFDMLMM 255 (296)
Q Consensus 197 ~vlh~--~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~--------~~~~~----------~~-~~~~~~~~~~ 255 (296)
.++|+ .+.++...+|++++++|+| ||++++......... ....+ .. ....+.+...
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 99998 5666778999999999999 899888775421100 00000 00 0000000000
Q ss_pred hh---cCccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515 256 VL---LTGTERDEKEWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 256 ~~---~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 286 (296)
.. .....++.+++.++++++||+++++....
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 00 11234589999999999999999887653
No 82
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.59 E-value=6.7e-16 Score=134.21 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=88.5
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC-C
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE-A 186 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~-~ 186 (296)
..+...++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...++.+..+|+.+ +
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 34444444 456789999999999999999998 459999999 899988854 13678899999887 4
Q ss_pred ---CC--ccceeEeh-hhhccCCc-----hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 187 ---IS--PADAVLLK-WILHDWND-----EECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 187 ---~p--~~D~v~~~-~vlh~~~d-----~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.+ .||+|++. +++||+++ ++...+|++++++|+| ||++++...
T Consensus 123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 176 (293)
T 3thr_A 123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHR 176 (293)
T ss_dssp HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 33 59999998 89999998 6677999999999999 888887764
No 83
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.59 E-value=2.1e-14 Score=118.11 Aligned_cols=122 Identities=13% Similarity=0.199 Sum_probs=99.4
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---C
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---S 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---p 188 (296)
..++..+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..++++++.+|+.+.. +
T Consensus 30 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 30 AVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 34455555 66778999999999999999999999999999999 999988876 3478999999997732 4
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW 268 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~ 268 (296)
.||+|++...++ ....+++++.+.|+| ||++++...... +.+++
T Consensus 108 ~~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~~~----------------------------~~~~~ 151 (204)
T 3e05_A 108 DPDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVTLD----------------------------TLTKA 151 (204)
T ss_dssp CCSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECBHH----------------------------HHHHH
T ss_pred CCCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEecccc----------------------------cHHHH
Confidence 699999988775 345889999999999 999888653210 45678
Q ss_pred HHHHHhcCC
Q 022515 269 TKLFTYAGF 277 (296)
Q Consensus 269 ~~ll~~aGf 277 (296)
.++++++||
T Consensus 152 ~~~l~~~g~ 160 (204)
T 3e05_A 152 VEFLEDHGY 160 (204)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHCCC
Confidence 889999998
No 84
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.59 E-value=2e-14 Score=120.70 Aligned_cols=141 Identities=14% Similarity=0.165 Sum_probs=102.5
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC-----C-CccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA-----I-SPADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~-----~-p~~D~v~~~~ 197 (296)
+.++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ...++.++.+|+.++ . ..||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55778999999999999999999988789999999 888876654 347899999998762 2 2499998
Q ss_pred hhccCCch-HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515 198 ILHDWNDE-ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG 276 (296)
Q Consensus 198 vlh~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG 276 (296)
|++++. ....+++++.+.|+| ||++++. .........++ . .. ...+++. +|+++|
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~--~-~~--------------~~~~~l~-~l~~~G 204 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTKD--P-KE--------------IFKEQKE-ILEAGG 204 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSSC--H-HH--------------HHHHHHH-HHHHHT
T ss_pred --EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCCC--H-HH--------------hhHHHHH-HHHHCC
Confidence 565554 335679999999999 8998887 22111111100 0 00 0236787 899999
Q ss_pred CceeEEEEcCCc---ceEEEEe
Q 022515 277 FSDYKIIPILGL---RSLIEVY 295 (296)
Q Consensus 277 f~~~~~~~~~~~---~~vi~~~ 295 (296)
|+.+++..+..+ ..++.++
T Consensus 205 f~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 205 FKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEEEEEECTTTSTTEEEEEEE
T ss_pred CEEEEEEccCCCccceEEEEEE
Confidence 999998887554 4555554
No 85
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.58 E-value=4.9e-15 Score=126.45 Aligned_cols=98 Identities=11% Similarity=0.147 Sum_probs=84.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND 204 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d 204 (296)
....+|||||||+|.++..|++.+ .+++++|+ +.|++.|+ ...+++++.+|+.+ +++ .||+|++..++|+++.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~-~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~ 114 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQAL-RHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL 114 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCC-CCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhh-hcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH
Confidence 345799999999999999999875 58999999 99999998 67789999999988 665 4999999999987764
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
+ +++++++++||| ||++++.....+
T Consensus 115 ~---~~~~e~~rvLkp---gG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 D---RFWAELRRVARP---GAVFAAVTYGLT 139 (257)
T ss_dssp H---HHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred H---HHHHHHHHHcCC---CCEEEEEECCCC
Confidence 3 679999999999 999998876443
No 86
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.58 E-value=3e-14 Score=120.96 Aligned_cols=98 Identities=21% Similarity=0.332 Sum_probs=82.0
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEeh-hhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLK-WIL 199 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~-~vl 199 (296)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++. ..+
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCch
Confidence 356689999999999999999987 679999999 999988875 34579999999988 544 59999986 466
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
|+++.++..++|++++++|+| ||.+++.
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 777777788999999999999 8877653
No 87
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.58 E-value=1.3e-15 Score=130.25 Aligned_cols=141 Identities=14% Similarity=0.106 Sum_probs=104.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCC-------------------------------
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLA------------------------------- 174 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~------------------------------- 174 (296)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ...
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4567999999999999998887755 58999999 899988865 221
Q ss_pred -Ce-eEEeccCCC-CC------CccceeEehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCch
Q 022515 175 -NL-KYVGGDMFE-AI------SPADAVLLKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKS 243 (296)
Q Consensus 175 -ri-~~~~~D~~~-~~------p~~D~v~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~ 243 (296)
++ +++.+|+.+ +. ..||+|++..++|+.+.. +...+|++++++|+| ||++++.+...... +
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~-----~ 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKSSY-----Y 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE-----E
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCCce-----E
Confidence 27 999999987 22 249999999999955432 556899999999999 99998887432110 0
Q ss_pred hhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515 244 IETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 244 ~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 286 (296)
... + ........+.+++.++|+++||+++++...+
T Consensus 206 -~~~---~----~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 -MIG---E----QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -EET---T----EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -EcC---C----ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000 0 0011234488999999999999999887654
No 88
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.57 E-value=1.5e-14 Score=132.03 Aligned_cols=151 Identities=10% Similarity=0.015 Sum_probs=107.1
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC------CC-
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE------AI- 187 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~------~~- 187 (296)
....+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.|++. .+......+.. +.
T Consensus 95 ~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~ 168 (416)
T 4e2x_A 95 LARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK--GIRVRTDFFEKATADDVRRT 168 (416)
T ss_dssp HHHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT--TCCEECSCCSHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc--CCCcceeeechhhHhhcccC
Confidence 3455666666 567789999999999999999987 559999999 8999988742 23333222221 12
Q ss_pred -CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHH
Q 022515 188 -SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEK 266 (296)
Q Consensus 188 -p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~ 266 (296)
..||+|++.+++||+++. ..+|++++++|+| ||++++........ .....+......+...++.+
T Consensus 169 ~~~fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~---------~~~~~~~~~~~~~~~~~s~~ 234 (416)
T 4e2x_A 169 EGPANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPYLGDI---------VAKTSFDQIFDEHFFLFSAT 234 (416)
T ss_dssp HCCEEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEECHHHH---------HHHTCGGGCSTTCCEECCHH
T ss_pred CCCEEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCChHHh---------hhhcchhhhhhhhhhcCCHH
Confidence 259999999999999865 4889999999999 88888765432110 00000000001233456999
Q ss_pred HHHHHHHhcCCceeEEEEcC
Q 022515 267 EWTKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 267 e~~~ll~~aGf~~~~~~~~~ 286 (296)
+|.++++++||+++++...+
T Consensus 235 ~l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 235 SVQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEEEcc
Confidence 99999999999999988765
No 89
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.57 E-value=1.4e-14 Score=123.46 Aligned_cols=143 Identities=21% Similarity=0.233 Sum_probs=103.4
Q ss_pred CCCCEEEEecCCc--hHHHHHH-HHHCCCCeEEeccc-hhHhhccCC-C----CCCeeEEeccCCCC-C--------Ccc
Q 022515 129 EGLNSLVDVGGGI--GTAAKAI-AKAFPKLECTCFDL-PHVVNGLDS-D----LANLKYVGGDMFEA-I--------SPA 190 (296)
Q Consensus 129 ~~~~~vLDvGgG~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~-~----~~ri~~~~~D~~~~-~--------p~~ 190 (296)
.+..+|||||||+ +.++.++ .+..|+.+++++|. |.|++.|++ . ..+++|+.+|+.+. . ..+
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3568999999997 3344444 45689999999999 999999986 1 34799999999873 1 125
Q ss_pred c-----eeEehhhhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccC
Q 022515 191 D-----AVLLKWILHDWNDEE-CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERD 264 (296)
Q Consensus 191 D-----~v~~~~vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt 264 (296)
| ++++..+||+.++++ ...+|++++++|+| ||+|++.+...+.. +. ......+.+.........||
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~----p~-~~~~~~~~~~~~g~p~~~rs 228 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFA----PQ-EVGRVAREYAARNMPMRLRT 228 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTS----HH-HHHHHHHHHHHTTCCCCCCC
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCC----HH-HHHHHHHHHHhcCCCCccCC
Confidence 5 688999999999876 47899999999999 99999888765421 11 11122222222222345689
Q ss_pred HHHHHHHHHhcCCceeE
Q 022515 265 EKEWTKLFTYAGFSDYK 281 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~ 281 (296)
.+|+.++|. ||+.++
T Consensus 229 ~~ei~~~f~--Glelve 243 (277)
T 3giw_A 229 HAEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHHTTT--TSEECT
T ss_pred HHHHHHHhC--CCcccC
Confidence 999999995 998654
No 90
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.56 E-value=1.6e-14 Score=120.15 Aligned_cols=144 Identities=12% Similarity=0.047 Sum_probs=96.6
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhc----cCC-----CCCCeeEEeccCCC-CCC-ccceeE-
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNG----LDS-----DLANLKYVGGDMFE-AIS-PADAVL- 194 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~-----~~~ri~~~~~D~~~-~~p-~~D~v~- 194 (296)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ ...+++++.+|+.+ +.+ +.|.|+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 56678999999999999999999999999999999 887664 222 34589999999988 544 125544
Q ss_pred --ehhhh--ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515 195 --LKWIL--HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK 270 (296)
Q Consensus 195 --~~~vl--h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 270 (296)
....+ |+.++. ..+|++++++||| ||++++........... .. .... .........+++..
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~---~~---~~~~----~~~~~~~~~~~l~~ 169 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVALNLHAWRPSV---PE---VGEH----PEPTPDSADEWLAP 169 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEEEGGGBTTBC---GG---GTTC----CCCCHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEeccccccccc---cc---cccC----CccchHHHHHHHHH
Confidence 23333 255554 3789999999999 88888743221111000 00 0000 00011123456888
Q ss_pred HHHhcCCceeEEEEcC
Q 022515 271 LFTYAGFSDYKIIPIL 286 (296)
Q Consensus 271 ll~~aGf~~~~~~~~~ 286 (296)
+++++||++.++..+.
T Consensus 170 ~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 170 RYAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCCceeeeccc
Confidence 9999999998877653
No 91
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.56 E-value=6.8e-14 Score=120.70 Aligned_cols=136 Identities=19% Similarity=0.221 Sum_probs=107.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC--CccceeEeh----
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI--SPADAVLLK---- 196 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~--p~~D~v~~~---- 196 (296)
.+..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|++++. ..||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 3557999999999999999999999999999999 899988875 3358999999999854 259999997
Q ss_pred ---------hhhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh
Q 022515 197 ---------WILHDWND----------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL 257 (296)
Q Consensus 197 ---------~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (296)
.++++.|. +....+++++.+.|+| ||++++... .
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~~------~------------------ 240 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEHG------W------------------ 240 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC------S------------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC------c------------------
Confidence 45555442 3446899999999999 787776421 0
Q ss_pred cCccccCHHHHHHHHHhcCCceeEEEE-cCCcceEEEEeC
Q 022515 258 LTGTERDEKEWTKLFTYAGFSDYKIIP-ILGLRSLIEVYP 296 (296)
Q Consensus 258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 296 (296)
.+.+++.++++++||+.+++.. ..+...++.+++
T Consensus 241 -----~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 241 -----QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp -----SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred -----hHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 1567889999999999887765 456667777653
No 92
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.56 E-value=7.3e-14 Score=111.75 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=100.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCC--ccceeEehhhhccCCch
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAIS--PADAVLLKWILHDWNDE 205 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~~~d~ 205 (296)
.++.+|||+|||+|.++..+++.. +++++|+ +.+++. ..+++++.+|+.++.+ .||+|+++..+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~----~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES----HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT----CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc----ccCCeEEECChhhhcccCCCCEEEECCCCccCCcc
Confidence 355699999999999999999886 9999999 888887 4679999999998554 49999998888865544
Q ss_pred -------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515 206 -------ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS 278 (296)
Q Consensus 206 -------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~ 278 (296)
+...+++++.+.+ | ||++++.+... .+.+++.++++++||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~ 142 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYG 142 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCE
T ss_pred ccccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCc
Confidence 3457889999999 8 99998877321 0567889999999999
Q ss_pred eeEEEEc-CCcceEEE
Q 022515 279 DYKIIPI-LGLRSLIE 293 (296)
Q Consensus 279 ~~~~~~~-~~~~~vi~ 293 (296)
...+... .+...++.
T Consensus 143 ~~~~~~~~~~~e~~~~ 158 (170)
T 3q87_B 143 TRILKVRKILGETVYI 158 (170)
T ss_dssp EEEEEEEECSSSEEEE
T ss_pred EEEEEeeccCCceEEE
Confidence 8887765 34444443
No 93
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.55 E-value=2.2e-15 Score=129.22 Aligned_cols=140 Identities=16% Similarity=0.101 Sum_probs=98.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---C-C------------------------------
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---D-L------------------------------ 173 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~-~------------------------------ 173 (296)
.++.+|||||||+|.++..++... ..+++++|+ +.+++.|++ . .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 456799999999998876555442 126999999 899987654 1 0
Q ss_pred CCee-EEeccCCCC-------CCccceeEehhhhccC-C-chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCch
Q 022515 174 ANLK-YVGGDMFEA-------ISPADAVLLKWILHDW-N-DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKS 243 (296)
Q Consensus 174 ~ri~-~~~~D~~~~-------~p~~D~v~~~~vlh~~-~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~ 243 (296)
.++. ++.+|+.+. .+.||+|+++.+||+. + .++..++|++++++||| ||++++.+...... +
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~~~~-----~ 204 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPS-----Y 204 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE-----E
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeecCcc-----c
Confidence 1233 889999872 2359999999999985 3 24567899999999999 99998886432110 0
Q ss_pred hhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 244 IETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 244 ~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
...- ..+.....+.+++.++|+++||+++++...
T Consensus 205 -----~~g~---~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 205 -----MVGK---REFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp -----EETT---EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -----eeCC---eEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0000 001122348999999999999999888764
No 94
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.54 E-value=3.7e-14 Score=116.35 Aligned_cols=134 Identities=10% Similarity=0.019 Sum_probs=101.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhhcc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWILHD 201 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~ 201 (296)
+. +|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...++++..+|+.+ +.+ .||+|++. +++
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 44 9999999999999998886 569999999 899988875 23489999999988 544 49999985 345
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK 281 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 281 (296)
++.++...+|++++++|+| ||++++.+........ . ... .......++.+++.++++ ||+++.
T Consensus 105 ~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~-------~--~~~---~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKP---GGVFILEGFAPEQLQY-------N--TGG---PKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCS---SEEEEEEEECTTTGGG-------T--SCC---SSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred CCHHHHHHHHHHHHHhcCC---CcEEEEEEeccccccC-------C--CCC---CCcceeecCHHHHHHHhc--CceEEE
Confidence 6767778999999999999 8998888764332100 0 000 001123569999999999 999988
Q ss_pred EEEc
Q 022515 282 IIPI 285 (296)
Q Consensus 282 ~~~~ 285 (296)
+...
T Consensus 168 ~~~~ 171 (202)
T 2kw5_A 168 ANNL 171 (202)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 95
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.53 E-value=4.7e-15 Score=128.81 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=97.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CC-----------C---------------------
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DL-----------A--------------------- 174 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~-----------~--------------------- 174 (296)
++.+|||||||+|.++ .++...+..+++++|+ +.+++.|++ .. .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999944 3444445669999999 899987654 10 0
Q ss_pred -CeeEEeccCCC--C-----CC--ccceeEehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc
Q 022515 175 -NLKYVGGDMFE--A-----IS--PADAVLLKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK 242 (296)
Q Consensus 175 -ri~~~~~D~~~--~-----~p--~~D~v~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~ 242 (296)
.++++.+|+.+ + .+ .||+|++..++|+.+++ +...+|++++++||| ||++++.+......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~~~----- 221 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESW----- 221 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCE-----
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCcce-----
Confidence 14566678876 2 22 29999999999985533 567899999999999 99999876432110
Q ss_pred hhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 243 SIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 243 ~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
+ .. .+. ......++.++|.++|+++||+++++...
T Consensus 222 ~-~~---~~~----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 222 Y-LA---GEA----RLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp E-EE---TTE----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred E-Ec---CCe----eeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 0 00 000 00122458999999999999999887654
No 96
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.52 E-value=2.2e-14 Score=120.05 Aligned_cols=147 Identities=12% Similarity=0.078 Sum_probs=92.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hh-Hhhcc---CC-----CCCCeeEEeccCCC-CCCccceeEehh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PH-VVNGL---DS-----DLANLKYVGGDMFE-AISPADAVLLKW 197 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a---~~-----~~~ri~~~~~D~~~-~~p~~D~v~~~~ 197 (296)
.++.+|||||||+|.++..+++++|+.+++++|+ ++ +++.| ++ ...+++++.+|..+ +...+|.|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4667999999999999999999999999999999 45 44443 54 34579999999887 322246555544
Q ss_pred hhccCCch------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHH
Q 022515 198 ILHDWNDE------ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKL 271 (296)
Q Consensus 198 vlh~~~d~------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 271 (296)
+.+.|+.. ....+|++++++||| ||++++....... ....++ . ..... .........+++.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~-~~~~~~-~---~~~~~---~~~~~~~~~~el~~~ 171 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDS-YEEAEI-K---KRGLP---LLSKAYFLSEQYKAE 171 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEecccc-chhchh-h---hcCCC---CCChhhcchHHHHHH
Confidence 44333321 113679999999999 9999884433322 110000 0 00000 000001122469999
Q ss_pred HHhcCCceeEEEEcC
Q 022515 272 FTYAGFSDYKIIPIL 286 (296)
Q Consensus 272 l~~aGf~~~~~~~~~ 286 (296)
++++||++..+...+
T Consensus 172 l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 172 LSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHTCEEEEEEEEC
T ss_pred HHHcCCCeeeeeecC
Confidence 999999988876654
No 97
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.52 E-value=2.2e-14 Score=118.51 Aligned_cols=130 Identities=13% Similarity=0.075 Sum_probs=95.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND 204 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d 204 (296)
++.+|||||||+|.++..+ +. +++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++.+++|++++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 6789999999999999877 45 8999999 89999887633789999999988 554 4999999999999986
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhh-hhhhcCccccCHHHHHHHHHhcC
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML-MMVLLTGTERDEKEWTKLFTYAG 276 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~rt~~e~~~ll~~aG 276 (296)
.. ++|++++++|+| ||++++.+..... ++.......... .......+.++.+++.++++ |
T Consensus 111 ~~--~~l~~~~~~L~p---gG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 111 VE--RVLLEARRVLRP---GGALVVGVLEALS-----PWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp HH--HHHHHHHHHEEE---EEEEEEEEECTTS-----HHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred HH--HHHHHHHHHcCC---CCEEEEEecCCcC-----cHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 54 889999999999 8998888753221 111100000000 00001234569999999999 7
No 98
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.52 E-value=2.7e-14 Score=118.41 Aligned_cols=100 Identities=11% Similarity=0.235 Sum_probs=85.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC-ccceeEehhhhcc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS-PADAVLLKWILHD 201 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~ 201 (296)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4566899999999999999999884 58999999 899988876 34589999999998 422 5999999999999
Q ss_pred CCc-hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 202 WND-EECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 202 ~~d-~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+++ +...++|++++++|+| ||.+++...
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~ 155 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSA 155 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 997 4556899999999999 888887664
No 99
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.52 E-value=5e-14 Score=113.00 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=95.4
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC----
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI---- 187 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~---- 187 (296)
.++..+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++ ++.+|..+.+
T Consensus 16 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 16 LAISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 3344444 56678999999999999999999999999999999 889988875 23478 8889886632
Q ss_pred CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515 188 SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267 (296)
Q Consensus 188 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 267 (296)
+.||+|++..++|+ ..+++++.+.|+| ||++++.+...+ +..+
T Consensus 93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 135 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAVTVE----------------------------SEQM 135 (178)
T ss_dssp SCCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEECSHH----------------------------HHHH
T ss_pred CCCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEeeccc----------------------------cHHH
Confidence 35999999999986 3689999999999 999887663211 3345
Q ss_pred HHHHHHhcCCceeEE
Q 022515 268 WTKLFTYAGFSDYKI 282 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~ 282 (296)
+.+++++.|++..++
T Consensus 136 ~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 136 LWALRKQFGGTISSF 150 (178)
T ss_dssp HHHHHHHHCCEEEEE
T ss_pred HHHHHHHcCCeeEEE
Confidence 667778888776554
No 100
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.51 E-value=1.4e-14 Score=119.70 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=88.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCC-------CccceeEeh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAI-------SPADAVLLK 196 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~-------p~~D~v~~~ 196 (296)
.++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|+.++. ..||+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5678999999999999999999999999999999 999998886 1127899999988732 359999995
Q ss_pred h------hhccCCchHH------------------HHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh
Q 022515 197 W------ILHDWNDEEC------------------VKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM 252 (296)
Q Consensus 197 ~------vlh~~~d~~~------------------~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~ 252 (296)
- .+++++.+.. ..+++++++.|+| ||++++++...
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~------------------ 167 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVGH------------------ 167 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECTT------------------
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEECC------------------
Confidence 3 3333333222 6789999999999 99966665310
Q ss_pred hhhhhcCccccCHHHHHHHHH--hcCCceeEEEEcC-CcceEEEEe
Q 022515 253 LMMVLLTGTERDEKEWTKLFT--YAGFSDYKIIPIL-GLRSLIEVY 295 (296)
Q Consensus 253 ~~~~~~~g~~rt~~e~~~ll~--~aGf~~~~~~~~~-~~~~vi~~~ 295 (296)
...+++.++++ ++||+.+++.+.. +...++.++
T Consensus 168 ----------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 168 ----------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp ----------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred ----------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 04567888899 9999988877653 444555543
No 101
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.50 E-value=2e-13 Score=110.67 Aligned_cols=142 Identities=15% Similarity=0.315 Sum_probs=106.9
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCC--CeeEEeccCCCCCC-
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLA--NLKYVGGDMFEAIS- 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~--ri~~~~~D~~~~~p- 188 (296)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ... |+++..+|+.+..+
T Consensus 42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 44555555 557789999999999999999888 779999999 899888875 223 59999999988443
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 267 (296)
.||+|++...+|+ ..+....+++++.+.|+| ||++++...... ...+
T Consensus 118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 165 (194)
T 1dus_A 118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLKD---NGEIWVVIQTKQ----------------------------GAKS 165 (194)
T ss_dssp SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEE---EEEEEEEEESTH----------------------------HHHH
T ss_pred CCceEEEECCCccc-chhHHHHHHHHHHHHcCC---CCEEEEEECCCC----------------------------ChHH
Confidence 5999999888774 345567899999999999 898888764210 1235
Q ss_pred HHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515 268 WTKLFTYAGFSDYKIIPILGLRSLIEVYP 296 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 296 (296)
+.+.+++. |..+++........++.++|
T Consensus 166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 166 LAKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 66777777 66677766655556666554
No 102
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.48 E-value=7.7e-15 Score=123.81 Aligned_cols=134 Identities=15% Similarity=0.061 Sum_probs=92.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC---CCC--ccceeEe---
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE---AIS--PADAVLL--- 195 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~---~~p--~~D~v~~--- 195 (296)
.++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++ ...++.++.+|... +.+ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 46789999999999999999887764 8999999 999999876 56678888888654 233 3787764
Q ss_pred --hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHH
Q 022515 196 --KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFT 273 (296)
Q Consensus 196 --~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~ 273 (296)
...++++++. ..++++++|+||| ||++++++......... ..++ .-.....+.+...|.
T Consensus 138 ~~~~~~~~~~~~--~~~~~e~~rvLkP---GG~l~f~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~L~ 198 (236)
T 3orh_A 138 PLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYCNLTSWGELMK-------SKYS-------DITIMFEETQVPALL 198 (236)
T ss_dssp CCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEECCHHHHHHHTT-------TTCS-------CHHHHHHHHTHHHHH
T ss_pred ecccchhhhcch--hhhhhhhhheeCC---CCEEEEEecCCchhhhh-------hhhh-------hhhhhhHHHHHHHHH
Confidence 5555655554 4789999999999 88887655322110000 0000 000113456677889
Q ss_pred hcCCceeEE
Q 022515 274 YAGFSDYKI 282 (296)
Q Consensus 274 ~aGf~~~~~ 282 (296)
++||++..+
T Consensus 199 eaGF~~~~i 207 (236)
T 3orh_A 199 EAGFRRENI 207 (236)
T ss_dssp HHTCCGGGE
T ss_pred HcCCeEEEE
Confidence 999997554
No 103
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.48 E-value=9e-14 Score=119.89 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=96.6
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC---CC---CCeeEEeccCCCCCC--
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS---DL---ANLKYVGGDMFEAIS-- 188 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---~~---~ri~~~~~D~~~~~p-- 188 (296)
.++..+. ..++.+|||+|||+|.++..+++. +|..+++++|+ +.+++.+++ .. +++++..+|+.++.+
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 4445555 667889999999999999999998 78899999999 999988775 22 689999999988544
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW 268 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~ 268 (296)
.||+|++ ++++.. .+|+++.++|+| ||++++...... ..+++
T Consensus 179 ~fD~Vi~-----~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~~~~----------------------------~~~~~ 220 (275)
T 1yb2_A 179 MYDAVIA-----DIPDPW--NHVQKIASMMKP---GSVATFYLPNFD----------------------------QSEKT 220 (275)
T ss_dssp CEEEEEE-----CCSCGG--GSHHHHHHTEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred CccEEEE-----cCcCHH--HHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHH
Confidence 4999998 455543 789999999999 899888763110 23466
Q ss_pred HHHHHhcCCceeEEEE
Q 022515 269 TKLFTYAGFSDYKIIP 284 (296)
Q Consensus 269 ~~ll~~aGf~~~~~~~ 284 (296)
.+.++++||+.+++..
T Consensus 221 ~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 221 VLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHSGGGTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 6778888998877665
No 104
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.47 E-value=2.2e-13 Score=113.87 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=101.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC--CC----ccceeEeh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA--IS----PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~--~p----~~D~v~~~ 196 (296)
++++.+|||+|||+|.++..+++. -|.-+++++|+ |.+++.+++ ...++..+.+|...+ .+ .+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 688999999999999999999997 48889999999 999987765 456799999888762 11 37888764
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG 276 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG 276 (296)
. ++.. +...++++++++||| ||+++|.......+...++ ....++-.+.|+++|
T Consensus 155 ~--~~~~--~~~~~l~~~~r~LKp---GG~lvI~ik~r~~d~~~p~-------------------~~~~~~ev~~L~~~G 208 (233)
T 4df3_A 155 V--AQPE--QAAIVVRNARFFLRD---GGYMLMAIKARSIDVTTEP-------------------SEVYKREIKTLMDGG 208 (233)
T ss_dssp C--CCTT--HHHHHHHHHHHHEEE---EEEEEEEEECCHHHHHTCC-------------------CHHHHHHHHHHHHTT
T ss_pred c--cCCh--hHHHHHHHHHHhccC---CCEEEEEEecccCCCCCCh-------------------HHHHHHHHHHHHHCC
Confidence 2 2222 345789999999999 9999987543322111100 001234456789999
Q ss_pred CceeEEEEcCCc---ceEEEEe
Q 022515 277 FSDYKIIPILGL---RSLIEVY 295 (296)
Q Consensus 277 f~~~~~~~~~~~---~~vi~~~ 295 (296)
|+.++...+..+ ..++.++
T Consensus 209 F~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 209 LEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCEEEEEECTTTSTTEEEEEEC
T ss_pred CEEEEEEccCCCCCceEEEEEE
Confidence 999998877543 4455544
No 105
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.46 E-value=6.8e-13 Score=109.80 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=94.0
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhh----ccCCCCCCeeEEeccCCCC-----CC-ccceeEeh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVN----GLDSDLANLKYVGGDMFEA-----IS-PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~~ri~~~~~D~~~~-----~p-~~D~v~~~ 196 (296)
..++.+|||||||+|.++..+++..+..+++++|+ +.+++ .++ ...++.++.+|...+ .+ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~-~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR-ERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH-HCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh-cCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence 45678999999999999999999988779999999 76543 333 345789999998763 22 49999986
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH----HHH
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT----KLF 272 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~----~ll 272 (296)
+.+ .++...++++++++||| ||++++.-...+.+. ..+.+++. +.+
T Consensus 134 -~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~-----------------------~~~~~~~~~~~~~~l 183 (210)
T 1nt2_A 134 -IAQ---KNQIEILKANAEFFLKE---KGEVVIMVKARSIDS-----------------------TAEPEEVFKSVLKEM 183 (210)
T ss_dssp -CCS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHHHCT-----------------------TSCHHHHHHHHHHHH
T ss_pred -ccC---hhHHHHHHHHHHHHhCC---CCEEEEEEecCCccc-----------------------cCCHHHHHHHHHHHH
Confidence 222 23344569999999999 999888732211000 00223321 237
Q ss_pred HhcCCceeEEEEcCC---cceEEEEe
Q 022515 273 TYAGFSDYKIIPILG---LRSLIEVY 295 (296)
Q Consensus 273 ~~aGf~~~~~~~~~~---~~~vi~~~ 295 (296)
+++ |++++...... ...++.++
T Consensus 184 ~~~-f~~~~~~~~~p~~~~h~~~~~~ 208 (210)
T 1nt2_A 184 EGD-FKIVKHGSLMPYHRDHIFIHAY 208 (210)
T ss_dssp HTT-SEEEEEEECTTTCTTEEEEEEE
T ss_pred Hhh-cEEeeeecCCCCCCCcEEEEEE
Confidence 888 99999887732 34566655
No 106
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.46 E-value=1.1e-13 Score=123.70 Aligned_cols=114 Identities=15% Similarity=0.161 Sum_probs=92.0
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------------C-CCCeeEEec
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------------D-LANLKYVGG 181 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~-~~ri~~~~~ 181 (296)
...+++.+. ..++.+|||||||+|..++.++..++..+++++|+ +.+++.|++ . .++|+|+.+
T Consensus 162 i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 162 VAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 345555555 67889999999999999999999887667999999 888776653 1 378999999
Q ss_pred cCCC-CC----CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCC
Q 022515 182 DMFE-AI----SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKK 238 (296)
Q Consensus 182 D~~~-~~----p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~ 238 (296)
|+++ ++ +.+|+|+++.+++ + ++....|+++++.||| ||+|++.|.+.++..
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNF 295 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTC
T ss_pred cccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCC
Confidence 9998 54 3599999987764 3 3445778999999999 999999998887654
No 107
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.46 E-value=2.2e-13 Score=114.42 Aligned_cols=141 Identities=9% Similarity=0.094 Sum_probs=96.5
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC--C----CccceeEeh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA--I----SPADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~--~----p~~D~v~~~ 196 (296)
+.++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+.+ ...+++++.+|+.+. . ..||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5667899999999999999999986 7789999999 775544432 337899999999872 2 249999984
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC-CCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN-KKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA 275 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a 275 (296)
.. ..+....+++++.++|+| ||++++ ...... ....+ . ... -..+ .++|+++
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i-~~~~~~~~~~~~---~-~~~--------------~~~~-~~~l~~~ 207 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVI-SIKANCIDSTAS---A-EAV--------------FASE-VKKMQQE 207 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEE-EEEHHHHCSSSC---H-HHH--------------HHHH-HHTTGGG
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEE-EEcccccccCCC---H-HHH--------------HHHH-HHHHHHC
Confidence 33 233345678999999999 888887 322110 11100 0 000 0123 5889999
Q ss_pred CCceeEEEEcCCc---ceEEEEe
Q 022515 276 GFSDYKIIPILGL---RSLIEVY 295 (296)
Q Consensus 276 Gf~~~~~~~~~~~---~~vi~~~ 295 (296)
||+++++..+..+ ..++.++
T Consensus 208 Gf~~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 208 NMKPQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp TEEEEEEEECTTTSSSEEEEEEE
T ss_pred CCceEEEEecCCccCCcEEEEEE
Confidence 9999987776433 4455443
No 108
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.46 E-value=3.3e-13 Score=118.48 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=82.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------------CCCCeeEEeccCCC-C----C--C
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------------DLANLKYVGGDMFE-A----I--S 188 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~D~~~-~----~--p 188 (296)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ...+++++.+|+.+ + + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 46789999999999999998884 5779999999 899988765 12379999999987 4 3 2
Q ss_pred --ccceeEehhhhccC-C-chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 189 --PADAVLLKWILHDW-N-DEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 189 --~~D~v~~~~vlh~~-~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.||+|++..++|+. . .++...+|++++++|+| ||.+++...
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~ 156 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTP 156 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecC
Confidence 59999999999987 3 35567999999999999 888887765
No 109
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.46 E-value=2.4e-13 Score=115.87 Aligned_cols=108 Identities=13% Similarity=0.070 Sum_probs=83.4
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCC-CeeEEeccCCC----CC-C
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLA-NLKYVGGDMFE----AI-S 188 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~-ri~~~~~D~~~----~~-p 188 (296)
...++..+. ..++.+|||||||+|.++..++++ +.+++++|+ +.|++.+++ ... .+.....++.. .. .
T Consensus 34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~ 109 (261)
T 3iv6_A 34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAG 109 (261)
T ss_dssp HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTT
T ss_pred HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCC
Confidence 345666666 677889999999999999999987 569999999 999998876 222 22222222211 11 2
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.||+|++..++|+++.++...+++++.++| | ||++++...
T Consensus 110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~ 149 (261)
T 3iv6_A 110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK 149 (261)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence 599999999999999888889999999999 9 999988754
No 110
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.46 E-value=4.6e-13 Score=128.29 Aligned_cols=101 Identities=14% Similarity=0.179 Sum_probs=86.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----------CCCCeeEEeccCCC-CCC--ccc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----------DLANLKYVGGDMFE-AIS--PAD 191 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~D~~~-~~p--~~D 191 (296)
..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ ...+++|+.+|+.+ +.+ .||
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 3467899999999999999999988 5679999999 999988864 23579999999988 543 599
Q ss_pred eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+|++..++||++++....+++++++.|+| | .++|...
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTP 835 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTP 835 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEEC
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEec
Confidence 99999999999998888899999999999 6 6666553
No 111
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.46 E-value=4.9e-13 Score=113.75 Aligned_cols=127 Identities=14% Similarity=0.182 Sum_probs=100.5
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC-
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS- 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p- 188 (296)
..++..+. ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.|++ ..+++++..+|+.+.++
T Consensus 83 ~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 83 ALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 34555555 667889999999999999999999 88999999999 899988876 35779999999998554
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 267 (296)
.||+|++ +.++.. .+++++.++|+| ||++++...... ..++
T Consensus 161 ~~~D~v~~-----~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 202 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQPE--RVVEHAAKALKP---GGFFVAYTPCSN----------------------------QVMR 202 (255)
T ss_dssp CSEEEEEE-----CSSCGG--GGHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHH
T ss_pred CCcCEEEE-----CCCCHH--HHHHHHHHHcCC---CCEEEEEECCHH----------------------------HHHH
Confidence 4999998 345543 679999999999 899888753110 3456
Q ss_pred HHHHHHhcC--CceeEEEE
Q 022515 268 WTKLFTYAG--FSDYKIIP 284 (296)
Q Consensus 268 ~~~ll~~aG--f~~~~~~~ 284 (296)
+.++++++| |+.+++..
T Consensus 203 ~~~~l~~~g~~f~~~~~~e 221 (255)
T 3mb5_A 203 LHEKLREFKDYFMKPRTIN 221 (255)
T ss_dssp HHHHHHHTGGGBSCCEEEC
T ss_pred HHHHHHHcCCCccccEEEE
Confidence 778889999 88777653
No 112
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.46 E-value=2.8e-13 Score=118.31 Aligned_cols=152 Identities=11% Similarity=0.129 Sum_probs=99.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCC-------CeeEEeccCCC---------CCC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLA-------NLKYVGGDMFE---------AIS 188 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-------ri~~~~~D~~~---------~~p 188 (296)
++.+|||||||+|..+..++.. ...+++++|+ +.+++.|++ ... +++|...|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4689999999999877766664 3468999999 999999886 111 26788888732 122
Q ss_pred --ccceeEehhhhcc-CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCC---chh---h---hhhhhhhh---
Q 022515 189 --PADAVLLKWILHD-WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDD---KSI---E---TQLFFDML--- 253 (296)
Q Consensus 189 --~~D~v~~~~vlh~-~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~---~~~---~---~~~~~~~~--- 253 (296)
.||+|++..++|+ ++.++...+|++++++|+| ||++++............ .+. . ...+..+.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 5999999999987 4545567999999999999 898877665321100000 000 0 00000000
Q ss_pred -----hhhhcC------ccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 254 -----MMVLLT------GTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 254 -----~~~~~~------g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
.....+ -...+.+++.++++++||+++.....
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 000011 12347899999999999999887654
No 113
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.45 E-value=5e-13 Score=113.88 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=99.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCC--CccceeEehhhhc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAI--SPADAVLLKWILH 200 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~--p~~D~v~~~~vlh 200 (296)
..++.+|||+|||+|.++..+++..+ +++++|+ |.+++.+++ ..-.+++..+|+.+.. ..||+|++....|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 35678999999999999999888755 9999999 999888875 1112899999987743 3599999865443
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
....+++++.+.|+| ||++++.+.... +.+++.++++++||+++
T Consensus 196 -----~~~~~l~~~~~~Lkp---gG~lils~~~~~----------------------------~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 196 -----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEE
T ss_pred -----HHHHHHHHHHHHcCC---CCEEEEEeeccC----------------------------CHHHHHHHHHHCCCEEE
Confidence 346889999999999 898888654321 46788999999999999
Q ss_pred EEEEcCCcceEE
Q 022515 281 KIIPILGLRSLI 292 (296)
Q Consensus 281 ~~~~~~~~~~vi 292 (296)
++....+..+++
T Consensus 240 ~~~~~~~W~~l~ 251 (254)
T 2nxc_A 240 EEAAEGEWVLLA 251 (254)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCeEEEE
Confidence 988877665543
No 114
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.45 E-value=6e-13 Score=109.65 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=94.8
Q ss_pred HHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---CCc
Q 022515 120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---ISP 189 (296)
Q Consensus 120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~p~ 189 (296)
++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.|++ ..++++++.+|+.+. .+.
T Consensus 47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 344444 567789999999999999999988 789999999 999988875 234899999999872 346
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT 269 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~ 269 (296)
||+|++...+ + .. +++++.+.|+| ||++++...... +..++.
T Consensus 123 ~D~v~~~~~~----~--~~-~l~~~~~~Lkp---gG~lv~~~~~~~----------------------------~~~~~~ 164 (204)
T 3njr_A 123 PEAVFIGGGG----S--QA-LYDRLWEWLAP---GTRIVANAVTLE----------------------------SETLLT 164 (204)
T ss_dssp CSEEEECSCC----C--HH-HHHHHHHHSCT---TCEEEEEECSHH----------------------------HHHHHH
T ss_pred CCEEEECCcc----c--HH-HHHHHHHhcCC---CcEEEEEecCcc----------------------------cHHHHH
Confidence 9999987643 1 23 89999999999 898887553110 456777
Q ss_pred HHHHhcCCceeEEE
Q 022515 270 KLFTYAGFSDYKII 283 (296)
Q Consensus 270 ~ll~~aGf~~~~~~ 283 (296)
+++++.|+++.++.
T Consensus 165 ~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 165 QLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHhCCCcEEEEE
Confidence 88999998876654
No 115
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.45 E-value=1.1e-13 Score=118.92 Aligned_cols=97 Identities=15% Similarity=0.271 Sum_probs=81.2
Q ss_pred CCCEEEEecCCchH----HHHHHHHHCC----CCeEEeccc-hhHhhccCCC--------------------------C-
Q 022515 130 GLNSLVDVGGGIGT----AAKAIAKAFP----KLECTCFDL-PHVVNGLDSD--------------------------L- 173 (296)
Q Consensus 130 ~~~~vLDvGgG~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~--------------------------~- 173 (296)
+..+|+|+|||||. +++.|++.+| +.++++.|+ +.+++.|++. .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666777655 468999999 9999888651 1
Q ss_pred ---------CCeeEEeccCCC-CCC---ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 174 ---------ANLKYVGGDMFE-AIS---PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 174 ---------~ri~~~~~D~~~-~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
.+|+|..+|+.+ +++ .||+|+|.+++++++++...+++++++++|+| ||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 369999999998 454 59999999999999988888999999999999 787766
No 116
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=112.38 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=85.6
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--ccceeEehhhhc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PADAVLLKWILH 200 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh 200 (296)
..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ...++++..+|+.+ +.+ .||+|++..++|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 356789999999999999999998654 8999999 899988876 23689999999988 554 499999999887
Q ss_pred cCC-------------chHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 201 DWN-------------DEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 201 ~~~-------------d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
++. .++...+|+++.++|+| ||++++.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~ 161 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSA 161 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCC
Confidence 765 34567899999999999 9999988753
No 117
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.43 E-value=1.9e-13 Score=115.44 Aligned_cols=122 Identities=20% Similarity=0.266 Sum_probs=94.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC-----CccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI-----SPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~-----p~~D~v~~ 195 (296)
+.+..+|||||||+|..+..++...|+.+++++|+ +.+++.+++ ...+++++.+|+.+ +. ..||+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 34678999999999999999999899999999999 889888875 23469999999876 42 24999998
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA 275 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a 275 (296)
..+ .+ ...+++.+.+.|+| ||++++..... . . ...+++.+.++++
T Consensus 148 ~~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~g~~-----~----~-----------------~~~~~~~~~l~~~ 192 (240)
T 1xdz_A 148 RAV----AR--LSVLSELCLPLVKK---NGLFVALKAAS-----A----E-----------------EELNAGKKAITTL 192 (240)
T ss_dssp ECC----SC--HHHHHHHHGGGEEE---EEEEEEEECC------C----H-----------------HHHHHHHHHHHHT
T ss_pred ecc----CC--HHHHHHHHHHhcCC---CCEEEEEeCCC-----c----h-----------------HHHHHHHHHHHHc
Confidence 763 33 45889999999999 89888763210 0 0 0235677889999
Q ss_pred CCceeEEEE
Q 022515 276 GFSDYKIIP 284 (296)
Q Consensus 276 Gf~~~~~~~ 284 (296)
||++.++..
T Consensus 193 g~~~~~~~~ 201 (240)
T 1xdz_A 193 GGELENIHS 201 (240)
T ss_dssp TEEEEEEEE
T ss_pred CCeEeEEEE
Confidence 999887764
No 118
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.43 E-value=1.5e-14 Score=123.13 Aligned_cols=144 Identities=10% Similarity=0.010 Sum_probs=97.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCC----CCCC-----cccee
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMF----EAIS-----PADAV 193 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~----~~~p-----~~D~v 193 (296)
++.+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++ ..++++++.+|.. ++.+ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999988899999999 999988876 3567999999953 2333 49999
Q ss_pred EehhhhccCCc-------------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh-hhhhhcC
Q 022515 194 LLKWILHDWND-------------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM-LMMVLLT 259 (296)
Q Consensus 194 ~~~~vlh~~~d-------------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 259 (296)
++.-..|.... +....++++++++|+| ||++.+++.+.... ...... .+.....
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~~---------~~~l~~~g~~~~~~ 212 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHDS---------LQLKKRLRWYSCML 212 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHHH---------HHHGGGBSCEEEEE
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHHH---------HhcccceEEEEECC
Confidence 99755553331 1123567889999999 99888776433210 001100 0111112
Q ss_pred ccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 260 GTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 260 g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
+...+.+++.++++++||+.+++...
T Consensus 213 ~~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 213 GKKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp SSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred CChhHHHHHHHHHHHcCCCceEEEEE
Confidence 34445689999999999999887765
No 119
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.43 E-value=9e-13 Score=110.29 Aligned_cols=130 Identities=17% Similarity=0.138 Sum_probs=97.0
Q ss_pred cCCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCC--CCCC--ccceeEehh
Q 022515 128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMF--EAIS--PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~--~~~p--~~D~v~~~~ 197 (296)
..++.+|||+||| +|.++..+++.. ..+++++|+ +.+++.|++ ...+++++.+|.. .+.+ .||+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999987 789999999 999988876 2338999999963 3443 599999876
Q ss_pred hhccCCchH-----------------HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCc
Q 022515 198 ILHDWNDEE-----------------CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTG 260 (296)
Q Consensus 198 vlh~~~d~~-----------------~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 260 (296)
..|..++.. ...+++++.+.|+| ||++++.-....
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPDKE------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEESCH-------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEecccH-------------------------
Confidence 665443321 26789999999999 899888632110
Q ss_pred cccCHHHHHHHHHhcCCceeEEEEcCCc
Q 022515 261 TERDEKEWTKLFTYAGFSDYKIIPILGL 288 (296)
Q Consensus 261 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~ 288 (296)
...+++.++++++||++..+....+.
T Consensus 184 --~~~~~~~~~l~~~g~~~~~~~~~~g~ 209 (230)
T 3evz_A 184 --KLLNVIKERGIKLGYSVKDIKFKVGT 209 (230)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEECCCC
T ss_pred --hHHHHHHHHHHHcCCceEEEEecCCC
Confidence 04567889999999987776655443
No 120
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.43 E-value=4.3e-13 Score=117.31 Aligned_cols=130 Identities=12% Similarity=0.119 Sum_probs=96.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCC-C---CC-cccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFE-A---IS-PADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~-~---~p-~~D~v 193 (296)
.++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ . ..|++++.+|..+ . .+ .||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999999 999988875 2 4789999999876 2 12 49999
Q ss_pred EehhhhccCCchHH--HHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHH
Q 022515 194 LLKWILHDWNDEEC--VKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKL 271 (296)
Q Consensus 194 ~~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 271 (296)
++....+.++.... .+++++++++|+| ||.+++.... + +.. .....++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~~--------~------~~~----------~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGES--------I------WLD----------LELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEECC--------T------TTC----------HHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecCC--------c------ccc----------hHHHHHHHHH
Confidence 99777666554432 5889999999999 8888776321 0 000 1145788899
Q ss_pred HHhcCCceeEEEEc
Q 022515 272 FTYAGFSDYKIIPI 285 (296)
Q Consensus 272 l~~aGf~~~~~~~~ 285 (296)
++++||..++++..
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999998887754
No 121
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.43 E-value=1.9e-12 Score=108.11 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=98.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC-----CC-ccceeEeh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA-----IS-PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~-----~p-~~D~v~~~ 196 (296)
+.++.+|||+|||+|.++..+++.. |..+++++|. +.+++.+++ ...+++++.+|+.+. .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999885 6689999999 876665543 347899999999872 22 49999975
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG 276 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG 276 (296)
.. .......+++++++.|+| ||++++. .........++ . .....+++.++ .++
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~--~---------------~~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTKE--P---------------EQVFREVEREL-SEY- 203 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTSC--H---------------HHHHHHHHHHH-HTT-
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCCC--h---------------hhhhHHHHHHH-Hhh-
Confidence 33 222334559999999999 8998887 32221111100 0 01145677777 777
Q ss_pred CceeEEEEcCCc---ceEEEEeC
Q 022515 277 FSDYKIIPILGL---RSLIEVYP 296 (296)
Q Consensus 277 f~~~~~~~~~~~---~~vi~~~~ 296 (296)
|++++...+... ..++.+++
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred ceeeeEeccCcccCCCEEEEEEe
Confidence 999988887544 55665543
No 122
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.43 E-value=1.1e-12 Score=108.81 Aligned_cols=98 Identities=19% Similarity=0.291 Sum_probs=79.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC--ccceeEehhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS--PADAVLLKWI 198 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p--~~D~v~~~~v 198 (296)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+.+ + ++ .||+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467999999999999999999999999999999 999988875 24789999999987 3 43 4999998754
Q ss_pred hccCCch-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 199 LHDWNDE-------ECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 199 lh~~~d~-------~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.+ |+.. ....+++++.++|+| ||.+++..
T Consensus 121 ~~-~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 156 (214)
T 1yzh_A 121 DP-WPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 156 (214)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred CC-ccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence 32 2211 124789999999999 89887753
No 123
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.43 E-value=1.6e-12 Score=111.00 Aligned_cols=125 Identities=9% Similarity=0.066 Sum_probs=96.0
Q ss_pred cC-CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-C--CC--ccceeE
Q 022515 128 FE-GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-A--IS--PADAVL 194 (296)
Q Consensus 128 ~~-~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~--~p--~~D~v~ 194 (296)
.. ++.+|||+|||+|.++..++++.+. +++++|+ +.+++.|++ ..+|++++.+|+.+ . .+ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999998765 9999999 999988876 45689999999988 3 22 499999
Q ss_pred ehhhhccC------------------CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh
Q 022515 195 LKWILHDW------------------NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV 256 (296)
Q Consensus 195 ~~~vlh~~------------------~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (296)
++-..+.. .......+++.+.+.|+| ||+++++. +..
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~---~~~------------------- 179 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVH---RPE------------------- 179 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEE---CTT-------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEE---cHH-------------------
Confidence 95332211 113345799999999999 89888842 110
Q ss_pred hcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 257 LLTGTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 257 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
...++.+.+++.||...++.++
T Consensus 180 -------~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 180 -------RLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -------THHHHHHHHHHTTEEEEEEEEE
T ss_pred -------HHHHHHHHHHHCCCceEEEEEe
Confidence 4567788899999998887765
No 124
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.43 E-value=6e-14 Score=118.17 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=79.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC---CCC--ccceeEe-hh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE---AIS--PADAVLL-KW 197 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~---~~p--~~D~v~~-~~ 197 (296)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.|++ ...+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4567999999999999999966433 48999999 999988876 34789999999876 343 4999998 55
Q ss_pred h--hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 198 I--LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 198 v--lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
. .+++.......++++++++||| ||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence 4 3444444455789999999999 9998887643
No 125
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.42 E-value=8.1e-13 Score=106.86 Aligned_cols=121 Identities=20% Similarity=0.255 Sum_probs=94.4
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC---C
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI---S 188 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~---p 188 (296)
.++..+. ..++.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++..+|+.+.. +
T Consensus 24 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 99 (192)
T 1l3i_A 24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (192)
T ss_dssp HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCC
Confidence 3344444 5677899999999999999999886 79999999 889888875 2368999999987622 4
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW 268 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~ 268 (296)
.||+|++..++|+ ...+++++.+.|+| ||++++..... . +..++
T Consensus 100 ~~D~v~~~~~~~~-----~~~~l~~~~~~l~~---gG~l~~~~~~~----------~------------------~~~~~ 143 (192)
T 1l3i_A 100 DIDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTAILL----------E------------------TKFEA 143 (192)
T ss_dssp CEEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEECBH----------H------------------HHHHH
T ss_pred CCCEEEECCchHH-----HHHHHHHHHHhcCC---CcEEEEEecCc----------c------------------hHHHH
Confidence 6999999887764 35789999999999 88888765311 0 34677
Q ss_pred HHHHHhcCCce
Q 022515 269 TKLFTYAGFSD 279 (296)
Q Consensus 269 ~~ll~~aGf~~ 279 (296)
.+++++.||.+
T Consensus 144 ~~~l~~~g~~~ 154 (192)
T 1l3i_A 144 MECLRDLGFDV 154 (192)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHCCCce
Confidence 88999999953
No 126
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.42 E-value=4.6e-13 Score=115.41 Aligned_cols=96 Identities=10% Similarity=0.171 Sum_probs=80.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCCccceeEehhhhc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AISPADAVLLKWILH 200 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh 200 (296)
..++.+|||||||+|.++..++.+.++.+++++|+ |++++.|++ ..++++|+.+|..+ +...||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 67889999999999988877777778999999999 999999886 23899999999988 4346999998654
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.++ ..++++++++.|+| ||++++.+
T Consensus 198 -~~d--~~~~l~el~r~LkP---GG~Lvv~~ 222 (298)
T 3fpf_A 198 -AEP--KRRVFRNIHRYVDT---ETRIIYRT 222 (298)
T ss_dssp -CSC--HHHHHHHHHHHCCT---TCEEEEEE
T ss_pred -ccC--HHHHHHHHHHHcCC---CcEEEEEc
Confidence 233 35889999999999 99999876
No 127
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.41 E-value=1.2e-12 Score=108.81 Aligned_cols=130 Identities=9% Similarity=0.032 Sum_probs=102.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC---ccceeEehhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS---PADAVLLKWI 198 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p---~~D~v~~~~v 198 (296)
+++.+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++ ..++|++..+|.+++++ .||+|++..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 4567999999999999999999999999999999 999988876 46789999999998554 4999987654
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS 278 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~ 278 (296)
..+-...+|..+.+.|+| +|++++ .... ..+.++++|.+.||.
T Consensus 94 ----Gg~~i~~Il~~~~~~L~~---~~~lVl-q~~~-----------------------------~~~~vr~~L~~~Gf~ 136 (225)
T 3kr9_A 94 ----GGRLIARILEEGLGKLAN---VERLIL-QPNN-----------------------------REDDLRIWLQDHGFQ 136 (225)
T ss_dssp ----CHHHHHHHHHHTGGGCTT---CCEEEE-EESS-----------------------------CHHHHHHHHHHTTEE
T ss_pred ----ChHHHHHHHHHHHHHhCC---CCEEEE-ECCC-----------------------------CHHHHHHHHHHCCCE
Confidence 233456899999999998 777665 3210 456788999999999
Q ss_pred eeEEEEc---CCcceEEEEe
Q 022515 279 DYKIIPI---LGLRSLIEVY 295 (296)
Q Consensus 279 ~~~~~~~---~~~~~vi~~~ 295 (296)
+++-.-+ +-++.+|.+.
T Consensus 137 i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 137 IVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 8876533 3346676654
No 128
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.41 E-value=4.3e-13 Score=108.39 Aligned_cols=134 Identities=13% Similarity=0.166 Sum_probs=92.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C-C-C-ccceeEeh-
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A-I-S-PADAVLLK- 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~-~-p-~~D~v~~~- 196 (296)
+.++.+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ..++++++.+|... + . + .||+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999987 789999999 999998876 23789999977665 1 2 3 49999876
Q ss_pred hhhccC------CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515 197 WILHDW------NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK 270 (296)
Q Consensus 197 ~vlh~~------~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 270 (296)
..+++. ..+....+|+++.+.|+| ||++++......+.... . .....+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~----------------~~~~~~~~~ 154 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHDGGDM----E----------------KDAVLEYVI 154 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC------CH----H----------------HHHHHHHHH
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCCCCHH----H----------------HHHHHHHHH
Confidence 333220 224456889999999999 99998876543221110 0 002345566
Q ss_pred HHHhcCCceeEEEEcC
Q 022515 271 LFTYAGFSDYKIIPIL 286 (296)
Q Consensus 271 ll~~aGf~~~~~~~~~ 286 (296)
.+...+|++.....+.
T Consensus 155 ~l~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 155 GLDQRVFTAMLYQPLN 170 (185)
T ss_dssp HSCTTTEEEEEEEESS
T ss_pred hCCCceEEEEEehhhc
Confidence 6667788888877663
No 129
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.40 E-value=7e-13 Score=108.27 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=97.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-C-CC--ccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-A-IS--PADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~-~p--~~D~v~~ 195 (296)
..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ..++++++.+|+.+ + .. .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999986 6789999999 999998876 24789999999876 2 22 4999998
Q ss_pred hhhhcc-------CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515 196 KWILHD-------WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW 268 (296)
Q Consensus 196 ~~vlh~-------~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~ 268 (296)
...+.. ...+...++++++.+.|+| ||++++........... . .....+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~----~----------------~~~~~~~ 156 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYGGDTGFE----E----------------KEKVLEF 156 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCBTTTBSH----H----------------HHHHHHH
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccCCCCcHH----H----------------HHHHHHH
Confidence 764411 1122445799999999999 89998887543222110 0 0022344
Q ss_pred HHHHHhcCCceeEEEEcC
Q 022515 269 TKLFTYAGFSDYKIIPIL 286 (296)
Q Consensus 269 ~~ll~~aGf~~~~~~~~~ 286 (296)
.+.+...+|++.....+.
T Consensus 157 ~~~l~~~~~~v~~~~~~~ 174 (197)
T 3eey_A 157 LKGVDQKKFIVQRTDFIN 174 (197)
T ss_dssp HTTSCTTTEEEEEEEETT
T ss_pred HHhCCCCcEEEEEEEecc
Confidence 444556778887776653
No 130
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.40 E-value=3.1e-13 Score=114.82 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=95.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC-----CccceeEeh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI-----SPADAVLLK 196 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~-----p~~D~v~~~ 196 (296)
.++.+|||||||+|..++.++..+|+.+++++|+ +.+++.+++ ...+++++.+|+.+ +. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4578999999999999999999999999999999 899988876 34469999999876 32 359999996
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG 276 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG 276 (296)
.+ .+ ...+++.+.+.|+| ||++++....... . ...++...++..|
T Consensus 159 a~----~~--~~~ll~~~~~~Lkp---gG~l~~~~g~~~~--------~------------------e~~~~~~~l~~~G 203 (249)
T 3g89_A 159 AV----AP--LCVLSELLLPFLEV---GGAAVAMKGPRVE--------E------------------ELAPLPPALERLG 203 (249)
T ss_dssp SS----CC--HHHHHHHHGGGEEE---EEEEEEEECSCCH--------H------------------HHTTHHHHHHHHT
T ss_pred Cc----CC--HHHHHHHHHHHcCC---CeEEEEEeCCCcH--------H------------------HHHHHHHHHHHcC
Confidence 54 22 34789999999999 9998876531100 0 2335667788899
Q ss_pred CceeEEEEc
Q 022515 277 FSDYKIIPI 285 (296)
Q Consensus 277 f~~~~~~~~ 285 (296)
|+..++.++
T Consensus 204 ~~~~~~~~~ 212 (249)
T 3g89_A 204 GRLGEVLAL 212 (249)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 998887765
No 131
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.39 E-value=2.2e-12 Score=107.40 Aligned_cols=130 Identities=9% Similarity=-0.042 Sum_probs=102.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC-C--ccceeEehhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI-S--PADAVLLKWI 198 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~-p--~~D~v~~~~v 198 (296)
+++.+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++ ..++|++..+|.++.. + .||+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4668999999999999999999988889999999 999998876 5679999999999843 3 4999987654
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS 278 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~ 278 (296)
. .+-...+|....+.|++ +|++++.- .. ..++++++|.+.||.
T Consensus 100 G----g~lI~~IL~~~~~~l~~---~~~lIlqp-~~-----------------------------~~~~lr~~L~~~Gf~ 142 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQH---VKTLVLQP-NN-----------------------------REDDLRKWLAANDFE 142 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTT---CCEEEEEE-SS-----------------------------CHHHHHHHHHHTTEE
T ss_pred c----hHHHHHHHHHHHHHhCc---CCEEEEEC-CC-----------------------------ChHHHHHHHHHCCCE
Confidence 3 34466899999999998 77665532 10 356889999999999
Q ss_pred eeEEEEc---CCcceEEEEe
Q 022515 279 DYKIIPI---LGLRSLIEVY 295 (296)
Q Consensus 279 ~~~~~~~---~~~~~vi~~~ 295 (296)
+++-.-+ +-++.+|.+.
T Consensus 143 i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 143 IVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 8876544 3356777764
No 132
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.39 E-value=1.1e-12 Score=105.18 Aligned_cols=110 Identities=9% Similarity=0.074 Sum_probs=86.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CC---C--ccceeEehhhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AI---S--PADAVLLKWIL 199 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~---p--~~D~v~~~~vl 199 (296)
..++.+|||||||. +.+|+ +.|++.|++ ...++++..+|+.+ +. + .||+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56789999999996 34899 899998876 44569999999987 44 4 39999999999
Q ss_pred ccC-CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515 200 HDW-NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF 277 (296)
Q Consensus 200 h~~-~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf 277 (296)
|++ ++. .++|++++++||| ||++++.+........ ....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVETAVDN-------------------NSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEESSSCS-------------------SSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEEccccccccc-------------------ccccCCHHHHHHHHHHCCC
Confidence 998 665 4789999999999 9999996654322110 1123488999999999999
No 133
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.39 E-value=2.1e-13 Score=114.07 Aligned_cols=115 Identities=10% Similarity=0.163 Sum_probs=90.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC--CCC---ccceeEehhhhccC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE--AIS---PADAVLLKWILHDW 202 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~--~~p---~~D~v~~~~vlh~~ 202 (296)
.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 46689999999999999999998 679999999 99999887656689999999965 443 49999987
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEE
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKI 282 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 282 (296)
.+ ...+|++++++|+| ||+++.. +...+.+++.++++++||+...+
T Consensus 119 ~~--~~~~l~~~~~~Lkp---gG~l~~~-----------------------------~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 119 RG--PTSVILRLPELAAP---DAHFLYV-----------------------------GPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp SC--CSGGGGGHHHHEEE---EEEEEEE-----------------------------ESSSCCTHHHHHHHHTTCEEEEE
T ss_pred CC--HHHHHHHHHHHcCC---CcEEEEe-----------------------------CCcCCHHHHHHHHHHCCCeEEEE
Confidence 12 23679999999999 8887710 00114557888999999988776
Q ss_pred EEc
Q 022515 283 IPI 285 (296)
Q Consensus 283 ~~~ 285 (296)
...
T Consensus 165 ~~~ 167 (226)
T 3m33_A 165 DHV 167 (226)
T ss_dssp EEE
T ss_pred Eee
Confidence 543
No 134
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.38 E-value=8.3e-13 Score=105.88 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=77.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~v 198 (296)
+.+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++ ...++++ .|... ..+ .||+|++..+
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 35678999999999999999999999999999999 999998876 2235666 66665 333 4999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+|+. ++. ...+.++.++|+| ||.++-.+
T Consensus 125 LHlL-~~~-~~al~~v~~~L~p---ggvfISfp 152 (200)
T 3fzg_A 125 LPVL-KQQ-DVNILDFLQLFHT---QNFVISFP 152 (200)
T ss_dssp HHHH-HHT-TCCHHHHHHTCEE---EEEEEEEE
T ss_pred HHhh-hhh-HHHHHHHHHHhCC---CCEEEEeC
Confidence 9999 332 3556699999999 55554444
No 135
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.38 E-value=2.2e-12 Score=106.92 Aligned_cols=98 Identities=20% Similarity=0.294 Sum_probs=77.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC--ccceeEehhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS--PADAVLLKWI 198 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p--~~D~v~~~~v 198 (296)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+++++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999999 899988765 34679999999887 3 33 4898887543
Q ss_pred hccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 199 LHDWNDEE-------CVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 199 lh~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.. |+... ...+|+++.++|+| ||.+++..
T Consensus 118 ~p-~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 118 DP-WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CC-CcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 22 22110 24789999999999 89888754
No 136
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.38 E-value=9.6e-13 Score=108.23 Aligned_cols=93 Identities=20% Similarity=0.270 Sum_probs=76.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC--CccceeEehhhhcc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI--SPADAVLLKWILHD 201 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~--p~~D~v~~~~vlh~ 201 (296)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ...++++..+|+.+.. ..||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF--- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence 367999999999999999999999999999999 899888765 2345999999998833 35999997542
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.+ ...+++++.+.|+| ||.+++..
T Consensus 142 -~~--~~~~l~~~~~~L~~---gG~l~~~~ 165 (207)
T 1jsx_A 142 -AS--LNDMVSWCHHLPGE---QGRFYALK 165 (207)
T ss_dssp -SS--HHHHHHHHTTSEEE---EEEEEEEE
T ss_pred -CC--HHHHHHHHHHhcCC---CcEEEEEe
Confidence 22 34789999999999 88888763
No 137
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.38 E-value=5.3e-13 Score=118.73 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=90.2
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC-cc
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS-PA 190 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p-~~ 190 (296)
...+++.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ...++++..+|+.+..+ .|
T Consensus 185 ~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~f 262 (343)
T 2pjd_A 185 SQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRF 262 (343)
T ss_dssp HHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCE
T ss_pred HHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCe
Confidence 345566664 33467999999999999999999999999999999 888988876 33446788999987433 59
Q ss_pred ceeEehhhhcc---CCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 191 DAVLLKWILHD---WNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 191 D~v~~~~vlh~---~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
|+|+++.++|+ +..+...+++++++++|+| ||+++++..
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~ 304 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence 99999999986 2455567999999999999 999998764
No 138
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.37 E-value=1.4e-12 Score=117.20 Aligned_cols=108 Identities=15% Similarity=0.249 Sum_probs=87.1
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CC--CCeeEEeccCCCCCC-
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DL--ANLKYVGGDMFEAIS- 188 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--~ri~~~~~D~~~~~p- 188 (296)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .. .+++|..+|++++.+
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 4566665 44558999999999999999999999999999999 899988876 11 268889999998654
Q ss_pred -ccceeEehhhhcc---CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 189 -PADAVLLKWILHD---WNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 189 -~~D~v~~~~vlh~---~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.||+|++.-.+|+ ..+....++++++.+.|+| ||+++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence 5999999888875 3445556899999999999 89988864
No 139
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.37 E-value=1.9e-12 Score=110.03 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=98.6
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC----C--CCCeeEEeccCCC-CCC-
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS----D--LANLKYVGGDMFE-AIS- 188 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~--~~ri~~~~~D~~~-~~p- 188 (296)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ . .+++++..+|+.+ +++
T Consensus 87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 4555555 677889999999999999999998 67899999999 999988875 1 3789999999988 355
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 267 (296)
.||+|++ ++++.. .+|+++.++|+| ||++++.+.... ...+
T Consensus 165 ~~~D~v~~-----~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 206 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEPW--KVLEKAALALKP---DRFLVAYLPNIT----------------------------QVLE 206 (258)
T ss_dssp TCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEESCHH----------------------------HHHH
T ss_pred CCcCEEEE-----CCcCHH--HHHHHHHHhCCC---CCEEEEEeCCHH----------------------------HHHH
Confidence 4999998 345543 679999999999 999998773210 2345
Q ss_pred HHHHHHhcCCceeEEEE
Q 022515 268 WTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~~~ 284 (296)
+.+.++++||+.+++..
T Consensus 207 ~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEE
Confidence 66778888998766544
No 140
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.36 E-value=2.5e-12 Score=103.26 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=93.6
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC--cc
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--PA 190 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--~~ 190 (296)
.++..+. ..++.+|||+|||+|.++..+++ +..+++++|+ +.+++.+++ ..+++++..+|+.++.+ .|
T Consensus 26 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 26 VSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 3444444 55678999999999999999988 7889999999 899988876 23689999999987444 59
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK 270 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 270 (296)
|+|++..+ .....+++++++. | ||++++...... +..++.+
T Consensus 102 D~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~~~~----------------------------~~~~~~~ 142 (183)
T 2yxd_A 102 NKAFIGGT------KNIEKIIEILDKK--K---INHIVANTIVLE----------------------------NAAKIIN 142 (183)
T ss_dssp SEEEECSC------SCHHHHHHHHHHT--T---CCEEEEEESCHH----------------------------HHHHHHH
T ss_pred cEEEECCc------ccHHHHHHHHhhC--C---CCEEEEEecccc----------------------------cHHHHHH
Confidence 99999887 2335788998888 7 899888763110 3456788
Q ss_pred HHHhcCCceeEE
Q 022515 271 LFTYAGFSDYKI 282 (296)
Q Consensus 271 ll~~aGf~~~~~ 282 (296)
.++++||.+..+
T Consensus 143 ~l~~~g~~~~~~ 154 (183)
T 2yxd_A 143 EFESRGYNVDAV 154 (183)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCeEEEE
Confidence 999999876554
No 141
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.36 E-value=9.7e-12 Score=104.04 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=97.5
Q ss_pred HHHHHhccc-ccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhh----ccCCCCCCeeEEeccCCCCC---
Q 022515 118 SVMIHKCKD-VFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVN----GLDSDLANLKYVGGDMFEAI--- 187 (296)
Q Consensus 118 ~~~~~~~~~-~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~----~a~~~~~ri~~~~~D~~~~~--- 187 (296)
..++..++. .+.++.+|||+|||+|..+..+++. .|..+++++|+ +.+++ .++ ...++.++.+|...+.
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~-~r~nv~~i~~Da~~~~~~~ 141 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ-RRPNIFPLLADARFPQSYK 141 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHH-HCTTEEEEECCTTCGGGTT
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCeEEEEcccccchhhh
Confidence 344444431 2567899999999999999999986 46789999999 87643 333 3468999999987621
Q ss_pred ---CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccC
Q 022515 188 ---SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERD 264 (296)
Q Consensus 188 ---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt 264 (296)
..||+|++.... ++ +...+++.+++.||| ||++++.......+...+ .+..
T Consensus 142 ~~~~~~D~I~~d~a~---~~-~~~il~~~~~~~Lkp---GG~lvisik~~~~d~t~~-------------------~~e~ 195 (232)
T 3id6_C 142 SVVENVDVLYVDIAQ---PD-QTDIAIYNAKFFLKV---NGDMLLVIKARSIDVTKD-------------------PKEI 195 (232)
T ss_dssp TTCCCEEEEEECCCC---TT-HHHHHHHHHHHHEEE---EEEEEEEEC-------CC-------------------SSSS
T ss_pred ccccceEEEEecCCC---hh-HHHHHHHHHHHhCCC---CeEEEEEEccCCcccCCC-------------------HHHH
Confidence 259999886432 22 223345566679999 999988742221111110 0001
Q ss_pred HHHHHHHHHhcCCceeEEEEcCCc---ceEEEEe
Q 022515 265 EKEWTKLFTYAGFSDYKIIPILGL---RSLIEVY 295 (296)
Q Consensus 265 ~~e~~~ll~~aGf~~~~~~~~~~~---~~vi~~~ 295 (296)
.++..+.|+++||++.+...+..+ ..++.++
T Consensus 196 ~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 196 YKTEVEKLENSNFETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp TTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEE
Confidence 234456778899999998887433 5555554
No 142
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.35 E-value=2.9e-12 Score=110.42 Aligned_cols=127 Identities=18% Similarity=0.220 Sum_probs=97.7
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC-
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS- 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p- 188 (296)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ ..+++++..+|+.+.++
T Consensus 102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 34555555 667889999999999999999999 68899999999 999988875 23689999999988544
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 267 (296)
.||+|++ +.++. ..+|+++.++|+| ||++++.+.... ...+
T Consensus 180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~----------------------------~~~~ 221 (277)
T 1o54_A 180 KDVDALFL-----DVPDP--WNYIDKCWEALKG---GGRFATVCPTTN----------------------------QVQE 221 (277)
T ss_dssp CSEEEEEE-----CCSCG--GGTHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHH
T ss_pred CccCEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHH
Confidence 4999998 34544 3789999999999 898888763110 2345
Q ss_pred HHHHHHhcCCceeEEEE
Q 022515 268 WTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~~~ 284 (296)
+.+.++++||+.+++..
T Consensus 222 ~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 222 TLKKLQELPFIRIEVWE 238 (277)
T ss_dssp HHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHCCCceeEEEE
Confidence 56677788888766544
No 143
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.34 E-value=6.8e-12 Score=108.27 Aligned_cols=122 Identities=14% Similarity=0.089 Sum_probs=95.0
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~v 198 (296)
..++.+|||+|||+|.++..+++..+. +++++|+ |.+++.|++ ..++++++.+|+.+ ..+ .||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 345789999999999999999999766 8999999 999988875 45679999999998 333 5999988432
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS 278 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~ 278 (296)
. ....+++++.++|+| ||.+++.+........ ....+++.+.++++||+
T Consensus 202 -----~-~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~----------------------~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 202 -----V-RTHEFIPKALSIAKD---GAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYD 250 (278)
T ss_dssp -----S-SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCE
T ss_pred -----h-hHHHHHHHHHHHCCC---CeEEEEEEeecccccc----------------------ccHHHHHHHHHHHcCCe
Confidence 1 224689999999999 8988888765422110 11567888999999998
Q ss_pred eeE
Q 022515 279 DYK 281 (296)
Q Consensus 279 ~~~ 281 (296)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 766
No 144
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.33 E-value=6.8e-12 Score=105.31 Aligned_cols=130 Identities=8% Similarity=0.000 Sum_probs=101.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC-C--ccceeEehhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI-S--PADAVLLKWI 198 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~-p--~~D~v~~~~v 198 (296)
+++.+|||||||+|.+++.+++..|..+++++|+ |.+++.|++ ..++|++..+|.++.+ + .||+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4668999999999999999999988889999999 999988876 4678999999999843 3 3999987654
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS 278 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~ 278 (296)
. .+-...+|....+.|++ ++++++.-. . ..++++++|.+.||.
T Consensus 100 G----g~lI~~IL~~~~~~L~~---~~~lIlq~~-~-----------------------------~~~~lr~~L~~~Gf~ 142 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAG---VTKLILQPN-I-----------------------------AAWQLREWSEQNNWL 142 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTT---CCEEEEEES-S-----------------------------CHHHHHHHHHHHTEE
T ss_pred c----hHHHHHHHHHHHHHhCC---CCEEEEEcC-C-----------------------------ChHHHHHHHHHCCCE
Confidence 3 34456899999999998 677665421 0 356788999999999
Q ss_pred eeEEEEc---CCcceEEEEe
Q 022515 279 DYKIIPI---LGLRSLIEVY 295 (296)
Q Consensus 279 ~~~~~~~---~~~~~vi~~~ 295 (296)
+++-.-+ +-++.+|.+.
T Consensus 143 i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 143 ITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 8664433 3345666654
No 145
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.33 E-value=8.6e-12 Score=106.58 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=78.0
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCCC--------CC-
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFEA--------IS- 188 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~~--------~p- 188 (296)
..+..+|||+|||+|.++..+++++|..+++++|+ +.+++.|++ . .+|++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45667999999999999999999999999999999 899888765 1 23799999999874 22
Q ss_pred -ccceeEehhhh----------------ccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 189 -PADAVLLKWIL----------------HDWNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 189 -~~D~v~~~~vl----------------h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
.||+|+++-.. ++........+++.+.+.|+| ||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence 49999996221 222223356889999999999 8988874
No 146
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.32 E-value=5.2e-12 Score=114.76 Aligned_cols=112 Identities=18% Similarity=0.289 Sum_probs=87.6
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhcc-------CC-----C--CCCeeEEecc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGL-------DS-----D--LANLKYVGGD 182 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~-----~--~~ri~~~~~D 182 (296)
..+++.+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ . .++++++.+|
T Consensus 232 ~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 232 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 34555555 66788999999999999999999888789999999 8887777 43 1 3789999875
Q ss_pred CC-CC------CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515 183 MF-EA------ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237 (296)
Q Consensus 183 ~~-~~------~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~ 237 (296)
.+ .+ ...||+|++.++++ . ++....|+++.+.|+| ||++++.+.+.+..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence 44 32 23599999987773 2 3445789999999999 99999998776654
No 147
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.32 E-value=2.5e-12 Score=119.05 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=87.2
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC-c
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS-P 189 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~ 189 (296)
..+++.+. ..++.+|||||||+|.++..+++ .+..+++++|+.++++.|++ ..++++++.+|+.+ +.+ .
T Consensus 148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 44555554 45678999999999999998877 57789999999448777765 34899999999998 665 5
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
||+|++..++|++.+++....+.++++.|+| ||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 9999998888888888888889999999999 888774
No 148
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.32 E-value=2.8e-12 Score=114.20 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=86.6
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC-c
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS-P 189 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~ 189 (296)
..+++.+. ..++.+|||||||+|.++..+++. +..+++++|+.++++.+++ ..++++++.+|+.+ +.+ .
T Consensus 40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 34555554 456789999999999999988875 5679999999447776654 34789999999988 555 5
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
||+|++..++|++..+.....+.++++.|+| ||.+++.
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 154 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 154 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence 9999999999988877777889999999999 8887744
No 149
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.30 E-value=2.6e-12 Score=106.87 Aligned_cols=98 Identities=20% Similarity=0.267 Sum_probs=77.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC----CC--ccceeEehh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA----IS--PADAVLLKW 197 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~----~p--~~D~v~~~~ 197 (296)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+++++.+|..+. ++ .+|.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999999999999999999999999999999 899888765 346799999997662 33 489998864
Q ss_pred hhccCCchHH-------HHHHHHHHHhcccCCCCcEEEEEe
Q 022515 198 ILHDWNDEEC-------VKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 198 vlh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
... |+.... ..+++.++++|+| ||.+++..
T Consensus 114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 114 PDP-WHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp CCC-CCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCC-ccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 432 232211 2489999999999 88887765
No 150
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.30 E-value=4e-12 Score=108.51 Aligned_cols=96 Identities=15% Similarity=0.173 Sum_probs=78.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND 204 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d 204 (296)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ... .++.+|+.+ +.+ .||+|++..+++++.+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~--~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK--NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS--CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC--CEEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence 6689999999999999999887 569999999 999998876 222 388899987 554 4999999886666643
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
+ ...+|++++++|+| ||++++....
T Consensus 130 ~-~~~~l~~~~~~Lkp---gG~l~~~~~~ 154 (260)
T 2avn_A 130 N-KDKAFSEIRRVLVP---DGLLIATVDN 154 (260)
T ss_dssp C-HHHHHHHHHHHEEE---EEEEEEEEEB
T ss_pred c-HHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 3 56899999999999 8988887653
No 151
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.29 E-value=8.9e-12 Score=102.69 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=82.2
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---C
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---S 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---p 188 (296)
..+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ...++++..+|..+.. .
T Consensus 67 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 142 (210)
T 3lbf_A 67 ARMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARA 142 (210)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCC
Confidence 34455555 567889999999999999999998 679999999 999988876 2458999999998832 2
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.||+|++..++|++++ ++.+.|+| ||++++.-.
T Consensus 143 ~~D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 175 (210)
T 3lbf_A 143 PFDAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVG 175 (210)
T ss_dssp CEEEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEEC
T ss_pred CccEEEEccchhhhhH--------HHHHhccc---CcEEEEEEc
Confidence 5999999999998886 47788999 898888654
No 152
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.29 E-value=7.8e-12 Score=103.43 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=82.5
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC---
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--- 188 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--- 188 (296)
.+++.+. ..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ...++++..+|+....+
T Consensus 68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 4444444 5677899999999999999999987 6689999999 899988875 33679999999876433
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.||+|++..++|++++ ++.+.|+| ||++++...
T Consensus 146 ~fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred CeeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence 4999999999998773 67889999 898888753
No 153
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.29 E-value=7.3e-12 Score=104.26 Aligned_cols=100 Identities=12% Similarity=0.134 Sum_probs=80.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C-----Cccc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I-----SPAD 191 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~-----p~~D 191 (296)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ ..++++++.+|..+. . ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 45678999999999999999999998 789999999 999988765 456899999998762 1 3499
Q ss_pred eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
+|++... ......+++++.+.|+| ||.+++.+...+
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSGG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9998543 33456889999999999 887777665443
No 154
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.29 E-value=3.9e-12 Score=106.78 Aligned_cols=99 Identities=12% Similarity=0.260 Sum_probs=80.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC-----CccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI-----SPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~-----p~~D~v~~ 195 (296)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+.+.. ..||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 45678999999999999999999889999999999 999988876 3469999999998732 35999997
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
... ......+++++.+.|+| ||.+++-+..+
T Consensus 149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~ 179 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLY 179 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTG
T ss_pred cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCc
Confidence 532 33355789999999999 88876655443
No 155
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.29 E-value=4.4e-12 Score=107.64 Aligned_cols=100 Identities=10% Similarity=0.138 Sum_probs=81.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C---Ccccee
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I---SPADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~---p~~D~v 193 (296)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++ ..++|+++.+|..+ + . ..||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45678999999999999999999998 889999999 999988876 35689999999866 1 2 159999
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
++.. +......+|+++.+.|+| ||.|++.+....
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVRD 174 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence 9854 344456789999999999 888777665443
No 156
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.28 E-value=9.5e-12 Score=107.26 Aligned_cols=142 Identities=10% Similarity=0.024 Sum_probs=95.5
Q ss_pred HHHHhcccccC-CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEE-eccCCC----CCC--c
Q 022515 119 VMIHKCKDVFE-GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYV-GGDMFE----AIS--P 189 (296)
Q Consensus 119 ~~~~~~~~~~~-~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~-~~D~~~----~~p--~ 189 (296)
.+++.+. .. .+.+|||||||||.++..+++. +..+++++|+ +.|++.+.+...|+... ..|+.. .+| .
T Consensus 75 ~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 75 KALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 4455554 33 4579999999999999988886 4568999999 88988743244555433 234332 133 3
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCcc-------c
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGT-------E 262 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~ 262 (296)
||++++..++|++ ..+|++++++|+| ||+++++- -|..... . ...+ .+|. .
T Consensus 152 fD~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~lv--kPqfe~~----~--~~~~------~~G~vrd~~~~~ 209 (291)
T 3hp7_A 152 PSFASIDVSFISL-----NLILPALAKILVD---GGQVVALV--KPQFEAG----R--EQIG------KNGIVRESSIHE 209 (291)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CGGGTSC----G--GGCC-------CCCCCCHHHHH
T ss_pred CCEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEEE--CcccccC----h--hhcC------CCCccCCHHHHH
Confidence 8999998887754 3689999999999 99998862 1111111 0 0000 0121 2
Q ss_pred cCHHHHHHHHHhcCCceeEEEEc
Q 022515 263 RDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 263 rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
++.+++.++++++||++..+...
T Consensus 210 ~~~~~v~~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 210 KVLETVTAFAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEEEC
Confidence 36789999999999998887764
No 157
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.28 E-value=1.3e-11 Score=104.43 Aligned_cols=101 Identities=14% Similarity=0.207 Sum_probs=81.6
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C------Ccc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I------SPA 190 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~------p~~ 190 (296)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++ ..++|+++.+|..+ + . ..|
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 34568999999999999999999886 789999999 899988876 35799999999876 2 2 359
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
|+|++... ......+++++.+.|+| ||.+++.+..+..
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~g 175 (242)
T 3r3h_A 138 DFIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSSS
T ss_pred eEEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccCC
Confidence 99998543 33456789999999999 8887776665543
No 158
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.27 E-value=6.9e-12 Score=106.39 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=81.2
Q ss_pred CCCEEEEecCCchHHHHHHHHH--CCCCeEEeccc-hhHhhccCC---CC------CC----------------------
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKA--FPKLECTCFDL-PHVVNGLDS---DL------AN---------------------- 175 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---~~------~r---------------------- 175 (296)
+..+|||+|||+|.++..+++. +|..+++++|+ +.+++.|++ .. ++
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999998 78889999999 999988875 22 12
Q ss_pred ---ee-------------EEeccCCCCC-------C-ccceeEehhhhccCCc-------hHHHHHHHHHHHhcccCCCC
Q 022515 176 ---LK-------------YVGGDMFEAI-------S-PADAVLLKWILHDWND-------EECVKILKKCKEAITSDGKK 224 (296)
Q Consensus 176 ---i~-------------~~~~D~~~~~-------p-~~D~v~~~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~g 224 (296)
++ +..+|+++.. + .||+|++...++...+ +....+++++.++|+| |
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence 77 9999998843 3 5999999876655443 5566899999999999 9
Q ss_pred cEEEEEee
Q 022515 225 GKVIIIDM 232 (296)
Q Consensus 225 G~lli~e~ 232 (296)
|+++++..
T Consensus 208 G~l~~~~~ 215 (250)
T 1o9g_A 208 AVIAVTDR 215 (250)
T ss_dssp CEEEEEES
T ss_pred cEEEEeCc
Confidence 99998543
No 159
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.27 E-value=3.3e-12 Score=106.34 Aligned_cols=100 Identities=13% Similarity=0.190 Sum_probs=79.5
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC---CC------Ccc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE---AI------SPA 190 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~---~~------p~~ 190 (296)
..++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.|++ ..++++++.+|..+ .. ..|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34678999999999999999999865 889999999 999988876 45689999999754 22 259
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
|+|++....|++.+ ..++++.+ +.|+| ||.+++.+..
T Consensus 136 D~V~~d~~~~~~~~--~~~~~~~~-~~Lkp---gG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYLP--DTLLLEKC-GLLRK---GTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHHH--HHHHHHHT-TCCCT---TCEEEESCCC
T ss_pred EEEEEcCCcccchH--HHHHHHhc-cccCC---CeEEEEeCCC
Confidence 99999887776543 23677777 99999 8887765544
No 160
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.27 E-value=1.6e-11 Score=103.40 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=78.4
Q ss_pred CCCEEEEecCCchHHHHHHHHH----CCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC--C---C--ccceeEehh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKA----FPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA--I---S--PADAVLLKW 197 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~--~---p--~~D~v~~~~ 197 (296)
++.+|||||||+|..+..+++. +|+.+++++|+ +.+++.|+...++|+++.+|..+. + . .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4579999999999999999997 78899999999 899988875457899999999872 1 2 499998865
Q ss_pred hhccCCchHHHHHHHHHHH-hcccCCCCcEEEEEee
Q 022515 198 ILHDWNDEECVKILKKCKE-AITSDGKKGKVIIIDM 232 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~-aL~p~~~gG~lli~e~ 232 (296)
. |. +...+|+++.+ .|+| ||++++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence 4 42 34578999997 9999 898888764
No 161
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.26 E-value=4e-11 Score=107.78 Aligned_cols=97 Identities=5% Similarity=-0.016 Sum_probs=80.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC-----ccceeEehhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS-----PADAVLLKWI 198 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p-----~~D~v~~~~v 198 (296)
++.+|||+| |+|.++..+++..|..+++++|+ |.+++.|++ ..++++++.+|+.+.+| .||+|++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 468999999 99999999999988889999999 999998876 22389999999988432 4999999876
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
+|.. ....+++++.++|+| ||++++++..
T Consensus 251 ~~~~---~~~~~l~~~~~~Lkp---gG~~~~~~~~ 279 (373)
T 2qm3_A 251 ETLE---AIRAFVGRGIATLKG---PRCAGYFGIT 279 (373)
T ss_dssp SSHH---HHHHHHHHHHHTBCS---TTCEEEEEEC
T ss_pred CchH---HHHHHHHHHHHHccc---CCeEEEEEEe
Confidence 6543 246899999999999 9987777654
No 162
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.26 E-value=1.9e-11 Score=99.16 Aligned_cols=100 Identities=12% Similarity=0.039 Sum_probs=80.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--C--CccceeEehh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--I--SPADAVLLKW 197 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~--p~~D~v~~~~ 197 (296)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++++++.+|+.+ . . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35679999999999999987774 5568999999 999998876 23689999999887 2 2 3599999987
Q ss_pred hhccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 022515 198 ILHDWNDEECVKILKKCKE--AITSDGKKGKVIIIDMI 233 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~e~~ 233 (296)
.+|+ ..++..++++.+.+ .|+| ||.+++....
T Consensus 122 p~~~-~~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~ 155 (189)
T 3p9n_A 122 PYNV-DSADVDAILAALGTNGWTRE---GTVAVVERAT 155 (189)
T ss_dssp CTTS-CHHHHHHHHHHHHHSSSCCT---TCEEEEEEET
T ss_pred CCCc-chhhHHHHHHHHHhcCccCC---CeEEEEEecC
Confidence 7654 33556789999999 9999 8888776543
No 163
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.26 E-value=6.3e-12 Score=105.41 Aligned_cols=133 Identities=14% Similarity=0.069 Sum_probs=100.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCC-CC-ccceeEehhhhcc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEA-IS-PADAVLLKWILHD 201 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~-~p-~~D~v~~~~vlh~ 201 (296)
..+.+|||||||.|-++..+...+|..+++++|+ +.+++.+++ ...+.++...|+... .+ .||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 999998876 466689999999984 33 5999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK 281 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 281 (296)
.++++....+ ++.++|+| +|.++-++.-.=..... .++- .-...|++.+.+.|+...+
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~vvVSfp~ksl~Grs~--------gm~~----------~Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PNIVVTFPTKSLGQRSK--------GMFQ----------NYSQSFESQARERSCRIQR 268 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SEEEEEEECC---------------CHHH----------HHHHHHHHHHHHHTCCEEE
T ss_pred hhhhhhHHHH-HHHHHhCC---CCEEEeccchhhcCCCc--------chhh----------HHHHHHHHHHHhcCCceee
Confidence 9988766667 89999999 55555555411111110 1111 1346889999999996555
Q ss_pred EE
Q 022515 282 II 283 (296)
Q Consensus 282 ~~ 283 (296)
+.
T Consensus 269 ~~ 270 (281)
T 3lcv_B 269 LE 270 (281)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 164
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.25 E-value=1.4e-11 Score=103.34 Aligned_cols=99 Identities=11% Similarity=0.218 Sum_probs=81.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C---CccceeE
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I---SPADAVL 194 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~---p~~D~v~ 194 (296)
..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+.+. . ..||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 44678999999999999999999999999999999 899988875 236899999999872 2 2599999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
+....+ ....+|+++.+.|+| ||++++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCCc
Confidence 977654 345789999999999 88888765433
No 165
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.25 E-value=9.8e-12 Score=108.39 Aligned_cols=98 Identities=15% Similarity=0.240 Sum_probs=78.9
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CCC--ccceeEehhhhc
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AIS--PADAVLLKWILH 200 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~p--~~D~v~~~~vlh 200 (296)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ...|++++.+|..+ ..+ .||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999999999999999999 999999887 25799999999876 232 599999865544
Q ss_pred cCCchH--HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 201 DWNDEE--CVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 201 ~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
...... ..+++++++++|+| ||.+++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAP---GGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence 332222 15789999999999 777766543
No 166
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.25 E-value=1.7e-11 Score=106.09 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=76.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC-cc---ceeEeh--
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS-PA---DAVLLK-- 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p-~~---D~v~~~-- 196 (296)
+..+|||+|||+|.++..+++. |+.+++++|+ +.+++.|++ ..+|++|+.+|+++..+ .| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 5579999999999999999999 9999999999 999988876 34579999999998543 58 999996
Q ss_pred ----------hhhccCCch------HHHHHHHHHH-HhcccCCCCcEEEE
Q 022515 197 ----------WILHDWNDE------ECVKILKKCK-EAITSDGKKGKVII 229 (296)
Q Consensus 197 ----------~vlh~~~d~------~~~~iL~~~~-~aL~p~~~gG~lli 229 (296)
.+. +.|.. +-..+++++. +.++| ||.+++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 233 22221 1237899999 99999 888775
No 167
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.24 E-value=8.6e-12 Score=103.90 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=81.0
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C------Ccc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I------SPA 190 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~------p~~ 190 (296)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ ..++++++.+|..+. . ..|
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 34667999999999999999999988 789999999 899988876 357899999998652 1 459
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
|+|++.. +......+++++.+.|+| ||.+++.+...+
T Consensus 142 D~v~~~~-----~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 178 (225)
T 3tr6_A 142 DLIYIDA-----DKANTDLYYEESLKLLRE---GGLIAVDNVLRR 178 (225)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred cEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9999643 334456789999999999 888887766543
No 168
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.24 E-value=3.3e-12 Score=107.26 Aligned_cols=147 Identities=10% Similarity=-0.015 Sum_probs=86.2
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCe--------eEEe-ccCCCCCC
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANL--------KYVG-GDMFEAIS 188 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri--------~~~~-~D~~~~~p 188 (296)
.+++.+.. ...+.+|||||||+|.++..+++. ...+++++|+ +.+++.+++...++ .+.. .|+..+.
T Consensus 27 ~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 103 (232)
T 3opn_A 27 KALKEFHL-EINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR- 103 (232)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC-
T ss_pred HHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC-
Confidence 34444441 234569999999999999999987 3349999999 89988765433333 2222 2222211
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh-hcCccccCHHH
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV-LLTGTERDEKE 267 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~rt~~e 267 (296)
+|.+.+..++..+ ..+|++++++|+| ||++++.. .+. +........-.-.. .......+.++
T Consensus 104 -~d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~~ 166 (232)
T 3opn_A 104 -PSFTSIDVSFISL-----DLILPPLYEILEK---NGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIEK 166 (232)
T ss_dssp -CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHHH
T ss_pred -CCEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHHH
Confidence 2333332222222 3689999999999 99988853 110 00000000000000 00011237889
Q ss_pred HHHHHHhcCCceeEEEEc
Q 022515 268 WTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~~~~ 285 (296)
+.++++++||++..+...
T Consensus 167 l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 167 VLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHHHHTEEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEEc
Confidence 999999999999887654
No 169
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.24 E-value=3.7e-11 Score=100.14 Aligned_cols=95 Identities=8% Similarity=0.153 Sum_probs=76.2
Q ss_pred CEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CC-CCeeEEeccCCC---CC--CccceeEehh
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DL-ANLKYVGGDMFE---AI--SPADAVLLKW 197 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~D~~~---~~--p~~D~v~~~~ 197 (296)
.+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++ .. ++++++.+|..+ .. ..||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4999999999999999999875 789999999 999988876 33 689999999876 23 2599999854
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
. ......+++++.+.|+| ||.+++.+..+
T Consensus 138 ~-----~~~~~~~l~~~~~~Lkp---GG~lv~dn~~~ 166 (221)
T 3dr5_A 138 S-----PMDLKALVDAAWPLLRR---GGALVLADALL 166 (221)
T ss_dssp C-----TTTHHHHHHHHHHHEEE---EEEEEETTTTG
T ss_pred c-----HHHHHHHHHHHHHHcCC---CcEEEEeCCCC
Confidence 2 23345789999999999 77777655444
No 170
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.23 E-value=2.5e-11 Score=101.49 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=81.1
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCCCC---cc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEAIS---PA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~~p---~~ 190 (296)
..+++.+. ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ...+++++.+|+.+..+ .|
T Consensus 60 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 34455554 5677899999999999999999985 79999999 999988876 22289999999987332 49
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
|+|++..++|++++ ++.+.|+| ||++++...
T Consensus 136 D~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~ 166 (231)
T 1vbf_A 136 DRVVVWATAPTLLC--------KPYEQLKE---GGIMILPIG 166 (231)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred cEEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEc
Confidence 99999999998874 47788999 899888764
No 171
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.23 E-value=1.8e-11 Score=102.85 Aligned_cols=101 Identities=19% Similarity=0.253 Sum_probs=81.0
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC---
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--- 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--- 188 (296)
..+++.+. ..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ...++++..+|+..+++
T Consensus 81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 34444444 56778999999999999999999987 89999999 899988875 23569999999855443
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+||+|++..+++++++ ++.+.|+| ||++++...
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence 3999999999988764 57788999 888887653
No 172
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.22 E-value=2.6e-11 Score=109.06 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=82.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhhcc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWILHD 201 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~ 201 (296)
++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ ..+ .||+|++...+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999987 569999999 899988876 33359999999998 343 5999999988887
Q ss_pred ---CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 202 ---WNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 202 ---~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
...+....+++++.+.|+| ||+++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 3456667899999999999 89888864
No 173
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.22 E-value=1.5e-11 Score=109.58 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=77.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~v 198 (296)
..++.+|||||||+|.++..+++. +..+++++|+.++++.|++ ..++++++.+|+.+ +.| .||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 446689999999999999999987 5679999999558877765 46779999999998 665 4999999776
Q ss_pred hccCC-chHHHHHHHHHHHhcccCCCCcEEE
Q 022515 199 LHDWN-DEECVKILKKCKEAITSDGKKGKVI 228 (296)
Q Consensus 199 lh~~~-d~~~~~iL~~~~~aL~p~~~gG~ll 228 (296)
.|.+. .+....+++.+.+.|+| ||.++
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li 170 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAP---DGLIF 170 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred cccccCchhHHHHHHHHHHhCCC---CCEEc
Confidence 55442 22345789999999999 88776
No 174
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.22 E-value=5.3e-11 Score=94.66 Aligned_cols=97 Identities=14% Similarity=0.255 Sum_probs=78.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCCCCCCeeEEeccCCC-C--------CC--ccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE-A--------IS--PADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~-~--------~p--~~D~v~~ 195 (296)
..+..+|||+|||+|.++..+++.+ |+.+++++|+.++++ ..++++..+|+.+ + .+ .||+|++
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~ 94 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc-----cCcEEEEEcccccchhhhhhhccCCCCceeEEEE
Confidence 3566799999999999999999985 778999999933543 2679999999988 4 44 4999999
Q ss_pred hhhhccCCchH---------HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 196 KWILHDWNDEE---------CVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 196 ~~vlh~~~d~~---------~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
..++|...... ...+++++.+.|+| ||++++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~ 137 (180)
T 1ej0_A 95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVF 137 (180)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CCCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEe
Confidence 98888765431 15789999999999 898887664
No 175
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.22 E-value=5.6e-11 Score=102.67 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=73.4
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc--hhHhhccCC-C----------C----CCeeEEeccCCCC---C
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL--PHVVNGLDS-D----------L----ANLKYVGGDMFEA---I 187 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~-~----------~----~ri~~~~~D~~~~---~ 187 (296)
..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . . +++++...|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456799999999999999888763 348999998 577766543 1 1 4788886654431 1
Q ss_pred ------CccceeEehhhhccCCchHHHHHHHHHHHhcc---cCCCCcEEEEE
Q 022515 188 ------SPADAVLLKWILHDWNDEECVKILKKCKEAIT---SDGKKGKVIII 230 (296)
Q Consensus 188 ------p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~---p~~~gG~lli~ 230 (296)
..||+|++..++|+.++ ...+++.+.++|+ | ++||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence 35999999999987554 4588999999999 6 236877664
No 176
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.21 E-value=2.5e-11 Score=102.07 Aligned_cols=99 Identities=12% Similarity=0.208 Sum_probs=74.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------CCCCeeEEeccCCC--C--CC--cc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------DLANLKYVGGDMFE--A--IS--PA 190 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~D~~~--~--~p--~~ 190 (296)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+++++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567899999999999999999999999999999 888876542 24689999999986 2 33 48
Q ss_pred ceeEehhhhccCCch---H----HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 191 DAVLLKWILHDWNDE---E----CVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 191 D~v~~~~vlh~~~d~---~----~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
|.|++...-. |... . ...+|+++.++|+| ||.+++..
T Consensus 125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC------------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 9988643221 1110 0 13689999999999 88888764
No 177
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.21 E-value=3.6e-11 Score=105.71 Aligned_cols=102 Identities=16% Similarity=0.286 Sum_probs=82.9
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI--- 187 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~--- 187 (296)
..+++.+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.|++ ...+++++.+|+.+..
T Consensus 65 ~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~ 142 (317)
T 1dl5_A 65 ALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (317)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC
Confidence 34455555 56778999999999999999999887 478999999 999988875 2356999999998732
Q ss_pred CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 188 SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 188 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
..||+|++..++|+++ +++.+.|+| ||++++...
T Consensus 143 ~~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~ 176 (317)
T 1dl5_A 143 SPYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN 176 (317)
T ss_dssp CCEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred CCeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence 2599999999999877 357788999 899888753
No 178
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.20 E-value=5.8e-11 Score=102.22 Aligned_cols=103 Identities=14% Similarity=0.228 Sum_probs=83.0
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC----C----CCCeeEEeccCCC-C
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS----D----LANLKYVGGDMFE-A 186 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~----~~ri~~~~~D~~~-~ 186 (296)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ . .++++++.+|+.+ +
T Consensus 89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 34555555 667889999999999999999996 57889999999 999888775 2 3689999999987 4
Q ss_pred CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 187 IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 187 ~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.+ .||+|++ +.++.. .+|+++.++|+| ||++++...
T Consensus 167 ~~~~~~D~v~~-----~~~~~~--~~l~~~~~~L~p---gG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVA---GGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEES
T ss_pred CCCCceeEEEE-----CCcCHH--HHHHHHHHhCCC---CCEEEEEeC
Confidence 43 4999998 334433 679999999999 899988764
No 179
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.20 E-value=2.6e-11 Score=109.05 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=81.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWIL 199 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vl 199 (296)
..++.+|||||||+|.++..++++. ..+++++|+..+++.|++ ..++++++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999873 349999999777777765 45789999999988 555 59999997766
Q ss_pred ccCCch-HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 200 HDWNDE-ECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 200 h~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
|....+ ....+++++.+.|+| ||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence 665433 345789999999999 8887765543
No 180
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.19 E-value=2.5e-11 Score=105.46 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=75.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------CCCCeeEEeccCCCC--C--Ccccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------DLANLKYVGGDMFEA--I--SPADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~D~~~~--~--p~~D~v 193 (296)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ ...|++++.+|..+. . ..||+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4568999999999999999999877889999999 999998876 145999999998872 2 249999
Q ss_pred EehhhhccCCchHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 022515 194 LLKWILHDWNDEEC--VKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 194 ~~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
++...-+.-+.... .++++.++++|+| ||.+++..
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~Lkp---gG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCC---CCEEEEec
Confidence 99554433233222 5799999999999 77776654
No 181
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.19 E-value=2.4e-11 Score=102.90 Aligned_cols=95 Identities=17% Similarity=0.312 Sum_probs=74.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------------CCCCeeEEeccCCCC----CC-
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------------DLANLKYVGGDMFEA----IS- 188 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~ri~~~~~D~~~~----~p- 188 (296)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|+.+. ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34667999999999999999999999999999999 888877643 125799999998862 22
Q ss_pred -ccceeEehhhhccCCchHH-----------HHHHHHHHHhcccCCCCcEEEEE
Q 022515 189 -PADAVLLKWILHDWNDEEC-----------VKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~-----------~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
.+|.|++ +++++.. ..+++++.++|+| ||.+++.
T Consensus 127 ~~~d~v~~-----~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFF-----CFPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp TCEEEEEE-----ESCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred cccCEEEE-----ECCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 3677664 2344321 3789999999999 8888884
No 182
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.18 E-value=1.2e-10 Score=95.07 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=76.2
Q ss_pred HHHhcccccCCCCEEEEecCCchHHHHHHHHHCC--CCeEEeccchhHhhccCCCCCCeeEEeccCCC-C----------
Q 022515 120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP--KLECTCFDLPHVVNGLDSDLANLKYVGGDMFE-A---------- 186 (296)
Q Consensus 120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~-~---------- 186 (296)
+.+.+. .+.++.+|||||||+|.++..+++++| +.+++++|+.++. ...+++++.+|+.+ +
T Consensus 13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----PIPNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----CCTTCEEEECCTTTTSSCCC------
T ss_pred HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----CCCCceEEEccccchhhhhhcccccc
Confidence 344443 135678999999999999999999998 6899999994321 24578999999987 4
Q ss_pred ---------------CC--ccceeEehhhhccCC----chH-----HHHHHHHHHHhcccCCCCcEEEEE
Q 022515 187 ---------------IS--PADAVLLKWILHDWN----DEE-----CVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 187 ---------------~p--~~D~v~~~~vlh~~~----d~~-----~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
++ .||+|++...+|... +.. ...+|+++.++|+| ||++++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~ 153 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVK 153 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 33 499999987776532 111 12489999999999 8887763
No 183
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.18 E-value=7.8e-11 Score=104.52 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=79.1
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC--c
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS--P 189 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~ 189 (296)
.+.+... ..++.+|||||||+|.++..+++. +..+++++|+.++++.|++ ..++++++.+|+.+ +.+ .
T Consensus 55 ~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (340)
T 2fyt_A 55 FIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK 131 (340)
T ss_dssp HHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred HHHhhhh--hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc
Confidence 3444333 556789999999999999998887 4568999999448887765 34899999999988 555 4
Q ss_pred cceeEehhhhccCC-chHHHHHHHHHHHhcccCCCCcEEE
Q 022515 190 ADAVLLKWILHDWN-DEECVKILKKCKEAITSDGKKGKVI 228 (296)
Q Consensus 190 ~D~v~~~~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~ll 228 (296)
||+|++..+.+.+. ......+|+++.+.|+| ||+++
T Consensus 132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred EEEEEEcCchhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 99999876433322 22345789999999999 88876
No 184
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.18 E-value=9.5e-11 Score=102.86 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=79.0
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C-CC-ccceeEeh-
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A-IS-PADAVLLK- 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~-~p-~~D~v~~~- 196 (296)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ...+++++.+|+.+ + .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56778999999999999999999875 479999999 888888765 34579999999987 3 23 59999983
Q ss_pred -----hhhccCC-------chH-------HHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 197 -----WILHDWN-------DEE-------CVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 197 -----~vlh~~~-------d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
.+++..+ .++ ..++|+++.+.|+| ||++++....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs 248 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCS 248 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCC
Confidence 2343322 221 15899999999999 8888876643
No 185
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.17 E-value=2.1e-11 Score=96.82 Aligned_cols=94 Identities=10% Similarity=0.010 Sum_probs=72.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC-------ccceeEehh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS-------PADAVLLKW 197 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p-------~~D~v~~~~ 197 (296)
++.+|||+|||+|.++..+++..+. ++++|+ +.+++.+++ ...+++++.+|+.+..+ .||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999998664 999999 999988876 11189999999876211 599999987
Q ss_pred hhccCCchHHHHHHHHHH--HhcccCCCCcEEEEEee
Q 022515 198 ILHDWNDEECVKILKKCK--EAITSDGKKGKVIIIDM 232 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~--~aL~p~~~gG~lli~e~ 232 (296)
.+| ...+ .+++.+. +.|+| ||.+++...
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~ 148 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHP 148 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEE
T ss_pred CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeC
Confidence 776 2222 3455555 99999 888776554
No 186
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.17 E-value=3.4e-11 Score=103.10 Aligned_cols=93 Identities=16% Similarity=0.249 Sum_probs=78.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND 204 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d 204 (296)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++...++.+..+|+.+ +.+ .||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4678999999999999999999988899999999 99999887645678999999887 544 49999986542
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
..++++.++|+| ||++++....
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~~~~ 180 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITATPG 180 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEEEEC
T ss_pred ----hhHHHHHHhcCC---CcEEEEEEcC
Confidence 248899999999 9999988754
No 187
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.17 E-value=1.7e-11 Score=108.62 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=79.8
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC--C--------------CCCeeEEe
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS--D--------------LANLKYVG 180 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--~--------------~~ri~~~~ 180 (296)
.++..+. ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.|++ . .+++++..
T Consensus 96 ~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 96 MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 3455555 667889999999999999999998 57789999999 899888775 1 36899999
Q ss_pred ccCCCC---CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 181 GDMFEA---IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 181 ~D~~~~---~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+|+.+. ++ .||+|++.. ++.. .+++++.++|+| ||++++...
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~~--~~l~~~~~~Lkp---gG~lv~~~~ 220 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDM-----LNPH--VTLPVFYPHLKH---GGVCAVYVV 220 (336)
T ss_dssp SCTTCCC-------EEEEEECS-----SSTT--TTHHHHGGGEEE---EEEEEEEES
T ss_pred CChHHcccccCCCCeeEEEECC-----CCHH--HHHHHHHHhcCC---CcEEEEEeC
Confidence 999873 33 499999842 2222 378999999999 999987764
No 188
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.17 E-value=1.9e-11 Score=100.82 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=78.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--CC-CccceeEehh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--AI-SPADAVLLKW 197 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~~-p~~D~v~~~~ 197 (296)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++ ..++++++.+|..+ +. ++||+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 3567999999999999999999988 889999999 999988875 34689999999865 22 1299999863
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
. ......+++++.+.|+| ||.+++.+..+
T Consensus 135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLAK---NALLIAVNALR 163 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred C-----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence 2 23345889999999999 88877755443
No 189
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.16 E-value=4.6e-11 Score=101.24 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=79.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C-------Cc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I-------SP 189 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~-------p~ 189 (296)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++ ..++|+++.+|..+ + . ..
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34567999999999999999999987 789999999 899988876 34689999999865 2 2 35
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
||+|++... ......+++++.+.|+| ||.+++.+..+
T Consensus 157 fD~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred EEEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence 999998542 23346889999999999 88887766444
No 190
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.16 E-value=2.2e-10 Score=102.22 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=83.9
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC-
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI- 187 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~- 187 (296)
+..++.... +.+..+|||+|||+|.+++.++... |+.+++++|+ +.+++.|++ ..+++++..+|+.+ +.
T Consensus 192 a~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 192 AQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 344455555 5677899999999999999999988 8899999999 999988876 22389999999998 43
Q ss_pred -CccceeEehhhhccC-C-chH----HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 188 -SPADAVLLKWILHDW-N-DEE----CVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 188 -p~~D~v~~~~vlh~~-~-d~~----~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+.||+|++.-..+.. . ..+ -..+++.+.+.|+| ||++++..
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t 317 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLT 317 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEE
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 348999995332211 1 111 25789999999999 99998864
No 191
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.16 E-value=3.5e-11 Score=101.33 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=80.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C---------
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I--------- 187 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~--------- 187 (296)
..+..+|||||||+|..+..+++.+| ..+++++|+ +.+++.|++ ..++++++.+|..+ + .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 45678999999999999999999987 789999999 999888875 23579999999865 1 1
Q ss_pred --------CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 188 --------SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 188 --------p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
..||+|++... .+....+++++.+.|+| ||++++.+...+
T Consensus 138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 185 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKP---GGLLIADNVLWD 185 (239)
T ss_dssp GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCC---CeEEEEEccccC
Confidence 45999998643 33455789999999999 888887665443
No 192
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.15 E-value=1.9e-11 Score=97.86 Aligned_cols=97 Identities=11% Similarity=0.030 Sum_probs=74.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C-CccceeEehh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I-SPADAVLLKW 197 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~-p~~D~v~~~~ 197 (296)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++++++.+|+.+. . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 35679999999999999999887 6679999999 999988876 235899999998772 2 3599999976
Q ss_pred hhccCCchHHHHHHHHHH--HhcccCCCCcEEEEEee
Q 022515 198 ILHDWNDEECVKILKKCK--EAITSDGKKGKVIIIDM 232 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~--~aL~p~~~gG~lli~e~ 232 (296)
.+|. .....+++.+. +.|+| ||.+++...
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~ 139 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETD 139 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEEC
Confidence 5532 22345666666 89999 787777654
No 193
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.15 E-value=4.9e-11 Score=96.15 Aligned_cols=97 Identities=14% Similarity=0.048 Sum_probs=74.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC-------CCccceeE
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA-------ISPADAVL 194 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~-------~p~~D~v~ 194 (296)
.+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ ..++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3567999999999999998887 45679999999 999988876 246899999998772 23599999
Q ss_pred ehhhhccCCchHHHHHHHHH--HHhcccCCCCcEEEEEee
Q 022515 195 LKWILHDWNDEECVKILKKC--KEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~--~~aL~p~~~gG~lli~e~ 232 (296)
+...+|....+ ..++.+ .+.|+| ||.+++...
T Consensus 122 ~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~~~ 155 (187)
T 2fhp_A 122 LDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCETD 155 (187)
T ss_dssp ECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred ECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEEeC
Confidence 98775533333 445555 788999 887776543
No 194
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.14 E-value=7.9e-11 Score=104.00 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=76.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~v 198 (296)
..++.+|||||||+|.++..+++. +..+++++|+.++++.|++ ..++++++.+|+.+ +.| .||+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 345679999999999999988886 4568999999557777665 45789999999988 555 4999998765
Q ss_pred hccCC-chHHHHHHHHHHHhcccCCCCcEEE
Q 022515 199 LHDWN-DEECVKILKKCKEAITSDGKKGKVI 228 (296)
Q Consensus 199 lh~~~-d~~~~~iL~~~~~aL~p~~~gG~ll 228 (296)
.|.+. ......+++++.+.|+| ||+++
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 142 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhcccHHHHHHHHHHHHhhcCC---CeEEE
Confidence 55443 22345789999999999 88876
No 195
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=99.14 E-value=1.7e-10 Score=101.27 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=79.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C---------CCCeeEEeccCCCC----CCcccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D---------LANLKYVGGDMFEA----ISPADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---------~~ri~~~~~D~~~~----~p~~D~v 193 (296)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ . .+|++++.+|..+. ...||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 3568999999999999999999878889999999 999988876 1 47899999998762 2259999
Q ss_pred Eehhhhcc---CCchH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 194 LLKWILHD---WNDEE--CVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 194 ~~~~vlh~---~~d~~--~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
++....|. -+.+. ..+++++++++|+| ||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99766543 11111 25889999999999 88877753
No 196
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.14 E-value=1.6e-10 Score=96.30 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=78.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-----CCCeEEeccc-hhHhhccCC-----C-----CCCeeEEeccCCCCC----
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-----PKLECTCFDL-PHVVNGLDS-----D-----LANLKYVGGDMFEAI---- 187 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----~-----~~ri~~~~~D~~~~~---- 187 (296)
..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ . .++++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 5789999999 899988876 2 578999999998743
Q ss_pred ---CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 188 ---SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 188 ---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
..||+|++...+|++ ++++.+.|+| ||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEc
Confidence 249999999988754 4678889999 898888754
No 197
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=99.13 E-value=1.4e-10 Score=99.91 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=76.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCC--C-C-CccceeEe
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFE--A-I-SPADAVLL 195 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~--~-~-p~~D~v~~ 195 (296)
++.+|||||||+|.++..+++..|..+++++|+ |.+++.|++ . .+|++++.+|..+ + . ..||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998777789999999 999988875 2 4799999999876 2 2 25999999
Q ss_pred hhhhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 022515 196 KWILHDWNDEE--CVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 196 ~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
....+..+... ..+++++++++|+| ||.+++.
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 65443332211 24789999999999 7776664
No 198
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.13 E-value=5.6e-11 Score=99.18 Aligned_cols=99 Identities=14% Similarity=0.232 Sum_probs=80.0
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C------Ccc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I------SPA 190 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~------p~~ 190 (296)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ ..++++++.+|+.+. . ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 45678999999999999999999887 789999999 899888875 347899999998652 1 459
Q ss_pred ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
|+|++.. +......+++++.+.|+| ||.+++.+...
T Consensus 147 D~v~~d~-----~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDA-----DKENCSAYYERCLQLLRP---GGILAVLRVLW 182 (229)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred cEEEECC-----CHHHHHHHHHHHHHHcCC---CeEEEEECCCc
Confidence 9999843 234456789999999999 88887766544
No 199
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.13 E-value=3.1e-10 Score=94.30 Aligned_cols=95 Identities=11% Similarity=0.087 Sum_probs=79.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEehhhhcc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLKWILHD 201 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~ 201 (296)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.+++ ...+..+..+|... +.| .||++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 567899999999999998877 8999999999 999998887 56888999999998 444 5999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
..+.+....+ ++.++|++ + +++|.=
T Consensus 181 LE~q~~~~~~-~ll~aL~~---~-~vvVsf 205 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT---P-RMAVSF 205 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC---S-EEEEEE
T ss_pred hhhhchhhHH-HHHHHhcC---C-CEEEEc
Confidence 9877655555 88899998 4 444443
No 200
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.12 E-value=4.8e-11 Score=97.86 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=75.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CC--CCeeEEeccCCC-C-C---Cc-cceeEe
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DL--ANLKYVGGDMFE-A-I---SP-ADAVLL 195 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~--~ri~~~~~D~~~-~-~---p~-~D~v~~ 195 (296)
++.+|||+|||+|.++..++.+. ..+++++|+ +.+++.|++ .. ++++++.+|+.+ . . .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 45799999999999999887764 358999999 999998876 22 689999999876 2 1 36 999999
Q ss_pred hhhhccCCchHHHHHHHHH--HHhcccCCCCcEEEEEeee
Q 022515 196 KWILHDWNDEECVKILKKC--KEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~--~~aL~p~~~gG~lli~e~~ 233 (296)
...+| .. ....+++.+ .+.|+| ||.+++....
T Consensus 132 ~~~~~-~~--~~~~~l~~~~~~~~Lkp---gG~l~i~~~~ 165 (201)
T 2ift_A 132 DPPFH-FN--LAEQAISLLCENNWLKP---NALIYVETEK 165 (201)
T ss_dssp CCCSS-SC--HHHHHHHHHHHTTCEEE---EEEEEEEEES
T ss_pred CCCCC-Cc--cHHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 87754 33 345778888 567999 8887776543
No 201
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=99.12 E-value=9.1e-11 Score=98.76 Aligned_cols=98 Identities=12% Similarity=0.121 Sum_probs=78.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C-------Cc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I-------SP 189 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~-------p~ 189 (296)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++ ..++++++.+|..+ + . ..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 34668999999999999999999987 789999999 999988875 34689999999875 2 2 35
Q ss_pred cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
||+|++.. +......+++++.+.|+| ||.+++.+..
T Consensus 148 fD~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d~~~ 183 (237)
T 3c3y_A 148 YDFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYDNTL 183 (237)
T ss_dssp EEEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECTT
T ss_pred cCEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEecCC
Confidence 99999853 334456899999999999 7776665443
No 202
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.12 E-value=1.5e-10 Score=99.50 Aligned_cols=100 Identities=21% Similarity=0.227 Sum_probs=81.6
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC-CC-ccceeEehhhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA-IS-PADAVLLKWIL 199 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~-~p-~~D~v~~~~vl 199 (296)
+.++.+|||+|||+|.++..+++..+..+++++|+ |.+++.+++ ...++.++.+|+.+. .+ .||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999999 999988876 335789999999873 32 59999986432
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
...++++++.+.|+| ||.+++.+....+
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~~ 224 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAEK 224 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGG
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEEEcCccc
Confidence 334689999999999 8988887765543
No 203
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.11 E-value=6.7e-11 Score=98.75 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=77.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCC------CCeEEeccc-hhHhhccCC-----C-----CCCeeEEeccCCCCCC--
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFP------KLECTCFDL-PHVVNGLDS-----D-----LANLKYVGGDMFEAIS-- 188 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----~-----~~ri~~~~~D~~~~~p-- 188 (296)
..++.+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ . ..+++++.+|..+..+
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998765 369999999 999988876 1 4689999999987443
Q ss_pred -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.||+|++...+|+++ +++.+.|+| ||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence 499999999998765 568888999 88888764
No 204
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.11 E-value=4.9e-10 Score=94.48 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=81.0
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC-C--
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI-S-- 188 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~-p-- 188 (296)
.++..+. ..++.+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++..+|+.+.. +
T Consensus 82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 4455555 567789999999999999999998 779999999 899888875 2378999999998854 3
Q ss_pred ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.||+|++ +.++. ..+++++.++|+| ||++++...
T Consensus 158 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~ 191 (248)
T 2yvl_A 158 IFHAAFV-----DVREP--WHYLEKVHKSLME---GAPVGFLLP 191 (248)
T ss_dssp CBSEEEE-----CSSCG--GGGHHHHHHHBCT---TCEEEEEES
T ss_pred cccEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeC
Confidence 4999997 33443 3679999999999 999988774
No 205
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.10 E-value=5e-11 Score=106.35 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=74.9
Q ss_pred CCCCEEEEecCC------chHHHHHHHHH-CCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CC--------Cccc
Q 022515 129 EGLNSLVDVGGG------IGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AI--------SPAD 191 (296)
Q Consensus 129 ~~~~~vLDvGgG------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~--------p~~D 191 (296)
.+..+||||||| +|..+..++++ +|+.+++++|+ +.+. . ...+|+|+.+|+.+ ++ ..||
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~-~~~rI~fv~GDa~dlpf~~~l~~~d~sFD 290 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---V-DELRIRTIQGDQNDAEFLDRIARRYGPFD 290 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---G-CBTTEEEEECCTTCHHHHHHHHHHHCCEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---h-cCCCcEEEEecccccchhhhhhcccCCcc
Confidence 356899999999 66667777765 69999999999 7763 1 45789999999988 43 3499
Q ss_pred eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
+|++.. .|++++ ..+.|++++++||| ||.+++.|..
T Consensus 291 lVisdg-sH~~~d--~~~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 291 IVIDDG-SHINAH--VRTSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEEECS-CCCHHH--HHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEEECC-cccchh--HHHHHHHHHHhcCC---CeEEEEEecc
Confidence 999864 566543 45889999999999 8888887765
No 206
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=99.09 E-value=9.6e-11 Score=101.28 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=78.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCCC---CC-ccceeE
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFEA---IS-PADAVL 194 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~~---~p-~~D~v~ 194 (296)
.++.+|||||||+|..+..+++..|..+++++|+ |.+++.+++ . .+|++++.+|..+. .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 3568999999999999999998878889999999 999988876 1 47899999998762 23 599999
Q ss_pred ehhhhccCCchHH--HHHHHHHHHhcccCCCCcEEEEE
Q 022515 195 LKWILHDWNDEEC--VKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 195 ~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
+....+..+.+.. .+++++++++|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 9654433233222 5899999999999 7877765
No 207
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=99.08 E-value=8.4e-11 Score=103.01 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=74.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCCC----CCccceeE
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFEA----ISPADAVL 194 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~~----~p~~D~v~ 194 (296)
.++.+|||||||+|..+..+++..|..+++++|+ |.+++.|++ . .+|++++.+|..+. ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3567999999999999999999878899999999 999998876 1 47899999998762 22599999
Q ss_pred ehhhhccCCchHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 022515 195 LKWILHDWNDEEC--VKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 195 ~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+...-|.-+.... .+++++++++|+| ||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEE---EEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence 8554332222221 5889999999999 77776643
No 208
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.08 E-value=4.9e-12 Score=106.57 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=96.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhhc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWILH 200 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh 200 (296)
++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 6789999999999999999987 489999999 999988875 22689999999988 422 599999999998
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
+.++.. ..+.+++++|+| ||.+ +++......... . .+-.+....+++..++...|.-.+
T Consensus 156 ~~~~~~--~~~~~~~~~L~p---gG~~-i~~~~~~~~~~~------------~---~~lp~~~~~~~~~~~l~~~g~~~i 214 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSP---DGFE-IFRLSKKITNNI------------V---YFLPRNADIDQVASLAGPGGQVEI 214 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSS---CHHH-HHHHHHHHCSCE------------E---EEEETTBCHHHHHHTTCTTCCEEE
T ss_pred Ccchhh--hHHHHHHhhcCC---ccee-HHHHHHhhCCce------------E---EECCCCCCHHHHHHHhccCCCEEE
Confidence 876654 367789999999 8874 333211110000 0 001223367788888888776655
Q ss_pred EEEEcCC
Q 022515 281 KIIPILG 287 (296)
Q Consensus 281 ~~~~~~~ 287 (296)
......+
T Consensus 215 ~~~~~~~ 221 (241)
T 3gdh_A 215 EQNFLNN 221 (241)
T ss_dssp EEEEETT
T ss_pred EehhhcC
Confidence 5444443
No 209
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=99.08 E-value=9.4e-11 Score=98.34 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=79.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC---CC------Cccc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE---AI------SPAD 191 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~---~~------p~~D 191 (296)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++ ..+++++..+|..+ .. ..||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 4567999999999999999999987 789999999 899888875 34689999999754 11 4599
Q ss_pred eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
+|++... .+....+++++.+.|+| ||.+++.+..+.
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCcC
Confidence 9998543 34456789999999999 888777665443
No 210
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.08 E-value=2.8e-10 Score=94.79 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=76.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC---C-------CCCeeEEeccCCCCC---Cccce
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS---D-------LANLKYVGGDMFEAI---SPADA 192 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~-------~~ri~~~~~D~~~~~---p~~D~ 192 (296)
..++.+|||||||+|..+..+++.. |..+++++|+ +.+++.+++ . .++++++.+|..... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999885 6679999999 899988865 1 468999999987632 24999
Q ss_pred eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
|++...++++. +++.+.|+| ||++++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKP---GGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcCC---CcEEEEEEe
Confidence 99988887543 578899999 898888653
No 211
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.07 E-value=5.2e-10 Score=91.33 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=67.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHH
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEEC 207 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~ 207 (296)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++...+++++.+|+.+-...||+|++...+|++.+...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 35679999999999999999887 5557999999 999998876222899999999872246999999999998876544
Q ss_pred HHHHHHHHHhc
Q 022515 208 VKILKKCKEAI 218 (296)
Q Consensus 208 ~~iL~~~~~aL 218 (296)
..+++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 57788887776
No 212
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.07 E-value=3.5e-10 Score=96.68 Aligned_cols=97 Identities=14% Similarity=0.053 Sum_probs=71.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC-CC------CCeeEE--eccCCC-CCCccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-DL------ANLKYV--GGDMFE-AISPADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~------~ri~~~--~~D~~~-~~p~~D~v~~~~ 197 (296)
+.++.+|||||||+|.++..+++. .+++++|+.+++..+++ .. .++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 556789999999999999988887 68999999336444432 11 278999 999987 433599999976
Q ss_pred hhccCCch-----HHHHHHHHHHHhcccCCCCc--EEEEEe
Q 022515 198 ILHDWNDE-----ECVKILKKCKEAITSDGKKG--KVIIID 231 (296)
Q Consensus 198 vlh~~~d~-----~~~~iL~~~~~aL~p~~~gG--~lli~e 231 (296)
. +..+.. ....+|+.+.++|+| || .+++-.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv 185 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKV 185 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEE
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEe
Confidence 6 443321 122489999999999 89 777644
No 213
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=99.07 E-value=1.1e-10 Score=102.63 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=76.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---C------CCCeeEEeccCCCC---C-CccceeE
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---D------LANLKYVGGDMFEA---I-SPADAVL 194 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------~~ri~~~~~D~~~~---~-p~~D~v~ 194 (296)
.++.+|||||||+|..+..+++..|..+++++|+ |.+++.|++ . .+|++++.+|..+. . ..||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3557999999999999999998778899999999 999988876 1 46899999998762 2 2599999
Q ss_pred ehhhhccCCchHH--HHHHHHHHHhcccCCCCcEEEEE
Q 022515 195 LKWILHDWNDEEC--VKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 195 ~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
+...-+.-+.+.. .+++++++++|+| ||.+++.
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8543221112221 5889999999999 7777664
No 214
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.07 E-value=3.2e-10 Score=97.48 Aligned_cols=97 Identities=15% Similarity=0.026 Sum_probs=71.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC-CC------CCeeEE--eccCCC-CCCccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-DL------ANLKYV--GGDMFE-AISPADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~------~ri~~~--~~D~~~-~~p~~D~v~~~~ 197 (296)
+.++.+|||||||+|.++..++++ .+++++|+.+++..+++ .. .++.++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456789999999999999998887 58999999336544432 11 278999 999987 433599999976
Q ss_pred hhccCCch-----HHHHHHHHHHHhcccCCCCc--EEEEEe
Q 022515 198 ILHDWNDE-----ECVKILKKCKEAITSDGKKG--KVIIID 231 (296)
Q Consensus 198 vlh~~~d~-----~~~~iL~~~~~aL~p~~~gG--~lli~e 231 (296)
. +..+.. ....+|+.+.++|+| || .+++..
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~ 193 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKV 193 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEE
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEe
Confidence 6 433221 122479999999999 89 777643
No 215
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=99.06 E-value=1.1e-10 Score=101.02 Aligned_cols=104 Identities=16% Similarity=0.261 Sum_probs=77.1
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS 188 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p 188 (296)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +.+
T Consensus 17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 455666665 5677899999999999999999984 58999999 899888765 12689999999998 777
Q ss_pred ccceeEehhhhccCCchHHHHHHH--------------HH--HHhcccCCCCcEEE
Q 022515 189 PADAVLLKWILHDWNDEECVKILK--------------KC--KEAITSDGKKGKVI 228 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~~iL~--------------~~--~~aL~p~~~gG~ll 228 (296)
.||+|+++. -++|..+....+|. ++ +++++| ||+++
T Consensus 93 ~fD~vv~nl-py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~y 144 (285)
T 1zq9_A 93 FFDTCVANL-PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKLY 144 (285)
T ss_dssp CCSEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTTC
T ss_pred hhcEEEEec-CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCccc
Confidence 899998843 33344444334443 22 368899 88653
No 216
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.06 E-value=6.8e-11 Score=111.97 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=84.5
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---C--CCCeeEEeccCCC---CC-C-ccceeEeh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---D--LANLKYVGGDMFE---AI-S-PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~--~~ri~~~~~D~~~---~~-p-~~D~v~~~ 196 (296)
+.++.+|||||||.|.++..|++. +.++|++|+ +.+++.|+. . .-+|+|.+++..+ .. + .||+|++.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 345679999999999999999997 789999999 999988875 2 2469999998875 22 2 59999999
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
.+|||.++++...-+.++.+.|++ +++.+++..+..+
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e 178 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKE 178 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTT
T ss_pred cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEecccc
Confidence 999999988755566678888888 7888887765544
No 217
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=99.06 E-value=1e-10 Score=101.04 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=75.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------------CCCeeEEeccCCCC---CCc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------------LANLKYVGGDMFEA---ISP 189 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------------~~ri~~~~~D~~~~---~p~ 189 (296)
.++.+|||||||+|.++..+++. |..+++++|+ |.+++.|++ . .+|++++.+|..+- ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35679999999999999999998 8889999999 999988765 2 46899999997652 235
Q ss_pred cceeEehhhhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 022515 190 ADAVLLKWILHDWNDEE--CVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
||+|++....+..+... ..+++++++++|+| ||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 99999865543222222 25789999999999 7777665
No 218
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=99.06 E-value=1.4e-10 Score=102.46 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=77.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCC---CC--Ccccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFE---AI--SPADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~---~~--p~~D~v 193 (296)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ . ..|++++.+|..+ .. ..||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999999 999998876 1 4689999999865 22 259999
Q ss_pred EehhhhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 022515 194 LLKWILHDWNDEE--CVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 194 ~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
++....+..+.+. ..+++++++++|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9854321111111 35899999999999 7777664
No 219
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=99.05 E-value=7.3e-11 Score=103.02 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=75.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCC--C-C-CccceeE
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFE--A-I-SPADAVL 194 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~--~-~-p~~D~v~ 194 (296)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ . .+|++++.+|..+ + . ..||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999999 999988876 1 5789999999865 2 2 2599999
Q ss_pred ehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 195 LKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 195 ~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+....+..+.. ...+++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 86544322221 124789999999999 77776644
No 220
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.05 E-value=2.7e-10 Score=93.47 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=74.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC--CCC--ccceeEehhhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE--AIS--PADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~--~~p--~~D~v~~~~vl 199 (296)
++.+|||+|||+|.++..++++.. .+++++|+ +.+++.|++ ..++++++.+|+.+ +.+ .||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 457999999999999998887743 48999999 999998876 22689999999876 322 49999997765
Q ss_pred ccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 022515 200 HDWNDEECVKILKKCKE--AITSDGKKGKVIIIDMI 233 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~e~~ 233 (296)
| ... ...+++.+.+ .|+| ||.+++....
T Consensus 133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RGL--LEETINLLEDNGWLAD---EALIYVESEV 162 (202)
T ss_dssp S-TTT--HHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred C-CCc--HHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 4 332 3467777766 4999 7877766543
No 221
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.04 E-value=2.7e-10 Score=92.54 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=72.4
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCC---------CeEEeccchhHhhccCCCCCCeeEE-eccCCC-C--------CC
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPK---------LECTCFDLPHVVNGLDSDLANLKYV-GGDMFE-A--------IS 188 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~ri~~~-~~D~~~-~--------~p 188 (296)
+.++.+|||||||+|.++..++++++. .+++++|+.++. ...++++. .+|+.+ + .+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----PLEGATFLCPADVTDPRTSQRILEVLP 94 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----CCTTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----cCCCCeEEEeccCCCHHHHHHHHHhcC
Confidence 456789999999999999999999865 799999994321 23568888 899876 2 22
Q ss_pred --ccceeEehhhhcc----CCchH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 189 --PADAVLLKWILHD----WNDEE-----CVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 189 --~~D~v~~~~vlh~----~~d~~-----~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.||+|++...+|. ..+.. ...+++++.++|+| ||++++...
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 4999998654432 12221 14789999999999 898887654
No 222
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.04 E-value=4.7e-10 Score=91.23 Aligned_cols=102 Identities=12% Similarity=0.309 Sum_probs=73.2
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCC-----------
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAI----------- 187 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~----------- 187 (296)
++.+.+. .++++.+|||+|||+|.++..++++ ..+++++|+.++ . ...+++++.+|+.+..
T Consensus 15 ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~-~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 15 FLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----E-EIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp HHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----C-CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred HHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----c-cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 4455554 2467789999999999999999888 779999999332 1 3467999999998731
Q ss_pred ---CccceeEehhhhcc---------CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 188 ---SPADAVLLKWILHD---------WNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 188 ---p~~D~v~~~~vlh~---------~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+.||+|++...... ...+....+|+.+.+.|+| ||++++..
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~ 139 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQ 139 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 36999998432110 0112235789999999999 88877544
No 223
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.02 E-value=1.6e-09 Score=99.74 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=82.4
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC--ccceeEe
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS--PADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p--~~D~v~~ 195 (296)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ...+++++.+|+.+ + ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 556789999999999999999999877 79999999 888877765 34579999999987 3 33 4999996
Q ss_pred ------hhhhccCCch-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 196 ------KWILHDWNDE-------EC-------VKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 196 ------~~vlh~~~d~-------~~-------~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
..+++..++. +. .++|+++.+.|+| ||++++.+...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCC
Confidence 4455554442 11 5789999999999 89988877544
No 224
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=99.02 E-value=6.6e-10 Score=94.85 Aligned_cols=90 Identities=13% Similarity=0.053 Sum_probs=74.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCCCCCccceeEehhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFEAISPADAVLLKWI 198 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~~~p~~D~v~~~~v 198 (296)
..+.+|||||||+|..+..+++. + .+++++|+ +.+++.|++ . .+|++++.+|..+-...||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35679999999999999999988 7 89999999 999999986 1 368999999988733569999985
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
.+++. .++++++++|+| ||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence 34443 489999999999 7877764
No 225
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=99.02 E-value=1.9e-10 Score=100.01 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=74.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCC--C-C-CccceeEe
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFE--A-I-SPADAVLL 195 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~--~-~-p~~D~v~~ 195 (296)
.+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ . .+|++++.+|..+ + . ..||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 457999999999999999999878889999999 999988776 2 5799999999765 2 2 24999998
Q ss_pred hhhhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 196 KWILHDWNDE---ECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 196 ~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
...-+..... ...+++++++++|+| ||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 4332201110 125789999999999 7777664
No 226
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=99.01 E-value=5e-10 Score=97.71 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=69.8
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-----hhHhhccCC-C--CCCeeEEec-cCCC-CCCccceeEehh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-----PHVVNGLDS-D--LANLKYVGG-DMFE-AISPADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~-~--~~ri~~~~~-D~~~-~~p~~D~v~~~~ 197 (296)
+.++.+|||||||+|.++..++++ .+++++|+ +.+++.... . .++++++.+ |+.. +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 456789999999999999998887 47899997 444333221 1 267999999 9887 444699999966
Q ss_pred hhc---cCCchH-HHHHHHHHHHhcccCCCCcEEEE
Q 022515 198 ILH---DWNDEE-CVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 198 vlh---~~~d~~-~~~iL~~~~~aL~p~~~gG~lli 229 (296)
..+ ...+.. ...+|+.+.++|+| ||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence 543 222222 23689999999999 887665
No 227
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.01 E-value=1.8e-09 Score=88.46 Aligned_cols=89 Identities=20% Similarity=0.135 Sum_probs=71.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCCccceeEehhhhccCC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAISPADAVLLKWILHDWN 203 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~ 203 (296)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ ..-+++++.+|+.+-...||+|++.-.+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 456799999999999999998873 347999999 899988775 11289999999987323699999988888776
Q ss_pred chHHHHHHHHHHHhc
Q 022515 204 DEECVKILKKCKEAI 218 (296)
Q Consensus 204 d~~~~~iL~~~~~aL 218 (296)
......+++++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 555567888888776
No 228
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.98 E-value=1.1e-09 Score=98.36 Aligned_cols=121 Identities=16% Similarity=0.118 Sum_probs=90.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWI 198 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~v 198 (296)
.++.+|||+|||+|.+++.++...+..+++++|+ +.+++.|++ ..+++++..+|+.+ +.+ .||+|++.-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 4668999999999999999999987779999999 999998876 23689999999998 543 5999999543
Q ss_pred hccCC-----chH-HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHH
Q 022515 199 LHDWN-----DEE-CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLF 272 (296)
Q Consensus 199 lh~~~-----d~~-~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 272 (296)
.+... .++ -.++++.+++.| + |+++++.. +.+.+++.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~----g~~~~i~~-------------------------------~~~~~~~~~ 339 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL-E----KRGVFITT-------------------------------EKKAIEEAI 339 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE-E----EEEEEEES-------------------------------CHHHHHHHH
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc-C----CeEEEEEC-------------------------------CHHHHHHHH
Confidence 32211 111 257888899988 5 44444321 345667788
Q ss_pred HhcCCceeEEEEc
Q 022515 273 TYAGFSDYKIIPI 285 (296)
Q Consensus 273 ~~aGf~~~~~~~~ 285 (296)
.+.||+..+..++
T Consensus 340 ~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 340 AENGFEIIHHRVI 352 (373)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCEEEEEEEE
Confidence 9999998887776
No 229
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.97 E-value=1.9e-09 Score=92.38 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=91.0
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC-CccceeEehhh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI-SPADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~-p~~D~v~~~~v 198 (296)
..++.+|||+|||+|.+++.++++. ..+++++|+ |..++.+++ ..+++++..+|..+ .. ..||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 4578899999999999999998873 568999999 998888765 57899999999988 32 35999987532
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS 278 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~ 278 (296)
..+..+|..+.+.|+| ||.|.+.+....+... ....+.++++.++.|++
T Consensus 202 ------~~~~~~l~~a~~~lk~---gG~ih~~~~~~e~~~~----------------------~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 202 ------VRTHEFIPKALSIAKD---GAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYD 250 (278)
T ss_dssp ------SSGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCE
T ss_pred ------CcHHHHHHHHHHHcCC---CCEEEEEeeecccccc----------------------hhHHHHHHHHHHHcCCc
Confidence 1234678889999999 8887776655432211 11456677888899987
Q ss_pred ee
Q 022515 279 DY 280 (296)
Q Consensus 279 ~~ 280 (296)
+.
T Consensus 251 v~ 252 (278)
T 3k6r_A 251 VE 252 (278)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 230
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.97 E-value=9.8e-10 Score=98.20 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=72.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhhcc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWILHD 201 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~ 201 (296)
++.+|||||||+|.+++..++.. ..+++++|..++++.|++ ..++|+++.+|+.+ +.| .+|+|++-.+-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 46799999999999987666653 348999999557777765 67999999999988 666 5999998544333
Q ss_pred CCch-HHHHHHHHHHHhcccCCCCcEEE
Q 022515 202 WNDE-ECVKILKKCKEAITSDGKKGKVI 228 (296)
Q Consensus 202 ~~d~-~~~~iL~~~~~aL~p~~~gG~ll 228 (296)
...+ ....++....+.|+| ||.++
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp---~G~~i 186 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKE---GGLLL 186 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred ccccchhhhHHHHHHhhCCC---CceEC
Confidence 3333 345778888899999 77765
No 231
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.97 E-value=2.7e-09 Score=94.15 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=74.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCC-CeeEEeccCCCC-------CCccceeE
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLA-NLKYVGGDMFEA-------ISPADAVL 194 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-ri~~~~~D~~~~-------~p~~D~v~ 194 (296)
++.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ ..+ +++++.+|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45799999999999999999864 49999999 999988876 233 599999999872 12599999
Q ss_pred ehhhh---------ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 195 LKWIL---------HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 195 ~~~vl---------h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
+.--. +++ .+....+++++.+.|+| ||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~-~~~~~~ll~~~~~~Lkp---gG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL-FDHLPLMLDICREILSP---KALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEH-HHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred ECCccccCCchHHHHHH-HHHHHHHHHHHHHhcCc---CcEEEEEECC
Confidence 83210 111 22345889999999999 8887766543
No 232
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.96 E-value=9.2e-10 Score=94.65 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=78.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC-----C-cccee
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI-----S-PADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~-----p-~~D~v 193 (296)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ...+++++.+|+.+ +. + .||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999998877 79999999 888887765 23589999999876 32 3 59999
Q ss_pred Eeh------hhhcc---CCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 194 LLK------WILHD---WND-------EECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 194 ~~~------~vlh~---~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
++. .+++. |.. +...++|+++.+.|+| ||++++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCC
Confidence 986 23321 111 1235899999999999 88887766544
No 233
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.89 E-value=3e-09 Score=97.53 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=78.2
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC-ccceeEe-
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS-PADAVLL- 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p-~~D~v~~- 195 (296)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ... +.++.+|..+ + .+ .||+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 557789999999999999999998765 69999999 888887765 234 9999999876 3 23 4999995
Q ss_pred -----hhhhc-------cCCchHH-------HHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 196 -----KWILH-------DWNDEEC-------VKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 196 -----~~vlh-------~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
..+++ .|..++. .++|+++.+.|+| ||+|+......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccC
Confidence 12222 2333222 6799999999999 88887765443
No 234
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.88 E-value=6.4e-09 Score=89.72 Aligned_cols=115 Identities=12% Similarity=0.040 Sum_probs=81.4
Q ss_pred cCCCCEEEEecC------CchHHHHHHHHHCC-CCeEEeccc-hhHhhccCCCCCCeeE-EeccCCC-CCC-ccceeEeh
Q 022515 128 FEGLNSLVDVGG------GIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDSDLANLKY-VGGDMFE-AIS-PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGg------G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~ri~~-~~~D~~~-~~p-~~D~v~~~ 196 (296)
+.++.+|||+|| |+|. ..+++..| +.+++++|+ +. + .++++ +.+|+.+ +.+ .||+|++.
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------~~v~~~i~gD~~~~~~~~~fD~Vvsn 130 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------SDADSTLIGDCATVHTANKWDLIISD 130 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------CSSSEEEESCGGGCCCSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------CCCEEEEECccccCCccCcccEEEEc
Confidence 567789999999 5587 44566666 689999999 55 2 36889 9999988 444 59999985
Q ss_pred hhhcc-----CC----chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515 197 WILHD-----WN----DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267 (296)
Q Consensus 197 ~vlh~-----~~----d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 267 (296)
...+. .+ .+....+|+.++++|+| ||++++...... ...+
T Consensus 131 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~~~----------------------------~~~~ 179 (290)
T 2xyq_A 131 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITEHS----------------------------WNAD 179 (290)
T ss_dssp CCCCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECSSS----------------------------CCHH
T ss_pred CCccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEeccC----------------------------CHHH
Confidence 32111 01 12245789999999999 888887542110 2246
Q ss_pred HHHHHHhcCCceeEEE
Q 022515 268 WTKLFTYAGFSDYKII 283 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~~ 283 (296)
+.+++++.||..+++.
T Consensus 180 l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 180 LYKLMGHFSWWTAFVT 195 (290)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHHHcCCcEEEEE
Confidence 7788888898877665
No 235
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.88 E-value=9.3e-09 Score=93.57 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=78.7
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-C-Cccce
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-I-SPADA 192 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-~-p~~D~ 192 (296)
+..+++.+. ..+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.| .+++++.+|+++. . +.||+
T Consensus 28 ~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~~~~~fD~ 101 (421)
T 2ih2_A 28 VDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEPGEAFDL 101 (421)
T ss_dssp HHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCCSSCEEE
T ss_pred HHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcCccCCCCE
Confidence 344444444 3345699999999999999999987 6789999999 8888766 6799999999883 2 35999
Q ss_pred eEehhhh----------ccCCchH-----------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 193 VLLKWIL----------HDWNDEE-----------------CVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 193 v~~~~vl----------h~~~d~~-----------------~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
|+++=-. ++.+++. ...+++++.+.|+| ||+++++-.
T Consensus 102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p 165 (421)
T 2ih2_A 102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 165 (421)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 9994111 1122221 12679999999999 898887653
No 236
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.87 E-value=1.7e-09 Score=94.10 Aligned_cols=90 Identities=13% Similarity=0.235 Sum_probs=66.0
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCCc
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AISP 189 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p~ 189 (296)
...+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+.
T Consensus 31 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~ 106 (299)
T 2h1r_A 31 LDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK 106 (299)
T ss_dssp HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCC
T ss_pred HHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCccc
Confidence 345555555 567789999999999999999987 568999999 899888765 23689999999998 6667
Q ss_pred cceeEehhhhccCCchHHHHHH
Q 022515 190 ADAVLLKWILHDWNDEECVKIL 211 (296)
Q Consensus 190 ~D~v~~~~vlh~~~d~~~~~iL 211 (296)
||+|++.- -+++..+....++
T Consensus 107 ~D~Vv~n~-py~~~~~~~~~ll 127 (299)
T 2h1r_A 107 FDVCTANI-PYKISSPLIFKLI 127 (299)
T ss_dssp CSEEEEEC-CGGGHHHHHHHHH
T ss_pred CCEEEEcC-CcccccHHHHHHH
Confidence 99998854 4456666555666
No 237
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.85 E-value=5.1e-09 Score=88.39 Aligned_cols=78 Identities=10% Similarity=0.264 Sum_probs=59.7
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC-cc
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS-PA 190 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p-~~ 190 (296)
...+++.+. ..++.+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++ +.
T Consensus 19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 445555555 5677899999999999999999985 68999999 899988875 23689999999988 655 23
Q ss_pred ceeEehhh
Q 022515 191 DAVLLKWI 198 (296)
Q Consensus 191 D~v~~~~v 198 (296)
+..++++.
T Consensus 95 ~~~vv~nl 102 (244)
T 1qam_A 95 SYKIFGNI 102 (244)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEeC
Confidence 33444433
No 238
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.82 E-value=5.9e-09 Score=95.30 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=81.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-C--CC--ccceeEe--
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-A--IS--PADAVLL-- 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~--~p--~~D~v~~-- 195 (296)
..++.+|||+|||+|..+.++++..++.+++++|+ +..++.+++ ..-+++++.+|+.+ + ++ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 45678999999999999999999998899999999 888877765 33468999999987 3 33 4999986
Q ss_pred ----hhhhccCCch-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 196 ----KWILHDWNDE-------EC-------VKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 196 ----~~vlh~~~d~-------~~-------~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
..+++..++. +. .++|+++.+.|+| ||++++.+...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence 3455544432 11 4889999999999 89888877544
No 239
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.81 E-value=2.1e-09 Score=90.80 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=75.4
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC---
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--- 188 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--- 188 (296)
...+++.+. ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +.+
T Consensus 18 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 93 (245)
T 1yub_A 18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCC
Confidence 455666665 5677899999999999999999984 79999999 899998876 24689999999998 554
Q ss_pred ccceeEehhhhccCCchHHH----------HHH----HHHHHhcccCCCCcEEEEEe
Q 022515 189 PADAVLLKWILHDWNDEECV----------KIL----KKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 189 ~~D~v~~~~vlh~~~d~~~~----------~iL----~~~~~aL~p~~~gG~lli~e 231 (296)
.| .|++ +.-++...+... .++ +.+.+.|+| ||++.+..
T Consensus 94 ~f-~vv~-n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~~ 145 (245)
T 1yub_A 94 RY-KIVG-NIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLLL 145 (245)
T ss_dssp EE-EEEE-ECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHHT
T ss_pred Cc-EEEE-eCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhhh
Confidence 36 3333 222222222111 223 668889999 88876654
No 240
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.80 E-value=7.1e-09 Score=94.92 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=77.6
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC-ccceeEeh
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS-PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p-~~D~v~~~ 196 (296)
..++.+|||+|||+|..+.++++..++ .+++++|+ +..++.+++ ...++.++.+|..+ + .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 567789999999999999999998654 68999999 888877765 34579999999876 2 23 49999872
Q ss_pred h------hhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 197 W------ILH-------DWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 197 ~------vlh-------~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
- ++. .|..++ ..++|+++.+.|+| ||+|+......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeec
Confidence 1 222 122211 13789999999999 88887765443
No 241
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.80 E-value=3.8e-09 Score=93.77 Aligned_cols=99 Identities=11% Similarity=0.166 Sum_probs=79.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCC-----CeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCC--CccceeEehh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPK-----LECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAI--SPADAVLLKW 197 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~--p~~D~v~~~~ 197 (296)
+..+|||+|||+|.++..+++..+. .+++++|+ +.+++.|+. ...++++..+|.+.+. ..||+|++.-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999988764 68999999 899888875 2237899999998843 3599999987
Q ss_pred hhccCCchHH----------------HHHHHHHHHhcccCCCCcEEEEEe
Q 022515 198 ILHDWNDEEC----------------VKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 198 vlh~~~d~~~----------------~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.++.++.++. ..+++++.+.|+| ||+++++.
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~ 256 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLV 256 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEE
Confidence 7666654332 2589999999999 88887766
No 242
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.79 E-value=2.3e-08 Score=92.42 Aligned_cols=103 Identities=16% Similarity=0.238 Sum_probs=79.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC-ccceeEeh--
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS-PADAVLLK-- 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p-~~D~v~~~-- 196 (296)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ...++.++.+|..+ + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 479999999 888887765 34579999999987 3 33 49999971
Q ss_pred ----hhhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 197 ----WILH-------DWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 197 ----~vlh-------~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
.+++ +|..++ ..++|+++.+.|+| ||+|+.......
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~~ 250 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTLN 250 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccCC
Confidence 2333 233222 24789999999999 888887765443
No 243
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.73 E-value=8.6e-09 Score=92.85 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=72.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCC-CeeEEeccCCC--C-C---C-cccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLA-NLKYVGGDMFE--A-I---S-PADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-ri~~~~~D~~~--~-~---p-~~D~v 193 (296)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++ ..+ +++|+.+|.++ + . + .||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456799999999999999999863 348999999 999988876 233 89999999876 2 1 2 59999
Q ss_pred Eehhhh-----ccCCc--hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 194 LLKWIL-----HDWND--EECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 194 ~~~~vl-----h~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
++.-.. ++..+ +...++++.+.+.|+| ||.+++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 983211 12221 2334678889999999 77766654
No 244
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.73 E-value=5.7e-08 Score=88.85 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=82.5
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC-----C--ccceeE
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI-----S--PADAVL 194 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~-----p--~~D~v~ 194 (296)
..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ...+++|+.+|+.+.. + .||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 456679999999999999999987 679999999 999988875 2358999999998732 1 499999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY 274 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~ 274 (296)
+ +-|...+..+++.+.+ ++| ++.+++... |. |...-...|.+
T Consensus 362 ~-----dPPr~g~~~~~~~l~~-~~p---~~ivyvsc~---------p~--------------------tlard~~~l~~ 403 (433)
T 1uwv_A 362 L-----DPARAGAAGVMQQIIK-LEP---IRIVYVSCN---------PA--------------------TLARDSEALLK 403 (433)
T ss_dssp E-----CCCTTCCHHHHHHHHH-HCC---SEEEEEESC---------HH--------------------HHHHHHHHHHH
T ss_pred E-----CCCCccHHHHHHHHHh-cCC---CeEEEEECC---------hH--------------------HHHhhHHHHHH
Confidence 8 3333223345655543 677 555544221 00 11112345677
Q ss_pred cCCceeEEEEcC
Q 022515 275 AGFSDYKIIPIL 286 (296)
Q Consensus 275 aGf~~~~~~~~~ 286 (296)
.||+..++.++.
T Consensus 404 ~Gy~~~~~~~~d 415 (433)
T 1uwv_A 404 AGYTIARLAMLD 415 (433)
T ss_dssp TTCEEEEEEEEC
T ss_pred CCcEEEEEEEec
Confidence 899998887764
No 245
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.72 E-value=8.9e-09 Score=92.71 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=74.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC---C---C-ccceeEeh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA---I---S-PADAVLLK 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~---~---p-~~D~v~~~ 196 (296)
++.+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ..++++++.+|.++. . + .||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 668999999 999988876 234499999998772 1 2 59999983
Q ss_pred hhhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 197 WILHDWND-------EECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 197 ~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
---+..+. .....+++++.+.|+| ||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence 21111110 3346789999999999 888777654
No 246
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.72 E-value=1.2e-08 Score=92.37 Aligned_cols=98 Identities=10% Similarity=0.018 Sum_probs=74.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------C-CCCeeEEeccCCCC-------CCcccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------D-LANLKYVGGDMFEA-------ISPADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~ri~~~~~D~~~~-------~p~~D~v 193 (296)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++ . .++++++.+|+++. ...||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 456899999999999999999874 458999999 899988876 2 23899999998872 1259999
Q ss_pred Eehhhh--------ccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 194 LLKWIL--------HDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 194 ~~~~vl--------h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
++.-.. +.. ......++.++.+.|+| ||.+++..
T Consensus 298 i~dpP~~~~~~~~~~~~-~~~~~~~l~~~~~~Lkp---gG~l~~~~ 339 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGA-CRGYKDINMLAIQLLNE---GGILLTFS 339 (396)
T ss_dssp EECCSSTTTCSSSSSCC-CTHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhHHHHH-HHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 984211 111 13456889999999999 77777655
No 247
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.72 E-value=1.5e-08 Score=89.60 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=75.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCccceeEehhhhcc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISPADAVLLKWILHD 201 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~ 201 (296)
.++.+|||+|||+|.++.. ++ ...+++++|+ +.+++.+++ ..++++++.+|.++....||+|++.-
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dp---- 266 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNL---- 266 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECC----
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECC----
Confidence 4678999999999999998 76 4779999999 999988876 34689999999988445699999842
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
| .....+++.+.+.|+| ||.+++.+...
T Consensus 267 -P-~~~~~~l~~~~~~L~~---gG~l~~~~~~~ 294 (336)
T 2yx1_A 267 -P-KFAHKFIDKALDIVEE---GGVIHYYTIGK 294 (336)
T ss_dssp -T-TTGGGGHHHHHHHEEE---EEEEEEEEEES
T ss_pred -c-HhHHHHHHHHHHHcCC---CCEEEEEEeec
Confidence 1 1123789999999999 88888777543
No 248
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.69 E-value=3.2e-08 Score=85.63 Aligned_cols=77 Identities=12% Similarity=0.231 Sum_probs=63.8
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCc--
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISP-- 189 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~-- 189 (296)
...+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..++++++.+|+.+ +++.
T Consensus 39 ~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 39 VNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred HHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence 455666665 667789999999999999999998 578999999 999988876 35789999999998 6664
Q ss_pred cceeEehh
Q 022515 190 ADAVLLKW 197 (296)
Q Consensus 190 ~D~v~~~~ 197 (296)
||+|+.+-
T Consensus 115 fD~Iv~Nl 122 (295)
T 3gru_A 115 FNKVVANL 122 (295)
T ss_dssp CSEEEEEC
T ss_pred ccEEEEeC
Confidence 99998653
No 249
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.67 E-value=4.7e-08 Score=88.14 Aligned_cols=113 Identities=9% Similarity=-0.011 Sum_probs=80.8
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK--------------------------------------LECT 158 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~ 158 (296)
+..++.... +.+..+|||.+||+|.++++.+....+ .+++
T Consensus 190 Aa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 190 AAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 344555555 567789999999999999998875433 5699
Q ss_pred eccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhh--hccCCchHHHHHHHHHHHhcccCCCCcEE
Q 022515 159 CFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWI--LHDWNDEECVKILKKCKEAITSDGKKGKV 227 (296)
Q Consensus 159 ~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~v--lh~~~d~~~~~iL~~~~~aL~p~~~gG~l 227 (296)
++|+ +.+++.|++ ..++|+++.+|+.+ +.+ .||+|+++=- ...-..++...+.+.+.+.|++ -+|+++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~ 346 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSV 346 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEE
Confidence 9999 999998876 45689999999998 444 5999998622 1111123445666766666665 248888
Q ss_pred EEEee
Q 022515 228 IIIDM 232 (296)
Q Consensus 228 li~e~ 232 (296)
+|+..
T Consensus 347 ~iit~ 351 (393)
T 3k0b_A 347 YVLTS 351 (393)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88764
No 250
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.66 E-value=2.3e-08 Score=90.43 Aligned_cols=99 Identities=17% Similarity=0.108 Sum_probs=75.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC-------CCccceeEe
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA-------ISPADAVLL 195 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~-------~p~~D~v~~ 195 (296)
++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++ ..++++++.+|+++. ...||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6789999999999999999986 3458999999 899988876 223899999998762 125999998
Q ss_pred hhhhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 196 KWILHDWND-------EECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 196 ~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.-..+..+. .....+++++.+.|+| ||.+++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 421111111 3456789999999999 888777664
No 251
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.65 E-value=1.3e-07 Score=84.85 Aligned_cols=114 Identities=14% Similarity=0.045 Sum_probs=83.3
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC--------------------------------------CeE
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK--------------------------------------LEC 157 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~--------------------------------------~~~ 157 (296)
++..++.... +.+...|+|.+||+|.++++.+....+ .++
T Consensus 182 LAaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 182 MAAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 3444555555 567789999999999999998875433 569
Q ss_pred Eeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhh--hccCCchHHHHHHHHHHHhcccCCCCcE
Q 022515 158 TCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWI--LHDWNDEECVKILKKCKEAITSDGKKGK 226 (296)
Q Consensus 158 ~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~v--lh~~~d~~~~~iL~~~~~aL~p~~~gG~ 226 (296)
+++|+ +.+++.|++ ..++|++..+|+.+ +.+ .||+|+++=- ...-..++...+.+.+.+.|++ -+|++
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~ 338 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWS 338 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcE
Confidence 99999 999988876 45689999999998 444 5999998522 1111234566777778788875 34888
Q ss_pred EEEEee
Q 022515 227 VIIIDM 232 (296)
Q Consensus 227 lli~e~ 232 (296)
++|+..
T Consensus 339 ~~iit~ 344 (384)
T 3ldg_A 339 QFILTN 344 (384)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 888764
No 252
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.64 E-value=4.8e-07 Score=80.64 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=94.1
Q ss_pred CCEEEEecCCchHHHHHH--------HHHC-------CCCeEEeccchh-H-------hhccCC----------CCCC--
Q 022515 131 LNSLVDVGGGIGTAAKAI--------AKAF-------PKLECTCFDLPH-V-------VNGLDS----------DLAN-- 175 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l--------~~~~-------p~~~~~~~D~~~-~-------~~~a~~----------~~~r-- 175 (296)
..+|+|+|||+|..+..+ .+++ |..+++.-|+|. . +...++ ...+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 579999999999999877 2333 788999999853 2 122211 0111
Q ss_pred -eeEEeccCCC-CCC--ccceeEehhhhccCCch------------------------------------HHHHHHHHHH
Q 022515 176 -LKYVGGDMFE-AIS--PADAVLLKWILHDWNDE------------------------------------ECVKILKKCK 215 (296)
Q Consensus 176 -i~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~------------------------------------~~~~iL~~~~ 215 (296)
+.-++|.|.. .+| .+|+|+++.+||..++. +...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3336778887 566 49999999999976621 3345799999
Q ss_pred HhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhh-hh----h-hhhh-----------cC--ccccCHHHHHHHHH-hc
Q 022515 216 EAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFF-DM----L-MMVL-----------LT--GTERDEKEWTKLFT-YA 275 (296)
Q Consensus 216 ~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~----~-~~~~-----------~~--g~~rt~~e~~~ll~-~a 275 (296)
+.|+| ||++++.-...++...... ......+ +. + -++. ++ -..++.+|++++++ +.
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~-~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~ 288 (374)
T 3b5i_A 213 AEVKR---GGAMFLVCLGRTSVDPTDQ-GGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANG 288 (374)
T ss_dssp HHEEE---EEEEEEEEEECCCSSTTCC-HHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHC
T ss_pred HHhCC---CCEEEEEEecCCCCccccc-cchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcC
Confidence 99999 8888877665544211100 0000111 11 1 0111 11 12358999999998 58
Q ss_pred CCceeEEEE
Q 022515 276 GFSDYKIIP 284 (296)
Q Consensus 276 Gf~~~~~~~ 284 (296)
||++..+..
T Consensus 289 ~F~I~~le~ 297 (374)
T 3b5i_A 289 SFAIDKLVV 297 (374)
T ss_dssp SEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 999877643
No 253
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.63 E-value=7.1e-08 Score=86.91 Aligned_cols=99 Identities=15% Similarity=0.111 Sum_probs=71.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCC---CC-ccceeEehhhh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEA---IS-PADAVLLKWIL 199 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~---~p-~~D~v~~~~vl 199 (296)
.++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..-..++..+|.++. .+ .||+|++.-..
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 34789999999999999999987 456999999 999988876 111134668998772 22 49999984221
Q ss_pred ccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 200 HDWND-------EECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 200 h~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
..... ..-.++++.+.+.|+| ||.++++..
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~ 327 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSC 327 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence 11111 1235789999999999 888876664
No 254
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.59 E-value=5e-08 Score=84.66 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=64.3
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-C--C
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-A--I 187 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~--~ 187 (296)
+...+++.+. ..++.+|||+|||+|.++..+++++|+.+++++|. +.+++.|++ ..++++++.+|+.+ + .
T Consensus 14 Ll~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l 91 (301)
T 1m6y_A 14 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 91 (301)
T ss_dssp THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred HHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 3455666655 56778999999999999999999999889999999 999988876 23799999999876 3 1
Q ss_pred -----CccceeEeh
Q 022515 188 -----SPADAVLLK 196 (296)
Q Consensus 188 -----p~~D~v~~~ 196 (296)
..||.|++.
T Consensus 92 ~~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 92 KTLGIEKVDGILMD 105 (301)
T ss_dssp HHTTCSCEEEEEEE
T ss_pred HhcCCCCCCEEEEc
Confidence 358998873
No 255
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.57 E-value=2.1e-07 Score=78.69 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=67.6
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCCc-c-c
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AISP-A-D 191 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p~-~-D 191 (296)
...+++.+. ..++.+|||||||+|.++..++++ +..+++++|+ +.+++.+++ ...+++++.+|+.+ +++. + +
T Consensus 20 ~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 96 (249)
T 3ftd_A 20 LKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE 96 (249)
T ss_dssp HHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred HHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence 345566655 567789999999999999999987 4579999999 999988875 35689999999998 6653 2 3
Q ss_pred eeEehhhhccCCchHHHHHHHHHHHh
Q 022515 192 AVLLKWILHDWNDEECVKILKKCKEA 217 (296)
Q Consensus 192 ~v~~~~vlh~~~d~~~~~iL~~~~~a 217 (296)
.+++.+.-++.. ..++.++.+.
T Consensus 97 ~~vv~NlPy~i~----~~il~~ll~~ 118 (249)
T 3ftd_A 97 LKVVGNLPYNVA----SLIIENTVYN 118 (249)
T ss_dssp EEEEEECCTTTH----HHHHHHHHHT
T ss_pred cEEEEECchhcc----HHHHHHHHhc
Confidence 455555444333 3445555443
No 256
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.57 E-value=9.2e-08 Score=86.03 Aligned_cols=114 Identities=13% Similarity=0.062 Sum_probs=81.3
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC--------------------------------------CeE
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK--------------------------------------LEC 157 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~--------------------------------------~~~ 157 (296)
++..++.... +.+..+|||.+||+|.++++.+....+ .++
T Consensus 183 lAa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 183 LAAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 3444555555 567789999999999999998876322 579
Q ss_pred Eeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhhcc-CC-chHHHHHHHHHHHhcccCCCCcE
Q 022515 158 TCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWILHD-WN-DEECVKILKKCKEAITSDGKKGK 226 (296)
Q Consensus 158 ~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~p~~~gG~ 226 (296)
+++|+ +.+++.|++ ..++|+|..+|+.+ +.+ .||+|+++=-... +. .++...+.+.+.+.|++ -+|++
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~ 339 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWS 339 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCE
Confidence 99999 999998876 34589999999998 444 5999998432211 11 23455677777777765 23788
Q ss_pred EEEEee
Q 022515 227 VIIIDM 232 (296)
Q Consensus 227 lli~e~ 232 (296)
++++..
T Consensus 340 ~~iit~ 345 (385)
T 3ldu_A 340 YYLITS 345 (385)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 887753
No 257
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.54 E-value=6.4e-08 Score=88.83 Aligned_cols=109 Identities=15% Similarity=0.088 Sum_probs=79.7
Q ss_pred HHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-------------CCCeEEeccc-hhHhhccCC-----CCC--Cee
Q 022515 119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-------------PKLECTCFDL-PHVVNGLDS-----DLA--NLK 177 (296)
Q Consensus 119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~-----~~~--ri~ 177 (296)
.+++.+. .....+|+|.|||+|.++..+++.. +..+++++|+ +.++..|+. ... +++
T Consensus 162 ~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 162 AMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 3444333 3456799999999999999988753 4568999999 888887764 122 788
Q ss_pred EEeccCCC-CCC-ccceeEehhhhccCCch---------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 178 YVGGDMFE-AIS-PADAVLLKWILHDWNDE---------------ECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 178 ~~~~D~~~-~~p-~~D~v~~~~vlh~~~d~---------------~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+..+|.+. +.. .||+|+++-.++..... ....+++++.+.|+| ||++.++-+
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p 308 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 308 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence 99999988 433 69999997544432111 124789999999999 999888763
No 258
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.54 E-value=8.9e-08 Score=84.49 Aligned_cols=98 Identities=16% Similarity=0.109 Sum_probs=70.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------C----CCeeEEeccCCC--C-----C
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------L----ANLKYVGGDMFE--A-----I 187 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~----~ri~~~~~D~~~--~-----~ 187 (296)
.++.+|||||||+|..+.++++..+ .+++.+|+ |.+++.|++ . . +|++++.+|.++ . .
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 3568999999999999999988765 78999999 999998876 1 1 289999999887 2 1
Q ss_pred CccceeEehhhh-ccCCch---HHHHHHHHH----HHhcccCCCCcEEEEE
Q 022515 188 SPADAVLLKWIL-HDWNDE---ECVKILKKC----KEAITSDGKKGKVIII 230 (296)
Q Consensus 188 p~~D~v~~~~vl-h~~~d~---~~~~iL~~~----~~aL~p~~~gG~lli~ 230 (296)
..||+|++.-.- ..-..+ ...++++.+ .++|+| ||.+++.
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~p---gGilv~q 313 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 313 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCC---CcEEEEE
Confidence 259999985321 100001 224566666 899999 6655443
No 259
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.54 E-value=1.6e-07 Score=80.34 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=66.5
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC---cc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS---PA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p---~~ 190 (296)
..+++... ..++ +|||||||+|.++..++++. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 44555555 5566 99999999999999999984 68999999 999988876 44789999999998 655 35
Q ss_pred ceeEehhhhccCCchHHHHHHHH
Q 022515 191 DAVLLKWILHDWNDEECVKILKK 213 (296)
Q Consensus 191 D~v~~~~vlh~~~d~~~~~iL~~ 213 (296)
|.|+. +.-++.+.+-..++|..
T Consensus 112 ~~iv~-NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLVA-NLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEE-EECSSCCHHHHHHHHHH
T ss_pred cEEEe-cCcccccHHHHHHHhcC
Confidence 66554 44455565544444543
No 260
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.52 E-value=1.4e-07 Score=81.11 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=75.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------CCCCeeEEeccCCCC---C-Ccccee
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------DLANLKYVGGDMFEA---I-SPADAV 193 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~D~~~~---~-p~~D~v 193 (296)
+++++||=||||.|..+.++++..|..+++++|+ |.|++.+++ ...|++++.+|.++- . ..||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999998877789999999 999998876 368999999998872 2 249999
Q ss_pred EehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 194 LLKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 194 ~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
++-..=-.-+.+ -..++++.++++|+| ||.++.-
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q 197 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQ 197 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEE---EEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCC---CCEEEEe
Confidence 984321000110 124789999999999 6666554
No 261
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.50 E-value=2.7e-07 Score=83.96 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=67.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC-ccceeEehhhhcc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS-PADAVLLKWILHD 201 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p-~~D~v~~~~vlh~ 201 (296)
.+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ..+ ++|+.+|+.+..+ .||+|++.-
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dP---- 361 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDP---- 361 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECC----
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcC----
Confidence 45679999999999999999886 568999999 999988876 234 9999999988433 699999832
Q ss_pred CCchHH-HHHHHHHHHhcccCCCCcEEEEE
Q 022515 202 WNDEEC-VKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 202 ~~d~~~-~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
|.... ..+++.+. .|+| ||.+++.
T Consensus 362 -Pr~g~~~~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 362 -PRAGLHPRLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp -CTTCSCHHHHHHHH-HHCC---SEEEEEE
T ss_pred -CccchHHHHHHHHH-hcCC---CcEEEEE
Confidence 22111 13455554 4898 7777664
No 262
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.50 E-value=5.9e-07 Score=80.16 Aligned_cols=150 Identities=13% Similarity=0.150 Sum_probs=91.8
Q ss_pred CCEEEEecCCchHHHHHHHHH-----------------CCCCeEEeccch-----------hH-hhccCC---CCCCeeE
Q 022515 131 LNSLVDVGGGIGTAAKAIAKA-----------------FPKLECTCFDLP-----------HV-VNGLDS---DLANLKY 178 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~~-~~~a~~---~~~ri~~ 178 (296)
..+|+|+||++|..+..+... .|.++++.-|+| +. .+..++ ...+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999999888776 477889999987 11 111111 1112233
Q ss_pred ---EeccCCC-CCC--ccceeEehhhhccCCchH-------------------------H------------HHHHHHHH
Q 022515 179 ---VGGDMFE-AIS--PADAVLLKWILHDWNDEE-------------------------C------------VKILKKCK 215 (296)
Q Consensus 179 ---~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~-------------------------~------------~~iL~~~~ 215 (296)
++|.|+. .+| .+|+++++.+||..++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777 566 499999999999755321 1 12378889
Q ss_pred HhcccCCCCcEEEEEeeeeCCCC-CCCch-hhhhhhhhhhhh--------hhc--CccccCHHHHHHHHHhcC-CceeEE
Q 022515 216 EAITSDGKKGKVIIIDMIRENKK-GDDKS-IETQLFFDMLMM--------VLL--TGTERDEKEWTKLFTYAG-FSDYKI 282 (296)
Q Consensus 216 ~aL~p~~~gG~lli~e~~~~~~~-~~~~~-~~~~~~~~~~~~--------~~~--~g~~rt~~e~~~ll~~aG-f~~~~~ 282 (296)
+.|+| ||++++.-...+... ..... .....+.++..- -.+ .-..++.+|++++++++| |++..+
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 99999 888887766554431 11000 011122221100 001 122358999999999985 777665
Q ss_pred E
Q 022515 283 I 283 (296)
Q Consensus 283 ~ 283 (296)
.
T Consensus 290 e 290 (384)
T 2efj_A 290 E 290 (384)
T ss_dssp E
T ss_pred E
Confidence 4
No 263
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.46 E-value=4.2e-07 Score=77.03 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=55.9
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS 188 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p 188 (296)
...+++.+. ..++.+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 18 LQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 345555555 5677899999999999999999874 68999999 999998876 34799999999998 543
No 264
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.43 E-value=2.3e-07 Score=89.61 Aligned_cols=99 Identities=9% Similarity=0.124 Sum_probs=73.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CC-CCeeEEeccCCCC---C-CccceeEeh
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DL-ANLKYVGGDMFEA---I-SPADAVLLK 196 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~D~~~~---~-p~~D~v~~~ 196 (296)
.++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++ .. ++++++.+|.++. . ..||+|++.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred cCCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 356799999999999999988853 346999999 899988876 23 5899999999872 2 259999983
Q ss_pred hhh--------ccCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 197 WIL--------HDWN-DEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 197 ~vl--------h~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
--- +.+. ...-.++++++.+.|+| ||.+++..
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~ 657 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSN 657 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 211 0111 12446789999999999 78777443
No 265
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.42 E-value=4.7e-07 Score=85.66 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCCEEEEecCCchHHHHHHHH---HC-CCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAK---AF-PKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKW 197 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~---~~-p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~ 197 (296)
+...|+|||||+|-++...++ +. -.+++..++-.+++..+++ ..++|+++.+|+.+ ..| ++|+|++-+
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEw 436 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSEL 436 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEc
Confidence 345899999999998544433 22 2347889998456656554 78999999999999 777 599999876
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEE
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKV 227 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~l 227 (296)
.=...-.|...++|-...+.||| ||.+
T Consensus 437 MG~fLl~E~mlevL~Ardr~LKP---gGim 463 (637)
T 4gqb_A 437 LGSFADNELSPECLDGAQHFLKD---DGVS 463 (637)
T ss_dssp CBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred CcccccccCCHHHHHHHHHhcCC---CcEE
Confidence 65555556666788888899999 6654
No 266
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.39 E-value=3.3e-06 Score=74.27 Aligned_cols=144 Identities=15% Similarity=0.153 Sum_probs=106.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC----C----------------------CCCeeEEecc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS----D----------------------LANLKYVGGD 182 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~----------------------~~ri~~~~~D 182 (296)
.+...||.+|||.......+...+|+++++-+|.|++++.-++ . .++..+++.|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4568999999999999999999888999999999998876543 1 3789999999
Q ss_pred CCC-CC----------C-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhh
Q 022515 183 MFE-AI----------S-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFF 250 (296)
Q Consensus 183 ~~~-~~----------p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~ 250 (296)
+.+ ++ + ...++++--+|++++.+++.++|+.+.+.. | +|.+++.|.+.+..... ++... ...
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~-~fg~~-m~~ 249 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPND-RFGAI-MQS 249 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTC-CHHHH-HHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcc-hHHHH-HHH
Confidence 987 32 1 257888899999999999999999999987 5 68888999887733222 22210 001
Q ss_pred hhhh-h-hhc--CccccCHHHHHHHHHhcCCc
Q 022515 251 DMLM-M-VLL--TGTERDEKEWTKLFTYAGFS 278 (296)
Q Consensus 251 ~~~~-~-~~~--~g~~rt~~e~~~ll~~aGf~ 278 (296)
.+.. . ... .....+.++..+.|.++||+
T Consensus 250 ~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 250 NLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred HhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1111 0 001 12345889999999999997
No 267
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.39 E-value=9.9e-08 Score=81.97 Aligned_cols=71 Identities=14% Similarity=0.266 Sum_probs=56.5
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC--CeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCCc
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK--LECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AISP 189 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p~ 189 (296)
...+++.+. ..++.+|||||||+|.++..|+++.+. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++.
T Consensus 31 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 31 IDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 344555555 567789999999999999999998653 45999999 999998874 24689999999998 6553
No 268
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.36 E-value=1.6e-06 Score=65.93 Aligned_cols=83 Identities=20% Similarity=0.188 Sum_probs=62.2
Q ss_pred CCCCEEEEecCCch-HHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCC----ccceeEehhhhccC
Q 022515 129 EGLNSLVDVGGGIG-TAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAIS----PADAVLLKWILHDW 202 (296)
Q Consensus 129 ~~~~~vLDvGgG~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p----~~D~v~~~~vlh~~ 202 (296)
..+.+|||||||.| ..+..|++.. +..++++|+ |..++ ++..|+|++.. +||+|+..+
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~----------~v~dDiF~P~~~~Y~~~DLIYsir----- 97 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG----------IVRDDITSPRMEIYRGAALIYSIR----- 97 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT----------EECCCSSSCCHHHHTTEEEEEEES-----
T ss_pred CCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc----------eEEccCCCCcccccCCcCEEEEcC-----
Confidence 45679999999999 6888888743 788999998 66553 88999999643 699998865
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
|..+...-+.++++.. |.-++|.-.
T Consensus 98 PP~El~~~i~~lA~~v-----~adliI~pL 122 (153)
T 2k4m_A 98 PPAEIHSSLMRVADAV-----GARLIIKPL 122 (153)
T ss_dssp CCTTTHHHHHHHHHHH-----TCEEEEECB
T ss_pred CCHHHHHHHHHHHHHc-----CCCEEEEcC
Confidence 5666666777777766 456655543
No 269
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.35 E-value=3.9e-07 Score=77.25 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=82.9
Q ss_pred CCCEEEEecCCchHHHHHHHHH-------CCC-----CeEEeccc-h---hHhh-----------ccCC-----------
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKA-------FPK-----LECTCFDL-P---HVVN-----------GLDS----------- 171 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~-----------~a~~----------- 171 (296)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+. .+++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999999887765 674 68999997 6 2222 1111
Q ss_pred --------CCCCeeEEeccCCC--C-CC-----ccceeEehh-hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 172 --------DLANLKYVGGDMFE--A-IS-----PADAVLLKW-ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 172 --------~~~ri~~~~~D~~~--~-~p-----~~D~v~~~~-vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
...++++..||..+ + .+ .||+|++-- .-...|+--...+|+.+++.|+| ||+++...
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tys--- 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFT--- 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESC---
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC---CcEEEEEe---
Confidence 12457788999866 2 22 489999842 11101110124789999999999 77765311
Q ss_pred CCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515 235 ENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY 295 (296)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 295 (296)
....+++.|.++||++.++...+.-..++.++
T Consensus 214 -----------------------------aa~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~ 245 (257)
T 2qy6_A 214 -----------------------------SAGFVRRGLQEAGFTMQKRKGFGRKREMLCGV 245 (257)
T ss_dssp -----------------------------CBHHHHHHHHHHTEEEEEECCSTTCCCEEEEE
T ss_pred -----------------------------CCHHHHHHHHHCCCEEEeCCCCCCCCceEEEE
Confidence 01246678899999977654444444555543
No 270
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.32 E-value=3.2e-07 Score=77.67 Aligned_cols=84 Identities=11% Similarity=0.119 Sum_probs=58.9
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--CCCeeEEeccCCC-CCCc-c
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--LANLKYVGGDMFE-AISP-A 190 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--~~ri~~~~~D~~~-~~p~-~ 190 (296)
...+++.+. ..++.+|||||||+|.++. +. +.+..+++++|+ +.+++.+++ . .++++++.+|+.+ +++. +
T Consensus 10 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 10 IDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence 345555555 5667899999999999999 54 544444999999 999998876 2 2589999999988 5542 2
Q ss_pred -----ceeEehhhhccCCc
Q 022515 191 -----DAVLLKWILHDWND 204 (296)
Q Consensus 191 -----D~v~~~~vlh~~~d 204 (296)
+.+++++.-++.+.
T Consensus 86 ~~~~~~~~vvsNlPY~i~~ 104 (252)
T 1qyr_A 86 EKMGQPLRVFGNLPYNIST 104 (252)
T ss_dssp HHHTSCEEEEEECCTTTHH
T ss_pred cccCCceEEEECCCCCccH
Confidence 34555554444433
No 271
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.27 E-value=2e-06 Score=83.10 Aligned_cols=111 Identities=11% Similarity=0.001 Sum_probs=76.2
Q ss_pred hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHH------------------------------------------CCC
Q 022515 117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA------------------------------------------FPK 154 (296)
Q Consensus 117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~------------------------------------------~p~ 154 (296)
+..++.... +.+..+|||.+||+|.++++.+.. .+.
T Consensus 179 Aa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 179 AAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 344555555 456789999999999999988764 233
Q ss_pred CeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC----ccceeEehhhh--ccCCchHHHHHHHHHHHh---
Q 022515 155 LECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS----PADAVLLKWIL--HDWNDEECVKILKKCKEA--- 217 (296)
Q Consensus 155 ~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p----~~D~v~~~~vl--h~~~d~~~~~iL~~~~~a--- 217 (296)
.+++++|+ +.+++.|++ ..++|+|..+|+.+ ..| .+|+|+++=-. ..-..++...+.+.+.+.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 68999999 999988876 45679999999987 322 58999985211 111223344455544444
Q ss_pred cccCCCCcEEEEEee
Q 022515 218 ITSDGKKGKVIIIDM 232 (296)
Q Consensus 218 L~p~~~gG~lli~e~ 232 (296)
+.| ||+++|+..
T Consensus 337 ~~~---g~~~~ilt~ 348 (703)
T 3v97_A 337 QFG---GWNLSLFSA 348 (703)
T ss_dssp HCT---TCEEEEEES
T ss_pred hCC---CCeEEEEeC
Confidence 456 899998864
No 272
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.26 E-value=5.5e-06 Score=73.29 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=91.8
Q ss_pred CCCEEEEecCCchHHHHHHHHH----------------CCCCeEEeccch-hHhhccCC-CC-----CCeeE---EeccC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKA----------------FPKLECTCFDLP-HVVNGLDS-DL-----ANLKY---VGGDM 183 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~----------------~p~~~~~~~D~~-~~~~~a~~-~~-----~ri~~---~~~D~ 183 (296)
...+|+|+||++|..+..+... .|..+++.-|+| ......-+ +. .+-.| ++|.|
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4578999999999777654333 467788999985 33332221 11 12233 56788
Q ss_pred CC-CCC--ccceeEehhhhccCCch-------------------------------HHHHHHHHHHHhcccCCCCcEEEE
Q 022515 184 FE-AIS--PADAVLLKWILHDWNDE-------------------------------ECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 184 ~~-~~p--~~D~v~~~~vlh~~~d~-------------------------------~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
+. .+| .+|+++++..||..++. +-..+|+..++.|+| ||++++
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mvl 207 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEEE
Confidence 87 566 49999999999976531 224569999999999 999887
Q ss_pred EeeeeCCCCCCC-----chhhh-hhhhhhhhhh--------hc--CccccCHHHHHHHHHhcCC-ceeEE
Q 022515 230 IDMIRENKKGDD-----KSIET-QLFFDMLMMV--------LL--TGTERDEKEWTKLFTYAGF-SDYKI 282 (296)
Q Consensus 230 ~e~~~~~~~~~~-----~~~~~-~~~~~~~~~~--------~~--~g~~rt~~e~~~ll~~aGf-~~~~~ 282 (296)
.-...++..... .+... ..+.++-.-. .+ .-..++.+|++++++++|. ++..+
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 776655432100 01001 1111111000 00 1134488999999999964 66554
No 273
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.24 E-value=1.1e-06 Score=74.57 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=55.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-h-------hHhhccCC------CCCCeeEEeccCCC--C-C---
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-P-------HVVNGLDS------DLANLKYVGGDMFE--A-I--- 187 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~------~~~ri~~~~~D~~~--~-~--- 187 (296)
..++.+|||+|||+|..+..+++. +.+++++|+ | .+++.|++ ..+|++++.+|..+ + +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 445679999999999999999986 579999999 8 78877764 24679999999876 2 3
Q ss_pred -CccceeEehhhhc
Q 022515 188 -SPADAVLLKWILH 200 (296)
Q Consensus 188 -p~~D~v~~~~vlh 200 (296)
..||+|++.-..+
T Consensus 159 ~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 159 QGKPDIVYLDPMYP 172 (258)
T ss_dssp HCCCSEEEECCCC-
T ss_pred CCCccEEEECCCCC
Confidence 3599999854443
No 274
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.24 E-value=5.4e-07 Score=80.61 Aligned_cols=89 Identities=10% Similarity=0.141 Sum_probs=65.7
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC---C--------------
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA---I-------------- 187 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~---~-------------- 187 (296)
+.+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ..++++|+.+|..+- .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 468999999999999988875 358999999 999988875 236899999998651 1
Q ss_pred --CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 188 --SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 188 --p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
..||+|++. -|.. .+..++.+.|++ +|+++.+..
T Consensus 292 ~~~~fD~Vv~d-----PPr~---g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVD-----PPRS---GLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEEC-----CCTT---CCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEEC-----cCcc---ccHHHHHHHHhC---CCEEEEEEC
Confidence 158999872 2221 234456666777 788877653
No 275
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.23 E-value=1e-06 Score=78.97 Aligned_cols=93 Identities=11% Similarity=-0.001 Sum_probs=71.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----C---------------C-CCeeEEeccCCCC--
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----D---------------L-ANLKYVGGDMFEA-- 186 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~---------------~-~ri~~~~~D~~~~-- 186 (296)
++.+|||+|||+|..++.++++.+..+++++|+ +..++.+++ . . ++++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 467999999999999999999988889999999 888887765 2 2 2389999998762
Q ss_pred -CC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 187 -IS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 187 -~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.+ .||+|++.= .-....++..+.+.++| ||.+++..
T Consensus 127 ~~~~~fD~I~lDP------~~~~~~~l~~a~~~lk~---gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP------FGSPMEFLDTALRSAKR---RGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC------SSCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred hccCCCCEEEeCC------CCCHHHHHHHHHHhcCC---CCEEEEEe
Confidence 23 599999631 11124789999999999 88766654
No 276
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.23 E-value=2.9e-06 Score=71.61 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=63.3
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--ccceeEehhhhc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PADAVLLKWILH 200 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh 200 (296)
+++..+|||+|||+|.++...++..+..+++++|+ -........ ...++.....++.. .++ .+|+|++....+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn 151 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES 151 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence 67778999999999999998887765555666665 222111111 11133444444322 332 499999976544
Q ss_pred ---cCCch-HHHHHHHHHHHhcccCCCC-cEEEEEeeee
Q 022515 201 ---DWNDE-ECVKILKKCKEAITSDGKK-GKVIIIDMIR 234 (296)
Q Consensus 201 ---~~~d~-~~~~iL~~~~~aL~p~~~g-G~lli~e~~~ 234 (296)
++-|. ....+|+-+.+.|+| | |.+++ ..+.
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~-KVf~ 186 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV-KVLA 186 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESC
T ss_pred cCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE-EecC
Confidence 12222 334568999999999 8 77665 4433
No 277
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.17 E-value=4.7e-06 Score=72.55 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=55.7
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC-----CccceeE
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI-----SPADAVL 194 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~-----p~~D~v~ 194 (296)
..++.+|||+|||+|..+.++++.. +..+++++|+ +..++.+++ ...+++++.+|+.+ +. ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 5677899999999999999999874 5679999999 888887765 34679999999876 21 2489998
Q ss_pred e
Q 022515 195 L 195 (296)
Q Consensus 195 ~ 195 (296)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 7
No 278
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.16 E-value=1.3e-06 Score=82.85 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=68.5
Q ss_pred CCEEEEecCCchHHHHHHHHH----C---------CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC---
Q 022515 131 LNSLVDVGGGIGTAAKAIAKA----F---------PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI--- 187 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~----~---------p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~--- 187 (296)
...|||||||+|-++...+++ . ...+++++|. |..+...++ ..++|+++.+|+.+ ..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 468999999999997533222 1 2348999998 544433322 68999999999998 55
Q ss_pred ---C-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEE
Q 022515 188 ---S-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVI 228 (296)
Q Consensus 188 ---p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~ll 228 (296)
+ .+|+|++-+.=.....|-..+.|..+.+.|+| ||.++
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp---~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP---TTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---TCEEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---CcEEE
Confidence 4 59999987765544555566788888899999 77543
No 279
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=98.13 E-value=1.1e-06 Score=78.79 Aligned_cols=94 Identities=11% Similarity=-0.010 Sum_probs=72.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC------CCCC-eeEEeccCCC--C--CC-ccceeE
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS------DLAN-LKYVGGDMFE--A--IS-PADAVL 194 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~r-i~~~~~D~~~--~--~p-~~D~v~ 194 (296)
.++.+|||++||+|.+++.++.+.++ .+++.+|+ +..++.+++ ..++ ++++.+|.++ . .+ .||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 35679999999999999999998765 57999999 888888776 3455 9999999865 2 22 499999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+.= + .. ...++..+.+.|+| ||.|++..
T Consensus 131 lDP--~--g~--~~~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 131 LDP--F--GT--PVPFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp ECC--S--SC--CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECC--C--cC--HHHHHHHHHHHhCC---CCEEEEEe
Confidence 843 1 11 13588899999999 78666655
No 280
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.10 E-value=3.2e-06 Score=71.46 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=68.0
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCC-eeEEec-cCCC-CCCcc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLAN-LKYVGG-DMFE-AISPA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~r-i~~~~~-D~~~-~~p~~ 190 (296)
.++.+.+. +.+..+|||+|||.|.++...++..+-..++++|+ ..+...+.. ...+ +.+... |+.. +...+
T Consensus 80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 35556654 67888999999999999998887776667788887 443333321 1223 333333 4443 22359
Q ss_pred ceeEehhhhc----cCCchHHHHHHHHHHHhcccCCCC--cEEEE
Q 022515 191 DAVLLKWILH----DWNDEECVKILKKCKEAITSDGKK--GKVII 229 (296)
Q Consensus 191 D~v~~~~vlh----~~~d~~~~~iL~~~~~aL~p~~~g--G~lli 229 (296)
|+|++.-..+ ..+......+|+-+.+.|+| | |.+++
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~ 199 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI 199 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE
Confidence 9999966554 11122234568888899999 6 66554
No 281
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.97 E-value=9.8e-06 Score=75.97 Aligned_cols=100 Identities=10% Similarity=0.066 Sum_probs=72.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCC------------------CCeEEeccc-hhHhhccCC-----CCC-----CeeEE
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFP------------------KLECTCFDL-PHVVNGLDS-----DLA-----NLKYV 179 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~-----~~~-----ri~~~ 179 (296)
....+|+|.+||+|.++..+.+... ..+++++|+ +.++..|+. ..+ ++++.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 4567999999999999988876531 247999999 888887764 222 27899
Q ss_pred eccCCC-C---CCccceeEehhhhcc--CC----------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 180 GGDMFE-A---ISPADAVLLKWILHD--WN----------DEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 180 ~~D~~~-~---~p~~D~v~~~~vlh~--~~----------d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.+|.+. + .+.||+|+++=-... +. ......++.++.+.|+| ||++.++-
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~ 312 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVV 312 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEe
Confidence 999987 3 236999998533221 11 11224789999999999 99988875
No 282
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.88 E-value=1.1e-05 Score=71.54 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=70.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------------CCCCeeEEeccCCCC-------CC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------------DLANLKYVGGDMFEA-------IS 188 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~ri~~~~~D~~~~-------~p 188 (296)
++++||=||||.|..+.++++. |..+++.+|+ |.|++.+++ ..+|++++.+|..+- ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999874 5578999999 999998876 135789999997651 12
Q ss_pred ccceeEehhhhcc-CCc-------hHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 189 PADAVLLKWILHD-WND-------EECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 189 ~~D~v~~~~vlh~-~~d-------~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
.||+|++--.=.. -++ .-..++++.++++|+| ||.++.
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~ 329 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFT 329 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 4999998522110 011 1135788999999999 666544
No 283
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.83 E-value=7.2e-05 Score=66.02 Aligned_cols=95 Identities=11% Similarity=0.093 Sum_probs=67.1
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND 204 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d 204 (296)
+.++.++||+||++|.++..++++ +.+++++|..++-.... ..++|++..+|.+. ..+ ++|++++..+.+ .
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~-~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p 282 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLM-DTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---P 282 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHH-TTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---H
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhc-cCCCeEEEeCccccccCCCCCcCEEEEcCCCC---h
Confidence 568899999999999999999987 78999999744443333 56889999999998 332 499999976542 3
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.....++.+....... ++.|+.+.
T Consensus 283 ~~~~~l~~~wl~~~~~---~~aI~~lK 306 (375)
T 4auk_A 283 AKVAALMAQWLVNGWC---RETIFNLK 306 (375)
T ss_dssp HHHHHHHHHHHHTTSC---SEEEEEEE
T ss_pred HHhHHHHHHHHhcccc---ceEEEEEE
Confidence 3444555554444433 34444444
No 284
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.83 E-value=6.9e-05 Score=65.12 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=96.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccchhHhhccCC--------CCCCeeEEeccCCCCC------Cc----
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDLPHVVNGLDS--------DLANLKYVGGDMFEAI------SP---- 189 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~D~~~~~------p~---- 189 (296)
.+...||++|||-=.....+. .| +++++-+|.|.+++..++ ..++..++..|+.+.+ .+
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS 178 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence 355789999999988866654 24 478999999999987665 2678999999998631 11
Q ss_pred -cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhh--hhhh-hhh-hhh-----h-c
Q 022515 190 -ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET--QLFF-DML-MMV-----L-L 258 (296)
Q Consensus 190 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~--~~~~-~~~-~~~-----~-~ 258 (296)
.-++++-.+||++++++...+|+.+.+.+.| | ..+++|.+.++. . +... ..+. ... -.. . .
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~---g-s~l~~d~~~~~~--~--~~~~~~~~~~~~~~~~~g~~~~~~l~ 250 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---G-SRIAVETSPLHG--D--EWREQMQLRFRRVSDALGFEQAVDVQ 250 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---T-CEEEEECCCTTC--S--HHHHHHHHHHHHHHC-----------
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCC---C-eEEEEEecCCCC--c--chhHHHHHHHHHHHHHcCCcCCCCcc
Confidence 2367888899999999999999999999888 4 456667665433 1 1110 1111 000 000 0 0
Q ss_pred Cccc-cC-HHHHHHHHHhcCCcee
Q 022515 259 TGTE-RD-EKEWTKLFTYAGFSDY 280 (296)
Q Consensus 259 ~g~~-rt-~~e~~~ll~~aGf~~~ 280 (296)
+-.. ++ .++..++|.+.||+.+
T Consensus 251 ~~~~~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 251 ELIYHDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp CCTTCCTTCCCHHHHHTTTTEEEE
T ss_pred ccccCCCChHHHHHHHHHCcCccc
Confidence 1122 25 7899999999999987
No 285
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.80 E-value=6.4e-06 Score=74.16 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=53.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----C--C-CCeeEEeccCCCC--C---CccceeEe
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----D--L-ANLKYVGGDMFEA--I---SPADAVLL 195 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~-~ri~~~~~D~~~~--~---p~~D~v~~ 195 (296)
.++.+|||+|||+|..+..+++. ..+++++|+ +.+++.|++ . . ++++++.+|+.+. . ..||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34689999999999999988877 569999999 999988875 2 2 5899999999872 2 25999998
No 286
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.79 E-value=0.00032 Score=61.49 Aligned_cols=146 Identities=13% Similarity=0.210 Sum_probs=103.9
Q ss_pred CCCEEEEecCCchHHHHHHHHH-CCCCeEEeccchhHhhccCC----------------------------CCCCeeEEe
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDLPHVVNGLDS----------------------------DLANLKYVG 180 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~~----------------------------~~~ri~~~~ 180 (296)
+...||-+|||.=.....+... .++++++-+|.|++++.-++ ..++..+++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5679999999999999888775 36789999999998864221 157899999
Q ss_pred ccCCC-C-C---------C-c-cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhh
Q 022515 181 GDMFE-A-I---------S-P-ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQ 247 (296)
Q Consensus 181 ~D~~~-~-~---------p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~ 247 (296)
.|+.+ . + . . .-++++--+|.+++.+++..+|+.+.+...+ |.+++.|.+.+.+ ++..
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d----~fg~-- 239 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGD----RFGQ-- 239 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTS----HHHH--
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCC----HHHH--
Confidence 99986 1 1 1 1 3477888899999999999999999998764 7888889885432 2211
Q ss_pred hhh-hhhhhhh-cCc--cccCHHHHHHHHHhcCCceeEEEEc
Q 022515 248 LFF-DMLMMVL-LTG--TERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 248 ~~~-~~~~~~~-~~g--~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
.+. .+..... ..+ ...+.++..+.|.++||+.+++..+
T Consensus 240 ~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 240 IMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 111 1100000 011 2348899999999999999877664
No 287
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.77 E-value=0.00011 Score=59.66 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=63.6
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------C--CCCeeEEeccCCCC------------
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------D--LANLKYVGGDMFEA------------ 186 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~ri~~~~~D~~~~------------ 186 (296)
..+..+||+||+| ..++.+++ .++.+++.+|. ++..+.+++ . .++|+++.+|..+.
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 3456899999985 45555555 45789999998 888888765 3 67999999995421
Q ss_pred ------------C---CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 187 ------------I---SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 187 ------------~---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
. ..||+|++-.- . ....+..+.+.|+| ||.| |+|.+
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~------k-~~~~~~~~l~~l~~---GG~I-v~DNv 155 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGR------F-RVGCALATAFSITR---PVTL-LFDDY 155 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSS------S-HHHHHHHHHHHCSS---CEEE-EETTG
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCC------C-chhHHHHHHHhcCC---CeEE-EEeCC
Confidence 1 24999999541 1 12445556788998 6655 66653
No 288
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.75 E-value=3.4e-05 Score=65.51 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=61.7
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-C--C---
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-A--I--- 187 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~--~--- 187 (296)
+.+.+++.+. ..++..+||.+||.|..+..++++ +.+++++|. |.+++.+++ ..+|++++.+||.+ + .
T Consensus 10 Ll~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~ 85 (285)
T 1wg8_A 10 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 85 (285)
T ss_dssp THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHc
Confidence 4567777776 677889999999999999999998 779999999 999987765 22699999999976 2 1
Q ss_pred --CccceeEe
Q 022515 188 --SPADAVLL 195 (296)
Q Consensus 188 --p~~D~v~~ 195 (296)
..+|.|++
T Consensus 86 g~~~vDgIL~ 95 (285)
T 1wg8_A 86 GVERVDGILA 95 (285)
T ss_dssp TCSCEEEEEE
T ss_pred CCCCcCEEEe
Confidence 24787776
No 289
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.72 E-value=2.5e-05 Score=66.09 Aligned_cols=80 Identities=18% Similarity=0.237 Sum_probs=57.7
Q ss_pred HHHHHhcccccCCC--CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhh-------ccCC---C---C-CCeeEEe
Q 022515 118 SVMIHKCKDVFEGL--NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVN-------GLDS---D---L-ANLKYVG 180 (296)
Q Consensus 118 ~~~~~~~~~~~~~~--~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~-------~a~~---~---~-~ri~~~~ 180 (296)
..+.+.+. ..++ .+|||+|||+|..+..++.+ +.+++++|. |.++. .+++ . . +|++++.
T Consensus 76 e~l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~ 151 (258)
T 2oyr_A 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (258)
T ss_dssp SHHHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred HHHHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence 34445554 4555 79999999999999999998 568999999 76533 2221 1 1 6899999
Q ss_pred ccCCC---CCC-ccceeEehhhhcc
Q 022515 181 GDMFE---AIS-PADAVLLKWILHD 201 (296)
Q Consensus 181 ~D~~~---~~p-~~D~v~~~~vlh~ 201 (296)
+|..+ ..+ .||+|++.-..++
T Consensus 152 ~D~~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 152 ASSLTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp SCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred CCHHHHHHhCcccCCEEEEcCCCCC
Confidence 99875 233 5999999755543
No 290
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.71 E-value=6e-05 Score=64.13 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=62.9
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CC-CCeeEEec-cCCC-CCCccceeEehhhhc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DL-ANLKYVGG-DMFE-AISPADAVLLKWILH 200 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~-~ri~~~~~-D~~~-~~p~~D~v~~~~vlh 200 (296)
+.++.+|||+||++|.++..+++..+-..++++|+ ......... .. +-+.+..+ |++. ....+|+|++.-.-+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 56788999999999999999998765556778887 332222211 12 22334433 5444 223599999865443
Q ss_pred ----cCCchHHHHHHHHHHHhcccCCCC-cEEEE
Q 022515 201 ----DWNDEECVKILKKCKEAITSDGKK-GKVII 229 (296)
Q Consensus 201 ----~~~d~~~~~iL~~~~~aL~p~~~g-G~lli 229 (296)
..+......+|.-+.+.|+| | |.+++
T Consensus 159 sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~ 189 (300)
T 3eld_A 159 SSNPLVERDRTMKVLENFERWKHV---NTENFCV 189 (300)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEE
Confidence 11111224668888899999 8 76655
No 291
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.68 E-value=2.9e-05 Score=72.78 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=69.1
Q ss_pred CEEEEecCCchHHHHHHHHHCC---------------CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC-
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFP---------------KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI- 187 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~- 187 (296)
.+|+|.+||+|.++..+.+..+ ..+++++|+ +.++..|+. ...++.+..+|.+. +.
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999988765432 468999999 888887764 23456668899887 32
Q ss_pred C--ccceeEehh--hhccCCch-------------------------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 188 S--PADAVLLKW--ILHDWNDE-------------------------ECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 188 p--~~D~v~~~~--vlh~~~d~-------------------------~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+ .||+|+++= ....|..+ ....+++++.+.|+| ||++.++-
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVl 395 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLL 395 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEe
Confidence 2 499999832 21112111 113589999999999 99988774
No 292
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.62 E-value=0.00017 Score=69.54 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=69.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCC---CCeEEeccc-hhHhhcc--CC---------CCCCeeEEeccCCCC----CCc
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFP---KLECTCFDL-PHVVNGL--DS---------DLANLKYVGGDMFEA----ISP 189 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~~---------~~~ri~~~~~D~~~~----~p~ 189 (296)
.++.+|+|.|||+|.++..+++..+ ..+++++|+ +.++..| +. ..+...+...|+..+ ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999999876 357999999 8887776 21 112235666677762 235
Q ss_pred cceeEehhhh-ccCCch--------------------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 190 ADAVLLKWIL-HDWNDE--------------------------ECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 190 ~D~v~~~~vl-h~~~d~--------------------------~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
||+|+++=-. ..+..+ -...+++++.+.|+| ||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 9999883221 001110 123478889999999 899887653
No 293
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.51 E-value=0.00018 Score=67.30 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=72.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHC---CCCeEEeccc-hhHhhccCC-----CC--CCeeEEeccCCC-CCC-----ccce
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAF---PKLECTCFDL-PHVVNGLDS-----DL--ANLKYVGGDMFE-AIS-----PADA 192 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~--~ri~~~~~D~~~-~~p-----~~D~ 192 (296)
...+|+|.+||+|.++..+.+.. +..+++++|+ +.+...|+. .. +++.+..+|.+. ++| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999998875 3578999999 888887764 12 578899999987 322 4999
Q ss_pred eEehhhh-ccC------------------Cc--hHHHHHHHHHHHhcc-cCCCCcEEEEEe
Q 022515 193 VLLKWIL-HDW------------------ND--EECVKILKKCKEAIT-SDGKKGKVIIID 231 (296)
Q Consensus 193 v~~~~vl-h~~------------------~d--~~~~~iL~~~~~aL~-p~~~gG~lli~e 231 (296)
|+++=-. ..| +. .....++.++.+.|+ | ||++.++-
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~Vl 358 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVL 358 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEe
Confidence 9974100 111 10 011358999999999 8 99987765
No 294
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.38 E-value=3.7e-05 Score=83.68 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=67.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHCC-----CCeEEeccc-hhHhhccCCC--CCCeeEEeccCCCC---CC-ccceeEehh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFP-----KLECTCFDL-PHVVNGLDSD--LANLKYVGGDMFEA---IS-PADAVLLKW 197 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~D~~~~---~p-~~D~v~~~~ 197 (296)
+..+||+||+|+|..+..+++... ..+++..|+ +...+.+++. .-.++...-|..++ .+ .||+|+.++
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 356999999999988777766543 236888888 6777777641 11222221233222 12 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF 277 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf 277 (296)
+||--++. ...|+++++.|+| ||++++.+...... +.....++.-. ...+....+.++|.++|+++||
T Consensus 1320 vl~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~~~~~~-----~g~~~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1320 ALATLGDP--AVAVGNMAATLKE---GGFLLLHTLLAGHP-----LGEMVGFLTSP--EQGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp C-------------------------CCEEEEEEC---------------------------------CTTTTSSTTTTE
T ss_pred cccccccH--HHHHHHHHHhcCC---CcEEEEEecccccc-----ccccccccccc--cccCCcccCHHHHHHHHHhCCC
Confidence 99955443 4779999999999 99998887542110 00000111000 0001123367889999999999
Q ss_pred ceeEEEE
Q 022515 278 SDYKIIP 284 (296)
Q Consensus 278 ~~~~~~~ 284 (296)
+.+.+..
T Consensus 1388 ~~~~~~~ 1394 (2512)
T 2vz8_A 1388 HLVALKR 1394 (2512)
T ss_dssp EEEEEEE
T ss_pred ceeeecc
Confidence 8876543
No 295
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.32 E-value=0.00042 Score=56.91 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=67.4
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEec-cCCC-CCCcc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGG-DMFE-AISPA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~-D~~~-~~p~~ 190 (296)
..+.+.+. +.+..+|||+||++|.++...+....-.++.++|+ +.-.+.-+- .-+-|+|..+ |++. +.-.+
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 45556664 67788999999999999998877765568999998 443332211 3477999999 9776 33359
Q ss_pred ceeEehhhhccCCc----h-HHHHHHHHHHHhccc
Q 022515 191 DAVLLKWILHDWND----E-ECVKILKKCKEAITS 220 (296)
Q Consensus 191 D~v~~~~vlh~~~d----~-~~~~iL~~~~~aL~p 220 (296)
|+++|.--= --+. + ...++|.-+.+.|++
T Consensus 146 DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~ 179 (267)
T 3p8z_A 146 DTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN 179 (267)
T ss_dssp SEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS
T ss_pred cEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc
Confidence 999883221 1111 1 223466767788887
No 296
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.24 E-value=0.00063 Score=56.65 Aligned_cols=105 Identities=17% Similarity=0.098 Sum_probs=61.1
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC--C--CeEEeccchhHhhccCCCCCCe---eEEec-cCCCCCC-
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP--K--LECTCFDLPHVVNGLDSDLANL---KYVGG-DMFEAIS- 188 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p--~--~~~~~~D~~~~~~~a~~~~~ri---~~~~~-D~~~~~p- 188 (296)
.++.+.+ .++++.+|||+||+.|.++...++.-+ . -..+++|+ +...... ....+ .|..+ ||++..+
T Consensus 63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~-~~~Gv~~i~~~~G~Df~~~~~~ 138 (269)
T 2px2_A 63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLM-QSYGWNIVTMKSGVDVFYKPSE 138 (269)
T ss_dssp HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCC-CSTTGGGEEEECSCCGGGSCCC
T ss_pred HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcc-cCCCceEEEeeccCCccCCCCC
Confidence 3455554 378899999999999999998777521 1 12344453 1111110 11333 55657 9998333
Q ss_pred ccceeEehhhhc---cCCch-HHHHHHHHHHHhcccCCCCc-EEEE
Q 022515 189 PADAVLLKWILH---DWNDE-ECVKILKKCKEAITSDGKKG-KVII 229 (296)
Q Consensus 189 ~~D~v~~~~vlh---~~~d~-~~~~iL~~~~~aL~p~~~gG-~lli 229 (296)
.+|+|++--.=. ..-|. ....+|.-+.+.|+| || .+++
T Consensus 139 ~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv 181 (269)
T 2px2_A 139 ISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI 181 (269)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred CCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence 599999843211 00111 122357667789999 78 5544
No 297
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=97.18 E-value=0.00068 Score=58.90 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=58.8
Q ss_pred chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC
Q 022515 116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE 185 (296)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~ 185 (296)
+..++++.+. ..++..+||..+|.|..+..++++. |+.+++++|. |.+++.+++ ..+|++++.++|.+
T Consensus 45 Ll~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4577888887 6788999999999999999999985 7889999999 999998865 46889999998876
No 298
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.17 E-value=0.00089 Score=56.78 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=67.8
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhc---cCCC-CCCeeEEec-cCCC-CCCcc
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNG---LDSD-LANLKYVGG-DMFE-AISPA 190 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~~-~~ri~~~~~-D~~~-~~p~~ 190 (296)
..+.+.+. +.+..+|||+||++|.++...+....-.++.++|+ ..-.+. .++. -.-|.+..+ |++. +...+
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 34555554 67778999999999999997777665557999998 442221 1111 133888888 8766 33458
Q ss_pred ceeEehhhhccCCch-----HHHHHHHHHHHhcccCCCC-cEEEE
Q 022515 191 DAVLLKWILHDWNDE-----ECVKILKKCKEAITSDGKK-GKVII 229 (296)
Q Consensus 191 D~v~~~~vlh~~~d~-----~~~~iL~~~~~aL~p~~~g-G~lli 229 (296)
|++++.-. .--+.. ...++|.-+.+.|++ | |-+++
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE
Confidence 99887432 211221 224567777888988 5 55444
No 299
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.14 E-value=0.001 Score=56.74 Aligned_cols=97 Identities=13% Similarity=0.091 Sum_probs=67.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHC-----CCCeEEeccc-hhH--------------------------hhccCC-----
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAF-----PKLECTCFDL-PHV--------------------------VNGLDS----- 171 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~-----p~~~~~~~D~-~~~--------------------------~~~a~~----- 171 (296)
..+++||++|+..|..++.++... |+.+++++|. +.. ++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346799999999999998887654 4778998884 221 112222
Q ss_pred -C-CCCeeEEeccCCCC---CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 172 -D-LANLKYVGGDMFEA---IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 172 -~-~~ri~~~~~D~~~~---~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
. .++|+++.||+.+. .+ .+|++++-.-. .+.....|..+.+.|+| |.++|+|..
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~----y~~~~~~Le~~~p~L~p----GGiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL----YESTWDTLTNLYPKVSV----GGYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS----HHHHHHHHHHHGGGEEE----EEEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc----cccHHHHHHHHHhhcCC----CEEEEEcCC
Confidence 2 48999999999762 32 48998885421 13345789999999999 556666643
No 300
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.00 E-value=0.01 Score=57.29 Aligned_cols=146 Identities=9% Similarity=0.042 Sum_probs=102.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHCC--------CCeEEeccchhHhhccCC-----------C------------------
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFP--------KLECTCFDLPHVVNGLDS-----------D------------------ 172 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~-----------~------------------ 172 (296)
+...||-+|||-=.....|...+| +++++-+|.|++++.-++ .
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 457899999999999999988755 678888898988864322 0
Q ss_pred CCCeeEEeccCCCC--C-----------Cc-cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCC
Q 022515 173 LANLKYVGGDMFEA--I-----------SP-ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKK 238 (296)
Q Consensus 173 ~~ri~~~~~D~~~~--~-----------p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~ 238 (296)
.++..+++.|+.+. + +. .-++++--+|.+++.+++.++|+.+.+ + | ++.+++.|.+.+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence 14889999999872 1 11 236677788999999999999999985 4 5 588888898876543
Q ss_pred CCCchhhhhhhhhhhhhhhcC------ccccCHHHHHHHHHhcCCceeEEEEc
Q 022515 239 GDDKSIETQLFFDMLMMVLLT------GTERDEKEWTKLFTYAGFSDYKIIPI 285 (296)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~------g~~rt~~e~~~ll~~aGf~~~~~~~~ 285 (296)
.. ++ ...+ +..+...| ....+.++..+.|.+.||+.+....+
T Consensus 262 ~d-~f---~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 262 FE-PF---SKQM-LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TS-HH---HHHH-HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CC-hH---HHHH-HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 32 22 1111 11111111 13347899999999999997766543
No 301
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=96.84 E-value=0.0037 Score=53.75 Aligned_cols=130 Identities=22% Similarity=0.173 Sum_probs=75.3
Q ss_pred CCCEEEEecCCchHHHHHH----HHHCCCCe--EEeccchhHhhcc------------------CC-CCCCe--eEEecc
Q 022515 130 GLNSLVDVGGGIGTAAKAI----AKAFPKLE--CTCFDLPHVVNGL------------------DS-DLANL--KYVGGD 182 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l----~~~~p~~~--~~~~D~~~~~~~a------------------~~-~~~ri--~~~~~D 182 (296)
+.-+|+|+|=|+|...... .+..|..+ ++.++. ..+... .. ..++| ++.-||
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 3468999999999876443 34567765 454442 111100 00 23444 456788
Q ss_pred CCCC---CC--ccceeEehhhhc-cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh
Q 022515 183 MFEA---IS--PADAVLLKWILH-DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV 256 (296)
Q Consensus 183 ~~~~---~p--~~D~v~~~~vlh-~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (296)
..+. ++ .+|++++--.-- .-|+-=...+|+++++.++| ||++.-..
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p---gg~laTYt------------------------- 226 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE---KGYWVSYS------------------------- 226 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE---EEEEEESC-------------------------
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC---CcEEEEEe-------------------------
Confidence 7662 33 489998843210 00111124789999999999 77653210
Q ss_pred hcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515 257 LLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY 295 (296)
Q Consensus 257 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 295 (296)
....+++-|++|||++.++...++-..++.|.
T Consensus 227 -------aag~VRR~L~~aGF~V~k~~G~g~KReml~A~ 258 (308)
T 3vyw_A 227 -------SSLSVRKSLLTLGFKVGSSREIGRKRKGTVAS 258 (308)
T ss_dssp -------CCHHHHHHHHHTTCEEEEEECC---CEEEEEE
T ss_pred -------CcHHHHHHHHHCCCEEEecCCCCCCCceeEEe
Confidence 23467788999999988776655555666554
No 302
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=96.47 E-value=0.0034 Score=55.30 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=45.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE 185 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~ 185 (296)
+...|||||.|.|.++..|+++....+++++++ +..+...++ ..++++++.+|+++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 357899999999999999999754457999998 776665543 35789999999976
No 303
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.20 E-value=0.015 Score=51.33 Aligned_cols=106 Identities=17% Similarity=0.126 Sum_probs=73.1
Q ss_pred cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------CCCCeeEEeccCCC-C--CC-ccc
Q 022515 128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------DLANLKYVGGDMFE-A--IS-PAD 191 (296)
Q Consensus 128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~D~~~-~--~p-~~D 191 (296)
..++.+|||+-+|.|.=+.+++...++.+++..|+ +.=+...++ ...++.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56788999999999999999999877667889998 544433221 24678888888876 2 23 499
Q ss_pred eeEeh--------hhhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515 192 AVLLK--------WILH-------DWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIREN 236 (296)
Q Consensus 192 ~v~~~--------~vlh-------~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~~~ 236 (296)
.|++- .+++ .|..++ -.++|.++.+.||| ||+|+-.......
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~ 289 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCch
Confidence 99862 1221 122221 14789999999999 8877655544443
No 304
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=96.13 E-value=0.0059 Score=52.49 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=35.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS 171 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 171 (296)
.++..|||++||+|..+.+.++. +.+++++|+ +.+++.|++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 45679999999999999998876 569999999 889888765
No 305
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=95.89 E-value=0.032 Score=47.37 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=59.0
Q ss_pred cCCCCEEEEecC------CchHHHHHHHHHCCC-CeEEeccchhHhhccCCCCCCeeEEeccCCC-CC-CccceeEehhh
Q 022515 128 FEGLNSLVDVGG------GIGTAAKAIAKAFPK-LECTCFDLPHVVNGLDSDLANLKYVGGDMFE-AI-SPADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGg------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~-~~-p~~D~v~~~~v 198 (296)
.+.+.+|||+|+ -.|.+ .+.+..|. ..++.+|+.++...+. .++.||+.+ .. .++|+|++-..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~------~~IqGD~~~~~~~~k~DLVISDMA 178 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD------STLIGDCATVHTANKWDLIISDMY 178 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS------EEEESCGGGEEESSCEEEEEECCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC------eEEEccccccccCCCCCEEEecCC
Confidence 456789999995 77884 34455776 6999999944433222 458899876 22 35999987221
Q ss_pred ----hc---cC--CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 199 ----LH---DW--NDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 199 ----lh---~~--~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
-| +- ...-+..++.=+.+.|+| ||.+++=
T Consensus 179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK 216 (344)
T 3r24_A 179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK 216 (344)
T ss_dssp CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence 11 11 111355667777889999 7776653
No 306
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=95.66 E-value=0.041 Score=51.23 Aligned_cols=109 Identities=10% Similarity=0.064 Sum_probs=70.1
Q ss_pred HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-------------CCCeEEeccc-hhHhhccCC-----CCCCeeE
Q 022515 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-------------PKLECTCFDL-PHVVNGLDS-----DLANLKY 178 (296)
Q Consensus 118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~-----~~~ri~~ 178 (296)
..+++.+. ...+.+|+|-.||+|.++....+.. ....+.|+|+ +.+...|+- ..+.-++
T Consensus 207 ~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 207 RFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 34444443 3456799999999999998776532 1356899999 887776653 3344567
Q ss_pred EeccCCC-CC------CccceeEehhhh---------ccCC-----chHHHHHHHHHHHhcc-------cCCCCcEEEEE
Q 022515 179 VGGDMFE-AI------SPADAVLLKWIL---------HDWN-----DEECVKILKKCKEAIT-------SDGKKGKVIII 230 (296)
Q Consensus 179 ~~~D~~~-~~------p~~D~v~~~~vl---------h~~~-----d~~~~~iL~~~~~aL~-------p~~~gG~lli~ 230 (296)
..+|.+. +. ..||+|+.+=-. ..++ .+....++.++.+.|+ | ||++.++
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avV 361 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVV 361 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEE
Confidence 7788775 31 149999873221 1111 1122456788888886 5 8988877
Q ss_pred e
Q 022515 231 D 231 (296)
Q Consensus 231 e 231 (296)
-
T Consensus 362 l 362 (530)
T 3ufb_A 362 V 362 (530)
T ss_dssp E
T ss_pred e
Confidence 5
No 307
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=93.80 E-value=0.14 Score=42.75 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=63.5
Q ss_pred CCCEEEEecCCchHHHHHHHHH-------CCCCeEEeccc-hhHhhc---------------------------------
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKA-------FPKLECTCFDL-PHVVNG--------------------------------- 168 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~--------------------------------- 168 (296)
-++.|+++|+-.|..+..++.. .++-++.++|. ..+.+.
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3579999999999988876552 45678999983 221110
Q ss_pred -cCC---CCCCeeEEeccCCCCC-------C--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 169 -LDS---DLANLKYVGGDMFEAI-------S--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 169 -a~~---~~~ri~~~~~D~~~~~-------p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.++ ..++|+++.|++.+.. | .+|++++-. ++ .+.....+..+...|+| |.++++|.
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~---D~-Y~~t~~~le~~~p~l~~----GGvIv~DD 217 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL---DL-YEPTKAVLEAIRPYLTK----GSIVAFDE 217 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC---CC-HHHHHHHHHHHGGGEEE----EEEEEESS
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC---cc-cchHHHHHHHHHHHhCC----CcEEEEcC
Confidence 011 2488999999997622 2 378888854 11 23345789999999999 55555554
No 308
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=93.14 E-value=0.25 Score=43.22 Aligned_cols=125 Identities=8% Similarity=0.109 Sum_probs=74.2
Q ss_pred CEEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCCeeEEeccCCC-C---CC--ccceeEehhhhccCC
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A---IS--PADAVLLKWILHDWN 203 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~---~p--~~D~v~~~~vlh~~~ 203 (296)
.+++|+-||.|.++..+.++.-.. .+..+|. +..++..+.......+..+|+.+ . ++ .+|+++..--...|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 589999999999999999883212 4788898 77776665422334577888876 2 23 489999876655544
Q ss_pred ch-------H-HHHHHHHHHHhcccCCCC--cEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHH
Q 022515 204 DE-------E-CVKILKKCKEAITSDGKK--GKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFT 273 (296)
Q Consensus 204 d~-------~-~~~iL~~~~~aL~p~~~g--G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~ 273 (296)
.. + .-.++.++.+.++.. . -+++++|.+..- .. + .+.+.+.+.|+
T Consensus 83 ~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~l-------------~~--------~--~~~~~i~~~l~ 137 (343)
T 1g55_A 83 RIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKGF-------------EV--------S--STRDLLIQTIE 137 (343)
T ss_dssp -------------CHHHHHHHHGGGC--SSCCSEEEEEEETTG-------------GG--------S--HHHHHHHHHHH
T ss_pred hcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCccc-------------cC--------H--HHHHHHHHHHH
Confidence 21 1 112444444444321 1 256777765421 00 1 14567888889
Q ss_pred hcCCceeE
Q 022515 274 YAGFSDYK 281 (296)
Q Consensus 274 ~aGf~~~~ 281 (296)
+.||++..
T Consensus 138 ~~GY~v~~ 145 (343)
T 1g55_A 138 NCGFQYQE 145 (343)
T ss_dssp HTTEEEEE
T ss_pred HCCCeeEE
Confidence 99987654
No 309
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=92.48 E-value=0.098 Score=43.82 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=34.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLD 170 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 170 (296)
.++..|||..||+|..+.+..+. +.+++++|+ |..++.++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 46679999999999999988776 679999999 88877665
No 310
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=91.51 E-value=0.41 Score=40.48 Aligned_cols=100 Identities=16% Similarity=0.016 Sum_probs=67.9
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC----CC---ccceeEehhhh
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA----IS---PADAVLLKWIL 199 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~----~p---~~D~v~~~~vl 199 (296)
...+||+=+|||.++++.++. .-+++.+|+ +..++..++ ..+++++...|.++. .| .+|+|++-=-.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 456899999999999999883 578999999 887776665 457899999997651 12 49999993211
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
.. ..+..++++.+.+..+- .++|.++|.=++..
T Consensus 170 e~--k~~~~~vl~~L~~~~~r-~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSK-FSTGLYCVWYPVVN 202 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHH-CTTSEEEEEEEESS
T ss_pred CC--CcHHHHHHHHHHHhCcc-CCCeEEEEEEeccc
Confidence 10 12344556655554322 12788888766543
No 311
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=91.46 E-value=0.21 Score=48.04 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHC-------CC-----CeEEeccc-h---hHhhccC-----------------------
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAF-------PK-----LECTCFDL-P---HVVNGLD----------------------- 170 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a~----------------------- 170 (296)
+.-+|+|+|-|+|.....+++.+ |. ++++.++. | +.+..+-
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 44699999999999988877653 22 56788875 3 2222110
Q ss_pred --C---CC--CCeeEEeccCCC---CC-----CccceeEehhhh-ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 171 --S---DL--ANLKYVGGDMFE---AI-----SPADAVLLKWIL-HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 171 --~---~~--~ri~~~~~D~~~---~~-----p~~D~v~~~~vl-h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
+ .. -++++.-||..+ .+ ..+|++++--.- +.-|+-=...+++.+.+.++| |+++.-..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~t~~--- 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP---GGTFSTFT--- 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE---EEEEEESC---
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC---CCEEEecc---
Confidence 0 11 246667788765 12 248998884321 000111124688999999998 66543110
Q ss_pred CCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEE
Q 022515 235 ENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII 283 (296)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 283 (296)
.....++.|.++||.+.++.
T Consensus 212 -----------------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 -----------------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp -----------------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred -----------------------------CcHHHHHHHHhCCeEEEecc
Confidence 12356788899999877654
No 312
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=90.65 E-value=0.21 Score=44.87 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=43.1
Q ss_pred CCCCEEEEecCCchHHHHHHH-HHCCC-CeEEeccc-hhHhhccCC---C-----C-CCeeEEeccCC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIA-KAFPK-LECTCFDL-PHVVNGLDS---D-----L-ANLKYVGGDMF 184 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~---~-----~-~ri~~~~~D~~ 184 (296)
+++.+++|||++.|.++..++ +..+. .+++.++. |...+..++ . . ++++++..-.-
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 577899999999999999988 56665 79999999 887766554 2 3 67777654433
No 313
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=90.57 E-value=1 Score=39.89 Aligned_cols=119 Identities=11% Similarity=0.135 Sum_probs=75.4
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCCCCCCeeEEeccCCC-C---C-------CccceeEehhh
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A---I-------SPADAVLLKWI 198 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~---~-------p~~D~v~~~~v 198 (296)
.+++|+=||.|.++..+.++ +.+ +..+|. +..++..+..-....++.+|+.+ . + +.+|+++..--
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 47999999999999999888 455 458888 77666554323346677888876 2 1 35899988766
Q ss_pred hccCC--------chHHHHHHH---HHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515 199 LHDWN--------DEECVKILK---KCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267 (296)
Q Consensus 199 lh~~~--------d~~~~~iL~---~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 267 (296)
...|+ |+. -.++. ++.+.++| +++++|.+..-... ......++
T Consensus 81 CQ~fS~ag~~~~~d~r-~~L~~~~~~~v~~~~P-----~~~v~ENV~gl~s~--------------------~~~~~~~~ 134 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSR-NQLYMHFYRLVSELQP-----LFFLAENVPGIMQE--------------------KYSGIRNK 134 (376)
T ss_dssp CCTTC-------CHHH-HHHHHHHHHHHHHHCC-----SEEEEEECTTTTCG--------------------GGHHHHHH
T ss_pred CCCcccccCCCCCCch-HHHHHHHHHHHHHhCC-----CEEEEecchHhhcc--------------------CcHHHHHH
Confidence 55554 222 12333 34445566 67888876432110 00113456
Q ss_pred HHHHHHhcCCce
Q 022515 268 WTKLFTYAGFSD 279 (296)
Q Consensus 268 ~~~ll~~aGf~~ 279 (296)
+. .|++.||.+
T Consensus 135 i~-~l~~~GY~v 145 (376)
T 3g7u_A 135 AF-NLVSGDYDI 145 (376)
T ss_dssp HH-HHHHTTEEE
T ss_pred HH-HHHcCCCcc
Confidence 66 788889876
No 314
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=90.08 E-value=2 Score=31.72 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=53.4
Q ss_pred CEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhhccC
Q 022515 132 NSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWILHDW 202 (296)
Q Consensus 132 ~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vlh~~ 202 (296)
.+|+=+|+|. |......+... +.+++++|. ++.++.++ ...+.++.+|..++ ..++|++++. .
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~--~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~-----~ 79 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELR--ERGVRAVLGNAANEEIMQLAHLECAKWLILT-----I 79 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHH--HTTCEEEESCTTSHHHHHHTTGGGCSEEEEC-----C
T ss_pred CCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHH--HcCCCEEECCCCCHHHHHhcCcccCCEEEEE-----C
Confidence 5788899875 44444444443 678999999 88777765 24577888998762 1358888764 2
Q ss_pred Cc-hHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 203 ND-EECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 203 ~d-~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
++ .....+.. ..+.+.| +.+++.
T Consensus 80 ~~~~~n~~~~~-~a~~~~~---~~~iia 103 (140)
T 3fwz_A 80 PNGYEAGEIVA-SARAKNP---DIEIIA 103 (140)
T ss_dssp SCHHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred CChHHHHHHHH-HHHHHCC---CCeEEE
Confidence 33 33333444 4455666 555443
No 315
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=90.03 E-value=1.6 Score=37.71 Aligned_cols=121 Identities=11% Similarity=0.077 Sum_probs=74.2
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCC-CCCCeeEEeccCCC----CCCccceeEehhhhccCC
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDS-DLANLKYVGGDMFE----AISPADAVLLKWILHDWN 203 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~----~~p~~D~v~~~~vlh~~~ 203 (296)
..+++|+-||.|.++..+.++ +.+ +..+|. +..++..+. ..+.. .+|+.+ ..+.+|+++..--...|+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~---~~Di~~~~~~~~~~~D~l~~gpPCQ~fS 85 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP---EGDITQVNEKTIPDHDILCAGFPCQAFS 85 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC---BSCGGGSCGGGSCCCSEEEEECCCTTTC
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC---cCCHHHcCHhhCCCCCEEEECCCCCCcc
Confidence 468999999999999999887 454 566888 766655443 11111 577765 245689998865555443
Q ss_pred ---------chH--HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHH
Q 022515 204 ---------DEE--CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLF 272 (296)
Q Consensus 204 ---------d~~--~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 272 (296)
|+. ...-+-++.+.++| +++++|.+..-.. ..+..+.+.+.+.|
T Consensus 86 ~ag~~~g~~d~r~~L~~~~~r~i~~~~P-----~~~~~ENV~gl~~--------------------~~~~~~~~~i~~~l 140 (327)
T 2c7p_A 86 ISGKQKGFEDSRGTLFFDIARIVREKKP-----KVVFMENVKNFAS--------------------HDNGNTLEVVKNTM 140 (327)
T ss_dssp TTSCCCGGGSTTSCHHHHHHHHHHHHCC-----SEEEEEEEGGGGT--------------------GGGGHHHHHHHHHH
T ss_pred hhcccCCCcchhhHHHHHHHHHHHhccC-----cEEEEeCcHHHHh--------------------ccccHHHHHHHHHH
Confidence 221 11122234445577 6788887643110 01112457788889
Q ss_pred HhcCCceeE
Q 022515 273 TYAGFSDYK 281 (296)
Q Consensus 273 ~~aGf~~~~ 281 (296)
++.||.+..
T Consensus 141 ~~~GY~v~~ 149 (327)
T 2c7p_A 141 NELDYSFHA 149 (327)
T ss_dssp HHTTBCCEE
T ss_pred HhCCCEEEE
Confidence 999987643
No 316
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=89.95 E-value=0.16 Score=35.74 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=37.6
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.+|.--.++.|+..|.+ ++.|+.|||+.+|+++..+.++|......|
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~G 64 (102)
T 3pqk_A 18 KTLSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESG 64 (102)
T ss_dssp HHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34445566777778865 789999999999999999999998876654
No 317
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=89.80 E-value=0.068 Score=34.75 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=33.0
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+..|+++|.+.+.++|..|||+.+|++...+.+.+..+-..|
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G 53 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKED 53 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 455777886533689999999999999999888777766554
No 318
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=89.69 E-value=0.64 Score=40.30 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=77.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCe-E-Eeccc-hhHhhccCC-CCCCeeEEeccCCC-C---CC--ccceeEehhhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLE-C-TCFDL-PHVVNGLDS-DLANLKYVGGDMFE-A---IS--PADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~-~-~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~---~p--~~D~v~~~~vl 199 (296)
...+++|+-||.|.++..+.+..-..+ + ..+|+ +..++..+. ..+. +..+|+.+ . ++ .+|+++...-.
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpPC 86 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPPC 86 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCCC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCCc
Confidence 346899999999999999988732234 4 58898 766655443 1121 55678776 2 23 48999876665
Q ss_pred ccC-----------CchHHHHHHHHHHH-hcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515 200 HDW-----------NDEECVKILKKCKE-AITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267 (296)
Q Consensus 200 h~~-----------~d~~~~~iL~~~~~-aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 267 (296)
..| .|+. -.++.++.+ .++.....-+++++|.+..- .. + .+.+.
T Consensus 87 Q~fs~S~ag~~~~~~d~r-~~L~~~~~r~~i~~~~~~P~~~~lENV~gl-------------~~--------~--~~~~~ 142 (327)
T 3qv2_A 87 QPYNNSIMSKHKDINDPR-AKSVLHLYRDILPYLINKPKHIFIENVPLF-------------KE--------S--LVFKE 142 (327)
T ss_dssp TTCSHHHHTTTCTTTCGG-GHHHHHHHHTTGGGCSSCCSEEEEEECGGG-------------GG--------S--HHHHH
T ss_pred cCcccccCCCCCCCcccc-chhHHHHHHHHHHHhccCCCEEEEEchhhh-------------cC--------h--HHHHH
Confidence 555 2332 245555555 44320001378888865421 00 1 14577
Q ss_pred HHHHHHhcCCceeEE
Q 022515 268 WTKLFTYAGFSDYKI 282 (296)
Q Consensus 268 ~~~ll~~aGf~~~~~ 282 (296)
+.+.|++.||.+...
T Consensus 143 i~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 143 IYNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHhCCCEEEEE
Confidence 888899999986443
No 319
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=89.68 E-value=0.51 Score=45.11 Aligned_cols=119 Identities=20% Similarity=0.188 Sum_probs=69.8
Q ss_pred CCEEEEecCCchHHHHHHHHHC-------CC-----CeEEeccc-h---hHhhccC-----------C------------
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAF-------PK-----LECTCFDL-P---HVVNGLD-----------S------------ 171 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a~-----------~------------ 171 (296)
.-+|+|+|-|+|......++.+ |. ++++.++. | +.+..+- +
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 3589999999999888776653 22 45788875 2 3332110 0
Q ss_pred -----C--CCCeeEEeccCCC---CC-----CccceeEehhhhcc-CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 172 -----D--LANLKYVGGDMFE---AI-----SPADAVLLKWILHD-WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 172 -----~--~~ri~~~~~D~~~---~~-----p~~D~v~~~~vlh~-~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
. .-++++.-||..+ .+ ..+|++++--.--. -|+-=...+++.+++.++| ||++.-..
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~t~~---- 219 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFT---- 219 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEE---EEEEEESC----
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCC---CCEEEecc----
Confidence 0 1234456677654 12 23899888432111 0110124689999999999 76643211
Q ss_pred CCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEE
Q 022515 236 NKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIP 284 (296)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 284 (296)
....+++.|.++||.+.+...
T Consensus 220 ----------------------------~~~~vr~~L~~aGf~v~~~~~ 240 (676)
T 3ps9_A 220 ----------------------------SAGFVRRGLQDAGFTMQKRKG 240 (676)
T ss_dssp ----------------------------CCHHHHHHHHHHTCEEEEEEC
T ss_pred ----------------------------CcHHHHHHHHhCCeEEEeccc
Confidence 113567778889998776543
No 320
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=89.24 E-value=0.11 Score=35.03 Aligned_cols=41 Identities=10% Similarity=0.034 Sum_probs=33.3
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCc-chhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPS-KSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~-~l~~~l~~~~~~~ 78 (296)
+-.|.+.|... +|.|+.+||+.+|+.+. .++++|...-+.|
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eG 54 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGLTKARDINAVLIDMERQG 54 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCC
Confidence 44456667654 79999999999999998 9999888877665
No 321
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=89.09 E-value=0.16 Score=34.05 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=32.2
Q ss_pred cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
|.+.|.+. +.+++.|||+.+++++.-++|.|..+.+.|
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 55677664 799999999999999999999888887655
No 322
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=88.66 E-value=0.12 Score=36.15 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=39.1
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.+|.--.++.|+..|.+ ++.|+.|||+.+|+++..+.++|......|
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~G 64 (98)
T 3jth_A 18 KAMANERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDG 64 (98)
T ss_dssp HHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45555667888888986 799999999999999999999888876654
No 323
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=88.58 E-value=2 Score=36.87 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=52.0
Q ss_pred CEEEEecCCc--hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCCccceeEehhhhccCCchHH
Q 022515 132 NSLVDVGGGI--GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLKWILHDWNDEEC 207 (296)
Q Consensus 132 ~~vLDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh~~~d~~~ 207 (296)
.+|.=||+|. +.++..|.+.....+++++|. ++.++.+.+. +-+.-...|..+ ...++|+|++. .|....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~-G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~ 107 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTF 107 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSCSEEESCTTGGGGGCCSEEEEC-----SCGGGH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC-CCcchhcCCHHHHhhccCCEEEEe-----CCHHHH
Confidence 6899999774 234444554432238999998 7777666531 111112234333 34468999884 355566
Q ss_pred HHHHHHHHHhccc
Q 022515 208 VKILKKCKEAITS 220 (296)
Q Consensus 208 ~~iL~~~~~aL~p 220 (296)
..+++++...++|
T Consensus 108 ~~vl~~l~~~l~~ 120 (314)
T 3ggo_A 108 REIAKKLSYILSE 120 (314)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHhhccCC
Confidence 7889999999998
No 324
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=87.64 E-value=0.19 Score=34.51 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=32.9
Q ss_pred cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC
Q 022515 40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD 79 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~ 79 (296)
|.+.|.+. +.+++.|||+.+++++.-++|.|..+.+.|.
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~ 45 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQTPQPLIDAMLERMEAMGK 45 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 45667664 7999999999999999999999988877663
No 325
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=87.44 E-value=0.14 Score=37.31 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 29 SMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 29 ~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++|.--.++.|+..|.+ +|.++.|||+.+|+++..+.++|......|
T Consensus 12 ~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~~tvs~hL~~L~~~G 59 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR--GPATVSELAKPFDMALPSFMKHIHFLEDSG 59 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCSCHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCC
Confidence 355666678888888885 799999999999999999999988876654
No 326
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=86.87 E-value=0.73 Score=40.04 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=59.9
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCCeeEEeccCCCCCC-ccceeEehhhhccCC
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LANLKYVGGDMFEAIS-PADAVLLKWILHDWN 203 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~D~~~~~p-~~D~v~~~~vlh~~~ 203 (296)
..++.+||-+|+|. |.++..+++.. +.+++++|. ++-.+.+++. .+.+- .|-. ... ++|+++-.- .
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~---~~~~-~~~~~~D~vid~~-----g 243 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY---TDPK-QCKEELDFIISTI-----P 243 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE---SSGG-GCCSCEEEEEECC-----C
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec---CCHH-HHhcCCCEEEECC-----C
Confidence 66788999999875 88889999886 669999887 6666666542 33222 2211 121 688887532 2
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 204 DEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 204 d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.+ ..++.+.+.|+| +|+++++-.
T Consensus 244 ~~---~~~~~~~~~l~~---~G~iv~~G~ 266 (348)
T 3two_A 244 TH---YDLKDYLKLLTY---NGDLALVGL 266 (348)
T ss_dssp SC---CCHHHHHTTEEE---EEEEEECCC
T ss_pred cH---HHHHHHHHHHhc---CCEEEEECC
Confidence 21 246778889999 899988754
No 327
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=86.86 E-value=0.24 Score=34.38 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=37.8
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++..-.++.|+..| . ++.++.|||+.+|+++..+.+++......|
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~is~~tv~~~L~~L~~~G 71 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSLSKKQLDYHLKVLEAGF 71 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 345555677888888 6 789999999999999999999888776655
No 328
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=86.06 E-value=0.19 Score=33.61 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 48 GKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 48 ~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++|.|+.|||+.+|+++..+++.|...-+.|
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG 52 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVG 52 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4799999999999999888888888776655
No 329
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=85.99 E-value=1.3 Score=39.21 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=28.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHC-------CCCeEEeccc-hhHh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAF-------PKLECTCFDL-PHVV 166 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~-------p~~~~~~~D~-~~~~ 166 (296)
..-+|+|+|+|+|.++..+++.. ..++++++|. |...
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr 124 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR 124 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH
Confidence 34589999999999999888642 3458999998 5433
No 330
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=85.86 E-value=0.21 Score=35.48 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=36.4
Q ss_pred HHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 31 TLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 31 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+|..-.++.|+..|.+ ++.|+.|||+.+|+++..+.+++......|
T Consensus 22 ~l~~~~r~~IL~~L~~--~~~~~~ela~~l~is~stvs~~L~~L~~~G 67 (106)
T 1r1u_A 22 ALGDYNRIRIMELLSV--SEASVGHISHQLNLSQSNVSHQLKLLKSVH 67 (106)
T ss_dssp HTCSHHHHHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3444456677777775 789999999999999999999888776554
No 331
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=85.66 E-value=0.23 Score=33.59 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=34.0
Q ss_pred HHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 35 AIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 35 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.....|.+.|.+. + .|+.|||+++|++...++++|....++|
T Consensus 17 ~~~~~IL~lL~~~-g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG 58 (82)
T 1oyi_A 17 EIVCEAIKTIGIE-G-ATAAQLTRQLNMEKREVNKALYDLQRSA 58 (82)
T ss_dssp HHHHHHHHHHSSS-T-EEHHHHHHHSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-C-CCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3455677788763 4 9999999999999999999888877655
No 332
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=85.47 E-value=0.5 Score=40.93 Aligned_cols=93 Identities=19% Similarity=0.114 Sum_probs=60.8
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEe--ccCCCC----CCccceeEehhhh
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVG--GDMFEA----ISPADAVLLKWIL 199 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~D~~~~----~p~~D~v~~~~vl 199 (296)
..++.+||-+|+|. |.++..+++.. +.+++++|. ++-.+.+++......+-. .|+.+. .+++|+++...
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~-- 240 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTA-- 240 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESS--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeC--
Confidence 56778999999764 99999999987 669999998 777776664222111111 111110 12578776532
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.. ...++.+.+.|+| +|+++++-.
T Consensus 241 ---g~---~~~~~~~~~~l~~---~G~iv~~G~ 264 (340)
T 3s2e_A 241 ---VS---PKAFSQAIGMVRR---GGTIALNGL 264 (340)
T ss_dssp ---CC---HHHHHHHHHHEEE---EEEEEECSC
T ss_pred ---CC---HHHHHHHHHHhcc---CCEEEEeCC
Confidence 11 2457888899999 899887653
No 333
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=85.47 E-value=0.28 Score=35.84 Aligned_cols=49 Identities=10% Similarity=0.214 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 29 SMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 29 ~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++|.--.++.|+..|... ++.|+.|||+.+|+++..+.++|......|
T Consensus 36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~is~stvs~~L~~L~~~G 84 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD-EELCVCDIANILGVTIANASHHLRTLYKQG 84 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4455556678899999742 789999999999999999999888776554
No 334
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=85.32 E-value=0.41 Score=37.84 Aligned_cols=90 Identities=17% Similarity=0.093 Sum_probs=57.7
Q ss_pred cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-C--------C--Ccccee
Q 022515 128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A--------I--SPADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~--------~--p~~D~v 193 (296)
..++.+||.+| ||.|..+..+++.. +.+++++|. ++..+.+++......+ |..+ + . .++|++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~---d~~~~~~~~~~~~~~~~~~~D~v 111 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVG---DSRSVDFADEILELTDGYGVDVV 111 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEE---ETTCSTHHHHHHHHTTTCCEEEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEe---eCCcHHHHHHHHHHhCCCCCeEE
Confidence 56778999999 47788888777765 568888888 6666555432211111 2221 1 1 147888
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
+..- .. ..++.+.+.|+| ||+++.+-..
T Consensus 112 i~~~-----g~----~~~~~~~~~l~~---~G~~v~~g~~ 139 (198)
T 1pqw_A 112 LNSL-----AG----EAIQRGVQILAP---GGRFIELGKK 139 (198)
T ss_dssp EECC-----CT----HHHHHHHHTEEE---EEEEEECSCG
T ss_pred EECC-----ch----HHHHHHHHHhcc---CCEEEEEcCC
Confidence 7532 11 357788899999 8998887643
No 335
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=85.14 E-value=9.9 Score=28.32 Aligned_cols=85 Identities=19% Similarity=0.125 Sum_probs=49.2
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-C------CCccceeEehhhh
Q 022515 129 EGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A------ISPADAVLLKWIL 199 (296)
Q Consensus 129 ~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~------~p~~D~v~~~~vl 199 (296)
....+|+=+|+|. |......+... +.+++++|. ++.++.++ ....+.++.+|..+ + ..++|+++..-
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~-~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~-- 92 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLN-SEFSGFTVVGDAAEFETLKECGMEKADMVFAFT-- 92 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSC-TTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS--
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHH-hcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe--
Confidence 3557899999865 44444444443 568999998 77666654 12335566677543 1 23588887742
Q ss_pred ccCCchHHHHHHHHHHHhccc
Q 022515 200 HDWNDEECVKILKKCKEAITS 220 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p 220 (296)
++......+..+.+.+.|
T Consensus 93 ---~~~~~~~~~~~~~~~~~~ 110 (155)
T 2g1u_A 93 ---NDDSTNFFISMNARYMFN 110 (155)
T ss_dssp ---SCHHHHHHHHHHHHHTSC
T ss_pred ---CCcHHHHHHHHHHHHHCC
Confidence 333333444445555554
No 336
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=85.07 E-value=2.9 Score=36.58 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=61.0
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCC-eeEEeccCCC---C---C--CccceeEe
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLAN-LKYVGGDMFE---A---I--SPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r-i~~~~~D~~~---~---~--p~~D~v~~ 195 (296)
..++.+||-+|+|. |.++..+++....-+++++|. ++-.+.+++ ..+. +.+...|+.+ . . .++|+++-
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid 259 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIE 259 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEE
Confidence 56778999999866 888899998873338899987 666666654 2221 1111122211 0 1 15888875
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
.- ... ..++.+.+.|++ ||+++++....
T Consensus 260 ~~-----G~~---~~~~~~~~~l~~---~G~vv~~G~~~ 287 (370)
T 4ej6_A 260 CA-----GVA---ETVKQSTRLAKA---GGTVVILGVLP 287 (370)
T ss_dssp CS-----CCH---HHHHHHHHHEEE---EEEEEECSCCC
T ss_pred CC-----CCH---HHHHHHHHHhcc---CCEEEEEeccC
Confidence 32 222 457888889999 99998876543
No 337
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=84.98 E-value=4 Score=34.13 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=50.0
Q ss_pred CEEEEecCCc--hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHH
Q 022515 132 NSLVDVGGGI--GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECV 208 (296)
Q Consensus 132 ~~vLDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~ 208 (296)
.+|.=||+|. +.++..|.+..++.+++++|. ++.++.+.+. ..+.....|..+...++|+|++. .+.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 80 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALER-GIVDEATADFKVFAALADVIILA-----VPIKKTI 80 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT-TSCSEEESCTTTTGGGCSEEEEC-----SCHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHc-CCcccccCCHHHhhcCCCEEEEc-----CCHHHHH
Confidence 5788899886 334445555544678999998 6666554321 11111223333333468998884 3555556
Q ss_pred HHHHHHHHh-ccc
Q 022515 209 KILKKCKEA-ITS 220 (296)
Q Consensus 209 ~iL~~~~~a-L~p 220 (296)
.+++.+... +++
T Consensus 81 ~v~~~l~~~~l~~ 93 (290)
T 3b1f_A 81 DFIKILADLDLKE 93 (290)
T ss_dssp HHHHHHHTSCCCT
T ss_pred HHHHHHHhcCCCC
Confidence 788888777 877
No 338
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=84.97 E-value=0.25 Score=34.19 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=37.4
Q ss_pred HHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 31 TLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 31 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++..-.++.|+..|.+ +++.|..|||+.+|+++..+.+++......|
T Consensus 20 ~l~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~~g 66 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRDEG 66 (99)
T ss_dssp HHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred HhCChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4444566778888876 3589999999999999999999888876655
No 339
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=84.96 E-value=0.39 Score=42.20 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=60.5
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCC-CCCCe-eEEeccCCCC----C-CccceeEehh
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS-DLANL-KYVGGDMFEA----I-SPADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~ri-~~~~~D~~~~----~-p~~D~v~~~~ 197 (296)
..++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++ ..+.+ .....|+.+. . .++|+++-.-
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~ 266 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST 266 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECC
Confidence 56778999999886 88899999876 55 6888887 766666654 22211 1111121111 1 1488887532
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
.. ...++.+.+.|+| ||+++++-..
T Consensus 267 -----g~---~~~~~~~~~~l~~---~G~iv~~G~~ 291 (371)
T 1f8f_A 267 -----GS---PEILKQGVDALGI---LGKIAVVGAP 291 (371)
T ss_dssp -----CC---HHHHHHHHHTEEE---EEEEEECCCC
T ss_pred -----CC---HHHHHHHHHHHhc---CCEEEEeCCC
Confidence 11 1457888899999 8998887654
No 340
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=84.94 E-value=0.32 Score=35.56 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=37.4
Q ss_pred HHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 31 TLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 31 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+|.--.++.|+..|.+ ++.++.|||+.+|+++..+.+++......|
T Consensus 42 aL~~~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~G 87 (122)
T 1r1t_A 42 VLADPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLR 87 (122)
T ss_dssp HHCCHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3444467778888875 789999999999999999999888877655
No 341
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=84.72 E-value=0.56 Score=41.68 Aligned_cols=102 Identities=15% Similarity=0.050 Sum_probs=62.6
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCC-eeEEeccC-CCC-----CC-ccceeEeh
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLAN-LKYVGGDM-FEA-----IS-PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~r-i~~~~~D~-~~~-----~p-~~D~v~~~ 196 (296)
+.++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++.... +.+...|+ .+. .. ++|+++-.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~ 261 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDA 261 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence 66788999999876 89999999876 55 8999997 7777777642221 11111222 110 11 48988754
Q ss_pred hhhccCC--c----hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 197 WILHDWN--D----EECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 197 ~vlh~~~--d----~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
---.... . ......++.+.++|++ ||+++++-..
T Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---gG~iv~~G~~ 301 (398)
T 2dph_A 262 VGFEAHGLGDEANTETPNGALNSLFDVVRA---GGAIGIPGIY 301 (398)
T ss_dssp SCTTCBCSGGGTTSBCTTHHHHHHHHHEEE---EEEEECCSCC
T ss_pred CCCccccccccccccccHHHHHHHHHHHhc---CCEEEEeccc
Confidence 3211000 0 0001357888899999 8998876543
No 342
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=84.08 E-value=2.7 Score=36.52 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=59.7
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCCC-CCCeeEEec-----cCCCC-----CCcccee
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSD-LANLKYVGG-----DMFEA-----ISPADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~ri~~~~~-----D~~~~-----~p~~D~v 193 (296)
..++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++. .+.+ +... |+.+. ..++|++
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~~i~~~~~~g~D~v 246 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLV-LQISKESPQEIARKVEGQLGCKPEVT 246 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEE-EECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEE-EcCcccccchHHHHHHHHhCCCCCEE
Confidence 56778999999875 88999999987 55 8999987 6666666542 2211 1111 11111 1258888
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+-.- ..+ ..++.+.++|+| ||+++++-.
T Consensus 247 id~~-----g~~---~~~~~~~~~l~~---~G~iv~~G~ 274 (356)
T 1pl8_A 247 IECT-----GAE---ASIQAGIYATRS---GGTLVLVGL 274 (356)
T ss_dssp EECS-----CCH---HHHHHHHHHSCT---TCEEEECSC
T ss_pred EECC-----CCh---HHHHHHHHHhcC---CCEEEEEec
Confidence 7532 222 346778889999 999988754
No 343
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=83.24 E-value=0.38 Score=32.22 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=30.9
Q ss_pred CcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 39 GIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 39 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.|++.|.+. ++.|..|||+.+|+++..+++.|..+...|
T Consensus 4 ~Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~L~~~G 42 (81)
T 2htj_A 4 EILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLLLEKAG 42 (81)
T ss_dssp HHHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456666653 689999999999999999998887766544
No 344
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=82.87 E-value=0.37 Score=36.74 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 28 NSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 28 ~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
..++|.--.++.|+..|.+ ++.|+.|||+.+|+++..+.++|......|
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgls~stvs~hL~~L~~aG 99 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPASRSAISQHLRVLTEAG 99 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSSCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4566777789999999985 799999999999999999999988876655
No 345
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=82.85 E-value=0.26 Score=35.82 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=37.1
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++|.--.++.|+..|.+ ++.++.|||+.+|+++..+.++|......|
T Consensus 16 ~aL~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~~G 62 (118)
T 2jsc_A 16 RALADPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRGCG 62 (118)
T ss_dssp HHHSSHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTTTT
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34444566777777875 789999999999999999999888776554
No 346
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=82.85 E-value=0.35 Score=34.47 Aligned_cols=43 Identities=9% Similarity=0.065 Sum_probs=34.9
Q ss_pred HHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 34 CAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 34 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.-.++.|+..|.. ++.|+.|||+.+|+++..+.+++......|
T Consensus 20 ~~~r~~IL~~L~~--~~~~~~ela~~l~is~~tv~~~l~~L~~~g 62 (114)
T 2oqg_A 20 DETRWEILTELGR--ADQSASSLATRLPVSRQAIAKHLNALQACG 62 (114)
T ss_dssp CHHHHHHHHHHHH--SCBCHHHHHHHSSSCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3456667777754 789999999999999999999888876655
No 347
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=82.74 E-value=1.7 Score=37.67 Aligned_cols=125 Identities=10% Similarity=0.129 Sum_probs=74.8
Q ss_pred CEEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCCCCCCeeEEeccCCC-C---CC--ccceeEehhhhccCC
Q 022515 132 NSLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A---IS--PADAVLLKWILHDWN 203 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~---~p--~~D~v~~~~vlh~~~ 203 (296)
.+++|+=||.|.++..+.+..-+.+ +..+|+ +..++.-+..-....+..+|+.+ . ++ .+|+++...-...|+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence 4799999999999999988742223 567888 66665444322234466778776 2 23 479888765555443
Q ss_pred ---------chHHHHHHHHHHHhcccCCCC-cEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHH
Q 022515 204 ---------DEECVKILKKCKEAITSDGKK-GKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFT 273 (296)
Q Consensus 204 ---------d~~~~~iL~~~~~aL~p~~~g-G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~ 273 (296)
|+. -.++.++.+.++.. . -+++++|.+..-. . + .+.+.+.+.|+
T Consensus 84 ~ag~~~~~~d~r-~~L~~~~~r~i~~~--~~P~~~vlENV~gl~-------------~--------~--~~~~~i~~~l~ 137 (333)
T 4h0n_A 84 RNGKYLDDNDPR-TNSFLYLIGILDQL--DNVDYILMENVKGFE-------------N--------S--TVRNLFIDKLK 137 (333)
T ss_dssp ETTEECCTTCTT-SCCHHHHHHHGGGC--TTCCEEEEEECTTGG-------------G--------S--HHHHHHHHHHH
T ss_pred hhhhccCCcCcc-cccHHHHHHHHHHh--cCCCEEEEecchhhh-------------h--------h--hHHHHHHHHHH
Confidence 221 12344444444321 1 2678888654210 0 0 13467888899
Q ss_pred hcCCceeEE
Q 022515 274 YAGFSDYKI 282 (296)
Q Consensus 274 ~aGf~~~~~ 282 (296)
+.||.+...
T Consensus 138 ~~GY~v~~~ 146 (333)
T 4h0n_A 138 ECNFIYQEF 146 (333)
T ss_dssp HTTEEEEEE
T ss_pred hCCCeEEEE
Confidence 999986543
No 348
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=82.50 E-value=0.19 Score=35.94 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 34 CAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 34 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.-.++.|+..|.+ ++.|+.|||+.+|+++..+.+++......|
T Consensus 24 ~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~G 66 (108)
T 2kko_A 24 NGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGG 66 (108)
T ss_dssp TSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3345566677765 789999999999999999999887776554
No 349
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=82.38 E-value=2.9 Score=30.70 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH-----HHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 10 TELLEAQTHVWNHIFNFINSMTLK-----CAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~l~-----~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+++......+...+...+...+-. +..++.++..|... +++|..+||+.+++++..+.+.+......|
T Consensus 7 ~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~L~~~G 79 (142)
T 3ech_A 7 PDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCRDKALITRKIRELEGRN 79 (142)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT-TTCCHHHHHHHHC---CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 344444444444444443333332 34666678888764 689999999999999999998777766544
No 350
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=82.25 E-value=3.9 Score=35.83 Aligned_cols=94 Identities=15% Similarity=0.072 Sum_probs=60.5
Q ss_pred cCCCCEEEEecCC-chHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCCeeEEec----cCCCC-----CCccceeEe
Q 022515 128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLANLKYVGG----DMFEA-----ISPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~----D~~~~-----~p~~D~v~~ 195 (296)
.+++.+||=+|+| .|.++..+++.. +. +++++|. ++-.+.+++......+... |+.+. ..++|+++-
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid 269 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTA-GASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFE 269 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEE
Confidence 5677889999976 488888888876 55 8999997 7777777652211111111 11110 125888875
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCC-cEEEEEeee
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKK-GKVIIIDMI 233 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~g-G~lli~e~~ 233 (296)
.- ..+ ..++.+.+.+++ | |+++++-..
T Consensus 270 ~~-----g~~---~~~~~~~~~l~~---g~G~iv~~G~~ 297 (378)
T 3uko_A 270 CI-----GNV---SVMRAALECCHK---GWGTSVIVGVA 297 (378)
T ss_dssp CS-----CCH---HHHHHHHHTBCT---TTCEEEECSCC
T ss_pred CC-----CCH---HHHHHHHHHhhc---cCCEEEEEccc
Confidence 32 222 457888899998 8 998887653
No 351
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=82.08 E-value=0.34 Score=32.34 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=32.6
Q ss_pred HHcCcchhcccCCC---CCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGK---PMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~---~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.+..|+++|.+. + ++|+.|||+++|++...+.++|...-+.|
T Consensus 15 ~~~~IL~~L~~~-~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 15 QEQRILKFLEEL-GEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp HHHHHHHHHHHH-CSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 345576777653 4 79999999999999998888887766554
No 352
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=82.00 E-value=2.5 Score=36.61 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=59.3
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCCeeEEe---ccCCCC----C-----Cccce
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LANLKYVG---GDMFEA----I-----SPADA 192 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~---~D~~~~----~-----p~~D~ 192 (296)
..++.+||-+|+|. |.++..+++.. +.++++.|. ++-.+.+++. .+. .+.. .|+.+. . .++|+
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~-~~~~~~~~~~~~~i~~~~~~~~g~g~D~ 243 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADV-TLVVDPAKEEESSIIERIRSAIGDLPNV 243 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSE-EEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCE-EEcCcccccHHHHHHHHhccccCCCCCE
Confidence 56778999999765 88888898876 667888887 6666666542 221 1111 122111 1 24888
Q ss_pred eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
++-.- ..+ ..++.+.++|+| +|+++++-.
T Consensus 244 vid~~-----g~~---~~~~~~~~~l~~---~G~iv~~G~ 272 (352)
T 1e3j_A 244 TIDCS-----GNE---KCITIGINITRT---GGTLMLVGM 272 (352)
T ss_dssp EEECS-----CCH---HHHHHHHHHSCT---TCEEEECSC
T ss_pred EEECC-----CCH---HHHHHHHHHHhc---CCEEEEEec
Confidence 87532 222 347778889999 999988754
No 353
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=81.47 E-value=5.2 Score=35.72 Aligned_cols=89 Identities=15% Similarity=0.135 Sum_probs=55.1
Q ss_pred CCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhhcc
Q 022515 131 LNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWILHD 201 (296)
Q Consensus 131 ~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vlh~ 201 (296)
..+|+=+|+|. |......+... +..++++|. ++.++.+++ ..+.++.||..++ ...+|++++.-
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~~~v~~~~~--~g~~vi~GDat~~~~L~~agi~~A~~viv~~---- 76 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDPDHIETLRK--FGMKVFYGDATRMDLLESAGAAKAEVLINAI---- 76 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCHHHHHHHHH--TTCCCEESCTTCHHHHHHTTTTTCSEEEECC----
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHh--CCCeEEEcCCCCHHHHHhcCCCccCEEEECC----
Confidence 35688888865 34434444443 678999999 888887752 3467788998873 23588887742
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
+++..-..+....+.+.| ..++++-
T Consensus 77 -~~~~~n~~i~~~ar~~~p---~~~Iiar 101 (413)
T 3l9w_A 77 -DDPQTNLQLTEMVKEHFP---HLQIIAR 101 (413)
T ss_dssp -SSHHHHHHHHHHHHHHCT---TCEEEEE
T ss_pred -CChHHHHHHHHHHHHhCC---CCeEEEE
Confidence 333333334445555666 4566554
No 354
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=81.23 E-value=7.8 Score=30.55 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=58.4
Q ss_pred EEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC----CCccceeEehhhhc--cCC
Q 022515 133 SLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA----ISPADAVLLKWILH--DWN 203 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~----~p~~D~v~~~~vlh--~~~ 203 (296)
+||=.| |+|.+..++++.+ .+.++++++. +.-.... ...+++++.+|+.++ +.+.|+++..--.. ...
T Consensus 2 kilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~ 78 (224)
T 3h2s_A 2 KIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR--LGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGR 78 (224)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--TCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSC
T ss_pred EEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEecccccccc--cCCCceEEecccccccHhhcccCCEEEECCccCCCcch
Confidence 455454 5565555555532 2568888887 5544433 346799999999873 23578887654332 011
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 204 DEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 204 d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
........+++.++++.. |++++.+..
T Consensus 79 ~~~n~~~~~~l~~a~~~~--~~~~v~~SS 105 (224)
T 3h2s_A 79 GYLHLDFATHLVSLLRNS--DTLAVFILG 105 (224)
T ss_dssp THHHHHHHHHHHHTCTTC--CCEEEEECC
T ss_pred hhHHHHHHHHHHHHHHHc--CCcEEEEec
Confidence 233456678888888773 677777753
No 355
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=81.13 E-value=0.68 Score=35.58 Aligned_cols=42 Identities=7% Similarity=0.227 Sum_probs=35.6
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.+..|.+.|.+ ++++|..+||+++|+++..+.+++..+...|
T Consensus 4 ~d~~il~~L~~-~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 4 LDRKILRILQE-DSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHTT-CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 35567888876 3799999999999999999999888887766
No 356
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=80.43 E-value=13 Score=29.39 Aligned_cols=136 Identities=10% Similarity=0.113 Sum_probs=68.9
Q ss_pred EEEEecCCchHHHHHHHHH---CCCCeEEeccc-hh-HhhccCCCCCCeeEEeccCCCC------CCccceeEehhhhcc
Q 022515 133 SLVDVGGGIGTAAKAIAKA---FPKLECTCFDL-PH-VVNGLDSDLANLKYVGGDMFEA------ISPADAVLLKWILHD 201 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~---~p~~~~~~~D~-~~-~~~~a~~~~~ri~~~~~D~~~~------~p~~D~v~~~~vlh~ 201 (296)
+||=.| |+|....++++. ..+.++++++. ++ .++.......++.++.+|+.++ +.+.|+++..--..
T Consensus 7 ~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~- 84 (221)
T 3r6d_A 7 YITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES- 84 (221)
T ss_dssp EEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC-
T ss_pred EEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC-
Confidence 466666 444444444332 24678888888 55 4433211356799999999872 23578887654321
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcC-ccccCHHHHHHHHHhcCCcee
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLT-GTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~rt~~e~~~ll~~aGf~~~ 280 (296)
+-+ .+++.++++.. ..++++.+.........+. ....+... ..+ ....+....+.++++.|+...
T Consensus 85 --n~~----~~~~~~~~~~~-~~~~iv~iSs~~~~~~~~~---~~~~~~~~----~~~~~y~~~K~~~e~~~~~~~i~~~ 150 (221)
T 3r6d_A 85 --GSD----MASIVKALSRX-NIRRVIGVSMAGLSGEFPV---ALEKWTFD----NLPISYVQGERQARNVLRESNLNYT 150 (221)
T ss_dssp --HHH----HHHHHHHHHHT-TCCEEEEEEETTTTSCSCH---HHHHHHHH----TSCHHHHHHHHHHHHHHHHSCSEEE
T ss_pred --Chh----HHHHHHHHHhc-CCCeEEEEeeceecCCCCc---cccccccc----ccccHHHHHHHHHHHHHHhCCCCEE
Confidence 111 34444444331 0257776655433221110 11011100 001 111245667778888898876
Q ss_pred EEEE
Q 022515 281 KIIP 284 (296)
Q Consensus 281 ~~~~ 284 (296)
-+.|
T Consensus 151 ~vrp 154 (221)
T 3r6d_A 151 ILRL 154 (221)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6665
No 357
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=80.31 E-value=23 Score=29.02 Aligned_cols=94 Identities=11% Similarity=0.064 Sum_probs=56.6
Q ss_pred CEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCCccceeEehhhhccCCchHH
Q 022515 132 NSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLKWILHDWNDEEC 207 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh~~~d~~~ 207 (296)
.+||=.| + |.+..++++.. .+.++++++. +.-.... ...+++++.+|+.+ ...++|+|+.........++..
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~ 81 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAI--RASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVL 81 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHH--HHTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHH
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhH--hhCCCeEEEecccccccCCCCEEEECCCccccccHHH
Confidence 5789898 4 88888877754 2567888887 4433222 23568999999877 4446888877554443333333
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEee
Q 022515 208 VKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 208 ~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
..+++.+.+.-.. -.+++.+..
T Consensus 82 ~~l~~a~~~~~~~---~~~~v~~Ss 103 (286)
T 3ius_A 82 AALGDQIAARAAQ---FRWVGYLST 103 (286)
T ss_dssp HHHHHHHHHTGGG---CSEEEEEEE
T ss_pred HHHHHHHHhhcCC---ceEEEEeec
Confidence 4455544443122 256665554
No 358
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=80.12 E-value=0.77 Score=40.37 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=58.6
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCe-eEEeccCCCCC-CccceeEehhhhccC
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANL-KYVGGDMFEAI-SPADAVLLKWILHDW 202 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri-~~~~~D~~~~~-p~~D~v~~~~vlh~~ 202 (296)
.+++.+||-+|+|. |.++..+++.. +.+++++|. ++-.+.+++ ..+.+ .....|+.+.. .++|+++-.--
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g---- 266 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA---- 266 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS----
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCC----
Confidence 66788999999875 88888898876 678888886 666666554 22211 11111111111 35888875321
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.+ ..++.+.+.|+| +|+++.+-.
T Consensus 267 -~~---~~~~~~~~~l~~---~G~iv~~G~ 289 (369)
T 1uuf_A 267 -AP---HNLDDFTTLLKR---DGTMTLVGA 289 (369)
T ss_dssp -SC---CCHHHHHTTEEE---EEEEEECCC
T ss_pred -CH---HHHHHHHHHhcc---CCEEEEecc
Confidence 11 235677788999 899887654
No 359
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=79.98 E-value=2.6 Score=37.26 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=61.5
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCCC-CCCeeEEecc-CCCC-----C-CccceeEeh
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSD-LANLKYVGGD-MFEA-----I-SPADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~ri~~~~~D-~~~~-----~-p~~D~v~~~ 196 (296)
+.++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++. .+-+.+...| +.+. . .++|+|+-.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~ 261 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDA 261 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEEC
Confidence 66788999999765 89999999987 45 7888887 7767766542 2211111111 1110 1 248888753
Q ss_pred hh----------hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 197 WI----------LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 197 ~v----------lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
-- .|+-.. ...++.+.+.|++ ||+++++-..
T Consensus 262 ~G~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~---~G~iv~~G~~ 302 (398)
T 1kol_A 262 VGFEARGHGHEGAKHEAP---ATVLNSLMQVTRV---AGKIGIPGLY 302 (398)
T ss_dssp CCTTCBCSSTTGGGSBCT---THHHHHHHHHEEE---EEEEEECSCC
T ss_pred CCCcccccccccccccch---HHHHHHHHHHHhc---CCEEEEeccc
Confidence 22 121111 1357888899999 8998877543
No 360
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=79.95 E-value=0.36 Score=33.40 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=38.6
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++..-.++.|+..|... ++.|..|||+.+++++..+.+++......|
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~is~~tvs~~l~~L~~~g 58 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDLTPGNLDSHIRVLERNG 58 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456666777888888642 689999999999999999999888776655
No 361
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=79.82 E-value=0.77 Score=30.95 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=31.7
Q ss_pred HcCcchhcccCCC---CCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGK---PMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~---~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+..|.+.|.+. + ++|+.|||+++|++...+.++|...-+.|
T Consensus 12 ~~~IL~~L~~~-~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 12 EQRILKFLEEL-GEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp HHHHHHHHHHH-CTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44466666653 4 79999999999999998888887776655
No 362
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=79.40 E-value=0.84 Score=32.15 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=30.3
Q ss_pred HHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhh
Q 022515 34 CAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQ 70 (296)
Q Consensus 34 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~ 70 (296)
.+.++||+..|.. ++.|-.|||+.+|++...+.|.
T Consensus 44 l~~R~~l~~~L~~--ge~TQREIA~~lGiS~stISRi 78 (101)
T 1jhg_A 44 LGTRVRIIEELLR--GEMSQRELKNELGAGIATITRG 78 (101)
T ss_dssp HHHHHHHHHHHHH--CCSCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCcCHHHHHHHHCCChhhhhHH
Confidence 4567999999986 7899999999999999888873
No 363
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=79.34 E-value=1.9 Score=37.75 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=58.9
Q ss_pred CCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCCeeEEec-cCCC---CC--CccceeEehhhh
Q 022515 130 GLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LANLKYVGG-DMFE---AI--SPADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~-D~~~---~~--p~~D~v~~~~vl 199 (296)
++.+||=+| ||.|.++..+++...+.+++++|. ++-.+.+++. .+.+ +-.. |+.+ .. .++|+++-.-
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~v-i~~~~~~~~~v~~~~~~g~Dvvid~~-- 247 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHV-IDHSKPLAAEVAALGLGAPAFVFSTT-- 247 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEE-ECTTSCHHHHHHTTCSCCEEEEEECS--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEE-EeCCCCHHHHHHHhcCCCceEEEECC--
Confidence 567899998 567999999999766789999998 7666666542 2211 1111 1111 11 2488877532
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.. ...++.+.++|+| +|+++++.
T Consensus 248 ---g~---~~~~~~~~~~l~~---~G~iv~~g 270 (363)
T 4dvj_A 248 ---HT---DKHAAEIADLIAP---QGRFCLID 270 (363)
T ss_dssp ---CH---HHHHHHHHHHSCT---TCEEEECS
T ss_pred ---Cc---hhhHHHHHHHhcC---CCEEEEEC
Confidence 21 2457888899999 99998873
No 364
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=79.31 E-value=0.39 Score=33.61 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=32.6
Q ss_pred HHHHHHHcCcchhc-ccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh
Q 022515 31 TLKCAIQLGIPDII-SKHGKPMTLNELVSALTINPSKSRCQLRTWFQ 76 (296)
Q Consensus 31 ~l~~a~~l~lf~~L-~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~ 76 (296)
+|.--.++.|+..| .. ++.++.|||+.+|+++..+.+++...-.
T Consensus 23 aL~~~~Rl~IL~~l~~~--~~~~~~ela~~l~is~stvs~hL~~L~~ 67 (99)
T 2zkz_A 23 TMAHPMRLKIVNELYKH--KALNVTQIIQILKLPQSTVSQHLCKMRG 67 (99)
T ss_dssp HHCSHHHHHHHHHHHHH--SCEEHHHHHHHHTCCHHHHHHHHHHHBT
T ss_pred HhCCHHHHHHHHHHHHC--CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444566667433 34 7899999999999999999998876543
No 365
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=78.94 E-value=26 Score=28.79 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=53.1
Q ss_pred EEEEecCCchHHHHHHHHH---CCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC------CCccceeEehhhhccC
Q 022515 133 SLVDVGGGIGTAAKAIAKA---FPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA------ISPADAVLLKWILHDW 202 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~---~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~------~p~~D~v~~~~vlh~~ 202 (296)
+||=. ||+|.+..++++. .++.++++++. +.-.... ...+++++.+|+.++ +.+.|+|+.......
T Consensus 2 ~ilVt-GatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~--~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~- 77 (289)
T 3e48_A 2 NIMLT-GATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD--WRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIH- 77 (289)
T ss_dssp CEEEE-TTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG--GBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCC-
T ss_pred EEEEE-cCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh--hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCc-
Confidence 35544 4556665555553 34678888877 5432222 346799999999872 235788876433211
Q ss_pred CchHHHHHHHHHHHhcccCCCC-cEEEEEeee
Q 022515 203 NDEECVKILKKCKEAITSDGKK-GKVIIIDMI 233 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~g-G~lli~e~~ 233 (296)
+........+++.++++.. | ++++.+...
T Consensus 78 ~~~~~~~~~~~l~~aa~~~--gv~~iv~~Ss~ 107 (289)
T 3e48_A 78 PSFKRIPEVENLVYAAKQS--GVAHIIFIGYY 107 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHT--TCCEEEEEEES
T ss_pred cchhhHHHHHHHHHHHHHc--CCCEEEEEccc
Confidence 2222234455555555541 3 466666654
No 366
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=78.77 E-value=9.8 Score=33.08 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=58.8
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCCC-CCCeeEEec----cCCCC-----CCccceeE
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSD-LANLKYVGG----DMFEA-----ISPADAVL 194 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~ri~~~~~----D~~~~-----~p~~D~v~ 194 (296)
..++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++. .+.+ +... |+.+. ..++|+++
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~~~~~~~g~D~vi 267 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGATDF-VNPNDHSEPISQVLSKMTNGGVDFSL 267 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCCEE-ECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhCCceE-EeccccchhHHHHHHHHhCCCCCEEE
Confidence 56778999999765 88888899886 55 7888887 6666666542 2211 1111 11110 12478887
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKK-GKVIIIDM 232 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~g-G~lli~e~ 232 (296)
-.- ..+ ..++.+.++|+| | |+++++-.
T Consensus 268 d~~-----g~~---~~~~~~~~~l~~---~~G~iv~~G~ 295 (374)
T 1cdo_A 268 ECV-----GNV---GVMRNALESCLK---GWGVSVLVGW 295 (374)
T ss_dssp ECS-----CCH---HHHHHHHHTBCT---TTCEEEECSC
T ss_pred ECC-----CCH---HHHHHHHHHhhc---CCcEEEEEcC
Confidence 532 111 357788899999 9 99887754
No 367
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=78.57 E-value=4.1 Score=34.86 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=58.6
Q ss_pred cCCCCEEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-C----------CCcccee
Q 022515 128 FEGLNSLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A----------ISPADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~----------~p~~D~v 193 (296)
..++.+||-.|| |.|..+..+++.. +.++++.|. ++-.+.+++......+ |..+ + ..++|++
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~---d~~~~~~~~~~~~~~~~~~~d~v 218 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFDAAF---NYKTVNSLEEALKKASPDGYDCY 218 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEE---ETTSCSCHHHHHHHHCTTCEEEE
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCcEEE---ecCCHHHHHHHHHHHhCCCCeEE
Confidence 567789999996 7788888888875 568999887 6666655432222111 2221 0 1247887
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
+..- .. ..++.+.+.|++ ||+++++-..
T Consensus 219 i~~~-----g~----~~~~~~~~~l~~---~G~~v~~g~~ 246 (333)
T 1v3u_A 219 FDNV-----GG----EFLNTVLSQMKD---FGKIAICGAI 246 (333)
T ss_dssp EESS-----CH----HHHHHHHTTEEE---EEEEEECCCC
T ss_pred EECC-----Ch----HHHHHHHHHHhc---CCEEEEEecc
Confidence 6532 22 247788899999 8999887643
No 368
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=78.42 E-value=0.92 Score=34.13 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=34.9
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.|...|.+. ++.|..|||+++|+++..+.+++..+...|
T Consensus 4 ~~~~il~~L~~~-~~~~~~ela~~lg~s~~tv~~~l~~L~~~G 45 (150)
T 2pn6_A 4 IDLRILKILQYN-AKYSLDEIAREIRIPKATLSYRIKKLEKDG 45 (150)
T ss_dssp HHHHHHHHHTTC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 355677888763 789999999999999999999888887665
No 369
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=78.24 E-value=0.48 Score=41.15 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=59.6
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-CCCCe-eEEe-ccCCCC--CC-ccceeEehhh
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-DLANL-KYVG-GDMFEA--IS-PADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~~ri-~~~~-~D~~~~--~p-~~D~v~~~~v 198 (296)
. ++.+||-+|+|. |.++..+++.. |+.+++++|. ++-.+.+++ ..+.+ .... .|.... .+ ++|+++-.-
T Consensus 169 ~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~- 246 (344)
T 2h6e_A 169 F-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLV- 246 (344)
T ss_dssp C-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESS-
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECC-
Confidence 5 678999999764 88888888864 5789999997 666666654 22221 1111 121111 12 588887642
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
..+ ..++.+.+.|+| ||+++++-.
T Consensus 247 ----g~~---~~~~~~~~~l~~---~G~iv~~g~ 270 (344)
T 2h6e_A 247 ----GTE---ETTYNLGKLLAQ---EGAIILVGM 270 (344)
T ss_dssp ----CCH---HHHHHHHHHEEE---EEEEEECCC
T ss_pred ----CCh---HHHHHHHHHhhc---CCEEEEeCC
Confidence 221 357788899999 899887654
No 370
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=77.82 E-value=1.6 Score=37.76 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=62.4
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCCeeEEec-cCCCC-----CC-ccceeEehh
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LANLKYVGG-DMFEA-----IS-PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~-D~~~~-----~p-~~D~v~~~~ 197 (296)
..++.+||-+|+|. |.++..+++.....+++++|. ++-.+.+++. .+.+ +... |+.+. .+ ++|+++-.-
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~-i~~~~~~~~~v~~~t~g~g~d~v~d~~ 247 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAA-VKSGAGAADAIRELTGGQGATAVFDFV 247 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEE-EECSTTHHHHHHHHHGGGCEEEEEESS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEE-EcCCCcHHHHHHHHhCCCCCeEEEECC
Confidence 56778999999765 888999998876789999988 7767766652 2221 1111 11111 11 478877532
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
..+ ..++.+.+.|++ ||+++++-..
T Consensus 248 -----G~~---~~~~~~~~~l~~---~G~iv~~G~~ 272 (345)
T 3jv7_A 248 -----GAQ---STIDTAQQVVAV---DGHISVVGIH 272 (345)
T ss_dssp -----CCH---HHHHHHHHHEEE---EEEEEECSCC
T ss_pred -----CCH---HHHHHHHHHHhc---CCEEEEECCC
Confidence 222 367888899999 8999887643
No 371
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=77.58 E-value=0.62 Score=34.02 Aligned_cols=42 Identities=10% Similarity=0.220 Sum_probs=33.2
Q ss_pred HcCcchhcccCCCC-CCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKP-MTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~-~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+..|+..|.+.++| +|+.|||+.++++...+.|.+..+...|
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~G 70 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKE 70 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44566666654456 9999999999999999999888877655
No 372
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=77.13 E-value=3 Score=36.05 Aligned_cols=94 Identities=27% Similarity=0.320 Sum_probs=59.2
Q ss_pred cCCCCEEEEecCC--chHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec--cC----CCCC--CccceeEeh
Q 022515 128 FEGLNSLVDVGGG--IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG--DM----FEAI--SPADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--D~----~~~~--p~~D~v~~~ 196 (296)
..++.+||-+|+| .|..+..+++...+.++++.|. ++-.+.+++......+... +. .+-. .++|+++-.
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 247 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL 247 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEEC
Confidence 5677899999987 7788888888764678999987 6666655431111111111 11 0101 257887753
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
- ..+ ..++.+.+.|+| +|+++++-.
T Consensus 248 ~-----g~~---~~~~~~~~~l~~---~G~iv~~g~ 272 (347)
T 1jvb_A 248 N-----NSE---KTLSVYPKALAK---QGKYVMVGL 272 (347)
T ss_dssp C-----CCH---HHHTTGGGGEEE---EEEEEECCS
T ss_pred C-----CCH---HHHHHHHHHHhc---CCEEEEECC
Confidence 2 111 357788899999 899887654
No 373
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=77.03 E-value=1.3 Score=35.17 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=37.8
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++....+..|+..|.+ ++.|..|||+.+|+++..+.+++......|
T Consensus 15 k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lglS~stv~~~l~~Le~~G 61 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN--KEMTISQLSEILGKTPQTIYHHIEKLKEAG 61 (192)
T ss_dssp HHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34445567778888874 799999999999999999999888776554
No 374
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=76.85 E-value=8.5 Score=33.51 Aligned_cols=93 Identities=12% Similarity=-0.031 Sum_probs=58.4
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCCeeEEec----cCCCC-----CCccceeEe
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLANLKYVGG----DMFEA-----ISPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~----D~~~~-----~p~~D~v~~ 195 (296)
..++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++......+... |+.+. ..++|+++-
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid 267 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE 267 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEE
Confidence 56778999999765 88888899887 55 7888886 6666665542211111111 11110 124788775
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKK-GKVIIIDM 232 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~g-G~lli~e~ 232 (296)
.- ..+ ..++.+.++|++ + |+++++-.
T Consensus 268 ~~-----g~~---~~~~~~~~~l~~---~~G~iv~~G~ 294 (374)
T 2jhf_A 268 VI-----GRL---DTMVTALSCCQE---AYGVSVIVGV 294 (374)
T ss_dssp CS-----CCH---HHHHHHHHHBCT---TTCEEEECSC
T ss_pred CC-----CCH---HHHHHHHHHhhc---CCcEEEEecc
Confidence 32 221 357788889999 9 99887654
No 375
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=76.80 E-value=0.72 Score=33.20 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=36.8
Q ss_pred HHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 31 TLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 31 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++..-.++.|+..|.+ ++.|+.+||+.+++++..+.+++......|
T Consensus 28 ~l~~~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~~G 73 (119)
T 2lkp_A 28 ALATPSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRNLG 73 (119)
T ss_dssp HHCCHHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3444567778888876 689999999999999999999888776644
No 376
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=76.56 E-value=13 Score=32.38 Aligned_cols=93 Identities=13% Similarity=-0.004 Sum_probs=58.6
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCCeeEEec----cCCCC-----CCccceeEe
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLANLKYVGG----DMFEA-----ISPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~----D~~~~-----~p~~D~v~~ 195 (296)
..++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++......+-.. |+.+. ..++|+++-
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid 271 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLD 271 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEE
Confidence 56778999999764 88888999887 55 7888887 6666666542211111111 11110 125888875
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKK-GKVIIIDM 232 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~g-G~lli~e~ 232 (296)
.- .. ...++.+.+.|++ | |+++++-.
T Consensus 272 ~~-----G~---~~~~~~~~~~l~~---~~G~iv~~G~ 298 (376)
T 1e3i_A 272 CA-----GT---AQTLKAAVDCTVL---GWGSCTVVGA 298 (376)
T ss_dssp SS-----CC---HHHHHHHHHTBCT---TTCEEEECCC
T ss_pred CC-----CC---HHHHHHHHHHhhc---CCCEEEEECC
Confidence 32 12 1457788899999 9 99887754
No 377
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=76.33 E-value=22 Score=30.56 Aligned_cols=93 Identities=15% Similarity=0.021 Sum_probs=60.2
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCe-EEeccc-hhHhhccCCCC-CCeeEEe-----ccCCCC----C-C-ccce
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDSDL-ANLKYVG-----GDMFEA----I-S-PADA 192 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~-~ri~~~~-----~D~~~~----~-p-~~D~ 192 (296)
..++.+||=+|+|. |.++..+++.. +.+ +++.|. ++-.+.+++.. .-+.+.. .|+.+. . + ++|+
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dv 255 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAV 255 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCE
Confidence 56778899899765 88899999886 555 888887 66666665432 2233321 122111 1 2 4888
Q ss_pred eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
++-.- ..+ ..++.+.+.|++ ||+++++-.
T Consensus 256 vid~~-----g~~---~~~~~~~~~l~~---~G~iv~~G~ 284 (363)
T 3m6i_A 256 ALECT-----GVE---SSIAAAIWAVKF---GGKVFVIGV 284 (363)
T ss_dssp EEECS-----CCH---HHHHHHHHHSCT---TCEEEECCC
T ss_pred EEECC-----CCh---HHHHHHHHHhcC---CCEEEEEcc
Confidence 87632 222 357788889999 999988764
No 378
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=76.28 E-value=1.7 Score=37.16 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=57.0
Q ss_pred cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccchhHhhccCC-CCCC-eeEEecc-CCCCCCccceeEehhhhccC
Q 022515 128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-DLAN-LKYVGGD-MFEAISPADAVLLKWILHDW 202 (296)
Q Consensus 128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~r-i~~~~~D-~~~~~p~~D~v~~~~vlh~~ 202 (296)
..++.+||=+| ||.|.++..+++.. +.++++.+.++-.+.+++ ..+. ++....| +.+...++|+++-.-
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~----- 223 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLV----- 223 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESS-----
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECC-----
Confidence 67788999986 67799999999987 668887776444555554 2222 1111112 111234588887532
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
..+ .+..+.++|++ ||+++.+
T Consensus 224 g~~----~~~~~~~~l~~---~G~iv~~ 244 (321)
T 3tqh_A 224 GGD----VGIQSIDCLKE---TGCIVSV 244 (321)
T ss_dssp CHH----HHHHHGGGEEE---EEEEEEC
T ss_pred CcH----HHHHHHHhccC---CCEEEEe
Confidence 222 23778889999 8998876
No 379
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=76.17 E-value=6.9 Score=34.07 Aligned_cols=93 Identities=11% Similarity=-0.023 Sum_probs=58.5
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCCeeEEec----cCCCC-----CCccceeEe
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLANLKYVGG----DMFEA-----ISPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~----D~~~~-----~p~~D~v~~ 195 (296)
..++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++......+... |+.+. ..++|+++-
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid 267 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE 267 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 56778999999764 88888888876 45 7888886 6666666542211111111 11110 125888875
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKK-GKVIIIDM 232 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~g-G~lli~e~ 232 (296)
.- .. ...++.+.++|++ + |+++++-.
T Consensus 268 ~~-----g~---~~~~~~~~~~l~~---~~G~iv~~G~ 294 (373)
T 1p0f_A 268 CA-----GR---IETMMNALQSTYC---GSGVTVVLGL 294 (373)
T ss_dssp CS-----CC---HHHHHHHHHTBCT---TTCEEEECCC
T ss_pred CC-----CC---HHHHHHHHHHHhc---CCCEEEEEcc
Confidence 32 11 1457788899999 9 99887764
No 380
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=76.07 E-value=1.1 Score=33.58 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=33.7
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+..|++.|.+. ++.|..|||+++|+++..+.+.+..+...|
T Consensus 7 d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 47 (144)
T 2cfx_A 7 DLNIIEELKKD-SRLSMRELGRKIKLSPPSVTERVRQLESFG 47 (144)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44567777763 789999999999999999999888877665
No 381
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=75.78 E-value=1.1 Score=33.78 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=33.8
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+..|+..|.+. ++.|..|||+++|+++..+.+++..+...|
T Consensus 9 ~~~iL~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (150)
T 2w25_A 9 DRILVRELAAD-GRATLSELATRAGLSVSAVQSRVRRLESRG 49 (150)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44567777653 789999999999999999999888877765
No 382
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=75.56 E-value=14 Score=31.45 Aligned_cols=120 Identities=13% Similarity=0.201 Sum_probs=73.4
Q ss_pred EEEEecCCchHHHHHHHHHCCCCeE-Eeccc-hhHhhccCC-CCCCeeEEeccCCC----CCCccceeEehhhhccC---
Q 022515 133 SLVDVGGGIGTAAKAIAKAFPKLEC-TCFDL-PHVVNGLDS-DLANLKYVGGDMFE----AISPADAVLLKWILHDW--- 202 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~----~~p~~D~v~~~~vlh~~--- 202 (296)
+|+|+=||.|.++..|.+. +.++ ..+|+ +..++.-+. .. -.+..+|+.+ .+|..|+++...-...|
T Consensus 2 kvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~--~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~a 77 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS--AKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEG 77 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCC--SEEEESCGGGCCGGGSCCCSEEECCCCGGGTEET
T ss_pred eEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC--CCcccCChhhCCHhhCCcccEEEecCCCCCcCCC
Confidence 6999999999999988876 4554 46777 655554332 22 2567788876 25678988876544444
Q ss_pred ------CchH--HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh
Q 022515 203 ------NDEE--CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY 274 (296)
Q Consensus 203 ------~d~~--~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~ 274 (296)
.|+. ...-+-++.+.++| +++++|.+..-.. ........++.+.|++
T Consensus 78 g~~~g~~d~R~~L~~~~~r~i~~~~P-----k~~~~ENV~gl~~--------------------~~~~~~~~~i~~~l~~ 132 (331)
T 3ubt_Y 78 GSLRGIDDPRGKLFYEYIRILKQKKP-----IFFLAENVKGMMA--------------------QRHNKAVQEFIQEFDN 132 (331)
T ss_dssp TEECCTTCGGGHHHHHHHHHHHHHCC-----SEEEEEECCGGGG--------------------CTTSHHHHHHHHHHHH
T ss_pred CCccCCCCchhHHHHHHHHHHhccCC-----eEEEeeeeccccc--------------------ccccchhhhhhhhhcc
Confidence 2332 12222344555677 6788887642110 0111245677888899
Q ss_pred cCCceeE
Q 022515 275 AGFSDYK 281 (296)
Q Consensus 275 aGf~~~~ 281 (296)
.||.+..
T Consensus 133 ~GY~v~~ 139 (331)
T 3ubt_Y 133 AGYDVHI 139 (331)
T ss_dssp HTEEEEE
T ss_pred CCcEEEE
Confidence 9987543
No 383
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=75.47 E-value=12 Score=27.24 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=40.2
Q ss_pred CEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEeh
Q 022515 132 NSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLK 196 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~ 196 (296)
.+|+=+|+|. ++..+++.. .+.+++++|. ++.++.++ ...+.++.+|..++ ..++|+++..
T Consensus 7 ~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~--~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 7 YEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLE--DEGFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHH--HTTCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHH--HCCCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 5788899854 444444322 2678999998 77766654 23467888998772 2358888764
No 384
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=75.45 E-value=1.8 Score=37.33 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=58.9
Q ss_pred cCCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CC--------CccceeEeh
Q 022515 128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AI--------SPADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~--------p~~D~v~~~ 196 (296)
..++.+||-+|+| .|..+..+++.. +.+++++|. ++-.+.+++.... .++ |..+ +. .++|+++-.
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~-~~~--d~~~~~~~~~~~~~~~~~d~vid~ 237 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGAD-LVV--NPLKEDAAKFMKEKVGGVHAAVVT 237 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCS-EEE--CTTTSCHHHHHHHHHSSEEEEEES
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHCCCC-EEe--cCCCccHHHHHHHHhCCCCEEEEC
Confidence 5677899999964 688888898876 569999997 7666665532111 111 2222 11 357887653
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
- ... ..++.+.++|++ +|+++.+-.
T Consensus 238 ~-----g~~---~~~~~~~~~l~~---~G~~v~~g~ 262 (339)
T 1rjw_A 238 A-----VSK---PAFQSAYNSIRR---GGACVLVGL 262 (339)
T ss_dssp S-----CCH---HHHHHHHHHEEE---EEEEEECCC
T ss_pred C-----CCH---HHHHHHHHHhhc---CCEEEEecc
Confidence 2 221 357788889999 899887654
No 385
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=75.34 E-value=16 Score=26.13 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=48.6
Q ss_pred CCEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhhc
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWILH 200 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vlh 200 (296)
..+|+=+|+| ..+..+++.. .+.+++++|. ++.++...+ ...+.+..+|..++ ..++|+++..-
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~--- 77 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASA-EIDALVINGDCTKIKTLEDAGIEDADMYIAVT--- 77 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HCSSEEEESCTTSHHHHHHTTTTTCSEEEECC---
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-hcCcEEEEcCCCCHHHHHHcCcccCCEEEEee---
Confidence 3578888875 4444443322 2578999998 665554431 12456677776541 23588887752
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
++......+..+.+.+.+ +++++
T Consensus 78 --~~~~~~~~~~~~~~~~~~----~~ii~ 100 (140)
T 1lss_A 78 --GKEEVNLMSSLLAKSYGI----NKTIA 100 (140)
T ss_dssp --SCHHHHHHHHHHHHHTTC----CCEEE
T ss_pred --CCchHHHHHHHHHHHcCC----CEEEE
Confidence 333333345555566776 45554
No 386
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=75.17 E-value=0.7 Score=33.23 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=33.9
Q ss_pred HcCcchhcccCCCCCCHHHHHHHc--CCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSAL--TINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~--~~~~~~l~~~l~~~~~~~ 78 (296)
+..|++.|.+. ++.|+.+||+.+ ++++..+++++......|
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~G 57 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRISKSSVSRRLKKLADHD 57 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 45577788653 799999999999 999999999988877655
No 387
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=74.76 E-value=0.85 Score=30.17 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=33.7
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+-.|++.|.+.+.|+...+||+.+|++-..+...+.+.=.++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEg 62 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKEL 62 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 445777787767899999999999999998887776655554
No 388
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=74.71 E-value=1 Score=33.94 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=33.7
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+..|...|.++ ++.|..|||+++|+++..+.+++..+...|
T Consensus 9 ~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (151)
T 2cyy_A 9 DKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRESG 49 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44567777763 789999999999999999999888877655
No 389
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=74.64 E-value=2.2 Score=37.00 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=60.4
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCC-CCCC-eeEEeccCCCC----C-C-ccceeEeh
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS-DLAN-LKYVGGDMFEA----I-S-PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~r-i~~~~~D~~~~----~-p-~~D~v~~~ 196 (296)
..++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++ ..+. +.....|+.+. . + ++|+++-.
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~ 242 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIA 242 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEEC
Confidence 56778899999775 88888888875 55 7999998 666666664 2221 11111222211 1 2 48988753
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
- ..+ ..++.+.+.|+| ||+++.+-..
T Consensus 243 ~-----g~~---~~~~~~~~~l~~---~G~~v~~G~~ 268 (352)
T 3fpc_A 243 G-----GDV---HTFAQAVKMIKP---GSDIGNVNYL 268 (352)
T ss_dssp S-----SCT---THHHHHHHHEEE---EEEEEECCCC
T ss_pred C-----CCh---HHHHHHHHHHhc---CCEEEEeccc
Confidence 2 221 357788889999 9999887644
No 390
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=74.12 E-value=6.8 Score=33.72 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=58.4
Q ss_pred cCCCCEEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC--CC---------Ccccee
Q 022515 128 FEGLNSLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE--AI---------SPADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~--~~---------p~~D~v 193 (296)
..++.+||-+|+ |.|..+..+++.. +.+++++|. ++-.+.+++..... +. |..+ +. .++|++
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~g~~~-~~--d~~~~~~~~~~~~~~~~~~~D~v 242 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSIGGEV-FI--DFTKEKDIVGAVLKATDGGAHGV 242 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHTTCCE-EE--ETTTCSCHHHHHHHHHTSCEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHcCCce-EE--ecCccHhHHHHHHHHhCCCCCEE
Confidence 567789999997 6788888888876 568988886 65555554322111 11 3321 10 147877
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+... .. ...++.+.+.|++ +|+++++..
T Consensus 243 i~~~-----g~---~~~~~~~~~~l~~---~G~iv~~g~ 270 (347)
T 2hcy_A 243 INVS-----VS---EAAIEASTRYVRA---NGTTVLVGM 270 (347)
T ss_dssp EECS-----SC---HHHHHHHTTSEEE---EEEEEECCC
T ss_pred EECC-----Cc---HHHHHHHHHHHhc---CCEEEEEeC
Confidence 6542 21 1457888899999 899887654
No 391
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=73.91 E-value=1.3 Score=33.88 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=33.7
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+..|...|.+. ++.|..|||+++|+++..+.+++..+...|
T Consensus 12 ~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 52 (162)
T 2p5v_A 12 DIKILQVLQEN-GRLTNVELSERVALSPSPCLRRLKQLEDAG 52 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44567777663 789999999999999999999888877665
No 392
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=73.90 E-value=0.95 Score=30.23 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=33.8
Q ss_pred HHcCcchhcccCC-CCCCHHHHHHHc-----CCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHG-KPMTLNELVSAL-----TINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~-~~~t~~eLA~~~-----~~~~~~l~~~l~~~~~~~ 78 (296)
-+..|++.|.+.+ ++.|+.||++.+ +++..-+.|.|..+...|
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3455788887543 589999999999 899888888887776654
No 393
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=73.86 E-value=0.7 Score=39.24 Aligned_cols=92 Identities=17% Similarity=0.079 Sum_probs=57.1
Q ss_pred cCCCCEEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEe---ccCCCCCCccceeEehhhhcc
Q 022515 128 FEGLNSLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVG---GDMFEAISPADAVLLKWILHD 201 (296)
Q Consensus 128 ~~~~~~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~---~D~~~~~p~~D~v~~~~vlh~ 201 (296)
.+++.+||-+|+ |.|..+..+++.. +.++++.+. ++-.+.+++......+-. .|+.+...++|+++- - -
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~-g-- 197 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-V-R-- 197 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-C-S--
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-C-C--
Confidence 456789999996 6788888998886 569999987 665555543221111111 112112245888875 2 1
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
. ..++.+.+.|++ +|+++.+-..
T Consensus 198 --~----~~~~~~~~~l~~---~G~~v~~g~~ 220 (302)
T 1iz0_A 198 --G----KEVEESLGLLAH---GGRLVYIGAA 220 (302)
T ss_dssp --C----TTHHHHHTTEEE---EEEEEEC---
T ss_pred --H----HHHHHHHHhhcc---CCEEEEEeCC
Confidence 1 236778889999 8998876543
No 394
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=73.81 E-value=1.3 Score=34.39 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=35.2
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.+..|...|.+. ++.|..|||+++|+++..+.+++..+...|
T Consensus 28 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 28 IDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 455677888763 789999999999999999999888887766
No 395
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=72.88 E-value=1.2 Score=33.55 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=33.6
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+..|+..|.+. ++.|..|||+++|+++..+.+++..+...|
T Consensus 10 d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 50 (152)
T 2cg4_A 10 DRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQAG 50 (152)
T ss_dssp HHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 44567777763 789999999999999999999888877655
No 396
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=72.69 E-value=1.3 Score=33.36 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=34.1
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.+..|+..|.+. ++.|..|||+++|+++..+.+.+..+...|
T Consensus 10 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 51 (151)
T 2dbb_A 10 VDMQLVKILSEN-SRLTYRELADILNTTRQRIARRIDKLKKLG 51 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 345577778763 789999999999999999998888777655
No 397
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=72.61 E-value=2.4 Score=36.93 Aligned_cols=93 Identities=17% Similarity=0.126 Sum_probs=60.7
Q ss_pred cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEe--ccCCCC----C-CccceeEehh
Q 022515 128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVG--GDMFEA----I-SPADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~D~~~~----~-p~~D~v~~~~ 197 (296)
.+++.+||-+| ||.|..+..+++.. +.++++.+. ++-.+.+++......+.. .|+.+. . .++|+++-.-
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~ 239 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESV 239 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECC
Confidence 56778999999 78899999999987 668999987 666665553221111111 111110 1 2478887542
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
.. ..++.+.++|++ +|+++++-..
T Consensus 240 -----g~----~~~~~~~~~l~~---~G~iv~~g~~ 263 (362)
T 2c0c_A 240 -----GG----AMFDLAVDALAT---KGRLIVIGFI 263 (362)
T ss_dssp -----CT----HHHHHHHHHEEE---EEEEEECCCG
T ss_pred -----CH----HHHHHHHHHHhc---CCEEEEEeCC
Confidence 11 357788899999 8998887654
No 398
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=72.23 E-value=7.7 Score=33.72 Aligned_cols=92 Identities=15% Similarity=0.081 Sum_probs=58.3
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCC-CCCCeeEEec----cCCCC-----CCccceeE
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS-DLANLKYVGG----DMFEA-----ISPADAVL 194 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~ri~~~~~----D~~~~-----~p~~D~v~ 194 (296)
..++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++ ..+.+ +... |+.+. ..++|+++
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~v~~~~~~g~D~vi 265 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEFGATEC-INPQDFSKPIQEVLIEMTDGGVDYSF 265 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHHTCSEE-ECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCceE-eccccccccHHHHHHHHhCCCCCEEE
Confidence 56778999999765 88888888876 55 7888886 666666554 22211 1111 11110 12588887
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKK-GKVIIIDM 232 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~g-G~lli~e~ 232 (296)
-.- .. ...++.+.++|+| + |+++++-.
T Consensus 266 d~~-----g~---~~~~~~~~~~l~~---~~G~iv~~G~ 293 (373)
T 2fzw_A 266 ECI-----GN---VKVMRAALEACHK---GWGVSVVVGV 293 (373)
T ss_dssp ECS-----CC---HHHHHHHHHTBCT---TTCEEEECSC
T ss_pred ECC-----Cc---HHHHHHHHHhhcc---CCcEEEEEec
Confidence 532 11 1357788899999 9 99887764
No 399
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=72.20 E-value=16 Score=28.87 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=50.9
Q ss_pred EEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhhccC
Q 022515 133 SLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWILHDW 202 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vlh~~ 202 (296)
+|+=+|+ |.++..+++.. .+..++++|. ++.++... ....+.++.+|..++ ..++|++++.-
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~-~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~----- 73 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFA-KKLKATIIHGDGSHKEILRDAEVSKNDVVVILT----- 73 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-HHSSSEEEESCTTSHHHHHHHTCCTTCEEEECC-----
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH-HHcCCeEEEcCCCCHHHHHhcCcccCCEEEEec-----
Confidence 4666775 66666655533 3678999998 77666533 122467889998872 23589888742
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
+++..-.++....+.+.| ..+++.
T Consensus 74 ~~d~~n~~~~~~a~~~~~---~~~iia 97 (218)
T 3l4b_C 74 PRDEVNLFIAQLVMKDFG---VKRVVS 97 (218)
T ss_dssp SCHHHHHHHHHHHHHTSC---CCEEEE
T ss_pred CCcHHHHHHHHHHHHHcC---CCeEEE
Confidence 333333444555555554 355443
No 400
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=72.14 E-value=3.2 Score=35.58 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=60.5
Q ss_pred cCCCCEEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhcc-CCCCCCeeEEe--ccCCCC----CC-ccceeEeh
Q 022515 128 FEGLNSLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGL-DSDLANLKYVG--GDMFEA----IS-PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~~~~ri~~~~--~D~~~~----~p-~~D~v~~~ 196 (296)
..++.+||-+|+ |.|..+..+++.. +.++++.+. ++-.+.+ ++......+.. .|+.+. .+ ++|+++-.
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 225 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDN 225 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEEC
Confidence 667889999997 6788888888876 569999997 7666666 43221111111 111110 12 47887653
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
- .. ..++.+.+.|++ ||+++++-...
T Consensus 226 ~-----g~----~~~~~~~~~l~~---~G~iv~~G~~~ 251 (336)
T 4b7c_A 226 V-----GG----EILDTVLTRIAF---KARIVLCGAIS 251 (336)
T ss_dssp S-----CH----HHHHHHHTTEEE---EEEEEECCCGG
T ss_pred C-----Cc----chHHHHHHHHhh---CCEEEEEeecc
Confidence 2 21 357888899999 89988876443
No 401
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=71.87 E-value=14 Score=28.86 Aligned_cols=95 Identities=14% Similarity=0.196 Sum_probs=55.0
Q ss_pred EEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC----CCccceeEehhhhccCCch
Q 022515 133 SLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA----ISPADAVLLKWILHDWNDE 205 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~----~p~~D~v~~~~vlh~~~d~ 205 (296)
+||=.| |+|....++++.+ .+.++++++. +.-.+.. . .+++++.+|+.++ +.+.|+++..--.......
T Consensus 2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~ 77 (221)
T 3ew7_A 2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT--H-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAE 77 (221)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH--C-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTT
T ss_pred eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc--c-CCCeEEeccccChhhhhhcCCCEEEECCcCCccccc
Confidence 455554 4555555554432 2578888887 5444332 1 6789999999873 2357888765433222222
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 206 ECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 206 ~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
......+++.++++.. ..++++++..
T Consensus 78 ~~~~~~~~l~~a~~~~-~~~~~v~~SS 103 (221)
T 3ew7_A 78 KHVTSLDHLISVLNGT-VSPRLLVVGG 103 (221)
T ss_dssp SHHHHHHHHHHHHCSC-CSSEEEEECC
T ss_pred hHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 2345667777777652 1357776654
No 402
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=71.56 E-value=1.1 Score=31.08 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=33.1
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.|+..|... ++.|..+||+.+|+++..+.+.+..+...|
T Consensus 21 ~~~~il~~l~~~-~~~s~~ela~~l~is~~tv~~~l~~L~~~g 62 (109)
T 1sfx_A 21 SDVRIYSLLLER-GGMRVSEIARELDLSARFVRDRLKVLLKRG 62 (109)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 345556666542 689999999999999999999888877655
No 403
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=71.44 E-value=1.6 Score=33.86 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=34.4
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.+..|...|..+ ++.|..|||+++|+++..+.+.+..+...|
T Consensus 18 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~~l~~L~~~G 59 (171)
T 2ia0_A 18 LDRNILRLLKKD-ARLTISELSEQLKKPESTIHFRIKKLQERG 59 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 344577788763 789999999999999999999888877665
No 404
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=71.43 E-value=1.4 Score=37.01 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=31.5
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|+++|++.++++|+.|||+++|++..-+.|.|..+...|
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G 73 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELD 73 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45778887654689999999999999999999887776544
No 405
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=71.28 E-value=1.5 Score=37.92 Aligned_cols=93 Identities=13% Similarity=0.174 Sum_probs=56.9
Q ss_pred cCCCCEEEEecCC--chHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCe-eEEeccCCCC----C--CccceeEeh
Q 022515 128 FEGLNSLVDVGGG--IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANL-KYVGGDMFEA----I--SPADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri-~~~~~D~~~~----~--p~~D~v~~~ 196 (296)
..++.+||-+|+| .|..+..+++.. +.+++++|. ++-.+.+++ ..+.+ .....|+.+. . .++|+++-.
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~ 220 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDS 220 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEEC
Confidence 6678899999976 788888888876 669999887 665555554 22211 1111111110 1 148888763
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
- ..+. +....+.|++ ||+++++-..
T Consensus 221 ~-----g~~~----~~~~~~~l~~---~G~iv~~G~~ 245 (340)
T 3gms_A 221 I-----GGPD----GNELAFSLRP---NGHFLTIGLL 245 (340)
T ss_dssp S-----CHHH----HHHHHHTEEE---EEEEEECCCT
T ss_pred C-----CChh----HHHHHHHhcC---CCEEEEEeec
Confidence 2 2222 2334478999 8999887653
No 406
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=71.26 E-value=3 Score=37.42 Aligned_cols=58 Identities=22% Similarity=0.382 Sum_probs=37.1
Q ss_pred ccCchHHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC-----CCeEEeccc
Q 022515 96 GDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP-----KLECTCFDL 162 (296)
Q Consensus 96 ~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p-----~~~~~~~D~ 162 (296)
-..|+....|.+.++... ...+. ..+..+|+|+|+|+|.++..+++... ..++++++.
T Consensus 112 iTAPeiS~~FGe~la~~~-------~~~~~--~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~ 174 (432)
T 4f3n_A 112 VTAPELSPLFAQTLARPV-------AQALD--ASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDL 174 (432)
T ss_dssp SSCGGGHHHHHHHHHHHH-------HHHHH--HHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECT
T ss_pred cCchhhhHHHHHHHHHHH-------HHHHH--hcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 345666666766554332 11111 11246999999999999988876431 237899988
No 407
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=71.21 E-value=3.7 Score=35.28 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=34.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS 171 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 171 (296)
.++..|||-=||+|..+.+..+. +.+++++|+ |..++.+++
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~ 292 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAF 292 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHH
Confidence 46689999999999999887776 679999999 887777653
No 408
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=71.13 E-value=4.4 Score=30.88 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=39.7
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCC
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE 185 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~ 185 (296)
.+-|||+|=|+|..=-+|.+.+|+-++.++|..-.+--.. ..+.=.++.||+.+
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~-~P~~e~~ilGdi~~ 94 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDS-TPPEAQLILGDIRE 94 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGG-CCCGGGEEESCHHH
T ss_pred CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCC-CCchHheecccHHH
Confidence 4679999999999999999999999999999521111111 22334677788876
No 409
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=70.94 E-value=4.5 Score=34.77 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=57.9
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCC--eeEEeccCCCC----CC--ccceeEehh
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLAN--LKYVGGDMFEA----IS--PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~r--i~~~~~D~~~~----~p--~~D~v~~~~ 197 (296)
..++.+||=+|+|. |.++..++++.-..+++++|. ++-.+.+++.... +.....|+.+. .. ++|.++...
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~ 240 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCA 240 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEec
Confidence 56778999999876 456666777777889999998 6656666542222 22222232221 11 356665432
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
. . ...+....+.+++ +|+++++-
T Consensus 241 ~-----~---~~~~~~~~~~l~~---~G~~v~~g 263 (348)
T 4eez_A 241 V-----A---RIAFEQAVASLKP---MGKMVAVA 263 (348)
T ss_dssp S-----C---HHHHHHHHHTEEE---EEEEEECC
T ss_pred c-----C---cchhheeheeecC---CceEEEEe
Confidence 1 1 2457788899999 89988765
No 410
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=69.90 E-value=40 Score=26.81 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=52.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHCC--CCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFP--KLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWIL 199 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vl 199 (296)
...+|+=+|+ |..+..+++... +. ++++|. ++.++.+. ..+.++.+|..++ ..++|++++..
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~---~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~-- 79 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR---SGANFVHGDPTRVSDLEKANVRGARAVIVDL-- 79 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH---TTCEEEESCTTCHHHHHHTTCTTCSEEEECC--
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh---cCCeEEEcCCCCHHHHHhcCcchhcEEEEcC--
Confidence 3467888887 567777777653 34 888888 66665553 4588999998762 23588888742
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
+++..-.......+.+.| +.+++.
T Consensus 80 ---~~d~~n~~~~~~a~~~~~---~~~iia 103 (234)
T 2aef_A 80 ---ESDSETIHCILGIRKIDE---SVRIIA 103 (234)
T ss_dssp ---SCHHHHHHHHHHHHHHCS---SSEEEE
T ss_pred ---CCcHHHHHHHHHHHHHCC---CCeEEE
Confidence 333322334444555676 445554
No 411
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=69.47 E-value=4 Score=33.13 Aligned_cols=65 Identities=12% Similarity=0.011 Sum_probs=41.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc---hhHhhccCCCCCCeeEEeccCCC-CCCccceeEeh
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL---PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLK 196 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~ 196 (296)
.+.+||=||||.-.....-.-.--+.++++++. ++..+.+ ...+++++.+++.. .+.++|+|+..
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~--~~~~i~~i~~~~~~~dL~~adLVIaA 98 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWE--AKGQLRVKRKKVGEEDLLNVFFIVVA 98 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHH--HTTSCEEECSCCCGGGSSSCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH--HcCCcEEEECCCCHhHhCCCCEEEEC
Confidence 457899999986555433211112667888774 2222222 34678888888876 56779999875
No 412
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=68.93 E-value=14 Score=33.73 Aligned_cols=123 Identities=11% Similarity=0.117 Sum_probs=73.2
Q ss_pred CCEEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCC---CCCCeeEEeccCCC-C------------------
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-A------------------ 186 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~------------------ 186 (296)
..+++|+=||.|.++..+.+. +.+ +..+|. +..++.-+. ......+..+|+.+ .
T Consensus 88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~ 165 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ 165 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhh
Confidence 468999999999999988775 444 567788 665544332 12334556677654 2
Q ss_pred -CCccceeEehhhhccCCchH-----------------HHHHHHH---HHHhcccCCCCcEEEEEeeeeCCCCCCCchhh
Q 022515 187 -ISPADAVLLKWILHDWNDEE-----------------CVKILKK---CKEAITSDGKKGKVIIIDMIRENKKGDDKSIE 245 (296)
Q Consensus 187 -~p~~D~v~~~~vlh~~~d~~-----------------~~~iL~~---~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~ 245 (296)
.|.+|+++...-...|+-.. .-.++.. +.+.++| +++++|.+..-...
T Consensus 166 ~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rP-----k~fvlENV~gl~s~------ 234 (482)
T 3me5_A 166 HIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP-----AMFVLENVKNLKSH------ 234 (482)
T ss_dssp HSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCC-----SEEEEEEETTTTTG------
T ss_pred cCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCC-----cEEEEeCcHHHhcc------
Confidence 24589888776666555211 0013333 3344566 67888876532110
Q ss_pred hhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515 246 TQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY 280 (296)
Q Consensus 246 ~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 280 (296)
.+..+.+.+.+.|++.||.+.
T Consensus 235 --------------~~g~~f~~i~~~L~~lGY~v~ 255 (482)
T 3me5_A 235 --------------DKGKTFRIIMQTLDELGYDVA 255 (482)
T ss_dssp --------------GGGHHHHHHHHHHHHTTEEET
T ss_pred --------------cCCcHHHHHHHHHhcCCcEEE
Confidence 111245678888899998764
No 413
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=68.78 E-value=15 Score=26.96 Aligned_cols=40 Identities=8% Similarity=0.233 Sum_probs=31.6
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++.++..| . .++.|..+||+.+++++..+.+.+......|
T Consensus 40 q~~iL~~l-~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~G 79 (151)
T 3kp7_A 40 QSHVLNML-S-IEALTVGQITEKQGVNKAAVSRRVKKLLNAE 79 (151)
T ss_dssp HHHHHHHH-H-HSCBCHHHHHHHHCSCSSHHHHHHHHHHHTT
T ss_pred HHHHHHHH-H-cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 44477777 4 3799999999999999999998777665544
No 414
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=68.30 E-value=1.7 Score=34.83 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=36.9
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.+|..-.++.|+..|.. +|.|+.+||+.+|+++..+.++|......|
T Consensus 10 kaL~~~~rl~IL~~L~~--~~~s~~eLa~~l~is~stvs~hLk~Le~~G 56 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK--RPYFVSELSRELGVGQKAVLEHLRILEEAG 56 (202)
T ss_dssp HHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44555566677777765 799999999999999999999888766543
No 415
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=68.27 E-value=1.8 Score=32.04 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=32.4
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+..|...|... ++.|..|||+.+|+++..+.+.+..+...|
T Consensus 6 ~~~il~~L~~~-~~~~~~ela~~lg~s~~tv~~~l~~L~~~G 46 (141)
T 1i1g_A 6 DKIILEILEKD-ARTPFTEIAKKLGISETAVRKRVKALEEKG 46 (141)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34466667653 689999999999999999998888776654
No 416
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=67.75 E-value=37 Score=30.84 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=59.9
Q ss_pred CCCEEEEecCCchHHHHHH-HHHCCCC-eEEeccc-hh----HhhccCCC--------------------CCCeeEEecc
Q 022515 130 GLNSLVDVGGGIGTAAKAI-AKAFPKL-ECTCFDL-PH----VVNGLDSD--------------------LANLKYVGGD 182 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l-~~~~p~~-~~~~~D~-~~----~~~~a~~~--------------------~~ri~~~~~D 182 (296)
+..+|.=||.|.=....+. +...|+. +++++|+ ++ .++...+. ..++.+. .|
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~t-td 95 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECT-PD 95 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEE-SC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEe-Cc
Confidence 4568999998875444332 2333467 9999999 77 55443321 2344443 23
Q ss_pred CCCCCCccceeEehhhhcc-------CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCC
Q 022515 183 MFEAISPADAVLLKWILHD-------WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKK 238 (296)
Q Consensus 183 ~~~~~p~~D~v~~~~vlh~-------~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~ 238 (296)
.+...++|+|++.---.. .+-.......+.+.+.|+| |.++|.+...+...
T Consensus 96 -~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~----g~iVV~~STv~pgt 153 (478)
T 3g79_A 96 -FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKP----GMLVVLESTITPGT 153 (478)
T ss_dssp -GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCT----TCEEEECSCCCTTT
T ss_pred -HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCC----CcEEEEeCCCChHH
Confidence 233446898887422111 1112345667888899998 66777776655443
No 417
>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*
Probab=67.69 E-value=4.6 Score=36.42 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=62.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC-----CCCCeeEEeccCCCCCCccceeEehhhhccCCc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-----DLANLKYVGGDMFEAISPADAVLLKWILHDWND 204 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d 204 (296)
.+++|.=||+|+=..+.++--+-.++.+++-=.+.......+ ..+..+ .+++.+..+.+|+|++- .||
T Consensus 36 kgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~--v~~~~eA~~~ADvV~~L-----~PD 108 (491)
T 3ulk_A 36 QGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK--VGTYEELIPQADLVINL-----TPD 108 (491)
T ss_dssp TTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCE--EEEHHHHGGGCSEEEEC-----SCG
T ss_pred cCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCE--ecCHHHHHHhCCEEEEe-----CCh
Confidence 468999999999988888877777887655433443221111 233333 33444445578999873 588
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+....+.+.+...|+| |..|.+..
T Consensus 109 ~~q~~vy~~I~p~lk~---G~~L~faH 132 (491)
T 3ulk_A 109 KQHSDVVRTVQPLMKD---GAALGYSH 132 (491)
T ss_dssp GGHHHHHHHHGGGSCT---TCEEEESS
T ss_pred hhHHHHHHHHHhhCCC---CCEEEecC
Confidence 8888999999999999 66666654
No 418
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=67.28 E-value=18 Score=30.80 Aligned_cols=93 Identities=14% Similarity=0.076 Sum_probs=59.3
Q ss_pred cCCCCEEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhccC-CCCCCeeEEec---cCCCC----C-CccceeEe
Q 022515 128 FEGLNSLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLD-SDLANLKYVGG---DMFEA----I-SPADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~~~~ri~~~~~---D~~~~----~-p~~D~v~~ 195 (296)
..++.+||-+|+ |.|..+..+++.. +.++++.+. ++-.+.++ +......+-.. |+.+. . .++|+++-
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~ 231 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFE 231 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEE
Confidence 567789999995 7888888888876 568999887 66666554 22211111111 11110 1 24788775
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
.- .. ..++.+.+.|++ ||+++++-..
T Consensus 232 ~~-----g~----~~~~~~~~~l~~---~G~~v~~G~~ 257 (345)
T 2j3h_A 232 NV-----GG----KMLDAVLVNMNM---HGRIAVCGMI 257 (345)
T ss_dssp SS-----CH----HHHHHHHTTEEE---EEEEEECCCG
T ss_pred CC-----CH----HHHHHHHHHHhc---CCEEEEEccc
Confidence 32 11 357888899999 8999887543
No 419
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}
Probab=67.26 E-value=6.1 Score=33.98 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=59.1
Q ss_pred cCCCCEEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-C--------C--Cccce
Q 022515 128 FEGLNSLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-A--------I--SPADA 192 (296)
Q Consensus 128 ~~~~~~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~--------~--p~~D~ 192 (296)
+.++.+||-+|+ |.|..+..+++.. +.++++.+. ++-.+.+++ ..+. ++ |..+ + . .++|+
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~ga~~--~~--d~~~~~~~~~~~~~~~~~~~d~ 238 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKALGADE--TV--NYTHPDWPKEVRRLTGGKGADK 238 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCSE--EE--ETTSTTHHHHHHHHTTTTCEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCCE--EE--cCCcccHHHHHHHHhCCCCceE
Confidence 567789999996 7899999999876 568999887 666665543 2221 11 2211 1 1 24788
Q ss_pred eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
++-.-- . ..++.+.++|++ +|+++.+...
T Consensus 239 vi~~~g-----~----~~~~~~~~~l~~---~G~~v~~g~~ 267 (343)
T 2eih_A 239 VVDHTG-----A----LYFEGVIKATAN---GGRIAIAGAS 267 (343)
T ss_dssp EEESSC-----S----SSHHHHHHHEEE---EEEEEESSCC
T ss_pred EEECCC-----H----HHHHHHHHhhcc---CCEEEEEecC
Confidence 876432 1 246778888999 8998877654
No 420
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=67.25 E-value=1.3 Score=36.95 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=32.9
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|+++|.+.++++|+.|||+++|++..-+.|.|......|
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G 49 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAG 49 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34777787544689999999999999999999887776544
No 421
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=66.92 E-value=2 Score=35.36 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=32.1
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|++.|.+.+++.|+.|||+++|++...+.|.|..+...|
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G 51 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKG 51 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34566776543589999999999999999999887766544
No 422
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=66.78 E-value=2.9 Score=35.89 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=59.6
Q ss_pred cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEe--ccCCCC----C-C-ccceeEeh
Q 022515 128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVG--GDMFEA----I-S-PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~D~~~~----~-p-~~D~v~~~ 196 (296)
..++.+||-+| ||.|..+..+++.. +.++++++. ++-.+.+++......+.. .|+.+. . + ++|+++-.
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~ 224 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDS 224 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEEC
Confidence 56788999999 57788888888876 679999998 766666654221111111 111110 1 2 48888763
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
-- . ..++.+.+.|+| ||+++++-.
T Consensus 225 ~g-----~----~~~~~~~~~l~~---~G~iv~~G~ 248 (334)
T 3qwb_A 225 VG-----K----DTFEISLAALKR---KGVFVSFGN 248 (334)
T ss_dssp CG-----G----GGHHHHHHHEEE---EEEEEECCC
T ss_pred CC-----h----HHHHHHHHHhcc---CCEEEEEcC
Confidence 21 1 246778888999 899888754
No 423
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=66.26 E-value=1.7 Score=37.22 Aligned_cols=93 Identities=14% Similarity=0.036 Sum_probs=59.3
Q ss_pred cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEe--ccCCCC----C--CccceeEeh
Q 022515 128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVG--GDMFEA----I--SPADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~D~~~~----~--p~~D~v~~~ 196 (296)
.+++.+||-+| ||.|..+..+++.. +.++++.+. ++-.+.+++......+.. .|+.+. . .++|+++-.
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~ 216 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDG 216 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEES
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEEC
Confidence 56788999998 57788888888875 669999887 666666654111111111 111110 1 148888753
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
- .. ..+..+.+.|++ ||+++++-..
T Consensus 217 ~-----g~----~~~~~~~~~l~~---~G~iv~~g~~ 241 (325)
T 3jyn_A 217 V-----GQ----DTWLTSLDSVAP---RGLVVSFGNA 241 (325)
T ss_dssp S-----CG----GGHHHHHTTEEE---EEEEEECCCT
T ss_pred C-----Ch----HHHHHHHHHhcC---CCEEEEEecC
Confidence 2 22 246678889999 8999887654
No 424
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=65.84 E-value=17 Score=33.04 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=55.4
Q ss_pred CCCCEEEEecCCchHH--HHHHHHHCCCCeEEeccc-hhHhhccCCC------------------CCCeeEEeccCCCCC
Q 022515 129 EGLNSLVDVGGGIGTA--AKAIAKAFPKLECTCFDL-PHVVNGLDSD------------------LANLKYVGGDMFEAI 187 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~--~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~ri~~~~~D~~~~~ 187 (296)
.+..+|.=||+|.=.. +..|++. +.+++++|. ++.++..++. ..++.+. .|..+..
T Consensus 6 ~~~~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t-td~~~a~ 82 (478)
T 2y0c_A 6 HGSMNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS-TDIEAAV 82 (478)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-CCHHHHH
T ss_pred CCCceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE-CCHHHHh
Confidence 3567899999885333 3334443 568999998 7766655431 1123322 1211112
Q ss_pred CccceeEehhhh-----ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 188 SPADAVLLKWIL-----HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 188 p~~D~v~~~~vl-----h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
..+|+|++.--- ...+......+++.+.+.++| |.+++.....
T Consensus 83 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~----~~iVV~~STv 130 (478)
T 2y0c_A 83 AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTG----FKVIVDKSTV 130 (478)
T ss_dssp HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS----CEEEEECSCC
T ss_pred hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCC----CCEEEEeCCc
Confidence 347888774210 000114566788889999998 6666665443
No 425
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=65.66 E-value=2.3 Score=35.30 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=32.0
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|++.|...+++.|+.|||+++|++..-+.|.|..+...|
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G 66 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARS 66 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34567776433689999999999999999999887766544
No 426
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=65.59 E-value=46 Score=26.92 Aligned_cols=100 Identities=12% Similarity=0.150 Sum_probs=57.3
Q ss_pred CCEEEEecCC----chH-HHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC--C----------
Q 022515 131 LNSLVDVGGG----IGT-AAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA--I---------- 187 (296)
Q Consensus 131 ~~~vLDvGgG----~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~--~---------- 187 (296)
++++|=.|++ .|. ++..|+++ +.++++.+. +...+...+ ...++.++..|+.++ .
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ 84 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence 4678888865 343 34445554 678888876 332222211 234799999999873 1
Q ss_pred -CccceeEehhhh----------ccCCchHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 188 -SPADAVLLKWIL----------HDWNDEECV-----------KILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 188 -p~~D~v~~~~vl----------h~~~d~~~~-----------~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
+..|+++..--. .+.+.++.. .+++.+.+.|++ +|+|+.+-....
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~g~iv~isS~~~ 151 (266)
T 3oig_A 85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTE---GGSIVTLTYLGG 151 (266)
T ss_dssp HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT---CEEEEEEECGGG
T ss_pred hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCC---CceEEEEecccc
Confidence 235777654322 223333222 255666677776 788888776544
No 427
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=65.43 E-value=32 Score=26.15 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=48.4
Q ss_pred CCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC--------CCccceeEehhhhc
Q 022515 131 LNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA--------ISPADAVLLKWILH 200 (296)
Q Consensus 131 ~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~--------~p~~D~v~~~~vlh 200 (296)
..+|+=+|+|. |......+.+..+.+++++|. ++.++.+++ ..+.++.+|..++ ..++|+++..-
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~--~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~--- 113 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS--EGRNVISGDATDPDFWERILDTGHVKLVLLAM--- 113 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH--TTCCEEECCTTCHHHHHTBCSCCCCCEEEECC---
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH--CCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC---
Confidence 45788888764 333333333321468999998 776665542 2356677776541 23588887732
Q ss_pred cCC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 201 DWN-DEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 201 ~~~-d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
+ ++....++. ..+.+.| +.+++.
T Consensus 114 --~~~~~~~~~~~-~~~~~~~---~~~ii~ 137 (183)
T 3c85_A 114 --PHHQGNQTALE-QLQRRNY---KGQIAA 137 (183)
T ss_dssp --SSHHHHHHHHH-HHHHTTC---CSEEEE
T ss_pred --CChHHHHHHHH-HHHHHCC---CCEEEE
Confidence 3 333333333 4445565 556554
No 428
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=65.01 E-value=20 Score=32.33 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=53.8
Q ss_pred CEEEEecCCchHHH--HHHHHHCCCCeEEeccc-hhHhhccCCC------------------CCCeeEEeccCCCCCCcc
Q 022515 132 NSLVDVGGGIGTAA--KAIAKAFPKLECTCFDL-PHVVNGLDSD------------------LANLKYVGGDMFEAISPA 190 (296)
Q Consensus 132 ~~vLDvGgG~G~~~--~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~ri~~~~~D~~~~~p~~ 190 (296)
.+|.=||+|.=... ..|++. +.+++++|. ++.++...+. ..++++. .|..+...++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea~~~a 79 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQAVPEA 79 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHHGGGC
T ss_pred CEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHHHhcC
Confidence 36777887653333 223333 568999999 7665543320 2334432 2222223458
Q ss_pred ceeEehhhhc-----cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 191 DAVLLKWILH-----DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 191 D~v~~~~vlh-----~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
|+|++.---. ..+-.....+++.+.+.+++ |.++|.....+
T Consensus 80 DvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~----g~iVV~~STv~ 125 (450)
T 3gg2_A 80 DIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSR----YILIVTKSTVP 125 (450)
T ss_dssp SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS----CEEEEECSCCC
T ss_pred CEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCC----CCEEEEeeeCC
Confidence 8887742110 00011566788999999987 77777766443
No 429
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=65.00 E-value=1.3 Score=38.63 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=57.3
Q ss_pred cCCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCe-eEEec-cCCCCC-CccceeEehhhhcc
Q 022515 128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANL-KYVGG-DMFEAI-SPADAVLLKWILHD 201 (296)
Q Consensus 128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri-~~~~~-D~~~~~-p~~D~v~~~~vlh~ 201 (296)
..++.+||-+|+| .|.++..+++.. +.+++++|. ++-.+.+++ ..+.+ ..... |+.+.. .++|+++-.---
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~-- 253 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS-- 253 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCC--
Confidence 6678899999964 488888888875 668888886 665555543 22211 11111 221212 358888753211
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 202 WNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.+ + ..++.+.+.|++ ||+++.+-.
T Consensus 254 ~~-~---~~~~~~~~~l~~---~G~iv~~g~ 277 (360)
T 1piw_A 254 LT-D---IDFNIMPKAMKV---GGRIVSISI 277 (360)
T ss_dssp ST-T---CCTTTGGGGEEE---EEEEEECCC
T ss_pred Cc-H---HHHHHHHHHhcC---CCEEEEecC
Confidence 00 1 235567788999 899887654
No 430
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=64.99 E-value=9.7 Score=33.01 Aligned_cols=92 Identities=18% Similarity=0.128 Sum_probs=60.2
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEec---cCCCC-----CC-ccceeEe
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGG---DMFEA-----IS-PADAVLL 195 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~---D~~~~-----~p-~~D~v~~ 195 (296)
++++.+||-+|+|. |.++..+++.. +.+++++|. ++-.+.+++ ..+.+ +.. |+.+. .. ++|+++-
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~v~~~~~g~g~D~vid 263 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFALGADHG--INRLEEDWVERVYALTGDRGADHILE 263 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHcCCCEE--EcCCcccHHHHHHHHhCCCCceEEEE
Confidence 56788999999765 88888888876 679999997 666666654 22221 211 11111 11 5888876
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
.-- . ..++.+.+.|+| ||+++++....
T Consensus 264 ~~g-----~----~~~~~~~~~l~~---~G~iv~~G~~~ 290 (363)
T 3uog_A 264 IAG-----G----AGLGQSLKAVAP---DGRISVIGVLE 290 (363)
T ss_dssp ETT-----S----SCHHHHHHHEEE---EEEEEEECCCS
T ss_pred CCC-----h----HHHHHHHHHhhc---CCEEEEEecCC
Confidence 432 1 236677888999 99999886543
No 431
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1
Probab=64.26 E-value=3.8 Score=35.54 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=57.6
Q ss_pred cCCCCEEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec--cCCCC------CCccceeEeh
Q 022515 128 FEGLNSLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG--DMFEA------ISPADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--D~~~~------~p~~D~v~~~ 196 (296)
+.++.+||-.|+ |.|..+..+++.. +.++++.+. ++-.+.+++......+-.. ++.+. ..++|+++-.
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~ 246 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 246 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEEC
Confidence 567789999995 7788888888876 578998887 6655555432211111111 11110 1147888754
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
-- . ..+..+.+.|++ +|+++++-.
T Consensus 247 ~G-----~----~~~~~~~~~l~~---~G~iv~~g~ 270 (351)
T 1yb5_A 247 LA-----N----VNLSKDLSLLSH---GGRVIVVGS 270 (351)
T ss_dssp CH-----H----HHHHHHHHHEEE---EEEEEECCC
T ss_pred CC-----h----HHHHHHHHhccC---CCEEEEEec
Confidence 22 1 246778889999 899887763
No 432
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=64.22 E-value=2.5 Score=35.06 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=32.2
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|++.|...+++.|+.|||+++|++..-+.|.|..+...|
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G 57 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLG 57 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34567776434689999999999999999999887766544
No 433
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=63.56 E-value=26 Score=28.75 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=45.6
Q ss_pred EEEEecCCc-hHH-HHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHH
Q 022515 133 SLVDVGGGI-GTA-AKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVK 209 (296)
Q Consensus 133 ~vLDvGgG~-G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~ 209 (296)
+|.=||+|. |.. +..|.+. +.+++++|. ++.++.+.+..-... ...|..+. .++|+|++. .+......
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~-~~~D~vi~a-----v~~~~~~~ 72 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDE-AGQDLSLL-QTAKIIFLC-----TPIQLILP 72 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSE-EESCGGGG-TTCSEEEEC-----SCHHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHhCCCCcc-ccCCHHHh-CCCCEEEEE-----CCHHHHHH
Confidence 577788775 322 2333333 458888998 666655432111111 12233323 468998884 35556667
Q ss_pred HHHHHHHhccc
Q 022515 210 ILKKCKEAITS 220 (296)
Q Consensus 210 iL~~~~~aL~p 220 (296)
+++++...++|
T Consensus 73 ~~~~l~~~~~~ 83 (279)
T 2f1k_A 73 TLEKLIPHLSP 83 (279)
T ss_dssp HHHHHGGGSCT
T ss_pred HHHHHHhhCCC
Confidence 88888888887
No 434
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=63.35 E-value=3 Score=29.29 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=29.2
Q ss_pred cchhcccCCCCCCHHHHHHHc-CCCCcchhhhHHHhhhcC
Q 022515 40 IPDIISKHGKPMTLNELVSAL-TINPSKSRCQLRTWFQND 78 (296)
Q Consensus 40 lf~~L~~~~~~~t~~eLA~~~-~~~~~~l~~~l~~~~~~~ 78 (296)
|...|.+ ++.++.|||+.+ ++++..+.+.|......|
T Consensus 19 IL~~L~~--~~~~~~eLa~~l~~is~~tls~~L~~Le~~G 56 (107)
T 2hzt_A 19 ILXHLTH--GKKRTSELKRLMPNITQKMLTQQLRELEADG 56 (107)
T ss_dssp HHHHHTT--CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHh--CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 3344443 789999999999 999999999888776554
No 435
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=63.24 E-value=2.1 Score=35.19 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=31.9
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|++.|.+.+++.|+.|||+++|++...+.|.|......|
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G 49 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEF 49 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34566776543579999999999999999998887776544
No 436
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=63.08 E-value=44 Score=28.28 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=47.7
Q ss_pred CEEEEecCCc-hH-HHHHHHHHCCC-CeEEeccc-h-------hHhhccCCCCCCeeEEec-cCCCCCCccceeEehhhh
Q 022515 132 NSLVDVGGGI-GT-AAKAIAKAFPK-LECTCFDL-P-------HVVNGLDSDLANLKYVGG-DMFEAISPADAVLLKWIL 199 (296)
Q Consensus 132 ~~vLDvGgG~-G~-~~~~l~~~~p~-~~~~~~D~-~-------~~~~~a~~~~~ri~~~~~-D~~~~~p~~D~v~~~~vl 199 (296)
.+|.=||+|. |. ++..|++. + .+++++|. + +.++...+ ..+ .. +..+...+.|+|++.
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~--G~~~V~~~dr~~~~~~~~~~~~~~~~~--~g~---~~~s~~e~~~~aDvVi~a--- 94 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGR--NAARLAAYDLRFNDPAASGALRARAAE--LGV---EPLDDVAGIACADVVLSL--- 94 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCSEEEEECGGGGCTTTHHHHHHHHHH--TTC---EEESSGGGGGGCSEEEEC---
T ss_pred CeEEEECccHHHHHHHHHHHHc--CCCeEEEEeCCCccccchHHHHHHHHH--CCC---CCCCHHHHHhcCCEEEEe---
Confidence 5788898774 22 22223332 5 68999998 5 23332221 112 22 333333458988874
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
.++....+.++.+...++| |.++|..
T Consensus 95 --vp~~~~~~~~~~i~~~l~~----~~ivv~~ 120 (317)
T 4ezb_A 95 --VVGAATKAVAASAAPHLSD----EAVFIDL 120 (317)
T ss_dssp --CCGGGHHHHHHHHGGGCCT----TCEEEEC
T ss_pred --cCCHHHHHHHHHHHhhcCC----CCEEEEC
Confidence 4555566677888888887 5555543
No 437
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=62.88 E-value=24 Score=29.24 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=49.8
Q ss_pred CEEEEecC-Cc-hHH-HHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHH
Q 022515 132 NSLVDVGG-GI-GTA-AKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEEC 207 (296)
Q Consensus 132 ~~vLDvGg-G~-G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~ 207 (296)
.+|.=||+ |. |.. +..|++. +.+++++|. ++.++...+.. +.. .+..+...++|+|++. .++...
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~g--~~~--~~~~~~~~~aDvVi~a-----v~~~~~ 80 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS--AHHLAAIEIAPEGRDRLQGMG--IPL--TDGDGWIDEADVVVLA-----LPDNII 80 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS--SSEEEEECCSHHHHHHHHHTT--CCC--CCSSGGGGTCSEEEEC-----SCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHhcC--CCc--CCHHHHhcCCCEEEEc-----CCchHH
Confidence 47888988 74 333 2333332 468889998 66655543211 221 1322223468999884 355556
Q ss_pred HHHHHHHHHhcccCCCCcEEEEE
Q 022515 208 VKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 208 ~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
..+++.+...++| |.+++.
T Consensus 81 ~~v~~~l~~~l~~----~~ivv~ 99 (286)
T 3c24_A 81 EKVAEDIVPRVRP----GTIVLI 99 (286)
T ss_dssp HHHHHHHGGGSCT----TCEEEE
T ss_pred HHHHHHHHHhCCC----CCEEEE
Confidence 7788888888887 555553
No 438
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=62.55 E-value=7.6 Score=32.79 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=28.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCC----CeEEeccc
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPK----LECTCFDL 162 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~----~~~~~~D~ 162 (296)
++..|+=||||.|.....|.+.+|+ ++.+++|.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDP 96 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDG 96 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcC
Confidence 3569999999999999999998775 58999996
No 439
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=62.34 E-value=28 Score=31.56 Aligned_cols=97 Identities=20% Similarity=0.254 Sum_probs=56.8
Q ss_pred CEEEEecCCch--HHHHHHHHHCCCCeEEeccc-hhHhhccCCCC-----------------CCeeEEeccCCCCCCccc
Q 022515 132 NSLVDVGGGIG--TAAKAIAKAFPKLECTCFDL-PHVVNGLDSDL-----------------ANLKYVGGDMFEAISPAD 191 (296)
Q Consensus 132 ~~vLDvGgG~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-----------------~ri~~~~~D~~~~~p~~D 191 (296)
.+|.=||+|.= .++..|++..++.+++++|. ++.++..++.. .++.+. .|..+....+|
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t-~~~~~~~~~aD 88 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFS-SDIPKAIAEAD 88 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEE-SCHHHHHHHCS
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEE-CCHHHHhhcCC
Confidence 57999998853 34455666666789999998 77776654311 122221 12111123479
Q ss_pred eeEehh--hhc--------cCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 192 AVLLKW--ILH--------DWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 192 ~v~~~~--vlh--------~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
+|++.- -.+ ..+-.....+++.+.+.+++ |.++|....
T Consensus 89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~----g~iVV~~ST 136 (481)
T 2o3j_A 89 LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGG----PKIVVEKST 136 (481)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCS----CEEEEECSC
T ss_pred EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCC----CCEEEECCC
Confidence 888752 221 01112356778888899997 677776543
No 440
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=62.34 E-value=7.8 Score=33.32 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=58.2
Q ss_pred cCCCCEEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCCC----C-C-ccceeEehh
Q 022515 128 FEGLNSLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFEA----I-S-PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~~----~-p-~~D~v~~~~ 197 (296)
.+++.+||-+|+ |.|..+..+++.. +.++++++. ++-.+.+++ ..+.+--...|+.+. . . ++|+++-.-
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~ 235 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPI 235 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECC
Confidence 567889999995 7789999999886 669999887 666666554 222221111122111 1 1 488887532
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
- . ..++.+.+.|++ ||+++++-..
T Consensus 236 g-----~----~~~~~~~~~l~~---~G~iv~~G~~ 259 (342)
T 4eye_A 236 G-----G----PAFDDAVRTLAS---EGRLLVVGFA 259 (342)
T ss_dssp C-----------CHHHHHHTEEE---EEEEEEC---
T ss_pred c-----h----hHHHHHHHhhcC---CCEEEEEEcc
Confidence 1 1 246778889999 8999887643
No 441
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=62.33 E-value=32 Score=28.31 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=47.1
Q ss_pred EEEEecCCc-hHHH-HHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCC-ccceeEehhhhccCCchHHH
Q 022515 133 SLVDVGGGI-GTAA-KAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAIS-PADAVLLKWILHDWNDEECV 208 (296)
Q Consensus 133 ~vLDvGgG~-G~~~-~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p-~~D~v~~~~vlh~~~d~~~~ 208 (296)
+|.=||+|. |... ..+.+.....+++++|. ++.++.+++..- ......|..+... ++|+|++. .+.....
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 76 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-IDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR 76 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-CSEEESCGGGGGGTCCSEEEEC-----SCHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCC-cccccCCHHHHhcCCCCEEEEc-----CCHHHHH
Confidence 677788775 3333 33333311237889998 766655542111 1111223333345 68998884 3555666
Q ss_pred HHHHHHHHhccc
Q 022515 209 KILKKCKEAITS 220 (296)
Q Consensus 209 ~iL~~~~~aL~p 220 (296)
.+++++...+++
T Consensus 77 ~v~~~l~~~l~~ 88 (281)
T 2g5c_A 77 EIAKKLSYILSE 88 (281)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHHhhCCC
Confidence 788888888887
No 442
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=61.89 E-value=2.8 Score=36.24 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=57.6
Q ss_pred cCCCCEEEEecCC-chHHHHHHHHHCCCC-eEEeccc-hhHhhccCC-CCCCe-eEEeccCCCC-----C-CccceeEeh
Q 022515 128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS-DLANL-KYVGGDMFEA-----I-SPADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~ri-~~~~~D~~~~-----~-p~~D~v~~~ 196 (296)
. ++.+||-+|+| .|..+..+++.. +. +++++|. ++-.+.+++ ..+.+ .....|+.+. . .++|+++-.
T Consensus 166 ~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~ 243 (348)
T 2d8a_A 166 I-SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEF 243 (348)
T ss_dssp C-TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEEC
Confidence 5 67889999975 488888888886 56 8888887 666665554 22211 0000111110 1 148888753
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
- .. ...++.+.+.|++ +|+++.+-.
T Consensus 244 ~-----g~---~~~~~~~~~~l~~---~G~iv~~g~ 268 (348)
T 2d8a_A 244 S-----GA---PKALEQGLQAVTP---AGRVSLLGL 268 (348)
T ss_dssp S-----CC---HHHHHHHHHHEEE---EEEEEECCC
T ss_pred C-----CC---HHHHHHHHHHHhc---CCEEEEEcc
Confidence 2 11 1457788889999 899887764
No 443
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=61.87 E-value=3.6 Score=27.08 Aligned_cols=37 Identities=24% Similarity=0.136 Sum_probs=29.8
Q ss_pred chhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 41 PDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 41 f~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+++|.+ ++..|+.+||+++|++-..+.|.|-...++|
T Consensus 21 i~~L~~-~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG 57 (75)
T 1sfu_A 21 VLSLNT-NDYTTAISLSNRLKINKKKINQQLYKLQKED 57 (75)
T ss_dssp HHTSCT-TCEECHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHhCCC-CcchHHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 346776 2459999999999999998888887777766
No 444
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=61.76 E-value=15 Score=31.24 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=39.3
Q ss_pred CCCEEEEecCCchH--HHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCCccceeEehh
Q 022515 130 GLNSLVDVGGGIGT--AAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAISPADAVLLKW 197 (296)
Q Consensus 130 ~~~~vLDvGgG~G~--~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p~~D~v~~~~ 197 (296)
+..+|.=||+|+.. ++..++.......++++|+ ++....+.. ...+++.. .|+ +...++|+|+..-
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t-~d~-~~l~~aD~Vi~aa 85 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEIS-KDL-SASAHSKVVIFTV 85 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEE-SCG-GGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEe-CCH-HHHCCCCEEEEcC
Confidence 34689999999633 5555665543338999998 542222221 23467663 675 5667799998863
No 445
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=61.29 E-value=51 Score=27.90 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=57.9
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEe--ccCCC------CCCccceeEehh
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVG--GDMFE------AISPADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~D~~~------~~p~~D~v~~~~ 197 (296)
..++.+||=.|+|. |.++..+++..-...++++|. ++-.+.+++......+.. .|..+ ....+|+++-.-
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~ 237 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETA 237 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECS
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccccccc
Confidence 56778899898754 667777888775556788887 766666664222211211 11111 012367665432
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
.. ...++.+.+++++ ||+++++-...
T Consensus 238 -----G~---~~~~~~~~~~l~~---~G~~v~~g~~~ 263 (346)
T 4a2c_A 238 -----GV---PQTVELAVEIAGP---HAQLALVGTLH 263 (346)
T ss_dssp -----CS---HHHHHHHHHHCCT---TCEEEECCCCS
T ss_pred -----cc---cchhhhhhheecC---CeEEEEEeccC
Confidence 11 2457788889999 89988876543
No 446
>1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1vp3_A*
Probab=61.29 E-value=37 Score=29.02 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=36.0
Q ss_pred CCEEEEecCCchHHHHHHHHHCCC----CeEEeccchhHhhccCCCCCCeeEEe
Q 022515 131 LNSLVDVGGGIGTAAKAIAKAFPK----LECTCFDLPHVVNGLDSDLANLKYVG 180 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~~ri~~~~ 180 (296)
+..||=+|.+.|....-|.+.||+ ++++++|....+...+ ...+|+++.
T Consensus 76 g~~VVYaGsAPG~HI~fL~~lF~~l~~~lkwvLiDp~~f~~~Le-~~~ni~li~ 128 (348)
T 1vpt_A 76 GATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILN-GLRDVTLVT 128 (348)
T ss_dssp TCEEEEESCSSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGT-TCTTEEEEE
T ss_pred CCeEEEeCcCCcchHHHHHHHhhhcCCceEEEEECCCchhhhhc-CCCcEEeeh
Confidence 459999999999999999888775 7999999733333333 334566554
No 447
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=60.99 E-value=36 Score=30.59 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=55.5
Q ss_pred CCCEEEEecCCchHHH--HHHHHHCCCCeEEeccc-hhHhhccCCC------------------CCCeeEEeccCCCCCC
Q 022515 130 GLNSLVDVGGGIGTAA--KAIAKAFPKLECTCFDL-PHVVNGLDSD------------------LANLKYVGGDMFEAIS 188 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~--~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~ri~~~~~D~~~~~p 188 (296)
+.-+|-=||.|.=... ..|++. +.+++++|+ ++.++...+. ..++++. .|..+...
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~~--G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t-td~~ea~~ 83 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSDF--GHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT-TDLAEGVK 83 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE-SCHHHHHT
T ss_pred CceEEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE-CCHHHHHh
Confidence 4567888888753333 333333 678999999 7766655431 1233332 22222233
Q ss_pred ccceeEehh--hh---ccCCc-hHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515 189 PADAVLLKW--IL---HDWND-EECVKILKKCKEAITSDGKKGKVIIIDMIR 234 (296)
Q Consensus 189 ~~D~v~~~~--vl---h~~~d-~~~~~iL~~~~~aL~p~~~gG~lli~e~~~ 234 (296)
++|+|++.- -. +.-+| .....+++.+.+.|++ |.++|.+...
T Consensus 84 ~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~----g~iVV~~STv 131 (446)
T 4a7p_A 84 DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTK----PSVIVTKSTV 131 (446)
T ss_dssp TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCS----CCEEEECSCC
T ss_pred cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCC----CCEEEEeCCC
Confidence 578888751 11 11111 1356778889999987 6777776543
No 448
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=60.92 E-value=7.6 Score=33.30 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=34.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-h---hHhhccCC
Q 022515 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-P---HVVNGLDS 171 (296)
Q Consensus 129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~---~~~~~a~~ 171 (296)
.++..|||-=||+|..+.+..+. +.+++++|+ | ..++.+++
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~ 285 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLT 285 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHH
T ss_pred CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHH
Confidence 46679999999999999988887 679999999 7 77776654
No 449
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=60.85 E-value=1.8 Score=30.57 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=31.3
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++.|+..|...+.+.|..+||+.+|++...++++|......|
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~G 61 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQG 61 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 345666663322379999999999999999999887766544
No 450
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=60.84 E-value=1.7 Score=34.02 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=37.3
Q ss_pred HHHHHHHHcCcchhcccCCCCCCHHHHHHHcC-CCCcchhhhHHHhhhcC
Q 022515 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALT-INPSKSRCQLRTWFQND 78 (296)
Q Consensus 30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~-~~~~~l~~~l~~~~~~~ 78 (296)
++|.-=.++.|+..|.+ +|.|+.+||+.++ ++...+.+||......|
T Consensus 18 ~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~ag 65 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIG--RSLTTRELAELLPDVATTTLYRQVGILVKAG 65 (182)
T ss_dssp HHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTBCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 34445578889999986 8999999999996 88888998887765433
No 451
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=60.71 E-value=37 Score=28.89 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=57.9
Q ss_pred cCCCCEEEEecCC-chHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCCeeEEeccCCC-C----C----C-ccceeE
Q 022515 128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A----I----S-PADAVL 194 (296)
Q Consensus 128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~----~----p-~~D~v~ 194 (296)
. ++.+||-+|+| .|..+..+++.. +. ++++.|. ++-.+.+++. .. .++ |..+ + . + ++|+++
T Consensus 163 ~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a~-~v~--~~~~~~~~~~~~~~~~~g~D~vi 236 (343)
T 2dq4_A 163 V-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-AD-RLV--NPLEEDLLEVVRRVTGSGVEVLL 236 (343)
T ss_dssp C-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-CS-EEE--CTTTSCHHHHHHHHHSSCEEEEE
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-HH-hcc--CcCccCHHHHHHHhcCCCCCEEE
Confidence 5 77899999964 488888888876 56 8999997 6666666533 11 111 2221 1 1 2 478887
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
-.- .. ...++.+.+.|++ +|+++.+-.
T Consensus 237 d~~-----g~---~~~~~~~~~~l~~---~G~iv~~g~ 263 (343)
T 2dq4_A 237 EFS-----GN---EAAIHQGLMALIP---GGEARILGI 263 (343)
T ss_dssp ECS-----CC---HHHHHHHHHHEEE---EEEEEECCC
T ss_pred ECC-----CC---HHHHHHHHHHHhc---CCEEEEEec
Confidence 532 22 1357788889999 899887754
No 452
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=60.70 E-value=10 Score=33.38 Aligned_cols=96 Identities=20% Similarity=0.124 Sum_probs=56.5
Q ss_pred cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCe-eEEeccCCCC----C-C-ccceeEehh
Q 022515 128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANL-KYVGGDMFEA----I-S-PADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri-~~~~~D~~~~----~-p-~~D~v~~~~ 197 (296)
..++.+||=+|+|. |.++..+++...-.+++++|. ++-.+.+++ ..+.+ .....|+.+. . + ++|+++-.-
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~ 290 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEAT 290 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECC
Confidence 56778899898754 888888998873338999997 776666654 22211 1111122110 1 1 488887532
Q ss_pred hhccCCchHHHHHHHHHHHhc----ccCCCCcEEEEEeee
Q 022515 198 ILHDWNDEECVKILKKCKEAI----TSDGKKGKVIIIDMI 233 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL----~p~~~gG~lli~e~~ 233 (296)
..+. ..+..+.++| ++ ||+++++-..
T Consensus 291 -----g~~~--~~~~~~~~~l~~~~~~---~G~iv~~G~~ 320 (404)
T 3ip1_A 291 -----GVPQ--LVWPQIEEVIWRARGI---NATVAIVARA 320 (404)
T ss_dssp -----SCHH--HHHHHHHHHHHHCSCC---CCEEEECSCC
T ss_pred -----CCcH--HHHHHHHHHHHhccCC---CcEEEEeCCC
Confidence 2221 1344444445 99 9999887653
No 453
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=60.67 E-value=2.9 Score=29.73 Aligned_cols=53 Identities=8% Similarity=0.191 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCC--HHHHHHHc-CCCCcchhhhHHHhhhcC
Q 022515 15 AQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMT--LNELVSAL-TINPSKSRCQLRTWFQND 78 (296)
Q Consensus 15 ~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t--~~eLA~~~-~~~~~~l~~~l~~~~~~~ 78 (296)
+...+++++.+.|....|. .|.. ++.+ +.||++.+ |+++..+.++|......|
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~--g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~G 71 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN--GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSG 71 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS--SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc--CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCC
Confidence 4445556666666555444 4443 6777 99999999 999999999998877655
No 454
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=60.44 E-value=5.5 Score=34.30 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=58.5
Q ss_pred cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccchhHhhccCC-CCCCeeEEeccCCCC-----C-CccceeEehhh
Q 022515 128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-DLANLKYVGGDMFEA-----I-SPADAVLLKWI 198 (296)
Q Consensus 128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~ri~~~~~D~~~~-----~-p~~D~v~~~~v 198 (296)
..++.+||-+| ||.|..+..+++.. +.++++...++-.+.+++ ..+.+. ...|+.+. . .++|+++-.-
T Consensus 148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~vid~~- 224 (343)
T 3gaz_A 148 VQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFATARGSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDLVYDTL- 224 (343)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECHHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEEEEESS-
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCHHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceEEEECC-
Confidence 56788999999 56789999999876 568887733666666654 222222 11121111 1 1488877532
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
.. ..+..+.+.|++ +|+++++-..
T Consensus 225 ----g~----~~~~~~~~~l~~---~G~iv~~g~~ 248 (343)
T 3gaz_A 225 ----GG----PVLDASFSAVKR---FGHVVSCLGW 248 (343)
T ss_dssp ----CT----HHHHHHHHHEEE---EEEEEESCCC
T ss_pred ----Cc----HHHHHHHHHHhc---CCeEEEEccc
Confidence 22 357788889999 8998876543
No 455
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=60.21 E-value=2.9 Score=36.30 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=58.3
Q ss_pred cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCe-eEEeccCCCC-----CCccceeEehh
Q 022515 128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANL-KYVGGDMFEA-----ISPADAVLLKW 197 (296)
Q Consensus 128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri-~~~~~D~~~~-----~p~~D~v~~~~ 197 (296)
.+++.+||-+| ||.|..+..+++.. +.++++.|. ++-.+.+++ ..+.+ .....|+.+. ..++|+++-.-
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 243 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMI 243 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESC
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECC
Confidence 56778999995 56788888888876 679999997 766666654 22211 1001111110 12478887632
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
..+ .+..+.+.|++ +|+++++-.
T Consensus 244 -----g~~----~~~~~~~~l~~---~G~iv~~g~ 266 (353)
T 4dup_A 244 -----GAA----YFERNIASLAK---DGCLSIIAF 266 (353)
T ss_dssp -----CGG----GHHHHHHTEEE---EEEEEECCC
T ss_pred -----CHH----HHHHHHHHhcc---CCEEEEEEe
Confidence 222 46778888999 899887754
No 456
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=60.20 E-value=8.9 Score=33.53 Aligned_cols=32 Identities=41% Similarity=0.494 Sum_probs=27.0
Q ss_pred CCEEEEecCCchHHHHH--HHHHCCCCeEEeccc
Q 022515 131 LNSLVDVGGGIGTAAKA--IAKAFPKLECTCFDL 162 (296)
Q Consensus 131 ~~~vLDvGgG~G~~~~~--l~~~~p~~~~~~~D~ 162 (296)
+++|+=||+|.+.++.+ |.+..++.+++++|.
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~ 35 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEP 35 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeC
Confidence 57899999999987765 677778899999996
No 457
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=60.05 E-value=12 Score=32.03 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=56.2
Q ss_pred CCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCCC-----CCccceeEehhhhc
Q 022515 130 GLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFEA-----ISPADAVLLKWILH 200 (296)
Q Consensus 130 ~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~~-----~p~~D~v~~~~vlh 200 (296)
++.+||=+| ||.|.++..+++.. +.++++.+. ++-.+.+++ ..+.+--...|+.+. ..++|+++-..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~--- 225 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTF--- 225 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESS---
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECC---
Confidence 678899985 56788888888876 569999998 776666654 222211000111111 12488887531
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 201 DWNDEECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
.. ...++.+.++|++ +|+++.+
T Consensus 226 --g~---~~~~~~~~~~l~~---~G~iv~~ 247 (346)
T 3fbg_A 226 --NT---DMYYDDMIQLVKP---RGHIATI 247 (346)
T ss_dssp --CH---HHHHHHHHHHEEE---EEEEEES
T ss_pred --Cc---hHHHHHHHHHhcc---CCEEEEE
Confidence 21 2457788889999 8998765
No 458
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=59.78 E-value=1 Score=36.94 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh
Q 022515 29 SMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ 76 (296)
Q Consensus 29 ~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~ 76 (296)
..+|..-.++.|+..|.. +|.|+.|||+.+|+++..+.+++.....
T Consensus 6 lkaL~~~~R~~IL~~L~~--g~~s~~ELa~~lglS~stVs~hL~~Le~ 51 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC--MECYFSLLSSKVSVSSTAVAKHLKIMER 51 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345555667788888885 7999999999999999999998877654
No 459
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=58.93 E-value=50 Score=24.17 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=50.1
Q ss_pred CEEEEecCCchHHHHHHHHHC--CCCeEEeccc-h-hHhhccCC-CCCCeeEEeccCCCC-------CCccceeEehhhh
Q 022515 132 NSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-P-HVVNGLDS-DLANLKYVGGDMFEA-------ISPADAVLLKWIL 199 (296)
Q Consensus 132 ~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~-~~~~~a~~-~~~ri~~~~~D~~~~-------~p~~D~v~~~~vl 199 (296)
.+|+=+|+ |..+..+++.. .+.+++++|. + +-++.... ....+.++.||..++ ..++|++++.-
T Consensus 4 ~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~-- 79 (153)
T 1id1_A 4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS-- 79 (153)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS--
T ss_pred CcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEec--
Confidence 46777776 55555555432 2568899987 4 32322221 234588899998762 23588887742
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 200 HDWNDEECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
+++..-..+....+.+.| ..+++.
T Consensus 80 ---~~d~~n~~~~~~a~~~~~---~~~ii~ 103 (153)
T 1id1_A 80 ---DNDADNAFVVLSAKDMSS---DVKTVL 103 (153)
T ss_dssp ---SCHHHHHHHHHHHHHHTS---SSCEEE
T ss_pred ---CChHHHHHHHHHHHHHCC---CCEEEE
Confidence 333333344455556655 456554
No 460
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=58.89 E-value=2.4 Score=35.30 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=31.6
Q ss_pred cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.|++.|...+++.|+.|||+++|++..-+.|.|..+...|
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G 64 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELG 64 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34667776433689999999999999999998877665433
No 461
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=58.84 E-value=33 Score=31.45 Aligned_cols=124 Identities=13% Similarity=0.092 Sum_probs=67.0
Q ss_pred CCCEEEEec-CCchHHH-HHHHHHCCCCeEEeccc-h--hHhhccCCCCCCeeEEeccCCCCC-CccceeEehhhhccCC
Q 022515 130 GLNSLVDVG-GGIGTAA-KAIAKAFPKLECTCFDL-P--HVVNGLDSDLANLKYVGGDMFEAI-SPADAVLLKWILHDWN 203 (296)
Q Consensus 130 ~~~~vLDvG-gG~G~~~-~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~ri~~~~~D~~~~~-p~~D~v~~~~vlh~~~ 203 (296)
+..+|.=|| ||+|-.+ ..++.+ .+.++++.|. + ...+..+ ...|.+..|.-.... .++|+|+.+-.+. .+
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~-~G~~V~~sD~~~~~~~~~~L~--~~gi~~~~G~~~~~~~~~~d~vV~Spgi~-~~ 93 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARA-LGHTVTGSDANIYPPMSTQLE--QAGVTIEEGYLIAHLQPAPDLVVVGNAMK-RG 93 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCCCTTHHHHHH--HTTCEEEESCCGGGGCSCCSEEEECTTCC-TT
T ss_pred cCCEEEEEEecHhhHHHHHHHHHh-CCCEEEEECCCCCcHHHHHHH--HCCCEEECCCCHHHcCCCCCEEEECCCcC-CC
Confidence 346788888 6777654 333343 3789999997 2 2222221 234677766332233 3589999887663 12
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhh-h-hhhhhh--hcCccccCHHHHHHHHHhcCCce
Q 022515 204 DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLF-F-DMLMMV--LLTGTERDEKEWTKLFTYAGFSD 279 (296)
Q Consensus 204 d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~g~~rt~~e~~~ll~~aGf~~ 279 (296)
.+ .++++++. |.-++.+.-+ .... . ...... .++|+.-|..-+..+|+++|++.
T Consensus 94 ~p----~l~~a~~~-------gi~v~~~~e~-----------l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~ 151 (524)
T 3hn7_A 94 MD----VIEYMLDT-------GLRYTSGPQF-----------LSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDA 151 (524)
T ss_dssp SH----HHHHHHHH-------TCCEEEHHHH-----------HHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCC
T ss_pred CH----HHHHHHHC-------CCcEEEHHHH-----------HHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCc
Confidence 22 24444332 3334443210 0000 0 111111 25788888888999999999875
No 462
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=58.78 E-value=3.1 Score=29.51 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=28.7
Q ss_pred chhcccCCCCCCHHHHHHHc-CCCCcchhhhHHHhhhcC
Q 022515 41 PDIISKHGKPMTLNELVSAL-TINPSKSRCQLRTWFQND 78 (296)
Q Consensus 41 f~~L~~~~~~~t~~eLA~~~-~~~~~~l~~~l~~~~~~~ 78 (296)
+..|.+ ++.+..|||+.+ ++++..+.+.+......|
T Consensus 28 L~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~Le~~G 64 (112)
T 1z7u_A 28 MDELFQ--GTKRNGELMRALDGITQRVLTDRLREMEKDG 64 (112)
T ss_dssp HHHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 334444 689999999999 999999999887776554
No 463
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=58.47 E-value=4.1 Score=29.51 Aligned_cols=42 Identities=14% Similarity=0.387 Sum_probs=33.2
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|... ++.|..+||+.+++++..+.+.+......|
T Consensus 34 ~~~~iL~~l~~~-~~~~~~ela~~l~~~~~tvs~~l~~L~~~g 75 (139)
T 3bja_A 34 VQFGVIQVLAKS-GKVSMSKLIENMGCVPSNMTTMIQRMKRDG 75 (139)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHCSSCCTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCChhHHHHHHHHHHHCC
Confidence 345566677653 689999999999999999999887776554
No 464
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=57.55 E-value=7.9 Score=28.29 Aligned_cols=42 Identities=5% Similarity=-0.020 Sum_probs=33.0
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|... +++|..+||+.+++++..+.+.+......|
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G 73 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSLPKQTVSGVCKTLAGQG 73 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 455577777653 689999999999999999988777766544
No 465
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=57.39 E-value=77 Score=28.68 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=67.1
Q ss_pred CCCEEEEec-CCchHHH-HHHHHHCCCCeEEeccc-h-hHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCch
Q 022515 130 GLNSLVDVG-GGIGTAA-KAIAKAFPKLECTCFDL-P-HVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDE 205 (296)
Q Consensus 130 ~~~~vLDvG-gG~G~~~-~~l~~~~p~~~~~~~D~-~-~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~ 205 (296)
...+|+=|| ||+|-.+ ..++... +.++++.|. + ...+..+ ...+.+..|.-.+.+.++|+|+.+-.+.. +.+
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~-G~~V~~~D~~~~~~~~~l~--~~gi~~~~g~~~~~~~~~d~vV~Spgi~~-~~p 96 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANE-GYQISGSDLAPNSVTQHLT--ALGAQIYFHHRPENVLDASVVVVSTAISA-DNP 96 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHT-TCEEEEECSSCCHHHHHHH--HTTCEEESSCCGGGGTTCSEEEECTTSCT-TCH
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhC-CCeEEEEECCCCHHHHHHH--HCCCEEECCCCHHHcCCCCEEEECCCCCC-CCH
Confidence 456888888 6777642 4444443 789999997 3 2322222 23466666522223456899998876631 122
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh-hhhh--hcCccccCHHHHHHHHHhcCCce
Q 022515 206 ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM-LMMV--LLTGTERDEKEWTKLFTYAGFSD 279 (296)
Q Consensus 206 ~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~g~~rt~~e~~~ll~~aGf~~ 279 (296)
.++.+++. |.-++.+.-. ......- .... .++|+.-|.+-+..+|+++|++.
T Consensus 97 ----~~~~a~~~-------gi~v~~~~e~-----------l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~ 151 (494)
T 4hv4_A 97 ----EIVAAREA-------RIPVIRRAEM-----------LAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDP 151 (494)
T ss_dssp ----HHHHHHHT-------TCCEEEHHHH-----------HHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTCCC
T ss_pred ----HHHHHHHC-------CCCEEcHHHH-----------HHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCCCC
Confidence 23344322 3334433110 0011110 0111 24788888899999999999863
No 466
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=57.27 E-value=36 Score=30.46 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=55.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCC----------------CCCeeEEeccCCCCCCccce
Q 022515 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD----------------LANLKYVGGDMFEAISPADA 192 (296)
Q Consensus 130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------~~ri~~~~~D~~~~~p~~D~ 192 (296)
...+|.=||+|.=....+.+-.. +.+++++|. ++.++...+. ..++++. .|..+...++|+
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~t-td~~ea~~~aDv 112 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRAT-TDKHDAYRNADY 112 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEE-SCHHHHHTTCSE
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEE-cCHHHHHhCCCE
Confidence 34688889887644444433333 789999999 7776654421 1233332 222222335788
Q ss_pred eEehhhhcc-----CCc-hHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515 193 VLLKWILHD-----WND-EECVKILKKCKEAITSDGKKGKVIIIDMIRE 235 (296)
Q Consensus 193 v~~~~vlh~-----~~d-~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~ 235 (296)
|++.---.. .+| .....+++.+.+ |+| |.++|.+...+
T Consensus 113 ViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~----g~iVV~~STv~ 156 (432)
T 3pid_A 113 VIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INP----NAVMIIKSTIP 156 (432)
T ss_dssp EEECCCCEEETTTTEEECHHHHHHHHHHHH-HCT----TSEEEECSCCC
T ss_pred EEEeCCCccccccccccHHHHHHHHHHHHh-cCC----CcEEEEeCCCC
Confidence 887421100 001 245677888888 887 66667665444
No 467
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=57.13 E-value=6.9 Score=28.37 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=33.2
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|... ++.|..+||+.+++++..+.+.+......|
T Consensus 32 ~~~~iL~~l~~~-~~~~~~ela~~l~is~~~vs~~l~~L~~~g 73 (142)
T 3bdd_A 32 TRYSILQTLLKD-APLHQLALQERLQIDRAAVTRHLKLLEESG 73 (142)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 445577777653 689999999999999999998777766544
No 468
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=57.13 E-value=3.5 Score=32.32 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=32.9
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
-...|.+.|.+.++++|+.|||+++|++.+-+++.+...-..|
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G 64 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLG 64 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4456777886533579999999999999999998776554444
No 469
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=57.04 E-value=15 Score=27.06 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=31.9
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++.|+..|... ++.|..+||+.+++++..+.+.+......|
T Consensus 39 ~~~iL~~l~~~-~~~t~~ela~~l~~s~~tvs~~l~~Le~~g 79 (155)
T 1s3j_A 39 QLFVLASLKKH-GSLKVSEIAERMEVKPSAVTLMADRLEQKN 79 (155)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 34466677653 689999999999999999988877776544
No 470
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=56.78 E-value=28 Score=28.92 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=45.2
Q ss_pred CEEEEecCCc-hHH-HHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEe--------c---c---CCCCCCccceeE
Q 022515 132 NSLVDVGGGI-GTA-AKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVG--------G---D---MFEAISPADAVL 194 (296)
Q Consensus 132 ~~vLDvGgG~-G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--------~---D---~~~~~p~~D~v~ 194 (296)
.+|.=||+|. |.. +..|++. +.+++++|. ++.++...+. .+.... . + ..+...++|+|+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWPAHIEAIRKN--GLIADFNGEEVVANLPIFSPEEIDHQNEQVDLII 79 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHH--CEEEEETTEEEEECCCEECGGGCCTTSCCCSEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhC--CEEEEeCCCeeEecceeecchhhcccCCCCCEEE
Confidence 4788899874 322 2333333 458899998 6665544321 111111 0 1 111122689888
Q ss_pred ehhhhccCCchHHHHHHHHHHHhccc
Q 022515 195 LKWILHDWNDEECVKILKKCKEAITS 220 (296)
Q Consensus 195 ~~~vlh~~~d~~~~~iL~~~~~aL~p 220 (296)
+. .+......+++.+...++|
T Consensus 80 ~~-----v~~~~~~~v~~~l~~~l~~ 100 (316)
T 2ew2_A 80 AL-----TKAQQLDAMFKAIQPMITE 100 (316)
T ss_dssp EC-----SCHHHHHHHHHHHGGGCCT
T ss_pred EE-----eccccHHHHHHHHHHhcCC
Confidence 74 3445567888888888887
No 471
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=56.78 E-value=4.8 Score=34.90 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=54.5
Q ss_pred CEEEEecCC-chHHH-HHHH-HHCCCCe-EEeccc-hh---HhhccCCCCCCeeEEeccCCC-CC-------CccceeEe
Q 022515 132 NSLVDVGGG-IGTAA-KAIA-KAFPKLE-CTCFDL-PH---VVNGLDSDLANLKYVGGDMFE-AI-------SPADAVLL 195 (296)
Q Consensus 132 ~~vLDvGgG-~G~~~-~~l~-~~~p~~~-~~~~D~-~~---~~~~a~~~~~ri~~~~~D~~~-~~-------p~~D~v~~ 195 (296)
.+||-+|+| .|.++ ..++ +.. +.+ ++++|. ++ -.+.+++.. .+.+ |..+ ++ +++|+++-
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~lG--a~~v--~~~~~~~~~i~~~~gg~Dvvid 248 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEELD--ATYV--DSRQTPVEDVPDVYEQMDFIYE 248 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHTT--CEEE--ETTTSCGGGHHHHSCCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHcC--Cccc--CCCccCHHHHHHhCCCCCEEEE
Confidence 899999964 57888 8888 654 666 899987 55 566665321 1222 3222 11 14787764
Q ss_pred hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
.- ..+ ..++.+.+.|++ +|+++.+-..
T Consensus 249 ~~-----g~~---~~~~~~~~~l~~---~G~iv~~g~~ 275 (357)
T 2b5w_A 249 AT-----GFP---KHAIQSVQALAP---NGVGALLGVP 275 (357)
T ss_dssp CS-----CCH---HHHHHHHHHEEE---EEEEEECCCC
T ss_pred CC-----CCh---HHHHHHHHHHhc---CCEEEEEeCC
Confidence 32 222 357788889999 8998887654
No 472
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=56.76 E-value=5.9 Score=29.76 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=33.4
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|... +++|..+||+.+++++..+.+.+......|
T Consensus 47 ~q~~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G 88 (162)
T 3k0l_A 47 PQFTALSVLAAK-PNLSNAKLAERSFIKPQSANKILQDLLANG 88 (162)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCc
Confidence 345577777764 689999999999999999998777766544
No 473
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=56.61 E-value=71 Score=25.18 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=51.5
Q ss_pred EEEEecCCchHHHHHHHHHCC--C-CeEEeccc-hhHhhccCCCCCCeeEEeccCCCC------CCccceeEehhhhccC
Q 022515 133 SLVDVGGGIGTAAKAIAKAFP--K-LECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA------ISPADAVLLKWILHDW 202 (296)
Q Consensus 133 ~vLDvGgG~G~~~~~l~~~~p--~-~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~------~p~~D~v~~~~vlh~~ 202 (296)
+|| |=||+|.+..++++.+- + .++++++. ++-.+.. ...++.++.+|+.++ +.+.|+++.....
T Consensus 25 ~vl-VtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~--- 98 (236)
T 3qvo_A 25 NVL-ILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP--YPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG--- 98 (236)
T ss_dssp EEE-EETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS--CCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS---
T ss_pred EEE-EEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc--ccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC---
Confidence 455 55666777777766542 3 57888887 4433222 356899999999872 2357888754321
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 203 NDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
.......+++.++++.. ..++++.+...
T Consensus 99 --~~~~~~~~~~~~~~~~~-~~~~iV~iSS~ 126 (236)
T 3qvo_A 99 --EDLDIQANSVIAAMKAC-DVKRLIFVLSL 126 (236)
T ss_dssp --TTHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred --CchhHHHHHHHHHHHHc-CCCEEEEEecc
Confidence 11112234444444431 02577766543
No 474
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=56.14 E-value=14 Score=28.23 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhc
Q 022515 29 SMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQN 77 (296)
Q Consensus 29 ~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~ 77 (296)
..||++.+.|..- . ++++|.++||+++++++..+++.+...-+.
T Consensus 12 ~yAlr~l~~La~~---~--~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 12 SVAVHSILYLDAH---R--DSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHHHHTT---T--TSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC---C--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4566666555432 1 268999999999999999999877665543
No 475
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=55.80 E-value=7.5 Score=28.16 Aligned_cols=29 Identities=7% Similarity=0.083 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHhhhc
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTWFQN 77 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~~~~ 77 (296)
++.|+.+||+++|+++..+++.+....+.
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 68999999999999999999877666543
No 476
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=55.70 E-value=14 Score=27.84 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=33.1
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|... +++|..+||+.+++++..+.+.+......|
T Consensus 46 ~~~~iL~~L~~~-~~~t~~eLa~~l~is~~tvs~~l~~Le~~G 87 (168)
T 2nyx_A 46 PQFRTLVILSNH-GPINLATLATLLGVQPSATGRMVDRLVGAE 87 (168)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 445567777653 689999999999999999988777766544
No 477
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=55.68 E-value=9 Score=32.41 Aligned_cols=87 Identities=10% Similarity=0.076 Sum_probs=54.1
Q ss_pred cCCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccchhHhhccCC-CCCCeeEEeccCCCCCC-ccceeEehhhhccCCc
Q 022515 128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-DLANLKYVGGDMFEAIS-PADAVLLKWILHDWND 204 (296)
Q Consensus 128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~ri~~~~~D~~~~~p-~~D~v~~~~vlh~~~d 204 (296)
.+++.+||=+|+| .|.++..+++.. +.++++++.++-.+.+++ ..+.+ + .| .+..+ ++|+++-.- ..
T Consensus 140 ~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~lGa~~v--~-~d-~~~v~~g~Dvv~d~~-----g~ 209 (315)
T 3goh_A 140 LTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVSASLSQALAAKRGVRHL--Y-RE-PSQVTQKYFAIFDAV-----NS 209 (315)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSCCHHHHHHHTEEEE--E-SS-GGGCCSCEEEEECC--------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEEChhhHHHHHHcCCCEE--E-cC-HHHhCCCccEEEECC-----Cc
Confidence 6778899999975 488889998876 568888875444444443 22211 1 24 33333 588887532 11
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIID 231 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e 231 (296)
+ .+..+.++|+| +|+++.+-
T Consensus 210 ~----~~~~~~~~l~~---~G~~v~~g 229 (315)
T 3goh_A 210 Q----NAAALVPSLKA---NGHIICIQ 229 (315)
T ss_dssp --------TTGGGEEE---EEEEEEEC
T ss_pred h----hHHHHHHHhcC---CCEEEEEe
Confidence 1 23567788999 89998874
No 478
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=55.68 E-value=2.7 Score=35.90 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=57.7
Q ss_pred cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEe--ccCCCC----C-C-ccceeEeh
Q 022515 128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVG--GDMFEA----I-S-PADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~D~~~~----~-p-~~D~v~~~ 196 (296)
..++.+||-+| ||.|..+..+++.. +.++++.|. ++-.+.+++......+-. .++.+. . . ++|+++..
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 216 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDS 216 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEEC
Confidence 56778999999 67788888888765 568888887 665555543111111111 111110 1 1 47887754
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
- .. ..++.+.+.|++ ||+++++-..
T Consensus 217 ~-----g~----~~~~~~~~~l~~---~G~iv~~g~~ 241 (327)
T 1qor_A 217 V-----GR----DTWERSLDCLQR---RGLMVSFGNS 241 (327)
T ss_dssp S-----CG----GGHHHHHHTEEE---EEEEEECCCT
T ss_pred C-----ch----HHHHHHHHHhcC---CCEEEEEecC
Confidence 3 21 347788889999 8998877643
No 479
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=55.38 E-value=4.3 Score=27.67 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=28.8
Q ss_pred chhcccCCCCCCHHHHHHHcCCCCcc-hhhhHHHhhhcC
Q 022515 41 PDIISKHGKPMTLNELVSALTINPSK-SRCQLRTWFQND 78 (296)
Q Consensus 41 f~~L~~~~~~~t~~eLA~~~~~~~~~-l~~~l~~~~~~~ 78 (296)
+..|...+.+.|..|||+.+++++.. +.+.+......|
T Consensus 21 L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~G 59 (95)
T 2pg4_A 21 LLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAG 59 (95)
T ss_dssp HHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTT
T ss_pred HHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCC
Confidence 33444432379999999999999999 888887776655
No 480
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=55.17 E-value=15 Score=32.71 Aligned_cols=92 Identities=12% Similarity=-0.004 Sum_probs=57.7
Q ss_pred cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCC-eeEEeccCC------------------
Q 022515 128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LAN-LKYVGGDMF------------------ 184 (296)
Q Consensus 128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~r-i~~~~~D~~------------------ 184 (296)
..++.+||=+| ||.|..+..+++.. +.++++.+. ++-.+.+++. .+. +.....|+.
T Consensus 218 ~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
T 4a0s_A 218 MKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLA 296 (447)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHH
Confidence 56788999998 46788888888876 678777776 6666665542 222 111111221
Q ss_pred C-----CCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 185 E-----AISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 185 ~-----~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
+ ...++|+++-.- .. ..++.+.+.+++ ||+++++-.
T Consensus 297 ~~v~~~~g~g~Dvvid~~-----G~----~~~~~~~~~l~~---~G~iv~~G~ 337 (447)
T 4a0s_A 297 KLVVEKAGREPDIVFEHT-----GR----VTFGLSVIVARR---GGTVVTCGS 337 (447)
T ss_dssp HHHHHHHSSCCSEEEECS-----CH----HHHHHHHHHSCT---TCEEEESCC
T ss_pred HHHHHHhCCCceEEEECC-----Cc----hHHHHHHHHHhc---CCEEEEEec
Confidence 0 012478887532 11 246778888999 999888753
No 481
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=55.08 E-value=4.4 Score=29.86 Aligned_cols=42 Identities=7% Similarity=0.173 Sum_probs=33.3
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|... ++.|..+||+.+++++..+.+.+......|
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~Le~~G 82 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKK 82 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 455567777664 689999999999999999988777766544
No 482
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=54.73 E-value=9 Score=34.47 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=57.9
Q ss_pred cCCCCEEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCC-eeEEeccCC-----------------C
Q 022515 128 FEGLNSLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLAN-LKYVGGDMF-----------------E 185 (296)
Q Consensus 128 ~~~~~~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r-i~~~~~D~~-----------------~ 185 (296)
..++.+||=+|+ |.|.++..+++.. +.++++++. ++-.+.+++ ..+. +.....|+. +
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~ 304 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGK 304 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHH
Confidence 567789999984 6789999999876 678777776 666666654 2221 111111211 1
Q ss_pred ---C-C--CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 186 ---A-I--SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 186 ---~-~--p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
. . .++|+++-.- .. ..+..+.++|++ ||+++++-.
T Consensus 305 ~i~~~t~g~g~Dvvid~~-----G~----~~~~~~~~~l~~---~G~iv~~G~ 345 (456)
T 3krt_A 305 RIRELTGGEDIDIVFEHP-----GR----ETFGASVFVTRK---GGTITTCAS 345 (456)
T ss_dssp HHHHHHTSCCEEEEEECS-----CH----HHHHHHHHHEEE---EEEEEESCC
T ss_pred HHHHHhCCCCCcEEEEcC-----Cc----hhHHHHHHHhhC---CcEEEEEec
Confidence 0 1 2488877532 11 357788889999 899887653
No 483
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=54.57 E-value=4.5 Score=31.88 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=27.6
Q ss_pred cccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 44 ISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 44 L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
+.+.+.|.|..|||+.+|++...+.++|...-+.|
T Consensus 18 ~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G 52 (196)
T 3k2z_A 18 IEKNGYPPSVREIARRFRITPRGALLHLIALEKKG 52 (196)
T ss_dssp HHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCC
Confidence 33333589999999999999888888887776665
No 484
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=54.52 E-value=20 Score=30.87 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=57.1
Q ss_pred cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec--cCCCC----C--CccceeEeh
Q 022515 128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG--DMFEA----I--SPADAVLLK 196 (296)
Q Consensus 128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--D~~~~----~--p~~D~v~~~ 196 (296)
+.++.+||-+| ||.|..+..+++.. +.++++.|. ++-.+.+++......+-.. ++.+. . .++|+++-.
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 238 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDC 238 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEEC
Confidence 56778999998 57888888888876 678999987 6666555432111111111 11110 1 147887654
Q ss_pred hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
- ..+ .++.+.+.|++ ||+++++-.
T Consensus 239 ~-----G~~----~~~~~~~~l~~---~G~iv~~G~ 262 (354)
T 2j8z_A 239 I-----GGS----YWEKNVNCLAL---DGRWVLYGL 262 (354)
T ss_dssp S-----CGG----GHHHHHHHEEE---EEEEEECCC
T ss_pred C-----Cch----HHHHHHHhccC---CCEEEEEec
Confidence 3 222 36677788999 899888764
No 485
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=54.44 E-value=13 Score=32.47 Aligned_cols=94 Identities=17% Similarity=0.126 Sum_probs=58.6
Q ss_pred cCCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec------cCCCC----C-C-cccee
Q 022515 128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG------DMFEA----I-S-PADAV 193 (296)
Q Consensus 128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~------D~~~~----~-p-~~D~v 193 (296)
..++.+||-+|+| .|.++..+++..-..++++.+. ++-.+.+++.... .++.. |+.+. . . ++|++
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~v~~~~~g~g~Dvv 271 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD-LTLNRRETSVEERRKAIMDITHGRGADFI 271 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS-EEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCc-EEEeccccCcchHHHHHHHHhCCCCCcEE
Confidence 3456799999954 5888889998873258999997 7666666542211 11211 21110 1 1 48888
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI 233 (296)
Q Consensus 194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~ 233 (296)
+-.- ..+ ..++.+.+.|++ +|+++++-..
T Consensus 272 id~~-----g~~---~~~~~~~~~l~~---~G~iv~~G~~ 300 (380)
T 1vj0_A 272 LEAT-----GDS---RALLEGSELLRR---GGFYSVAGVA 300 (380)
T ss_dssp EECS-----SCT---THHHHHHHHEEE---EEEEEECCCC
T ss_pred EECC-----CCH---HHHHHHHHHHhc---CCEEEEEecC
Confidence 7532 111 246778888999 8998877543
No 486
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=54.11 E-value=3.7 Score=29.82 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=33.8
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|... ++.|..+||+.+++++..+.+.+......|
T Consensus 39 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~L~~~g 80 (140)
T 2nnn_A 39 TQWAALVRLGET-GPCPQNQLGRLTAMDAATIKGVVERLDKRG 80 (140)
T ss_dssp HHHHHHHHHHHH-SSBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 455677777653 689999999999999999998887776655
No 487
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=53.98 E-value=5.5 Score=29.57 Aligned_cols=42 Identities=7% Similarity=0.056 Sum_probs=33.1
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|... +++|..+||+.+++++..+.+.+......|
T Consensus 44 ~~~~iL~~l~~~-~~~t~~ela~~l~i~~~tvs~~l~~Le~~G 85 (155)
T 3cdh_A 44 PEWRVLACLVDN-DAMMITRLAKLSLMEQSRMTRIVDQMDARG 85 (155)
T ss_dssp HHHHHHHHHSSC-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 345567777653 689999999999999999988777766554
No 488
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=53.89 E-value=12 Score=31.86 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=54.2
Q ss_pred cCCCC-EEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCCe-eEEec--cCCCCC--CccceeEehh
Q 022515 128 FEGLN-SLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LANL-KYVGG--DMFEAI--SPADAVLLKW 197 (296)
Q Consensus 128 ~~~~~-~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri-~~~~~--D~~~~~--p~~D~v~~~~ 197 (296)
..++. +||-+|+ |.|.++..+++.. +.++++.+. ++-.+.+++. .+.+ ..... +..... .++|+++-.-
T Consensus 146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~ 224 (328)
T 1xa0_A 146 LTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV 224 (328)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECC
Confidence 34443 7999995 7889999999886 568888887 5555555432 2211 11111 111111 2478876532
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
.. ..+..+.+.+++ ||+++++-.
T Consensus 225 -----g~----~~~~~~~~~l~~---~G~~v~~G~ 247 (328)
T 1xa0_A 225 -----GG----RTLATVLSRMRY---GGAVAVSGL 247 (328)
T ss_dssp -----TT----TTHHHHHHTEEE---EEEEEECSC
T ss_pred -----cH----HHHHHHHHhhcc---CCEEEEEee
Confidence 11 136677888999 899887754
No 489
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=53.83 E-value=8.3 Score=28.07 Aligned_cols=42 Identities=19% Similarity=0.125 Sum_probs=33.1
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|... ++.|..+||+.+++++..+.+.+......|
T Consensus 34 ~~~~iL~~l~~~-~~~~~~~la~~l~~s~~tvs~~l~~L~~~g 75 (145)
T 2a61_A 34 AQFDILQKIYFE-GPKRPGELSVLLGVAKSTVTGLVKRLEADG 75 (145)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCchhHHHHHHHHHHCC
Confidence 455566777653 689999999999999999988777776654
No 490
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=53.67 E-value=11 Score=32.01 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=55.3
Q ss_pred EEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEecc--CCCCC--CccceeEehhhhccCCc
Q 022515 133 SLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGD--MFEAI--SPADAVLLKWILHDWND 204 (296)
Q Consensus 133 ~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D--~~~~~--p~~D~v~~~~vlh~~~d 204 (296)
+||=+| ||.|.++..+++.. +.++++++. ++-.+.+++ ..+.+ +-..+ ..... .++|+++-. ...
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~~~~d~v~d~-----~g~ 221 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSLGANRI-LSRDEFAESRPLEKQLWAGAIDT-----VGD 221 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTCSEE-EEGGGSSCCCSSCCCCEEEEEES-----SCH
T ss_pred eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCCEE-EecCCHHHHHhhcCCCccEEEEC-----CCc
Confidence 488888 47899999999987 569999887 666666654 22221 11111 11111 247876642 122
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515 205 EECVKILKKCKEAITSDGKKGKVIIIDM 232 (296)
Q Consensus 205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~ 232 (296)
..++.+.+.|+| +|+++.+-.
T Consensus 222 ----~~~~~~~~~l~~---~G~iv~~G~ 242 (324)
T 3nx4_A 222 ----KVLAKVLAQMNY---GGCVAACGL 242 (324)
T ss_dssp ----HHHHHHHHTEEE---EEEEEECCC
T ss_pred ----HHHHHHHHHHhc---CCEEEEEec
Confidence 268888999999 899988754
No 491
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=53.60 E-value=85 Score=27.36 Aligned_cols=90 Identities=22% Similarity=0.257 Sum_probs=50.8
Q ss_pred CCCCEEEEecCCch-HHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEe-hhhhccCCch
Q 022515 129 EGLNSLVDVGGGIG-TAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLL-KWILHDWNDE 205 (296)
Q Consensus 129 ~~~~~vLDvGgG~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~-~~vlh~~~d~ 205 (296)
..+.+|+--|+|+. ......+..-++.-..++|. |.-.-.-- ...+|.++.-+..... ..|.|++ .+..
T Consensus 317 ~~gk~v~~yGa~~~g~~l~~~~~~~~~~i~~~~D~~~~k~g~~~-~g~~ipi~~p~~~~~~-~~d~vl~~~~~~------ 388 (416)
T 4e2x_A 317 AEGRSVVGYGATAKSATVTNFCGIGPDLVHSVYDTTPDKQNRLT-PGAHIPVRPASAFSDP-YPDYALLFAWNH------ 388 (416)
T ss_dssp HTTCCEEEECCCSHHHHHHHHHTCCTTTSCCEEESCGGGTTEEC-TTTCCEEEEGGGCCSS-CCSEEEESCGGG------
T ss_pred HcCCeEEEEccccHHHHHHHhcCCCcceeeEEEeCCccccCccC-CCCCCcCCCHHHHhhc-CCCEEEEecchh------
Confidence 45678999998764 33333343333333334564 33111111 4567888877665532 3465544 3222
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515 206 ECVKILKKCKEAITSDGKKGKVIII 230 (296)
Q Consensus 206 ~~~~iL~~~~~aL~p~~~gG~lli~ 230 (296)
..+|++++.....- ||++++.
T Consensus 389 -~~ei~~~~~~~~~~---g~~~~~~ 409 (416)
T 4e2x_A 389 -AEEIMAKEQEFHQA---GGRWILY 409 (416)
T ss_dssp -HHHHHHHCHHHHHT---TCEEEEC
T ss_pred -HHHHHHHHHHHHhc---CCEEEEE
Confidence 34788888888877 8998763
No 492
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=53.51 E-value=12 Score=31.47 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=33.7
Q ss_pred CCCeeEEeccCCC---CCC--ccceeEehhhhc---cCCc---------------hHHHHHHHHHHHhcccCCCCcEEEE
Q 022515 173 LANLKYVGGDMFE---AIS--PADAVLLKWILH---DWND---------------EECVKILKKCKEAITSDGKKGKVII 229 (296)
Q Consensus 173 ~~ri~~~~~D~~~---~~p--~~D~v~~~~vlh---~~~d---------------~~~~~iL~~~~~aL~p~~~gG~lli 229 (296)
..++++++||..+ .++ .+|+|++.=-.+ .+.+ .....+++.+.++|+| ||.+++
T Consensus 19 ~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~---~G~l~i 95 (297)
T 2zig_A 19 FGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVP---GGRLVI 95 (297)
T ss_dssp --CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred ccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCC---CcEEEE
Confidence 4567888888876 233 488887742211 1100 1124678899999999 888776
Q ss_pred Ee
Q 022515 230 ID 231 (296)
Q Consensus 230 ~e 231 (296)
.-
T Consensus 96 ~~ 97 (297)
T 2zig_A 96 VV 97 (297)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 493
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=53.16 E-value=6.5 Score=28.79 Aligned_cols=44 Identities=25% Similarity=0.220 Sum_probs=34.1
Q ss_pred HHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 35 AIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 35 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
..++.++..|....++.|..+||+.+++++..+.+.+......|
T Consensus 35 ~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~g 78 (147)
T 2hr3_A 35 FSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGG 78 (147)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCC
Confidence 34566777776512789999999999999999988777766544
No 494
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=53.07 E-value=4.1 Score=30.16 Aligned_cols=43 Identities=5% Similarity=0.109 Sum_probs=32.7
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|...++++|..+||+.+++++..+.+.+......|
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~G 82 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERG 82 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCC
Confidence 4555666775434578999999999999999988777766544
No 495
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=52.92 E-value=4.7 Score=29.15 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=32.2
Q ss_pred HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++.++..|... ++.|..+||+.+++++..+.+.+......|
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~s~~tvs~~l~~L~~~g 71 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHVDKGTIARTLRRLEESG 71 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 44456667653 789999999999999999988777776654
No 496
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=52.79 E-value=5.4 Score=29.83 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++.++.||++.+|+++..+.++|......|
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~G 65 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEHG 65 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 689999999999999999999888877655
No 497
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=52.73 E-value=16 Score=26.98 Aligned_cols=43 Identities=7% Similarity=0.205 Sum_probs=32.8
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|...++++|..+||+.+++++..+.+.+......|
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~G 90 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDG 90 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCC
Confidence 3555777883223789999999999999999998777665543
No 498
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=52.69 E-value=5.9 Score=28.93 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=32.7
Q ss_pred HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
.++.++..|. . ++.|..+||+.+++++..+.+.+......|
T Consensus 38 ~~~~iL~~l~-~-~~~~~~ela~~l~~s~~tvs~~l~~Le~~g 78 (146)
T 2gxg_A 38 LDFLVLRATS-D-GPKTMAYLANRYFVTQSAITASVDKLEEMG 78 (146)
T ss_dssp HHHHHHHHHT-T-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh-c-CCcCHHHHHHHhCCCchhHHHHHHHHHHCC
Confidence 4555667777 3 799999999999999999988777766544
No 499
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=51.90 E-value=7.7 Score=26.71 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHh
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTW 74 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~ 74 (296)
++.++++||+.+|++++.+.+.+.+.
T Consensus 18 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 58999999999999999998755443
No 500
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=51.65 E-value=6.8 Score=26.87 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515 49 KPMTLNELVSALTINPSKSRCQLRTWFQND 78 (296)
Q Consensus 49 ~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~ 78 (296)
++.|..|||+.+|++...+.+.+..+...|
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g 64 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELG 64 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 689999999999999999999888776554
Done!