Query 022516
Match_columns 296
No_of_seqs 354 out of 1608
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:46:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xsd_C POU domain, class 3, tr 100.0 1E-35 3.5E-40 256.9 4.5 150 6-169 11-160 (164)
2 3l1p_A POU domain, class 5, tr 100.0 1.7E-35 5.8E-40 253.2 4.7 150 2-166 4-154 (155)
3 1au7_A Protein PIT-1, GHF-1; c 100.0 2.3E-35 8E-40 250.1 4.9 143 8-166 3-145 (146)
4 3d1n_I POU domain, class 6, tr 100.0 1.5E-34 5.2E-39 246.0 7.2 148 7-165 3-150 (151)
5 1e3o_C Octamer-binding transcr 100.0 3.7E-33 1.3E-37 239.7 5.9 152 7-166 6-159 (160)
6 2dms_A Homeobox protein OTX2; 99.8 1.2E-19 4.2E-24 138.2 8.4 66 101-171 5-70 (80)
7 2dmq_A LIM/homeobox protein LH 99.8 2.9E-19 9.8E-24 135.9 9.1 67 101-172 5-71 (80)
8 2cue_A Paired box protein PAX6 99.8 3.9E-19 1.3E-23 135.5 8.2 67 101-172 5-71 (80)
9 1puf_A HOX-1.7, homeobox prote 99.8 6.3E-19 2.2E-23 133.4 9.1 67 99-170 9-75 (77)
10 1nk2_P Homeobox protein VND; h 99.8 6.4E-19 2.2E-23 133.4 8.7 68 99-171 5-72 (77)
11 2dmu_A Homeobox protein goosec 99.8 5.8E-19 2E-23 131.1 7.6 63 101-168 5-67 (70)
12 2da3_A Alpha-fetoprotein enhan 99.8 3.8E-19 1.3E-23 135.0 6.7 65 99-168 13-77 (80)
13 2dmt_A Homeobox protein BARH-l 99.8 4.5E-19 1.5E-23 135.2 7.0 65 99-168 13-77 (80)
14 1b8i_A Ultrabithorax, protein 99.8 4.1E-19 1.4E-23 135.8 6.3 72 92-168 9-80 (81)
15 2da1_A Alpha-fetoprotein enhan 99.8 4.3E-19 1.5E-23 131.7 5.7 63 101-168 5-67 (70)
16 2cra_A Homeobox protein HOX-B1 99.8 3.4E-19 1.2E-23 132.4 4.8 63 101-168 5-67 (70)
17 2h1k_A IPF-1, pancreatic and d 99.8 8.4E-19 2.9E-23 127.7 6.8 60 103-167 3-62 (63)
18 2da2_A Alpha-fetoprotein enhan 99.8 4.5E-19 1.5E-23 131.6 5.3 64 100-168 4-67 (70)
19 1zq3_P PRD-4, homeotic bicoid 99.8 1.4E-18 4.8E-23 128.5 7.7 64 103-171 2-65 (68)
20 1ahd_P Antennapedia protein mu 99.8 9.1E-19 3.1E-23 129.6 6.5 63 103-170 2-64 (68)
21 2hdd_A Protein (engrailed home 99.8 8.7E-19 3E-23 126.8 6.0 58 103-165 3-60 (61)
22 1ig7_A Homeotic protein MSX-1; 99.8 1.3E-18 4.3E-23 124.5 6.7 57 104-165 1-57 (58)
23 2e1o_A Homeobox protein PRH; D 99.8 1.6E-18 5.6E-23 128.7 7.6 62 102-168 6-67 (70)
24 1fjl_A Paired protein; DNA-bin 99.8 1.6E-18 5.5E-23 132.3 7.6 64 100-168 15-78 (81)
25 2vi6_A Homeobox protein nanog; 99.8 4.2E-19 1.4E-23 128.9 4.1 60 103-167 3-62 (62)
26 2kt0_A Nanog, homeobox protein 99.7 1.1E-18 3.8E-23 133.9 6.2 65 99-168 18-82 (84)
27 2da4_A Hypothetical protein DK 99.7 9.9E-19 3.4E-23 133.1 5.9 66 99-169 4-73 (80)
28 1ftt_A TTF-1 HD, thyroid trans 99.7 1.6E-18 5.6E-23 128.1 6.8 63 103-170 2-64 (68)
29 2l7z_A Homeobox protein HOX-A1 99.7 1.6E-18 5.6E-23 129.9 6.6 65 100-169 4-68 (73)
30 3a01_A Homeodomain-containing 99.7 3.1E-18 1.1E-22 134.3 8.5 68 99-171 13-80 (93)
31 2cuf_A FLJ21616 protein; homeo 99.7 3.5E-18 1.2E-22 134.3 8.7 65 101-170 5-84 (95)
32 1jgg_A Segmentation protein EV 99.7 2.2E-18 7.4E-23 124.3 6.5 58 104-166 2-59 (60)
33 2djn_A Homeobox protein DLX-5; 99.7 7.3E-19 2.5E-23 130.6 3.9 63 101-168 5-67 (70)
34 1yz8_P Pituitary homeobox 2; D 99.7 1.4E-18 4.7E-23 128.5 4.8 64 102-170 2-65 (68)
35 1bw5_A ISL-1HD, insulin gene e 99.7 1.2E-18 4.1E-23 128.0 4.4 62 102-168 2-63 (66)
36 2k40_A Homeobox expressed in E 99.7 2.9E-18 1E-22 126.2 5.7 61 104-169 2-62 (67)
37 2da6_A Hepatocyte nuclear fact 99.7 1.1E-17 3.8E-22 133.3 9.3 72 100-172 3-91 (102)
38 3rkq_A Homeobox protein NKX-2. 99.7 4.4E-18 1.5E-22 121.2 6.2 57 103-164 2-58 (58)
39 2r5y_A Homeotic protein sex co 99.7 2.6E-18 9E-23 133.1 5.3 63 100-167 25-87 (88)
40 2m0c_A Homeobox protein arista 99.7 3.8E-18 1.3E-22 127.9 6.0 65 100-169 6-70 (75)
41 3a02_A Homeobox protein arista 99.7 3.2E-18 1.1E-22 123.4 5.3 58 106-168 2-59 (60)
42 2hi3_A Homeodomain-only protei 99.7 1.1E-17 3.7E-22 125.4 7.9 62 104-170 3-65 (73)
43 1wh5_A ZF-HD homeobox family p 99.7 3.3E-18 1.1E-22 130.8 4.8 62 99-165 13-78 (80)
44 2ecb_A Zinc fingers and homeob 99.7 1.1E-17 3.6E-22 130.6 7.7 58 109-171 17-74 (89)
45 1b72_A Protein (homeobox prote 99.7 7.5E-18 2.6E-22 132.9 6.8 64 101-169 32-95 (97)
46 1akh_A Protein (mating-type pr 99.7 4.5E-18 1.5E-22 122.8 5.0 59 101-164 3-61 (61)
47 2ecc_A Homeobox and leucine zi 99.7 1.1E-17 3.9E-22 126.7 7.1 60 106-170 6-65 (76)
48 1uhs_A HOP, homeodomain only p 99.7 1.4E-17 4.8E-22 124.3 7.6 63 104-170 2-64 (72)
49 3a03_A T-cell leukemia homeobo 99.7 9.1E-18 3.1E-22 119.5 6.2 54 108-166 2-55 (56)
50 2da5_A Zinc fingers and homeob 99.7 1.3E-17 4.3E-22 125.8 6.7 61 105-170 9-69 (75)
51 1b72_B Protein (PBX1); homeodo 99.7 1.2E-17 4E-22 128.9 6.0 62 104-170 2-66 (87)
52 2ly9_A Zinc fingers and homeob 99.7 1.5E-17 5.1E-22 124.6 6.0 63 102-169 5-67 (74)
53 1puf_B PRE-B-cell leukemia tra 99.7 2.3E-17 7.7E-22 123.4 6.9 62 104-170 2-66 (73)
54 2dn0_A Zinc fingers and homeob 99.7 1.1E-17 3.7E-22 126.3 5.2 62 103-169 8-69 (76)
55 1wh7_A ZF-HD homeobox family p 99.7 7.2E-18 2.5E-22 129.0 4.0 62 99-165 13-78 (80)
56 3nar_A ZHX1, zinc fingers and 99.7 1.2E-17 4.2E-22 131.5 5.1 66 99-169 21-86 (96)
57 2dmn_A Homeobox protein TGIF2L 99.7 6.6E-17 2.3E-21 124.2 8.9 68 101-172 5-74 (83)
58 2dmp_A Zinc fingers and homeob 99.7 6.4E-17 2.2E-21 125.9 8.7 59 108-171 18-76 (89)
59 1x2n_A Homeobox protein pknox1 99.7 6.6E-17 2.3E-21 120.9 7.7 65 101-169 5-71 (73)
60 1du6_A PBX1, homeobox protein 99.7 2.5E-17 8.5E-22 120.1 3.3 58 103-165 3-63 (64)
61 1lfb_A Liver transcription fac 99.7 2.5E-17 8.5E-22 130.9 2.8 71 99-170 5-92 (99)
62 1k61_A Mating-type protein alp 99.6 2E-16 6.9E-21 113.8 5.9 57 106-166 1-59 (60)
63 2cqx_A LAG1 longevity assuranc 99.6 6.6E-17 2.3E-21 121.2 3.3 59 104-167 9-68 (72)
64 1wi3_A DNA-binding protein SAT 99.6 2.7E-16 9.2E-21 116.2 6.3 61 99-163 3-63 (71)
65 1ic8_A Hepatocyte nuclear fact 99.6 2.9E-17 9.9E-22 145.0 0.9 139 11-165 29-193 (194)
66 3nau_A Zinc fingers and homeob 99.6 2.4E-16 8.3E-21 116.0 5.7 52 111-167 12-63 (66)
67 2l9r_A Homeobox protein NKX-3. 99.6 1.3E-16 4.5E-21 118.8 3.3 57 108-169 9-65 (69)
68 1mnm_C Protein (MAT alpha-2 tr 99.6 5.3E-16 1.8E-20 119.9 6.5 58 102-164 26-86 (87)
69 2e19_A Transcription factor 8; 99.6 2.6E-16 8.8E-21 115.4 3.2 54 107-165 7-60 (64)
70 1le8_B Mating-type protein alp 99.6 8.3E-16 2.8E-20 117.9 5.7 61 105-169 4-66 (83)
71 1x2m_A LAG1 longevity assuranc 99.6 3.7E-16 1.3E-20 114.7 2.6 51 112-166 9-59 (64)
72 2d5v_A Hepatocyte nuclear fact 99.6 1.4E-15 4.9E-20 130.3 4.0 64 100-168 94-157 (164)
73 3k2a_A Homeobox protein MEIS2; 99.5 6.6E-15 2.3E-19 108.6 4.7 56 109-169 4-62 (67)
74 2h8r_A Hepatocyte nuclear fact 99.4 1.9E-13 6.5E-18 122.4 5.2 64 99-163 138-218 (221)
75 2da7_A Zinc finger homeobox pr 99.4 3.3E-13 1.1E-17 100.2 5.4 46 112-162 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.3 2.1E-12 7.3E-17 100.4 7.5 61 108-172 10-72 (89)
77 1mh3_A Maltose binding-A1 home 99.2 5.3E-12 1.8E-16 119.8 2.7 56 104-164 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 2.5E-09 8.6E-14 69.9 1.5 23 150-172 1-23 (37)
79 2ys9_A Homeobox and leucine zi 94.0 0.039 1.3E-06 40.6 3.2 38 115-157 18-55 (70)
80 1hlv_A CENP-B, major centromer 71.2 7.4 0.00025 30.1 5.7 51 106-164 4-54 (131)
81 2glo_A Brinker CG9653-PA; prot 69.3 7.9 0.00027 26.1 4.8 46 107-158 3-48 (59)
82 3hug_A RNA polymerase sigma fa 68.4 6.8 0.00023 28.8 4.6 49 110-168 38-86 (92)
83 2elh_A CG11849-PA, LD40883P; s 63.9 8.3 0.00028 28.2 4.3 44 104-157 17-60 (87)
84 2x7l_M HIV REV; nuclear export 61.6 6.6 0.00023 31.2 3.4 37 115-170 15-51 (115)
85 2o8x_A Probable RNA polymerase 59.4 9.2 0.00032 25.9 3.6 47 109-165 15-61 (70)
86 1jko_C HIN recombinase, DNA-in 52.2 6.7 0.00023 24.7 1.8 43 109-161 5-47 (52)
87 3mzy_A RNA polymerase sigma-H 51.7 16 0.00055 28.4 4.4 49 109-168 109-157 (164)
88 3lph_A Protein REV; helix-loop 51.6 10 0.00036 27.6 2.8 37 115-170 18-54 (72)
89 1tc3_C Protein (TC3 transposas 51.2 18 0.00063 22.0 3.8 40 109-158 5-44 (51)
90 1s7o_A Hypothetical UPF0122 pr 50.9 20 0.00069 27.7 4.7 49 109-167 22-70 (113)
91 1p4w_A RCSB; solution structur 49.7 25 0.00085 26.6 5.0 46 107-163 32-77 (99)
92 2rgt_A Fusion of LIM/homeobox 48.9 0.28 9.6E-06 40.9 -6.9 30 101-131 134-163 (169)
93 1fi6_A EH domain protein REPS1 48.9 16 0.00056 26.4 3.7 46 108-157 1-50 (92)
94 1ku3_A Sigma factor SIGA; heli 45.5 27 0.00092 24.2 4.3 46 109-164 10-59 (73)
95 1xsv_A Hypothetical UPF0122 pr 43.9 24 0.00083 27.2 4.1 49 110-168 26-74 (113)
96 2lv7_A Calcium-binding protein 43.4 46 0.0016 24.7 5.6 48 106-157 26-79 (100)
97 3c57_A Two component transcrip 42.7 24 0.00081 26.1 3.8 47 109-166 27-73 (95)
98 2jn6_A Protein CGL2762, transp 42.4 20 0.00069 26.2 3.3 42 107-157 3-45 (97)
99 1c07_A Protein (epidermal grow 41.1 19 0.00065 26.3 3.0 46 108-157 2-51 (95)
100 1or7_A Sigma-24, RNA polymeras 39.3 30 0.001 27.9 4.2 48 110-167 141-188 (194)
101 1fse_A GERE; helix-turn-helix 37.2 31 0.0011 23.4 3.5 47 107-164 9-55 (74)
102 2rnj_A Response regulator prot 36.5 29 0.001 25.1 3.4 45 109-164 29-73 (91)
103 1rp3_A RNA polymerase sigma fa 35.9 36 0.0012 28.2 4.3 49 109-167 187-235 (239)
104 1tty_A Sigma-A, RNA polymerase 35.0 29 0.00098 25.1 3.1 51 109-165 18-68 (87)
105 2p7v_B Sigma-70, RNA polymeras 34.8 25 0.00086 24.0 2.6 50 109-164 5-54 (68)
106 3i5g_B Myosin regulatory light 34.6 65 0.0022 25.3 5.5 42 105-150 5-50 (153)
107 1je8_A Nitrate/nitrite respons 32.2 35 0.0012 24.4 3.2 46 108-164 20-65 (82)
108 4ich_A Transcriptional regulat 30.9 9 0.00031 33.9 -0.4 42 115-162 126-167 (311)
109 2qko_A Possible transcriptiona 30.3 24 0.00082 28.6 2.2 48 114-167 33-80 (215)
110 2q1z_A RPOE, ECF SIGE; ECF sig 29.9 20 0.00068 28.8 1.6 23 144-166 160-182 (184)
111 2q24_A Putative TETR family tr 29.2 20 0.00067 28.6 1.4 43 113-162 19-61 (194)
112 1x3u_A Transcriptional regulat 28.9 29 0.001 24.0 2.2 44 110-164 17-60 (79)
113 2iai_A Putative transcriptiona 28.8 44 0.0015 27.5 3.7 44 113-162 34-77 (230)
114 3dcf_A Transcriptional regulat 28.5 43 0.0015 26.7 3.4 43 113-161 35-77 (218)
115 1iuf_A Centromere ABP1 protein 26.8 1.2E+02 0.0042 23.9 5.9 52 104-158 6-59 (144)
116 2jpc_A SSRB; DNA binding prote 26.4 61 0.0021 21.1 3.4 41 114-165 3-43 (61)
117 3ulq_B Transcriptional regulat 25.4 78 0.0027 23.2 4.1 46 105-161 25-70 (90)
118 2pmy_A RAS and EF-hand domain- 25.3 36 0.0012 24.1 2.2 46 108-157 19-68 (91)
119 2i10_A Putative TETR transcrip 25.2 44 0.0015 27.0 2.9 48 112-165 14-61 (202)
120 2hxi_A Putative transcriptiona 24.5 39 0.0013 28.9 2.5 53 105-163 24-77 (241)
121 2rn7_A IS629 ORFA; helix, all 24.1 96 0.0033 22.8 4.5 47 107-157 4-52 (108)
122 1j7q_A CAVP, calcium vector pr 23.9 1.1E+02 0.0039 20.7 4.6 45 108-156 6-59 (86)
123 1u78_A TC3 transposase, transp 23.1 86 0.0029 23.7 4.1 41 108-158 5-45 (141)
124 3ccy_A Putative TETR-family tr 21.8 60 0.0021 25.9 3.1 44 113-162 18-61 (203)
125 1pdn_C Protein (PRD paired); p 21.6 2.3E+02 0.008 20.5 7.3 45 109-158 75-126 (128)
126 3kz9_A SMCR; transcriptional r 21.4 37 0.0013 26.8 1.7 42 114-161 22-63 (206)
127 1iq3_A Ralbp1-interacting prot 21.0 39 0.0013 25.6 1.6 48 106-157 12-63 (110)
128 1u78_A TC3 transposase, transp 20.7 1.3E+02 0.0043 22.7 4.7 44 109-161 60-105 (141)
129 1irz_A ARR10-B; helix-turn-hel 20.6 1.6E+02 0.0053 20.8 4.6 58 104-165 4-62 (64)
No 1
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=100.00 E-value=1e-35 Score=256.86 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=120.2
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCC
Q 022516 6 IREAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRL 85 (296)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~l~~lr~qi~~~~~ic~~~~~~~k~l~~~~~~~~sg~~~ 85 (296)
..+|||+||++||||||++||||+||+.++|.+||++|++++|++|+++..+++++|+..+.+.+|+...........
T Consensus 11 ~~~~l~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~-- 88 (164)
T 2xsd_C 11 SSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPT-- 88 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC--------
T ss_pred chhHHHHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccCCCc--
Confidence 358999999999999999999999999999999999999999999999999999999999999999976544331110
Q ss_pred CCcccCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 86 GNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 86 g~~~~~p~~~s~~~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
...+ ....+++||+|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||
T Consensus 89 ---~~~~----~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr 156 (164)
T 2xsd_C 89 ---NLDK----IAAQGRKRKKRTSIEVGVKGALESHFLK-CPKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKR 156 (164)
T ss_dssp ------------------------CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTB
T ss_pred ---cccc----ccccccCCCCceeccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhh
Confidence 0011 1134566889999999999999999999 8999999999999999 99999999999999999999
Q ss_pred Hhhh
Q 022516 166 KQLV 169 (296)
Q Consensus 166 ~~~~ 169 (296)
..+.
T Consensus 157 ~~~~ 160 (164)
T 2xsd_C 157 MTPA 160 (164)
T ss_dssp SCC-
T ss_pred ccCC
Confidence 7653
No 2
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=100.00 E-value=1.7e-35 Score=253.20 Aligned_cols=150 Identities=18% Similarity=0.229 Sum_probs=129.0
Q ss_pred cchhHHHHHHHHHHhhhhhhhccCCCCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-
Q 022516 2 EWDNIREAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAA- 80 (296)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~l~~lr~qi~~~~~ic~~~~~~~k~l~~~~~~~~- 80 (296)
+=+.+.+||++||++||||||++||||+|||.|+|.+||++|++++|++|++...++++||+..+.+.+|+........
T Consensus 4 d~~~~~~~l~~fa~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~ 83 (155)
T 3l1p_A 4 DMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENL 83 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHHHHHhhhheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhhhcccCc
Confidence 4467889999999999999999999999999999999999999999999999999999999999999999965442110
Q ss_pred cCCCCCCcccCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhH
Q 022516 81 AGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRR 160 (296)
Q Consensus 81 sg~~~g~~~~~p~~~s~~~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRR 160 (296)
... +.+. . ...++||.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||
T Consensus 84 ~~~------~~~~--~--~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR 148 (155)
T 3l1p_A 84 QEI------SKSE--T--LVQARKRKRTSIENRVRWSLETMFLK-SPKPSLQQITHIANQL----GLEKDVVRVWFSNRR 148 (155)
T ss_dssp HHS------SCC-------CCCSCCCCCCCCHHHHHHHHTTTTT-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHH
T ss_pred ccc------cccc--c--cccCCCCCCcccCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHc----CCChhheeecccccc
Confidence 010 0100 0 11356788999999999999999999 7999999999999999 999999999999999
Q ss_pred HHHHHH
Q 022516 161 ARSKRK 166 (296)
Q Consensus 161 aK~Kr~ 166 (296)
+|+||.
T Consensus 149 ~k~Kr~ 154 (155)
T 3l1p_A 149 QKGKRS 154 (155)
T ss_dssp HHHHC-
T ss_pred ccccCC
Confidence 999974
No 3
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=100.00 E-value=2.3e-35 Score=250.11 Aligned_cols=143 Identities=20% Similarity=0.278 Sum_probs=121.9
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCC
Q 022516 8 EAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGN 87 (296)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~l~~lr~qi~~~~~ic~~~~~~~k~l~~~~~~~~sg~~~g~ 87 (296)
+|||+||++|+||||++||||+|||.|+|.+||+++|+++|++|+++...+++||+..+.+.+|+....... +
T Consensus 3 ~~l~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~--~----- 75 (146)
T 1au7_A 3 RALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVG--A----- 75 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC----------
T ss_pred cHHHHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhccc--C-----
Confidence 789999999999999999999999999999999999999999999999999999999999999986654322 0
Q ss_pred cccCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHH
Q 022516 88 IYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (296)
Q Consensus 88 ~~~~p~~~s~~~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~ 166 (296)
.... ..+..++.||.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||+
T Consensus 76 ~~~~----~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 76 LYNE----KVGANERKRKRRTTISIAAKDALERHFGE-HSKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----------------CCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred ccCc----ccCCCCCCCCCCcCccHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 0011 11134566788999999999999999999 8999999999999999 999999999999999999985
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=246.01 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=127.9
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCC
Q 022516 7 REAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLG 86 (296)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~l~~lr~qi~~~~~ic~~~~~~~k~l~~~~~~~~sg~~~g 86 (296)
.||+++||++|+||||++||||++||.|+|.+||+++|+++|++|++...+++++|+..+.+.+|+.........+....
T Consensus 3 ~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~~~ 82 (151)
T 3d1n_I 3 MEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNL 82 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCcccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999966544322222111
Q ss_pred CcccCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 87 NIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 87 ~~~~~p~~~s~~~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
... ..+...++||+|+.|+..|+.+||.+|.. ++||+..+|.+||..| ||++++|+|||||||+|+||
T Consensus 83 ~~~------~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 83 MEF------VGGEPSKKRKRRTSFTPQAIEALNAYFEK-NPLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp HHH------HCSSCCCCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred ccc------CCCCCCCCCCCCcccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 000 11133466789999999999999999999 8999999999999999 99999999999999999986
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.97 E-value=3.7e-33 Score=239.75 Aligned_cols=152 Identities=18% Similarity=0.230 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCC
Q 022516 7 REAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLG 86 (296)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~l~~lr~qi~~~~~ic~~~~~~~k~l~~~~~~~~sg~~~g 86 (296)
-+||++||+.|+++|+++|++|++|+.++|.+||++|++++|++|+.+..++++||+..+.+.+|+.............+
T Consensus 6 ~~~~~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~~~~~~ 85 (160)
T 1e3o_C 6 LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLS 85 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhHHHHHHhhhcccccCCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999965442221111111
Q ss_pred --CcccCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHH
Q 022516 87 --NIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (296)
Q Consensus 87 --~~~~~p~~~s~~~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (296)
+....|. . .+..++||.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+|
T Consensus 86 s~~~~~~~~--~-~~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~k 157 (160)
T 1e3o_C 86 SPSALNSPG--I-EGLSRRRKKRTSIETNIRVALEKSFME-NQKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEK 157 (160)
T ss_dssp ---------------------CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHT
T ss_pred CCCCcCCCC--C-CCCCCCCcCccccCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhh
Confidence 1111111 1 133467889999999999999999999 8999999999999999 9999999999999999999
Q ss_pred HH
Q 022516 165 RK 166 (296)
Q Consensus 165 r~ 166 (296)
|.
T Consensus 158 r~ 159 (160)
T 1e3o_C 158 RI 159 (160)
T ss_dssp SC
T ss_pred cc
Confidence 85
No 6
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=1.2e-19 Score=138.20 Aligned_cols=66 Identities=32% Similarity=0.534 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhhc
Q 022516 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~ 171 (296)
++.+|.|+.|+.+|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+......
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAK-TRYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 456889999999999999999999 7999999999999999 99999999999999999999876543
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=135.95 Aligned_cols=67 Identities=24% Similarity=0.392 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhhcc
Q 022516 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSS 172 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~~ 172 (296)
...+|.|+.|+.+|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||.......
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~~~~ 71 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAI-NHNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLLRQEN 71 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHHHHhc
Confidence 356889999999999999999999 7999999999999999 999999999999999999998775433
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=3.9e-19 Score=135.48 Aligned_cols=67 Identities=25% Similarity=0.450 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhhcc
Q 022516 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSS 172 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~~ 172 (296)
...+|.|+.|+..|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+..+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~~~ 71 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFER-THYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKLRNQ 71 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhhhhc
Confidence 356788999999999999999999 7999999999999999 999999999999999999999876544
No 9
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.78 E-value=6.3e-19 Score=133.39 Aligned_cols=67 Identities=25% Similarity=0.271 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhh
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (296)
+.+..+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| ||++.+|+|||||||+|+|+..+..
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLF-NMYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 45567889999999999999999999 7999999999999999 9999999999999999999987653
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.77 E-value=6.4e-19 Score=133.36 Aligned_cols=68 Identities=26% Similarity=0.268 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhhc
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~ 171 (296)
..++.+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++.+|+|||||||+|+|+......
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQ-QRYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhcccc
Confidence 45567889999999999999999999 7999999999999999 99999999999999999999877643
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.8e-19 Score=131.08 Aligned_cols=63 Identities=30% Similarity=0.464 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
...+|.|+.|+.+|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQE-TKYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CCCHHHeehccccccccccccCC
Confidence 345788999999999999999999 8999999999999999 99999999999999999999755
No 12
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-19 Score=135.02 Aligned_cols=65 Identities=31% Similarity=0.449 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
...+.+|.|+.|+.+|+.+||.+|.. ++||+..+|.+||..| +|++.+|+|||||||+|+||.+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLL-DSNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhcc
Confidence 44567889999999999999999999 7999999999999999 99999999999999999998654
No 13
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=135.15 Aligned_cols=65 Identities=29% Similarity=0.348 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
..++.+|.|+.|+.+|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEK-QKYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcccC
Confidence 34567889999999999999999999 7999999999999999 99999999999999999998654
No 14
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.76 E-value=4.1e-19 Score=135.82 Aligned_cols=72 Identities=29% Similarity=0.409 Sum_probs=56.0
Q ss_pred CCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 92 PLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 92 p~~~s~~~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
|.+...+.....+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| ||++++|+|||||||+|+||..+
T Consensus 9 p~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 9 PWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHT-NHYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp TTCC-----------CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CccccCCCCCCCCCCCcccCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhcc
Confidence 333333344567889999999999999999999 7999999999999999 99999999999999999998653
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=4.3e-19 Score=131.67 Aligned_cols=63 Identities=25% Similarity=0.432 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
...+|.|+.|+.+|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+..+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDI-NNSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHH-CSSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhcc
Confidence 456789999999999999999999 8999999999999999 99999999999999999999754
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=3.4e-19 Score=132.42 Aligned_cols=63 Identities=27% Similarity=0.394 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
...+|.|+.|+..|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAA-NKFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccCC
Confidence 456788999999999999999999 8999999999999999 99999999999999999998654
No 17
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.76 E-value=8.4e-19 Score=127.72 Aligned_cols=60 Identities=33% Similarity=0.426 Sum_probs=56.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHh
Q 022516 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (296)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (296)
.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF-NKYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 4788999999999999999999 7999999999999999 9999999999999999999863
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-19 Score=131.58 Aligned_cols=64 Identities=22% Similarity=0.418 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
..+.++.|+.|+.+|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDA-NAYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhccc
Confidence 3456789999999999999999999 8999999999999999 99999999999999999998654
No 19
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=1.4e-18 Score=128.46 Aligned_cols=64 Identities=28% Similarity=0.374 Sum_probs=60.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhhc
Q 022516 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (296)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~ 171 (296)
.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ-GRYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 4788999999999999999999 7999999999999999 99999999999999999999887543
No 20
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.75 E-value=9.1e-19 Score=129.57 Aligned_cols=63 Identities=30% Similarity=0.370 Sum_probs=59.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhh
Q 022516 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (296)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (296)
++|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++++|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF-NRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH-CSSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhcccc
Confidence 4788999999999999999999 7999999999999999 9999999999999999999987643
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=8.7e-19 Score=126.76 Aligned_cols=58 Identities=26% Similarity=0.475 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE-NRYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 4788999999999999999999 8999999999999999 99999999999999999997
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=1.3e-18 Score=124.50 Aligned_cols=57 Identities=40% Similarity=0.496 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
||.|+.|+.+|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ-KQYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999 7999999999999999 99999999999999999997
No 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.6e-18 Score=128.72 Aligned_cols=62 Identities=31% Similarity=0.323 Sum_probs=58.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
..++.|+.|+.+|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+|+...
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET-QKYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCCC
Confidence 45678999999999999999999 7999999999999999 99999999999999999999765
No 24
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.75 E-value=1.6e-18 Score=132.26 Aligned_cols=64 Identities=31% Similarity=0.491 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
.++.+|.|+.|+..|+.+||.+|.. ++||+..+|.+||..| ||++.+|+|||||||+|+|+...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFER-TQYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhcc
Confidence 4567889999999999999999999 7999999999999999 99999999999999999999865
No 25
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.75 E-value=4.2e-19 Score=128.85 Aligned_cols=60 Identities=32% Similarity=0.426 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHh
Q 022516 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (296)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (296)
.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||.+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK-QKYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 5788999999999999999999 7999999999999999 9999999999999999999853
No 26
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=133.85 Aligned_cols=65 Identities=31% Similarity=0.372 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
...+.+|.|+.|+..|+.+||.+|.. ++||+..+|.+||..| ||++++|+|||||||+|+||.++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQR-QKYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHH-SSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHhh
Confidence 44567889999999999999999999 7999999999999999 99999999999999999998754
No 27
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.9e-19 Score=133.14 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhh
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQGT----GTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n----~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (296)
..++.+|.|+.|+.+|+.+||.+|.. + +||+..+|.+||..| +|++.+|+|||||||+|+|+....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDN-GMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTT-TTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhccCC
Confidence 44567889999999999999999999 8 999999999999999 999999999999999999996544
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=1.6e-18 Score=128.11 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=59.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhh
Q 022516 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (296)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (296)
++|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ-QKYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH-SSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 4788999999999999999999 7999999999999999 9999999999999999999987643
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.74 E-value=1.6e-18 Score=129.92 Aligned_cols=65 Identities=31% Similarity=0.369 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhh
Q 022516 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (296)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (296)
....+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYAT-NKFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHH-TSCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-CCCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHhcc
Confidence 3456889999999999999999999 7999999999999999 999999999999999999997654
No 30
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=3.1e-18 Score=134.30 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhhc
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~ 171 (296)
...+.+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| ||++.+|+|||||||+|+|+......
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHK-QKYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHHHH
Confidence 34566889999999999999999999 7999999999999999 99999999999999999999877543
No 31
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=3.5e-18 Score=134.31 Aligned_cols=65 Identities=31% Similarity=0.518 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCC---------------cccchhhchhhhhHHHHHH
Q 022516 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ---------------ISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~g---------------Ls~~qV~vWFQNRRaK~Kr 165 (296)
.+.+|.|+.|+++|+.+||.+|.. ++||+..+|++||..| + |++.+|+|||||||+|+|+
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~-~~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNE-NQYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999 8999999999999999 8 9999999999999999999
Q ss_pred Hhhhh
Q 022516 166 KQLVS 170 (296)
Q Consensus 166 ~~~~~ 170 (296)
+....
T Consensus 80 ~~~~~ 84 (95)
T 2cuf_A 80 RANIA 84 (95)
T ss_dssp HHHCC
T ss_pred Hhhcc
Confidence 98764
No 32
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=2.2e-18 Score=124.27 Aligned_cols=58 Identities=34% Similarity=0.472 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHH
Q 022516 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (296)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~ 166 (296)
+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK-ENYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 678999999999999999999 7999999999999999 999999999999999999985
No 33
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.3e-19 Score=130.62 Aligned_cols=63 Identities=25% Similarity=0.375 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
...+|.|+.|+.+|+.+||.+|.. ++||+..++.+||..| +|++.+|+|||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQK-TQYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcC-CCCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccCC
Confidence 356788999999999999999999 8999999999999999 99999999999999999988643
No 34
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.73 E-value=1.4e-18 Score=128.46 Aligned_cols=64 Identities=34% Similarity=0.470 Sum_probs=59.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhh
Q 022516 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (296)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (296)
+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR-NRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT-CSSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 35788999999999999999999 8999999999999999 9999999999999999999987643
No 35
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=1.2e-18 Score=127.96 Aligned_cols=62 Identities=21% Similarity=0.375 Sum_probs=58.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
+.+|.|+.|+.+|+.+||.+|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA-NPRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHhh
Confidence 35788999999999999999999 8999999999999999 99999999999999999988653
No 36
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=126.20 Aligned_cols=61 Identities=30% Similarity=0.488 Sum_probs=58.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhh
Q 022516 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (296)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (296)
||.|+.|+.+|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV-NCYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhchh
Confidence 678999999999999999999 8999999999999999 999999999999999999987654
No 37
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=133.31 Aligned_cols=72 Identities=33% Similarity=0.567 Sum_probs=63.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhh-------------cC----CcccchhhchhhhhHHH
Q 022516 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQ-------------HG----QISETNVYNWFQNRRAR 162 (296)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~-------------~~----gLs~~qV~vWFQNRRaK 162 (296)
.++.||.|+.|++.|+.+||..|.. ++||+..+|++||..|+. |+ .|++.+|+|||||||+|
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~-~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDR-QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 3467889999999999999999999 899999999999999942 33 78999999999999999
Q ss_pred HHHHhhhhcc
Q 022516 163 SKRKQLVSSS 172 (296)
Q Consensus 163 ~Kr~~~~~~~ 172 (296)
+|++.+....
T Consensus 82 ~kr~~~~~~~ 91 (102)
T 2da6_A 82 EAFRQKLAMD 91 (102)
T ss_dssp HHHHHHHHHS
T ss_pred HHHhhHhhhc
Confidence 9999877644
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.72 E-value=4.4e-18 Score=121.17 Aligned_cols=57 Identities=32% Similarity=0.399 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHH
Q 022516 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (296)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (296)
++|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ-QRYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 4678999999999999999999 7999999999999999 9999999999999999985
No 39
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.72 E-value=2.6e-18 Score=133.12 Aligned_cols=63 Identities=30% Similarity=0.389 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHh
Q 022516 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (296)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (296)
....+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| ||++++|+|||||||+|+||..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHF-NRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 3456889999999999999999999 7999999999999999 9999999999999999999864
No 40
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=127.85 Aligned_cols=65 Identities=31% Similarity=0.482 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhh
Q 022516 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (296)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (296)
..+.+|.|+.|+..|+.+||..|.. ++||+..++.+||..| ||++.+|+|||||||+|+||..+.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQK-THYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHhh
Confidence 3456788999999999999999999 7999999999999999 999999999999999999997654
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.72 E-value=3.2e-18 Score=123.40 Aligned_cols=58 Identities=31% Similarity=0.518 Sum_probs=50.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 106 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
.|+.||.+|+.+||..|.. ++||+..++.+||..| ||++++|+|||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR-THYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999 8999999999999999 99999999999999999998764
No 42
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1.1e-17 Score=125.36 Aligned_cols=62 Identities=27% Similarity=0.404 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhh
Q 022516 104 ARQRWTPTPVQLQILESIFD-QGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (296)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~-~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (296)
++.|+.|+.+|+.+||..|. . ++||+..+|.+||..| ||++++|+|||||||+|+||.....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~-~~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV-NKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT-TSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhccCC
Confidence 56789999999999999999 6 6999999999999999 9999999999999999999987543
No 43
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.72 E-value=3.3e-18 Score=130.79 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
+..+.+|.||.|+.+|+.+||.+|+. + +||+..+|++||..| +|++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~-~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRI-QRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCC-CTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcC-CCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 34567889999999999999999998 5 899999999999999 99999999999999999874
No 44
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.1e-17 Score=130.60 Aligned_cols=58 Identities=14% Similarity=0.359 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhhc
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~ 171 (296)
.||.+||.+||..|.. ++||+..+|.+||..| ||+++||+|||||||+|||++.....
T Consensus 17 ~~t~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLN-SSVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHHhh
Confidence 7899999999999999 8999999999999999 99999999999999999998766543
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=7.5e-18 Score=132.90 Aligned_cols=64 Identities=33% Similarity=0.393 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhh
Q 022516 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (296)
...++.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+|+..+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHF-NKYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhcc
Confidence 456788999999999999999999 7999999999999999 999999999999999999998764
No 46
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.71 E-value=4.5e-18 Score=122.81 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHH
Q 022516 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (296)
.+.++.|+.|+..|+.+||.+|.. ++||+..++.+||..| ||++.+|+|||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~-~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRR-KQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-CCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 356788999999999999999999 7999999999999999 9999999999999999975
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-17 Score=126.73 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=56.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhh
Q 022516 106 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (296)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (296)
.|..||.+|+.+||..|.. ++||+..+|++||..| ||++++|+|||||||+|+|+.+..-
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~-~~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQ-CQWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 4667999999999999999 8999999999999999 9999999999999999999986653
No 48
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.4e-17 Score=124.30 Aligned_cols=63 Identities=25% Similarity=0.351 Sum_probs=57.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhh
Q 022516 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (296)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (296)
.+.|+.|+..|+.+||..|...++||+..+|.+||..| ||++++|+|||||||+|+|+.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhccCC
Confidence 45789999999999999999426999999999999999 9999999999999999999987543
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.71 E-value=9.1e-18 Score=119.54 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHH
Q 022516 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (296)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~ 166 (296)
|.|+..|+.+||..|.. ++||+..+|.+||..| ||++++|+|||||||+|+||.
T Consensus 2 T~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR-QKYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh-cCCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 57999999999999999 7999999999999999 999999999999999999986
No 50
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=125.76 Aligned_cols=61 Identities=23% Similarity=0.445 Sum_probs=56.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhh
Q 022516 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (296)
Q Consensus 105 R~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (296)
++|..||.+|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+|+..+..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ-NPLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 45677999999999999999 7999999999999999 9999999999999999999987643
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.70 E-value=1.2e-17 Score=128.92 Aligned_cols=62 Identities=27% Similarity=0.369 Sum_probs=57.8
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhh
Q 022516 104 ARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (296)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F---~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (296)
||.|+.|+..|+.+||.+| .. ++||+..++.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~-~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTT-SCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 77 7999999999999999 9999999999999999999987654
No 52
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=124.59 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhh
Q 022516 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (296)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (296)
..++.|+.|+.+|+.+||..|.. ++||+..++.+||..| +|++.+|+|||||||+|+||.+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLK-NQFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCcC
Confidence 34678999999999999999999 7999999999999999 999999999999999999987653
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=2.3e-17 Score=123.40 Aligned_cols=62 Identities=27% Similarity=0.369 Sum_probs=58.0
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhh
Q 022516 104 ARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (296)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F---~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (296)
||.|+.|+..|+.+||.+| .. ++||+..++.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~-~~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcc-CCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcccccccc
Confidence 6789999999999999999 77 7999999999999999 9999999999999999999976643
No 54
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=126.26 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhh
Q 022516 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (296)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (296)
..+.|+.||.+|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||....
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCR-NQFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH-SSSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCccCCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhccc
Confidence 3556899999999999999999 7999999999999999 999999999999999999997654
No 55
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.69 E-value=7.2e-18 Score=129.00 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQG----TGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~----n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
...+.+|.||.||.+|+.+|| .|... ++||+..+|.+||..| +|++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 345678899999999999999 78871 3999999999999999 99999999999999999875
No 56
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=131.53 Aligned_cols=66 Identities=27% Similarity=0.386 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhh
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (296)
+....+|.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||.+..
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVR-TQWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhccc
Confidence 34456788999999999999999999 7999999999999999 999999999999999999997643
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.69 E-value=6.6e-17 Score=124.20 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhhcc
Q 022516 101 KISARQRWTPTPVQLQILESIFDQG--TGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSS 172 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~--n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~~ 172 (296)
.+.+++|+.|+.+|+.+||.+|... ++||+..+|.+||..| +|++.||+|||||||+|+|+.......
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~~~~~~ 74 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDMLQQRR 74 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHHTCCCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHHHHhcc
Confidence 3457789999999999999999871 4999999999999999 999999999999999999997665433
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.4e-17 Score=125.90 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhhc
Q 022516 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (296)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~ 171 (296)
..||.+||.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+|+......
T Consensus 18 k~~t~~Ql~~Le~~F~~-~~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLK-SSFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred ccCCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 34899999999999999 8999999999999999 99999999999999999998776543
No 59
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=6.6e-17 Score=120.86 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhh
Q 022516 101 KISARQRWTPTPVQLQILESIFDQ--GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~--~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (296)
.+.++.|+.|+..|+.+||.+|.. .++||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccccc
Confidence 456788999999999999999974 26999999999999999 999999999999999999997653
No 60
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=2.5e-17 Score=120.08 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=54.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 103 SARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 103 ~rR~Rt~ft~~Ql~~LE~~F---~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
.++.|+.|+..|+.+||.+| .. ++||+..++.+||..| ||++.+|+|||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~-~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLS-NPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999 77 7999999999999999 99999999999999999876
No 61
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.65 E-value=2.5e-17 Score=130.87 Aligned_cols=71 Identities=28% Similarity=0.474 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhc--------------CC---cccchhhchhhhhHH
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQH--------------GQ---ISETNVYNWFQNRRA 161 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~--------------~g---Ls~~qV~vWFQNRRa 161 (296)
..++.||.|+.|++.|+.+||..|.. ++||+..+|++||..|+.. .| |++.+|+|||||||+
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~-~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYER-QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 34567889999999999999999999 8999999999999993210 18 999999999999999
Q ss_pred HHHHHhhhh
Q 022516 162 RSKRKQLVS 170 (296)
Q Consensus 162 K~Kr~~~~~ 170 (296)
++|++++..
T Consensus 84 k~k~k~~~~ 92 (99)
T 1lfb_A 84 EEAFRHKLA 92 (99)
T ss_dssp TTSCCC---
T ss_pred HHHHhchhh
Confidence 998876543
No 62
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.64 E-value=2e-16 Score=113.79 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHH
Q 022516 106 QRWTPTPVQLQILESIFDQG--TGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (296)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~--n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~ 166 (296)
+|+.|+.+|+.+||.+|... ++||+..++.+||..+ ||++.+|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHcccccC
Confidence 36889999999999999982 4999999999999999 999999999999999999874
No 63
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=6.6e-17 Score=121.16 Aligned_cols=59 Identities=22% Similarity=0.394 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHh
Q 022516 104 ARQRWTPTPVQLQILESIF-DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (296)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F-~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (296)
.+.|..++.+|+.+||..| .. ++||+..+|.+||..| +|++++|+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~-~~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV-TKYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT-CSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCCC
Confidence 3455667889999999999 88 8999999999999999 9999999999999999999743
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=2.7e-16 Score=116.16 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHH
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~ 163 (296)
+.+..+|.||.|+.+||.+|+.+|+.-++||+.+.|..||.+| ||++++|+|||||||.-.
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHhhccceeee
Confidence 4456789999999999999999999933999999999999999 999999999999999754
No 65
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.63 E-value=2.9e-17 Score=145.04 Aligned_cols=139 Identities=20% Similarity=0.256 Sum_probs=86.2
Q ss_pred HHHHHhhhhhhhccCCCCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-----hhhcCCCC
Q 022516 11 QQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQD-----LAAAGGRL 85 (296)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~l~~lr~qi~~~~~ic~~~~~~~k~l~~~~~-----~~~sg~~~ 85 (296)
..++...+-.+++.|++|.++.-..| +|+..|+++..........+. ..+..|....+. +...+ .
T Consensus 29 ~~l~~~Ik~~l~~~gitQ~~lA~~~G------iSqs~ISr~l~~~~~~~~~kr--aaly~W~~~~~~~i~~~~~~~~--~ 98 (194)
T 1ic8_A 29 WRVAKMVKSYLQQHNIPQREVVDTTG------LNQSHLSQHLNKGTPMKTQKR--AALYTWYVRKQREVAQQFTHAG--Q 98 (194)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHC------CCHHHHHHHHHSBCCCCHHHH--HHHHHHHHHHTTTTHHHHCCC----
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhC------CChHHHHHHHhcCcccccccc--ccchhhHHHhhhhhhccccCCC--C
Confidence 34555667778899999999876653 788888888543222122211 112223221111 11000 0
Q ss_pred CCcccCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCC-------------------
Q 022516 86 GNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ------------------- 146 (296)
Q Consensus 86 g~~~~~p~~~s~~~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~g------------------- 146 (296)
+.. ..+........++.||.|+.|++.|+.+||..|.. ++||+..+|++||..| +
T Consensus 99 ~~~-~~~~~~~~~~~~k~rr~R~~ft~~ql~~Le~~F~~-~~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~ 172 (194)
T 1ic8_A 99 GGL-IEEPTGDELPTKKGRRNRFKWGPASQQILFQAYER-QKNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGS 172 (194)
T ss_dssp -------------------CCCCCCCHHHHHHHHHHHHH-HCCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGG
T ss_pred CCC-CCCCcccccccccCCCCCcccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHh----Cchhhccccccccccccccc
Confidence 000 11111111245677899999999999999999999 8999999999999999 7
Q ss_pred --cccchhhchhhhhHHHHHH
Q 022516 147 --ISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 147 --Ls~~qV~vWFQNRRaK~Kr 165 (296)
|++.+|+|||||||+|+|.
T Consensus 173 ~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 173 NLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp GCCCHHHHHHHHHHHHHHCC-
T ss_pred cccCccccchhchhhhhhhhc
Confidence 9999999999999999765
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.63 E-value=2.4e-16 Score=116.03 Aligned_cols=52 Identities=21% Similarity=0.398 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHh
Q 022516 111 TPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (296)
Q Consensus 111 t~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (296)
+.+|+.+||..|.. ++||+..+|.+||..| ||++++|++||||||+|+|+.+
T Consensus 12 ~~~Ql~~LE~~F~~-~~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQ-SQFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHG-GGSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 68999999999999 7999999999999999 9999999999999999999864
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-16 Score=118.75 Aligned_cols=57 Identities=35% Similarity=0.451 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhh
Q 022516 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (296)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (296)
...+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||....
T Consensus 9 ~~~t~~ql~~LE~~F~~-~~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSH-QKYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhhh
Confidence 46799999999999999 7999999999999999 999999999999999999987654
No 68
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.61 E-value=5.3e-16 Score=119.86 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=54.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHH
Q 022516 102 ISARQRWTPTPVQLQILESIFDQ---GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (296)
Q Consensus 102 ~~rR~Rt~ft~~Ql~~LE~~F~~---~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (296)
..+++|+.|+.+|+.+||.+|.. + +||+..+|.+||..| ||++++|+|||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcc
Confidence 34567899999999999999998 5 999999999999999 9999999999999999987
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.6e-16 Score=115.41 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
+..++..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL-NAQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhc-CCCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 345679999999999999 8999999999999999 99999999999999998765
No 70
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.59 E-value=8.3e-16 Score=117.91 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=54.4
Q ss_pred CCCCCCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhh
Q 022516 105 RQRWTPTPVQLQILESIFDQ--GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (296)
Q Consensus 105 R~Rt~ft~~Ql~~LE~~F~~--~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (296)
++|+.|+..|+.+||.+|.. .++||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHH----CCCHHHcccccHHHHccccccccC
Confidence 45666999999999999997 24999999999999999 999999999999999999986543
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=3.7e-16 Score=114.69 Aligned_cols=51 Identities=24% Similarity=0.493 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHH
Q 022516 112 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (296)
Q Consensus 112 ~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~ 166 (296)
+.|+.+||..|...++||+..+|.+||..| +|+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCCC
Confidence 468999999994327999999999999999 999999999999999999863
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.55 E-value=1.4e-15 Score=130.29 Aligned_cols=64 Identities=33% Similarity=0.400 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 100 ~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
..+.||.|+.|+..|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKE-NKRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccCC
Confidence 3456889999999999999999999 8999999999999999 99999999999999999887533
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=6.6e-15 Score=108.65 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhh
Q 022516 109 TPTPVQLQILESIFD---QGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~---~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~ 169 (296)
.|+.+|+.+|+.+|. . ++||+..++.+||..+ ||++.||++||||||+|+|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~-~pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLT-HPYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTT-SCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHHHH
Confidence 689999999999999 8 8999999999999999 999999999999999999986554
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.39 E-value=1.9e-13 Score=122.41 Aligned_cols=64 Identities=34% Similarity=0.595 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhh-------------c----CCcccchhhchhhhhHH
Q 022516 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQ-------------H----GQISETNVYNWFQNRRA 161 (296)
Q Consensus 99 ~~~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~-------------~----~gLs~~qV~vWFQNRRa 161 (296)
..++.||.|+.|++.|+.+||.+|.. ++||+..+|++||..|.. | ..|++.+|+|||||||+
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~-~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDR-QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 56778899999999999999999999 899999999999999931 0 12899999999999998
Q ss_pred HH
Q 022516 162 RS 163 (296)
Q Consensus 162 K~ 163 (296)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 63
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.3e-13 Score=100.16 Aligned_cols=46 Identities=15% Similarity=0.474 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHH
Q 022516 112 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162 (296)
Q Consensus 112 ~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK 162 (296)
.+|+.+||.+|.. |++|+.+++..||..+ ||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~-n~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM-NMEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH-CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 5899999999999 8999999999999999 99999999999999984
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.34 E-value=2.1e-12 Score=100.39 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhhcc
Q 022516 108 WTPTPVQLQILESIFDQ--GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSS 172 (296)
Q Consensus 108 t~ft~~Ql~~LE~~F~~--~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~~~ 172 (296)
..|+.+++.+|+.+|.. .++||+..+|.+||..+ ||+++||++||+|||+|+++.......
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~~~~~~ 72 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDMLRKDG 72 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHHHHhcC
Confidence 46899999999999976 25999999999999999 999999999999999999988765433
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.18 E-value=5.3e-12 Score=119.76 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHH
Q 022516 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (296)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (296)
++.|+.++..|+..||+.|.. ++||+..+|.+||..| +|+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~-~~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRR-KQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHH-CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhc-CCCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 456788999999999999999 8999999999999999 9999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.73 E-value=2.5e-09 Score=69.88 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.2
Q ss_pred chhhchhhhhHHHHHHHhhhhcc
Q 022516 150 TNVYNWFQNRRARSKRKQLVSSS 172 (296)
Q Consensus 150 ~qV~vWFQNRRaK~Kr~~~~~~~ 172 (296)
+||+|||||||+||||+......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 58999999999999999887544
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.00 E-value=0.039 Score=40.56 Aligned_cols=38 Identities=21% Similarity=0.450 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhh
Q 022516 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (296)
Q Consensus 115 l~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (296)
..+|+.+|.. .+.+...+...|+.+. +|+..+|+.||-
T Consensus 18 ~e~L~~Yy~~-hk~L~EeDl~~L~~ks----kms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAA-HQQLRETDIPQLSQAS----RLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHH-TCCCCTTHHHHHHHHT----TCCHHHHHHHHH
T ss_pred chHHHHHHHH-hcccchhhHHHHHHHh----CCCHHHHHHHHH
Confidence 4689999999 7999999999999999 999999999995
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=71.18 E-value=7.4 Score=30.14 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHH
Q 022516 106 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (296)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (296)
+|..+|.++...+-..+.. +..... .+||..+ |++...|..|..+++....
T Consensus 4 ~r~~~t~e~K~~iv~~~~~-~g~~~~---~~~A~~~----gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEE-NPDLRK---GEIARRF----NIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHH-CTTSCH---HHHHHHH----TCCHHHHHHHHHTHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHH-CCCCcH---HHHHHHh----CCCHHHHHHHHhchhhhcc
Confidence 5678999998888777755 444443 3688999 9999999999987766543
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=69.32 E-value=7.9 Score=26.13 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhh
Q 022516 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 158 (296)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQN 158 (296)
|..|+++....+..++.. .........++|..+ ||+...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~--g~s~~~~~~~vA~~~----gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN--DNDCKGNQRATARKY----NIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH--CTTTTTCHHHHHHHT----TSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc--CCCcchHHHHHHHHH----CcCHHHHHHHHHH
Confidence 456888887777555554 233122255899999 9999999999754
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=68.36 E-value=6.8 Score=28.77 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 110 ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
+++.+..+|.-.|... + ...+||..| |++...|+.+...-|.|.|+.-.
T Consensus 38 L~~~~r~vl~l~~~~g--~----s~~eIA~~l----gis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG--W----STAQIATDL----GIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp SCHHHHHHHHHHHTSC--C----CHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHHHHH
Confidence 5677888887766552 2 234899999 99999999999877777776544
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=63.91 E-value=8.3 Score=28.21 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhh
Q 022516 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (296)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (296)
++.+..++.++....-..+.. .. + ..+||..+ ||+...|+.|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~--g~-s---~~~iA~~~----gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD--GE-S---KASVARDI----GVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH--TC-C---HHHHHHHH----TCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC--CC-C---HHHHHHHH----CcCHHHHHHHHH
Confidence 345667888886555556654 22 2 44889999 999999999974
No 84
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=61.59 E-value=6.6 Score=31.18 Aligned_cols=37 Identities=16% Similarity=0.399 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhh
Q 022516 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (296)
Q Consensus 115 l~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (296)
+.+++-+|+. |+||... |--... .|||.+||.++.+-
T Consensus 15 vRiIkiLyQS-NPyP~pe-------------GTRqaR-----RNRRRRWR~RQrQI 51 (115)
T 2x7l_M 15 VRLIKFLYQS-NPPPNPE-------------GTRQAR-----RNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHHS-SCCCCCC-------------CCTTTH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-CCCCCCC-------------Cchhhh-----HhHHHHHHHHHHHH
Confidence 3455556777 8999873 321111 69999999988763
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=59.44 E-value=9.2 Score=25.93 Aligned_cols=47 Identities=11% Similarity=-0.083 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
.+++.+..+|.-.|.. .+. ..+||..+ |++...|+.+...-+.+.|+
T Consensus 15 ~L~~~~r~il~l~~~~--g~s----~~eIA~~l----gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL--GLS----YADAAAVC----GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTS--CCC----HHHHHHHH----TSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHc--CCC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3678888899887655 222 34889999 99999999988766655554
No 86
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=52.23 E-value=6.7 Score=24.70 Aligned_cols=43 Identities=9% Similarity=0.334 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHH
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRa 161 (296)
.++.+++..+...+.. . .+ ..+||..+ |++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~--g-~s---~~~ia~~l----gvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEK--G-HP---RQQLAIIF----GIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHT--T-CC---HHHHHHTT----SCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHc--C-CC---HHHHHHHH----CCCHHHHHHHHHHccc
Confidence 3556666666556654 2 22 35788899 9999999999975443
No 87
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=51.71 E-value=16 Score=28.37 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
.+++.+..+|. .|.. .+ ...+||..| |++...|+.+...-|.+.|+.-.
T Consensus 109 ~L~~~~r~v~~-~~~~--g~----s~~EIA~~l----gis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR--GY----SYREIATIL----SKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHTT--TC----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc--CC----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777 4444 23 234889999 99999999999877777666544
No 88
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=51.60 E-value=10 Score=27.64 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhhhh
Q 022516 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (296)
Q Consensus 115 l~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~~~ 170 (296)
+.+++-+|+. |+||+.+-- . .. =.|||.+||.++.+-
T Consensus 18 vRiIkiLyQS-NP~P~p~GT-r--qa---------------RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQS-NPPPNPEGT-R--QA---------------RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHT-CCCCCCCSC-H--HH---------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-CCCCCCCCc-h--HH---------------HHHHHHHHHHHHHHH
Confidence 3455666877 899986411 0 11 158999999887753
No 89
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=51.23 E-value=18 Score=22.03 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhh
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 158 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQN 158 (296)
.++.++...+...+.. .+ + ..+||..| +++...|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~--g~-s---~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL--NV-S---LHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT--TC-C---HHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc--CC-C---HHHHHHHH----CcCHHHHHHHHhh
Confidence 4677776555555654 23 2 45889999 9999999999853
No 90
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=50.90 E-value=20 Score=27.73 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHh
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (296)
.+++.+..++.-.|..+ +. ..++|..+ |++...|+.|...-|.+.|+.-
T Consensus 22 ~L~~~~r~vl~l~y~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD--YS----LAEIADEF----GVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC--CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHHH
Confidence 36788888888876662 32 34889999 9999999999987777766643
No 91
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=49.71 E-value=25 Score=26.57 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHH
Q 022516 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163 (296)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~ 163 (296)
...+++.++.+|.-++.- +. ..+||..| ++++..|+.+..+-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G---~s----~~EIA~~L----~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG---FL----VTEIAKKL----NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT---CC----HHHHHHHH----TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcC---CC----HHHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 356899999999876543 22 25899999 999999998887554443
No 92
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=48.94 E-value=0.28 Score=40.93 Aligned_cols=30 Identities=0% Similarity=-0.172 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCH
Q 022516 101 KISARQRWTPTPVQLQILESIFDQGTGTPSK 131 (296)
Q Consensus 101 ~~~rR~Rt~ft~~Ql~~LE~~F~~~n~yPs~ 131 (296)
.+.+|+|+.|+..|+.+|+..|+. ++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~-~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQA-NPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCC-CCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhC-CCCccc
Confidence 456789999999999999999999 799875
No 93
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=48.92 E-value=16 Score=26.42 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCcccchhhchhh
Q 022516 108 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (296)
Q Consensus 108 t~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (296)
|.++.+++..++..|.. .+.+.+..+...+...+ +++...|..+|.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~~ 50 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS----KLPILELSHIWE 50 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH----SSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 57889999999999976 24677888877777777 888777666553
No 94
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=45.47 E-value=27 Score=24.19 Aligned_cols=46 Identities=7% Similarity=0.071 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHH
Q 022516 109 TPTPVQLQILESIFD----QGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~----~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (296)
.+++.+..+|...|. . .+ .-.+||..| |++...|+.|...-+.|.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~--~~----s~~eIA~~l----~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGR--EH----TLEEVGAYF----GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSS--CC----CHHHHHHHH----TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCC--CC----CHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 468889999988885 3 11 234899999 9999999998876666655
No 95
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=43.95 E-value=24 Score=27.15 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHhh
Q 022516 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (296)
Q Consensus 110 ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~~ 168 (296)
+++.+..+|.-.|..+ +. ..++|..| |++...|+.+...-|.+.|+.-.
T Consensus 26 L~~~~r~vl~l~~~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED--YS----LSEIADTF----NVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp SCHHHHHHHHHHHTSC--CC----HHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888776552 32 34889999 99999999999877777766543
No 96
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=43.36 E-value=46 Score=24.65 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCC--cccchhhchhh
Q 022516 106 QRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQ--ISETNVYNWFQ 157 (296)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~g--Ls~~qV~vWFQ 157 (296)
....++.+++..|..+|.. .+.+.+..+...+...+ | ++...|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~l----g~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSL----GYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHH----TCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh----CCCCCHHHHHHHHH
Confidence 4457899999999999976 35789999988888887 6 56677777774
No 97
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=42.71 E-value=24 Score=26.11 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHH
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~ 166 (296)
.+++.++.+|.-++.- +. ..+||..| +++...|+.+..+-+.|.+..
T Consensus 27 ~Lt~~e~~vl~l~~~g---~s----~~eIA~~l----~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGLLSEG---LT----NKQIADRM----FLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHHHHTT---CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHcC---CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHcCC
Confidence 5889999999886433 22 24899999 999999998887666555443
No 98
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=42.40 E-value=20 Score=26.24 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHhhcCCcccchhhchhh
Q 022516 107 RWTPTPVQLQILESIFDQGT-GTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (296)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~n-~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (296)
|..|+.++....-..+.. . .. ...+||..+ ||+...|+.|..
T Consensus 3 r~~ys~e~k~~~v~~~~~-~~g~----s~~~ia~~~----gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYEN-SDGA----SLQQIANDL----GINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTT-GGGS----CHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-cCCC----hHHHHHHHH----CcCHHHHHHHHH
Confidence 346888877665555533 1 22 245889999 999999999964
No 99
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=41.13 E-value=19 Score=26.30 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCcccchhhchhh
Q 022516 108 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (296)
Q Consensus 108 t~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (296)
|.++.+++..|+..|.. .+.+.+..+...+...+ +++...|..+|.
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~~ 51 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT----GLPSTLLAHIWS 51 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTT----TCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 45788899999999965 24678888777777666 888777766663
No 100
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=39.32 E-value=30 Score=27.86 Aligned_cols=48 Identities=13% Similarity=-0.026 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHh
Q 022516 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (296)
Q Consensus 110 ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (296)
+++.+..+|.-.|.. .+ ...+||..| |+++..|+.+...-|.+.|+.-
T Consensus 141 L~~~~r~vl~l~~~~--g~----s~~EIA~~l----gis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELD--GL----SYEEIAAIM----DCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTT--CC----CHHHHHHHT----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHc--CC----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
Confidence 345555555554443 12 234889999 9999999999987777776643
No 101
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=37.18 E-value=31 Score=23.39 Aligned_cols=47 Identities=30% Similarity=0.282 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHH
Q 022516 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (296)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (296)
-..+++.+..+|..++ . .+ ...+||..+ |++...|+.+...-+.|.+
T Consensus 9 ~~~L~~~e~~il~~~~-~--g~----s~~eIA~~l----~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLV-Q--DK----TTKEIASEL----FISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHT-T--TC----CHHHHHHHH----TSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH-c--CC----CHHHHHHHH----CCCHHHHHHHHHHHHHHHC
Confidence 3468899999998843 2 33 234899999 9999999988876555443
No 102
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=36.49 E-value=29 Score=25.15 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHH
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (296)
.+++.++.+|.-++. .+... +||..| +++...|+.+..+-+.|.+
T Consensus 29 ~Lt~~e~~vl~l~~~---g~s~~----eIA~~l----~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLLIAK---GYSNQ----EIASAS----HITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHHHHT---TCCTT----HHHHHH----TCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHc---CCCHH----HHHHHH----CcCHHHHHHHHHHHHHHHC
Confidence 578889999987543 23333 889999 9999999988875555543
No 103
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=35.88 E-value=36 Score=28.21 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHh
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (296)
.+++.+..+|.-.|.. .+. ..+||..| |++...|+.+...-|.+.|+.-
T Consensus 187 ~L~~~~r~vl~l~~~~--g~s----~~EIA~~l----gis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE--ELP----AKEVAKIL----ETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTS--CCC----HHHHHHHT----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc--CCC----HHHHHHHh----CCCHHHHHHHHHHHHHHHHHHH
Confidence 3567778888777655 222 34889999 9999999999987777776643
No 104
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=34.99 E-value=29 Score=25.08 Aligned_cols=51 Identities=10% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
.+++.+..+|...|..... ......+||..| |++...|+.+...-+.|.|.
T Consensus 18 ~L~~~er~vl~l~~~l~~~--~~~s~~EIA~~l----gis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG--KPKTLEEVGQYF----NVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS--SCCCHHHHHHHH----TCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHH
Confidence 4678888888888751000 001234889999 99999999988655555443
No 105
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.78 E-value=25 Score=23.96 Aligned_cols=50 Identities=8% Similarity=0.137 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHH
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (296)
.+++.+..+|.-.|.. ..+ ....-.+||..+ |++...|+.+...-+.|.|
T Consensus 5 ~L~~~er~il~l~~~l-~~~-~g~s~~eIA~~l----gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGI-DMN-TDYTLEEVGKQF----DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTT-TSS-SCCCHHHHHHHH----TCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHcc-CCC-CCCCHHHHHHHH----CcCHHHHHHHHHHHHHHHH
Confidence 4678889999888721 000 011235899999 9999999988765444443
No 106
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=34.57 E-value=65 Score=25.33 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=32.2
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCcccc
Q 022516 105 RQRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISET 150 (296)
Q Consensus 105 R~Rt~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~gLs~~ 150 (296)
++|..+|.+|+..|..+|.. .+.+.+..+...+...| |+...
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~l----g~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL----GRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHT----TSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHc----CCCcc
Confidence 34567999999999999976 34788988888877777 76554
No 107
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=32.19 E-value=35 Score=24.37 Aligned_cols=46 Identities=30% Similarity=0.273 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHH
Q 022516 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (296)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (296)
..+++.+..+|.-++ . .+ ...+||..| +++...|+.+..+-+.|.+
T Consensus 20 ~~Lt~~e~~vl~l~~-~--g~----s~~eIA~~l----~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLIA-Q--GL----PNKMIARRL----DITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHHT-T--TC----CHHHHHHHH----TSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHH-c--CC----CHHHHHHHH----CcCHHHHHHHHHHHHHHHc
Confidence 458899999998843 3 22 234899999 9999999988875555543
No 108
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=30.89 E-value=9 Score=33.93 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHH
Q 022516 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162 (296)
Q Consensus 115 l~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK 162 (296)
+......|.. ..|- .....+||+.. |++...|+.+|.++-.=
T Consensus 126 l~aa~~l~~~-~G~~-~~T~~~IA~~A----Gvs~gtlY~yF~sKe~L 167 (311)
T 4ich_A 126 LETAWRLIAR-RGYH-NVRIHDIASEL----GTSNATIHYHFPSKKDI 167 (311)
T ss_dssp HHHHHHHHHH-HCGG-GCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHH-cCCc-cCCHHHHHHHh----CCCchhHHHhCCCHHHH
Confidence 3344455666 4553 33456889999 99999999999998653
No 109
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=30.30 E-value=24 Score=28.64 Aligned_cols=48 Identities=13% Similarity=0.251 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHHHh
Q 022516 114 QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (296)
Q Consensus 114 Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr~~ 167 (296)
-+......|.. ..|- .....+||+.. |++...|+..|.++-.=..-..
T Consensus 33 Il~aa~~lf~~-~G~~-~~tv~~IA~~a----gvs~~t~Y~~F~sK~~Ll~~~~ 80 (215)
T 2qko_A 33 LVNAAIEVLAR-EGAR-GLTFRAVDVEA----NVPKGTASNYFPSRDDLFDQVG 80 (215)
T ss_dssp HHHHHHHHHHH-TCTT-TCCHHHHHHHS----SSTTTCHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHH-hChh-hccHHHHHHHc----CCCcchHHHhCCCHHHHHHHHH
Confidence 34555566877 5654 34566889999 9999999999999876554433
No 110
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=29.92 E-value=20 Score=28.78 Aligned_cols=23 Identities=4% Similarity=0.034 Sum_probs=17.8
Q ss_pred cCCcccchhhchhhhhHHHHHHH
Q 022516 144 HGQISETNVYNWFQNRRARSKRK 166 (296)
Q Consensus 144 ~~gLs~~qV~vWFQNRRaK~Kr~ 166 (296)
..|+++..|+.+...-|.+.|+.
T Consensus 160 ~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 160 ETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHH
Confidence 34999999999998777776653
No 111
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=29.22 E-value=20 Score=28.65 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHH
Q 022516 113 VQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162 (296)
Q Consensus 113 ~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK 162 (296)
.-+..-...|.. ..| . ....+||+.. |++...|+..|.||-.=
T Consensus 19 ~Il~aA~~lf~~-~G~-~-~s~~~IA~~a----gvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 19 KILAAAVRVFSE-EGL-D-AHLERIAREA----GVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHH-HCT-T-CCHHHHHHHT----TCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHh-cCc-C-CCHHHHHHHh----CCChHHHHHHcCCHHHH
Confidence 445566667888 577 5 6788999999 99999999999998543
No 112
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.94 E-value=29 Score=24.00 Aligned_cols=44 Identities=30% Similarity=0.321 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHH
Q 022516 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (296)
Q Consensus 110 ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~K 164 (296)
+++.+..+|.-++ . .+. ..+||..| +++...|+.+...-+.|.+
T Consensus 17 L~~~e~~vl~l~~-~--g~s----~~eIA~~l----~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAVV-A--GLP----NKSIAYDL----DISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHHT-T--TCC----HHHHHHHT----TSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH-c--CCC----HHHHHHHH----CcCHHHHHHHHHHHHHHHc
Confidence 5677888887743 2 232 24889999 9999999988875555544
No 113
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=28.79 E-value=44 Score=27.48 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHH
Q 022516 113 VQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162 (296)
Q Consensus 113 ~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK 162 (296)
.-+......|.. ..|-. ....+||+.. |++...|+..|.++-.=
T Consensus 34 ~Il~aA~~lf~~-~G~~~-~t~~~IA~~A----gvs~~t~Y~~F~sKe~L 77 (230)
T 2iai_A 34 TLLSVAVQVFIE-RGYDG-TSMEHLSKAA----GISKSSIYHHVTGKEEL 77 (230)
T ss_dssp CHHHHHHHHHHH-HCTTT-CCHHHHHHHH----TSCHHHHTTTCSSHHHH
T ss_pred HHHHHHHHHHHH-cCccc-cCHHHHHHHH----CCChhHHHHhCCCHHHH
Confidence 456667777877 46643 3456899999 99999999999998643
No 114
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=28.50 E-value=43 Score=26.69 Aligned_cols=43 Identities=12% Similarity=0.425 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHH
Q 022516 113 VQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (296)
Q Consensus 113 ~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRa 161 (296)
.-+......|.. ..|- .....+||+.. |++...|+.+|.+|-.
T Consensus 35 ~Il~aa~~l~~~-~G~~-~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 35 QIIKVATELFRE-KGYY-ATSLDDIADRI----GFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHHH-TCTT-TCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHH-cCcc-cCcHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 344555566777 5654 33466899999 9999999999999865
No 115
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=26.77 E-value=1.2e+02 Score=23.90 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=34.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHH-HHhhcCCcccchhhchhhh
Q 022516 104 ARQRWTPTPVQLQILESIF-DQGTGTPSKQKIKEITV-ELSQHGQISETNVYNWFQN 158 (296)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F-~~~n~yPs~~~r~~LA~-~L~~~~gLs~~qV~vWFQN 158 (296)
+++|..+|.+|...|-.++ +. ++-.+..+...-|. .... +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~-~~~~~q~~la~wa~~~f~~--~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL-QNRSGQQDLIEWFREKFGK--DISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS-SSCCCHHHHHHHHHHHHSS--CCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHCC--CCcHHHHHHHHhh
Confidence 5678899999999999999 55 55555443322221 3300 5788889999865
No 116
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.38 E-value=61 Score=21.12 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 114 QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 114 Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
+..+|.- +.. .+.. .++|..| ++++..|+.+..+-+.|.+.
T Consensus 3 e~~vl~l-~~~--g~s~----~eIA~~l----~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 3 ERQVLKL-IDE--GYTN----HGISEKL----HISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHH-HHT--SCCS----HHHHHHT----CSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH-HHc--CCCH----HHHHHHh----CCCHHHHHHHHHHHHHHHCC
Confidence 5566665 333 2333 3899999 99999999888765555443
No 117
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=25.44 E-value=78 Score=23.16 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=32.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHH
Q 022516 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (296)
Q Consensus 105 R~Rt~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRa 161 (296)
.....+++.++.+|.-++.- + ...+||..| ++++..|+....+=+.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G---~----s~~eIA~~L----~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKG---F----TNQEIADAL----HLSKRSIEYSLTSIFN 70 (90)
T ss_dssp ----CCCHHHHHHHHHHHTT---C----CHHHHHHHH----TCCHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHcC---C----CHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence 34567999999999887732 2 234899999 9999999877654433
No 118
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=25.29 E-value=36 Score=24.13 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCcccchhhchhh
Q 022516 108 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (296)
Q Consensus 108 t~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (296)
..++.+++..|..+|.. .+.+.+..+...+...+ |++...|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~----g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTEL----RVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHT----TCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHc----CcCHHHHHHHHH
Confidence 45788999999999875 24678888887777777 888877777764
No 119
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.19 E-value=44 Score=26.97 Aligned_cols=48 Identities=25% Similarity=0.378 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 112 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 112 ~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
..-+..-...|.. ..|-. ....+||+.. |++..-|+..|.|+-.=..-
T Consensus 14 ~~Il~aA~~lF~~-~Gy~~-ts~~~IA~~a----Gvsk~tlY~~F~sKe~L~~a 61 (202)
T 2i10_A 14 QVALQTAMELFWR-QGYEG-TSITDLTKAL----GINPPSLYAAFGSKRDLFEK 61 (202)
T ss_dssp HHHHHHHHHHHHH-HTTTT-CCHHHHHHHH----TCCHHHHHHHHCSHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCccc-CCHHHHHHHh----CCChHHHHHHhCCHHHHHHH
Confidence 3455555667887 56643 3466899999 99999999999998665543
No 120
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=24.50 E-value=39 Score=28.88 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=34.3
Q ss_pred CCCCCCCHH-HHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHH
Q 022516 105 RQRWTPTPV-QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163 (296)
Q Consensus 105 R~Rt~ft~~-Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~ 163 (296)
++|...+.+ -+..-...|.. ..|-. ....+||+.+ |++..-|+..|.||-.=.
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~-~G~~~-~s~~~IA~~a----Gvs~~tlY~hF~~K~~Ll 77 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLA-GDAET-FSVRKLAASL----GTDSSSLYRHFRNKTELL 77 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSS-SSCCC-CCHHHHHHHT----TSCHHHHHHHTSSHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHh-cCccc-CCHHHHHHHh----CcCHHHHHHHcCCHHHHH
Confidence 334445554 34455566776 45543 3455899999 999999999999986543
No 121
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=24.13 E-value=96 Score=22.80 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHhhcC-CCCC-HHHHHHHHHHHhhcCCcccchhhchhh
Q 022516 107 RWTPTPVQLQILESIFDQGT-GTPS-KQKIKEITVELSQHGQISETNVYNWFQ 157 (296)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~n-~yPs-~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (296)
+..|+.++....-..+.... .+++ .....++|..+ ||+...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~----gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKI----GCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHH----CcCHHHHHHHHH
Confidence 34688887765544443211 1222 13567899999 999999999963
No 122
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=23.93 E-value=1.1e+02 Score=20.73 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCc--ccch---hhchh
Q 022516 108 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQI--SETN---VYNWF 156 (296)
Q Consensus 108 t~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~gL--s~~q---V~vWF 156 (296)
..++++++..|...|.. .+.+.+..+...+...+ |. +... |..+|
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~----g~~~~~~~~~~~~~~~ 59 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKL----GQTYTKRETEAIMKEA 59 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHT----SCCCSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH----cCCCCHHHHHHHHHHH
Confidence 45788899999999865 24688888888777777 64 4444 55555
No 123
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=23.07 E-value=86 Score=23.71 Aligned_cols=41 Identities=7% Similarity=0.112 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhh
Q 022516 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 158 (296)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQN 158 (296)
..++.++...+...+.. .+. ..+||..| |++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~--G~s----~~~ia~~l----gis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL--NVS----LHEMSRKI----SRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHT--TCC----HHHHHHHH----TCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHc--CCC----HHHHHHHH----CcCHHHHHHHHHc
Confidence 45788887777777755 232 35889999 9999999999964
No 124
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.84 E-value=60 Score=25.86 Aligned_cols=44 Identities=18% Similarity=0.425 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHH
Q 022516 113 VQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162 (296)
Q Consensus 113 ~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK 162 (296)
.-+......|.. ..|-.. ...+||+.. |++...|+..|.++-.=
T Consensus 18 ~Il~aA~~lf~~-~G~~~~-s~~~Ia~~a----gvs~~t~Y~yF~sKe~L 61 (203)
T 3ccy_A 18 TIIERAAAMFAR-QGYSET-SIGDIARAC----ECSKSRLYHYFDSKEAV 61 (203)
T ss_dssp HHHHHHHHHHHH-TCTTTS-CHHHHHHHT----TCCGGGGTTTCSCHHHH
T ss_pred HHHHHHHHHHHH-cCcccC-CHHHHHHHh----CCCcCeeeeeeCCHHHH
Confidence 445556667888 566543 466899999 99999999999998543
No 125
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=21.60 E-value=2.3e+02 Score=20.45 Aligned_cols=45 Identities=16% Similarity=0.051 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCC-------cccchhhchhhh
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ-------ISETNVYNWFQN 158 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~g-------Ls~~qV~vWFQN 158 (296)
.+++++...+..+... ++..+.. +|+..|... | ++...|..|...
T Consensus 75 ~l~~~~~~~i~~~~~~-~~~~s~~---~i~~~l~~~-g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 75 IATPEIENRIEEYKRS-SPGMFSW---EIREKLIRE-GVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp SSCSTHHHHHHHTTTT-CTTCCHH---HHHHHHHHT-SSSCSTTCCCHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHh-CcchHHH---HHHHHHHHc-CCccccCCcCHHHHHHHHHh
Confidence 5677777778777766 4555554 455555433 5 477888888753
No 126
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=21.42 E-value=37 Score=26.76 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHH
Q 022516 114 QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (296)
Q Consensus 114 Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRa 161 (296)
-+......|.. ..|-. ....+||+.. |++...|+..|.++-.
T Consensus 22 Il~aa~~l~~~-~G~~~-~s~~~Ia~~a----gvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 22 LMEIALEVFAR-RGIGR-GGHADIAEIA----QVSVATVFNYFPTRED 63 (206)
T ss_dssp HHHHHHHHHHH-SCCSS-CCHHHHHHHH----TSCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHh-cCccc-ccHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 34444555777 56543 3456899999 9999999999999854
No 127
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=20.97 E-value=39 Score=25.63 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHhhcCCcccchhhchhh
Q 022516 106 QRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (296)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~----~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQ 157 (296)
..+.++.+++..|..+|.. .+.+.+..+...+...+ +++...|..+|.
T Consensus 12 ~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~----gl~~~el~~i~~ 63 (110)
T 1iq3_A 12 EPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKS----KLSIPELSYIWE 63 (110)
T ss_dssp SSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSS----SCSSCCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 4567888899999999876 23567777666655555 788877776663
No 128
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=20.68 E-value=1.3e+02 Score=22.72 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhcCC--cccchhhchhhhhHH
Q 022516 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ--ISETNVYNWFQNRRA 161 (296)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~n~yPs~~~r~~LA~~L~~~~g--Ls~~qV~vWFQNRRa 161 (296)
.+++++...+... .. ++..+. .+|+..| | ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~-~~~~s~---~~i~~~l----g~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-AS-NSCKTA---RDIRNEL----QLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HH-HCCCCH---HHHHHHT----TCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-Hh-CCCCCH---HHHHHHH----CCCccHHHHHHHHHHCCC
Confidence 5788888777776 33 344444 3677787 7 788899999975544
No 129
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=20.64 E-value=1.6e+02 Score=20.80 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=34.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHhhcCCcccchhhchhhhhHHHHHH
Q 022516 104 ARQRWTPTPVQLQILESIFDQ-GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (296)
Q Consensus 104 rR~Rt~ft~~Ql~~LE~~F~~-~n~yPs~~~r~~LA~~L~~~~gLs~~qV~vWFQNRRaK~Kr 165 (296)
+++|..+|++.-...-...+. +-....+..+.++-.. .||+..+|+.=.|.-|.+-||
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v----~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNV----DKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCC----TTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHc
Confidence 456677787655444444333 2112223334333332 378999999999998888765
Done!