BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022517
         (296 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZU1|A Chain A, Solution Structure Of The N-Terminal Zinc Fingers Of The
          Xenopus Laevis Double Stranded Rna Binding Protein Zfa
          Length = 127

 Score = 35.4 bits (80), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 23 INSPLVRYNE--FDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNS 76
          +NS L+R N   F    C+VC  VL S+SQ  AH  SRKH   ++   A   G +S
Sbjct: 19 VNS-LIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDS 73


>pdb|1TY9|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas
           Fluorescens
 pdb|1TY9|B Chain B, X-Ray Crystal Structure Of Phzg From Pseudomonas
           Fluorescens
          Length = 222

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 15/77 (19%)

Query: 149 SGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKS----------KQSVDSE 198
           SGV    +  + ++L  +   LPN  A DA   +P   HP  S           Q++ + 
Sbjct: 106 SGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNA 165

Query: 199 AKQ---IKGAL--PEGF 210
           A+Q   ++G L  PEG+
Sbjct: 166 ARQLAELQGPLPRPEGY 182


>pdb|2R76|A Chain A, Crystal Structure Of The Rare Lipoprotein B (So_1173) From
           Shewanella Oneidensis, Northeast Structural Genomics
           Consortium Target Sor91a
 pdb|2R76|B Chain B, Crystal Structure Of The Rare Lipoprotein B (So_1173) From
           Shewanella Oneidensis, Northeast Structural Genomics
           Consortium Target Sor91a
          Length = 152

 Score = 27.7 bits (60), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 232 DEYKEYEKLIQEDLKQVDDRFEE--EEVSCFSPFSQSLNHSCLGIYMSGRV 280
           DEYKE  +L++E L+  + +  +   +V      + SL  S L +Y +G V
Sbjct: 24  DEYKELTRLVRERLRLNNVKIVDAANDVPVLRLITDSLERSTLSLYPTGNV 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.128    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,856,291
Number of Sequences: 62578
Number of extensions: 298335
Number of successful extensions: 762
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 8
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)