Query 022517
Match_columns 296
No_of_seqs 121 out of 131
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 06:47:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zu1_A DSRBP-ZFA, RNA binding 96.6 0.0012 3.9E-08 54.0 3.4 37 32-68 90-126 (127)
2 1zr9_A Zinc finger protein 593 94.8 0.014 4.8E-07 48.6 2.7 39 31-69 46-84 (124)
3 3eph_A TRNA isopentenyltransfe 94.7 0.013 4.4E-07 57.1 2.6 36 35-70 360-401 (409)
4 1zu1_A DSRBP-ZFA, RNA binding 94.2 0.02 6.7E-07 46.7 2.2 35 35-69 32-66 (127)
5 3cw1_L U1 small nuclear ribonu 85.3 0.47 1.6E-05 36.7 2.5 32 36-67 4-37 (77)
6 4dgw_A PRE-mRNA-splicing facto 74.6 1 3.5E-05 43.8 1.6 39 31-69 288-326 (402)
7 2yrk_A Zinc finger homeobox pr 72.0 2.5 8.7E-05 30.9 2.7 34 35-68 13-46 (55)
8 4f9c_B Protein DBF4 homolog A; 23.9 31 0.001 28.9 1.7 28 34-64 86-113 (144)
9 2djr_A Zinc finger BED domain- 22.6 50 0.0017 25.0 2.4 31 34-66 27-65 (76)
10 1bcp_F Pertussis toxin; ADP-ri 22.0 27 0.00093 27.4 0.9 14 269-282 25-38 (99)
No 1
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=96.62 E-value=0.0012 Score=54.03 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=34.1
Q ss_pred CCCCceeecccccccCcchhHHhhCChHHHHHHHHHh
Q 022517 32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68 (296)
Q Consensus 32 ~~GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK 68 (296)
..+.+.|.+|++.+.++..+..|++||+|+.++.+++
T Consensus 90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~ 126 (127)
T 1zu1_A 90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE 126 (127)
T ss_dssp CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence 5678899999999999999999999999999998764
No 2
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=94.78 E-value=0.014 Score=48.61 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=36.0
Q ss_pred CCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 022517 31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (296)
Q Consensus 31 ~~~GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK~ 69 (296)
+..++..|..|+....+++.+..|.+||.|+.++..|+.
T Consensus 46 tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~ 84 (124)
T 1zr9_A 46 PGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV 84 (124)
T ss_dssp GGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred CCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence 356899999999999999999999999999999999974
No 3
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.71 E-value=0.013 Score=57.06 Aligned_cols=36 Identities=28% Similarity=0.564 Sum_probs=31.6
Q ss_pred Cceeecccc------cccCcchhHHhhCChHHHHHHHHHhhc
Q 022517 35 QPVCRVCDV------VLKSDSQWDAHQASRKHHEAIKNIKAG 70 (296)
Q Consensus 35 qL~C~lCn~------~VKsEslW~aHv~Sk~Hre~v~~lK~~ 70 (296)
+-+|-+|+. .+-.|.-|..|+.|+.||.++.+.++.
T Consensus 360 ~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~ 401 (409)
T 3eph_A 360 HYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ 401 (409)
T ss_dssp EEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred ceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence 458999997 677889999999999999999987764
No 4
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=94.18 E-value=0.02 Score=46.69 Aligned_cols=35 Identities=43% Similarity=0.624 Sum_probs=32.4
Q ss_pred CceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 022517 35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (296)
Q Consensus 35 qL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK~ 69 (296)
.+.|.+|++.+.+++.-..|..|+.|+.+|..+..
T Consensus 32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~ 66 (127)
T 1zu1_A 32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA 66 (127)
T ss_dssp SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence 48999999999999999999999999999987654
No 5
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=85.26 E-value=0.47 Score=36.69 Aligned_cols=32 Identities=38% Similarity=0.623 Sum_probs=27.0
Q ss_pred ceeecccccccCc--chhHHhhCChHHHHHHHHH
Q 022517 36 PVCRVCDVVLKSD--SQWDAHQASRKHHEAIKNI 67 (296)
Q Consensus 36 L~C~lCn~~VKsE--slW~aHv~Sk~Hre~v~~l 67 (296)
--|--|++-|... +.|..|++|++|+.|+...
T Consensus 4 YyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y 37 (77)
T 3cw1_L 4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY 37 (77)
T ss_pred cccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence 4599999999544 5689999999999999874
No 6
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=74.59 E-value=1 Score=43.79 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=34.5
Q ss_pred CCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 022517 31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (296)
Q Consensus 31 ~~~GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK~ 69 (296)
+..+.+-|..|....+++.+...|+.||+|..++++.|.
T Consensus 288 ~~~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~k~ 326 (402)
T 4dgw_A 288 SEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRN 326 (402)
T ss_dssp ETTTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHSHH
T ss_pred CCCcCeeehhhhhhhccccccHHHhcccccchhHHHHHH
Confidence 357789999999999999999999999999998876544
No 7
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=72.03 E-value=2.5 Score=30.93 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=27.7
Q ss_pred CceeecccccccCcchhHHhhCChHHHHHHHHHh
Q 022517 35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68 (296)
Q Consensus 35 qL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK 68 (296)
+.-|.+|++.--+-.--.-|+.|++|-.+|..+-
T Consensus 13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v 46 (55)
T 2yrk_A 13 KPECTLCGVKYSARLSIRDHIFSKQHISKVRETV 46 (55)
T ss_dssp CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTT
T ss_pred CccccccCcccccccchhhhhccHHHHHHHHHHH
Confidence 4799999987665556788999999999887643
No 8
>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*
Probab=23.93 E-value=31 Score=28.87 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCceeecccccccCcchhHHhhCChHHHHHH
Q 022517 34 DQPVCRVCDVVLKSDSQWDAHQASRKHHEAI 64 (296)
Q Consensus 34 GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v 64 (296)
..-.|-+|.+...+ -..|+.|.+|+.-+
T Consensus 86 k~GyCE~C~~~y~~---l~~H~~s~~Hr~fa 113 (144)
T 4f9c_B 86 KKGYCECCLQKYED---LETHLLSEQHRNFA 113 (144)
T ss_dssp --CEETTTTEECSC---HHHHHHSHHHHHHH
T ss_pred CCCCccchhhhhhh---HHHHcCCHHHHHHH
Confidence 34589999888875 67999999999655
No 9
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.56 E-value=50 Score=25.02 Aligned_cols=31 Identities=23% Similarity=0.652 Sum_probs=21.9
Q ss_pred CCceeeccccccc--------CcchhHHhhCChHHHHHHHH
Q 022517 34 DQPVCRVCDVVLK--------SDSQWDAHQASRKHHEAIKN 66 (296)
Q Consensus 34 GqL~C~lCn~~VK--------sEslW~aHv~Sk~Hre~v~~ 66 (296)
..-.|.+|+..|. +=.||. |+. ..|.+.+++
T Consensus 27 ~~A~Ck~C~k~ls~g~~s~~GTS~L~r-HL~-~~H~~e~~~ 65 (76)
T 2djr_A 27 QYATCRLCGRQVSRGPGVNVGTTALWK-HLK-SMHREELEK 65 (76)
T ss_dssp SCEEESSSCCBCCCCSSCCSSSCHHHH-HHH-HTTHHHHHH
T ss_pred CEEECCCCCCccCCCCCCCCchHHHHH-HHH-HHCHHHHHh
Confidence 3689999999987 223443 563 678877776
No 10
>1bcp_F Pertussis toxin; ADP-ribosyltransferase, transferase, whooping cough; HET: ATP; 2.70A {Bordetella pertussis} SCOP: b.40.2.1 PDB: 1prt_F 1pto_F*
Probab=22.02 E-value=27 Score=27.38 Aligned_cols=14 Identities=50% Similarity=0.956 Sum_probs=12.2
Q ss_pred cceeeeeecceeee
Q 022517 269 HSCLGIYMSGRVLI 282 (296)
Q Consensus 269 ~~~~~~~~~~~~~~ 282 (296)
..||..|||||-|+
T Consensus 25 efcltafmsgrslv 38 (99)
T 1bcp_F 25 EFCLTAFMSGRSLV 38 (99)
T ss_dssp EEEEEEECTTSCCE
T ss_pred hHhHHHHhccHHHH
Confidence 46999999999875
Done!