BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022519
(296 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P52661|GBPR_AZOBR HTH-type transcriptional regulator GbpR OS=Azospirillum brasilense
GN=gbpR PE=1 SV=1
Length = 342
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 223 SVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWM 282
SVS+GT +A V V+ T P+ +A+E +VL +R QG ++F + + P
Sbjct: 107 SVSIGTVMAPAVELVVPVITTLTRDHPDLKIAVAVETSDVLAERVRQGVMDFAIGRLPDH 166
Query: 283 VE 284
V+
Sbjct: 167 VD 168
>sp|P70117|LG3BP_MESAU Galectin-3-binding protein OS=Mesocricetus auratus GN=LGALS3BP PE=2
SV=1
Length = 578
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 177 VQQLVQLFDPVVRAFDGIAGERVSMRVDLECTD-GRNTVGIFSHRRLSVSVGTAIAAFVL 235
+L+ +P +A + G V MRVD EC R+ + F RR+ V++ + L
Sbjct: 171 AHKLILNTNPEAQALWQVVGSSVIMRVDAECMPVVRDFLRYFYSRRIEVTMSSVKCLHKL 230
Query: 236 AVLEGATQ 243
A GATQ
Sbjct: 231 ASAYGATQ 238
>sp|P20151|KLK2_HUMAN Kallikrein-2 OS=Homo sapiens GN=KLK2 PE=2 SV=1
Length = 261
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 36/163 (22%)
Query: 122 KDVFLLNLPE---VRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQ 178
D+ LL L E + +VLG+PT GT + WG + P E+LR RS
Sbjct: 119 HDLMLLRLSEPAKITDVVKVLGLPTQEPALGTTCYASGWGSIE-----PEEFLRPRS--L 171
Query: 179 QLVQLF----DPVVRAFDGIAGERVS--MRVDLECTDGRNTVGIFSHRRLSVSVGTAIAA 232
Q V L D RA+ E+V+ M T G++T G S L +
Sbjct: 172 QCVSLHLLSNDMCARAYS----EKVTEFMLCAGLWTGGKDTCGGDSGGPLVCN------- 220
Query: 233 FVLAVLEGATQPGVWFPEE---PEGIAIEAREVLLKRASQGTI 272
VL+G T W PE PE A+ + V ++ + TI
Sbjct: 221 ---GVLQGITS---WGPEPCALPEKPAVYTKVVHYRKWIKDTI 257
>sp|Q07797|LG3BP_MOUSE Galectin-3-binding protein OS=Mus musculus GN=Lgals3bp PE=1 SV=1
Length = 577
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 185 DPVVRAFDGIAGERVSMRVDLECTD-GRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQ 243
+P +A + G V MRVD EC R+ + F RR+ VS+ + LA GAT+
Sbjct: 179 NPEAQALWQVVGSSVIMRVDAECMPVVRDFLRYFYSRRIEVSMSSVKCLHKLASAYGATE 238
>sp|O70513|LG3BP_RAT Galectin-3-binding protein OS=Rattus norvegicus GN=Lgals3bp PE=1
SV=2
Length = 574
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 185 DPVVRAFDGIAGERVSMRVDLECTD-GRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQ 243
+P +A + G V MRVD EC R+ + F RR+ VS+ + LA GAT+
Sbjct: 179 NPEAQALWQVVGSSVIMRVDAECMPVVRDFLRYFYSRRIEVSMSSVKCLHKLASAYGATE 238
>sp|Q13424|SNTA1_HUMAN Alpha-1-syntrophin OS=Homo sapiens GN=SNTA1 PE=1 SV=1
Length = 505
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 236 AVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVM-----NKAPWMV 283
A L GA +PG P+ PE + ++ R V +++A G + + NK P ++
Sbjct: 62 AQLNGAAEPGAGPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILI 114
>sp|Q0P5E6|SNTA1_BOVIN Alpha-1-syntrophin OS=Bos taurus GN=SNTA1 PE=2 SV=1
Length = 505
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 236 AVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVM-----NKAPWMV 283
A L GA +PG P PE + ++ R V +++A G + + NK P ++
Sbjct: 62 AQLNGAAEPGAASPPLPEALLLQPRRVTVRKADAGGLGISIKGGRENKMPILI 114
>sp|Q61234|SNTA1_MOUSE Alpha-1-syntrophin OS=Mus musculus GN=Snta1 PE=1 SV=1
Length = 503
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 236 AVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVM-----NKAPWMV 283
A L GA +PG P+ PE + ++ R V +++A G + + NK P ++
Sbjct: 56 AQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILI 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,644,322
Number of Sequences: 539616
Number of extensions: 4316034
Number of successful extensions: 12227
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 12222
Number of HSP's gapped (non-prelim): 9
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)