Query 022519
Match_columns 296
No_of_seqs 116 out of 386
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:09:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1748 LYS9 Saccharopine dehy 100.0 1.1E-28 2.4E-33 235.2 18.7 228 15-258 106-365 (389)
2 PF03435 Saccharop_dh: Sacchar 99.9 3.9E-21 8.4E-26 184.7 12.9 234 5-253 103-366 (386)
3 COG3268 Uncharacterized conser 99.6 2.1E-14 4.5E-19 133.1 10.6 229 14-257 119-366 (382)
4 PLN02819 lysine-ketoglutarate 98.8 1.4E-07 3E-12 100.6 16.4 116 14-146 690-823 (1042)
5 KOG2733 Uncharacterized membra 95.7 0.025 5.4E-07 54.0 6.2 233 14-277 131-420 (423)
6 COG3499 Phage protein U [Gener 47.0 20 0.00044 29.8 2.9 43 242-295 51-93 (147)
7 COG4422 Bacteriophage protein 18.5 63 0.0014 28.4 1.2 128 12-156 6-149 (250)
8 PF07009 DUF1312: Protein of u 17.7 2E+02 0.0043 22.7 3.9 33 90-122 26-61 (113)
9 PF08043 Xin: Xin repeat; Int 16.9 60 0.0013 17.0 0.4 10 280-289 7-16 (16)
10 COG0774 LpxC UDP-3-O-acyl-N-ac 13.7 9.5E+02 0.021 22.6 7.7 41 90-130 133-178 (300)
No 1
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=235.17 Aligned_cols=228 Identities=19% Similarity=0.182 Sum_probs=185.9
Q ss_pred hhhhhhhhhhhhcccccccCCccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecCCCCCC------hh--HHHHHH
Q 022519 15 FLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGAG------PT--ILATSF 86 (296)
Q Consensus 15 ~~~~~~~~~~~~~g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g~g~~G------~~--~~~t~l 86 (296)
|+..+.+...++++...+|+|||+||++|++++++++ |++++|||++ .+.+.-| -. +.+.+|
T Consensus 106 ~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~----~~i~si~iy~------g~~g~~~~~~l~ya~tws~e~~l 175 (389)
T COG1748 106 WKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELF----DEIESIDIYV------GGLGEHGDNPLGYATTWSPEINL 175 (389)
T ss_pred hhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhh----ccccEEEEEE------ecCCCCCCCCccceeeecHHHhH
Confidence 8888888888988999999999999999999996554 5999999998 2222222 11 788999
Q ss_pred HHhCCcceEeeCCeEEEecCCccceEEEcCCCcceeEEEEecCChhhhhhhhcC-CCeEEEEeecC-hHHHHHHHHHHHh
Q 022519 87 LLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG-VPTVSARFGTA-PFFWNWGMVTMQR 164 (296)
Q Consensus 87 ~~l~~p~~v~~~Gr~~~v~~~s~~r~vdFp~~vG~r~~y~i~~pD~~Tlp~~~g-i~~V~~r~g~~-~~~~~~ll~~l~~ 164 (296)
+++.+|+.+|+||+|++|+|+++.+.++||. +|...+|.++|+|+.||.++++ +.+++++++|. +.++++ +++|+.
T Consensus 176 ~e~~~p~~~~~~Gk~~~v~~~~~~~~~~~~~-~G~~~~y~~~~~el~sL~~~i~~~~~~~~~~t~r~~g~~~~-i~~L~~ 253 (389)
T COG1748 176 REYTRPARYWENGKWVEVDPLEEREVFEFPV-IGYGDVYAFYHDELRSLVKTIPGVVRTRFEMTFRYPGHLEV-IKALRD 253 (389)
T ss_pred HHhcCceEEEeCCEEEEecCcccccccccCC-CCceeEEecCCccHHHHHHhCcccceeeEEeecCcccHHHH-HHHHHH
Confidence 9999999999999999999999999999986 7999999999999999999997 78999999999 999998 468888
Q ss_pred hccccccccch--------hhhhhhhhhhhhhhhccccCCceeEEEEEEEe-cCCceEEE---Eeec---------CCcc
Q 022519 165 LFPAEYLRDRS--------KVQQLVQLFDPVVRAFDGIAGERVSMRVDLEC-TDGRNTVG---IFSH---------RRLS 223 (296)
Q Consensus 165 lg~~~lL~~~~--------~~~~l~~~~~~~~~~~~~~~g~~~~m~v~v~g-~~G~~~~~---~~~~---------~~~~ 223 (296)
+| |++.++ ++++++.++.......++ ..+.+.|.++|++ |||+.... .++| ..++
T Consensus 254 lG---ll~~~~v~~~~~i~p~eflk~vl~~~~s~~~~-~~d~t~i~v~v~G~kdG~~~~~~y~~~~~~~~~~~~~~~ais 329 (389)
T COG1748 254 LG---LLSREPVKVQQEIVPLEFLKAVLPDPLSLAPD-YKDVTVIGVEVKGTKDGRDKTVFYNVKDHAEAYSEVGSSAIS 329 (389)
T ss_pred cC---CCcccccccccccchHHHHHHhcccccccCCC-cCceEEEEEEEEEEEcCeeeEEEecchhhHHHhhccccceee
Confidence 86 555442 356666654333333332 3455689999996 69987633 3333 3478
Q ss_pred cccHHHHHHHHHHHHcCC-CCCcccCCcCCCCccHH
Q 022519 224 VSVGTAIAAFVLAVLEGA-TQPGVWFPEEPEGIAIE 258 (296)
Q Consensus 224 ~~Tg~~aa~~A~~ll~G~-~~~Gv~~PE~~~g~~~~ 258 (296)
++||++|+++|++|++|+ ..+||++||++..+++.
T Consensus 330 ~ttg~pa~~~a~ll~~g~~~~~Gv~~~E~l~~~~~~ 365 (389)
T COG1748 330 YTTGVPAAIGAELLAEGEWETPGVVNPEELGPDPFL 365 (389)
T ss_pred hhccccHHHHHHHHHcCCCCcCcEecHHHhCCChhH
Confidence 999999999999999999 89999999999988864
No 2
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=99.85 E-value=3.9e-21 Score=184.67 Aligned_cols=234 Identities=21% Similarity=0.205 Sum_probs=164.6
Q ss_pred hhhhcccchhhhhhhhhhhhhhcccccccCCccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecC--CCCCC---h
Q 022519 5 QFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAG--TGGAG---P 79 (296)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g--~g~~G---~ 79 (296)
+.+++| +-.++.+...+.+|| .+||+||++|++++++++ ...++++++++.+ -..-.+. ..+.+ .
T Consensus 103 ~~~~l~---~~a~~~g~~~l~~~G-----~~PGl~~~~a~~~~~~~~-~~~~~v~~~~~~~-g~~~~p~~~~~~~~~~~~ 172 (386)
T PF03435_consen 103 EMLALD---EEAKEAGVTALPGCG-----FDPGLSNLLARYAADELD-AEGDEVESVDIYV-GGLPAPEAPDNPLGYKFT 172 (386)
T ss_dssp HHHHCH---HHHHHTTSEEE-S-B-----TTTBHHHHHHHHHHHHHH-HTTHEEEEEEEEE-EEEEEGCG--TTTSEEBS
T ss_pred HHHHHH---HHHHhhCCEEEeCcc-----cccchHHHHHHHHHHHhh-hhcccceEEEEEE-ccccCCCCCCCCccccee
Confidence 345555 555566677777776 599999999999997776 6666888888665 2110000 01111 2
Q ss_pred hHHHHHHHHhCCcceEeeCCeEEEecCCccceEEEcCCCcceeEEEEecCChhhhhhhhcC-CC---eEEEEeecChHHH
Q 022519 80 TILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG-VP---TVSARFGTAPFFW 155 (296)
Q Consensus 80 ~~~~t~l~~l~~p~~v~~~Gr~~~v~~~s~~r~vdFp~~vG~r~~y~i~~pD~~Tlp~~~g-i~---~V~~r~g~~~~~~ 155 (296)
-+.+..++++..|..+|+||+++++++++..++++||.++++..+|.+.|+|..++++++. ++ ++..+....+.++
T Consensus 173 ws~~~~l~e~~~~~~~~~~G~~~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~ 252 (386)
T PF03435_consen 173 WSPEGVLEEYSPPARVYRDGKWVEVPPFSEEERVDFPYPIGPGGAYEAFHPEDSTLTRSFYGLPEVRNVIRKTLRYPGFL 252 (386)
T ss_dssp S-HHHHHHHHCS-EEEEETTEEEEEETTTTCCCETEEE-SSTTECEEEEEECBGTTHHHHTT-TTTSEEEEEEEEETTHH
T ss_pred eeehhhHHhhcccceEeeCCEEEEecCccccceeeeeeEecccceeeeecCcCCceeeEeecCCCcccEEEEEeeEhhHH
Confidence 2677888889999999999999999999999999999889999999999999999999886 33 8999999999999
Q ss_pred HHHHHHHHhhccccccccchh------hhhhhhhhhhhhhhccccCCceeEEEEEEEe--cCCceEEEE--ee-------
Q 022519 156 NWGMVTMQRLFPAEYLRDRSK------VQQLVQLFDPVVRAFDGIAGERVSMRVDLEC--TDGRNTVGI--FS------- 218 (296)
Q Consensus 156 ~~ll~~l~~lg~~~lL~~~~~------~~~l~~~~~~~~~~~~~~~g~~~~m~v~v~g--~~G~~~~~~--~~------- 218 (296)
+.+. ++..++ +++.... .+.++.+.....+..+ ...+...|+++++| ++|++.... ..
T Consensus 253 ~~~~-~l~~lg---l~~~~~~~~~~~p~~~l~~~l~~~~~~~~-~~~d~~~~~v~v~G~~~~G~~~~~~~~~~~~~~~~~ 327 (386)
T PF03435_consen 253 NVMK-LLKDLG---LLSEEPVYVYVSPRDLLAALLEKRLRPGP-GERDMVVLRVEVEGWDKDGKPVRRTSYLVYPSGDPI 327 (386)
T ss_dssp HHHH-HHHHTT---TTSHCBEGGGSCHHHHHHHHHHHHSCTTT-T-SEEEEEEEEEEEEETTCEEEEEEEEEEEEEEECC
T ss_pred HHHH-HHHhhc---ccCCccccchhhHHHHHHhhChhhcCCcc-cccCceeEEEEEEEEeCCCCEEEEEEeeceeccccc
Confidence 9865 777765 5554431 3444433322222111 23455778888885 688877221 11
Q ss_pred ---cCCcccccHHHHHHHHHHHHcCC-CCCcccCCcCCC
Q 022519 219 ---HRRLSVSVGTAIAAFVLAVLEGA-TQPGVWFPEEPE 253 (296)
Q Consensus 219 ---~~~~~~~Tg~~aa~~A~~ll~G~-~~~Gv~~PE~~~ 253 (296)
...++.+||.+++++|+++++|+ ..+||++||++.
T Consensus 328 ~~~~~~m~~~tg~~~ai~a~ll~~g~~~~~GV~~PE~~~ 366 (386)
T PF03435_consen 328 ETGGSAMARTTGIPAAIAAQLLADGEITRPGVVPPEAAF 366 (386)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHTTSSH-SEEE-SHHCC
T ss_pred CCCCCccHHHhhHHHHHHHHHHHCCCcCCCeEECHHHhC
Confidence 23478999999999999999999 699999999984
No 3
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=2.1e-14 Score=133.06 Aligned_cols=229 Identities=17% Similarity=0.084 Sum_probs=151.9
Q ss_pred hhhhhhhhhhhhhcccccccCCccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecCCCCCChhHHHHHHHHhCCcc
Q 022519 14 SFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGAGPTILATSFLLLGEEV 93 (296)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g~g~~G~~~~~t~l~~l~~p~ 93 (296)
-=++..+..+.-|||||+||+|=| +++...+.+. ..-.++-..++.+ .++. ..+++.+++++..+.+....
T Consensus 119 ~~A~~~Ga~Ii~~cGFDsIPsDl~----v~~l~~~~~~-d~~~~~~~t~l~l-~s~t---~~g~S~GTaat~~e~l~~~~ 189 (382)
T COG3268 119 AQAADAGARIIPGCGFDSIPSDLG----VYALLKQALP-DGTEELIATHLAL-GSFT---GSGISGGTAATSVEGLATAG 189 (382)
T ss_pred HHHHhcCCEEeccCCCCcCccchH----HHHHHHhhCc-ccccchhhhheee-eecc---cCCcccccHHHHHHHHHhcc
Confidence 346677888999999999999933 4444432222 2222344556555 3332 23678889999999999999
Q ss_pred eEeeCCeEEEecCCccceE---EEcCCCcceeEEEEecCChhhhhhhhcCCC---eEEEEeecChHHHHHHHHHHHhhcc
Q 022519 94 VAYNKGEEITLEPYSGMLS---VDFGKGIGRKDVFLLNLPEVRSAREVLGVP---TVSARFGTAPFFWNWGMVTMQRLFP 167 (296)
Q Consensus 94 ~v~~~Gr~~~v~~~s~~r~---vdFp~~vG~r~~y~i~~pD~~Tlp~~~gi~---~V~~r~g~~~~~~~~ll~~l~~lg~ 167 (296)
..+++||.+.+|..-..++ +|||...|.+.+..++||++.+..++..|+ +++.|+=..+-.+-. ...+.++
T Consensus 190 ~~~~~gr~~~~P~~~~~~r~~~iDf~~~rg~~~a~~~~Wg~V~a~~~t~iv~rsn~l~~~~~~~pv~~~a-~~~~~~~-- 266 (382)
T COG3268 190 KDPEAGRLLRVPYALKKRRGAEIDFPSRRGRRLAPTLPWGFVAAAFNTTIVPRSNALEVWIYAAPVLALA-GRGIGAL-- 266 (382)
T ss_pred CCcccCceeccCceeccCCCCCCCcccCCccccCcccCchhhhhhhccCccccccceeeeechhHHHHHH-Hhccchh--
Confidence 9999999999999988888 999877899999999999999999999998 888886544433321 2222221
Q ss_pred ccccccchhhhhhhhhhhhhhhhccc-cCC--------ceeEEEEEEEecCCceEEEEeecCCcccccHH-HHHHHHHHH
Q 022519 168 AEYLRDRSKVQQLVQLFDPVVRAFDG-IAG--------ERVSMRVDLECTDGRNTVGIFSHRRLSVSVGT-AIAAFVLAV 237 (296)
Q Consensus 168 ~~lL~~~~~~~~l~~~~~~~~~~~~~-~~g--------~~~~m~v~v~g~~G~~~~~~~~~~~~~~~Tg~-~aa~~A~~l 237 (296)
..+|.+...+..+..+. .+..++ ..| ....+|.+.+++.|.+..+.+.+.+-|+.|++ .+.++..+.
T Consensus 267 ~~ll~~~~~~~~~r~lv---~r~~~k~g~GPt~e~qarg~~~~~~~~~tatG~r~~ari~t~~~y~stav~~a~~~l~~a 343 (382)
T COG3268 267 LPLLGSAYVRDLLRGLV---LRVVPKPGTGPTEEAQARGRYTIEGETTTATGERYTARITTDNDYYSTAVLLAQAALALA 343 (382)
T ss_pred hhhhhhHHHhhhhHhhh---heeccCCCCCCCHHHHhcCcceEEEEEEeccCCceeeEEecccchHHHHHHHHHHHHHHH
Confidence 12222222222111111 111221 112 23568888888889888888888665555554 444555555
Q ss_pred HcCC---CCCcccCCcCCCCccH
Q 022519 238 LEGA---TQPGVWFPEEPEGIAI 257 (296)
Q Consensus 238 l~G~---~~~Gv~~PE~~~g~~~ 257 (296)
++.. .+.||+||..++|.+.
T Consensus 344 ld~~~~~~~gGv~TPA~~lG~dl 366 (382)
T COG3268 344 LDRDKLSEPGGVLTPAAALGADL 366 (382)
T ss_pred hcCCcccCCCcccChHHHHhHHH
Confidence 5555 6889999999997543
No 4
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.80 E-value=1.4e-07 Score=100.60 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=77.2
Q ss_pred hhhhhhhhhhhhhcccccccCCccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecCCCC--CChh--------HHH
Q 022519 14 SFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGG--AGPT--------ILA 83 (296)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g~g~--~G~~--------~~~ 83 (296)
+=+++.++.++..+| +|||+.+++|+++.++.. .+.+++.++.... .|... ...+ +.+
T Consensus 690 e~Ak~AGV~~m~e~G-----lDPGid~~lA~~~Id~~~-~~~GkI~s~~s~~------GGLP~pe~~~npL~YkfsWSp~ 757 (1042)
T PLN02819 690 SKAKEAGITILCEMG-----LDPGIDHMMAMKMIDDAH-ERGGKVKSFTSYC------GGLPSPEAANNPLAYKFSWNPA 757 (1042)
T ss_pred HHHHHcCCEEEECCc-----cCHHHHHHHHHHHHHhhc-ccCCcEEEEEEEE------cCccCcccCCCcccccccCCHH
Confidence 445556666666555 699999999999996653 3456777776544 21110 0111 556
Q ss_pred HHHHHhCCcceEeeCCeEEEecC---CccceEEEcCC--CcceeEEEEecCChhhhhhh--hcCCC-eEEE
Q 022519 84 TSFLLLGEEVVAYNKGEEITLEP---YSGMLSVDFGK--GIGRKDVFLLNLPEVRSARE--VLGVP-TVSA 146 (296)
Q Consensus 84 t~l~~l~~p~~v~~~Gr~~~v~~---~s~~r~vdFp~--~vG~r~~y~i~~pD~~Tlp~--~~gi~-~V~~ 146 (296)
-.+..+.+|.++++||++++||+ |+..+.++|+. ++ .-.+|. .-| |+++ .+|++ ++.+
T Consensus 758 gvi~~~~npa~~i~~G~~~~V~~~~l~~~~~~~~~~~~p~~-~lE~~p--NRd--Sl~y~~~Ygi~~~a~t 823 (1042)
T PLN02819 758 GAIKAGQNPAVYKSNGQIIHVDGENLFASAVRFRLPNLPAF-ALECLP--NRD--SLVYGELYGIEKEAAT 823 (1042)
T ss_pred HHHHHhcCcceeeECCEEEEecchhhhhhccccccccCCCc-ceEEcc--CCC--cchhHHHhCCCcccce
Confidence 67888899999999999999999 88898998753 12 333443 224 5554 77776 6654
No 5
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=95.68 E-value=0.025 Score=54.00 Aligned_cols=233 Identities=13% Similarity=0.119 Sum_probs=111.2
Q ss_pred hhhhhhhhhhhhhcccccccCCccHHHHHHHHHHHHhcccCCCC-CcEEEEeeeeeeeecCC-CC----CChhHHHHHHH
Q 022519 14 SFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGE-PERLRYYVRFSYYTAGT-GG----AGPTILATSFL 87 (296)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~-ve~IdI~i~~~~~~~g~-g~----~G~~~~~t~l~ 87 (296)
+-+++.+.++.-+||||-||+|=||. .+. ..++. +++|+=.+ ..+. |. +..+|.++.+.
T Consensus 131 d~A~ekGVYIVsaCGfDSIPaDlGv~-----f~~-----k~fdg~ln~VEsfl-----~Lh~~gp~G~sln~gTweSall 195 (423)
T KOG2733|consen 131 DLAKEKGVYIVSACGFDSIPADLGVM-----FLR-----KNFDGVLNHVESFL-----QLHSKGPSGYSLNTGTWESALL 195 (423)
T ss_pred HHHHhcCeEEEeecccCCCCccceee-----eeh-----hhccccHHHHHHHH-----hhhccCCcccccccccHHHHHH
Confidence 55677889999999999999996653 333 22223 44444222 1222 22 33557887776
Q ss_pred HhCCcc---eEee----------CCeEEEecCCccceEEEcCCCcceeEEEEecCC--hh-------hhhhhhcCCCeEE
Q 022519 88 LLGEEV---VAYN----------KGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLP--EV-------RSAREVLGVPTVS 145 (296)
Q Consensus 88 ~l~~p~---~v~~----------~Gr~~~v~~~s~~r~vdFp~~vG~r~~y~i~~p--D~-------~Tlp~~~gi~~V~ 145 (296)
.++.-- .+++ .+..+..++.+..++.+ -|.+|+| |. .-+...-+++-|.
T Consensus 196 g~~n~~~l~~lR~~~~p~~ip~~~~~lkkR~~l~~~~e~~---------g~alpFpgaD~SVV~RSQ~~l~~~~~~rPv~ 266 (423)
T KOG2733|consen 196 GVANASELKALRKSIMPQPIPNGCPPLKKRPTLWKIKEKG---------GVALPFPGADKSVVRRSQYYLYESRKVRPVH 266 (423)
T ss_pred HhcChHHHHHHHhhhCCCcCccCCCCCCCCCceeeeeecc---------ceEeecCCCchhheehHHHHHHHhccCCcee
Confidence 554321 1111 11122233333333322 2333333 33 3344445666665
Q ss_pred E--EeecChHHHHHHHHHHHhhccccccccch-hhhhhhhhhhhhhh-hccc-------cCCceeEEEEEEEe-cCC---
Q 022519 146 A--RFGTAPFFWNWGMVTMQRLFPAEYLRDRS-KVQQLVQLFDPVVR-AFDG-------IAGERVSMRVDLEC-TDG--- 210 (296)
Q Consensus 146 ~--r~g~~~~~~~~ll~~l~~lg~~~lL~~~~-~~~~l~~~~~~~~~-~~~~-------~~g~~~~m~v~v~g-~~G--- 210 (296)
+ ++.+++.+....+.++..+ .+++..-. .++.|-.+++...- .+.+ ....+-.||-...| +++
T Consensus 267 ~~ay~~~~s~~~~~~~~~~~~~--~~~fskf~~gR~lLlkyP~~fSfg~fsksGPSe~qm~~AtFt~~f~g~Gy~~~~~l 344 (423)
T KOG2733|consen 267 MQAYITVGSRFGAIKLVFFGWI--LGFFSKFSFGRRLLLKYPDFFSFGMFSKSGPSEEQMEEATFTMWFFGYGYKEGEPL 344 (423)
T ss_pred EEEEEeeccchHHHHHHHHHHH--HHHHHhhhHHHHHHHhCcccccccccccCCCCHHHHhhcEEEEEEEEeccCCCCcc
Confidence 4 7788887766544433221 11221111 11111111111100 0100 11222345544443 222
Q ss_pred ---------ceEEEEeecCC-cccccHHHHHHHHHHHHcCC----CCCcccCCcCCCCccHHHHHHHHHHhhccchhhhh
Q 022519 211 ---------RNTVGIFSHRR-LSVSVGTAIAAFVLAVLEGA----TQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVM 276 (296)
Q Consensus 211 ---------~~~~~~~~~~~-~~~~Tg~~aa~~A~~ll~G~----~~~Gv~~PE~~~g~~~~~~~~~l~~~~~~~~~~~~ 276 (296)
++....+.-+| +|-.|.++.+-.|.-+|... ...||+||..+++.-. |.+.-..-+++|++
T Consensus 345 ~~~~~~~~~~kl~~~~sGPd~gYiaT~i~vlsaalt~L~~~~~lpk~GGV~tPaaaF~~T~-----i~~~L~~~GI~Fel 419 (423)
T KOG2733|consen 345 DKQHEQKTDKKLLVRCSGPDPGYIATSICVLSAALTLLKDKDKLPKGGGVYTPAAAFGNTK-----IIDRLAKHGIKFEL 419 (423)
T ss_pred ccccccccccEEEEEecCCCcchhhccHHHHHHHHHHHHHhhcCCCCCCccCchhhhcCCh-----HHHHHHhcCceEEE
Confidence 22244555555 56666666666666666542 2369999999997653 44444445566665
Q ss_pred h
Q 022519 277 N 277 (296)
Q Consensus 277 ~ 277 (296)
.
T Consensus 420 ~ 420 (423)
T KOG2733|consen 420 I 420 (423)
T ss_pred E
Confidence 3
No 6
>COG3499 Phage protein U [General function prediction only]
Probab=46.98 E-value=20 Score=29.80 Aligned_cols=43 Identities=30% Similarity=0.501 Sum_probs=32.2
Q ss_pred CCCcccCCcCCCCccHHHHHHHHHHhhccchhhhhhcCCceeecCceeecceec
Q 022519 242 TQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIY 295 (296)
Q Consensus 242 ~~~Gv~~PE~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (296)
.-+||.+||+..|. +..++|-+.|-+|. ||++-+--=.+ +|||
T Consensus 51 tLsGvl~Pe~~GG~--~sL~aL~a~A~~G~--------p~~Li~G~G~i-~Gmf 93 (147)
T COG3499 51 TLSGVLYPEETGGE--SSLDALRALAETGT--------PLPLIDGDGAI-YGMF 93 (147)
T ss_pred EEcceecchhhCCH--hHHHHHHHHHhcCC--------ceEEEcCCceE-EEEE
Confidence 57899999988843 48888888887777 88776544444 6666
No 7
>COG4422 Bacteriophage protein gp37 [Function unknown]
Probab=18.46 E-value=63 Score=28.43 Aligned_cols=128 Identities=11% Similarity=0.132 Sum_probs=65.0
Q ss_pred chhhhhhhhhhhhhhcccccccCCccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecCCCCC--ChhHHHHHHHHh
Q 022519 12 AMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGA--GPTILATSFLLL 89 (296)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g~g~~--G~~~~~t~l~~l 89 (296)
+.+|-..-=-|+.+|.- .+||-|||.|...+++|+ .+ .+|... +. +--+|+. +-+.+..-=..+
T Consensus 6 ~IEWTdaTWNPVaGCti-----~saGCtnCYAM~mA~RLe--AM-g~dKY~-Gl-----tRtsG~ra~wtG~v~~d~~sL 71 (250)
T COG4422 6 SIEWTDATWNPVAGCTI-----LSAGCTNCYAMRMAKRLE--AM-GVDKYQ-GL-----TRTSGGRAKWTGVVTIDPKSL 71 (250)
T ss_pred ceeecccccccccCcee-----ccCCcchHHHHHHHHHHH--hh-Cchhhc-Cc-----ccccCCccceeeEEEeChhhc
Confidence 34666666678888775 488999999999998875 11 122211 11 0001110 111110001134
Q ss_pred CCcceEeeCCeEEEecCCccceEEEcCCC----------cceeEEEEec--CChh-hhhhhhcC-CCeEEEEeecChHHH
Q 022519 90 GEEVVAYNKGEEITLEPYSGMLSVDFGKG----------IGRKDVFLLN--LPEV-RSAREVLG-VPTVSARFGTAPFFW 155 (296)
Q Consensus 90 ~~p~~v~~~Gr~~~v~~~s~~r~vdFp~~----------vG~r~~y~i~--~pD~-~Tlp~~~g-i~~V~~r~g~~~~~~ 155 (296)
..|.. |..-|.+.|-.+|+.=..|.|.. --++..|.|= -||. .++.+.+. .+|| |+|.+-+-.
T Consensus 72 ~iP~t-W~kPR~vFVNSMsDLFH~~V~~~FI~~Vw~VM~~TP~HtYQILTKRp~rm~~v~~~~~~l~NV--WlGtSvEn~ 148 (250)
T COG4422 72 DIPAT-WSKPRRVFVNSMSDLFHADVPLDFIREVWEVMRATPRHTYQILTKRPDRMARVVHKLEVLSNV--WLGTSVENV 148 (250)
T ss_pred cCccc-cCCCceeeehhhHHHhhccchHHHHHHHHHHHHhCcccceehhccCcHHHHHHHhcCCcccce--eeeceechh
Confidence 45544 77777777777777655554421 1234455443 2333 23333344 3555 667766554
Q ss_pred H
Q 022519 156 N 156 (296)
Q Consensus 156 ~ 156 (296)
.
T Consensus 149 ~ 149 (250)
T COG4422 149 R 149 (250)
T ss_pred H
Confidence 3
No 8
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=17.71 E-value=2e+02 Score=22.67 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=26.5
Q ss_pred CCcceEeeCCeEEEecCCcc---ceEEEcCCCccee
Q 022519 90 GEEVVAYNKGEEITLEPYSG---MLSVDFGKGIGRK 122 (296)
Q Consensus 90 ~~p~~v~~~Gr~~~v~~~s~---~r~vdFp~~vG~r 122 (296)
+.-..++.||+....-|++. .++++|+.+.|.-
T Consensus 26 ~~~~~I~~~g~~~~~i~L~~~~~~~~i~i~~~~g~~ 61 (113)
T PF07009_consen 26 GKYAVIYVDGKEVKRIPLDKVNEDKTIEIDGDGGYN 61 (113)
T ss_dssp EEEEEEEETTEEEEEEETTS-BSEEEEEEETTTCEE
T ss_pred CeEEEEEECCEEEEEEECCCCCCCEEEEEecCCcEE
Confidence 45668899999999999988 8999997655554
No 9
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=16.91 E-value=60 Score=16.95 Aligned_cols=10 Identities=40% Similarity=1.072 Sum_probs=7.3
Q ss_pred CceeecCcee
Q 022519 280 PWMVETEPKE 289 (296)
Q Consensus 280 ~~~~~~~~~~ 289 (296)
-|..|+.|++
T Consensus 7 ~wlFEtqplD 16 (16)
T PF08043_consen 7 RWLFETQPLD 16 (16)
T ss_pred EEEeecccCC
Confidence 4888888864
No 10
>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]
Probab=13.70 E-value=9.5e+02 Score=22.63 Aligned_cols=41 Identities=24% Similarity=0.507 Sum_probs=31.7
Q ss_pred CCcceEeeCCeEEEecCCccce---EEEcCCC-ccee-EEEEecCC
Q 022519 90 GEEVVAYNKGEEITLEPYSGML---SVDFGKG-IGRK-DVFLLNLP 130 (296)
Q Consensus 90 ~~p~~v~~~Gr~~~v~~~s~~r---~vdFp~~-vG~r-~~y~i~~p 130 (296)
.+|+.+.++++|....|+.+.| ++||+.+ +|++ ..|.++..
T Consensus 133 ~~pV~v~~gdk~~~~~P~dg~r~~~~IdF~~p~Ig~~~q~~~~~~~ 178 (300)
T COG0774 133 KKPVRVEDGDKWAEFTPYDGFRLSYTIDFDHPAIGRQWQSFEFDFS 178 (300)
T ss_pred eccEEEecCCEEEEEecCCCcEEEEEEecCCcccCCcceeEEEecc
Confidence 4799999999999999997766 7888776 7773 25666653
Done!