Query 022519
Match_columns 296
No_of_seqs 116 out of 386
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 06:49:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ina_A Saccharopine dehydrogen 100.0 6.9E-30 2.4E-34 245.7 21.8 234 9-258 117-380 (405)
2 2z2v_A Hypothetical protein PH 99.9 1.3E-23 4.6E-28 199.5 20.7 210 28-256 128-345 (365)
3 3abi_A Putative uncharacterize 99.8 1E-19 3.4E-24 172.2 19.3 230 14-268 119-356 (365)
4 1ff9_A Saccharopine reductase; 99.4 4.1E-12 1.4E-16 123.6 16.1 213 28-249 119-423 (450)
5 2axq_A Saccharopine dehydrogen 99.4 2.2E-12 7.7E-17 126.0 12.3 214 26-249 137-440 (467)
6 2ph5_A Homospermidine synthase 99.2 1.5E-11 5.1E-16 119.7 9.1 226 9-253 133-422 (480)
7 2ww6_A Fibritin, T4 fibritin; 14.0 89 0.0031 17.7 1.5 14 92-105 11-24 (27)
8 3ld7_A LIN0431 protein; DUF131 12.0 2.7E+02 0.0093 20.6 4.3 37 92-128 9-48 (101)
9 2lq1_A De novo designed antifr 11.4 59 0.002 17.8 0.3 14 32-45 4-17 (26)
10 2j5d_A BNIP3 TM, BCL2/adenovir 10.3 12 0.00041 24.1 -3.2 18 279-296 21-38 (45)
No 1
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=99.97 E-value=6.9e-30 Score=245.74 Aligned_cols=234 Identities=16% Similarity=0.142 Sum_probs=182.7
Q ss_pred cccchhhhhhhhhhhhhhcccccccCCccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecCCCCCCh-----hHHH
Q 022519 9 LDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGAGP-----TILA 83 (296)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g~g~~G~-----~~~~ 83 (296)
++|+++|+..+.+...++....++|++||++|++++++++ +.++++++|+|+. +..+ +.|. =+.+
T Consensus 117 ~~~~~~~~l~~~a~~aG~~~i~g~G~~PG~~~l~a~~~~~----~~~~~i~~i~i~~----~~gg--~~g~~~~~~~sp~ 186 (405)
T 4ina_A 117 FEYKEQWAFHDRYKEKGVMALLGSGFDPGVTNVFCAYAQK----HYFDEIHEIDILD----CNAG--DHGYPFATNFNPE 186 (405)
T ss_dssp BCSHHHHTTHHHHHHHTCEEEECCBTTTBHHHHHHHHHHH----HTCSEEEEEEEEE----EECC--BCSSSSCCSSCHH
T ss_pred hhhHHHHHHHHHHHHhCCEEEEcCCCCccHHHHHHHHHHH----hccCcccEEEEEE----ecCC--CCCccceeeeCHH
Confidence 4566666666666665666667778999999999999993 3467999999754 2121 2221 1467
Q ss_pred HHHHHhCCcceEeeCCeEEEecCCccceEEEcCCCcceeEEEEecCChhhhhhhhcC-CCeEEEEeecChHHHHHHHHHH
Q 022519 84 TSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG-VPTVSARFGTAPFFWNWGMVTM 162 (296)
Q Consensus 84 t~l~~l~~p~~v~~~Gr~~~v~~~s~~r~vdFp~~vG~r~~y~i~~pD~~Tlp~~~g-i~~V~~r~g~~~~~~~~ll~~l 162 (296)
++++++.+|+.+|+||+|+++||+++.+.++||. +|++.+|+++|||+.|++++++ +++|++|++|++.+.+.+ .+|
T Consensus 187 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~fp~-~G~~~~y~~~~~e~~tl~~~~~~~~~v~~~~~~~~~~~~~~-~~L 264 (405)
T 4ina_A 187 INLREVSSKGRYWENGEWIETEPMEIMQVWDYPE-VGPKDSYLLYHEELESLVRNIKGLKRIRFFMTFGQSYLTHM-RCL 264 (405)
T ss_dssp HHHHHTTSCEEEEETTEEEEESTTCCEEEEEETT-TEEEEEEEECCTHHHHHHHHSTTCCEEEEEEECCHHHHHHH-HHH
T ss_pred HHHHHhcCCcEEEECCEEEEecCCceeEEEECCC-CceeeEEEeCCCcHHHHHhhCCCcceEEeecccCHHHHHHH-HHH
Confidence 8899999999999999999999999999999996 9999999999999999999997 799999999999999884 577
Q ss_pred Hhhccccccccch---------hhhhhhhhhhhhhhhccccCCceeEEEEEEEe-cCCceE----EEEeecC--------
Q 022519 163 QRLFPAEYLRDRS---------KVQQLVQLFDPVVRAFDGIAGERVSMRVDLEC-TDGRNT----VGIFSHR-------- 220 (296)
Q Consensus 163 ~~lg~~~lL~~~~---------~~~~l~~~~~~~~~~~~~~~g~~~~m~v~v~g-~~G~~~----~~~~~~~-------- 220 (296)
+++| |++..+ ++++|+.++.....+.+. ..+...|+++++| +||++. +.+++|+
T Consensus 265 ~~lG---l~~~~~v~~~g~~v~p~~~l~~~l~~~~~~~~~-~~d~~~i~~~v~g~~~G~~~~~~~~~~~~~~~~~~~~~~ 340 (405)
T 4ina_A 265 ENVG---MLRIDEIEVNGCKVVPIQVLKALLPDPASLASR-TKGKTNIGCYIKGIKEGKARTIYIYNVCDHESCYREVNA 340 (405)
T ss_dssp HHHT---TTCCSCEEETTEEECHHHHHHHHSCCHHHHTTT-CBSEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHSS
T ss_pred HHcC---CCCCCceeeCCceecHHHHHHHhcchhhccCCC-CCCeEEEEEEEEEEECCeEEEEEEEEEeccccccccccc
Confidence 8886 444332 356666554333333332 3455789999996 799866 4567764
Q ss_pred -CcccccHHHHHHHHHHHHcCC-CCCcccCCcCCCCccHH
Q 022519 221 -RLSVSVGTAIAAFVLAVLEGA-TQPGVWFPEEPEGIAIE 258 (296)
Q Consensus 221 -~~~~~Tg~~aa~~A~~ll~G~-~~~Gv~~PE~~~g~~~~ 258 (296)
.++++||+|++++|++|++|+ ..+||+.||+++..|+.
T Consensus 341 ~a~~~ttg~p~~i~a~li~~G~~~~~Gv~~~e~~~~~~fl 380 (405)
T 4ina_A 341 QAISYTTGVPAMIGAKLMLEGKWSGKGVFNMEELDPDPFM 380 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSSCCSEEEEGGGSCSHHHH
T ss_pred eEEEeccChhHHHHHHHHhCCccCCCceecccccCcHHHH
Confidence 368999999999999999999 89999999998765553
No 2
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=99.91 E-value=1.3e-23 Score=199.48 Aligned_cols=210 Identities=14% Similarity=0.050 Sum_probs=158.8
Q ss_pred ccccccCCccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecCCCCCC---hhHHHHHHHHhCCcceEeeCCeEEEe
Q 022519 28 FWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGAG---PTILATSFLLLGEEVVAYNKGEEITL 104 (296)
Q Consensus 28 g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g~g~~G---~~~~~t~l~~l~~p~~v~~~Gr~~~v 104 (296)
...++|+|||++|++|++++ ++++ ++++++++ .+.-.......+ .-+.+.+++++..|+.+|+||+|+++
T Consensus 128 ~l~g~G~dPG~~~~~a~~~~-----~~~~-v~~i~~~~-Gglp~~~~~p~~y~~sws~~~~i~~~~~~~~~~~~G~~~~v 200 (365)
T 2z2v_A 128 IVFDAGFAPGLSNILMGRIF-----QELD-LKEGYIYV-GGLPKDPKPPLYYKITWSPRDLIEEYTRPARVIRNGKVSKV 200 (365)
T ss_dssp EECSCBTTTBHHHHHHHHHH-----HHSC-EEEEEEEE-EEEESSCCTTTCCCCCSCHHHHHHHHHSCEEEEETTEEEEE
T ss_pred EEECCCCcchHHHHHHHHHH-----HhcC-CCEEEEEe-ccCCCCCCCCceeEEEecHHHHHHHhcCcceEEECCEEEEe
Confidence 34455679999999999999 4577 99999765 211000000111 11557889999999999999999999
Q ss_pred cCCccceEEEcCCCcceeEEEEecCChhhhhhhhcCCCeEEEEeecChHHHHHHHHHHHhhccccccccchhhhhhhhhh
Q 022519 105 EPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLF 184 (296)
Q Consensus 105 ~~~s~~r~vdFp~~vG~r~~y~i~~pD~~Tlp~~~gi~~V~~r~g~~~~~~~~ll~~l~~lg~~~lL~~~~~~~~l~~~~ 184 (296)
||+++.+.++||. ++..+|. |+++.|++++++++++.+++.+.+.+.+. +++|..+| |++.+...+.++.+.
T Consensus 201 ~~~~~~~~~~~p~--~~~e~~~--~~~l~sl~~~~~~~~~~~~t~r~~g~~~~-~~~L~~lG---l~~~~~~~~~~~~l~ 272 (365)
T 2z2v_A 201 DPLSEVKKVKIGK--FEFEAFI--SDGLRSMLETINSERLEEWTLRWPGHLEK-IKVLRELG---FFKPENLDFTLRVIE 272 (365)
T ss_dssp CTTTCEEEEEETT--EEEEEEE--ESCCTTHHHHSCCSEEEEEEEECTTHHHH-HHHHHHTT---TTSHHHHHHHHHHHG
T ss_pred cCCCCceEEEcCC--eeEEEEe--CCChhhHhcCCcCCeEEEeeeeccCHHHH-HHHHHHCC---CCCCchHHHHHHccc
Confidence 9999999999996 4777775 67999999999999999999999999987 45778875 776655333333221
Q ss_pred hhhhhhccccCCceeEEEEEEEecCCceEEEEeecCC-----cccccHHHHHHHHHHHHcCCCCCcccCCcCCCCcc
Q 022519 185 DPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRR-----LSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIA 256 (296)
Q Consensus 185 ~~~~~~~~~~~g~~~~m~v~v~g~~G~~~~~~~~~~~-----~~~~Tg~~aa~~A~~ll~G~~~~Gv~~PE~~~g~~ 256 (296)
+.... ...+...|+++++|..++..+.++++++ ++++||+|++++|+++++|+.++||++||+++..+
T Consensus 273 -p~~~~---~~~d~~~~~v~~~g~~~~~~~~~~~~~~~g~sams~ttg~p~~i~a~li~~G~~~~Gv~~pE~~~~~~ 345 (365)
T 2z2v_A 273 -PLMRY---ETKDFSIMKVVGKGEEGEMEFFLYDEEDSMFSSMSRVTGFTAAIISRIVAENTCTFGVIPPEILGMRE 345 (365)
T ss_dssp -GGGCS---SCCEEEEEEEEEEESSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHTTCSCSEEECGGGGTSSH
T ss_pred -ccccC---CCCCEEEEEEEEEcCceEEEEEEEecCCCcceEeehhhhhHHHHHHHHHHCCCcccceecHHHcCCch
Confidence 22111 1256678899999865555577787765 78999999999999999999999999999998654
No 3
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=99.84 E-value=1e-19 Score=172.21 Aligned_cols=230 Identities=11% Similarity=0.009 Sum_probs=159.7
Q ss_pred hhhhhhhhhhhhhcccccccCCccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecCCCCCC---hhHHHHHHHHhC
Q 022519 14 SFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGAG---PTILATSFLLLG 90 (296)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g~g~~G---~~~~~t~l~~l~ 90 (296)
+-+++.++.++.+|| .|||++|++|+++.++++ ++.+.+++ ...-....+..+ .-+.+.+++++.
T Consensus 119 ~~a~~~g~~~i~~~G-----~~PG~~~~~a~~~~~~~~------~~~~~~~~-gg~p~~~~~~~~y~~~~s~~~~i~~~~ 186 (365)
T 3abi_A 119 DEAEKAQVTIVFDAG-----FAPGLSNILMGRIFQELD------LKEGYIYV-GGLPKDPKPPLYYKITWSPRDLIEEYT 186 (365)
T ss_dssp HHHHHTTCEEECCCB-----TTTBHHHHHHHHHHHHSC------EEEEEEEE-EEEESSCCTTTCCCCCSCHHHHHHHHH
T ss_pred hhhccCCceeeecCC-----CCCchHHHHHHHHHHhcc------ccceeEEe-cccCCCCCCcchhceeechhhhHHhhC
Confidence 444555556566565 699999999999995543 44444433 111000011111 116788899999
Q ss_pred CcceEeeCCeEEEecCCccceEEEcCCCcceeEEEEecCChhhhhhhhcCCCeEEEEeecChHHHHHHHHHHHhhccccc
Q 022519 91 EEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEY 170 (296)
Q Consensus 91 ~p~~v~~~Gr~~~v~~~s~~r~vdFp~~vG~r~~y~i~~pD~~Tlp~~~gi~~V~~r~g~~~~~~~~ll~~l~~lg~~~l 170 (296)
+|..+|+||+++.++|+++.+.++||. +. .+.+++.++.++..+++++++..++.+.+.+.+.+ ..+..+| +
T Consensus 187 ~~~~~~~~G~~~~v~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~t~r~~g~~~~~-~~L~~lG---l 258 (365)
T 3abi_A 187 RPARVIRNGKVSKVDPLSEVKKVKIGK--FE--FEAFISDGLRSMLETINSERLEEWTLRWPGHLEKI-KVLRELG---F 258 (365)
T ss_dssp SCEEEEETTEEEEECTTTCEEEEEETT--EE--EEEEECSCCTTHHHHSCCSEEEEEEEECTTHHHHH-HHHHHTT---T
T ss_pred CCcEEEECCeEEEecCcCcceEEecCC--cc--eeeecccchhhhhhccCcCceeeeecccccHHHHH-HHHHHhc---C
Confidence 999999999999999999999999975 33 45567889999999999999999999999999874 5777765 4
Q ss_pred cccchhhhhhhhhhhhhhhhccccCCceeEEEEEEEecCCceEEEEeecCC-----cccccHHHHHHHHHHHHcCCCCCc
Q 022519 171 LRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRR-----LSVSVGTAIAAFVLAVLEGATQPG 245 (296)
Q Consensus 171 L~~~~~~~~l~~~~~~~~~~~~~~~g~~~~m~v~v~g~~G~~~~~~~~~~~-----~~~~Tg~~aa~~A~~ll~G~~~~G 245 (296)
+.... ++.+... +.+.++....+...|++++++.+++..+.++++.+ ++.+||.+++++|+++++|..++|
T Consensus 259 ~~~~~-~~~~~~~---l~~~~~~~~~d~~~~~V~g~~~~~~~~~~~~~~~d~~~sAMa~tTG~~~a~~a~lil~g~i~~G 334 (365)
T 3abi_A 259 FKPEN-LDFTLRV---IEPLMRYETKDFSIMKVVGKGEEGEMEFFLYDEEDSMFSSMSRVTGFTAAIISRIVAENTCTFG 334 (365)
T ss_dssp TSHHH-HHHHHHH---HGGGGCSSCCEEEEEEEEEEETTEEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHTTCSCSE
T ss_pred CCcch-HHHHHhh---hHHhcCCccCceEEEEEEEEeCCCeEEEEEEEccCCCccHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 44332 2222222 22333333445566777777777776666666643 467899999999999999997789
Q ss_pred ccCCcCCCCccHHHHHHHHHHhh
Q 022519 246 VWFPEEPEGIAIEAREVLLKRAS 268 (296)
Q Consensus 246 v~~PE~~~g~~~~~~~~~l~~~~ 268 (296)
|++||++.-... ..+.+|+.-+
T Consensus 335 V~~PE~l~~~~~-~~~~~l~~L~ 356 (365)
T 3abi_A 335 VIPPEILGMRED-TFRRIIDELK 356 (365)
T ss_dssp EECTHHHHHSHH-HHHHHHHHHH
T ss_pred EEChhhcccchh-hHHHHHHHHH
Confidence 999999853332 5555665443
No 4
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A
Probab=99.40 E-value=4.1e-12 Score=123.56 Aligned_cols=213 Identities=15% Similarity=0.140 Sum_probs=131.0
Q ss_pred ccccccCCccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecC--CCCCC---hhHHHHHHHHhCCcceEeeCCeEE
Q 022519 28 FWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAG--TGGAG---PTILATSFLLLGEEVVAYNKGEEI 102 (296)
Q Consensus 28 g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g--~g~~G---~~~~~t~l~~l~~p~~v~~~Gr~~ 102 (296)
...+.|.+||+++++|++++++.. +.-++++++++.. ...-... ....+ .-+.+.++..+..+..+|+||+++
T Consensus 119 ~i~g~g~~pg~~~~~a~~li~q~~-~~gg~i~~~~~~~-G~~p~~~~~~~~l~~~~~~s~~g~l~~~~~~~~~~~~G~~~ 196 (450)
T 1ff9_A 119 VMNEIGLDPGIDHLYAIKTIEEVH-AAGGKIKTFLSYC-GGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVT 196 (450)
T ss_dssp EECSCBBTTBHHHHHHHHHHHHHH-HTTCEEEEEEEEE-EEEECGGGCCSTTSCCCSSCHHHHHHHTTSCEEEEETTEEE
T ss_pred EEeCCCCcCchHHHHHHHHHHHhc-ccCCeeeEEEEEE-cccCccccCCccccceeccChHHHHHHhhChhheEeCCeEE
Confidence 344567899999999999996541 0003677777543 1111000 01111 013345667788999999999999
Q ss_pred EecCCc---cceEEEcCCCcceeEEEEecCChhhhhhhhcCCCeEEE--Eeec-ChHHHHHHHHHHHhhccccccccchh
Q 022519 103 TLEPYS---GMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSA--RFGT-APFFWNWGMVTMQRLFPAEYLRDRSK 176 (296)
Q Consensus 103 ~v~~~s---~~r~vdFp~~vG~r~~y~i~~pD~~Tlp~~~gi~~V~~--r~g~-~~~~~~~ll~~l~~lg~~~lL~~~~~ 176 (296)
++++++ ..+.+||++++ + .-.+++.|...+...+++|++.+ |..+ .+.+.+. +++|.++| |++....
T Consensus 197 ~v~~~~~~~~~~~~~~~~g~-~--~e~~~~~~s~~~~~~~~~~~~~~l~r~tlR~~g~~~~-~~~l~~lG---l~~~~~~ 269 (450)
T 1ff9_A 197 NVAGPELMATAKPYFIYPGF-A--FVAYPNRDSTPYKERYQIPEADNIVRGTLRYQGFPQF-IKVLVDIG---FLSDEEQ 269 (450)
T ss_dssp EECTHHHHHTCEECCSSTTC-C--EEEEECSBCTTHHHHTTCTTCSEEEEEEEEETTHHHH-HHHHHHTT---TTCCCBC
T ss_pred EEeCcchhccceeeecCCCc-e--EEEeccCCcchhHhhcCCCCcceEEEeeEeccCHHHH-HHHHHHcC---CCCCCcc
Confidence 999998 55668885444 3 44566677444444445554432 4444 5677776 46777876 3332221
Q ss_pred ---------hhhhhhhh---------------------------------------------------hhhhhhcc----
Q 022519 177 ---------VQQLVQLF---------------------------------------------------DPVVRAFD---- 192 (296)
Q Consensus 177 ---------~~~l~~~~---------------------------------------------------~~~~~~~~---- 192 (296)
.++++.+. +.+.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~l~~~l~~~~~ 349 (450)
T 1ff9_A 270 PFLKEAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPRGNALDTLCATLEEKMQ 349 (450)
T ss_dssp GGGSSCCBHHHHHHHHHTCSSSSHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHTTTSSCBCCCCSBHHHHHHHHHHHHSS
T ss_pred ccccCCCCHHHHHHHHhCCCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHhhccCCcccccCCCCHHHHHHHHhhHhhc
Confidence 12222210 01111110
Q ss_pred --ccCCceeEEEEEEE-e-cCCceE---EEEeecCC---------cccccHHHHHHHHHHHHcCC-CCCcccCC
Q 022519 193 --GIAGERVSMRVDLE-C-TDGRNT---VGIFSHRR---------LSVSVGTAIAAFVLAVLEGA-TQPGVWFP 249 (296)
Q Consensus 193 --~~~g~~~~m~v~v~-g-~~G~~~---~~~~~~~~---------~~~~Tg~~aa~~A~~ll~G~-~~~Gv~~P 249 (296)
+-..+...|+++++ + +||++. +.+++|.+ ++++||+|++++|+++++|+ ..+||+.|
T Consensus 350 ~~~~e~d~v~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~ama~t~G~p~ai~a~~i~~g~~~~~Gv~~p 423 (450)
T 1ff9_A 350 FEEGERDLVMLQHKFEIENKDGSRETRTSSLCEYGAPIGSGGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAP 423 (450)
T ss_dssp CCTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEECCCTTSSSCCHHHHHHHHHHHHHHHHHHHTSSCCCEEECS
T ss_pred cCCCCCceEEEEEEEEEEecCCCEEEEEEEEEEeccccCCCCccceeHhhchHHHHHHHHHhCCCcCCCceeCC
Confidence 12345577888888 6 799866 45665543 56799999999999999999 78999999
No 5
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.38 E-value=2.2e-12 Score=125.96 Aligned_cols=214 Identities=14% Similarity=0.151 Sum_probs=123.2
Q ss_pred hcccccccCCccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecC--CCCCCh---hHHHHHHHHhCCcceEeeCCe
Q 022519 26 CCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAG--TGGAGP---TILATSFLLLGEEVVAYNKGE 100 (296)
Q Consensus 26 ~~g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g--~g~~G~---~~~~t~l~~l~~p~~v~~~Gr 100 (296)
+....+.|++||+++++|+++.+++. +.-++++++.+.. ..-.... .+..+- =+.+.++.++..|+.+|+||+
T Consensus 137 v~~i~g~G~~PG~~~~~a~~li~q~~-~~g~~~~s~~~wt-G~~p~~~~~~~~l~y~fsws~~g~i~~~~~~a~~~~~G~ 214 (467)
T 2axq_A 137 ITVMNEIGLDPGIDHLYAVKTIDEVH-RAGGKLKSFLSYC-GGLPAPEDSDNPLGYKFSWSSRGVLLALRNSAKYWKDGK 214 (467)
T ss_dssp CEEECSCBBTTBHHHHHHHHHHHHHH-HTTCEEEEEEEEE-EEEECGGGCCSTTSCCBSSCCHHHHHGGGSCEEEEETTE
T ss_pred CEEEecCCcCccchHHHHHHHHHHHH-hccCcceEEEEEe-cccCCcccccccccCcCCCCHHHHHHHhcCCeEEEECCE
Confidence 34455667899999999999886652 1113455555322 0000000 011110 023466778888999999999
Q ss_pred EEEecCCccceEEE----cCCCcceeEEEEecCChhhhhhhhcCCCeEE--EEeec-ChHHHHHHHHHHHhhcccccccc
Q 022519 101 EITLEPYSGMLSVD----FGKGIGRKDVFLLNLPEVRSAREVLGVPTVS--ARFGT-APFFWNWGMVTMQRLFPAEYLRD 173 (296)
Q Consensus 101 ~~~v~~~s~~r~vd----Fp~~vG~r~~y~i~~pD~~Tlp~~~gi~~V~--~r~g~-~~~~~~~ll~~l~~lg~~~lL~~ 173 (296)
|+++++++..+.++ ||. + ...+ +++.|.....+.+++|++. .|..+ .+.+... +++|..+| |++.
T Consensus 215 ~~~v~~~~~~~~~~~~~~~~g-~-~~e~--~~~~~~~~~~e~y~i~~~~~~~r~tlR~~g~~~~-~~~L~~lG---l~~~ 286 (467)
T 2axq_A 215 IETVSSEDLMATAKPYFIYPG-Y-AFVC--YPNRDSTLFKDLYHIPEAETVIRGTLRYQGFPEF-VKALVDMG---MLKD 286 (467)
T ss_dssp EEEECTTTHHHHCEECCSSTT-C-CEEE--EECSBCTHHHHHTTCTTCSEEEEEEEEETTHHHH-HHHHHHTT---TTCC
T ss_pred EEEecChhhhccccccccCCC-c-cEEE--ecCCCcchhhhhhCCCCcceeEEEEEEeCCHHHH-HHHHHHcC---CCCC
Confidence 99999999888887 564 3 4444 4445653333333443321 13333 3444443 56677776 3332
Q ss_pred chh---------hhhhhhhh---------------------------------------------------hhhhhhcc-
Q 022519 174 RSK---------VQQLVQLF---------------------------------------------------DPVVRAFD- 192 (296)
Q Consensus 174 ~~~---------~~~l~~~~---------------------------------------------------~~~~~~~~- 192 (296)
... .++++.+. +.+.+.+.
T Consensus 287 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~d~l~~~l~~ 366 (467)
T 2axq_A 287 DANEIFSKPIAWNEALKQYLGAKSTSKEDLIASIDSKATWKDDEDRERILSGFAWLGLFSDAKITPRGNALDTLCARLEE 366 (467)
T ss_dssp SBCGGGSSCCBHHHHHHHHHTCSSSSHHHHHHHHHTTCCCSCHHHHHHHHHHHHHTTTTSSCBCCCCSBHHHHHHHHHHH
T ss_pred CcccccCCCcCHHHHHHHhcCCCcccHHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCCCCccCCCCCHHHHHHHHHHH
Confidence 211 23333211 00111110
Q ss_pred -----ccCCceeEEEEEEE-e-cCCceEEE---Ee--ec----CCcccccHHHHHHHHHHHHcCC-CCCcccCC
Q 022519 193 -----GIAGERVSMRVDLE-C-TDGRNTVG---IF--SH----RRLSVSVGTAIAAFVLAVLEGA-TQPGVWFP 249 (296)
Q Consensus 193 -----~~~g~~~~m~v~v~-g-~~G~~~~~---~~--~~----~~~~~~Tg~~aa~~A~~ll~G~-~~~Gv~~P 249 (296)
.-..|...|+++++ + +||++... +. .. ..|+.+||+|++++|++|++|+ ..+||+.|
T Consensus 367 ~l~~~~~e~D~v~l~~~~~~~~~~g~~~~~~~~~~~y~~~~g~sama~tvG~p~ai~a~~i~~g~i~~~Gv~~P 440 (467)
T 2axq_A 367 LMQYEDNERDMVVLQHKFGIEWADGTTETRTSTLVDYGKVGGYSSMAATVGYPVAIATKFVLDGTIKGPGLLAP 440 (467)
T ss_dssp HSBCCTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHHHHHTTSSCCSEEECS
T ss_pred hhccCCCCCceEEEEEEEEEEecCCcEEEEEEEEEEecCCCCceEEehhhchhHHHHHHHHhCCccCCCcccCC
Confidence 11345577888888 6 79986622 11 12 2367899999999999999999 78999999
No 6
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}
Probab=99.24 E-value=1.5e-11 Score=119.68 Aligned_cols=226 Identities=13% Similarity=-0.026 Sum_probs=138.1
Q ss_pred cccchhhhhhhhhhhhhhcccccccCCccHHHHHHHHHHHHhccc---CCC---------------CCcEEEEeeeeeee
Q 022519 9 LDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNE---SKG---------------EPERLRYYVRFSYY 70 (296)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~g~~~~~~dPGlTn~lA~~aa~~l~~~---~l~---------------~ve~IdI~i~~~~~ 70 (296)
++|+++|...+.....-++...+.|++||++|.++++++..+-++ .++ +++.|+|+.| .-.
T Consensus 133 ~~Y~~~~~~~~~~~~~~GtAilg~G~nPGvvsvf~~~Al~~la~d~g~~~~~~~~~~~~~~l~~~lgVk~Ihiaer-Dtq 211 (480)
T 2ph5_A 133 TNYSLREEVLRLKDKTQKTALITHGANPGLVSHFIKEALLNIAKDNGLTINRPKNAAEWANLAMTLGIKVIHVAEQ-DSQ 211 (480)
T ss_dssp CHHHHHHHHHTTTTTCCSCEECSCBTTTBHHHHHHHHHHHHHHHTTTCCCCCCCSHHHHHHHHHHTTCCEEEEEEE-ECC
T ss_pred hhHHHHHHHHHHHHhcCCcEEecCCCCccHHHHHHHHHHHhHhhhcCCcccccccchhhhHHHhhcCceEEEEeee-ccc
Confidence 568888886555544223666777889999999999998765422 122 5788998761 000
Q ss_pred ecCCCCCC----hh-HHHHHHHHhCCcc---------------eEeeCC----eEEEecCCccceEEEcCCCcceeEEEE
Q 022519 71 TAGTGGAG----PT-ILATSFLLLGEEV---------------VAYNKG----EEITLEPYSGMLSVDFGKGIGRKDVFL 126 (296)
Q Consensus 71 ~~g~g~~G----~~-~~~t~l~~l~~p~---------------~v~~~G----r~~~v~~~s~~r~vdFp~~vG~r~~y~ 126 (296)
......-+ .+ +++.+++++..|. ..+++| .|.+.+|++-..+..+|. +|++.+|+
T Consensus 212 v~~~Pk~~~~F~~twS~eg~I~E~~~P~e~~wg~he~~~p~~~~~~~~G~~~~~~~t~~g~~t~~~t~~p~-~g~~~g~l 290 (480)
T 2ph5_A 212 VTYPPKSPGEFVNTWSANGLILEGLQPAEIGWGTHEAHWPHDAYSHSNGPQCAIYLSRPSAGVMVRSWTPT-LGAFHGFL 290 (480)
T ss_dssp EESSCCCTTEEEESSCHHHHHHHHHSEEEEECCTTCCCCCTTEECCSSSCTTEEEEEEEGGGCEEEECCTT-TCSEEEEC
T ss_pred ccccCCCCCeeecccchhhhHHHhcCchhhcccccccccCCcccccccCcceeEEEcCCCceeEEEEeCCC-ccceeEEE
Confidence 00000000 01 7788899999994 446678 599999996555555576 89999999
Q ss_pred ecCChhhhhhhhcCC-C--eEEEEeecC-----hHHHHHHHHHHHhhccccccccchhhhhhhhhhhhhhhhc-cc-cCC
Q 022519 127 LNLPEVRSAREVLGV-P--TVSARFGTA-----PFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAF-DG-IAG 196 (296)
Q Consensus 127 i~~pD~~Tlp~~~gi-~--~V~~r~g~~-----~~~~~~ll~~l~~lg~~~lL~~~~~~~~l~~~~~~~~~~~-~~-~~g 196 (296)
+.|.|..+++.++.+ + .+.+|+.+. .... +..+..+ .....+++++. +++ +. ..|
T Consensus 291 v~HeE~~si~~~~t~~~~g~~~yr~T~hY~yh~~~~~---~~sl~el-----~g~~~~~q~l~-------~il~~~i~~G 355 (480)
T 2ph5_A 291 ITHAETISLTNFLTLKNGSELLYRPTVHYAYNPCPDA---RLSIFEL-----KSNEWKPQNKN-------RLILNEIIDG 355 (480)
T ss_dssp CCCSHHHHHHHHTCEESSSSEEECCEEEEEEECCHHH---HHHHHHH-----HHTTTCCCSEE-------EECSTTEEEC
T ss_pred eecHHHhhhhhceeeccCCeeeeecchhhhcccHHHH---hhcchhh-----hCCCcChHHHh-------cccCCCCCCc
Confidence 999999999999985 3 799999883 2222 2222222 11111122222 233 22 344
Q ss_pred ceeEEEEEEEe-cCCceEEE----------EeecCCcccccHHHHHHHHHHHHcCC-CCCcccCCcCCC
Q 022519 197 ERVSMRVDLEC-TDGRNTVG----------IFSHRRLSVSVGTAIAAFVLAVLEGA-TQPGVWFPEEPE 253 (296)
Q Consensus 197 ~~~~m~v~v~g-~~G~~~~~----------~~~~~~~~~~Tg~~aa~~A~~ll~G~-~~~Gv~~PE~~~ 253 (296)
.+ .+.|...| ++|.-=+. +..+++...++..+++.++ ++..++ ...|+..||+++
T Consensus 356 ~d-~lGvll~G~~~g~~w~gs~l~~e~~r~l~p~~nAt~lqvaa~v~ag-~~w~~~~p~~G~v~~e~~~ 422 (480)
T 2ph5_A 356 CD-ELGVLLMGNQRGAYWYGSTLSIQEARQIAPYNNATSLQVVASMISG-IIWAIEHPDEGIVEPEEVD 422 (480)
T ss_dssp EE-EEEEEEECCTTCEEEEEEEEEHHHHHHHCSSCCHHHHHHHHHHHHH-HHHHHTSCCCCEECGGGSC
T ss_pred ce-eEEEEEEEEcCCcccccccccHHHHHhhcccCCceeehHHHHHHHH-HHHccccccCCCcccccCC
Confidence 44 57777775 45521111 2233444444444444444 666777 889999999996
No 7
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=14.05 E-value=89 Score=17.68 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=10.6
Q ss_pred cceEeeCCeEEEec
Q 022519 92 EVVAYNKGEEITLE 105 (296)
Q Consensus 92 p~~v~~~Gr~~~v~ 105 (296)
..-|++||.|+...
T Consensus 11 ~~Yvr~dg~WV~l~ 24 (27)
T 2ww6_A 11 QAYVRKFGEWVLLS 24 (27)
T ss_dssp CEEEEETTEEEEGG
T ss_pred ceeEEEcCeEEEcc
Confidence 34678999998764
No 8
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=12.02 E-value=2.7e+02 Score=20.58 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=25.3
Q ss_pred cceEeeCCeEEEecCCc---cceEEEcCCCcceeEEEEec
Q 022519 92 EVVAYNKGEEITLEPYS---GMLSVDFGKGIGRKDVFLLN 128 (296)
Q Consensus 92 p~~v~~~Gr~~~v~~~s---~~r~vdFp~~vG~r~~y~i~ 128 (296)
-..++.||+....-+++ ..+.+++..+.|......+.
T Consensus 9 ~avI~vdGk~~~~i~L~~~~~~~~~~i~~~~G~~n~ieI~ 48 (101)
T 3ld7_A 9 VAIISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVD 48 (101)
T ss_dssp EEEEEETTEEEEEEECTTCBSEEEEEEECSTTCEEEEEEE
T ss_pred EEEEEECCEEEEEEECCCCCCCEEEEEEcCCCCEEEEEEE
Confidence 35788999999988887 66788886434533333433
No 9
>2lq1_A De novo designed antifreeze peptide 3; AFP, antifreeze protein; NMR {Synthetic}
Probab=11.43 E-value=59 Score=17.76 Aligned_cols=14 Identities=7% Similarity=-0.128 Sum_probs=10.1
Q ss_pred ccCCccHHHHHHHH
Q 022519 32 ILTDICYMTVMAAE 45 (296)
Q Consensus 32 ~~~dPGlTn~lA~~ 45 (296)
+|.+||+|..+...
T Consensus 4 vglspglstaltgf 17 (26)
T 2lq1_A 4 VGLSPGLSTALTGF 17 (26)
T ss_dssp TSSHHHHHHHHHHT
T ss_pred cccCccceehcccc
Confidence 46789998877654
No 10
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=10.32 E-value=12 Score=24.07 Aligned_cols=18 Identities=39% Similarity=0.707 Sum_probs=11.6
Q ss_pred CCceeecCceeecceecC
Q 022519 279 APWMVETEPKELGLGIYI 296 (296)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~ 296 (296)
.|--+++.-..+|+||||
T Consensus 21 ~psll~shiL~~GlgIyI 38 (45)
T 2j5d_A 21 LPSLLLSHLLAIGLGIYI 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcceEEe
Confidence 344456666677888874
Done!