BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022521
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 117/282 (41%), Gaps = 22/282 (7%)
Query: 17 CTVDIDDQTTIHFFTPNHRKFKKPNLVIIHGYG-GTSRW-QFVHQVRPLSNRFNLYVPDL 74
VD+D +H+ +V++HG G G + W F + L+ F++ D
Sbjct: 36 AEVDVDGPLKLHYHEAG--VGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQ 93
Query: 75 IFFGKSYSAGADRTEVFQ----AKCLVEGL-KRLGVGRFSVYGISYGGIVAYHMAEMNPL 129
+G S R E Q A ++GL +LG+GR + G S GG A A P
Sbjct: 94 PGYGHS----DKRAEHGQFNRYAAMALKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPA 149
Query: 130 EIDKVVIVSSAIGYTEEQKERQLTRIGRRISGFLVPESPQDLRFLVSLSMYRNDFLKWVP 189
++V++ G + T +R+S F V + ++L + + +Y + + P
Sbjct: 150 RAGRLVLMGPG-GLSINLFAPDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLI--TP 206
Query: 190 DFFFRQFINAMYKTHRKERLEMIEHLLTKDADPN-----VPILTQETLIIWGDQDKVFPL 244
+ ++F A M + D + V L Q L+IWG +D+V PL
Sbjct: 207 ELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPL 266
Query: 245 EFAHQLHRHLGSKSKLVILKNTGHAVNMESPCELNILIKTFV 286
+ A + + +++L + GH V +E E N L F+
Sbjct: 267 DGALVALKTI-PRAQLHVFGQCGHWVQVEKFDEFNKLTIEFL 307
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 22/282 (7%)
Query: 17 CTVDIDDQTTIHFFTPNHRKFKKPNLVIIHGYG-GTSRW-QFVHQVRPLSNRFNLYVPDL 74
VD+D +H+ +V++HG G G + W F + L+ F++ D
Sbjct: 16 AEVDVDGPLKLHYHEAG--VGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQ 73
Query: 75 IFFGKSYSAGADRTEVFQ----AKCLVEGL-KRLGVGRFSVYGISYGGIVAYHMAEMNPL 129
+G S R E Q A ++GL +LG+GR + G + GG A A P
Sbjct: 74 PGYGHSDK----RAEHGQFNRYAAMALKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPA 129
Query: 130 EIDKVVIVSSAIGYTEEQKERQLTRIGRRISGFLVPESPQDLRFLVSLSMYRNDFLKWVP 189
++V++ G + T +R+S F V + ++L + + +Y + + P
Sbjct: 130 RAGRLVLMGPG-GLSINLFAPDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLI--TP 186
Query: 190 DFFFRQFINAMYKTHRKERLEMIEHLLTKDADPN-----VPILTQETLIIWGDQDKVFPL 244
+ ++F A M + D + V L Q L+IWG +D+V PL
Sbjct: 187 ELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPL 246
Query: 245 EFAHQLHRHLGSKSKLVILKNTGHAVNMESPCELNILIKTFV 286
+ A + + +++L + GH V +E E N L F+
Sbjct: 247 DGALVALKTI-PRAQLHVFGQCGHWVQVEKFDEFNKLTIEFL 287
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 111/258 (43%), Gaps = 19/258 (7%)
Query: 42 LVIIHGYG-GTSRW-QFVHQVRPL-SNRFNLYVPDLIFFGKSYSA--GADRTEVFQAKCL 96
+V++HG G G + W F + PL + + + D +GKS S R+++ A+ L
Sbjct: 39 VVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSGSRSDL-NARIL 97
Query: 97 VEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQKERQLTRIG 156
+ +L + + + G S GG + P + K+V++ G I
Sbjct: 98 KSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGI- 156
Query: 157 RRISGFLVPESPQDLRFLVSLSMYRNDFLKWVPDFFFRQFINAMYKTHRKERLEMIEHLL 216
+R++ + ++L+ ++ + ++ L D F +N M R++ LE L
Sbjct: 157 KRLNQLYRQPTIENLKLMMDIFVFDTSDLT---DALFEARLNNMLS--RRDHLENFVKSL 211
Query: 217 TK------DADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAV 270
D P + + +TLI+WG D+ P++ +L + + S+L I ++ GH
Sbjct: 212 EANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGI-AGSELHIFRDCGHWA 270
Query: 271 NMESPCELNILIKTFVFR 288
E N L+ F+ R
Sbjct: 271 QWEHADAFNQLVLNFLAR 288
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 22/250 (8%)
Query: 38 KKPNLVIIHGYG----GTSRWQFVHQVRPLSNRFNLYVPDLIFFGKS-----YSAGADRT 88
+ P +V++HG G S W+ + + L+ F + PDLI FG+S Y
Sbjct: 28 QSPAVVLLHGAGPGAHAASNWRPI--IPDLAENFFVVAPDLIGFGQSEYPETYPGHIMSW 85
Query: 89 EVFQAKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQK 148
+ + ++ + G+ + + G S GG V + P DKV ++ S +G +
Sbjct: 86 VGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGS-VGAPMNAR 144
Query: 149 ERQLTRIGRRISGFLVPESPQDLRFLVSLSMYRNDFLKWVPDFFFRQFINAMYKTHRKER 208
+L R+ F R L+ +Y + + + +F A R+ +
Sbjct: 145 PPELARL----LAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQ 200
Query: 209 LEMIEHLLTKDADPNVPILT-----QETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVIL 263
M E + +P T + L+ G QD++ PL+ + L +HL ++LV+L
Sbjct: 201 EVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDRIVPLDTSLYLTKHL-KHAELVVL 259
Query: 264 KNTGHAVNME 273
GH +E
Sbjct: 260 DRCGHWAQLE 269
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 23 DQTTIHFFTPNHR---KFKKPNLVIIHGYGGTS-RWQFVHQVRP-LSNRFNLYVPDLIFF 77
D T+H R K P L+++HGY T W H++ P L+ +++ + DL +
Sbjct: 12 DYLTLHTSAARLRVAVKGSGPPLLLLHGYPQTHLAW---HRIAPRLAEDYSVVLADLRGY 68
Query: 78 GKSYS---AGADRTEVFQAKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKV 134
G+S + GAD ++ A+ +E + +LG RF+V G G V Y +A +P +
Sbjct: 69 GESRALDEEGADYSKAALARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAF 128
Query: 135 VIVS 138
V ++
Sbjct: 129 VSLT 132
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 40 PNLVIIHGYGGTSRWQFVHQVRP-LSNRFNLYVPDLIFFGKSYSAGADR-----TEVFQA 93
P L+++HG+ T H+V P L+ RF + V DL +G S +D T+ A
Sbjct: 34 PPLLLLHGFPQTH--VMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 94 KCLVEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIV 137
K L+E +++LG F++ G + G V+Y +A +P + K+ ++
Sbjct: 92 KQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVL 135
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 40 PNLVIIHGYGGTSRWQFVHQVRP-LSNRFNLYVPDLIFFGKSYSAGADR-----TEVFQA 93
P L+++HG+ T H+V P L+ RF + V DL +G S +D T+ A
Sbjct: 34 PPLLLLHGFPQTH--VMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 94 KCLVEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIV 137
K L+E +++LG F++ G G V+Y +A +P + K+ ++
Sbjct: 92 KQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVL 135
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 40 PNLVIIHGYGGTSRWQFVHQVRP-LSNRFNLYVPDLIFFGKSYSAGADR-----TEVFQA 93
P L+++HG+ T H+V P L+ RF + V DL +G S +D T+ A
Sbjct: 34 PPLLLLHGFPQTH--VMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 94 KCLVEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIV 137
K L+E +++LG F++ G G V+Y +A +P + K+ ++
Sbjct: 92 KQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVL 135
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 40 PNLVIIHGYGGTSRWQFVHQVRP-LSNRFNLYVPDLIFFGKSYSAGADR-----TEVFQA 93
P L+++HG+ T H+V P L+ RF + V DL +G S +D T+ A
Sbjct: 34 PPLLLLHGFPQTH--VMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 94 KCLVEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIV 137
K L+E +++LG F++ G G V+Y +A +P + K+ ++
Sbjct: 92 KQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVL 135
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 50/268 (18%)
Query: 42 LVIIHGYG----GTSRWQFVHQVRPLSNRFNLYVPDLIFFGKSYSAGADRTEVFQ----- 92
+++IHG G + W+ + LS + + PD++ FG + DR E +
Sbjct: 28 VILIHGSGPGVSAYANWRLT--IPALSKFYRVIAPDMVGFGFT-----DRPENYNYSKDS 80
Query: 93 -AKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSA----------- 140
++ + L + + + G ++GG +A A +D++V++ +A
Sbjct: 81 WVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLN 140
Query: 141 --IGYTEE-QKERQLTRIGRRISGFLVPESPQDLRFLVSLSMYRNDFLKWVPDFFFRQFI 197
GYT + R L I LV + LR+ S+ P F ++
Sbjct: 141 AVWGYTPSIENMRNLLDI-FAYDRSLVTDELARLRYEASIQ----------PGF--QESF 187
Query: 198 NAMYKTHRKERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSK 257
++M+ R+ I+ L + D D + L ETLII G +D+V PL + +L L +
Sbjct: 188 SSMFPEPRQR---WIDALASSDED--IKTLPNETLIIHGREDQVVPLSSSLRLG-ELIDR 241
Query: 258 SKLVILKNTGHAVNMESPCELNILIKTF 285
++L + GH +E N L+ F
Sbjct: 242 AQLHVFGRCGHWTQIEQTDRFNRLVVEF 269
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 113/263 (42%), Gaps = 40/263 (15%)
Query: 42 LVIIHGYG----GTSRWQFVHQVRPLSNRFNLYVPDLIFFGKSYSAGADRTEVFQ----- 92
+++IHG G + W+ + LS + + PD++ FG + DR E +
Sbjct: 28 VILIHGSGPGVSAYANWRLT--IPALSKFYRVIAPDMVGFGFT-----DRPENYNYSKDS 80
Query: 93 -AKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQKERQ 151
++ + L + + + G S+GG +A A +D++V++ A+G + E
Sbjct: 81 WVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMG-AVGTRFDVTE-- 137
Query: 152 LTRIGRRISGFLVPESPQDLRFLVSLSMYRNDF-------LKWVPDF--FFRQFINAMYK 202
G P S +++R L+ + Y L++ F++ ++M+
Sbjct: 138 ----GLNAVWGYTP-SIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFP 192
Query: 203 THRKERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVI 262
R+ I+ L + D D + L ETLII G +D+V PL + +L L +++L +
Sbjct: 193 EPRQR---WIDALASSDED--IKTLPNETLIIHGREDQVVPLSSSLRLG-ELIDRAQLHV 246
Query: 263 LKNTGHAVNMESPCELNILIKTF 285
GH +E N L+ F
Sbjct: 247 FGRCGHWTQIEQTDRFNRLVVEF 269
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 101/249 (40%), Gaps = 25/249 (10%)
Query: 42 LVIIHGYGGTSRWQFVHQVRPLSNR-FNLYVPDLIFFGKSYSAGADRTEVF---QAKCLV 97
++++ G G+ F Q++ L+ + F + D +G S D F AK V
Sbjct: 26 VLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAV 85
Query: 98 EGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQKERQLTRIGR 157
+ +K L + S+ G S GGI A A P I K+VI + T+E + G
Sbjct: 86 DLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGANAYVTDED---SMIYEGI 142
Query: 158 RISGFLVPESPQDLRFLVSLSMYRNDFLKWVPDFFFRQFINAMYKTHRKERLEMIEHLLT 217
R + + L L + KWV RQF H + + HLL
Sbjct: 143 RDVSKWSERTRKPLEALYGYDYFARTCEKWVDG--IRQF------KHLPDG-NICRHLL- 192
Query: 218 KDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVNMESPCE 277
P + LI+ G++D + P A +H+H+ S+L ++ H +++ E
Sbjct: 193 -------PRVQCPALIVHGEKDPLVPRFHADFIHKHV-KGSRLHLMPEGKHNLHLRFADE 244
Query: 278 LNILIKTFV 286
N L + F+
Sbjct: 245 FNKLAEDFL 253
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 101/249 (40%), Gaps = 25/249 (10%)
Query: 42 LVIIHGYGGTSRWQFVHQVRPLSNR-FNLYVPDLIFFGKSYSAGADRTEVF---QAKCLV 97
++++ G G+ F Q++ L+ + F + D +G S D F AK V
Sbjct: 26 VLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAV 85
Query: 98 EGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQKERQLTRIGR 157
+ +K L + S+ G S GGI A A P I K+VI + T+E + G
Sbjct: 86 DLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDED---SMIYEGI 142
Query: 158 RISGFLVPESPQDLRFLVSLSMYRNDFLKWVPDFFFRQFINAMYKTHRKERLEMIEHLLT 217
R + + L L + KWV RQF H + + HLL
Sbjct: 143 RDVSKWSERTRKPLEALYGYDYFARTCEKWVDG--IRQF------KHLPDG-NICRHLL- 192
Query: 218 KDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVNMESPCE 277
P + LI+ G++D + P A +H+H+ S+L ++ H +++ E
Sbjct: 193 -------PRVQCPALIVHGEKDPLVPRFHADFIHKHV-KGSRLHLMPEGKHNLHLRFADE 244
Query: 278 LNILIKTFV 286
N L + F+
Sbjct: 245 FNKLAEDFL 253
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 227 LTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVNMESPCEL 278
+ Q+TL++WG +D V P+ + + + + S S+L I++ +GH V +E P E
Sbjct: 146 IRQKTLLVWGSKDHVVPIALSKE-YASIISGSRLEIVEGSGHPVYIEKPEEF 196
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 41 NLVIIHGYGGTSR-WQFVHQVRPLSN-RFNLYVPDLIFFGKSYSA---GADRTEVFQAKC 95
++ + HGY TS W S +N+Y PD FG+S S+ G DR ++ A
Sbjct: 29 SIALFHGYSFTSXDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDRGDLKHAAE 88
Query: 96 LVEG-LKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSA 140
+ LK GV R + G S GG P +D ++ V+ A
Sbjct: 89 FIRDYLKANGVARSVIXGASXGGGXVIXTTLQYPDIVDGIIAVAPA 134
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/309 (19%), Positives = 114/309 (36%), Gaps = 64/309 (20%)
Query: 22 DDQTTIHFFTPNHRKFKKPNLVIIHGYGGTSRWQFVHQVRPLSNRFNLYVP--DLIFFGK 79
D +T + TP + + L+++HG G + +V + L++ V D + G
Sbjct: 37 DHETWVQVTTPENAQPHALPLIVLHGGPGMAH-NYVANIAALADETGRTVIHYDQVGCGN 95
Query: 80 SY---SAGADR------TEVFQAKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLE 130
S A AD + F A C LG+ R+ V G S+GG++ +A P
Sbjct: 96 STHLPDAPADFWTPQLFVDEFHAVCTA-----LGIERYHVLGQSWGGMLGAEIAVRQPSG 150
Query: 131 IDKVVIVSSAIGYTEEQKERQLTRIGRRISGFLVPESPQDLRFLV-----SLSMYRNDFL 185
+ + I +S R+ +G L + P + R + + ++ D+L
Sbjct: 151 LVSLAICNSPASM----------RLWSEAAGDLRAQLPAETRAALDRHEAAGTITHPDYL 200
Query: 186 KWVPDFFFRQFINAMYKTHRKERLEMIEHLLTKDADPNV--------------------- 224
+ +F+ R + + + + +A+P V
Sbjct: 201 QAAAEFYRRHVCRVVPTPQ-----DFADSVAQMEAEPTVYHTMNGPNEFHVVGTLGDWSV 255
Query: 225 ----PILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVNMESPCELNI 280
P +T L+I G+ D+ P + + +S + T H ++E P E
Sbjct: 256 IDRLPDVTAPVLVIAGEHDEATPKTWQPFVDHIPDVRSH--VFPGTSHCTHLEKPEEFRA 313
Query: 281 LIKTFVFRH 289
++ F+ +H
Sbjct: 314 VVAQFLHQH 322
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 101/249 (40%), Gaps = 25/249 (10%)
Query: 42 LVIIHGYGGTSRWQFVHQVRPLSNR-FNLYVPDLIFFGKSYSAGADRTEVF---QAKCLV 97
++++ G G+ F Q++ L+ + F + D +G S D F AK V
Sbjct: 26 VLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAV 85
Query: 98 EGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQKERQLTRIGR 157
+ +K L + S+ G + GGI A A P I K+VI + T+E + G
Sbjct: 86 DLMKALKFKKVSLLGWADGGITALIAAAKYPSYIHKMVIWGANAYVTDED---SMIYEGI 142
Query: 158 RISGFLVPESPQDLRFLVSLSMYRNDFLKWVPDFFFRQFINAMYKTHRKERLEMIEHLLT 217
R + + L L + KWV RQF H + + HLL
Sbjct: 143 RDVSKWSERTRKPLEALYGYDYFARTCEKWVDG--IRQF------KHLPDG-NICRHLL- 192
Query: 218 KDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVNMESPCE 277
P + LI+ G++D + P A +H+H+ S+L ++ H +++ E
Sbjct: 193 -------PRVQCPALIVHGEKDPLVPRFHADFIHKHV-KGSRLHLMPEGKHNLHLRFADE 244
Query: 278 LNILIKTFV 286
N L + F+
Sbjct: 245 FNKLAEDFL 253
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 104/256 (40%), Gaps = 27/256 (10%)
Query: 42 LVIIHGYGGTSRWQFVHQVR-PLSNRFNLYVPDLIFFGKSYSA-GADRTEVFQ--AKCLV 97
L++IHG +S F Q+ + ++ + PDL GKS A DR+ + A +
Sbjct: 27 LLMIHGNS-SSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMT 85
Query: 98 EGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQKERQLTRIGR 157
E +++LG+ V+G S GG + M P E+ ++I + EE +G+
Sbjct: 86 EVMQQLGIADAVVFGWSLGGHIGIEMIARYP-EMRGLMITGTPPVAREE--------VGQ 136
Query: 158 RISGFLVPESPQDLRFLVSLSMYRNDFLKWV----PDFFFRQFINAMYKTHRKERLEMIE 213
GF +S D+ D + + F ++ + +T + R M E
Sbjct: 137 ---GF---KSGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFE 190
Query: 214 HLLTKDADPNVPILTQETL---IIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAV 270
+ I+ + L ++ G + L+F ++ + K ++ N GHA
Sbjct: 191 KFGSGTGGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLWEGKTHVIDNAGHAP 250
Query: 271 NMESPCELNILIKTFV 286
E+P E + + F+
Sbjct: 251 FREAPAEFDAYLARFI 266
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 106/286 (37%), Gaps = 45/286 (15%)
Query: 18 TVDIDDQTTIHFFTPNHRKFKKPNLVIIHGYGGTSR-WQFVHQVRPL-SNRFNLYVPDLI 75
TV ++Q I + +H K +V+IHG+ + R W++ QV L + + D
Sbjct: 8 TVGTENQAPIEIYYEDHGTGKP--VVLIHGWPLSGRSWEY--QVPALVEAGYRVITYDRR 63
Query: 76 FFGKSYSAGAD-RTEVFQAKCLVEGLKRLGVGRFSVYGISYGGI-VAYHMAEMNPLEIDK 133
FGKS + F + + ++ G S GG VA +++ I+K
Sbjct: 64 GFGKSSQPWEGYEYDTFTSDLHQLLEQLELQ-NVTLVGFSXGGGEVARYISTYGTDRIEK 122
Query: 134 VVIVSSAIGY---TEEQKERQLTR----------IGRRIS-------GFLVPESPQDLRF 173
VV + Y +E+ E L I R++ GF DL
Sbjct: 123 VVFAGAVPPYLYKSEDHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAAGDRTDL-V 181
Query: 174 LVSLSMYRNDFLKWVPDFFFRQFINAMYKTHRKERLEMIEHLLTKDADPNVPILTQETLI 233
S +Y D I A KT ++ LE N+P TLI
Sbjct: 182 SESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKF----------NIP-----TLI 226
Query: 234 IWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVNMESPCELN 279
I GD D P E++ +L SK+ ++K H +N E N
Sbjct: 227 IHGDSDATVPFEYSGKLTHEAIPNSKVALIKGGPHGLNATHAKEFN 272
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 35 RKFKKPNLVIIHGYGGTSRWQFVHQVRPLSNRFNLYVPDLIFFGKSYSAGADRTEVFQAK 94
R+ P L+++HG+ G W++ + PL+ +++ VPDL FG S + +
Sbjct: 25 REGAGPTLLLLHGWPGF-WWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSKYSLD 83
Query: 95 CLVEG----LKRLGVGRFSVYGISYGGIV 119
+ L LG+ + V G + IV
Sbjct: 84 KAADDQAALLDALGIEKAYVVGHDFAAIV 112
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 103/256 (40%), Gaps = 27/256 (10%)
Query: 42 LVIIHGYGGTSRWQFVHQVR-PLSNRFNLYVPDLIFFGKSYSA-GADRTEVFQ--AKCLV 97
L++IHG +S F Q+ + ++ + PDL GKS A DR+ + A +
Sbjct: 27 LLMIHGNS-SSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMT 85
Query: 98 EGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQKERQLTRIGR 157
E +++LG+ V+G S GG + M P E+ ++I + EE +G+
Sbjct: 86 EVMQQLGIADAVVFGWSLGGHIGIEMIARYP-EMRGLMITGTPPVAREE--------VGQ 136
Query: 158 RISGFLVPESPQDLRFLVSLSMYRNDFLKWV----PDFFFRQFINAMYKTHRKERLEMIE 213
GF +S D+ D + + F ++ + +T + R M E
Sbjct: 137 ---GF---KSGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFE 190
Query: 214 HLLTKDADPNVPILTQETL---IIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAV 270
+ I+ + L ++ G L+F ++ + K ++ N GHA
Sbjct: 191 KFGSGTGGNQRDIVAEAQLPIAVVNGRDGPFVELDFVSKVKFGNLWEGKTHVIDNAGHAP 250
Query: 271 NMESPCELNILIKTFV 286
E+P E + + F+
Sbjct: 251 FREAPAEFDAYLARFI 266
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 103/256 (40%), Gaps = 27/256 (10%)
Query: 42 LVIIHGYGGTSRWQFVHQVR-PLSNRFNLYVPDLIFFGKSYSA-GADRTEVFQ--AKCLV 97
L++IHG +S F Q+ + ++ + PDL GKS A DR+ + A +
Sbjct: 27 LLMIHGNS-SSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMT 85
Query: 98 EGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQKERQLTRIGR 157
E +++LG+ V+G GG + M P E+ ++I + EE +G+
Sbjct: 86 EVMQQLGIADAVVFGWGLGGHIGIEMIARYP-EMRGLMITGTPPVAREE--------VGQ 136
Query: 158 RISGFLVPESPQDLRFLVSLSMYRNDFLKWV----PDFFFRQFINAMYKTHRKERLEMIE 213
GF +S D+ D + + F ++ + +T + R M E
Sbjct: 137 ---GF---KSGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFE 190
Query: 214 HLLTKDADPNVPILTQETL---IIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAV 270
+ I+ + L ++ G + L+F ++ + K ++ N GHA
Sbjct: 191 KFGSGTGGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLWEGKTHVIDNAGHAP 250
Query: 271 NMESPCELNILIKTFV 286
E+P E + + F+
Sbjct: 251 FREAPAEFDAYLARFI 266
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 100 LKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVS 138
L+RLGV R SV G S GG +A A + P +++++V+V+
Sbjct: 108 LERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVN 146
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 206 KERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKN 265
K ++ + D P++ + TL+I GD D++ P E ++ L ++L + K+
Sbjct: 189 KATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKD 248
Query: 266 TGHAVNMESPCELNILIKTFVFRHS 290
H + +LN + F+ R S
Sbjct: 249 APHGFAVTHAQQLNEDLLAFLKRGS 273
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 38/229 (16%)
Query: 63 LSNRFNLYVPDLIFFGKSYSAGADRTEVFQAKCLVEGLKRLGV-GRFSVYGISYGGIVAY 121
L+ + + D++ FGK+ + T+ + + L + +K + G+ S+ G S GG
Sbjct: 62 LARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVGNSMGGATGL 121
Query: 122 HMAEMNPLEIDKVVIVSSAIGYTEEQKERQLTRIGRRISGFLVPESPQDLRFLVSLSMYR 181
++ ++ ++ +V++ SA LV E +DLR +++ R
Sbjct: 122 GVSVLHSELVNALVLMGSA---------------------GLVVEIHEDLRPIINYDFTR 160
Query: 182 -----------NDFLKWVPDFFFRQFINAMYKTHRKERLEMIEHLLTKDA---DPN-VPI 226
ND K ++ A + RK + ++ + + DP +
Sbjct: 161 EGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRK 220
Query: 227 LTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVNMESP 275
+ TL++ G DKV P+E A++ L S I+ + GH +E P
Sbjct: 221 VQVPTLVVQGKDDKVVPVETAYKF-LDLIDDSWGYIIPHCGHWAMIEHP 268
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 206 KERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKN 265
K ++ + D P++ + TL+I GD D++ P E ++ L ++L + K+
Sbjct: 189 KATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKD 248
Query: 266 TGHAVNMESPCELNILIKTFVFR 288
H + +LN + F+ R
Sbjct: 249 APHGFAVTHAQQLNEDLLAFLKR 271
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 206 KERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKN 265
K ++ + D P++ + TL+I GD D++ P E ++ L ++L + K+
Sbjct: 189 KATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKD 248
Query: 266 TGHAVNMESPCELNILIKTFVFR 288
H + +LN + F+ R
Sbjct: 249 APHGFAVTHAQQLNEDLLAFLKR 271
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 206 KERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKN 265
K ++ + D P++ + TL+I GD D++ P E ++ L ++L + K+
Sbjct: 189 KATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKD 248
Query: 266 TGHAVNMESPCELNILIKTFVFR 288
H + +LN + F+ R
Sbjct: 249 APHGFAVTHAQQLNEDLLAFLKR 271
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 206 KERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKN 265
K ++ + D P++ + TL+I GD D++ P E ++ L ++L + K+
Sbjct: 189 KATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKD 248
Query: 266 TGHAVNMESPCELNILIKTFVFR 288
H + +LN + F+ R
Sbjct: 249 APHGFAVTHAQQLNEDLLAFLKR 271
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 34/85 (40%)
Query: 194 RQFINAMYKTHRKERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRH 253
R+F ++ L + + D + ++ T +I +D P A L H
Sbjct: 173 REFSRTLFNMRPDISLFVSRTVFNSDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSH 232
Query: 254 LGSKSKLVILKNTGHAVNMESPCEL 278
LG + + LK GH + +P +L
Sbjct: 233 LGGDTTVETLKTEGHLPQLSAPAQL 257
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 215 LLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVNMES 274
L T D + + +T I WG D+ PL+ +L ++ ++L + GH E
Sbjct: 210 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGHWAQWEH 268
Query: 275 PCELNILIKTFVFRHS 290
E N L+ F+ RH+
Sbjct: 269 ADEFNRLVIDFL-RHA 283
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 215 LLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVNMES 274
L T D + + +T I WG D+ PL+ +L ++ ++L + GH E
Sbjct: 213 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGHWAQWEH 271
Query: 275 PCELNILIKTFVFRHS 290
E N L+ F+ RH+
Sbjct: 272 ADEFNRLVIDFL-RHA 286
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 215 LLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVNMES 274
L T D + + +T I WG D+ PL+ +L ++ ++L + GH E
Sbjct: 213 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGHWAQWEH 271
Query: 275 PCELNILIKTFVFRHS 290
E N L+ F+ RH+
Sbjct: 272 ADEFNRLVIDFL-RHA 286
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 4 MLLLYFHLCNLSPCTVDIDDQTTIHFFTPNHRKFKKPNLVIIHGYGGTSRWQFVHQVRPL 63
M LY + ++ +DD+ T+ +F KP +++ G GG + P
Sbjct: 1 MRTLYPEITPYQQGSLKVDDRHTL-YFEQCGNPHGKPVVMLHGGPGGGCNDKMRRFHDPA 59
Query: 64 SNRFNLYVPDLIFFGKSYSAGADRTE--VFQAKCLVEGLK-RLGVGRFSVYGISYGGIVA 120
R L+ D G+S + AD + + +E L+ LGV R+ V+G S+G +A
Sbjct: 60 KYRIVLF--DQRGSGRS-TPHADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLA 116
Query: 121 YHMAEMNPLEIDKVVI 136
A+ +P ++ ++V+
Sbjct: 117 LAYAQTHPQQVTELVL 132
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 11/198 (5%)
Query: 93 AKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSA-IGYTEEQKERQ 151
A+ LV+ L L + + + G S GG + + P IDK+V + A + Y + +
Sbjct: 68 AQDLVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEI 127
Query: 152 LTRIGRRISGFLVPESPQDLRFLVSLSMYRNDFLKWVPDFFFRQFINAMYKTHRKERLEM 211
I V ES R + M ++ + V F + F++ ++ + +
Sbjct: 128 FAAIN------AVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQ 181
Query: 212 IEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVN 271
H++ + +P L I G ++ L +++ ++ GH V+
Sbjct: 182 YPHIVGWE---KIPAWDHPALFIPGGNSPYVSEQYRDDLLAQF-PQARAHVIAGAGHWVH 237
Query: 272 MESPCELNILIKTFVFRH 289
E P + I+ ++ H
Sbjct: 238 AEKPDAVLRAIRRYLNDH 255
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 37/82 (45%)
Query: 194 RQFINAMYKTHRKERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRH 253
++F ++ L + + + D +P +T I+ +D P+ + LH +
Sbjct: 172 QEFSRTLFNMRPDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHAN 231
Query: 254 LGSKSKLVILKNTGHAVNMESP 275
LG +S + ++ + GH + SP
Sbjct: 232 LGCESVVEVIPSDGHLPQLSSP 253
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 37/82 (45%)
Query: 194 RQFINAMYKTHRKERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRH 253
++F ++ L + + + D +P +T I+ +D P+ + LH +
Sbjct: 174 QEFSRTLFNMRPDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHAN 233
Query: 254 LGSKSKLVILKNTGHAVNMESP 275
LG +S + ++ + GH + SP
Sbjct: 234 LGCESVVEVIPSDGHLPQLSSP 255
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 37/82 (45%)
Query: 194 RQFINAMYKTHRKERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRH 253
++F ++ L + + + D +P +T I+ +D P+ + LH +
Sbjct: 190 QEFSRTLFNMRPDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHAN 249
Query: 254 LGSKSKLVILKNTGHAVNMESP 275
LG +S + ++ + GH + SP
Sbjct: 250 LGCESVVEVIPSDGHLPQLSSP 271
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 231 TLIIWGDQDKVFPLEFAH--QLHRHLGSKSKLVILKNTGHAVNMESPCELNILIKTFV 286
LI++GDQD + F H QL H +++I+K GH ++ P E + + F+
Sbjct: 154 ALIVYGDQDPMGQTSFEHLKQLPNH-----RVLIMKGAGHPCYLDKPEEWHTGLLDFL 206
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 187 WVPDFFFRQFINAMYKTHRK-ERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLE 245
W+ F F +I+A +K +L + + + ++ + LI+ GDQD+V P E
Sbjct: 108 WLAGFSFGAYISAKVAYDQKVAQLISVAPPVFYEGFASLTQMASPWLIVQGDQDEVVPFE 167
Query: 246 FAHQLHRHLGSKSKLVILKNTGH 268
+ S + V++ H
Sbjct: 168 QVKAFVNQISSPVEFVVMSGASH 190
>pdb|3MFA|A Chain A, Computationally Designed Endo-1,4-Beta-Xylanase
Length = 194
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 74 LIFFGKSYSAGADRTEVFQAKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAE 125
L GK +S G RT + A G RL ++YG + G +V+YH+ E
Sbjct: 48 LFVAGKGWSTGGRRTVTYNASFNPSGNARL-----TLYGWTRGPLVSYHIVE 94
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 50 GTSRWQFVH-QVRPL--SNRFNLYVPDLIFFGKSYSAGADR--TEVFQAKCLVEGLKRLG 104
G W F++ ++ P+ + + PDL FG+S D T F + L+ L L
Sbjct: 54 GEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDAVYTFGFHRRSLLAFLDALQ 113
Query: 105 VGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSAI 141
+ R ++ +GGI+ + P +D+++++++A+
Sbjct: 114 LERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTAL 150
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 30 FTPNHRKFKKPNLVIIHGYGGTSRWQFVHQVRPLSNRFNLYVPDLIFFGKSYSAGADRTE 89
+ N R P ++++ G+ R + + ++ L F + VP+ G S S D
Sbjct: 18 YIDNQRDTDGPAILLLPGWCHDHR-VYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGY 76
Query: 90 VFQAKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAE 125
Q K +E L +LGV F S+GG V + E
Sbjct: 77 QEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLE 112
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 190 DFFFRQFINAMYKTHRKERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQ 249
D+F+ Q + A +K + I+ D ++ + TL++ GD D+V P+E +
Sbjct: 179 DWFWLQGMAAGHKN----AYDCIKAFSETDFTEDLKKIDVPTLVVHGDADQVVPIEASGI 234
Query: 250 LHRHLGSKSKLVILKNTGHAVNMESPCELNILIKTFV 286
L S L I H + +LN + F+
Sbjct: 235 ASAALVKGSTLKIYSGAPHGLTDTHKDQLNADLLAFI 271
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/96 (16%), Positives = 42/96 (43%)
Query: 194 RQFINAMYKTHRKERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRH 253
++F ++ L + + + D + ++ +++ +D P A L H
Sbjct: 171 QEFSRTLFNMRPDISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAH 230
Query: 254 LGSKSKLVILKNTGHAVNMESPCELNILIKTFVFRH 289
LG ++ + L+ GH ++ +P L +++ + R+
Sbjct: 231 LGGRTTVEFLQTEGHLPHLSAPSLLAQVLRRALARY 266
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/96 (16%), Positives = 42/96 (43%)
Query: 194 RQFINAMYKTHRKERLEMIEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRH 253
++F ++ L + + + D + ++ +++ +D P A L H
Sbjct: 173 QEFSRTLFNMRPDISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAH 232
Query: 254 LGSKSKLVILKNTGHAVNMESPCELNILIKTFVFRH 289
LG ++ + L+ GH ++ +P L +++ + R+
Sbjct: 233 LGGRTTVEFLQTEGHLPHLSAPSLLAQVLRRALARY 268
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 30 FTPNHRKFKKPNLVIIHGYGGTSRWQFVHQVRPLSNRFNLYVPDLIFFGKSYSAGADRTE 89
+ N R P ++++ G+ R + + ++ L F + VP+ G S S D
Sbjct: 21 YIDNQRDTDGPAILLLPGWCHDHR-VYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGY 79
Query: 90 VFQAKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAE 125
Q K +E L +LGV F S+GG V + E
Sbjct: 80 QEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLE 115
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 215 LLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVNMES 274
L T D + + +T I WG D+ PL+ +L ++ ++L + G E
Sbjct: 213 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGQWAQWEH 271
Query: 275 PCELNILIKTFVFRHS 290
E N L+ F+ RH+
Sbjct: 272 ADEFNRLVIDFL-RHA 286
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 215 LLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVNMES 274
L T D + + +T I WG D+ PL+ +L ++ ++L + G E
Sbjct: 213 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGQWAQWEH 271
Query: 275 PCELNILIKTFVFRHS 290
E N L+ F+ RH+
Sbjct: 272 ADEFNRLVIDFL-RHA 286
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 42 LVIIHGYGGTSRWQFVHQVRPLSNRFNLYVPDLIFFGKSYSAGADRTEVFQ-AKCLVEGL 100
++ +HG TS + + H V + +PDLI GKS +G + K L
Sbjct: 47 VIFLHG-NATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWF 105
Query: 101 KRLGVGRFSVY-GISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQKE 149
+ L + + ++ G +G +A+H A + I +V + S + E E
Sbjct: 106 ELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDE 155
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 33 NHRKFKKPNLVIIHGYGGTSRWQFVHQVRPLSNRFNLYVPDLIFFGKSYSAGADRTEVFQ 92
+ K + ++ +HG TS + + H V + +PDLI GKS +G +
Sbjct: 38 DSEKHAENAVIFLHG-NATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLD 96
Query: 93 -AKCLVEGLKRLGVGRFSVY-GISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQKE 149
K L + L + + ++ G +G +A+H A + I +V + S + E E
Sbjct: 97 HYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDE 155
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 42 LVIIHGYGGTSRWQFVHQVRPLSNRFNLYVPDLIFFGKSYSAGADRTEVFQ-AKCLVEGL 100
++ +HG TS + + H V + +PDLI GKS +G + K L
Sbjct: 46 VIFLHG-NATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWF 104
Query: 101 KRLGVGRFSVY-GISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQKE 149
+ L + + ++ G +G +A+H A + I +V + S + E E
Sbjct: 105 ELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDE 154
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 40 PNLVIIHGYGGTSRWQFVHQVRPLSNRFNLYVPDLIF-FGKSYSAGADRTEVFQAKCLVE 98
P LV++HG +S + + S+++ Y D+I KS T A L++
Sbjct: 68 PPLVLLHGALFSST-XWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLD 126
Query: 99 GLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSA 140
LG+ + G+S GG+ + P + I+S A
Sbjct: 127 VFDNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILSPA 168
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/198 (18%), Positives = 76/198 (38%), Gaps = 11/198 (5%)
Query: 93 AKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSA-IGYTEEQKERQ 151
A+ LV+ L + + + G S GG + + P IDK+V + A + Y + +
Sbjct: 68 AQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEI 127
Query: 152 LTRIGRRISGFLVPESPQDLRFLVSLSMYRNDFLKWVPDFFFRQFINAMYKTHRKERLEM 211
I V ES R + M ++ + V F + F++ ++ + +
Sbjct: 128 FAAIN------AVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQ 181
Query: 212 IEHLLTKDADPNVPILTQETLIIWGDQDKVFPLEFAHQLHRHLGSKSKLVILKNTGHAVN 271
H++ + +P L I G ++ L +++ ++ GH V+
Sbjct: 182 YPHIVGWE---KIPAWDHPALFIPGGNSPYVSEQYRDDLLAQF-PQARAHVIAGAGHWVH 237
Query: 272 MESPCELNILIKTFVFRH 289
E P + I+ ++ H
Sbjct: 238 AEKPDAVLRAIRRYLNDH 255
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 23 DQTTIHFFTPNHRKFKKPNLVIIHGYGGTSRWQFVHQVRPLSNRFNLYVPDLIFFGKSYS 82
+ T +H+ R P +V+ + G T + QV LS F + D G S +
Sbjct: 10 NGTELHYRIDGERHGNAPWIVLSNSLG-TDLSXWAPQVAALSKHFRVLRYDTRGHGHSEA 68
Query: 83 AGADRTEVFQAKCLVEGL-KRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSA- 140
T + Q V GL L + R + G+S GG+ +A + I++V + ++A
Sbjct: 69 PKGPYT-IEQLTGDVLGLXDTLKIARANFCGLSXGGLTGVALAARHADRIERVALCNTAA 127
Query: 141 -IGYTE 145
IG E
Sbjct: 128 RIGSPE 133
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 42 LVIIHGYGGTSRWQFVHQVRPLSNRFNLYVPDLIFFGKSYSAGADRTEVFQ-AKCLVEGL 100
++ +HG TS + + H V + +PDLI GKS +G + K L
Sbjct: 46 VIFLHG-NATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWF 104
Query: 101 KRLGVGRFSVY-GISYGGIVAYHMAEMNPLEIDKVVIVSSAIGYTEEQKE 149
+ L + + ++ G +G +A+H A + I +V + S + E E
Sbjct: 105 ELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDE 154
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 189 PDFFFRQFINAMYKTHRKERLEMIEHLLTKDADPN 223
P FF QF+ A+ K R+E ++ L+ K PN
Sbjct: 109 PYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPN 143
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
Length = 1193
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 134 VVIVSSAIGYTEEQKERQLTRIGRRISGFLVPESPQDLRFLVSLSMYRN 182
V+++ Y +EQ+ + + +RI F E Q ++ LS Y+N
Sbjct: 581 VILLEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKN 629
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 91 FQAKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIV 137
++ L L+ L G V G+S GG+ A +A M P + ++V+V
Sbjct: 131 LNSETLAPVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLV 177
>pdb|3MF6|A Chain A, Computationally Designed Endo-1,4-Beta-Xylanase
Length = 193
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 74 LIFFGKSYSAGADRTEVFQAKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAE 125
L GK +S G RT + A G RL ++YG + +V+YH+ E
Sbjct: 48 LFLAGKGWSTGGRRTVTYNASFNPSGNARL-----TLYGWTRNPLVSYHIVE 94
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 253 HLGSKSKLVILKNTGHAVNMESPCELNILIKTFVFRHSY 291
+ K ++ +L GHAV+ ++P ++ + TF+ RH +
Sbjct: 258 QMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRF 296
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 253 HLGSKSKLVILKNTGHAVNMESPCELNILIKTFVFRHSY 291
+ K ++ +L GHAV+ ++P ++ + TF+ RH +
Sbjct: 264 QMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRF 302
>pdb|3MFC|A Chain A, Computationally Designed End0-1,4-Beta,Xylanase
Length = 194
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 74 LIFFGKSYSAGADRTEVFQAKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAE 125
L GK +S G RT + A G RL ++YG + +V+YH+ E
Sbjct: 48 LFLAGKGWSTGGRRTVTYNASFNPSGNARL-----TLYGWTRNPLVSYHIVE 94
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 38 KKPNLVIIHGYGGTSRWQFVHQVRPLSNRFNLYVPDLIFFGKSYSAGADRTEVFQAKCLV 97
+KP L + + G T+ + Q+ L+ F + D G S T + ++
Sbjct: 26 EKPLLALSNSIG-TTLHXWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVL 84
Query: 98 EGLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIV--SSAIGYTEEQKER 150
E L L V R G+S GGIV +A P I+++V+ S+ +G + ER
Sbjct: 85 ELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDER 139
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 41 NLVIIHGYGGTSRWQFVHQVRPLSNRF-----NLYVPDLIFFGKSYSAGADRTEVFQAKC 95
++++HG+ GT H +RPL+ + + +P L G Y +RT
Sbjct: 42 GVLLVHGFTGTP-----HSMRPLAEAYAKAGYTVCLPRLKGHGTHYE-DMERTTFHDWVA 95
Query: 96 LVE---GLKRLGVGRFSVYGISYGGIVAYHMAEMNPLEIDKVVIVSSAI 141
VE G + V G+S GG + ++AE +P +I +V +++A+
Sbjct: 96 SVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHP-DICGIVPINAAV 143
>pdb|3MF9|A Chain A, Computationally Designed Endo-1,4-Beta-Xylanase
Length = 193
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 74 LIFFGKSYSAGADRTEVFQAKCLVEGLKRLGVGRFSVYGISYGGIVAYHMAE 125
L GK +S G RT + A G RL ++YG + +V+YH+ E
Sbjct: 48 LFVAGKGWSTGGRRTVTYNASFNPSGNARL-----TLYGWTRNPLVSYHIVE 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,017,517
Number of Sequences: 62578
Number of extensions: 384707
Number of successful extensions: 1173
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1134
Number of HSP's gapped (non-prelim): 90
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)