Query 022522
Match_columns 296
No_of_seqs 251 out of 1533
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:10:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1314 DHHC-type Zn-finger pr 100.0 6.6E-36 1.4E-40 269.3 11.3 187 103-295 49-263 (414)
2 KOG1315 Predicted DHHC-type Zn 100.0 6E-36 1.3E-40 272.4 10.4 199 82-295 18-258 (307)
3 KOG0509 Ankyrin repeat and DHH 100.0 3.3E-34 7.2E-39 275.9 13.1 263 17-293 278-583 (600)
4 KOG1311 DHHC-type Zn-finger pr 100.0 2.5E-33 5.4E-38 258.6 13.9 156 125-296 79-267 (299)
5 PF01529 zf-DHHC: DHHC palmito 100.0 6.2E-33 1.3E-37 236.1 8.8 139 117-255 2-174 (174)
6 COG5273 Uncharacterized protei 100.0 1.3E-29 2.7E-34 233.6 14.9 195 101-295 55-280 (309)
7 KOG1313 DHHC-type Zn-finger pr 100.0 5.9E-30 1.3E-34 224.3 8.1 139 146-296 101-277 (309)
8 KOG1312 DHHC-type Zn-finger pr 99.9 2.1E-24 4.5E-29 190.5 9.9 76 113-188 109-189 (341)
9 PF13240 zinc_ribbon_2: zinc-r 88.6 0.3 6.4E-06 27.3 1.4 21 149-169 1-21 (23)
10 KOG1311 DHHC-type Zn-finger pr 86.3 1.2 2.7E-05 41.0 5.0 29 160-188 112-140 (299)
11 PF13248 zf-ribbon_3: zinc-rib 85.2 0.62 1.3E-05 26.7 1.6 22 148-169 3-24 (26)
12 PRK04136 rpl40e 50S ribosomal 82.5 0.81 1.8E-05 30.3 1.4 24 146-169 13-36 (48)
13 PTZ00303 phosphatidylinositol 80.7 1.2 2.6E-05 45.8 2.6 22 148-169 461-489 (1374)
14 PF12773 DZR: Double zinc ribb 80.6 1.7 3.7E-05 28.7 2.5 34 147-180 12-48 (50)
15 PF10571 UPF0547: Uncharacteri 76.8 1.8 3.9E-05 24.9 1.5 22 148-169 1-22 (26)
16 PF09726 Macoilin: Transmembra 67.7 40 0.00087 35.1 9.8 20 80-99 99-118 (697)
17 KOG1842 FYVE finger-containing 66.5 1.9 4.1E-05 41.7 -0.0 29 143-171 176-206 (505)
18 PF01363 FYVE: FYVE zinc finge 60.0 3.2 7E-05 29.2 0.2 25 147-171 9-35 (69)
19 PF06906 DUF1272: Protein of u 58.9 5 0.00011 27.5 1.0 32 148-179 6-45 (57)
20 smart00064 FYVE Protein presen 58.7 8.5 0.00019 26.9 2.2 25 147-171 10-36 (68)
21 PF01529 zf-DHHC: DHHC palmito 58.4 4.6 0.0001 33.6 0.9 30 147-176 62-91 (174)
22 PF12773 DZR: Double zinc ribb 56.9 10 0.00022 24.8 2.3 23 146-168 28-50 (50)
23 COG1552 RPL40A Ribosomal prote 56.8 2.6 5.7E-05 27.9 -0.6 25 146-170 13-37 (50)
24 TIGR00155 pqiA_fam integral me 52.0 21 0.00046 34.5 4.5 30 148-177 216-246 (403)
25 PF01020 Ribosomal_L40e: Ribos 50.9 7 0.00015 26.3 0.7 24 147-170 17-42 (52)
26 PF00641 zf-RanBP: Zn-finger i 47.4 6.4 0.00014 23.0 0.0 21 149-169 6-26 (30)
27 COG3336 Predicted membrane pro 47.4 62 0.0013 29.9 6.3 55 75-129 126-184 (299)
28 COG5273 Uncharacterized protei 46.7 32 0.00068 32.1 4.5 112 146-258 122-248 (309)
29 cd00065 FYVE FYVE domain; Zinc 46.2 15 0.00032 24.6 1.7 24 148-171 3-28 (57)
30 PF11674 DUF3270: Protein of u 45.7 87 0.0019 23.7 5.9 18 44-61 64-81 (90)
31 PF08600 Rsm1: Rsm1-like; Int 43.3 12 0.00026 28.2 1.0 13 173-185 53-65 (91)
32 KOG1729 FYVE finger containing 42.1 11 0.00023 34.8 0.7 27 147-173 168-197 (288)
33 PF13842 Tnp_zf-ribbon_2: DDE_ 41.0 21 0.00045 21.5 1.6 20 149-168 2-23 (32)
34 COG4986 ABC-type anion transpo 39.6 2.2E+02 0.0047 28.0 8.9 97 29-127 7-107 (523)
35 PRK15103 paraquat-inducible me 36.9 4.1E+02 0.0088 25.9 12.7 32 147-178 221-252 (419)
36 PF07010 Endomucin: Endomucin; 36.1 70 0.0015 28.5 4.7 28 108-135 200-227 (259)
37 PF12084 DUF3561: Protein of u 34.8 1.4E+02 0.003 23.2 5.6 63 28-95 40-105 (107)
38 COG2093 DNA-directed RNA polym 32.5 24 0.00053 24.7 1.1 22 148-169 5-26 (64)
39 KOG1818 Membrane trafficking a 30.7 19 0.00042 36.6 0.5 22 148-169 166-189 (634)
40 KOG3183 Predicted Zn-finger pr 29.6 23 0.00049 31.7 0.6 16 167-182 34-49 (250)
41 PF02150 RNA_POL_M_15KD: RNA p 29.6 19 0.00042 22.1 0.2 9 148-156 2-10 (35)
42 PF00751 DM: DM DNA binding do 29.5 20 0.00044 23.7 0.3 22 161-182 2-28 (47)
43 smart00661 RPOL9 RNA polymeras 29.3 34 0.00073 22.4 1.3 10 148-157 1-10 (52)
44 cd01995 ExsB ExsB is a transcr 27.1 22 0.00048 29.4 0.2 15 160-174 150-164 (169)
45 PRK14559 putative protein seri 27.0 68 0.0015 33.1 3.6 37 147-185 15-51 (645)
46 TIGR02745 ccoG_rdxA_fixG cytoc 26.9 3.3E+02 0.0071 26.7 8.2 21 111-131 184-204 (434)
47 smart00547 ZnF_RBZ Zinc finger 26.9 38 0.00082 18.8 1.1 21 149-169 4-24 (26)
48 KOG1398 Uncharacterized conser 26.7 18 0.00039 34.6 -0.5 26 157-188 10-35 (460)
49 PRK00432 30S ribosomal protein 25.3 46 0.001 22.2 1.4 24 146-169 19-45 (50)
50 PF04161 Arv1: Arv1-like famil 24.5 28 0.00061 30.4 0.3 25 150-174 3-37 (208)
51 COG4640 Predicted membrane pro 24.5 42 0.0009 32.3 1.5 25 148-172 2-26 (465)
52 PRK14559 putative protein seri 24.4 47 0.001 34.3 1.9 34 148-183 2-35 (645)
53 PF09297 zf-NADH-PPase: NADH p 23.8 39 0.00085 20.0 0.8 22 147-168 3-28 (32)
54 smart00423 PSI domain found in 22.9 34 0.00073 22.0 0.4 17 165-181 5-21 (46)
55 PF14319 Zn_Tnp_IS91: Transpos 22.9 40 0.00088 26.4 0.9 23 147-169 42-68 (111)
56 KOG1819 FYVE finger-containing 22.7 30 0.00064 34.3 0.1 22 148-169 902-925 (990)
57 PRK14811 formamidopyrimidine-D 22.7 40 0.00087 30.7 1.0 15 147-161 255-269 (269)
58 PRK10726 hypothetical protein; 22.5 3.7E+02 0.0081 20.8 6.9 34 27-60 36-72 (105)
59 PF01437 PSI: Plexin repeat; 22.5 20 0.00043 23.7 -0.8 18 165-182 6-23 (51)
60 KOG0509 Ankyrin repeat and DHH 22.4 3.5E+02 0.0076 27.6 7.5 31 147-177 434-464 (600)
61 PRK03681 hypA hydrogenase nick 21.9 41 0.00089 26.4 0.8 24 146-169 69-95 (114)
62 PF14127 DUF4294: Domain of un 21.3 76 0.0016 26.6 2.3 32 243-295 103-134 (157)
63 TIGR00364 exsB protein. This p 20.9 47 0.001 28.4 1.0 13 161-173 189-201 (201)
64 PF07649 C1_3: C1-like domain; 20.7 40 0.00088 19.6 0.4 21 149-169 2-23 (30)
No 1
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=6.6e-36 Score=269.28 Aligned_cols=187 Identities=17% Similarity=0.143 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccCCCCCCccccccCCCCCCCCCCCCCCCCCCCccccccCcccccccCcccccC
Q 022522 103 LIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFG 182 (296)
Q Consensus 103 ~~~~~f~~~~~~~~~~~~~~~~~dPG~vp~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpWi~ 182 (296)
.-.+.|.+...+.+++|+.++++.||++|....++.. +++.-.+||..|+.+|++||||||.|||||.+|||||||+|
T Consensus 49 ~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~--~D~~~lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWin 126 (414)
T KOG1314|consen 49 PNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENP--KDEMFLQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWIN 126 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC--hhHHHHHHHhhccCcCCCccccchHHHHHHHhhccCCcchh
Confidence 3457788888999999999999999999999875432 22222489999999999999999999999999999999999
Q ss_pred ceecch---hHHH-HHHHHhhHhhc-----------------ccccc-C---Cch---HHHHHHHHHHHHHHHHHHHHHH
Q 022522 183 NCIEAS---YVAC-SAQFVGKSQNF-----------------DKSQS-E---NDW---VVNLATSTMLFSILQLLWQAVF 234 (296)
Q Consensus 183 nCIG~~---y~~~-~~~~~~~~~~~-----------------~~~~~-~---~~~---~~~~~~~~~~~~~~~~i~v~~L 234 (296)
||||.. ||.- ++..+.+++.- ..... . ..+ .....+..+-+++...+.+++|
T Consensus 127 nCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g~~hlp~v~ft~~~li~~vfslgla~gv~la~t~L 206 (414)
T KOG1314|consen 127 NCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHLPIVFFTLSSLIALVFSLGLAIGVVLALTML 206 (414)
T ss_pred hcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhhcccccCceeeccHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999996 3331 11111111100 00000 0 011 1112233344555667788889
Q ss_pred HHHHHHHHHhChhhHHhhhccCCCccccccCCCCCcccCCCccCCCCHhHHHHHHHhcCCC
Q 022522 235 FMWHIYCVCFNVRTDEWVNWKKYPEFQVIESEPGESFTRMRFTNPYDKGFLQNVKDFLSLR 295 (296)
Q Consensus 235 l~~q~~lI~~n~TT~E~~~~~r~~~~~~~~~~~~~~~~~~~~~npyd~G~~~Nl~effg~~ 295 (296)
+..|+.+|.+|+|.+|.+.-+|..+.+..- ..+..++...|||.|+..|++|+|..+
T Consensus 207 f~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~----~~d~~~~f~ypydlgWr~n~r~vf~~~ 263 (414)
T KOG1314|consen 207 FFIQLKQILNNRTGIESWIVEKAMDRREYY----FNDDEGEFTYPYDLGWRINLREVFFQN 263 (414)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhh----ccCCCCceeeeccccccccHHHHhhhc
Confidence 999999999999999998744433333111 123345788999999777999999765
No 2
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=6e-36 Score=272.39 Aligned_cols=199 Identities=17% Similarity=0.261 Sum_probs=137.9
Q ss_pred HHHHHHHHHhhhhheec--------chhhHHHHHHHHHHHHHHHHHHHHhhcCCCccCCCCCCcccc------cc-----
Q 022522 82 FFNILFIWGFYIAVVRQ--------AVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKL------VE----- 142 (296)
Q Consensus 82 ~f~~~~~w~~~~~~~~~--------~~~~~~~~~f~~~~~~~~~~~~~~~~~dPG~vp~~~~~~~~~------~~----- 142 (296)
++.+.+.|.+|+++... .+.....+.+..+.++..|+|++++++|||.+|.......+. +.
T Consensus 18 ~i~~~~~~~yy~~v~~~c~~~i~~~~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~~~~~~~~~~ 97 (307)
T KOG1315|consen 18 IILLVIGWTYYVYVAVLCILSISLTIPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSLENGSDNERD 97 (307)
T ss_pred eeeeeEEEEEEEeehhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccccccCccccc
Confidence 44566778888887652 123567788999999999999999999999999765422110 00
Q ss_pred -------CCCCCCCCCCCCCCCCCCCccccccCcccccccCcccccCceecch---hHH--HHHHHH-------hhHh--
Q 022522 143 -------GSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIEAS---YVA--CSAQFV-------GKSQ-- 201 (296)
Q Consensus 143 -------~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpWi~nCIG~~---y~~--~~~~~~-------~~~~-- 201 (296)
.+...++|.+|+.+||+|||||+.|+|||+||||||||+|||||++ ||. +.+.++ ....
T Consensus 98 ~~~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~ 177 (307)
T KOG1315|consen 98 LPGYTRTSDGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGF 177 (307)
T ss_pred ceeeEecCCCCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123599999999999999999999999999999999999999996 232 111111 1111
Q ss_pred --hccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHhhhccCCCccccccCCCCCcccCCCccCC
Q 022522 202 --NFDKSQSENDWVVNLATSTMLFSILQLLWQAVFFMWHIYCVCFNVRTDEWVNWKKYPEFQVIESEPGESFTRMRFTNP 279 (296)
Q Consensus 202 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~Ll~~q~~lI~~n~TT~E~~~~~r~~~~~~~~~~~~~~~~~~~~~np 279 (296)
++.......+.........++.+...++-+..++++|+++|++|+||+|..+.+.+. .+....|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~-------------~~~~~~~~ 244 (307)
T KOG1315|consen 178 TKYFQGGAGPSSLLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVFR-------------SGLHNKNG 244 (307)
T ss_pred HHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhcccccc-------------ccccccCC
Confidence 111111112222233344566666677777779999999999999999998654222 12235677
Q ss_pred CCHhHHHHHHHhcCCC
Q 022522 280 YDKGFLQNVKDFLSLR 295 (296)
Q Consensus 280 yd~G~~~Nl~effg~~ 295 (296)
||. ..|++|+||.+
T Consensus 245 ~~~--~~n~~~vfg~~ 258 (307)
T KOG1315|consen 245 FNL--YVNFREVFGSN 258 (307)
T ss_pred cce--eecHHHHhCCC
Confidence 777 78999999976
No 3
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=100.00 E-value=3.3e-34 Score=275.95 Aligned_cols=263 Identities=20% Similarity=0.269 Sum_probs=172.1
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhhhcc-------cccccchHHH-HHHHHHH
Q 022522 17 ICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWCRRLL-------GVCASAPAFV-FFNILFI 88 (296)
Q Consensus 17 ~~~~~~~~~~f~~p~~~l~~~~~~~~~~~~~~~lpl~~~~~~~~~~~~~~~~~~~-------~~~~~~p~~~-~f~~~~~ 88 (296)
+++..++.+.|. .++.++.+.+..+.++.+-.+ ...+....+.+++.... +....+|+.. ++.++.+
T Consensus 278 ~~~~~~~~~~f~----~~~~~~~~~~~~~g~i~~~~~-~w~i~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 352 (600)
T KOG0509|consen 278 LGSKLAALIFFI----FLGLFYFISSWLPGVIFLINS-LWLIKGLALGKLVLTCLCATRKIVGFLLRPPLLSGFFLSTLF 352 (600)
T ss_pred hhhHHHHHHHHH----HHHHHHHHHhhccchhhhhhh-HHHHhhhhhhhhhhheeccchhhccccccchhHHHHHHHHHH
Confidence 344445555554 677777888888877766665 33332334444444321 2455667776 8889999
Q ss_pred HHhhhhheecch--hhHHHHHHHHHHHHHHHHHHHHhhcCCCccCCCCCCcc-------ccccCCCCCCCCCCCCCCCCC
Q 022522 89 WGFYIAVVRQAV--SSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLD-------KLVEGSELGVDPDNENSLSRK 159 (296)
Q Consensus 89 w~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~dPG~vp~~~~~~~-------~~~~~~~~~~~C~~C~~~kP~ 159 (296)
|.++.|.....+ .+.....+.+..+..++.++++..+|||++|.+++... |.++++...+||.+|.++||.
T Consensus 353 w~~~~w~~~i~~~~~~~~~~~~i~~~l~~~~~f~~~~rsDPg~i~~~~~~~~~tIs~l~d~gkf~~en~FC~~clirKp~ 432 (600)
T KOG0509|consen 353 WFYYFWFSKITPYTLFDFHYCFIISVLAYFITFGLFLRSDPGFIPTSTEVGRETISQLIDFGKFDLENRFCLTCLIRKPL 432 (600)
T ss_pred HHHHhhheeccchhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHhhccccccccccceeeeeeecCC
Confidence 999999874222 34456666667777778888888899999999987542 334455422699999999999
Q ss_pred CCccccccCcccccccCcccccCceecch---hHH---H-----HHHHHhhHh-hccccccCCchHHHHHHHH-------
Q 022522 160 RVRYCKICKAHVEGFDHHCPAFGNCIEAS---YVA---C-----SAQFVGKSQ-NFDKSQSENDWVVNLATST------- 220 (296)
Q Consensus 160 Rs~HC~~C~~CV~r~DHHCpWi~nCIG~~---y~~---~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------- 220 (296)
|||||+.|||||+||||||||++||||.+ +|+ . ...++.++. ++.............++.+
T Consensus 433 rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~ 512 (600)
T KOG0509|consen 433 RSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYIMNLENASTIYVGFLIAVQAFRIPK 512 (600)
T ss_pred ccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999996 222 1 112222332 2222211110001111111
Q ss_pred ------HHHHHHHHHHHHHHHHHHHH-HHHhChhhHHhhhccCCCccccccCCCCCcccCCCccCCCCHhHHHHHHHhcC
Q 022522 221 ------MLFSILQLLWQAVFFMWHIY-CVCFNVRTDEWVNWKKYPEFQVIESEPGESFTRMRFTNPYDKGFLQNVKDFLS 293 (296)
Q Consensus 221 ------~~~~~~~~i~v~~Ll~~q~~-lI~~n~TT~E~~~~~r~~~~~~~~~~~~~~~~~~~~~npyd~G~~~Nl~effg 293 (296)
+...-+...|.......|-+ .++.++||+|+++.+|+++++.+. ...++|++.|..+|+.+|+-
T Consensus 513 ~~~~~~~~n~~~~~t~~~~~~~~~~~~~~c~~~tt~e~~n~~r~~~~~~~~---------~~~~~~~s~g~~~Nl~df~~ 583 (600)
T KOG0509|consen 513 PVTGNLLGNEDLNPTWGSTSTKCQHYNCACLHLTTNEQINVKRYEHLGIKR---------GPTRSPFSPGPIRNLVDFFL 583 (600)
T ss_pred cceeeeeeccccccccccccccccccceeeecccHHHHHHHHHhhcccccc---------CcCCCCCCchhhhcchheee
Confidence 11111112355444444444 469999999999999999988553 34789999999999999974
No 4
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=258.59 Aligned_cols=156 Identities=22% Similarity=0.272 Sum_probs=105.1
Q ss_pred cCCCccCCCCCCcccc---c---c------CCCCCCCCCCCCCCCCCCCccccccCcccccccCcccccCceecch---h
Q 022522 125 KDPGLITNEFPHLDKL---V---E------GSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIEAS---Y 189 (296)
Q Consensus 125 ~dPG~vp~~~~~~~~~---~---~------~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpWi~nCIG~~---y 189 (296)
+|||.+|+..+...|. . + .....++|.+|+..||+|||||+.||+||.||||||||+|||||.+ |
T Consensus 79 sdpg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~ 158 (299)
T KOG1311|consen 79 SDPGIVPRADDEQIEDPERAPLYKNVDVNGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRY 158 (299)
T ss_pred CCCceecCcccCCCCCccccccCCCcccCCcccceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHH
Confidence 4999999963211111 0 0 0112589999999999999999999999999999999999999997 3
Q ss_pred HHHHHHHH---------hhHhhccc----c---cc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHh
Q 022522 190 VACSAQFV---------GKSQNFDK----S---QS--ENDWVVNLATSTMLFSILQLLWQAVFFMWHIYCVCFNVRTDEW 251 (296)
Q Consensus 190 ~~~~~~~~---------~~~~~~~~----~---~~--~~~~~~~~~~~~~~~~~~~~i~v~~Ll~~q~~lI~~n~TT~E~ 251 (296)
|.....+. .....+.. . .. .........+.+.+++++....++.|+.+|+++|.+|+||+|+
T Consensus 159 F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~ 238 (299)
T KOG1311|consen 159 FVLFLFYLALGVLLALAFLFYELLQRADNLKVNLTPVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYES 238 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhh
Confidence 33111111 11111111 0 11 1111112233445667777777888999999999999999999
Q ss_pred hhccCCCccccccCCCCCcccCCCccCCCCHhHHHHHHHhcCCCC
Q 022522 252 VNWKKYPEFQVIESEPGESFTRMRFTNPYDKGFLQNVKDFLSLRR 296 (296)
Q Consensus 252 ~~~~r~~~~~~~~~~~~~~~~~~~~~npyd~G~~~Nl~effg~~r 296 (296)
++. +++ ....+|||+|.++|++++||.++
T Consensus 239 ~~~--~~~--------------~~~~~~~~~g~~~n~~~~~~~~~ 267 (299)
T KOG1311|consen 239 IKS--LDF--------------VSRSNPYDLGLLKNLQEVFGGPL 267 (299)
T ss_pred hhc--ccc--------------ccccCCCchhHHHHHHHHhCCCC
Confidence 864 110 01259999999999999999864
No 5
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=99.98 E-value=6.2e-33 Score=236.09 Aligned_cols=139 Identities=19% Similarity=0.349 Sum_probs=95.9
Q ss_pred HHHHHHhhcCCCccCCCC-CC--------cc-------ccccCCCCCCCCCCCCCCCCCCCccccccCcccccccCcccc
Q 022522 117 IGLCSIMSKDPGLITNEF-PH--------LD-------KLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPA 180 (296)
Q Consensus 117 ~~~~~~~~~dPG~vp~~~-~~--------~~-------~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpW 180 (296)
++|+++..+|||++|+.. ++ .. +..+.+...++|.+|+..||+|||||+.||+||.||||||||
T Consensus 2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w 81 (174)
T PF01529_consen 2 WSYFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPW 81 (174)
T ss_pred EEehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEECcccCCcCCCcceeccccccccccccccchh
Confidence 568899999999999981 10 00 001112235999999999999999999999999999999999
Q ss_pred cCceecch---hHHHHHH---------HHhhHhhc----cccccCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022522 181 FGNCIEAS---YVACSAQ---------FVGKSQNF----DKSQSENDWVVN--LATSTMLFSILQLLWQAVFFMWHIYCV 242 (296)
Q Consensus 181 i~nCIG~~---y~~~~~~---------~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~i~v~~Ll~~q~~lI 242 (296)
+|||||.+ ||+.... ........ ............ ..+..++.+++..++++.+++.|++++
T Consensus 82 ~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 161 (174)
T PF01529_consen 82 LGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISFSSFWIFSNFSSIFLLIISIFFFIFVGFLLIFQLYLI 161 (174)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999996 3321111 00000011 111111111111 114567777888999999999999999
Q ss_pred HhChhhHHhhhcc
Q 022522 243 CFNVRTDEWVNWK 255 (296)
Q Consensus 243 ~~n~TT~E~~~~~ 255 (296)
++|+||+|.+++|
T Consensus 162 ~~n~Tt~E~~~~~ 174 (174)
T PF01529_consen 162 LRNITTYERIKRK 174 (174)
T ss_pred HcCCcHHHHHHcC
Confidence 9999999999753
No 6
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=233.59 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=126.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCccCCCCCCc--ccc------ccCCCCCCCCCCCCCCCCCCCccccccCcccc
Q 022522 101 SSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHL--DKL------VEGSELGVDPDNENSLSRKRVRYCKICKAHVE 172 (296)
Q Consensus 101 ~~~~~~~f~~~~~~~~~~~~~~~~~dPG~vp~~~~~~--~~~------~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~ 172 (296)
.....+.+.+...+...++++.+.+|||+.+++.... ++. .+.+...++|.+|+.+||+|||||+.||+||+
T Consensus 55 ~~~~~i~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~ 134 (309)
T COG5273 55 VVLFIILFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHCSICNRCVL 134 (309)
T ss_pred hhhhhhhhhhhhhhHHHhhHHHhhcCCCccCccccccchhhhhhhhhhcCccccceeccccccccCCCCccchhhcchhh
Confidence 3556777788888889999999999999998664321 111 11122469999999999999999999999999
Q ss_pred cccCcccccCceecchh---HH-H-HH-------HHHhhHhhccccccC--CchHH-H-HHHHHHHHHHHHHHHHHHHHH
Q 022522 173 GFDHHCPAFGNCIEASY---VA-C-SA-------QFVGKSQNFDKSQSE--NDWVV-N-LATSTMLFSILQLLWQAVFFM 236 (296)
Q Consensus 173 r~DHHCpWi~nCIG~~y---~~-~-~~-------~~~~~~~~~~~~~~~--~~~~~-~-~~~~~~~~~~~~~i~v~~Ll~ 236 (296)
||||||||+|||||.++ |. . .+ .+...+.++..+... ++... . ++......+...++.+..++.
T Consensus 135 k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~f~~~~~~~~ 214 (309)
T COG5273 135 KFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAICFLIFGCSLLGVVFFIITTLLLL 214 (309)
T ss_pred ccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999972 21 1 11 111112233333211 11111 2 222223445556677778889
Q ss_pred HHHHHHHhChhhHHhhhccCCCccccc---cCCC---CC-cccCCCccCCCCHhHHHHHHHhcCCC
Q 022522 237 WHIYCVCFNVRTDEWVNWKKYPEFQVI---ESEP---GE-SFTRMRFTNPYDKGFLQNVKDFLSLR 295 (296)
Q Consensus 237 ~q~~lI~~n~TT~E~~~~~r~~~~~~~---~~~~---~~-~~~~~~~~npyd~G~~~Nl~effg~~ 295 (296)
++.+++..|+||+|.....|....-.. ..+. .+ .....+..+|++.|.-+|+..+++.+
T Consensus 215 ~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~ 280 (309)
T COG5273 215 FLIYLILNNLTTIEFIQISRGGSTLEFFPLCRESNLPFTNIFDSSEGALPLDLGIGQNLSTIKGSN 280 (309)
T ss_pred HHHHHHHhhHHHHHHHHhccceecccccchhccCCcCceeccCCCccccccccCccccceeecCCC
Confidence 999999999999999875444332211 0000 00 11112256788888888888877654
No 7
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.96 E-value=5.9e-30 Score=224.32 Aligned_cols=139 Identities=21% Similarity=0.242 Sum_probs=97.0
Q ss_pred CCCCCCCCCCCCCCCCccccccCcccccccCcccccCceecch---hHHH---------HHHHHhhHhhc-------ccc
Q 022522 146 LGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIEAS---YVAC---------SAQFVGKSQNF-------DKS 206 (296)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpWi~nCIG~~---y~~~---------~~~~~~~~~~~-------~~~ 206 (296)
++.+|.+|..+||+|+|||+.|||||+||||||||+|||||+. ||.. .+..++....+ .++
T Consensus 101 ~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~ 180 (309)
T KOG1313|consen 101 NDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEI 180 (309)
T ss_pred cccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhc
Confidence 4689999999999999999999999999999999999999984 4321 11111111100 011
Q ss_pred -------ccCCch---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHhhhcc--CCCccccccCCC
Q 022522 207 -------QSENDW---V-------VNLATSTMLFSILQLLWQAVFFMWHIYCVCFNVRTDEWVNWK--KYPEFQVIESEP 267 (296)
Q Consensus 207 -------~~~~~~---~-------~~~~~~~~~~~~~~~i~v~~Ll~~q~~lI~~n~TT~E~~~~~--r~~~~~~~~~~~ 267 (296)
....|. . ........+.++..++.++.+..+|.++|.+|.|.+|+...+ |.++..
T Consensus 181 tay~~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a------ 254 (309)
T KOG1313|consen 181 TAYASDVAHVAPPPSILRVYKNITRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLA------ 254 (309)
T ss_pred ccccCcccccCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHH------
Confidence 011111 0 011234556666677788889999999999999999997632 333222
Q ss_pred CCcccCCCccCCCCHhHHHHHHHhcCCCC
Q 022522 268 GESFTRMRFTNPYDKGFLQNVKDFLSLRR 296 (296)
Q Consensus 268 ~~~~~~~~~~npyd~G~~~Nl~effg~~r 296 (296)
+...||+|.|..+||+.|+|-.|
T Consensus 255 ------~~R~~~~n~g~k~nWr~fLg~~~ 277 (309)
T KOG1313|consen 255 ------HLRSNPTNFGGKANWRNFLGLFR 277 (309)
T ss_pred ------hccCCCcccchHHHHHHhhcccc
Confidence 12379999999999999999764
No 8
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.91 E-value=2.1e-24 Score=190.45 Aligned_cols=76 Identities=28% Similarity=0.392 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhcCCCccCCCCCCc-cccccCCC----CCCCCCCCCCCCCCCCccccccCcccccccCcccccCceecc
Q 022522 113 AMIIIGLCSIMSKDPGLITNEFPHL-DKLVEGSE----LGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIEA 187 (296)
Q Consensus 113 ~~~~~~~~~~~~~dPG~vp~~~~~~-~~~~~~~~----~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpWi~nCIG~ 187 (296)
++=..++..+..+|||.+.++++.. .+.-+.|. ...-|+||+.+||.|||||+.||+||+||||||.|+|||||+
T Consensus 109 ivp~i~f~ltc~snpg~i~k~n~s~~~~~ypYDy~if~k~~kCSTCki~KPARSKHCsiCNrCV~rfDHHCiWiNNCIG~ 188 (341)
T KOG1312|consen 109 IVPLIFFTLTCGSNPGIITKANESLFLHVYPYDYVIFPKNVKCSTCKIRKPARSKHCSICNRCVHRFDHHCIWINNCIGA 188 (341)
T ss_pred HHHHHHHhhhhcCCCCccchhhhccceeccCccceeecCCCccccccCCCccccccchHHHHHHHHhccceEeeeccccc
Confidence 3335677888999999999876532 22223331 237899999999999999999999999999999999999999
Q ss_pred h
Q 022522 188 S 188 (296)
Q Consensus 188 ~ 188 (296)
+
T Consensus 189 ~ 189 (341)
T KOG1312|consen 189 W 189 (341)
T ss_pred c
Confidence 6
No 9
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=88.63 E-value=0.3 Score=27.29 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCccccccCc
Q 022522 149 DPDNENSLSRKRVRYCKICKA 169 (296)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~~ 169 (296)
+|+.|...-++.++.|..|+.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 689999999999999998875
No 10
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=86.30 E-value=1.2 Score=40.96 Aligned_cols=29 Identities=24% Similarity=0.599 Sum_probs=26.6
Q ss_pred CCccccccCcccccccCcccccCceecch
Q 022522 160 RVRYCKICKAHVEGFDHHCPAFGNCIEAS 188 (296)
Q Consensus 160 Rs~HC~~C~~CV~r~DHHCpWi~nCIG~~ 188 (296)
+.|+|..|+..+.++-|||+.-|+||...
T Consensus 112 ~~~~C~~C~~~rPpRs~HCsvC~~CV~rf 140 (299)
T KOG1311|consen 112 EWKYCDTCQLYRPPRSSHCSVCNNCVLRF 140 (299)
T ss_pred ceEEcCcCcccCCCCcccchhhccccccc
Confidence 37999999999999999999999999654
No 11
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=85.17 E-value=0.62 Score=26.68 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCCCCccccccCc
Q 022522 148 VDPDNENSLSRKRVRYCKICKA 169 (296)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~~ 169 (296)
++|+.|...-++.++.|+.|+.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 6899999988888999998875
No 12
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=82.45 E-value=0.81 Score=30.26 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCCCCCccccccCc
Q 022522 146 LGVDPDNENSLSRKRVRYCKICKA 169 (296)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~ 169 (296)
....|..|..+-|+|+..|+.|+.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 458899999999999999998876
No 13
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=80.69 E-value=1.2 Score=45.84 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=18.6
Q ss_pred CCCCCCCCCCC-------CCCccccccCc
Q 022522 148 VDPDNENSLSR-------KRVRYCKICKA 169 (296)
Q Consensus 148 ~~C~~C~~~kP-------~Rs~HC~~C~~ 169 (296)
+-|..|+..-. .|-||||.|++
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCcc
Confidence 67999998874 39999999877
No 14
>PF12773 DZR: Double zinc ribbon
Probab=80.60 E-value=1.7 Score=28.66 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCC---CCCccccccCcccccccCcccc
Q 022522 147 GVDPDNENSLSR---KRVRYCKICKAHVEGFDHHCPA 180 (296)
Q Consensus 147 ~~~C~~C~~~kP---~Rs~HC~~C~~CV~r~DHHCpW 180 (296)
.+||..|...-+ ...++|..|++=+...+.+|+.
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence 588888888766 3457788888888888888874
No 15
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=76.78 E-value=1.8 Score=24.93 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCCCCccccccCc
Q 022522 148 VDPDNENSLSRKRVRYCKICKA 169 (296)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~~ 169 (296)
+.|+.|....|.-++-|..||.
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 3599999999999999998874
No 16
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=67.70 E-value=40 Score=35.07 Aligned_cols=20 Identities=15% Similarity=0.449 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhhheecc
Q 022522 80 FVFFNILFIWGFYIAVVRQA 99 (296)
Q Consensus 80 ~~~f~~~~~w~~~~~~~~~~ 99 (296)
++|++.+.+|+.|+|-+..+
T Consensus 99 ~~~~~~~~v~~~~~~~~~~~ 118 (697)
T PF09726_consen 99 LFFAASTYVWVQYVWHTDRG 118 (697)
T ss_pred HHHHHhHHHHHHHhhhccCC
Confidence 33566778899999866543
No 17
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=66.49 E-value=1.9 Score=41.66 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCCCC--CCCCccccccCccc
Q 022522 143 GSELGVDPDNENSLS--RKRVRYCKICKAHV 171 (296)
Q Consensus 143 ~~~~~~~C~~C~~~k--P~Rs~HC~~C~~CV 171 (296)
+|..-.+|+.|...= -.|-||||.||+-+
T Consensus 176 DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~Vm 206 (505)
T KOG1842|consen 176 DDSSVQFCPECANSFGLTRRRHHCRLCGRVM 206 (505)
T ss_pred CCCcccccccccchhhhHHHhhhhhhcchHH
Confidence 344468999998773 45889999999854
No 18
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=59.95 E-value=3.2 Score=29.23 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=12.3
Q ss_pred CCCCCCCCCC--CCCCCccccccCccc
Q 022522 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (296)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (296)
...|..|... --.|-|||+.||+.|
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~v 35 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVV 35 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEE
Confidence 4667777765 345789999998855
No 19
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=58.92 E-value=5 Score=27.48 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCC-------ccccccCcccccc-cCccc
Q 022522 148 VDPDNENSLSRKRV-------RYCKICKAHVEGF-DHHCP 179 (296)
Q Consensus 148 ~~C~~C~~~kP~Rs-------~HC~~C~~CV~r~-DHHCp 179 (296)
.-|..|..--|+-| .-|..|..|+... +++||
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP 45 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP 45 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc
Confidence 34666666655544 6688999999888 99998
No 20
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=58.38 E-value=4.6 Score=33.62 Aligned_cols=30 Identities=10% Similarity=-0.050 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCCccccccCcccccccC
Q 022522 147 GVDPDNENSLSRKRVRYCKICKAHVEGFDH 176 (296)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DH 176 (296)
.+.|..|+.-...+-|||..-+.||.+..|
T Consensus 62 s~HC~~C~~CV~~~DHHC~w~~~cIG~~N~ 91 (174)
T PF01529_consen 62 SHHCRVCNRCVLRFDHHCPWLGNCIGRRNH 91 (174)
T ss_pred ceeccccccccccccccchhhccccccccH
Confidence 466666666666666666666666666555
No 22
>PF12773 DZR: Double zinc ribbon
Probab=56.90 E-value=10 Score=24.79 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCCCCCCccccccC
Q 022522 146 LGVDPDNENSLSRKRVRYCKICK 168 (296)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~ 168 (296)
...+|+.|....++.+++|..|+
T Consensus 28 ~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 28 SKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCCCcCCcCCCcCCcCccCccc
Confidence 35899999999999999999886
No 23
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=56.83 E-value=2.6 Score=27.95 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCCCCCccccccCcc
Q 022522 146 LGVDPDNENSLSRKRVRYCKICKAH 170 (296)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~C 170 (296)
+...|..|..+-|+|+.-|+.|+.=
T Consensus 13 ~kkIC~rC~Arnp~~A~kCRkC~~k 37 (50)
T COG1552 13 NKKICRRCYARNPPRATKCRKCGYK 37 (50)
T ss_pred hHHHHHHhcCCCCcchhHHhhccCC
Confidence 3578999999999999999988753
No 24
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=52.00 E-value=21 Score=34.49 Aligned_cols=30 Identities=7% Similarity=0.024 Sum_probs=22.5
Q ss_pred CCCCCCCCC-CCCCCccccccCcccccccCc
Q 022522 148 VDPDNENSL-SRKRVRYCKICKAHVEGFDHH 177 (296)
Q Consensus 148 ~~C~~C~~~-kP~Rs~HC~~C~~CV~r~DHH 177 (296)
.-|++|... +|....+|.+|+.-..+.+++
T Consensus 216 ~~C~~Cd~~~~~~~~a~CpRC~~~L~~~~~~ 246 (403)
T TIGR00155 216 RSCSACHTTILPAQEPVCPRCSTPLYVRRRN 246 (403)
T ss_pred CcCCCCCCccCCCCCcCCcCCCCcccCCCCC
Confidence 559999984 555567899998887777664
No 25
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=50.91 E-value=7 Score=26.33 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCCccccc--cCcc
Q 022522 147 GVDPDNENSLSRKRVRYCKI--CKAH 170 (296)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~--C~~C 170 (296)
...|..|..+-|+|+..|+. |+.+
T Consensus 17 k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 17 KMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp -EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred ceecccccCcCCCCccceecccCCCC
Confidence 57899999999999999998 8764
No 26
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=47.38 E-value=6.4 Score=23.05 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCccccccCc
Q 022522 149 DPDNENSLSRKRVRYCKICKA 169 (296)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~~ 169 (296)
.|..|...-++++.+|..|+.
T Consensus 6 ~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 6 KCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp EETTTTEEEESSSSB-TTT--
T ss_pred cCCCCcCCchHHhhhhhCcCC
Confidence 488888888888888888864
No 27
>COG3336 Predicted membrane protein [Function unknown]
Probab=47.36 E-value=62 Score=29.88 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=34.0
Q ss_pred ccchHHH-HHHHHHHHHhhhhheec--chhhHHHHHHHHHHHHHHHHHHHHhhc-CCCc
Q 022522 75 ASAPAFV-FFNILFIWGFYIAVVRQ--AVSSLIGGLFNIEVAMIIIGLCSIMSK-DPGL 129 (296)
Q Consensus 75 ~~~p~~~-~f~~~~~w~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~-dPG~ 129 (296)
...|..+ +.....+|.+++-...+ .+++..+.+.++.++...|.|+..+.. |||.
T Consensus 126 ~~~P~vA~ilfig~~~~~hvpplfda~v~~p~~H~lm~~~~f~~aylfww~mI~~dpg~ 184 (299)
T COG3336 126 LSHPIVALILFIGAFWAWHVPPLFDAAVTSPTLHLLMNLLFFLSAYLFWWAMIGPDPGP 184 (299)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 3456666 33344445444332222 245778888888888888888877766 9983
No 28
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=46.69 E-value=32 Score=32.08 Aligned_cols=112 Identities=12% Similarity=-0.069 Sum_probs=66.6
Q ss_pred CCCCCCCCCCCCCCCCccccccCcccccccCcccccCceecch----hHHHHHH-HHhhHhhcc---------ccccCCc
Q 022522 146 LGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIEAS----YVACSAQ-FVGKSQNFD---------KSQSEND 211 (296)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpWi~nCIG~~----y~~~~~~-~~~~~~~~~---------~~~~~~~ 211 (296)
..+.|..|+.=....-|||.-=|+||.+..|- -++-=..... .+..... +........ .+..+..
T Consensus 122 RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r-~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (309)
T COG5273 122 RSHHCSICNRCVLKFDHHCPWINNCVGFRNYR-FFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAICFLIFGCSL 200 (309)
T ss_pred CCccchhhcchhhccCccCcccccccCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHhhhH
Confidence 46899999999999999999999999876551 1111111111 1111111 111111000 0111222
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHhhhccCCC
Q 022522 212 WVVN-LATSTMLFSILQLLWQAVFFMWHIYCVCFNVRTDEWVNWKKYP 258 (296)
Q Consensus 212 ~~~~-~~~~~~~~~~~~~i~v~~Ll~~q~~lI~~n~TT~E~~~~~r~~ 258 (296)
.... +++..+++...+..|.-.....+.+++.+++++-|.....|.+
T Consensus 201 ~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~ 248 (309)
T COG5273 201 LGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRES 248 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccC
Confidence 2221 3344455556667777788899999999999999998866666
No 29
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=46.20 E-value=15 Score=24.62 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=15.6
Q ss_pred CCCCCCCCC--CCCCCccccccCccc
Q 022522 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (296)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (296)
+-|..|... .-.|.|||+.|++-+
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~ 28 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIF 28 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCc
Confidence 346666543 355788899887753
No 30
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=45.71 E-value=87 Score=23.69 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHHHH
Q 022522 44 SPFIVQFALSGLVLLLVQ 61 (296)
Q Consensus 44 ~~~~~~lpl~~~~~~~~~ 61 (296)
++.+.+.|+|++++++..
T Consensus 64 l~t~~Af~~Ai~~Sl~~~ 81 (90)
T PF11674_consen 64 LNTFWAFPLAILISLAIT 81 (90)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 566778888888887763
No 31
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=43.32 E-value=12 Score=28.23 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=9.7
Q ss_pred cccCcccccCcee
Q 022522 173 GFDHHCPAFGNCI 185 (296)
Q Consensus 173 r~DHHCpWi~nCI 185 (296)
.+-.||||++.-.
T Consensus 53 eHr~~CPwv~~~~ 65 (91)
T PF08600_consen 53 EHREYCPWVNPST 65 (91)
T ss_pred cccccCCccCCcc
Confidence 3447899999765
No 32
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=42.11 E-value=11 Score=34.81 Aligned_cols=27 Identities=15% Similarity=0.114 Sum_probs=20.0
Q ss_pred CCCCCCCCC-CC--CCCCccccccCccccc
Q 022522 147 GVDPDNENS-LS--RKRVRYCKICKAHVEG 173 (296)
Q Consensus 147 ~~~C~~C~~-~k--P~Rs~HC~~C~~CV~r 173 (296)
..-|..|.. .. -.|=|||+.||.-|-.
T Consensus 168 a~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~ 197 (288)
T KOG1729|consen 168 ATECMVCGCTEFTLSERRHHCRNCGDIVCA 197 (288)
T ss_pred ceecccCCCccccHHHHHHHHHhcchHhhh
Confidence 467888877 32 3488999999987665
No 33
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=41.02 E-value=21 Score=21.46 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCC-Ccc-ccccC
Q 022522 149 DPDNENSLSRKR-VRY-CKICK 168 (296)
Q Consensus 149 ~C~~C~~~kP~R-s~H-C~~C~ 168 (296)
-|..|...+..+ +++ |+.|+
T Consensus 2 rC~vC~~~k~rk~T~~~C~~C~ 23 (32)
T PF13842_consen 2 RCKVCSKKKRRKDTRYMCSKCD 23 (32)
T ss_pred CCeECCcCCccceeEEEccCCC
Confidence 356666655554 433 77775
No 34
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=39.64 E-value=2.2e+02 Score=28.01 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHH---HHHhhhhhhcccccccchHHHHHHHHHHHHhhhhheecchh-hHH
Q 022522 29 LTQLTLSLVPRFFAASPFIVQFALSGLVLLLV---QTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVS-SLI 104 (296)
Q Consensus 29 ~p~~~l~~~~~~~~~~~~~~~lpl~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~f~~~~~w~~~~~~~~~~~~-~~~ 104 (296)
.|...|-...+.+.. ..+.+..++.+++++ +...+...+...++++-|.+.||...+....+.+--+-+.+ ...
T Consensus 7 i~la~LaT~gRm~~a--i~iSi~~~~~lAy~A~Ksk~~E~i~ip~ldVlqSVPVlgFfpi~l~~Fv~lfpG~lGvElAa~ 84 (523)
T COG4986 7 IPLALLATAGRMLLA--ILISILTGWFLAYAAIKSKRFENIYIPVLDVLQSVPVLGFFPIVLIFFVYLFPGPLGVELAAD 84 (523)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHhcCchheehhhhhhhhhhhcCcchhHHHHHH
Confidence 344444444444331 223444455555544 45666666666788999999988866655444331111111 112
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 022522 105 GGLFNIEVAMIIIGLCSIMSKDP 127 (296)
Q Consensus 105 ~~~f~~~~~~~~~~~~~~~~~dP 127 (296)
.++|+...--++.+.|++..+-|
T Consensus 85 FlvFTs~aWNi~fs~YQsFkTvP 107 (523)
T COG4986 85 FLVFTSVAWNIWFSEYQSFKTVP 107 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHccCC
Confidence 23333333334555666665554
No 35
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=36.91 E-value=4.1e+02 Score=25.89 Aligned_cols=32 Identities=6% Similarity=-0.051 Sum_probs=25.3
Q ss_pred CCCCCCCCCCCCCCCccccccCcccccccCcc
Q 022522 147 GVDPDNENSLSRKRVRYCKICKAHVEGFDHHC 178 (296)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC 178 (296)
-.-|++|....|....||..|+.-..+.+++.
T Consensus 221 l~~C~~Cd~l~~~~~a~CpRC~~~L~~~~~~s 252 (419)
T PRK15103 221 LRSCSCCTAILPADQPVCPRCHTKGYVRRRNS 252 (419)
T ss_pred CCcCCCCCCCCCCCCCCCCCCCCcCcCCCCCC
Confidence 35699999988877778999998876666643
No 36
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=36.07 E-value=70 Score=28.45 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccCCCCC
Q 022522 108 FNIEVAMIIIGLCSIMSKDPGLITNEFP 135 (296)
Q Consensus 108 f~~~~~~~~~~~~~~~~~dPG~vp~~~~ 135 (296)
..++.+.+.-+|..+...|||......+
T Consensus 200 itl~vf~LvgLyr~C~k~dPg~p~~g~~ 227 (259)
T PF07010_consen 200 ITLSVFTLVGLYRMCWKTDPGTPENGPD 227 (259)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcccCCC
Confidence 3334455556777789999996655443
No 37
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=34.78 E-value=1.4e+02 Score=23.22 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=30.4
Q ss_pred HHHHHHHH--HHHHHhccchHH-HHHHHHHHHHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHhhhhh
Q 022522 28 LLTQLTLS--LVPRFFAASPFI-VQFALSGLVLLLVQTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAV 95 (296)
Q Consensus 28 ~~p~~~l~--~~~~~~~~~~~~-~~lpl~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~w~~~~~~ 95 (296)
-.|+++-+ ..+.++..-|.+ +.+|++++++.+...+.+--. +-..+.-.+..+.++|..+.|+
T Consensus 40 aiPfl~YG~nTLfFfLYTWPFFLALmPvsVl~Gi~l~~ll~g~l-----~~s~~~t~l~V~~lFwllF~~L 105 (107)
T PF12084_consen 40 AIPFLVYGSNTLFFFLYTWPFFLALMPVSVLIGIALSSLLRGKL-----LWSLLATGLAVGCLFWLLFSWL 105 (107)
T ss_pred hhHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcE-----eeehhhHHHHHHHHHHHHHHHH
Confidence 34444443 223334445555 358999998866532211111 1111222245567778766654
No 38
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=32.52 E-value=24 Score=24.73 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCCCccccccCc
Q 022522 148 VDPDNENSLSRKRVRYCKICKA 169 (296)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~~ 169 (296)
+-|..|+...|.-++-|+.|+.
T Consensus 5 kAC~~Ck~l~~~d~e~CP~Cgs 26 (64)
T COG2093 5 KACKNCKRLTPEDTEICPVCGS 26 (64)
T ss_pred HHHhhccccCCCCCccCCCCCC
Confidence 4588999889999999998886
No 39
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.67 E-value=19 Score=36.63 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=17.8
Q ss_pred CCCCCCCCC--CCCCCccccccCc
Q 022522 148 VDPDNENSL--SRKRVRYCKICKA 169 (296)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~ 169 (296)
.-|..|.+. ---|+|||+.||+
T Consensus 166 ~~C~rCr~~F~~~~rkHHCr~CG~ 189 (634)
T KOG1818|consen 166 EECLRCRVKFGLTNRKHHCRNCGQ 189 (634)
T ss_pred cccceeeeeeeeccccccccccch
Confidence 558888876 3459999999998
No 40
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=29.63 E-value=23 Score=31.66 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=12.4
Q ss_pred cCcccccccCcccccC
Q 022522 167 CKAHVEGFDHHCPAFG 182 (296)
Q Consensus 167 C~~CV~r~DHHCpWi~ 182 (296)
|---..+.+|||||..
T Consensus 34 C~eHrsye~H~Cp~~~ 49 (250)
T KOG3183|consen 34 CLEHRSYESHHCPKGL 49 (250)
T ss_pred hhccchHhhcCCCccc
Confidence 3345678999999986
No 41
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=29.62 E-value=19 Score=22.07 Aligned_cols=9 Identities=11% Similarity=-0.260 Sum_probs=5.7
Q ss_pred CCCCCCCCC
Q 022522 148 VDPDNENSL 156 (296)
Q Consensus 148 ~~C~~C~~~ 156 (296)
+||++|.-.
T Consensus 2 ~FCp~C~nl 10 (35)
T PF02150_consen 2 RFCPECGNL 10 (35)
T ss_dssp -BETTTTSB
T ss_pred eeCCCCCcc
Confidence 577777755
No 42
>PF00751 DM: DM DNA binding domain; InterPro: IPR001275 This domain was first discovered in the doublesex proteins of Drosophila melanogaster and is also seen in proteins from Caenorhabditis elegans []. In D. melanogaster the doublesex gene controls somatic sexual differentiation by producing alternatively spliced mRNAs encoding related sex-specific polypeptides []. These proteins are believed to function as transcription factors on downstream sex-determination genes, especially on neuroblast differentiation and yolk protein genes transcription [, ]. The DM domain binds DNA as a dimer, allowing the recognition of pseudopalindromic sequences [, , ]. The NMR analysis of the DSX DM domain [] revealed a novel zinc module containing 'intertwined' CCHC and HCCC zinc-binding sites. The recognition of the DNA requires the carboxy-terminal basic tail which contacts the minor groove of the target sequence.; GO: 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007548 sex differentiation, 0005634 nucleus; PDB: 1LPV_A.
Probab=29.45 E-value=20 Score=23.67 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=9.2
Q ss_pred Ccccccc---CcccccccC--cccccC
Q 022522 161 VRYCKIC---KAHVEGFDH--HCPAFG 182 (296)
Q Consensus 161 s~HC~~C---~~CV~r~DH--HCpWi~ 182 (296)
+.+|..| |.-+..-+| .|||-+
T Consensus 2 ~p~C~RCrnHG~~~~lKgHk~~C~~~~ 28 (47)
T PF00751_consen 2 SPTCARCRNHGVIVPLKGHKRYCPFRD 28 (47)
T ss_dssp -SS-HHHHTTT---TTTT-GGG-TTTT
T ss_pred CCcCcchhcCCcccchhhhccccCcCC
Confidence 3445555 445566666 699865
No 43
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=29.25 E-value=34 Score=22.36 Aligned_cols=10 Identities=0% Similarity=-0.337 Sum_probs=6.4
Q ss_pred CCCCCCCCCC
Q 022522 148 VDPDNENSLS 157 (296)
Q Consensus 148 ~~C~~C~~~k 157 (296)
+||+.|....
T Consensus 1 ~FCp~Cg~~l 10 (52)
T smart00661 1 KFCPKCGNML 10 (52)
T ss_pred CCCCCCCCcc
Confidence 4677776654
No 44
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=27.14 E-value=22 Score=29.38 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=12.5
Q ss_pred CCccccccCcccccc
Q 022522 160 RVRYCKICKAHVEGF 174 (296)
Q Consensus 160 Rs~HC~~C~~CV~r~ 174 (296)
..+||..|..|+.|.
T Consensus 150 ~~~~CG~C~~C~~r~ 164 (169)
T cd01995 150 GEKHCGECDSCLLRK 164 (169)
T ss_pred CCCCCCCCHHHHHHH
Confidence 338999999999875
No 45
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=27.03 E-value=68 Score=33.11 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCCCccccccCcccccccCcccccCcee
Q 022522 147 GVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCI 185 (296)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpWi~nCI 185 (296)
.+||..|... ...+.|..|+.=+..=..+||=-|.=.
T Consensus 15 akFC~~CG~~--l~~~~Cp~CG~~~~~~~~fC~~CG~~~ 51 (645)
T PRK14559 15 NRFCQKCGTS--LTHKPCPQCGTEVPVDEAHCPNCGAET 51 (645)
T ss_pred CccccccCCC--CCCCcCCCCCCCCCcccccccccCCcc
Confidence 3555555432 223445555555555555555433333
No 46
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=26.87 E-value=3.3e+02 Score=26.71 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhcCCCccC
Q 022522 111 EVAMIIIGLCSIMSKDPGLIT 131 (296)
Q Consensus 111 ~~~~~~~~~~~~~~~dPG~vp 131 (296)
+..+|-|.-+..+..|++.+.
T Consensus 184 C~~~CP~g~~qs~m~d~~tl~ 204 (434)
T TIGR02745 184 CIYMCPYARIQSVMFDKDTLI 204 (434)
T ss_pred hhhhCCHHHHHHHhccCCcce
Confidence 455666666666677776543
No 47
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=26.87 E-value=38 Score=18.77 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCccccccCc
Q 022522 149 DPDNENSLSRKRVRYCKICKA 169 (296)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~~ 169 (296)
.|..|......++..|..|+.
T Consensus 4 ~C~~C~~~N~~~~~~C~~C~~ 24 (26)
T smart00547 4 ECPACTFLNFASRSKCFACGA 24 (26)
T ss_pred cCCCCCCcChhhhccccccCC
Confidence 588888888888888888864
No 48
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.69 E-value=18 Score=34.62 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=18.9
Q ss_pred CCCCCccccccCcccccccCcccccCceecch
Q 022522 157 SRKRVRYCKICKAHVEGFDHHCPAFGNCIEAS 188 (296)
Q Consensus 157 kP~Rs~HC~~C~~CV~r~DHHCpWi~nCIG~~ 188 (296)
+-.|-.||-.|+ .+|| +|+.||||..
T Consensus 10 sl~~p~l~~tC~----e~~h--~w~~~c~ga~ 35 (460)
T KOG1398|consen 10 SLARPSLAETCD----EADH--SWVANCIGAL 35 (460)
T ss_pred hhcCchHhhhhh----hccC--CcccchhHHH
Confidence 344556777775 4788 7999999885
No 49
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=25.26 E-value=46 Score=22.17 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=14.5
Q ss_pred CCCCCCCCCC-C--CCCCCccccccCc
Q 022522 146 LGVDPDNENS-L--SRKRVRYCKICKA 169 (296)
Q Consensus 146 ~~~~C~~C~~-~--kP~Rs~HC~~C~~ 169 (296)
..++|+.|.. . .-....+|..|+.
T Consensus 19 ~~~fCP~Cg~~~m~~~~~r~~C~~Cgy 45 (50)
T PRK00432 19 KNKFCPRCGSGFMAEHLDRWHCGKCGY 45 (50)
T ss_pred ccCcCcCCCcchheccCCcEECCCcCC
Confidence 3579999977 2 1223456776653
No 50
>PF04161 Arv1: Arv1-like family ; InterPro: IPR007290 Arv1 is a transmembrane protein, with potential zinc-binding motifs, that mediates sterol homeostasis. Its action is important in lipid homeostasis, which prevents free sterol toxicity []. Arv1 contains a homology domain (AHD), which consists of an N-terminal cysteine-rich subdomain with a putative zinc-binding motif, followed by a C-terminal subdomain of 33 amino acids. The C-terminal subdomain of the AHD is critical for the protein's function []. In yeast, Arv1p is important for the delivery of an early glycosylphosphatidylinositol GPI intermediate, GlcN-acylPI, to the first mannosyltransferase of GPI synthesis in the ER lumen []. It is important for the traffic of sterol in yeast and in humans. In eukaryotic cells, it may fuction in the sphingolipid metabolic pathway as a transporter of ceramides between the ER and Golgi [].
Probab=24.53 E-value=28 Score=30.37 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=17.4
Q ss_pred CCCCCCCCC----------CCCccccccCcccccc
Q 022522 150 PDNENSLSR----------KRVRYCKICKAHVEGF 174 (296)
Q Consensus 150 C~~C~~~kP----------~Rs~HC~~C~~CV~r~ 174 (296)
|.+|..+.+ .|=-+|+.||+.+.|+
T Consensus 3 CIeCg~~v~~Ly~~Ys~~~irLt~C~~C~~vaDkY 37 (208)
T PF04161_consen 3 CIECGHPVKSLYRQYSPGNIRLTKCPNCGKVADKY 37 (208)
T ss_pred eccCCCcchhhhhccCCCcEEEeeccccCCcccce
Confidence 666666543 4667888998887664
No 51
>COG4640 Predicted membrane protein [Function unknown]
Probab=24.52 E-value=42 Score=32.30 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCCCCccccccCcccc
Q 022522 148 VDPDNENSLSRKRVRYCKICKAHVE 172 (296)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~~CV~ 172 (296)
+||+.|...+-.-+..|..||.=+-
T Consensus 2 ~fC~kcG~qk~Ed~~qC~qCG~~~t 26 (465)
T COG4640 2 KFCPKCGSQKAEDDVQCTQCGHKFT 26 (465)
T ss_pred CcccccccccccccccccccCCcCC
Confidence 6899999999999988998887543
No 52
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=24.40 E-value=47 Score=34.27 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCCCccccccCcccccccCcccccCc
Q 022522 148 VDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGN 183 (296)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpWi~n 183 (296)
..|+.|....|..+|.|..|+.=... ..||=-|.
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l~~--~~Cp~CG~ 35 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSLTH--KPCPQCGT 35 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCCCC--CcCCCCCC
Confidence 46888888888888888888774421 34654443
No 53
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=23.80 E-value=39 Score=19.97 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=9.9
Q ss_pred CCCCCCCCCC-CCC---CCccccccC
Q 022522 147 GVDPDNENSL-SRK---RVRYCKICK 168 (296)
Q Consensus 147 ~~~C~~C~~~-kP~---Rs~HC~~C~ 168 (296)
.+||..|... ++. +++.|..|+
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg 28 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCG 28 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS
T ss_pred CcccCcCCccccCCCCcCEeECCCCc
Confidence 4788888876 333 444555544
No 54
>smart00423 PSI domain found in Plexins, Semaphorins and Integrins.
Probab=22.92 E-value=34 Score=21.95 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=10.2
Q ss_pred cccCcccccccCccccc
Q 022522 165 KICKAHVEGFDHHCPAF 181 (296)
Q Consensus 165 ~~C~~CV~r~DHHCpWi 181 (296)
+.|..|+...|-||-|=
T Consensus 5 ~sC~~C~~~~~~~C~Wc 21 (46)
T smart00423 5 TSCSECLLARDPYCAWC 21 (46)
T ss_pred CcHHHHHcCCCCCCCcc
Confidence 45666666666666664
No 55
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=22.92 E-value=40 Score=26.35 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCC----CCCccccccCc
Q 022522 147 GVDPDNENSLSR----KRVRYCKICKA 169 (296)
Q Consensus 147 ~~~C~~C~~~kP----~Rs~HC~~C~~ 169 (296)
.-.|..|...+- =|++||+.|+.
T Consensus 42 ~~~C~~Cg~~~~~~~SCk~R~CP~C~~ 68 (111)
T PF14319_consen 42 RYRCEDCGHEKIVYNSCKNRHCPSCQA 68 (111)
T ss_pred eeecCCCCceEEecCcccCcCCCCCCC
Confidence 355888877652 25667777765
No 56
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=22.67 E-value=30 Score=34.28 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=15.4
Q ss_pred CCCCCCCCCC--CCCCccccccCc
Q 022522 148 VDPDNENSLS--RKRVRYCKICKA 169 (296)
Q Consensus 148 ~~C~~C~~~k--P~Rs~HC~~C~~ 169 (296)
..|..|+..- --|-|||+-|+.
T Consensus 902 ~~cmacq~pf~afrrrhhcrncgg 925 (990)
T KOG1819|consen 902 EQCMACQMPFNAFRRRHHCRNCGG 925 (990)
T ss_pred hhhhhccCcHHHHHHhhhhcccCc
Confidence 5577777542 237899998887
No 57
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=22.65 E-value=40 Score=30.66 Aligned_cols=15 Identities=13% Similarity=-0.177 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCCC
Q 022522 147 GVDPDNENSLSRKRV 161 (296)
Q Consensus 147 ~~~C~~C~~~kP~Rs 161 (296)
..||+.|+...|.||
T Consensus 255 ty~Cp~CQ~~~~~~~ 269 (269)
T PRK14811 255 THFCPQCQPLRPLRS 269 (269)
T ss_pred cEECCCCcCCCCCCC
Confidence 489999999999997
No 58
>PRK10726 hypothetical protein; Provisional
Probab=22.50 E-value=3.7e+02 Score=20.83 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=19.9
Q ss_pred HHHHHHHHH--HHHHHhccchHH-HHHHHHHHHHHHH
Q 022522 27 VLLTQLTLS--LVPRFFAASPFI-VQFALSGLVLLLV 60 (296)
Q Consensus 27 f~~p~~~l~--~~~~~~~~~~~~-~~lpl~~~~~~~~ 60 (296)
|-.|++.-+ ..+.++..=|.+ +.+|++++++.+.
T Consensus 36 ~aiPfl~YG~nTlfF~LYTWPFFLALmPvsVlvGi~l 72 (105)
T PRK10726 36 LAIPFLIYGSNTLFFFLYTWPFFLALMPVSVLVGIAL 72 (105)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344555554 334444445555 4589999888665
No 59
>PF01437 PSI: Plexin repeat; InterPro: IPR002165 This is a cysteine rich repeat found in several different extracellular receptors. The function of the repeat is unknown. Three copies of the repeat are found in plexin (P70206 from SWISSPROT) []. Two copies of the repeat are found in mahogany protein. A related Caenorhabditis elegans protein (Q19981 from SWISSPROT) contains four copies of the repeat, while the Met receptor contains a single copy of the repeat.; GO: 0016020 membrane; PDB: 3NVQ_B 3NVN_B 3OL2_B 3OKT_A 3AL8_A 3OKW_A 3OKY_B 3AFC_B 1OLZ_B 1SHY_B ....
Probab=22.46 E-value=20 Score=23.68 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=13.6
Q ss_pred cccCcccccccCcccccC
Q 022522 165 KICKAHVEGFDHHCPAFG 182 (296)
Q Consensus 165 ~~C~~CV~r~DHHCpWi~ 182 (296)
..|..|+.-.|-+|.|-.
T Consensus 6 ~sC~~Cl~~~dp~CgWc~ 23 (51)
T PF01437_consen 6 TSCSSCLSSRDPYCGWCS 23 (51)
T ss_dssp SSHHHHHHSTCTTEEEET
T ss_pred CcHHHHHcCCCcCccccC
Confidence 677888888887888754
No 60
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=22.42 E-value=3.5e+02 Score=27.62 Aligned_cols=31 Identities=13% Similarity=-0.043 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCCCCCccccccCcccccccCc
Q 022522 147 GVDPDNENSLSRKRVRYCKICKAHVEGFDHH 177 (296)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHH 177 (296)
.+.|..|+.-.--=-|||..=++||-+-.|+
T Consensus 434 Skhc~vcnrcVarfDHhCPwi~ncVG~kNh~ 464 (600)
T KOG0509|consen 434 SKHCSVCNRCVARFDHHCPWIGNCVGLKNHR 464 (600)
T ss_pred cchhhhhHHHHhccccCCCccccccCccchH
Confidence 3556666655555556666666666655553
No 61
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=21.87 E-value=41 Score=26.42 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCCCCCcc---ccccCc
Q 022522 146 LGVDPDNENSLSRKRVRY---CKICKA 169 (296)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~H---C~~C~~ 169 (296)
..-+|..|...-|....+ |+.|+.
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs 95 (114)
T PRK03681 69 AECWCETCQQYVTLLTQRVRRCPQCHG 95 (114)
T ss_pred cEEEcccCCCeeecCCccCCcCcCcCC
Confidence 357899999887765444 888874
No 62
>PF14127 DUF4294: Domain of unknown function (DUF4294)
Probab=21.33 E-value=76 Score=26.58 Aligned_cols=32 Identities=6% Similarity=0.075 Sum_probs=26.1
Q ss_pred HhChhhHHhhhccCCCccccccCCCCCcccCCCccCCCCHhHHHHHHHhcCCC
Q 022522 243 CFNVRTDEWVNWKKYPEFQVIESEPGESFTRMRFTNPYDKGFLQNVKDFLSLR 295 (296)
Q Consensus 243 ~~n~TT~E~~~~~r~~~~~~~~~~~~~~~~~~~~~npyd~G~~~Nl~effg~~ 295 (296)
-.|.|++|.++ ...+++.-|++++...+||-+
T Consensus 103 etg~TsyelIK---------------------~~rgg~~A~~~q~~A~~Fg~s 134 (157)
T PF14127_consen 103 ETGSTSYELIK---------------------ELRGGWRAFWYQTFAWLFGIS 134 (157)
T ss_pred hcCCcHHHHHH---------------------HhhCChhHHHHHHHHHHhCcc
Confidence 46999999986 356888899999988888853
No 63
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=20.92 E-value=47 Score=28.37 Aligned_cols=13 Identities=15% Similarity=0.255 Sum_probs=11.1
Q ss_pred CccccccCccccc
Q 022522 161 VRYCKICKAHVEG 173 (296)
Q Consensus 161 s~HC~~C~~CV~r 173 (296)
.+||..|..|+.|
T Consensus 189 ~~~CG~C~~C~~r 201 (201)
T TIGR00364 189 GEGCGKCPSCMLR 201 (201)
T ss_pred CCCCCCChhhhcc
Confidence 4699999999875
No 64
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=20.73 E-value=40 Score=19.55 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=7.6
Q ss_pred CCCCCCCCCCC-CCccccccCc
Q 022522 149 DPDNENSLSRK-RVRYCKICKA 169 (296)
Q Consensus 149 ~C~~C~~~kP~-Rs~HC~~C~~ 169 (296)
.|..|+..... ...+|..|+-
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf 23 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDF 23 (30)
T ss_dssp --TTTS----S--EEE-TTT--
T ss_pred cCCcCCCcCCCCceEECccCCC
Confidence 46667666555 5677777753
Done!