Query 022522
Match_columns 296
No_of_seqs 251 out of 1533
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:51:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 81.1 0.74 2.5E-05 30.6 1.8 28 146-173 18-45 (56)
2 1x4u_A Zinc finger, FYVE domai 73.9 2 6.8E-05 30.8 2.6 24 147-170 14-39 (84)
3 1z2q_A LM5-1; membrane protein 72.5 3.7 0.00013 29.4 3.8 25 147-171 21-47 (84)
4 3j21_g 50S ribosomal protein L 71.0 0.75 2.6E-05 30.1 -0.3 28 146-173 13-40 (51)
5 2yw8_A RUN and FYVE domain-con 68.3 2.5 8.5E-05 30.2 2.0 25 147-171 19-45 (82)
6 1vfy_A Phosphatidylinositol-3- 65.6 2.3 7.9E-05 29.6 1.4 24 148-171 12-37 (73)
7 3zyq_A Hepatocyte growth facto 64.8 5.5 0.00019 34.0 3.9 24 148-171 165-190 (226)
8 1dvp_A HRS, hepatocyte growth 62.8 2.8 9.6E-05 35.6 1.6 24 148-171 162-187 (220)
9 1joc_A EEA1, early endosomal a 61.7 2.8 9.4E-05 32.5 1.3 25 147-171 69-95 (125)
10 1y02_A CARP2, FYVE-ring finger 60.9 3 0.0001 32.2 1.3 24 147-170 19-44 (120)
11 1wfk_A Zinc finger, FYVE domai 59.8 4.7 0.00016 29.2 2.2 25 147-171 9-35 (88)
12 1wfl_A Zinc finger protein 216 57.3 14 0.00048 25.9 4.1 36 147-183 25-65 (74)
13 3t7l_A Zinc finger FYVE domain 52.5 5 0.00017 29.1 1.3 25 147-171 20-46 (90)
14 2cr8_A MDM4 protein; ZF-ranbp 39.9 12 0.00039 24.3 1.3 21 149-169 13-33 (53)
15 2dkt_A Ring finger and CHY zin 38.3 7.1 0.00024 31.0 0.2 27 146-172 82-109 (143)
16 2jrp_A Putative cytoplasmic pr 35.4 16 0.00054 26.1 1.6 18 150-168 21-38 (81)
17 2c6a_A Ubiquitin-protein ligas 34.7 15 0.00052 23.2 1.2 22 148-169 14-35 (46)
18 2elu_A Zinc finger protein 406 31.7 10 0.00036 22.0 0.1 8 162-169 10-17 (37)
19 3mpx_A FYVE, rhogef and PH dom 30.6 11 0.00036 35.0 0.0 23 148-170 376-400 (434)
20 1wil_A KIAA1045 protein; ring 27.0 59 0.002 23.3 3.4 25 146-170 14-38 (89)
21 2vrw_B P95VAV, VAV1, proto-onc 27.0 24 0.00083 32.2 1.8 25 147-171 357-384 (406)
22 3u5e_m 60S ribosomal protein L 25.8 22 0.00075 27.1 1.1 24 147-170 93-118 (128)
23 3jyw_9 60S ribosomal protein L 24.1 46 0.0016 23.1 2.3 26 147-172 26-55 (72)
24 1h7d_A Aminolevulinic acid syn 24.1 28 0.00095 22.3 1.1 14 172-185 5-18 (49)
25 3gj3_B Nuclear pore complex pr 22.5 39 0.0013 19.7 1.4 20 149-168 9-28 (33)
26 2knc_B Integrin beta-3; transm 22.3 84 0.0029 22.0 3.5 32 222-253 17-48 (79)
27 2pg3_A Queuosine biosynthesis 20.6 24 0.00083 29.5 0.4 18 157-174 191-208 (232)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=81.09 E-value=0.74 Score=30.57 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCCCCCccccccCccccc
Q 022522 146 LGVDPDNENSLSRKRVRYCKICKAHVEG 173 (296)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~r 173 (296)
....|..|..+-|+|+.-|+.|+..-+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 3578999999999999999999865443
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.87 E-value=2 Score=30.81 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=18.5
Q ss_pred CCCCCCCCCC--CCCCCccccccCcc
Q 022522 147 GVDPDNENSL--SRKRVRYCKICKAH 170 (296)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (296)
...|..|... --.|-|||+.|++-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 4678888875 44688999999874
No 3
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=72.49 E-value=3.7 Score=29.36 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=18.9
Q ss_pred CCCCCCCCCC--CCCCCccccccCccc
Q 022522 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (296)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (296)
...|..|... --.|-|||+.|++-+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccchhcccccCCCcEE
Confidence 4778888876 345789999998743
No 4
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.99 E-value=0.75 Score=30.05 Aligned_cols=28 Identities=7% Similarity=-0.063 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCCCCCccccccCccccc
Q 022522 146 LGVDPDNENSLSRKRVRYCKICKAHVEG 173 (296)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~r 173 (296)
..+.|..|..+.|.++..|+.|+.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 3578999999999999999999875443
No 5
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=68.27 E-value=2.5 Score=30.17 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=18.5
Q ss_pred CCCCCCCCCC--CCCCCccccccCccc
Q 022522 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (296)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (296)
...|..|... --.|-|||+.||+-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 4678888875 345789999998754
No 6
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=65.63 E-value=2.3 Score=29.60 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=17.3
Q ss_pred CCCCCCCCC--CCCCCccccccCccc
Q 022522 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (296)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (296)
.-|..|... --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 358888765 335789999998743
No 7
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.77 E-value=5.5 Score=33.99 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=17.0
Q ss_pred CCCCCCCCC--CCCCCccccccCccc
Q 022522 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (296)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (296)
.-|..|... --.|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 568888754 234779999988754
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.78 E-value=2.8 Score=35.58 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=17.9
Q ss_pred CCCCCCCCC--CCCCCccccccCccc
Q 022522 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (296)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (296)
..|..|... --.|-||||.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 678888765 335889999998754
No 9
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.67 E-value=2.8 Score=32.54 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=18.4
Q ss_pred CCCCCCCCCC--CCCCCccccccCccc
Q 022522 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (296)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (296)
...|..|... --.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 3678888775 346889999998743
No 10
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=60.93 E-value=3 Score=32.19 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=17.7
Q ss_pred CCCCCCCCCC--CCCCCccccccCcc
Q 022522 147 GVDPDNENSL--SRKRVRYCKICKAH 170 (296)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (296)
...|..|... -..|-|||+.||+.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred cCcccCcCCccccccccccCCCCCCe
Confidence 3678888775 34588999999874
No 11
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=59.83 E-value=4.7 Score=29.16 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=18.4
Q ss_pred CCCCCCCCCC--CCCCCccccccCccc
Q 022522 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (296)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (296)
...|..|... --.|-|||+.|++-+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEE
Confidence 3568888875 346789999998743
No 12
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=57.34 E-value=14 Score=25.87 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCCCCccccccCcc-----cccccCcccccCc
Q 022522 147 GVDPDNENSLSRKRVRYCKICKAH-----VEGFDHHCPAFGN 183 (296)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~C~~C-----V~r~DHHCpWi~n 183 (296)
.+-|..|+...-+=...|+ |+.- -.-=||.|++-+.
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk 65 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYK 65 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGG
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhh
Confidence 4679999886444457788 7652 2333899987543
No 13
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=52.51 E-value=5 Score=29.11 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=17.7
Q ss_pred CCCCCCCCCC--CCCCCccccccCccc
Q 022522 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (296)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (296)
...|..|... --.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 3568888764 234779999998743
No 14
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=39.91 E-value=12 Score=24.27 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCccccccCc
Q 022522 149 DPDNENSLSRKRVRYCKICKA 169 (296)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~~ 169 (296)
-|..|+..-||--.||..|-+
T Consensus 13 kC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTCC
T ss_pred ecccccccCCCccchhHHHHH
Confidence 377777777777777766654
No 15
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=38.28 E-value=7.1 Score=31.00 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCCC-ccccccCcccc
Q 022522 146 LGVDPDNENSLSRKRV-RYCKICKAHVE 172 (296)
Q Consensus 146 ~~~~C~~C~~~kP~Rs-~HC~~C~~CV~ 172 (296)
+..||..|+.+.+.+. .||..||-|-.
T Consensus 82 ~~Y~C~~C~l~d~~k~~yHC~~CgiCR~ 109 (143)
T 2dkt_A 82 GEYYCSICHLFDKDKRQYHCESCGICRI 109 (143)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEE
T ss_pred eeeEeceeecccCCCceecCCCCCceec
Confidence 3467888877654432 55555555544
No 16
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=35.41 E-value=16 Score=26.08 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCccccccC
Q 022522 150 PDNENSLSRKRVRYCKICK 168 (296)
Q Consensus 150 C~~C~~~kP~Rs~HC~~C~ 168 (296)
|..|...-+..+ .|..|+
T Consensus 21 C~~C~~~~~~~a-fCPeCg 38 (81)
T 2jrp_A 21 CETCAKDFSLQA-LCPDCR 38 (81)
T ss_dssp CTTTCCEEEEEE-ECSSSC
T ss_pred CccccccCCCcc-cCcchh
Confidence 444444433333 444443
No 17
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=34.66 E-value=15 Score=23.17 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCCCCccccccCc
Q 022522 148 VDPDNENSLSRKRVRYCKICKA 169 (296)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~~ 169 (296)
=-|..|+..-||--.||..|-+
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTCC
T ss_pred EecccccccCCCccchhhHHHh
Confidence 4488888887777777777654
No 18
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=31.70 E-value=10 Score=22.04 Aligned_cols=8 Identities=38% Similarity=1.198 Sum_probs=6.5
Q ss_pred ccccccCc
Q 022522 162 RYCKICKA 169 (296)
Q Consensus 162 ~HC~~C~~ 169 (296)
.|||.|++
T Consensus 10 qhcrfckk 17 (37)
T 2elu_A 10 QHCRFCKK 17 (37)
T ss_dssp CEETTTTE
T ss_pred HHHHHHHH
Confidence 58999886
No 19
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=30.62 E-value=11 Score=34.97 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCCCCCCCC--CCCCCccccccCcc
Q 022522 148 VDPDNENSL--SRKRVRYCKICKAH 170 (296)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~C 170 (296)
.-|..|... --.|-|||+.||+.
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp -------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCE
Confidence 457777653 22366888888764
No 20
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=27.03 E-value=59 Score=23.31 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCCCCCccccccCcc
Q 022522 146 LGVDPDNENSLSRKRVRYCKICKAH 170 (296)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~C 170 (296)
.+..|..|..+.-.----||+|+|+
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rv 38 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRV 38 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSC
T ss_pred CCcccCccccccccceecccccccc
Confidence 4578999998875555669999996
No 21
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=26.95 E-value=24 Score=32.23 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=18.4
Q ss_pred CCCCCCCCCCC---CCCCccccccCccc
Q 022522 147 GVDPDNENSLS---RKRVRYCKICKAHV 171 (296)
Q Consensus 147 ~~~C~~C~~~k---P~Rs~HC~~C~~CV 171 (296)
..+|..|...- -.|-+||+.|+..|
T Consensus 357 ~t~C~~C~~~~~g~~~qg~~C~~C~~~~ 384 (406)
T 2vrw_B 357 TTSCKACQMLLRGTFYQGYRCYRCRAPA 384 (406)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEE
T ss_pred CCCCccccchhceeCCCCCCCCCCcCcc
Confidence 58899998753 34779999886533
No 22
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=25.80 E-value=22 Score=27.09 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCCCCccccc--cCcc
Q 022522 147 GVDPDNENSLSRKRVRYCKI--CKAH 170 (296)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~--C~~C 170 (296)
...|..|..+-|+|++.|+. |+..
T Consensus 93 ~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 93 KSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp CEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred eEeeccccccCCchhhccchhhCCCc
Confidence 58899999999999999994 8764
No 23
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=24.08 E-value=46 Score=23.07 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCCCCC----ccccccCcccc
Q 022522 147 GVDPDNENSLSRKRV----RYCKICKAHVE 172 (296)
Q Consensus 147 ~~~C~~C~~~kP~Rs----~HC~~C~~CV~ 172 (296)
...|+.|...+-.|. .||+.|++=++
T Consensus 26 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp CBCCSSCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred CccCCCCCCceeEecCCCeEECCCCCCEEe
Confidence 477999988777764 58999988665
No 24
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=24.06 E-value=28 Score=22.31 Aligned_cols=14 Identities=14% Similarity=0.301 Sum_probs=11.1
Q ss_pred ccccCcccccCcee
Q 022522 172 EGFDHHCPAFGNCI 185 (296)
Q Consensus 172 ~r~DHHCpWi~nCI 185 (296)
+.++|+||+++.+=
T Consensus 5 a~~l~~CPFL~R~p 18 (49)
T 1h7d_A 5 AMLLRSCPVLSQGP 18 (49)
T ss_dssp SCSCCSCCCCSSCS
T ss_pred hhhhccCCchhcCC
Confidence 46789999998764
No 25
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=22.46 E-value=39 Score=19.66 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCCccccccC
Q 022522 149 DPDNENSLSRKRVRYCKICK 168 (296)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~ 168 (296)
-|..|..+-++.+.+|-.|+
T Consensus 9 ~C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 9 DCDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp ECTTTCCEECTTCSBCTTTC
T ss_pred eCCcccCCCccccCEEcccC
Confidence 37777777777777777775
No 26
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.35 E-value=84 Score=22.00 Aligned_cols=32 Identities=9% Similarity=0.267 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 022522 222 LFSILQLLWQAVFFMWHIYCVCFNVRTDEWVN 253 (296)
Q Consensus 222 ~~~~~~~i~v~~Ll~~q~~lI~~n~TT~E~~~ 253 (296)
+.+.+.++.+..|+++.+.......-.++...
T Consensus 17 vi~gilliGllllliwk~~~~i~DrrE~~kFE 48 (79)
T 2knc_B 17 VMGAILLIGLAALLIWKLLITIHDRKEFAKFE 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566666665555555555544
No 27
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=20.63 E-value=24 Score=29.47 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=14.2
Q ss_pred CCCCCccccccCcccccc
Q 022522 157 SRKRVRYCKICKAHVEGF 174 (296)
Q Consensus 157 kP~Rs~HC~~C~~CV~r~ 174 (296)
.+.|.+||..|..|..|.
T Consensus 191 ~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TSCCTTTTSCSHHHHHHH
T ss_pred CCCCCCcCCcCHhHHHHH
Confidence 455568999999998775
Done!