BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022524
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QVB|A Chain A, Crystal Structure Of The Beta-Glycosidase From The
Hyperthermophile Thermosphaera Aggregans
pdb|1QVB|B Chain B, Crystal Structure Of The Beta-Glycosidase From The
Hyperthermophile Thermosphaera Aggregans
Length = 481
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 13 TESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAAD 72
++SRDA R A + + + S ++A+ + +P Y S+ Y A Q + +V D
Sbjct: 390 SDSRDALRPAYLVSHVYSVWKAANEGIPVKGYLHWSLTDNYEWA---QGFRQKFGLVMVD 446
Query: 73 FRQKAAEYRSQAARIREILENVGLAQE 99
F+ K R A REI + G+ E
Sbjct: 447 FKTKKRYLRPSALVFREIATHNGIPDE 473
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 40/148 (27%)
Query: 130 LVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEA-- 187
L+ + + + K ++E++ +Q+E++ L++ RK A LG APC
Sbjct: 110 LMTLRNFGMGKRSIEDR---IQEEARCLVEELRKTNASPCDPTFILG-----CAPCNVIC 161
Query: 188 -----------------QMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGV 230
ME+ N+ ++ + +LQ YNN+ ALL+ Y P I H
Sbjct: 162 SVIFHNRFDYKDEEFLKLMESLHENVELLGTP---WLQVYNNFPALLD---YFPGI-HKT 214
Query: 231 LVEMAEHRKELEKKTKPILDTLRSYQDL 258
L++ A++ K I++ ++ +Q L
Sbjct: 215 LLKNADYIKNF------IMEKVKEHQKL 236
>pdb|2AAZ|A Chain A, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|B Chain B, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|C Chain C, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|D Chain D, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|E Chain E, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|F Chain F, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|G Chain G, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|H Chain H, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|I Chain I, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|J Chain J, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|K Chain K, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|L Chain L, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|M Chain M, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|N Chain N, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|O Chain O, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|P Chain P, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
Length = 317
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 93 NVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQK 152
++GL +P N+ S A +L ++ L I DTE F++ MGD + + VE + ++++
Sbjct: 219 DLGLG---VPFNIASYA-LLTHMIAL--ITDTEPHEFILQMGDAHVYRDHVEPLKTQLER 272
Query: 153 ESKILLDYTRKAIAR 167
E + D+ + AR
Sbjct: 273 EPR---DFPKLKWAR 284
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 191 NWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEH--------RKELE 242
+ K ++ + ER++ + +Y+ L +R+G TP + + ++ H R +L+
Sbjct: 243 DGKKDITAALAAERKFFLSHPSYRHLADRMG-TPYLQKVLNQQLTNHIRDTLPGLRNKLQ 301
Query: 243 KKTKPILDTLRSYQDLPPDKXXXXXXIEDKKRQYAAAEKYL 283
+ I + Y++ PDK +++ R Y A ++ L
Sbjct: 302 SQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKEAL 342
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 191 NWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEH--------RKELE 242
+ K ++ + ER++ + +Y+ L +R G TP + + ++ H R +L+
Sbjct: 243 DGKKDITAALAAERKFFLSHPSYRHLADRXG-TPYLQKVLNQQLTNHIRDTLPGLRNKLQ 301
Query: 243 KKTKPILDTLRSYQDLPPDKXXXXXXIEDKKRQYAAAEKYL 283
+ I + Y++ PDK +++ R Y A ++ L
Sbjct: 302 SQLLSIEKEVEEYKNFRPDKHGTDSRVDEXLRXYHALKEAL 342
>pdb|2WY4|A Chain A, Structure Of Bacterial Globin From Campylobacter Jejuni At
1.35 A Resolution
Length = 140
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 93 NVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEK 146
N+G+ +E P + A +L + NLLN + L ++ VA G I+ +E+K
Sbjct: 86 NLGVKEEHYP---IVGACLLKAIKNLLNPDEATLKAWEVAYGKIAKFYIDIEKK 136
>pdb|2ZME|A Chain A, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
Length = 258
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 162 RKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214
+K +A Y +R ED +A Q++ +KTNL ASK +Q +++ ++
Sbjct: 13 KKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFR 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,151,842
Number of Sequences: 62578
Number of extensions: 241499
Number of successful extensions: 539
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 20
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)