Query 022524
Match_columns 295
No_of_seqs 93 out of 106
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:12:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09039 hypothetical protein; 95.5 2 4.3E-05 41.9 18.9 144 126-279 34-184 (343)
2 PF14735 HAUS4: HAUS augmin-li 95.4 2.3 4.9E-05 39.6 19.0 111 165-286 109-228 (238)
3 COG3883 Uncharacterized protei 95.2 1.7 3.7E-05 41.0 16.6 85 199-290 124-209 (265)
4 PRK11637 AmiB activator; Provi 94.6 5.2 0.00011 39.7 19.6 18 140-157 49-66 (428)
5 PHA02562 46 endonuclease subun 94.3 6.9 0.00015 39.6 19.9 14 20-33 111-124 (562)
6 TIGR02168 SMC_prok_B chromosom 93.7 13 0.00028 40.6 22.2 20 266-285 921-940 (1179)
7 COG4942 Membrane-bound metallo 92.9 11 0.00025 37.8 19.2 100 176-282 83-193 (420)
8 KOG0995 Centromere-associated 92.8 4.9 0.00011 41.7 15.6 63 229-292 301-364 (581)
9 COG1196 Smc Chromosome segrega 92.7 21 0.00045 40.2 24.0 46 240-288 946-991 (1163)
10 PRK04778 septation ring format 92.6 3.9 8.4E-05 42.3 15.0 142 139-283 276-434 (569)
11 PRK09039 hypothetical protein; 92.6 7.6 0.00017 37.8 16.2 98 112-216 62-159 (343)
12 KOG0996 Structural maintenance 92.3 20 0.00043 40.4 20.0 149 136-290 797-965 (1293)
13 TIGR03185 DNA_S_dndD DNA sulfu 92.1 9.7 0.00021 40.0 17.4 106 172-280 208-313 (650)
14 COG1196 Smc Chromosome segrega 91.9 25 0.00055 39.5 23.2 6 244-249 885-890 (1163)
15 KOG0250 DNA repair protein RAD 91.7 12 0.00025 41.7 17.6 50 237-286 366-420 (1074)
16 PRK11637 AmiB activator; Provi 91.5 3.9 8.4E-05 40.6 13.1 21 128-148 44-64 (428)
17 COG5185 HEC1 Protein involved 91.5 9.4 0.0002 39.0 15.4 79 196-288 318-396 (622)
18 TIGR00606 rad50 rad50. This fa 91.1 13 0.00029 42.2 18.2 49 236-284 944-994 (1311)
19 PF11559 ADIP: Afadin- and alp 90.6 9.6 0.00021 32.3 17.9 45 85-142 5-49 (151)
20 TIGR01010 BexC_CtrB_KpsE polys 90.4 18 0.00038 35.0 18.2 86 201-288 214-299 (362)
21 KOG0963 Transcription factor/C 89.7 30 0.00064 36.5 18.3 160 108-281 187-358 (629)
22 PRK02224 chromosome segregatio 89.6 26 0.00056 37.8 18.1 14 20-33 110-123 (880)
23 PF06160 EzrA: Septation ring 89.6 9.2 0.0002 39.6 14.2 144 139-285 272-432 (560)
24 PRK03918 chromosome segregatio 88.7 38 0.00082 36.4 19.0 11 22-32 111-121 (880)
25 PF13514 AAA_27: AAA domain 88.0 50 0.0011 37.0 27.9 70 219-288 837-917 (1111)
26 PF14662 CCDC155: Coiled-coil 87.9 20 0.00044 32.4 16.0 57 124-180 1-57 (193)
27 PF07888 CALCOCO1: Calcium bin 87.8 38 0.00082 35.3 19.0 26 264-289 280-305 (546)
28 PRK02224 chromosome segregatio 87.6 45 0.00098 35.9 22.6 56 231-286 532-591 (880)
29 PF09726 Macoilin: Transmembra 87.5 11 0.00025 40.2 13.5 25 194-218 488-512 (697)
30 PF08317 Spc7: Spc7 kinetochor 87.4 28 0.00061 33.4 16.9 44 111-154 55-98 (325)
31 PRK11519 tyrosine kinase; Prov 87.4 44 0.00095 35.6 19.8 82 193-288 310-391 (719)
32 PF10168 Nup88: Nuclear pore c 87.1 48 0.001 35.7 18.8 84 129-219 541-625 (717)
33 PF15619 Lebercilin: Ciliary p 87.0 23 0.00049 31.9 16.1 83 127-216 8-90 (194)
34 COG3883 Uncharacterized protei 86.8 29 0.00063 32.9 15.7 101 187-289 73-187 (265)
35 KOG2911 Uncharacterized conser 86.6 38 0.00082 34.2 15.6 70 204-283 317-386 (439)
36 KOG0161 Myosin class II heavy 86.6 80 0.0017 37.8 25.0 81 202-285 1802-1882(1930)
37 PF04012 PspA_IM30: PspA/IM30 86.5 24 0.00051 31.6 13.9 67 187-260 112-189 (221)
38 PF00038 Filament: Intermediat 85.7 27 0.00059 32.7 13.9 54 129-182 59-112 (312)
39 TIGR03007 pepcterm_ChnLen poly 85.6 42 0.00091 33.7 17.8 52 235-286 323-374 (498)
40 TIGR03007 pepcterm_ChnLen poly 85.3 25 0.00055 35.2 14.2 21 263-283 320-340 (498)
41 KOG0161 Myosin class II heavy 84.9 33 0.00073 40.8 16.3 84 196-286 1057-1144(1930)
42 PRK09841 cryptic autophosphory 84.3 62 0.0013 34.6 19.4 82 193-288 310-391 (726)
43 PF04156 IncA: IncA protein; 84.1 28 0.0006 30.3 13.0 35 138-172 81-115 (191)
44 PF10174 Cast: RIM-binding pro 84.0 69 0.0015 34.8 23.8 54 112-172 289-342 (775)
45 PF06008 Laminin_I: Laminin Do 84.0 36 0.00077 31.5 14.1 89 187-283 80-169 (264)
46 PF08317 Spc7: Spc7 kinetochor 83.8 42 0.00092 32.2 16.9 46 230-281 245-290 (325)
47 KOG0963 Transcription factor/C 83.4 65 0.0014 34.0 20.5 81 72-154 44-130 (629)
48 KOG4603 TBP-1 interacting prot 83.3 34 0.00073 30.7 12.9 103 153-276 87-197 (201)
49 TIGR01005 eps_transp_fam exopo 83.2 68 0.0015 34.1 19.0 27 131-157 237-263 (754)
50 PF00261 Tropomyosin: Tropomyo 82.6 39 0.00085 30.9 13.9 83 136-218 6-102 (237)
51 PF15188 CCDC-167: Coiled-coil 82.4 6.4 0.00014 31.1 6.7 60 194-257 5-64 (85)
52 PRK04778 septation ring format 81.9 68 0.0015 33.2 25.3 85 199-291 416-500 (569)
53 KOG0996 Structural maintenance 81.4 1E+02 0.0022 35.0 20.0 10 43-52 774-783 (1293)
54 PF07106 TBPIP: Tat binding pr 81.3 7.5 0.00016 33.6 7.5 60 193-257 78-137 (169)
55 PF10174 Cast: RIM-binding pro 81.1 89 0.0019 34.0 21.5 172 115-287 306-492 (775)
56 PRK11281 hypothetical protein; 80.8 1.1E+02 0.0023 34.8 22.5 58 122-179 119-176 (1113)
57 PF10146 zf-C4H2: Zinc finger- 80.6 30 0.00064 32.1 11.5 34 227-263 79-112 (230)
58 TIGR02680 conserved hypothetic 80.5 85 0.0019 36.2 17.3 50 236-288 333-382 (1353)
59 KOG0971 Microtubule-associated 80.3 82 0.0018 35.0 15.9 40 184-223 414-459 (1243)
60 KOG0976 Rho/Rac1-interacting s 79.7 1E+02 0.0022 33.9 20.2 95 191-285 341-435 (1265)
61 PF00261 Tropomyosin: Tropomyo 79.6 50 0.0011 30.2 15.7 19 267-285 211-229 (237)
62 PF07106 TBPIP: Tat binding pr 79.4 40 0.00087 29.0 12.2 58 230-288 80-137 (169)
63 PF10168 Nup88: Nuclear pore c 78.7 46 0.00099 35.8 13.7 24 229-252 692-715 (717)
64 KOG0250 DNA repair protein RAD 78.3 1.2E+02 0.0027 34.0 26.3 115 131-252 274-417 (1074)
65 PHA02562 46 endonuclease subun 77.8 83 0.0018 31.8 20.2 60 196-255 222-281 (562)
66 KOG4603 TBP-1 interacting prot 77.0 32 0.0007 30.8 10.0 93 196-293 88-185 (201)
67 PF10191 COG7: Golgi complex c 76.8 1.2E+02 0.0025 32.9 17.1 48 236-291 144-191 (766)
68 PF03962 Mnd1: Mnd1 family; I 76.5 47 0.001 29.7 11.2 70 191-261 66-135 (188)
69 KOG1937 Uncharacterized conser 76.4 95 0.0021 31.8 16.5 92 184-278 297-396 (521)
70 PF09730 BicD: Microtubule-ass 75.3 99 0.0022 33.4 14.9 41 236-283 97-137 (717)
71 PTZ00464 SNF-7-like protein; P 74.9 67 0.0015 29.3 17.5 146 127-284 14-174 (211)
72 COG1340 Uncharacterized archae 74.0 87 0.0019 30.2 15.3 18 129-146 136-153 (294)
73 PF05278 PEARLI-4: Arabidopsis 73.8 84 0.0018 29.9 15.3 177 63-259 75-265 (269)
74 PF00038 Filament: Intermediat 73.8 79 0.0017 29.6 17.3 28 231-258 278-305 (312)
75 PF10234 Cluap1: Clusterin-ass 73.7 84 0.0018 29.8 16.3 79 129-207 167-259 (267)
76 COG1842 PspA Phage shock prote 72.8 79 0.0017 29.2 13.3 25 123-148 24-48 (225)
77 COG5185 HEC1 Protein involved 72.7 55 0.0012 33.7 11.6 30 240-269 404-433 (622)
78 PF06008 Laminin_I: Laminin Do 72.2 82 0.0018 29.1 18.4 34 88-122 3-36 (264)
79 TIGR01843 type_I_hlyD type I s 72.2 95 0.0021 29.8 19.6 15 196-210 167-181 (423)
80 PF09726 Macoilin: Transmembra 71.8 1.5E+02 0.0032 31.9 16.3 90 196-286 554-648 (697)
81 PF15035 Rootletin: Ciliary ro 70.9 21 0.00046 31.8 7.6 92 196-290 18-118 (182)
82 PF09755 DUF2046: Uncharacteri 70.6 1.1E+02 0.0023 29.8 18.9 136 127-262 109-255 (310)
83 PF05911 DUF869: Plant protein 68.4 1.2E+02 0.0025 33.1 13.7 32 255-286 661-692 (769)
84 TIGR03545 conserved hypothetic 68.2 25 0.00053 36.7 8.5 70 187-263 175-247 (555)
85 PF14931 IFT20: Intraflagellar 68.2 57 0.0012 27.2 9.1 89 191-286 17-106 (120)
86 PF09755 DUF2046: Uncharacteri 68.1 1.2E+02 0.0026 29.4 17.3 48 236-283 185-245 (310)
87 KOG4643 Uncharacterized coiled 67.8 1.3E+02 0.0028 33.8 13.8 123 121-256 159-291 (1195)
88 PRK11415 hypothetical protein; 67.5 52 0.0011 25.0 8.4 66 204-289 3-68 (74)
89 PF06120 Phage_HK97_TLTM: Tail 67.3 38 0.00082 32.7 8.9 102 192-293 39-160 (301)
90 PRK10929 putative mechanosensi 67.0 2.3E+02 0.005 32.2 24.1 30 125-154 103-132 (1109)
91 COG4942 Membrane-bound metallo 66.6 1.5E+02 0.0033 30.0 16.9 48 123-170 72-119 (420)
92 PF15294 Leu_zip: Leucine zipp 66.3 37 0.0008 32.4 8.6 44 137-180 131-174 (278)
93 PF12718 Tropomyosin_1: Tropom 66.0 84 0.0018 26.8 12.3 10 196-205 82-91 (143)
94 KOG2391 Vacuolar sorting prote 65.9 49 0.0011 32.6 9.4 37 176-212 249-285 (365)
95 PF13851 GAS: Growth-arrest sp 65.1 69 0.0015 28.8 9.8 55 161-215 22-76 (201)
96 PF05557 MAD: Mitotic checkpoi 65.0 1.4E+02 0.0031 31.8 13.7 69 188-256 504-586 (722)
97 PF10046 BLOC1_2: Biogenesis o 65.0 69 0.0015 25.5 10.4 26 229-254 73-98 (99)
98 KOG0964 Structural maintenance 64.4 2.5E+02 0.0054 31.7 18.9 27 227-253 416-442 (1200)
99 PF14662 CCDC155: Coiled-coil 63.5 1.2E+02 0.0025 27.6 17.0 39 236-284 151-189 (193)
100 PF10212 TTKRSYEDQ: Predicted 63.4 1.2E+02 0.0027 31.4 12.2 33 129-161 418-450 (518)
101 PF10473 CENP-F_leu_zip: Leuci 63.0 99 0.0021 26.6 14.1 72 187-265 45-116 (140)
102 PF15619 Lebercilin: Ciliary p 62.9 1.2E+02 0.0025 27.4 13.9 28 190-217 121-148 (194)
103 PF04912 Dynamitin: Dynamitin 62.7 1.6E+02 0.0035 28.9 16.0 48 112-159 218-275 (388)
104 PRK10884 SH3 domain-containing 62.6 73 0.0016 28.9 9.5 23 197-219 89-111 (206)
105 PF06818 Fez1: Fez1; InterPro 62.2 1.3E+02 0.0028 27.5 13.7 27 260-286 131-157 (202)
106 KOG4593 Mitotic checkpoint pro 61.6 2.3E+02 0.0051 30.5 14.0 154 110-281 151-320 (716)
107 KOG1655 Protein involved in va 61.4 1.3E+02 0.0029 27.5 11.7 33 125-157 13-45 (218)
108 PF07889 DUF1664: Protein of u 61.2 1E+02 0.0022 26.1 11.0 81 127-217 39-119 (126)
109 PF06632 XRCC4: DNA double-str 60.7 1.2E+02 0.0026 29.7 11.3 16 200-215 193-208 (342)
110 PF05667 DUF812: Protein of un 60.4 2.3E+02 0.005 29.9 16.6 16 268-283 448-463 (594)
111 PF15070 GOLGA2L5: Putative go 59.6 2.4E+02 0.0052 29.9 17.1 47 136-182 20-66 (617)
112 PF09730 BicD: Microtubule-ass 59.4 2E+02 0.0043 31.2 13.3 55 209-263 420-474 (717)
113 PF10186 Atg14: UV radiation r 59.0 1.4E+02 0.0031 27.2 12.5 26 132-157 21-46 (302)
114 PRK04863 mukB cell division pr 59.0 3.6E+02 0.0078 31.8 26.5 34 251-284 538-575 (1486)
115 KOG4466 Component of histone d 59.0 53 0.0011 31.4 8.1 24 268-291 98-121 (291)
116 KOG4674 Uncharacterized conser 58.9 3.9E+02 0.0084 32.1 21.9 26 227-252 963-988 (1822)
117 KOG0980 Actin-binding protein 58.8 2.9E+02 0.0064 30.7 18.7 85 99-197 434-518 (980)
118 COG0216 PrfA Protein chain rel 57.8 99 0.0021 30.5 9.9 23 263-285 79-101 (363)
119 PRK09841 cryptic autophosphory 57.2 2.1E+02 0.0045 30.6 13.3 97 187-285 260-364 (726)
120 COG1579 Zn-ribbon protein, pos 57.0 1.7E+02 0.0037 27.4 17.8 19 199-217 64-82 (239)
121 KOG0964 Structural maintenance 56.4 3.4E+02 0.0074 30.7 15.9 79 129-211 849-933 (1200)
122 PF04912 Dynamitin: Dynamitin 56.4 2.1E+02 0.0045 28.2 13.7 103 105-216 241-344 (388)
123 PF11932 DUF3450: Protein of u 56.3 1.6E+02 0.0035 27.0 14.5 91 132-222 43-145 (251)
124 PF10805 DUF2730: Protein of u 56.2 61 0.0013 26.2 7.1 55 196-255 37-91 (106)
125 PRK01156 chromosome segregatio 55.3 3.1E+02 0.0067 29.8 21.2 23 133-155 471-493 (895)
126 KOG0977 Nuclear envelope prote 55.2 1.5E+02 0.0032 31.0 11.3 12 280-291 240-251 (546)
127 PF14282 FlxA: FlxA-like prote 55.0 63 0.0014 26.1 7.0 51 236-286 19-70 (106)
128 PF06009 Laminin_II: Laminin D 54.9 4 8.7E-05 34.5 0.0 86 187-279 24-109 (138)
129 PF05701 WEMBL: Weak chloropla 54.8 2.6E+02 0.0056 28.8 23.3 27 262-288 395-421 (522)
130 PF11855 DUF3375: Protein of u 54.4 2.5E+02 0.0055 28.6 17.6 38 21-59 69-113 (478)
131 PF13514 AAA_27: AAA domain 53.9 3.7E+02 0.008 30.3 24.6 47 236-283 910-956 (1111)
132 PTZ00446 vacuolar sorting prot 53.8 1.7E+02 0.0037 26.4 18.7 146 118-281 4-175 (191)
133 PF12718 Tropomyosin_1: Tropom 53.3 1.4E+02 0.0031 25.4 13.1 12 199-210 78-89 (143)
134 PF12128 DUF3584: Protein of u 53.1 4E+02 0.0086 30.4 26.9 81 203-287 745-843 (1201)
135 PF05701 WEMBL: Weak chloropla 52.9 2.8E+02 0.006 28.6 16.7 35 254-288 366-400 (522)
136 PF05622 HOOK: HOOK protein; 52.8 7.6 0.00016 41.3 1.6 12 242-253 345-356 (713)
137 PF05667 DUF812: Protein of un 51.6 3.2E+02 0.0069 28.9 14.2 42 129-170 326-367 (594)
138 PF08614 ATG16: Autophagy prot 51.2 1.1E+02 0.0024 27.0 8.6 8 135-142 78-85 (194)
139 PF05008 V-SNARE: Vesicle tran 51.2 99 0.0022 22.9 7.9 56 227-285 23-79 (79)
140 PRK13182 racA polar chromosome 50.6 64 0.0014 28.6 6.9 48 235-287 98-145 (175)
141 PRK10929 putative mechanosensi 50.5 4.3E+02 0.0094 30.1 19.6 95 187-284 116-225 (1109)
142 KOG0804 Cytoplasmic Zn-finger 50.2 3E+02 0.0066 28.2 13.2 28 145-172 339-367 (493)
143 PRK10476 multidrug resistance 49.9 2.4E+02 0.0051 26.9 14.6 64 217-283 143-206 (346)
144 PF05266 DUF724: Protein of un 49.4 2E+02 0.0043 25.8 13.3 55 230-287 132-186 (190)
145 COG0177 Nth Predicted EndoIII- 48.8 64 0.0014 29.6 6.7 56 18-77 3-58 (211)
146 COG1229 FwdA Formylmethanofura 48.5 29 0.00063 35.3 4.8 44 16-61 162-227 (575)
147 PRK04863 mukB cell division pr 48.5 5.2E+02 0.011 30.5 26.3 48 187-235 397-444 (1486)
148 TIGR01010 BexC_CtrB_KpsE polys 47.9 2.6E+02 0.0057 26.8 12.1 87 194-283 170-265 (362)
149 PRK01156 chromosome segregatio 47.5 4E+02 0.0088 28.9 17.7 7 23-29 112-118 (895)
150 KOG4674 Uncharacterized conser 47.5 5.8E+02 0.013 30.8 22.9 51 230-286 1315-1365(1822)
151 KOG0239 Kinesin (KAR3 subfamil 47.3 3.7E+02 0.008 28.9 13.0 32 228-260 293-324 (670)
152 PRK10265 chaperone-modulator p 47.0 56 0.0012 26.1 5.5 39 220-259 63-101 (101)
153 PF10458 Val_tRNA-synt_C: Valy 47.0 37 0.00081 24.9 4.2 57 198-254 8-64 (66)
154 PF05911 DUF869: Plant protein 46.9 4.2E+02 0.0092 29.0 13.8 29 230-258 734-762 (769)
155 PRK00736 hypothetical protein; 46.8 67 0.0014 24.0 5.5 26 191-216 30-55 (68)
156 PF14992 TMCO5: TMCO5 family 46.6 2.5E+02 0.0054 27.0 10.5 47 236-285 123-169 (280)
157 PF04518 Effector_1: Effector 46.4 3.2E+02 0.0069 27.4 12.9 92 89-182 142-237 (379)
158 TIGR02231 conserved hypothetic 46.3 2.7E+02 0.0059 28.3 11.7 27 188-214 125-151 (525)
159 TIGR00634 recN DNA repair prot 46.2 3.6E+02 0.0077 27.9 13.9 51 240-290 326-376 (563)
160 PF08397 IMD: IRSp53/MIM homol 46.1 2.2E+02 0.0049 25.5 20.2 42 102-145 30-72 (219)
161 KOG4643 Uncharacterized coiled 45.9 5E+02 0.011 29.5 18.6 27 226-252 575-601 (1195)
162 KOG0971 Microtubule-associated 45.7 4.9E+02 0.011 29.4 19.5 140 127-280 272-416 (1243)
163 COG1340 Uncharacterized archae 45.7 2.9E+02 0.0063 26.7 13.4 20 195-214 166-185 (294)
164 PF05557 MAD: Mitotic checkpoi 45.6 21 0.00045 38.1 3.5 29 122-150 334-362 (722)
165 PF14257 DUF4349: Domain of un 44.8 61 0.0013 29.9 6.2 37 107-144 109-145 (262)
166 KOG1029 Endocytic adaptor prot 44.2 4.9E+02 0.011 28.9 14.1 22 240-261 504-527 (1118)
167 PF04582 Reo_sigmaC: Reovirus 44.0 39 0.00083 33.0 4.8 25 191-215 130-154 (326)
168 COG4477 EzrA Negative regulato 44.0 4.1E+02 0.0088 27.9 13.5 28 257-284 407-434 (570)
169 PF06810 Phage_GP20: Phage min 43.8 1.6E+02 0.0034 25.5 8.2 54 230-283 21-74 (155)
170 PF09057 Smac_DIABLO: Second M 43.8 1.1E+02 0.0025 28.3 7.5 57 230-286 87-152 (234)
171 PLN03229 acetyl-coenzyme A car 43.5 4.7E+02 0.01 28.6 13.3 21 274-294 649-669 (762)
172 KOG2196 Nuclear porin [Nuclear 42.8 2.4E+02 0.0053 26.5 9.6 25 126-150 108-132 (254)
173 PF04012 PspA_IM30: PspA/IM30 42.8 2.4E+02 0.0053 25.0 15.0 22 127-148 26-47 (221)
174 cd07643 I-BAR_IMD_MIM Inverse 42.6 2.9E+02 0.0062 25.8 16.4 82 102-206 42-124 (231)
175 KOG0612 Rho-associated, coiled 42.6 5.9E+02 0.013 29.4 15.7 13 131-143 472-484 (1317)
176 PRK00295 hypothetical protein; 42.0 96 0.0021 23.2 5.7 24 191-214 30-53 (68)
177 PF12795 MscS_porin: Mechanose 41.6 2.7E+02 0.0059 25.3 14.9 58 224-284 145-202 (240)
178 PF09763 Sec3_C: Exocyst compl 41.3 4.6E+02 0.01 27.8 17.0 89 192-287 80-171 (701)
179 PF15290 Syntaphilin: Golgi-lo 41.1 3.4E+02 0.0074 26.2 10.5 95 118-219 48-142 (305)
180 PF05622 HOOK: HOOK protein; 41.0 9 0.0002 40.7 0.0 26 193-218 355-380 (713)
181 COG3206 GumC Uncharacterized p 40.7 3.8E+02 0.0083 26.7 12.5 46 236-288 349-394 (458)
182 PF11172 DUF2959: Protein of u 40.7 2.9E+02 0.0063 25.3 15.8 71 84-157 19-90 (201)
183 PF12761 End3: Actin cytoskele 40.4 2.9E+02 0.0062 25.1 12.2 93 190-288 94-188 (195)
184 PF05529 Bap31: B-cell recepto 40.0 2E+02 0.0043 25.2 8.5 39 235-283 153-191 (192)
185 PF14229 DUF4332: Domain of un 39.9 69 0.0015 26.4 5.1 53 217-274 69-121 (122)
186 PF10498 IFT57: Intra-flagella 39.6 3.8E+02 0.0083 26.4 14.3 41 22-63 46-88 (359)
187 PF07111 HCR: Alpha helical co 39.3 5.3E+02 0.012 28.0 23.8 174 98-284 293-495 (739)
188 COG1842 PspA Phage shock prote 38.6 3.2E+02 0.0069 25.2 15.5 86 166-258 92-188 (225)
189 PF15254 CCDC14: Coiled-coil d 38.2 5.8E+02 0.013 28.1 15.0 57 200-263 507-564 (861)
190 COG2433 Uncharacterized conser 38.2 4.2E+02 0.0091 28.3 11.4 18 57-74 335-352 (652)
191 cd07605 I-BAR_IMD Inverse (I)- 37.5 3.3E+02 0.0072 25.0 15.7 38 99-138 37-75 (223)
192 PF13094 CENP-Q: CENP-Q, a CEN 37.0 2.6E+02 0.0057 23.7 8.8 34 240-273 123-156 (160)
193 PF13234 rRNA_proc-arch: rRNA- 37.0 2E+02 0.0043 26.6 8.3 65 190-254 203-267 (268)
194 PF07851 TMPIT: TMPIT-like pro 36.5 4E+02 0.0087 26.1 10.5 17 133-149 6-22 (330)
195 PLN02320 seryl-tRNA synthetase 36.3 4.5E+02 0.0097 27.3 11.3 74 210-286 76-156 (502)
196 PRK00286 xseA exodeoxyribonucl 36.3 4.4E+02 0.0096 26.1 17.0 66 198-284 324-389 (438)
197 PF10481 CENP-F_N: Cenp-F N-te 36.1 4.1E+02 0.0088 25.7 11.1 29 263-291 105-133 (307)
198 PF07544 Med9: RNA polymerase 36.0 1.5E+02 0.0033 22.8 6.2 55 197-255 24-78 (83)
199 KOG1029 Endocytic adaptor prot 35.3 6.7E+02 0.014 27.9 15.5 21 190-210 482-502 (1118)
200 COG2433 Uncharacterized conser 35.3 5.9E+02 0.013 27.2 17.5 15 89-106 359-373 (652)
201 PRK10698 phage shock protein P 35.0 3.5E+02 0.0076 24.6 18.5 22 236-257 166-187 (222)
202 PF04849 HAP1_N: HAP1 N-termin 34.9 4.4E+02 0.0094 25.6 11.1 123 70-202 183-305 (306)
203 KOG0018 Structural maintenance 34.7 7.4E+02 0.016 28.3 17.0 89 190-284 728-824 (1141)
204 PF05700 BCAS2: Breast carcino 34.5 3.5E+02 0.0076 24.5 10.2 24 229-252 196-219 (221)
205 cd07665 BAR_SNX1 The Bin/Amphi 34.3 3.8E+02 0.0083 24.8 18.7 54 121-178 15-69 (234)
206 TIGR02231 conserved hypothetic 34.0 4.2E+02 0.0091 27.0 10.8 23 264-286 149-171 (525)
207 PF07889 DUF1664: Protein of u 34.0 2.9E+02 0.0063 23.3 9.8 30 153-182 69-98 (126)
208 PRK11519 tyrosine kinase; Prov 33.5 3.2E+02 0.0069 29.2 10.1 89 192-283 265-362 (719)
209 TIGR03017 EpsF chain length de 33.2 4.7E+02 0.01 25.6 19.8 43 231-276 256-298 (444)
210 PF15070 GOLGA2L5: Putative go 33.2 6.2E+02 0.013 26.9 15.3 21 197-217 198-218 (617)
211 PRK13729 conjugal transfer pil 33.1 1.6E+02 0.0034 30.3 7.3 20 198-217 101-120 (475)
212 PRK10869 recombination and rep 33.0 5.8E+02 0.013 26.5 13.7 48 243-290 324-371 (553)
213 KOG0804 Cytoplasmic Zn-finger 32.9 5.6E+02 0.012 26.4 12.1 15 195-209 411-425 (493)
214 PRK10884 SH3 domain-containing 32.9 3.8E+02 0.0082 24.3 10.3 14 135-148 97-110 (206)
215 PLN02943 aminoacyl-tRNA ligase 32.8 1.3E+02 0.0028 33.4 7.3 65 194-258 889-953 (958)
216 TIGR00414 serS seryl-tRNA synt 32.6 4.9E+02 0.011 26.0 10.8 74 212-285 13-94 (418)
217 COG4026 Uncharacterized protei 32.5 2.4E+02 0.0052 26.5 7.8 49 131-179 128-176 (290)
218 PRK05729 valS valyl-tRNA synth 32.5 1.4E+02 0.0031 32.6 7.5 64 193-256 810-873 (874)
219 PRK05892 nucleoside diphosphat 32.5 2.5E+02 0.0054 24.3 7.7 56 226-286 8-66 (158)
220 PRK03598 putative efflux pump 32.4 4.3E+02 0.0094 24.9 16.0 79 202-284 122-202 (331)
221 TIGR03757 conj_TIGR03757 integ 32.1 59 0.0013 27.0 3.5 14 254-267 36-49 (113)
222 PF13805 Pil1: Eisosome compon 31.8 4.6E+02 0.01 25.0 13.3 17 46-62 53-69 (271)
223 PF12128 DUF3584: Protein of u 31.6 8.3E+02 0.018 27.9 25.5 29 257-285 885-920 (1201)
224 KOG0933 Structural maintenance 31.5 8.3E+02 0.018 27.9 19.6 16 51-66 672-687 (1174)
225 PF10264 Stork_head: Winged he 30.9 42 0.00092 26.2 2.3 30 23-54 34-63 (80)
226 KOG0993 Rab5 GTPase effector R 30.9 4.3E+02 0.0094 27.0 9.8 86 128-214 96-182 (542)
227 KOG3647 Predicted coiled-coil 30.8 3.9E+02 0.0084 25.8 9.0 27 116-144 65-91 (338)
228 PF08657 DASH_Spc34: DASH comp 30.8 4.6E+02 0.01 24.7 9.8 30 190-219 183-212 (259)
229 PF11932 DUF3450: Protein of u 30.8 4.2E+02 0.0091 24.2 17.5 24 256-279 120-143 (251)
230 PF10212 TTKRSYEDQ: Predicted 30.7 6.4E+02 0.014 26.3 11.9 64 187-255 448-513 (518)
231 PF04799 Fzo_mitofusin: fzo-li 30.7 53 0.0012 29.2 3.2 47 237-290 121-167 (171)
232 COG1315 Uncharacterized conser 30.5 1.1E+02 0.0023 31.8 5.7 66 220-286 402-487 (543)
233 KOG1853 LIS1-interacting prote 30.1 5E+02 0.011 24.9 12.7 11 104-114 41-51 (333)
234 PF10234 Cluap1: Clusterin-ass 30.1 4.9E+02 0.011 24.8 10.5 25 19-45 20-44 (267)
235 KOG0999 Microtubule-associated 29.6 7.2E+02 0.016 26.5 17.2 40 236-282 170-209 (772)
236 KOG4196 bZIP transcription fac 29.5 3.6E+02 0.0077 23.1 7.7 63 215-291 57-119 (135)
237 PTZ00419 valyl-tRNA synthetase 29.2 1.4E+02 0.0029 33.3 6.7 64 195-258 930-993 (995)
238 PF12795 MscS_porin: Mechanose 29.1 4.4E+02 0.0095 23.9 17.4 116 63-182 13-136 (240)
239 KOG0933 Structural maintenance 29.0 9.1E+02 0.02 27.6 21.5 32 260-291 958-989 (1174)
240 TIGR01000 bacteriocin_acc bact 29.0 5.9E+02 0.013 25.4 17.7 22 73-94 102-123 (457)
241 PF15456 Uds1: Up-regulated Du 28.7 2.3E+02 0.0051 23.7 6.6 26 225-250 70-95 (124)
242 TIGR00019 prfA peptide chain r 28.6 4.6E+02 0.0099 26.0 9.6 19 264-282 79-97 (360)
243 PF10153 DUF2361: Uncharacteri 28.4 1.3E+02 0.0028 24.9 4.9 23 257-285 17-39 (114)
244 TIGR03185 DNA_S_dndD DNA sulfu 28.3 7.2E+02 0.016 26.1 18.3 14 193-206 448-461 (650)
245 PF10186 Atg14: UV radiation r 28.2 4.6E+02 0.0099 23.8 13.6 27 140-166 22-48 (302)
246 PF07058 Myosin_HC-like: Myosi 28.1 5.9E+02 0.013 25.0 11.9 84 135-222 4-87 (351)
247 PF05008 V-SNARE: Vesicle tran 27.7 2.5E+02 0.0055 20.7 8.3 39 174-218 40-78 (79)
248 PF04859 DUF641: Plant protein 27.7 3.8E+02 0.0083 22.7 11.2 50 196-252 82-131 (131)
249 KOG0976 Rho/Rac1-interacting s 27.7 9E+02 0.02 27.1 20.9 89 193-285 336-428 (1265)
250 PF05478 Prominin: Prominin; 27.4 8.2E+02 0.018 26.6 12.1 17 99-115 585-601 (806)
251 PRK02793 phi X174 lysis protei 27.4 2E+02 0.0043 21.7 5.4 25 191-215 33-57 (72)
252 PRK04758 hypothetical protein; 27.3 1.8E+02 0.0038 26.0 5.9 88 24-122 41-140 (181)
253 PF07888 CALCOCO1: Calcium bin 26.9 7.6E+02 0.017 26.0 23.7 25 260-284 364-388 (546)
254 PF10224 DUF2205: Predicted co 26.9 3.1E+02 0.0066 21.4 6.6 38 130-167 29-66 (80)
255 PF08614 ATG16: Autophagy prot 26.9 4.4E+02 0.0095 23.2 8.5 31 127-157 91-121 (194)
256 smart00787 Spc7 Spc7 kinetocho 26.8 5.8E+02 0.013 24.6 14.7 47 230-282 240-286 (312)
257 PF04380 BMFP: Membrane fusoge 26.8 2.9E+02 0.0063 21.1 6.6 39 213-254 37-75 (79)
258 PRK05431 seryl-tRNA synthetase 26.7 6.6E+02 0.014 25.2 11.1 71 213-285 14-91 (425)
259 PF08657 DASH_Spc34: DASH comp 26.7 4.6E+02 0.0099 24.7 8.8 20 229-248 239-258 (259)
260 PF02403 Seryl_tRNA_N: Seryl-t 26.6 3.2E+02 0.0069 21.5 10.8 74 212-286 13-93 (108)
261 PF12325 TMF_TATA_bd: TATA ele 26.5 3.8E+02 0.0082 22.3 13.5 19 234-252 94-112 (120)
262 KOG0980 Actin-binding protein 26.4 9.5E+02 0.021 26.9 14.9 19 229-247 459-477 (980)
263 KOG3850 Predicted membrane pro 26.2 7E+02 0.015 25.3 11.4 30 190-219 288-317 (455)
264 PRK04406 hypothetical protein; 26.2 2E+02 0.0044 21.9 5.3 25 191-215 36-60 (75)
265 smart00787 Spc7 Spc7 kinetocho 26.0 6E+02 0.013 24.5 17.5 23 195-217 240-262 (312)
266 PF10498 IFT57: Intra-flagella 25.6 6.6E+02 0.014 24.8 12.0 15 268-282 336-350 (359)
267 PF02203 TarH: Tar ligand bind 25.6 1.9E+02 0.0041 23.9 5.6 51 235-285 81-132 (171)
268 KOG3684 Ca2+-activated K+ chan 25.5 7.6E+02 0.017 25.5 10.9 32 224-255 429-460 (489)
269 PF15358 TSKS: Testis-specific 25.4 5.1E+02 0.011 26.5 9.2 24 268-291 292-318 (558)
270 PF07511 DUF1525: Protein of u 25.2 81 0.0017 26.2 3.1 25 253-280 34-58 (114)
271 KOG0978 E3 ubiquitin ligase in 25.2 9E+02 0.02 26.2 16.6 154 126-286 456-613 (698)
272 PLN02381 valyl-tRNA synthetase 24.9 2E+02 0.0043 32.5 7.0 66 194-259 997-1062(1066)
273 KOG3647 Predicted coiled-coil 24.8 6.4E+02 0.014 24.4 13.9 26 229-254 175-200 (338)
274 cd02681 MIT_calpain7_1 MIT: do 24.8 1.1E+02 0.0023 23.5 3.5 24 196-219 50-73 (76)
275 KOG4286 Dystrophin-like protei 24.7 9.4E+02 0.02 26.6 11.4 118 136-253 197-332 (966)
276 PRK00591 prfA peptide chain re 24.7 6.4E+02 0.014 25.0 9.8 18 264-281 79-96 (359)
277 KOG4687 Uncharacterized coiled 24.6 6E+02 0.013 24.7 9.1 33 149-181 13-45 (389)
278 PRK15178 Vi polysaccharide exp 24.4 7.7E+02 0.017 25.1 15.1 25 229-253 314-338 (434)
279 PRK10803 tol-pal system protei 24.4 3.5E+02 0.0075 25.3 7.6 45 168-212 56-100 (263)
280 PF11420 Subtilosin_A: Bacteri 24.3 35 0.00075 22.1 0.6 11 36-46 16-26 (35)
281 TIGR02977 phageshock_pspA phag 24.2 5.3E+02 0.011 23.2 16.3 18 239-256 169-186 (219)
282 PLN03229 acetyl-coenzyme A car 24.1 5.6E+02 0.012 28.0 9.7 46 240-294 670-715 (762)
283 COG5570 Uncharacterized small 24.0 2.9E+02 0.0063 20.1 5.5 50 202-251 6-55 (57)
284 PF14915 CCDC144C: CCDC144C pr 24.0 6.8E+02 0.015 24.3 14.2 139 139-287 32-178 (305)
285 cd09234 V_HD-PTP_like Protein- 24.0 6.5E+02 0.014 24.2 16.5 24 229-252 191-214 (337)
286 TIGR00606 rad50 rad50. This fa 23.9 1.1E+03 0.025 27.0 25.5 43 235-277 446-488 (1311)
287 PF12240 Angiomotin_C: Angiomo 23.8 5.7E+02 0.012 23.4 9.2 23 194-216 57-79 (205)
288 KOG0018 Structural maintenance 23.8 1.1E+03 0.025 26.9 15.3 22 196-217 776-797 (1141)
289 smart00319 TarH Homologues of 23.8 2.8E+02 0.0061 21.7 6.1 44 236-279 42-85 (135)
290 PF09388 SpoOE-like: Spo0E lik 23.7 86 0.0019 21.2 2.6 18 226-243 22-39 (45)
291 PF09789 DUF2353: Uncharacteri 23.7 6.9E+02 0.015 24.4 16.5 24 195-218 87-110 (319)
292 PRK15396 murein lipoprotein; P 23.6 2.1E+02 0.0045 22.2 5.0 52 229-290 25-76 (78)
293 TIGR02971 heterocyst_DevB ABC 23.6 6E+02 0.013 23.7 15.4 82 199-284 109-203 (327)
294 PF08826 DMPK_coil: DMPK coile 23.6 3.1E+02 0.0067 20.3 7.5 14 159-172 4-17 (61)
295 PF12486 DUF3702: ImpA domain 23.5 4.9E+02 0.011 22.5 8.4 78 199-281 64-141 (148)
296 PRK00846 hypothetical protein; 23.2 2.9E+02 0.0063 21.4 5.7 27 191-217 38-64 (77)
297 KOG2129 Uncharacterized conser 23.1 8.3E+02 0.018 25.1 15.3 132 134-292 132-285 (552)
298 PF06818 Fez1: Fez1; InterPro 22.8 5.9E+02 0.013 23.3 11.1 21 268-288 132-152 (202)
299 KOG1003 Actin filament-coating 22.6 6E+02 0.013 23.3 13.1 142 142-290 1-156 (205)
300 PF10458 Val_tRNA-synt_C: Valy 22.6 3.1E+02 0.0067 19.9 6.9 20 199-218 44-63 (66)
301 PF08581 Tup_N: Tup N-terminal 22.6 3.7E+02 0.008 20.8 7.9 16 206-221 62-77 (79)
302 PF12210 Hrs_helical: Hepatocy 22.5 4.2E+02 0.0091 21.4 7.8 81 197-288 5-91 (96)
303 cd02682 MIT_AAA_Arch MIT: doma 22.5 1.2E+02 0.0025 23.4 3.3 22 196-217 49-70 (75)
304 PF05103 DivIVA: DivIVA protei 22.3 55 0.0012 26.5 1.7 33 220-252 16-48 (131)
305 PRK14109 bifunctional glutamin 22.1 8.5E+02 0.018 27.4 11.2 112 8-138 882-994 (1007)
306 TIGR03545 conserved hypothetic 21.9 9.3E+02 0.02 25.2 12.7 82 169-260 194-275 (555)
307 PF06476 DUF1090: Protein of u 21.8 3.8E+02 0.0082 22.1 6.5 22 257-278 93-114 (115)
308 PF04799 Fzo_mitofusin: fzo-li 21.6 5.8E+02 0.013 22.7 9.1 30 187-216 137-166 (171)
309 PRK14127 cell division protein 21.5 90 0.0019 25.7 2.7 28 229-256 44-71 (109)
310 KOG0994 Extracellular matrix g 21.5 1.4E+03 0.029 26.9 22.0 38 252-289 1709-1746(1758)
311 PRK05431 seryl-tRNA synthetase 21.4 5.9E+02 0.013 25.5 9.1 28 130-157 27-54 (425)
312 KOG3758 Uncharacterized conser 21.1 1E+03 0.023 25.5 15.1 155 102-263 7-184 (655)
313 PF13094 CENP-Q: CENP-Q, a CEN 20.9 4.9E+02 0.011 22.1 7.3 13 246-258 136-148 (160)
314 TIGR02132 phaR_Bmeg polyhydrox 20.9 6.3E+02 0.014 22.8 9.2 68 216-287 62-134 (189)
315 KOG2991 Splicing regulator [RN 20.9 7.5E+02 0.016 23.8 11.7 182 87-279 106-304 (330)
316 COG4026 Uncharacterized protei 20.8 4.7E+02 0.01 24.6 7.4 26 191-216 153-178 (290)
317 PF08285 DPM3: Dolichol-phosph 20.8 81 0.0017 25.1 2.2 28 251-278 59-86 (91)
318 PF10473 CENP-F_leu_zip: Leuci 20.7 5.4E+02 0.012 22.0 13.4 24 193-216 79-102 (140)
319 PRK10803 tol-pal system protei 20.6 6.2E+02 0.013 23.6 8.5 64 207-287 39-102 (263)
320 PRK13182 racA polar chromosome 20.5 6E+02 0.013 22.4 9.1 47 168-216 101-147 (175)
321 PF04582 Reo_sigmaC: Reovirus 20.4 1.2E+02 0.0026 29.6 3.8 87 125-218 50-136 (326)
322 PLN02678 seryl-tRNA synthetase 20.2 6.3E+02 0.014 25.7 9.0 81 139-231 34-116 (448)
323 TIGR00998 8a0101 efflux pump m 20.1 2.6E+02 0.0056 26.2 5.9 94 199-292 78-171 (334)
No 1
>PRK09039 hypothetical protein; Validated
Probab=95.52 E-value=2 Score=41.87 Aligned_cols=144 Identities=13% Similarity=0.138 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch---hhHHHHHHh----HHH
Q 022524 126 LSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCE---AQMENWKTN----LAV 198 (295)
Q Consensus 126 ~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~---~~~~~~~r~----~k~ 198 (295)
+.=|+.+=.=|+.++...++...+++.+|..|-..+.=+......|...+.+++.+....+ .....|... ..-
T Consensus 34 l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~ 113 (343)
T PRK09039 34 LTVFVVAQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAA 113 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch
Confidence 5667777777888888888888888888888887777777777777767776665542111 222222111 112
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 022524 199 MASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAA 278 (295)
Q Consensus 199 L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~ 278 (295)
+..+...+...++..+.. .+-.|..|..+..++..|++++..|+..|..-..=- ..++.+|+..+++|..
T Consensus 114 ~~~~~~~l~~~L~~~k~~-------~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~---~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 114 AEGRAGELAQELDSEKQV-------SARALAQVELLNQQIAALRRQLAALEAALDASEKRD---RESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 333344444444333332 122556666676777777777666666665433211 4444444444444444
Q ss_pred H
Q 022524 279 A 279 (295)
Q Consensus 279 L 279 (295)
.
T Consensus 184 a 184 (343)
T PRK09039 184 A 184 (343)
T ss_pred H
Confidence 4
No 2
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=95.42 E-value=2.3 Score=39.60 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhhhhccc--cchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHH-------H
Q 022524 165 IARLTYLKRTLGQLEDDVA--PCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEM-------A 235 (295)
Q Consensus 165 l~~~~~L~~~L~~L~~d~~--~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~-------~ 235 (295)
.+-..+|.+++.-|+.=+. .+..+..--..+.+.|.+|++-..-+|...+-.+-..-|+ .++|.++ .
T Consensus 109 ~~y~~vL~~cl~~L~~li~~~rl~~q~~~d~~~~~~L~~kceam~lKLr~~~~~iL~~TYT----pe~v~Al~~Ir~~L~ 184 (238)
T PF14735_consen 109 ATYYQVLLQCLQLLQKLIEKHRLGTQAELDKIKAEYLEAKCEAMILKLRVLELEILSDTYT----PETVPALRKIRDHLE 184 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----HHhHHHHHHHHHHHH
Confidence 3344455555555543221 2233433334567788888888888888888766655664 3444433 3
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~ 286 (295)
+.+.++..+.......|++|.++.|+.. +.=+||.++-.+++.+
T Consensus 185 ~~~~~~e~~~~~a~~~L~~Ye~lg~~F~-------~ivreY~~l~~~ie~k 228 (238)
T PF14735_consen 185 EAIEELEQELQKARQRLESYEGLGPEFE-------EIVREYTDLQQEIENK 228 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHhHH-------HHHHHHHHHHHHHHHH
Confidence 6778888999999999999999999988 6667777777766655
No 3
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.20 E-value=1.7 Score=41.03 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=58.9
Q ss_pred HHhh-HHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 022524 199 MASK-ERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYA 277 (295)
Q Consensus 199 L~aK-~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~ 277 (295)
|.+| ..++..|+.+...-.. ..-..|.+..++-..|+.....++++++.+..|--+.+.=+..|+.-+.|+.
T Consensus 124 l~SkSfsD~IsRvtAi~~iv~-------aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~ 196 (265)
T COG3883 124 LNSKSFSDLISRVTAISVIVD-------ADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKN 196 (265)
T ss_pred HccCcHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 6667777766554311 2233455556677788888888888888888888888877788888888888
Q ss_pred HHHHHHHHHHHHh
Q 022524 278 AAEKYLEDVLHSA 290 (295)
Q Consensus 278 ~Le~~l~~~~~~~ 290 (295)
.+...+-....++
T Consensus 197 ~l~~~~aa~~a~~ 209 (265)
T COG3883 197 ALIAALAAKEASA 209 (265)
T ss_pred HHHHHHHHHHHHh
Confidence 8877776555443
No 4
>PRK11637 AmiB activator; Provisional
Probab=94.65 E-value=5.2 Score=39.73 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022524 140 KTAVEEKRAKVQKESKIL 157 (295)
Q Consensus 140 ~~~~e~~~~rl~~~i~~L 157 (295)
+.+++++....+.++..+
T Consensus 49 l~~l~~qi~~~~~~i~~~ 66 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQ 66 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 5
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.28 E-value=6.9 Score=39.64 Aligned_cols=14 Identities=7% Similarity=0.240 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhcc
Q 022524 20 RIADVKAWLASQFE 33 (295)
Q Consensus 20 ~~s~V~sWL~~~f~ 33 (295)
+...+..|+...|+
T Consensus 111 ~~~~~~~~i~~~~g 124 (562)
T PHA02562 111 SSKDFQKYFEQMLG 124 (562)
T ss_pred cHHHHHHHHHHHHC
Confidence 34468899999886
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.67 E-value=13 Score=40.57 Aligned_cols=20 Identities=5% Similarity=0.092 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022524 266 ALAIEDKKRQYAAAEKYLED 285 (295)
Q Consensus 266 r~kiEear~EL~~Le~~l~~ 285 (295)
+.+++.++.++..+..++.+
T Consensus 921 ~~~~~~~~~~~~~l~~~l~e 940 (1179)
T TIGR02168 921 REKLAQLELRLEGLEVRIDN 940 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 7
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.91 E-value=11 Score=37.81 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=51.0
Q ss_pred hhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcH----HH-H--HH---HH-HHHHHHHHh
Q 022524 176 GQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISH----GV-L--VE---MA-EHRKELEKK 244 (295)
Q Consensus 176 ~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh----~~-l--~~---~~-e~~~eL~~~ 244 (295)
.+...++.+...+..+...++..|..+.++=+.+++..=+.+..+|-+|++.. +. . +- .+ .=..++.++
T Consensus 83 ~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~ 162 (420)
T COG4942 83 IETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAER 162 (420)
T ss_pred HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHH
Confidence 33333333344444455555555665555555666655555667787775221 11 1 11 11 223366677
Q ss_pred cHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022524 245 TKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKY 282 (295)
Q Consensus 245 ~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~ 282 (295)
+..|...+..-... +..|+.-+.++..+..+
T Consensus 163 i~~l~~~~~~l~~~-------~~~iaaeq~~l~~~~~e 193 (420)
T COG4942 163 IDALKATLKQLAAV-------RAEIAAEQAELTTLLSE 193 (420)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 77777777654444 44455555555544433
No 8
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.84 E-value=4.9 Score=41.70 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhhhhhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTLRSYQDL-PPDKALAALAIEDKKRQYAAAEKYLEDVLHSALA 292 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL-Ppd~~lAr~kiEear~EL~~Le~~l~~~~~~~~~ 292 (295)
..|+..+++...|+.+...|+++|+-= |+ |.|+..-..+.+...|+|..+..+++...|.+..
T Consensus 301 ~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 301 SEIEEKEEEIEKLQKENDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367777788888899999999988754 44 5578888888999999999999999888887654
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.67 E-value=21 Score=40.21 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 240 ELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLH 288 (295)
Q Consensus 240 eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~ 288 (295)
++...+..++.+++.+-... ..|-.++++.+..|+.|..++.+..+
T Consensus 946 ~~~~~i~~le~~i~~lg~VN---~~Aiee~e~~~~r~~~l~~~~~dl~~ 991 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVN---LRAIEEYEEVEERYEELKSQREDLEE 991 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCC---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777766665444 56777888888888888877766544
No 10
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.63 E-value=3.9 Score=42.32 Aligned_cols=142 Identities=17% Similarity=0.242 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHH-----------------HHhHHHHHh
Q 022524 139 RKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENW-----------------KTNLAVMAS 201 (295)
Q Consensus 139 e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~-----------------~r~~k~L~a 201 (295)
++-.++..+..++.+|+.|-+-+.++..+-....+....+.+.+.....+.... .....-+..
T Consensus 276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lek 355 (569)
T PRK04778 276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEK 355 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHH
Confidence 444566677778888888888888888888777766666655543322222222 222444444
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524 202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEK 281 (295)
Q Consensus 202 K~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~ 281 (295)
++.++..++..+...++.....-+..-..+..+.+.+.++......+...|. +|..+-.-|+.+|+..+..+..+..
T Consensus 356 eL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~---~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 356 QLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ---GLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444433333321111112222222333333333333333332 4445555555555555555555554
Q ss_pred HH
Q 022524 282 YL 283 (295)
Q Consensus 282 ~l 283 (295)
.+
T Consensus 433 ~l 434 (569)
T PRK04778 433 YL 434 (569)
T ss_pred HH
Confidence 33
No 11
>PRK09039 hypothetical protein; Validated
Probab=92.62 E-value=7.6 Score=37.81 Aligned_cols=98 Identities=13% Similarity=0.165 Sum_probs=53.2
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHH
Q 022524 112 LANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMEN 191 (295)
Q Consensus 112 La~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~ 191 (295)
+++++.+|++.......+-..|.++..++..++..+.+++....... .....++..+..++.++........+
T Consensus 62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~-------~~~~~~~~~~~~l~~~L~~~k~~~se 134 (343)
T PRK09039 62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELA-------GAGAAAEGRAGELAQELDSEKQVSAR 134 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777777777778888888888777776665543333221 11112222333333333222233334
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHH
Q 022524 192 WKTNLAVMASKERQYLQQYNNYKAL 216 (295)
Q Consensus 192 ~~r~~k~L~aK~~Ey~~ri~~le~~ 216 (295)
..+.+..|...+..++.++++++..
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~ 159 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAA 159 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555554
No 12
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.26 E-value=20 Score=40.40 Aligned_cols=149 Identities=11% Similarity=0.201 Sum_probs=76.8
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhhccccc---hhhHHHHHHhHHHHHhhHHH
Q 022524 136 ISLRKTAVEEKRAKVQKESKILLDYT-------RKAIARLTYLKRTLGQLEDDVAPC---EAQMENWKTNLAVMASKERQ 205 (295)
Q Consensus 136 Lt~e~~~~e~~~~rl~~~i~~L~~~l-------~k~l~~~~~L~~~L~~L~~d~~~~---~~~~~~~~r~~k~L~aK~~E 205 (295)
+..+....++....+..++..+...+ .+.......|++++++++..+.+. .....+.+.++.-++.+..+
T Consensus 797 ~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~ 876 (1293)
T KOG0996|consen 797 HQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEE 876 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555444444444443333 344444455555555555542111 12222333344455555555
Q ss_pred H------HHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhh----cCCCCCHHHHHHHHHHHHHH
Q 022524 206 Y------LQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY----QDLPPDKALAALAIEDKKRQ 275 (295)
Q Consensus 206 y------~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy----~dLPpd~~lAr~kiEear~E 275 (295)
. ..+|+.++..+...|. ..+.....++..+.+++.-|.+.++.- ..=+-++..++.+|.++.++
T Consensus 877 ~qe~~~Kk~~i~~lq~~i~~i~~------e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~ 950 (1293)
T KOG0996|consen 877 LQEKAAKKARIKELQNKIDEIGG------EKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELERE 950 (1293)
T ss_pred HHHhhhHHHHHHHHHHHHHHhhc------hhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHH
Confidence 5 2445555555444444 122222244444455555444444332 34577888888888888888
Q ss_pred HHHHHHHHHHHHHHh
Q 022524 276 YAAAEKYLEDVLHSA 290 (295)
Q Consensus 276 L~~Le~~l~~~~~~~ 290 (295)
...++.++..+.+..
T Consensus 951 ~~~~e~e~~~L~e~~ 965 (1293)
T KOG0996|consen 951 IEDTEKELDDLTEEL 965 (1293)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777665543
No 13
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.10 E-value=9.7 Score=39.95 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=74.1
Q ss_pred HHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHh
Q 022524 172 KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDT 251 (295)
Q Consensus 172 ~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~k 251 (295)
.+.+.+++..+..+.............+.....+.+.++..++..+.+.|-+ ..+...++.....+++.+....+++
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~---~~~~r~~Le~ei~~le~e~~e~~~~ 284 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD---LFEEREQLERQLKEIEAARKANRAQ 284 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555544443444444555566777777777777887777777766652 5566778888999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 022524 252 LRSYQDLPPDKALAALAIEDKKRQYAAAE 280 (295)
Q Consensus 252 L~sy~dLPpd~~lAr~kiEear~EL~~Le 280 (295)
++.|.+=+--..++..-++.++.++....
T Consensus 285 l~~l~~~~~p~~l~~~ll~~~~~q~~~e~ 313 (650)
T TIGR03185 285 LRELAADPLPLLLIPNLLDSTKAQLQKEE 313 (650)
T ss_pred HHHHhcccCCHhhhHHHHHHHHHHHHHHH
Confidence 99999555556666777777777776643
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.94 E-value=25 Score=39.54 Aligned_cols=6 Identities=0% Similarity=0.113 Sum_probs=2.1
Q ss_pred hcHhHH
Q 022524 244 KTKPIL 249 (295)
Q Consensus 244 ~~k~L~ 249 (295)
+...++
T Consensus 885 ~~~~l~ 890 (1163)
T COG1196 885 EKEELE 890 (1163)
T ss_pred HHHHHH
Confidence 333333
No 15
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.70 E-value=12 Score=41.69 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=32.9
Q ss_pred HHHHHHHhcHhHHHhhhhh-----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 237 HRKELEKKTKPILDTLRSY-----QDLPPDKALAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 237 ~~~eL~~~~k~L~~kL~sy-----~dLPpd~~lAr~kiEear~EL~~Le~~l~~~ 286 (295)
.+.+++..+..++++|.-| +.+-+..+..+.+++.+++|.+.++.++..+
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L 420 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL 420 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555443 5677888888888888888888877665444
No 16
>PRK11637 AmiB activator; Provisional
Probab=91.52 E-value=3.9 Score=40.64 Aligned_cols=21 Identities=14% Similarity=-0.027 Sum_probs=8.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHH
Q 022524 128 SFLVAMGDISLRKTAVEEKRA 148 (295)
Q Consensus 128 sl~~ai~~Lt~e~~~~e~~~~ 148 (295)
..-..+-++..++...++...
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333
No 17
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.46 E-value=9.4 Score=39.05 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=52.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHH
Q 022524 196 LAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQ 275 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~E 275 (295)
++.|+.|.++|--.++.++ ..|+..++++..|+++...|.++|+--.==|.+..+--.+-|.+-||
T Consensus 318 ~~~mk~K~~~~~g~l~kl~--------------~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~re 383 (622)
T COG5185 318 VNAMKQKSQEWPGKLEKLK--------------SEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRE 383 (622)
T ss_pred HHHHHHHHHhcchHHHHHH--------------HHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4556666666655554443 36777778888888888888888876444455666666666777777
Q ss_pred HHHHHHHHHHHHH
Q 022524 276 YAAAEKYLEDVLH 288 (295)
Q Consensus 276 L~~Le~~l~~~~~ 288 (295)
|..+-.+-+.++.
T Consensus 384 L~~i~~~~~~L~k 396 (622)
T COG5185 384 LDKINIQSDKLTK 396 (622)
T ss_pred HHHhcchHHHHHH
Confidence 7776655544443
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.13 E-value=13 Score=42.23 Aligned_cols=49 Identities=14% Similarity=0.041 Sum_probs=26.9
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQDL--PPDKALAALAIEDKKRQYAAAEKYLE 284 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dL--Ppd~~lAr~kiEear~EL~~Le~~l~ 284 (295)
..+.....++..+...+..|.+. |..+.....++......+..++.+..
T Consensus 944 ~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~ 994 (1311)
T TIGR00606 944 NDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQE 994 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666677777777643 55455444555555544444444443
No 19
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.64 E-value=9.6 Score=32.29 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=25.9
Q ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHH
Q 022524 85 ARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTA 142 (295)
Q Consensus 85 ~~l~~lLe~lgls~~sLs~~G~~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~ 142 (295)
.++..-|.+.|+....+...+. +....+...++..|.+|-.....
T Consensus 5 ~yiN~~L~s~G~~~~~~~~~~~-------------~~~~~~~~~vin~i~~Ll~~~~r 49 (151)
T PF11559_consen 5 EYINQQLLSRGYPSDGLLFDSA-------------EESEDNDVRVINCIYDLLQQRDR 49 (151)
T ss_pred HHHHHHHHHCCCCCCCccCccc-------------ccccccHHHHHHHHHHHHHHHHH
Confidence 4566767788877655554443 34444555566666666554443
No 20
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=90.44 E-value=18 Score=34.98 Aligned_cols=86 Identities=13% Similarity=0.015 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 022524 201 SKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAE 280 (295)
Q Consensus 201 aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le 280 (295)
..+.+++.++..++.++....-.-.-.|..++.+...+..|++++....+++....+ .+......+++++++|.+-.+
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~--~~l~~~~~~~~~L~re~~~a~ 291 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLG--DSLNEQTADYQRLVLQNELAQ 291 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555544321101125889999999999999999998888876543 345556667888888877776
Q ss_pred HHHHHHHH
Q 022524 281 KYLEDVLH 288 (295)
Q Consensus 281 ~~l~~~~~ 288 (295)
..++..++
T Consensus 292 ~~y~~~l~ 299 (362)
T TIGR01010 292 QQLKAALT 299 (362)
T ss_pred HHHHHHHH
Confidence 66654443
No 21
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.67 E-value=30 Score=36.46 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022524 108 SAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEK----RAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVA 183 (295)
Q Consensus 108 aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~----~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~ 183 (295)
..+..-+++-.++..+-...++..++-+...++|+.+.+ ..-.+-++..+...+.+.-.++..|++....|.+.+.
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777877888899999999999999998887 3333557777777888888888888777677766543
Q ss_pred cch-----hhHHHHHHhHHHHHhh---HHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhh
Q 022524 184 PCE-----AQMENWKTNLAVMASK---ERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY 255 (295)
Q Consensus 184 ~~~-----~~~~~~~r~~k~L~aK---~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy 255 (295)
+.. .+..+--.+.-.|..| +.++-.-|...++++..--- -.-..|-++...+......+..++.+|..|
T Consensus 267 ~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e---~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 267 KANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEERE---KHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred hhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 211 1111111111122223 33344445555544321000 122356667777888888888999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524 256 QDLPPDKALAALAIEDKKRQYAAAEK 281 (295)
Q Consensus 256 ~dLPpd~~lAr~kiEear~EL~~Le~ 281 (295)
.| +++.|+||.-|.+
T Consensus 344 ----sD-------YeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 344 ----SD-------YEEIKKELSILKA 358 (629)
T ss_pred ----cc-------HHHHHHHHHHHHH
Confidence 44 4588888877653
No 22
>PRK02224 chromosome segregation protein; Provisional
Probab=89.59 E-value=26 Score=37.79 Aligned_cols=14 Identities=14% Similarity=0.181 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhcc
Q 022524 20 RIADVKAWLASQFE 33 (295)
Q Consensus 20 ~~s~V~sWL~~~f~ 33 (295)
....|+.|+...+|
T Consensus 110 ~~~~~~~~i~~llg 123 (880)
T PRK02224 110 GARDVREEVTELLR 123 (880)
T ss_pred ChHHHHHHHHHHHC
Confidence 44568889888875
No 23
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.59 E-value=9.2 Score=39.59 Aligned_cols=144 Identities=17% Similarity=0.239 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch-----------------hhHHHHHHhHHHHHh
Q 022524 139 RKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCE-----------------AQMENWKTNLAVMAS 201 (295)
Q Consensus 139 e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~-----------------~~~~~~~r~~k~L~a 201 (295)
++.+++..+..++.+|+.|-+-+.++..+-....+.+..+.+.+.... --.+.+..+.+.+..
T Consensus 272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~ 351 (560)
T PF06160_consen 272 ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEK 351 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 444566666677778888877778877777666655555544432211 111233444555666
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524 202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEK 281 (295)
Q Consensus 202 K~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~ 281 (295)
++.....+...+...+......-|..-..+..+.+.+.++.++...+.. ...+|+.|-..||.++...+..+..+..
T Consensus 352 ~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~---~l~~L~~dE~~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 352 QLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINE---SLQSLRKDEKEAREKLQKLKQKLREIKR 428 (560)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555554443232333444444444444444444443 3456788888888888888888888877
Q ss_pred HHHH
Q 022524 282 YLED 285 (295)
Q Consensus 282 ~l~~ 285 (295)
.+++
T Consensus 429 ~lek 432 (560)
T PF06160_consen 429 RLEK 432 (560)
T ss_pred HHHH
Confidence 7643
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=88.70 E-value=38 Score=36.38 Aligned_cols=11 Identities=18% Similarity=0.694 Sum_probs=6.1
Q ss_pred HHHHHHHHhhc
Q 022524 22 ADVKAWLASQF 32 (295)
Q Consensus 22 s~V~sWL~~~f 32 (295)
+.|..|+...+
T Consensus 111 ~~~~~~i~~~~ 121 (880)
T PRK03918 111 SSVREWVERLI 121 (880)
T ss_pred HHHHHHHHHhc
Confidence 34566666544
No 25
>PF13514 AAA_27: AAA domain
Probab=87.97 E-value=50 Score=36.96 Aligned_cols=70 Identities=23% Similarity=0.255 Sum_probs=42.7
Q ss_pred hcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcC-CC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 219 RVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQD-LP----------PDKALAALAIEDKKRQYAAAEKYLEDVL 287 (295)
Q Consensus 219 ~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~d-LP----------pd~~lAr~kiEear~EL~~Le~~l~~~~ 287 (295)
..|....-.-..+....+.+.++..++..++.+|....+ ++ .|++....+++.++.++..++.++....
T Consensus 837 ~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~ 916 (1111)
T PF13514_consen 837 QAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELEEELEELEEELEELQ 916 (1111)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356532222234445557888888888888888854332 11 2445556667777777777777766554
Q ss_pred H
Q 022524 288 H 288 (295)
Q Consensus 288 ~ 288 (295)
.
T Consensus 917 ~ 917 (1111)
T PF13514_consen 917 E 917 (1111)
T ss_pred H
Confidence 3
No 26
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.92 E-value=20 Score=32.38 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=42.2
Q ss_pred CchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022524 124 TELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLED 180 (295)
Q Consensus 124 ts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~ 180 (295)
|..++++..|.||+.--..+...+..+++.+++....-.+-...+..|++++..++.
T Consensus 1 ~~t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 1 PATSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999988877888888888888888776655555556777766666654
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.77 E-value=38 Score=35.30 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 264 LAALAIEDKKRQYAAAEKYLEDVLHS 289 (295)
Q Consensus 264 lAr~kiEear~EL~~Le~~l~~~~~~ 289 (295)
.-..+++.++.+|+.++.++...-|.
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~ 305 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQE 305 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466677777787777777655444
No 28
>PRK02224 chromosome segregation protein; Provisional
Probab=87.56 E-value=45 Score=35.95 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhcHhHHHhhhhhcC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 231 LVEMAEHRKELEKKTKPILDTLRSYQD----LPPDKALAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 231 l~~~~e~~~eL~~~~k~L~~kL~sy~d----LPpd~~lAr~kiEear~EL~~Le~~l~~~ 286 (295)
+....+.+..+.+++..|+..+..|.. +-+....+..+|.+..+++..++.++.+.
T Consensus 532 le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 591 (880)
T PRK02224 532 IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL 591 (880)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446666777777777777766665 55666666666666666666666665544
No 29
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.53 E-value=11 Score=40.20 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=15.5
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHhh
Q 022524 194 TNLAVMASKERQYLQQYNNYKALLN 218 (295)
Q Consensus 194 r~~k~L~aK~~Ey~~ri~~le~~l~ 218 (295)
+++..|..|+.+-+..-..+|++|.
T Consensus 488 q~l~~LEkrL~eE~~~R~~lEkQL~ 512 (697)
T PF09726_consen 488 QSLQQLEKRLAEERRQRASLEKQLQ 512 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666654
No 30
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.45 E-value=28 Score=33.45 Aligned_cols=44 Identities=7% Similarity=0.008 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 022524 111 VLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKES 154 (295)
Q Consensus 111 aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i 154 (295)
.|.+..+.+-+.-|=+.-|.++.-.|.+.+.+..+....++.++
T Consensus 55 sl~~~~~A~~~~~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~ 98 (325)
T PF08317_consen 55 SLEDYVVAGYCTVPMLELYQFSCRELKKYISEGRQIFEEIEEET 98 (325)
T ss_pred CHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666677777777777777666665555444444
No 31
>PRK11519 tyrosine kinase; Provisional
Probab=87.43 E-value=44 Score=35.64 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=50.8
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHH
Q 022524 193 KTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDK 272 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEea 272 (295)
...+..+.++..+.+.+.+.+... -| ..|..++.+......|.+++..++.++.. +| ..+.++.+.
T Consensus 310 l~~~~~l~~ql~~l~~~~~~l~~~---y~----~~hP~v~~l~~~~~~L~~~~~~l~~~~~~---lp----~~e~~~~~L 375 (719)
T PRK11519 310 LDSMVNIDAQLNELTFKEAEISKL---YT----KEHPAYRTLLEKRKALEDEKAKLNGRVTA---MP----KTQQEIVRL 375 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hc----ccCcHHHHHHHHHHHHHHHHHHHHHHHHh---cc----HHHHHHHHH
Confidence 334444555555554444433221 22 26788888888888888888888877764 44 355677777
Q ss_pred HHHHHHHHHHHHHHHH
Q 022524 273 KRQYAAAEKYLEDVLH 288 (295)
Q Consensus 273 r~EL~~Le~~l~~~~~ 288 (295)
+|+.+.-+.-++..++
T Consensus 376 ~Re~~~~~~lY~~lL~ 391 (719)
T PRK11519 376 TRDVESGQQVYMQLLN 391 (719)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777766666555443
No 32
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.06 E-value=48 Score=35.68 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=50.8
Q ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHH
Q 022524 129 FLVAMGDISLRKT-AVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYL 207 (295)
Q Consensus 129 l~~ai~~Lt~e~~-~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~ 207 (295)
|..|+--|..+.+ ..+..+.+++++++.|.....+.+..+..+.+..+.++.... ....+++-...|-+.+.
T Consensus 541 L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae-------~LaeR~e~a~d~Qe~L~ 613 (717)
T PF10168_consen 541 LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAE-------KLAERYEEAKDKQEKLM 613 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 4445444555533 344445578889999988888888888777755555543222 22224556666666777
Q ss_pred HHHHHHHHHhhh
Q 022524 208 QQYNNYKALLNR 219 (295)
Q Consensus 208 ~ri~~le~~l~~ 219 (295)
.|+..+-..+..
T Consensus 614 ~R~~~vl~~l~~ 625 (717)
T PF10168_consen 614 KRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHhc
Confidence 777666555543
No 33
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.03 E-value=23 Score=31.93 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHH
Q 022524 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQY 206 (295)
Q Consensus 127 ~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey 206 (295)
+.=.+-|..|.++++++.....++..+...|..--.+...++. .+++.-..+|--+..+...+..|..+++.+
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~-------k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~ 80 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQ-------KYEDTEAELPQLLQRHNEEVRVLRERLRKS 80 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678889999999988888887787777554444333333 333322333333444444555666666665
Q ss_pred HHHHHHHHHH
Q 022524 207 LQQYNNYKAL 216 (295)
Q Consensus 207 ~~ri~~le~~ 216 (295)
+++..+++..
T Consensus 81 q~~~r~~~~k 90 (194)
T PF15619_consen 81 QEQERELERK 90 (194)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 34
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.80 E-value=29 Score=32.92 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=52.4
Q ss_pred hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhh----h---cCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCC
Q 022524 187 AQMENWKTNLAVMASKERQYLQQYNNYKALLN----R---VGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLP 259 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~----~---~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLP 259 (295)
.....-..+++-|..++.+...+|......|. + .|-..+ ....|.. ++.+.++-.++-.+..=+..=.++-
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~-Yidvil~-SkSfsD~IsRvtAi~~iv~aDk~il 150 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATS-YIDVILN-SKSFSDLISRVTAISVIVDADKKIL 150 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhH-HHHHHHc-cCcHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444555666677777777666655444332 2 222221 2233332 2455555555555444444333333
Q ss_pred C-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 260 P-------DKALAALAIEDKKRQYAAAEKYLEDVLHS 289 (295)
Q Consensus 260 p-------d~~lAr~kiEear~EL~~Le~~l~~~~~~ 289 (295)
- .++..+..++....+|..+-.+++...++
T Consensus 151 e~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~ 187 (265)
T COG3883 151 EQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNS 187 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34556666677777777777777665543
No 35
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.58 E-value=38 Score=34.25 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022524 204 RQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 204 ~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l 283 (295)
.-|+....++++.+.. |. +-+.+.+.-+++.+...+.++.++.|.+|- |++.+.+- |+..+||+.|+...
T Consensus 317 ~AyksGs~alK~il~~-~~----s~ekVed~Ldev~et~d~~~EV~~~la~~~--~~~~d~~d---e~lEkEL~~L~~D~ 386 (439)
T KOG2911|consen 317 QAYKSGSEALKAILAQ-GG----STEKVEDVLDEVNETLDRQEEVEDALASYN--VNNIDFED---EDLEKELEDLEADE 386 (439)
T ss_pred HHHHHhHHHHHHHHhc-cC----ChhhHHHHHHHHHHHHhhHHHHHHHHhcCC--CCCCccch---HHHHHHHHHHHhcc
Confidence 3477777888877665 44 335677777888899999999999999874 45444332 35556777776654
No 36
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=86.55 E-value=80 Score=37.78 Aligned_cols=81 Identities=16% Similarity=0.063 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524 202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEK 281 (295)
Q Consensus 202 K~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~ 281 (295)
-++-+..||..+|.+|..-|-..--....+......+.++..++..=++.+..+++ +++....++...|+++...+.
T Consensus 1802 ~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~---~~dkl~~k~~~~krQleeaE~ 1878 (1930)
T KOG0161|consen 1802 QIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQD---LVDKLQAKIKQYKRQLEEAEE 1878 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH---HHHHHHHHHHHHHHhHHHHHH
Confidence 36666677777777765433311112223333333334444333333333333333 344455555666666666665
Q ss_pred HHHH
Q 022524 282 YLED 285 (295)
Q Consensus 282 ~l~~ 285 (295)
+-+.
T Consensus 1879 ~~~~ 1882 (1930)
T KOG0161|consen 1879 EANQ 1882 (1930)
T ss_pred HHHH
Confidence 5433
No 37
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.50 E-value=24 Score=31.64 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=37.8
Q ss_pred hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHh---------hh--cCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhh
Q 022524 187 AQMENWKTNLAVMASKERQYLQQYNNYKALL---------NR--VGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY 255 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l---------~~--~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy 255 (295)
........++.-|..|+.+++.+...+.... +. .|++ +-.-...+..+.+++..++.+...+
T Consensus 112 ~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~-------~~~a~~~~er~e~ki~~~ea~a~a~ 184 (221)
T PF04012_consen 112 AQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFS-------VSSAMDSFERMEEKIEEMEARAEAS 184 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555666666666666554443321 11 2222 2222355667778888888888888
Q ss_pred cCCCC
Q 022524 256 QDLPP 260 (295)
Q Consensus 256 ~dLPp 260 (295)
..|..
T Consensus 185 ~el~~ 189 (221)
T PF04012_consen 185 AELAD 189 (221)
T ss_pred HHhcc
Confidence 88874
No 38
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.71 E-value=27 Score=32.70 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=30.0
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022524 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182 (295)
Q Consensus 129 l~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~ 182 (295)
+-..|-+++.+...++-....+..+++.+...+..+......+...+..|+.++
T Consensus 59 lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~l 112 (312)
T PF00038_consen 59 LRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDL 112 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334444555555555555555555666666555666655555555555555443
No 39
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.61 E-value=42 Score=33.67 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 235 AEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 235 ~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~ 286 (295)
...+..+..+...|..++..+..---.......++....|+++..+..++..
T Consensus 323 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l 374 (498)
T TIGR03007 323 EAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQL 374 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655444333333344566666666666665555443
No 40
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.33 E-value=25 Score=35.24 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022524 263 ALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 263 ~lAr~kiEear~EL~~Le~~l 283 (295)
..++..++.++.++..+..++
T Consensus 320 ~~~~~~~~~l~~~~~~l~~~~ 340 (498)
T TIGR03007 320 AEAEAEIASLEARVAELTARI 340 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 41
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=84.85 E-value=33 Score=40.75 Aligned_cols=84 Identities=12% Similarity=0.187 Sum_probs=41.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHH
Q 022524 196 LAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQ 275 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~E 275 (295)
+.-++.+..++....+..+..+...+. .+..+...+..+.+.++.|..+++--.+-+-.-..+|.++|.++++
T Consensus 1057 ~~~~~~~~~el~~~l~kke~El~~l~~-------k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~d 1129 (1930)
T KOG0161|consen 1057 IEELKKQKEELDNQLKKKESELSQLQS-------KLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRD 1129 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333566666666666665555443332 2333334444444444444444444333333345566666666554
Q ss_pred H----HHHHHHHHHH
Q 022524 276 Y----AAAEKYLEDV 286 (295)
Q Consensus 276 L----~~Le~~l~~~ 286 (295)
| ..+..+|++.
T Consensus 1130 L~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1130 LSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 4 4444444444
No 42
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=84.35 E-value=62 Score=34.55 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=50.9
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHH
Q 022524 193 KTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDK 272 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEea 272 (295)
..++.-+.++..+.+.+.+.+... -|. .|..+..+......|.+++..++.++..+ | ..++++.+.
T Consensus 310 l~~~~~l~~ql~~l~~~~~~l~~~---~~~----~hP~v~~l~~~~~~L~~~~~~l~~~~~~~---p----~~e~~~~~L 375 (726)
T PRK09841 310 LEQIVNVDNQLNELTFREAEISQL---YKK----DHPTYRALLEKRQTLEQERKRLNKRVSAM---P----STQQEVLRL 375 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hcc----cCchHHHHHHHHHHHHHHHHHHHHHHHhc---c----HHHHHHHHH
Confidence 334444555555554444333221 232 67788888888888999998888887643 3 345677777
Q ss_pred HHHHHHHHHHHHHHHH
Q 022524 273 KRQYAAAEKYLEDVLH 288 (295)
Q Consensus 273 r~EL~~Le~~l~~~~~ 288 (295)
+|+.+..+.-++..++
T Consensus 376 ~R~~~~~~~lY~~lL~ 391 (726)
T PRK09841 376 SRDVEAGRAVYLQLLN 391 (726)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777666555433
No 43
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.06 E-value=28 Score=30.34 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 138 LRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLK 172 (295)
Q Consensus 138 ~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~ 172 (295)
.+..+..++..+++++++.+..++......+..++
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~ 115 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLK 115 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666555555555544
No 44
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=84.02 E-value=69 Score=34.85 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=27.2
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 112 LANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLK 172 (295)
Q Consensus 112 La~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~ 172 (295)
+-.+.+.||-+++.+..+..-+-+++..-.+ +..+|+.|..-++..-.....|.
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d-------~r~hi~~lkesl~~ke~~~~~Lq 342 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSD-------MRQHIEVLKESLRAKEQEAEMLQ 342 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777776555544444444433332 23355555555444444444444
No 45
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=84.01 E-value=36 Score=31.53 Aligned_cols=89 Identities=7% Similarity=0.106 Sum_probs=59.6
Q ss_pred hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCC-CCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHH
Q 022524 187 AQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGY-TPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALA 265 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~-~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lA 265 (295)
..++.-..+.+.|...+...+..|..+-.++...|. ....++..+..+-++...+.+.++ .. ++-+=...|
T Consensus 80 ~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr-------~r-~f~~~~~~A 151 (264)
T PF06008_consen 80 NNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMR-------KR-DFTPQRQNA 151 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHH-------hc-cchhHHHHH
Confidence 333444556777777778888888777766665555 345677777766555555554433 33 466777888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022524 266 ALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 266 r~kiEear~EL~~Le~~l 283 (295)
-.++.+|..=|.++...|
T Consensus 152 e~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 152 EDELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888888776
No 46
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.77 E-value=42 Score=32.21 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524 230 VLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEK 281 (295)
Q Consensus 230 ~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~ 281 (295)
.|.+..+...+++.++..++..++.-.+- + +.+|..++.++..|+.
T Consensus 245 ~i~~~~~~k~~l~~eI~e~~~~~~~~r~~--t----~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 245 KIEELEEQKQELLAEIAEAEKIREECRGW--T----RSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHHHH
Confidence 34444444555555555555444433322 1 1234455555555544
No 47
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=83.39 E-value=65 Score=34.04 Aligned_cols=81 Identities=11% Similarity=0.154 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhH-----HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHhHhHHHHHH
Q 022524 72 DFRQKAAEYRSQA-----ARIREILENVGLAQESLPSNVVSSAQVLANVANLLN-IRDTELSSFLVAMGDISLRKTAVEE 145 (295)
Q Consensus 72 d~~~~~~ey~~ea-----~~l~~lLe~lgls~~sLs~~G~~aL~aLa~~A~~Lg-~~dts~~sl~~ai~~Lt~e~~~~e~ 145 (295)
-+.....+|+... .....+|-+.-..-++|+.-...+=+++.++...|+ .|||-|. |..+..-+.. ...++.
T Consensus 44 ~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaPDP~pl-l~sa~~~l~k-~~~~~~ 121 (629)
T KOG0963|consen 44 RLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAPDPVPL-LASAAELLNK-QQKASE 121 (629)
T ss_pred HHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCchH-HHHHHHHhhh-hhhhhh
Confidence 5556667777431 222333322211136888888888899999998887 5777654 2222222222 222444
Q ss_pred HHHHHHHHH
Q 022524 146 KRAKVQKES 154 (295)
Q Consensus 146 ~~~rl~~~i 154 (295)
.++++..++
T Consensus 122 e~~~lk~~l 130 (629)
T KOG0963|consen 122 ENEELKEEL 130 (629)
T ss_pred hHHHHHHHH
Confidence 455444444
No 48
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=83.29 E-value=34 Score=30.68 Aligned_cols=103 Identities=15% Similarity=0.219 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHH
Q 022524 153 ESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLV 232 (295)
Q Consensus 153 ~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~ 232 (295)
+|..|+.+++.......+....++.|.+.+ .+++.|..+.-|+.-+++|+.|+.++++- +.|=+=.
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~L-----t~eemQe~i~~L~kev~~~~erl~~~k~g---------~~~vtpe 152 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSAL-----TTEEMQEEIQELKKEVAGYRERLKNIKAG---------TNHVTPE 152 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cccCCHH
Confidence 444444444444444444443444444332 23466677888888999999999888864 1222222
Q ss_pred HHHHHH-------HHHHHhcHhHHHhhhhhc-CCCCCHHHHHHHHHHHHHHH
Q 022524 233 EMAEHR-------KELEKKTKPILDTLRSYQ-DLPPDKALAALAIEDKKRQY 276 (295)
Q Consensus 233 ~~~e~~-------~eL~~~~k~L~~kL~sy~-dLPpd~~lAr~kiEear~EL 276 (295)
+++.-+ .+++....--..-+..+. |+|-+.+ +..+||
T Consensus 153 dk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~pk~ks-------el~eel 197 (201)
T KOG4603|consen 153 DKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGLPKKKS-------ELYEEL 197 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHH-------HHHHHh
Confidence 333222 334444333333343333 7888887 555554
No 49
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.19 E-value=68 Score=34.13 Aligned_cols=27 Identities=7% Similarity=0.201 Sum_probs=13.8
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 022524 131 VAMGDISLRKTAVEEKRAKVQKESKIL 157 (295)
Q Consensus 131 ~ai~~Lt~e~~~~e~~~~rl~~~i~~L 157 (295)
..|.+++.++..++.++...+.+.+.+
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665554444333344444
No 50
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=82.58 E-value=39 Score=30.92 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=38.7
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--------------chhhHHHHHHhHHHHHh
Q 022524 136 ISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAP--------------CEAQMENWKTNLAVMAS 201 (295)
Q Consensus 136 Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~--------------~~~~~~~~~r~~k~L~a 201 (295)
+..++-++++....++..++.......+.=+....|.+.+..++.++.. .....++..|..+.|..
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444333333333333334444455555554421 11333444556666666
Q ss_pred hHHHHHHHHHHHHHHhh
Q 022524 202 KERQYLQQYNNYKALLN 218 (295)
Q Consensus 202 K~~Ey~~ri~~le~~l~ 218 (295)
+....-.||..++.++.
T Consensus 86 r~~~~eeri~~lE~~l~ 102 (237)
T PF00261_consen 86 REQSDEERIEELEQQLK 102 (237)
T ss_dssp HHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666655555543
No 51
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=82.35 E-value=6.4 Score=31.09 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=49.4
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcC
Q 022524 194 TNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQD 257 (295)
Q Consensus 194 r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~d 257 (295)
..++-+..|+..+++++...+..|.+..+ |.+.-..++++...++.+..+.+++|..-++
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eL----s~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRREL----SPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCC----ChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45788999999999999999999887777 6678888888888888888888888776543
No 52
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=81.86 E-value=68 Score=33.24 Aligned_cols=85 Identities=16% Similarity=0.263 Sum_probs=64.2
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 022524 199 MASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAA 278 (295)
Q Consensus 199 L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~ 278 (295)
...++..|+..+..++..+..+++ |.++..-+ ..+.....++..|..+|.. -|=|+.....+++++...+..
T Consensus 416 Ar~kL~~~~~~L~~ikr~l~k~~l-pgip~~y~----~~~~~~~~~i~~l~~~L~~---g~VNm~ai~~e~~e~~~~~~~ 487 (569)
T PRK04778 416 AREKLERYRNKLHEIKRYLEKSNL-PGLPEDYL----EMFFEVSDEIEALAEELEE---KPINMEAVNRLLEEATEDVET 487 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHH----HHHHHHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHH
Confidence 455677777777777766666666 44442222 3345677888888888887 799999888899999999999
Q ss_pred HHHHHHHHHHHhh
Q 022524 279 AEKYLEDVLHSAL 291 (295)
Q Consensus 279 Le~~l~~~~~~~~ 291 (295)
+..+..+.+.++-
T Consensus 488 L~~q~~dL~~~a~ 500 (569)
T PRK04778 488 LEEETEELVENAT 500 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.45 E-value=1e+02 Score=35.03 Aligned_cols=10 Identities=30% Similarity=0.345 Sum_probs=4.9
Q ss_pred ccChHHHHHH
Q 022524 43 EYTSRSVAHL 52 (295)
Q Consensus 43 ErN~~Tl~~L 52 (295)
.+.+..+..|
T Consensus 774 ~~s~~~v~~l 783 (1293)
T KOG0996|consen 774 GVSKESVEKL 783 (1293)
T ss_pred CCCHHHHHHH
Confidence 4455555544
No 54
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.30 E-value=7.5 Score=33.64 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=42.3
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcC
Q 022524 193 KTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQD 257 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~d 257 (295)
...+.-|..++.+++..++.+++.|+...-.| +..++...+..|..++..++.+|..+++
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-----t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEP-----TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566778888888888888877776554322 3445666777888888888888888774
No 55
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=81.11 E-value=89 Score=34.04 Aligned_cols=172 Identities=12% Similarity=0.110 Sum_probs=78.9
Q ss_pred HHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHH
Q 022524 115 VANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKT 194 (295)
Q Consensus 115 ~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r 194 (295)
+..-|.+..-....+-.-|--|.-++...++....++..++.|...+...-.-+.....++..++.+...+..-.....-
T Consensus 306 ~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d 385 (775)
T PF10174_consen 306 LQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRD 385 (775)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333333334433344444444555555556666666665555555544444444444444443222222223333
Q ss_pred hHHHHHhhHHHHHHHHHHHHHH--------------hhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc-CCC
Q 022524 195 NLAVMASKERQYLQQYNNYKAL--------------LNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ-DLP 259 (295)
Q Consensus 195 ~~k~L~aK~~Ey~~ri~~le~~--------------l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~-dLP 259 (295)
..+.-..|+..++.+|.+++.. +.+ ..+..-+...+..+++.+.+....+..|+..-..+. ..-
T Consensus 386 ~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~ 464 (775)
T PF10174_consen 386 MLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQ 464 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433 333 444444555556666555555544444443311111 111
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 260 PDKALAALAIEDKKRQYAAAEKYLEDVL 287 (295)
Q Consensus 260 pd~~lAr~kiEear~EL~~Le~~l~~~~ 287 (295)
-....-+.++++++.++..|..+|.++-
T Consensus 465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~ 492 (775)
T PF10174_consen 465 EELETYQKELKELKAKLESLQKELSEKE 492 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 2234455566666666666666665553
No 56
>PRK11281 hypothetical protein; Provisional
Probab=80.78 E-value=1.1e+02 Score=34.80 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=29.5
Q ss_pred CCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022524 122 RDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (295)
Q Consensus 122 ~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~ 179 (295)
+..+...+-..+.++..++.+.+......+.++-.+++...+..+.+..-...+.+++
T Consensus 119 ~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~ 176 (1113)
T PRK11281 119 STLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR 176 (1113)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666655555555555555544444444333333333333
No 57
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.63 E-value=30 Score=32.06 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHH
Q 022524 227 SHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKA 263 (295)
Q Consensus 227 sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~ 263 (295)
.-..+..++++|..|+.++-.+ .+.|.||+|=+.
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~---R~e~lgl~~Lp~ 112 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINEL---RKEYLGLEPLPS 112 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCCCCc
Confidence 3456667778888888777666 455677776554
No 58
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.45 E-value=85 Score=36.18 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=27.3
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLH 288 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~ 288 (295)
+++.++.++++.+.+.+. .-+.....++..++..++++...+.+..+...
T Consensus 333 ~eL~el~~ql~~~~~~a~---~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~ 382 (1353)
T TIGR02680 333 EELERARADAEALQAAAA---DARQAIREAESRLEEERRRLDEEAGRLDDAER 382 (1353)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333322 33444566777777777777777766655433
No 59
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.28 E-value=82 Score=34.99 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=25.7
Q ss_pred cchhhHHHHHHhHHHHHhhHHHHHHHHHH------HHHHhhhcCCC
Q 022524 184 PCEAQMENWKTNLAVMASKERQYLQQYNN------YKALLNRVGYT 223 (295)
Q Consensus 184 ~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~------le~~l~~~g~~ 223 (295)
.+....+...|.++.+.+++.+++.+|-+ +-.+|.+.+|+
T Consensus 414 eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknln 459 (1243)
T KOG0971|consen 414 ELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLN 459 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccC
Confidence 34455566677777788888888877743 23456666663
No 60
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=79.75 E-value=1e+02 Score=33.93 Aligned_cols=95 Identities=8% Similarity=0.020 Sum_probs=52.1
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHH
Q 022524 191 NWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIE 270 (295)
Q Consensus 191 ~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiE 270 (295)
+..++.+-+..|..|+..+-.-+.....+..-.-...-+.+..+-+.-.++.+++..++.++-.|--+-.|-..|+.++.
T Consensus 341 Earrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~ 420 (1265)
T KOG0976|consen 341 EARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQ 420 (1265)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHH
Confidence 44555666666666665554333321110000000011112222234456667777888888888888888888888877
Q ss_pred HHHHHHHHHHHHHHH
Q 022524 271 DKKRQYAAAEKYLED 285 (295)
Q Consensus 271 ear~EL~~Le~~l~~ 285 (295)
+|..-+..+-..+-+
T Consensus 421 ~a~ekld~mgthl~m 435 (1265)
T KOG0976|consen 421 EALEKLDLMGTHLSM 435 (1265)
T ss_pred HHHHHHHHHhHHHHH
Confidence 777776666655543
No 61
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.56 E-value=50 Score=30.22 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022524 267 LAIEDKKRQYAAAEKYLED 285 (295)
Q Consensus 267 ~kiEear~EL~~Le~~l~~ 285 (295)
.+|...+..+..+..+|+.
T Consensus 211 ~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 211 DELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 62
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.37 E-value=40 Score=29.05 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 230 VLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLH 288 (295)
Q Consensus 230 ~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~ 288 (295)
.|.++.+++.+|+..++.|...|..+..-|++-+ .+..|+..+.|...++.+|...-+
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e-l~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEE-LREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677778888888999999999999999998877 788899999999999999887654
No 63
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.68 E-value=46 Score=35.81 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhh
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTL 252 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL 252 (295)
+.|.++.+++.++..+++.++++|
T Consensus 692 ~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 692 EILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666678888888888877765
No 64
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=78.32 E-value=1.2e+02 Score=34.05 Aligned_cols=115 Identities=14% Similarity=0.246 Sum_probs=63.3
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhccc----c---------------
Q 022524 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLK-------RTLGQLEDDVA----P--------------- 184 (295)
Q Consensus 131 ~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~-------~~L~~L~~d~~----~--------------- 184 (295)
..+++...++...++.....+-++..++..+++...+..... ..+.++..+.. +
T Consensus 274 ~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~ 353 (1074)
T KOG0250|consen 274 AWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREV 353 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555566666666666666555544 33444433321 0
Q ss_pred --chhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHh-hhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhh
Q 022524 185 --CEAQMENWKTNLAVMASKERQYLQQYNNYKALL-NRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTL 252 (295)
Q Consensus 185 --~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l-~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL 252 (295)
....-.+.+++++.++.....|..+|..++.+. +..|. .+.+.+.++..|..++..++..+
T Consensus 354 ~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~-------~~~e~e~k~~~L~~evek~e~~~ 417 (1074)
T KOG0250|consen 354 NDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGS-------ELEERENKLEQLKKEVEKLEEQI 417 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222336678888888888989998888886 22333 34444455555555555544433
No 65
>PHA02562 46 endonuclease subunit; Provisional
Probab=77.80 E-value=83 Score=31.82 Aligned_cols=60 Identities=8% Similarity=0.133 Sum_probs=27.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhh
Q 022524 196 LAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY 255 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy 255 (295)
+..+..+...+..++..++..+...+.+.....+.|.....++..++..+..+++.+..|
T Consensus 222 ~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 222 YDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444433333333334445555555555555555555555544
No 66
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=77.04 E-value=32 Score=30.77 Aligned_cols=93 Identities=16% Similarity=0.234 Sum_probs=73.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc-----CCCCCHHHHHHHHH
Q 022524 196 LAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ-----DLPPDKALAALAIE 270 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~-----dLPpd~~lAr~kiE 270 (295)
+..|..|..++++.++..++-+.... +.-++.++.+.+.+|++.++.-..+|+.|. ==|-|.+.+..+++
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~-----s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~ 162 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELS-----SALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQ 162 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 44588888888888887776655322 233677888899999999999999999985 46899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 022524 271 DKKRQYAAAEKYLEDVLHSALAT 293 (295)
Q Consensus 271 ear~EL~~Le~~l~~~~~~~~~~ 293 (295)
.+=.+-+....-|++.+-..++.
T Consensus 163 ~~~~~wrk~krmf~ei~d~~~e~ 185 (201)
T KOG4603|consen 163 KYCKEWRKRKRMFREIIDKLLEG 185 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999998888888877666554
No 67
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=76.77 E-value=1.2e+02 Score=32.94 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=37.0
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022524 236 EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSAL 291 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~~~~ 291 (295)
..+...-+++..+++-|..|.|+| |-+ +.++.|+.++.+|+..++..|
T Consensus 144 ~d~~~~a~~l~~m~~sL~~l~~~p-d~~-------~r~~~le~l~nrLEa~vsp~L 191 (766)
T PF10191_consen 144 GDIAKIADRLAEMQRSLAVLQDVP-DYE-------ERRQQLEALKNRLEALVSPQL 191 (766)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCC-chh-------HHHHHHHHHHHHHHHHhhHHH
Confidence 467778888888999999999987 666 677777777777777666544
No 68
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.54 E-value=47 Score=29.65 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=49.9
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCC
Q 022524 191 NWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPD 261 (295)
Q Consensus 191 ~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd 261 (295)
..++.+.-|..++.+++.++..++..+........-+ ..-..+.+.+.+|..+.+.|+.+|..|..--|.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3355677788888888888888887765432222234 344445589999999999999999999986443
No 69
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.41 E-value=95 Score=31.78 Aligned_cols=92 Identities=12% Similarity=0.176 Sum_probs=57.5
Q ss_pred cchhhHHHHHHhHHHHHhhHHHHHHHHHHHH----HHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcH---hHHHhhhh-h
Q 022524 184 PCEAQMENWKTNLAVMASKERQYLQQYNNYK----ALLNRVGYTPEISHGVLVEMAEHRKELEKKTK---PILDTLRS-Y 255 (295)
Q Consensus 184 ~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le----~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k---~L~~kL~s-y 255 (295)
++..+..+-.+++..|+..-..|+.-...-. ..+...+.+.+- ...|.+++..+..+-+++. .+..+|++ .
T Consensus 297 KL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsel 375 (521)
T KOG1937|consen 297 KLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSEL 375 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445555556666667666666665543322 233445664332 5678888888888777777 78888876 4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Q 022524 256 QDLPPDKALAALAIEDKKRQYAA 278 (295)
Q Consensus 256 ~dLPpd~~lAr~kiEear~EL~~ 278 (295)
..||+|+. |..+..--.|+..
T Consensus 376 e~lp~dv~--rk~ytqrikEi~g 396 (521)
T KOG1937|consen 376 EKLPDDVQ--RKVYTQRIKEIDG 396 (521)
T ss_pred hcCCchhH--HHHHHHHHHHHHh
Confidence 58999998 5555544444443
No 70
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.28 E-value=99 Score=33.38 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=28.5
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l 283 (295)
.+|.+|.++-+.|.++|..+ ...+|++|..|.|+.+++.+.
T Consensus 97 ~dyselEeENislQKqvs~L-------k~sQvefE~~Khei~rl~Ee~ 137 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVL-------KQSQVEFEGLKHEIKRLEEEI 137 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHH
Confidence 56667777777787777654 456777777777777776554
No 71
>PTZ00464 SNF-7-like protein; Provisional
Probab=74.93 E-value=67 Score=29.31 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=79.8
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhhhccccchhhHHHHHHhHH
Q 022524 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRK---------AIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLA 197 (295)
Q Consensus 127 ~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k---------~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k 197 (295)
.+.-.++-.+......++.+..+++.++.....++++ +..++..|+ .-+-++..+ .++..++-|+.
T Consensus 14 ~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK-~KK~~E~ql----~~l~~q~~nle 88 (211)
T PTZ00464 14 PTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQ-QKRMYQNQQ----DMMMQQQFNMD 88 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHH
Confidence 3455666666666666666666665555555444321 222333332 112222222 23344444444
Q ss_pred HHHhhHHHHHHHHHH---HHH---HhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHH
Q 022524 198 VMASKERQYLQQYNN---YKA---LLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIED 271 (295)
Q Consensus 198 ~L~aK~~Ey~~ri~~---le~---~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEe 271 (295)
.+...+.--+.-... ++. .|... ...++.+.|..+..++.+..+....+..-|..-.+.|.+++ =++
T Consensus 89 q~~~~ie~a~~~~~vv~amk~g~kaLK~~--~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~D-----EdE 161 (211)
T PTZ00464 89 QLQFTTESVKDTKVQVDAMKQAAKTLKKQ--FKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDID-----EDE 161 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-----HHH
Confidence 444443333322221 111 11111 12246788888889999999999999999987666665443 237
Q ss_pred HHHHHHHHHHHHH
Q 022524 272 KKRQYAAAEKYLE 284 (295)
Q Consensus 272 ar~EL~~Le~~l~ 284 (295)
.-.||..|+.+..
T Consensus 162 Le~ELe~Le~e~~ 174 (211)
T PTZ00464 162 MLGELDALDFDME 174 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 8888998888753
No 72
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=73.96 E-value=87 Score=30.18 Aligned_cols=18 Identities=0% Similarity=0.123 Sum_probs=10.9
Q ss_pred HHHHHHHHhHhHHHHHHH
Q 022524 129 FLVAMGDISLRKTAVEEK 146 (295)
Q Consensus 129 l~~ai~~Lt~e~~~~e~~ 146 (295)
|+.-|.+|..++...+.+
T Consensus 136 lvq~I~~L~k~le~~~k~ 153 (294)
T COG1340 136 LVQKIKELRKELEDAKKA 153 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666555433
No 73
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=73.84 E-value=84 Score=29.92 Aligned_cols=177 Identities=14% Similarity=0.176 Sum_probs=87.8
Q ss_pred hHHHhHHHHHHHHHHHHHh---hhHHHHHHHHHhcccc-ccCCC---hhHHHHHHHHHHHHHHcCCCC------CchhHH
Q 022524 63 TKAANIVAADFRQKAAEYR---SQAARIREILENVGLA-QESLP---SNVVSSAQVLANVANLLNIRD------TELSSF 129 (295)
Q Consensus 63 D~e~~Ll~~d~~~~~~ey~---~ea~~l~~lLe~lgls-~~sLs---~~G~~aL~aLa~~A~~Lg~~d------ts~~sl 129 (295)
|++..-++.+-.-....|+ +....++.|++..|=- ..+.. .-=+.||+.|+++-..|.-.. .++...
T Consensus 75 ~~e~~Sv~ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~ 154 (269)
T PF05278_consen 75 DEEMSSVISESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEM 154 (269)
T ss_pred chhhhhccccceeeECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHH
Confidence 4444445544444455565 4467788888765411 11111 344678999999998885322 133334
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHH
Q 022524 130 LVAMGDISLRKTAVEEKRAKVQKESKILLDYTRK-AIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQ 208 (295)
Q Consensus 130 ~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k-~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ 208 (295)
...+.||.+--+++.=.+. +++.+..+... ....+...++ +.....+......++...-.++....++.|.++
T Consensus 155 ~~~l~DLesa~vkV~WLR~----~L~Ei~Ea~e~~~~~~~~e~ek--e~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~ 228 (269)
T PF05278_consen 155 IATLKDLESAKVKVDWLRS----KLEEILEAKEIYDQHETREEEK--EEKDRKLELKKEELEELEEELKQKEKEVKEIKE 228 (269)
T ss_pred HHHHHHHHHcCcchHHHHH----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444432222 22222211000 0000011000 000000000111122223344455555666666
Q ss_pred HHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCC
Q 022524 209 QYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLP 259 (295)
Q Consensus 209 ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLP 259 (295)
||..... .+.++..+-..+...+.-++.+|+.|+|=|
T Consensus 229 ~i~e~~~--------------rl~~l~~~~~~l~k~~~~~~sKV~kf~~~s 265 (269)
T PF05278_consen 229 RITEMKG--------------RLGELEMESTRLSKTIKSIKSKVEKFHGKS 265 (269)
T ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 6654443 466666777788888999999999999844
No 74
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=73.79 E-value=79 Score=29.58 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhcHhHHHhhhhhcCC
Q 022524 231 LVEMAEHRKELEKKTKPILDTLRSYQDL 258 (295)
Q Consensus 231 l~~~~e~~~eL~~~~k~L~~kL~sy~dL 258 (295)
+.....+|.+|..-+..|+..|..|..|
T Consensus 278 ~~~~~~ey~~Ll~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 278 MARQLREYQELLDVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333466777777778888888887654
No 75
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=73.66 E-value=84 Score=29.85 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=45.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-------cch-------hhHHHHHH
Q 022524 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVA-------PCE-------AQMENWKT 194 (295)
Q Consensus 129 l~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~-------~~~-------~~~~~~~r 194 (295)
+-.+|-++..++..++++...+...-..|..++.|+-..+..-++.|..|++--+ +++ ..--...|
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfR 246 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFR 246 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666666666777777777666666666666654211 111 11112356
Q ss_pred hHHHHHhhHHHHH
Q 022524 195 NLAVMASKERQYL 207 (295)
Q Consensus 195 ~~k~L~aK~~Ey~ 207 (295)
|+.+|...+.+|.
T Consensus 247 Nl~yLe~qle~~~ 259 (267)
T PF10234_consen 247 NLDYLEHQLEEYN 259 (267)
T ss_pred hHHHHHHHHHHHH
Confidence 7777777776664
No 76
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=72.80 E-value=79 Score=29.15 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=15.0
Q ss_pred CCchhHHHHHHHHHhHhHHHHHHHHH
Q 022524 123 DTELSSFLVAMGDISLRKTAVEEKRA 148 (295)
Q Consensus 123 dts~~sl~~ai~~Lt~e~~~~e~~~~ 148 (295)
||- -.+-..|-|...++.++.+...
T Consensus 24 Dp~-~~l~Q~ird~~~~l~~ar~~~A 48 (225)
T COG1842 24 DPE-KMLEQAIRDMESELAKARQALA 48 (225)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4455666666666666666655
No 77
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=72.70 E-value=55 Score=33.74 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=18.0
Q ss_pred HHHHhcHhHHHhhhhhcCCCCCHHHHHHHH
Q 022524 240 ELEKKTKPILDTLRSYQDLPPDKALAALAI 269 (295)
Q Consensus 240 eL~~~~k~L~~kL~sy~dLPpd~~lAr~ki 269 (295)
+.....+.|+++++.|.+|-.++..-+..|
T Consensus 404 eaq~~~~slek~~~~~~sl~~~i~~~~~~i 433 (622)
T COG5185 404 EAQGIFKSLEKTLRQYDSLIQNITRSRSQI 433 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 344455667777777777666665554443
No 78
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=72.25 E-value=82 Score=29.11 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=17.0
Q ss_pred HHHHHhccccccCCChhHHHHHHHHHHHHHHcCCC
Q 022524 88 REILENVGLAQESLPSNVVSSAQVLANVANLLNIR 122 (295)
Q Consensus 88 ~~lLe~lgls~~sLs~~G~~aL~aLa~~A~~Lg~~ 122 (295)
+.+|.++..+...++.+. ..+..+.++...|.-.
T Consensus 3 ~~~l~~~n~~t~~~~~~~-~l~~~~e~~~~~L~~~ 36 (264)
T PF06008_consen 3 DSQLQSVNALTGAWPAPY-KLLSSIEDLTNQLRSY 36 (264)
T ss_pred HHHHhcCcchhhhhhhHH-HHHHHHHHHHHHHHHH
Confidence 444555543334444333 2344477777766544
No 79
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=72.15 E-value=95 Score=29.81 Aligned_cols=15 Identities=7% Similarity=0.102 Sum_probs=5.6
Q ss_pred HHHHHhhHHHHHHHH
Q 022524 196 LAVMASKERQYLQQY 210 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri 210 (295)
++.+......++.++
T Consensus 167 l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 167 LQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=71.84 E-value=1.5e+02 Score=31.92 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=53.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCC-CCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhh----hcCCCCCHHHHHHHHH
Q 022524 196 LAVMASKERQYLQQYNNYKALLNRVGY-TPEISHGVLVEMAEHRKELEKKTKPILDTLRS----YQDLPPDKALAALAIE 270 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l~~~g~-~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~s----y~dLPpd~~lAr~kiE 270 (295)
++.|..-+..-.+++..++..+..... +.. ++..+..+..++..+.++..-|+..|.. =+||=.-+--||.+||
T Consensus 554 ~~~lr~elk~kee~~~~~e~~~~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~e 632 (697)
T PF09726_consen 554 LKKLRRELKQKEEQIRELESELQELRKYEKE-SEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLE 632 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555556555432222 111 4566777778888888888888877754 3455555566666776
Q ss_pred HHHHHHHHHHHHHHHH
Q 022524 271 DKKRQYAAAEKYLEDV 286 (295)
Q Consensus 271 ear~EL~~Le~~l~~~ 286 (295)
.+...+..=+.++.++
T Consensus 633 i~~~~~~~~d~ei~~l 648 (697)
T PF09726_consen 633 IAQGQLRKKDKEIEEL 648 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665555555433
No 81
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=70.90 E-value=21 Score=31.83 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhc---------CCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHH
Q 022524 196 LAVMASKERQYLQQYNNYKALLNRV---------GYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAA 266 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l~~~---------g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr 266 (295)
+.-|.+|+.+|+.+++.++.+++.. +. ...+....+.+.+..|.++..--+.=...-.-|=--.+.|+
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~---~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~ 94 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRR---SEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQAR 94 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCccccccc---ccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022524 267 LAIEDKKRQYAAAEKYLEDVLHSA 290 (295)
Q Consensus 267 ~kiEear~EL~~Le~~l~~~~~~~ 290 (295)
...+.+..++..++..+.......
T Consensus 95 ~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 95 KANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 82
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=70.60 E-value=1.1e+02 Score=29.78 Aligned_cols=136 Identities=11% Similarity=0.125 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHh-HHHHHhhHH
Q 022524 127 SSFLVAMGDISLRKTAVEEKRAKVQ-KESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTN-LAVMASKER 204 (295)
Q Consensus 127 ~sl~~ai~~Lt~e~~~~e~~~~rl~-~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~-~k~L~aK~~ 204 (295)
-+|..-|..|..+..+++.+..+-+ ..+..|..+|.+--+........|..|..+-..++...+.-+-- +.-|-.+..
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~ 188 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMD 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777665322 23455555544433333333334444443311122111111100 112233333
Q ss_pred HHHHHHHHHHHHhhh---cCCCCCCc------HHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCH
Q 022524 205 QYLQQYNNYKALLNR---VGYTPEIS------HGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDK 262 (295)
Q Consensus 205 Ey~~ri~~le~~l~~---~g~~~s~s------h~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~ 262 (295)
.+...-..++..|.. .++.|.-+ ..+...++-++..|..++.-|+.+|...+-=+.-.
T Consensus 189 ~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k 255 (310)
T PF09755_consen 189 KLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEK 255 (310)
T ss_pred HHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444442 23322211 11335566888889989999999888666544333
No 83
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.41 E-value=1.2e+02 Score=33.13 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=17.9
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 255 YQDLPPDKALAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 255 y~dLPpd~~lAr~kiEear~EL~~Le~~l~~~ 286 (295)
|.+|-+-+..+..+++.++.....|+.+++..
T Consensus 661 ~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~e 692 (769)
T PF05911_consen 661 YESLETRLKDLEAEAEELQSKISSLEEELEKE 692 (769)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445566666666666666666544
No 84
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=68.24 E-value=25 Score=36.68 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=50.8
Q ss_pred hhHHHHHHhHHHH--HhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc-CCCCCHH
Q 022524 187 AQMENWKTNLAVM--ASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ-DLPPDKA 263 (295)
Q Consensus 187 ~~~~~~~r~~k~L--~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~-dLPpd~~ 263 (295)
..-..|...++-| +.+..+|+.|+..++. .++. +-..|.+..+++..|+.+.+..+.++++|. +|-.++.
T Consensus 175 ~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~----~~ik---~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~ 247 (555)
T TIGR03545 175 AMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK----KDIK---NPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKK 247 (555)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHh----ccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4445787778888 7779999999977776 3442 456788888888888888888888887754 4444444
No 85
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=68.19 E-value=57 Score=27.24 Aligned_cols=89 Identities=11% Similarity=0.143 Sum_probs=55.4
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc-CCCCCHHHHHHHH
Q 022524 191 NWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ-DLPPDKALAALAI 269 (295)
Q Consensus 191 ~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~-dLPpd~~lAr~ki 269 (295)
++...+..|+..+.+|.++|..+..-.. ..++.+-.+++.+..=+=+-..+.-.|++-. .=.......+..|
T Consensus 17 ~~~~~t~~Lk~ec~~F~~ki~~F~~iv~-------~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I 89 (120)
T PF14931_consen 17 EKADQTQELKEECKEFVEKISEFQKIVK-------GFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALI 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Confidence 5566677888889999999888776411 1234444444444444444445555555443 2234455667788
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022524 270 EDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 270 Eear~EL~~Le~~l~~~ 286 (295)
.+.+.||+++..+++.+
T Consensus 90 ~Ek~~eLERl~~E~~sL 106 (120)
T PF14931_consen 90 AEKKMELERLRSEYESL 106 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888887654
No 86
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=68.13 E-value=1.2e+02 Score=29.43 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=29.3
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCCCCCHH-------------HHHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQDLPPDKA-------------LAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~-------------lAr~kiEear~EL~~Le~~l 283 (295)
+....|...+.-|..+|..-..=||+|. ..-.-|..+|.|+.+|..+|
T Consensus 185 Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL 245 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQL 245 (310)
T ss_pred HHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4566888889999999985333366655 12233445555555555444
No 87
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=67.75 E-value=1.3e+02 Score=33.83 Aligned_cols=123 Identities=12% Similarity=0.190 Sum_probs=59.3
Q ss_pred CCCCchhHH-HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHH
Q 022524 121 IRDTELSSF-LVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVM 199 (295)
Q Consensus 121 ~~dts~~sl-~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L 199 (295)
..++++.++ +..=+.|..++.+++.++.+++.+++.= ...+..++..|..++.+..++ ++.+..|+
T Consensus 159 ~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK-------~enll~lr~eLddleae~~kl------rqe~~e~l 225 (1195)
T KOG4643|consen 159 ELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEK-------FENLLRLRNELDDLEAEISKL------RQEIEEFL 225 (1195)
T ss_pred CCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 345555553 3344567777778877777665554433 344445554445544443322 22223332
Q ss_pred Hh--hHHHHHHHHHHHHHHhhhcC--C-----CCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc
Q 022524 200 AS--KERQYLQQYNNYKALLNRVG--Y-----TPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ 256 (295)
Q Consensus 200 ~a--K~~Ey~~ri~~le~~l~~~g--~-----~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~ 256 (295)
.- ...-|++.+.++...-...| + |....-..+.++.+.-..|.+.+.-|+.+|+-|.
T Consensus 226 ~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lr 291 (1195)
T KOG4643|consen 226 DEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLR 291 (1195)
T ss_pred HHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 22 23345555554444322222 1 1111222344444555566666777777776664
No 88
>PRK11415 hypothetical protein; Provisional
Probab=67.49 E-value=52 Score=24.97 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022524 204 RQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 204 ~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l 283 (295)
|||++.|..+... -.....+.+.+.+|..++..++..- -|++ -.+|++.|++=-.|..++
T Consensus 3 pe~~d~I~~Lk~~-----------D~~F~~L~~~h~~Ld~~I~~lE~~~-----~~~~----d~~i~~LKk~KL~LKDeI 62 (74)
T PRK11415 3 PEYRDLISRLKNE-----------NPRFMSLFDKHNKLDHEIARKEGSD-----GRGY----NAEVVRMKKQKLQLKDEM 62 (74)
T ss_pred chHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHHHHHcCC-----CCCC----HHHHHHHHHHHHHhHHHH
Confidence 7899999888763 2467777788888888888777653 2333 235777887777777777
Q ss_pred HHHHHH
Q 022524 284 EDVLHS 289 (295)
Q Consensus 284 ~~~~~~ 289 (295)
...+..
T Consensus 63 ~~~L~~ 68 (74)
T PRK11415 63 LKILQQ 68 (74)
T ss_pred HHHHHH
Confidence 666543
No 89
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=67.25 E-value=38 Score=32.70 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCC-----CcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCH----
Q 022524 192 WKTNLAVMASKERQYLQQYNNYKALLNRVGYTPE-----ISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDK---- 262 (295)
Q Consensus 192 ~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s-----~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~---- 262 (295)
|.++++--+.+..+|-+.+-.+...+..+....- -..++|.+....+.+++.++..|+..++.|..-..+.
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~ 118 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITE 118 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022524 263 -----------ALAALAIEDKKRQYAAAEKYLEDVLHSALAT 293 (295)
Q Consensus 263 -----------~lAr~kiEear~EL~~Le~~l~~~~~~~~~~ 293 (295)
..+-.++.++.++|...+.++++..+.+-.+
T Consensus 119 ~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~ 160 (301)
T PF06120_consen 119 NGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASET 160 (301)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 90
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.98 E-value=2.3e+02 Score=32.23 Aligned_cols=30 Identities=7% Similarity=0.029 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 022524 125 ELSSFLVAMGDISLRKTAVEEKRAKVQKES 154 (295)
Q Consensus 125 s~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i 154 (295)
+...+-..++....++.+..++....+.+.
T Consensus 103 s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 103 STDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445555555555555555555444433333
No 91
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=66.61 E-value=1.5e+02 Score=29.98 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=31.3
Q ss_pred CCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 123 DTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTY 170 (295)
Q Consensus 123 dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~ 170 (295)
.++..++-++++....++..++..+..++.++..|...-+..-..+..
T Consensus 72 e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~ 119 (420)
T COG4942 72 ETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAE 119 (420)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777777776554444444333
No 92
>PF15294 Leu_zip: Leucine zipper
Probab=66.30 E-value=37 Score=32.43 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=21.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022524 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLED 180 (295)
Q Consensus 137 t~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~ 180 (295)
..++.++.+.+..+.-++..+...+..-+..-..|..+|++|+.
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555555555555555543
No 93
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=66.03 E-value=84 Score=26.80 Aligned_cols=10 Identities=0% Similarity=0.265 Sum_probs=3.6
Q ss_pred HHHHHhhHHH
Q 022524 196 LAVMASKERQ 205 (295)
Q Consensus 196 ~k~L~aK~~E 205 (295)
+..|...+.+
T Consensus 82 iq~LEeele~ 91 (143)
T PF12718_consen 82 IQLLEEELEE 91 (143)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 94
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.91 E-value=49 Score=32.58 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=24.7
Q ss_pred hhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHH
Q 022524 176 GQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNN 212 (295)
Q Consensus 176 ~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~ 212 (295)
++|+.....++-++...+.|++.|++|.+|-..+..+
T Consensus 249 ~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 249 QKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 3333333345566777788999999999995554444
No 95
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.10 E-value=69 Score=28.84 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 022524 161 TRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKA 215 (295)
Q Consensus 161 l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~ 215 (295)
+...+.-+..|++.+.+++.........+.+....-+-|..-+...+..+..++.
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k 76 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRK 76 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4455555555555555554332222333344433333343333333333333333
No 96
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=65.03 E-value=1.4e+02 Score=31.78 Aligned_cols=69 Identities=12% Similarity=0.244 Sum_probs=42.0
Q ss_pred hHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhh----cCCCCC----------CcHHHHHHHHHHHHHHHHhcHhHHHhhh
Q 022524 188 QMENWKTNLAVMASKERQYLQQYNNYKALLNR----VGYTPE----------ISHGVLVEMAEHRKELEKKTKPILDTLR 253 (295)
Q Consensus 188 ~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~----~g~~~s----------~sh~~l~~~~e~~~eL~~~~k~L~~kL~ 253 (295)
....++..+..|......++.++..++..+.. +.++++ ++...-....+.+..|+.+...|..+|+
T Consensus 504 ~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~ 583 (722)
T PF05557_consen 504 ELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLR 583 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777777777777777777777665 223333 2222222234777888888888888885
Q ss_pred hhc
Q 022524 254 SYQ 256 (295)
Q Consensus 254 sy~ 256 (295)
.-.
T Consensus 584 ~le 586 (722)
T PF05557_consen 584 SLE 586 (722)
T ss_dssp HHT
T ss_pred hcc
Confidence 544
No 97
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=64.95 E-value=69 Score=25.46 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhhhh
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTLRS 254 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL~s 254 (295)
..+-.+++.+..|-+-++.|+.+++.
T Consensus 73 ~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 73 EQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666666677777777777777653
No 98
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.39 E-value=2.5e+02 Score=31.67 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHHHHHHhcHhHHHhhh
Q 022524 227 SHGVLVEMAEHRKELEKKTKPILDTLR 253 (295)
Q Consensus 227 sh~~l~~~~e~~~eL~~~~k~L~~kL~ 253 (295)
-|..|..+...+.+..++++.|...+.
T Consensus 416 lq~e~~~~e~~l~~~~e~i~~l~~si~ 442 (1200)
T KOG0964|consen 416 LQKEIEDLESELKEKLEEIKELESSIN 442 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 344444444455555555555554444
No 99
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=63.48 E-value=1.2e+02 Score=27.58 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=21.8
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLE 284 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~ 284 (295)
..+.+-..++..|.+.|..|.-+ .++.|.|-.+|+.++.
T Consensus 151 a~l~e~t~~i~eL~~~ieEy~~~----------teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 151 AILSERTQQIEELKKTIEEYRSI----------TEELRLEKSRLEEQLS 189 (193)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 33444455666666666666443 3455566666665553
No 100
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=63.45 E-value=1.2e+02 Score=31.42 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=21.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 022524 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYT 161 (295)
Q Consensus 129 l~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l 161 (295)
|...|.+|+.++..++.+......+-.+|+..+
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL 450 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRL 450 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777766665555666664443
No 101
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.96 E-value=99 Score=26.56 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=32.0
Q ss_pred hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHH
Q 022524 187 AQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALA 265 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lA 265 (295)
..++....-+..|..++.........++..|.. .-..-..+.+.+...+.++..|+....+|..+-......
T Consensus 45 ~daEn~k~eie~L~~el~~lt~el~~L~~EL~~-------l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 45 LDAENSKAEIETLEEELEELTSELNQLELELDT-------LRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444444455555555554444333332221 001222223444455555666666665555554444443
No 102
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=62.88 E-value=1.2e+02 Score=27.35 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=21.7
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHh
Q 022524 190 ENWKTNLAVMASKERQYLQQYNNYKALL 217 (295)
Q Consensus 190 ~~~~r~~k~L~aK~~Ey~~ri~~le~~l 217 (295)
+..++.+..+..++.+-..+|..++.++
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888888888888888888764
No 103
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=62.71 E-value=1.6e+02 Score=28.91 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=30.3
Q ss_pred HHHHHHHcCCCC---------CchhHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHHHH
Q 022524 112 LANVANLLNIRD---------TELSSFLVAMGDISLRKTAVEE-KRAKVQKESKILLD 159 (295)
Q Consensus 112 La~~A~~Lg~~d---------ts~~sl~~ai~~Lt~e~~~~e~-~~~rl~~~i~~L~~ 159 (295)
|+.+-..+|+.. +.+.++.++|..|+..+.-+.. ....+++++..|..
T Consensus 218 L~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~ 275 (388)
T PF04912_consen 218 LARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLS 275 (388)
T ss_pred HHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 444556789832 2466799999999988877643 22344555555533
No 104
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.55 E-value=73 Score=28.94 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=13.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhh
Q 022524 197 AVMASKERQYLQQYNNYKALLNR 219 (295)
Q Consensus 197 k~L~aK~~Ey~~ri~~le~~l~~ 219 (295)
..+..++++++.+++.++..|+.
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666655543
No 105
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=62.15 E-value=1.3e+02 Score=27.54 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 260 PDKALAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 260 pd~~lAr~kiEear~EL~~Le~~l~~~ 286 (295)
.++..-+.++|.++.||.....+.++.
T Consensus 131 ~~~~~l~~e~erL~aeL~~er~~~e~q 157 (202)
T PF06818_consen 131 DELGSLRREVERLRAELQRERQRREEQ 157 (202)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHH
Confidence 345556667777777777665555443
No 106
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.63 E-value=2.3e+02 Score=30.47 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-------
Q 022524 110 QVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV------- 182 (295)
Q Consensus 110 ~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~------- 182 (295)
+.++++-.+-.-.|.+++.+-..+...--+...+..-..+.++++..-+..+..+...+......+.++..+.
T Consensus 151 ~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~ 230 (716)
T KOG4593|consen 151 DKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELE 230 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred ---------ccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhh
Q 022524 183 ---------APCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLR 253 (295)
Q Consensus 183 ---------~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~ 253 (295)
.+....+.+..+.+.++..+..+++..++.+.......|. |++++..|+.+|.
T Consensus 231 ~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~------------------LqeE~e~Lqskl~ 292 (716)
T KOG4593|consen 231 QQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGL------------------LQEELEGLQSKLG 292 (716)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH------------------HHHHHHHHHHHHH
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524 254 SYQDLPPDKALAALAIEDKKRQYAAAEK 281 (295)
Q Consensus 254 sy~dLPpd~~lAr~kiEear~EL~~Le~ 281 (295)
.|+-|-.+...+..+.+..+-+|.+=+.
T Consensus 293 ~~~~l~~~~~~LELeN~~l~tkL~rwE~ 320 (716)
T KOG4593|consen 293 RLEKLQSTLLGLELENEDLLTKLQRWER 320 (716)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
No 107
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.41 E-value=1.3e+02 Score=27.50 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 022524 125 ELSSFLVAMGDISLRKTAVEEKRAKVQKESKIL 157 (295)
Q Consensus 125 s~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L 157 (295)
.+.|+--++-.+..+-.-++.++.+++.++-.+
T Consensus 13 p~psL~dai~~v~~r~dSve~KIskLDaeL~k~ 45 (218)
T KOG1655|consen 13 PPPSLQDAIDSVNKRSDSVEKKISKLDAELCKY 45 (218)
T ss_pred CChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 456677777777777777777777554444444
No 108
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=61.22 E-value=1e+02 Score=26.06 Aligned_cols=81 Identities=12% Similarity=0.170 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHH
Q 022524 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQY 206 (295)
Q Consensus 127 ~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey 206 (295)
.++..|+..++..+..+-+..+..++++..-.+.+.+++....++. +..+++ +...+.++.....++...
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~---~~i~~e-------V~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEIS---KQIKDE-------VTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHH-------HHHHHhhHHHHHHHHHHH
Confidence 3455667777776666655554443333333333344443333322 222222 233444455555555555
Q ss_pred HHHHHHHHHHh
Q 022524 207 LQQYNNYKALL 217 (295)
Q Consensus 207 ~~ri~~le~~l 217 (295)
+..+..++..+
T Consensus 109 ~~~V~~Le~ki 119 (126)
T PF07889_consen 109 QQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 109
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=60.75 E-value=1.2e+02 Score=29.72 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=13.5
Q ss_pred HhhHHHHHHHHHHHHH
Q 022524 200 ASKERQYLQQYNNYKA 215 (295)
Q Consensus 200 ~aK~~Ey~~ri~~le~ 215 (295)
++|++++++.+..++.
T Consensus 193 K~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 193 KAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7889999999888775
No 110
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.44 E-value=2.3e+02 Score=29.94 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 022524 268 AIEDKKRQYAAAEKYL 283 (295)
Q Consensus 268 kiEear~EL~~Le~~l 283 (295)
+|...|++...+..++
T Consensus 448 ~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 448 EIKELREEIKEIEEEI 463 (594)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 111
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=59.58 E-value=2.4e+02 Score=29.92 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=31.5
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022524 136 ISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182 (295)
Q Consensus 136 Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~ 182 (295)
|..+.....+....|.-++..|...-...+.+...|.+.|.+|++..
T Consensus 20 lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~ 66 (617)
T PF15070_consen 20 LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM 66 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444445555555556677777776777777888888888887764
No 112
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=59.40 E-value=2e+02 Score=31.17 Aligned_cols=55 Identities=9% Similarity=0.142 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHH
Q 022524 209 QYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKA 263 (295)
Q Consensus 209 ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~ 263 (295)
++..+++.|....-...-++..|..-.+.+...-+.+..|=..|=+-+|.+||.-
T Consensus 420 ri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRV 474 (717)
T PF09730_consen 420 RISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRV 474 (717)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccH
Confidence 6666666655432222235566666667777777888888888888888888864
No 113
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=59.01 E-value=1.4e+02 Score=27.18 Aligned_cols=26 Identities=4% Similarity=0.185 Sum_probs=12.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHH
Q 022524 132 AMGDISLRKTAVEEKRAKVQKESKIL 157 (295)
Q Consensus 132 ai~~Lt~e~~~~e~~~~rl~~~i~~L 157 (295)
.+.++-..+.++...+..+..+++..
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444444444443
No 114
>PRK04863 mukB cell division protein MukB; Provisional
Probab=59.00 E-value=3.6e+02 Score=31.75 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=18.6
Q ss_pred hhhhh---cCCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Q 022524 251 TLRSY---QDLPPD-KALAALAIEDKKRQYAAAEKYLE 284 (295)
Q Consensus 251 kL~sy---~dLPpd-~~lAr~kiEear~EL~~Le~~l~ 284 (295)
-+..| ++.+++ ++......++...++..++.+..
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1486)
T PRK04863 538 LLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVS 575 (1486)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556 455555 66665555555555555554443
No 115
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=58.97 E-value=53 Score=31.44 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 022524 268 AIEDKKRQYAAAEKYLEDVLHSAL 291 (295)
Q Consensus 268 kiEear~EL~~Le~~l~~~~~~~~ 291 (295)
+|+.|++|++..-.-|-+.+++-|
T Consensus 98 E~~aAk~e~E~~~~lLke~l~sel 121 (291)
T KOG4466|consen 98 EIKAAKKEYESKKKLLKENLISEL 121 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444444433
No 116
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=58.91 E-value=3.9e+02 Score=32.12 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHHHHHHhcHhHHHhh
Q 022524 227 SHGVLVEMAEHRKELEKKTKPILDTL 252 (295)
Q Consensus 227 sh~~l~~~~e~~~eL~~~~k~L~~kL 252 (295)
.|..+..+++.+.+|+.++..|...+
T Consensus 963 ~~~k~tslE~~ls~L~~~~~~l~~e~ 988 (1822)
T KOG4674|consen 963 LHKKITSLEEELSELEKEIENLREEL 988 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444
No 117
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=58.78 E-value=2.9e+02 Score=30.66 Aligned_cols=85 Identities=12% Similarity=0.191 Sum_probs=38.9
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022524 99 ESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQL 178 (295)
Q Consensus 99 ~sLs~~G~~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L 178 (295)
+.|=..-...|.-..++..++...-. ++.+... .+..++..++.+++....-.+++....+.+++|
T Consensus 434 t~l~~~h~~lL~K~~di~kQle~~~~-------s~~~~~~-------~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l 499 (980)
T KOG0980|consen 434 TELRQEHADLLRKYDDIQKQLESAEQ-------SIDDVEE-------ENTNLNDQLEELQRAAGRAETKTESQAKALESL 499 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34445555666666677766643322 2223333 333333344444444344444444444455555
Q ss_pred hhccccchhhHHHHHHhHH
Q 022524 179 EDDVAPCEAQMENWKTNLA 197 (295)
Q Consensus 179 ~~d~~~~~~~~~~~~r~~k 197 (295)
+.++..+....+..+++++
T Consensus 500 ~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 500 RQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5444333344444444433
No 118
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=57.79 E-value=99 Score=30.55 Aligned_cols=23 Identities=17% Similarity=0.175 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022524 263 ALAALAIEDKKRQYAAAEKYLED 285 (295)
Q Consensus 263 ~lAr~kiEear~EL~~Le~~l~~ 285 (295)
.+|+.+|.+++.++..|+.+|..
T Consensus 79 ema~~Ei~~~~~~~~~le~~L~~ 101 (363)
T COG0216 79 EMAEEEIKELEAKIEELEEELKI 101 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666544
No 119
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.20 E-value=2.1e+02 Score=30.60 Aligned_cols=97 Identities=8% Similarity=0.036 Sum_probs=57.2
Q ss_pred hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhh----cCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhh----hhcCC
Q 022524 187 AQMENWKTNLAVMASKERQYLQQYNNYKALLNR----VGYTPEISHGVLVEMAEHRKELEKKTKPILDTLR----SYQDL 258 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~----~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~----sy~dL 258 (295)
.+.....+.++||..++++++.++...|..+.. .|+- ++.-+. ....+.+.++..++..++.++. .|.+=
T Consensus 260 ~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~-d~~~ea-~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~ 337 (726)
T PRK09841 260 RQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSV-DLNLEA-KAVLEQIVNVDNQLNELTFREAEISQLYKKD 337 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333444556778888888888888777766542 2331 122222 1122344445555544443332 37777
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 259 PPDKALAALAIEDKKRQYAAAEKYLED 285 (295)
Q Consensus 259 Ppd~~lAr~kiEear~EL~~Le~~l~~ 285 (295)
-|.+...+.++...++++..++.++..
T Consensus 338 hP~v~~l~~~~~~L~~~~~~l~~~~~~ 364 (726)
T PRK09841 338 HPTYRALLEKRQTLEQERKRLNKRVSA 364 (726)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888888888888888777766643
No 120
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=56.96 E-value=1.7e+02 Score=27.36 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=8.7
Q ss_pred HHhhHHHHHHHHHHHHHHh
Q 022524 199 MASKERQYLQQYNNYKALL 217 (295)
Q Consensus 199 L~aK~~Ey~~ri~~le~~l 217 (295)
+..-+.+.+.|++..+..+
T Consensus 64 ~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 64 LESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 121
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=56.40 E-value=3.4e+02 Score=30.67 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=43.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc------chhhHHHHHHhHHHHHhh
Q 022524 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAP------CEAQMENWKTNLAVMASK 202 (295)
Q Consensus 129 l~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~------~~~~~~~~~r~~k~L~aK 202 (295)
+...=..|.+....++.... ++..|++++.+..+....+.+.++.+.+-... ....++...+.-.+|-+|
T Consensus 849 l~~~~~el~~~~~~~e~~~~----el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~~rk~~Ll~K 924 (1200)
T KOG0964|consen 849 LELEKSELESEEKRVEAAIL----ELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDNINFDKELEKLVRRKHMLLKK 924 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 33333344444444444444 66788888887777777766555444321110 112233334455567778
Q ss_pred HHHHHHHHH
Q 022524 203 ERQYLQQYN 211 (295)
Q Consensus 203 ~~Ey~~ri~ 211 (295)
-.|+..+|.
T Consensus 925 reE~~ekIr 933 (1200)
T KOG0964|consen 925 REECCEKIR 933 (1200)
T ss_pred HHHHHHHHH
Confidence 888888873
No 122
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=56.38 E-value=2.1e+02 Score=28.15 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022524 105 VVSSAQVLANVANLLNIRDT-ELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVA 183 (295)
Q Consensus 105 G~~aL~aLa~~A~~Lg~~dt-s~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~ 183 (295)
+..-+.+|-.+...+.+-++ .+..+-..|-.|..+...+.+..... ..... .. .++..|-+.|..++. +.
T Consensus 241 ~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~----~~~~~-~e---~KI~eLy~~l~~~~~-~~ 311 (388)
T PF04912_consen 241 SSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEA----KEDAE-QE---SKIDELYEILPRWDP-YA 311 (388)
T ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccc-ch---hHHHHHHHHHHHHHH-Hh
Confidence 44556666666666666544 55666666666666665555443311 00000 01 122222222222221 11
Q ss_pred cchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 022524 184 PCEAQMENWKTNLAVMASKERQYLQQYNNYKAL 216 (295)
Q Consensus 184 ~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~ 216 (295)
..-|..-++++.++.|.....++..++..++..
T Consensus 312 ~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~ 344 (388)
T PF04912_consen 312 PSLPSLVERLKTLKSLHEEAAEFSQTLSELESQ 344 (388)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112666778888888888888888888777754
No 123
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=56.35 E-value=1.6e+02 Score=26.95 Aligned_cols=91 Identities=13% Similarity=0.164 Sum_probs=42.3
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-------cchhhHHHHHHhHHH-HHh--
Q 022524 132 AMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVA-------PCEAQMENWKTNLAV-MAS-- 201 (295)
Q Consensus 132 ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~-------~~~~~~~~~~r~~k~-L~a-- 201 (295)
.+.++..+..++....+.++++++.|..|.++.-.-+..+++.+.+|+..+. .+.+.+..+...++- +..
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~ 122 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDL 122 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444444444444444445555555554433333333333334444443332 122444444333332 221
Q ss_pred --hHHHHHHHHHHHHHHhhhcCC
Q 022524 202 --KERQYLQQYNNYKALLNRVGY 222 (295)
Q Consensus 202 --K~~Ey~~ri~~le~~l~~~g~ 222 (295)
...|-..|+..+...+.+.++
T Consensus 123 Pf~~~eR~~Rl~~L~~~l~~~dv 145 (251)
T PF11932_consen 123 PFLLEERQERLARLRAMLDDADV 145 (251)
T ss_pred CCChHHHHHHHHHHHHhhhccCC
Confidence 345666777777776666555
No 124
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=56.17 E-value=61 Score=26.19 Aligned_cols=55 Identities=9% Similarity=0.106 Sum_probs=40.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhh
Q 022524 196 LAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY 255 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy 255 (295)
+..+..+......|+..+|..+. ++ ++|+.+-.+.-.+.++..+++.+..+|++.
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~--~L---Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLE--HL---PTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hC---CCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44566677777888888887654 33 478888888888888888888888777654
No 125
>PRK01156 chromosome segregation protein; Provisional
Probab=55.30 E-value=3.1e+02 Score=29.82 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=10.7
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHH
Q 022524 133 MGDISLRKTAVEEKRAKVQKESK 155 (295)
Q Consensus 133 i~~Lt~e~~~~e~~~~rl~~~i~ 155 (295)
+...+.++-.++.....++.++.
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~ 493 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVK 493 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444433333
No 126
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=55.25 E-value=1.5e+02 Score=31.05 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhh
Q 022524 280 EKYLEDVLHSAL 291 (295)
Q Consensus 280 e~~l~~~~~~~~ 291 (295)
..+|...+|.|+
T Consensus 240 r~~F~~eL~~Ai 251 (546)
T KOG0977|consen 240 REYFKNELALAI 251 (546)
T ss_pred hHHHHHHHHHHH
Confidence 345555555554
No 127
>PF14282 FlxA: FlxA-like protein
Probab=54.98 E-value=63 Score=26.11 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=37.3
Q ss_pred HHHHHHHHhcHhHHHhhhhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQD-LPPDKALAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~d-LPpd~~lAr~kiEear~EL~~Le~~l~~~ 286 (295)
..+..|..+++.|..+|....+ =+.++...+.+++....++..|+.++...
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666667777766666665 44466777888999999999999988755
No 128
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=54.93 E-value=4 Score=34.45 Aligned_cols=86 Identities=16% Similarity=0.231 Sum_probs=0.0
Q ss_pred hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHH
Q 022524 187 AQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAA 266 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr 266 (295)
..+..|..++.-+...+.+....+..+...+...|. .+-.+.+..-.|..++++++.+...|..|--+++.-|
T Consensus 24 ~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~-------~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~Ir 96 (138)
T PF06009_consen 24 ENLENWSENLGEINSDVEETNQDISDANKALDDANN-------SVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIR 96 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 555677777777777777777767666655554443 4445555666778888899999888888999999999
Q ss_pred HHHHHHHHHHHHH
Q 022524 267 LAIEDKKRQYAAA 279 (295)
Q Consensus 267 ~kiEear~EL~~L 279 (295)
..|+.||..=.++
T Consensus 97 elI~qAR~~An~I 109 (138)
T PF06009_consen 97 ELIAQARDAANRI 109 (138)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhhe
Confidence 9999998765443
No 129
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=54.76 E-value=2.6e+02 Score=28.80 Aligned_cols=27 Identities=30% Similarity=0.230 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 262 KALAALAIEDKKRQYAAAEKYLEDVLH 288 (295)
Q Consensus 262 ~~lAr~kiEear~EL~~Le~~l~~~~~ 288 (295)
+..++.+++.+|..+..++.+|.....
T Consensus 395 ~~~~k~E~e~~ka~i~t~E~rL~aa~k 421 (522)
T PF05701_consen 395 VEKAKEEAEQTKAAIKTAEERLEAALK 421 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544433
No 130
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=54.37 E-value=2.5e+02 Score=28.56 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=27.7
Q ss_pred HHHHHHHHH-------hhcccCCCCCCCCccChHHHHHHHHHHHhh
Q 022524 21 IADVKAWLA-------SQFEASAKEVPAFEYTSRSVAHLYNLATLS 59 (295)
Q Consensus 21 ~s~V~sWL~-------~~f~~~~~pvP~fErN~~Tl~~L~~La~~n 59 (295)
..|++.|.+ +.|+ .+..-|.|+.++.+.++|--+..+-
T Consensus 69 ~~yl~~W~~~~~GwL~r~~~-~~~~e~~y~lT~~a~~Al~~l~~L~ 113 (478)
T PF11855_consen 69 RAYLRDWVRADKGWLRRRYD-EGSDEEHYELTPAAEKALRFLERLE 113 (478)
T ss_pred HHHHHHHHHHhhhHHHhccC-CCCCCeeEEeCHHHHHHHHHHHHcC
Confidence 346666666 4454 3445699999999999998887763
No 131
>PF13514 AAA_27: AAA domain
Probab=53.90 E-value=3.7e+02 Score=30.28 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=31.2
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l 283 (295)
+.+.++..++..++.+|....+ -.+...+..+++.++.++..+..+.
T Consensus 910 ~~~~~l~~~~~~~~~~l~~l~~-~~~~a~l~~e~e~~~a~l~~~~~~~ 956 (1111)
T PF13514_consen 910 EELEELQEERAELEQELEALEG-DDDAAELEQEREEAEAELEELAEEW 956 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777665 3456667777777777777765543
No 132
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=53.79 E-value=1.7e+02 Score=26.40 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=77.9
Q ss_pred HcCCCCCchh----------HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhc
Q 022524 118 LLNIRDTELS----------SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKA------IARLTYLKRTLGQLEDD 181 (295)
Q Consensus 118 ~Lg~~dts~~----------sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~------l~~~~~L~~~L~~L~~d 181 (295)
++|-+-++|. +...||.+|-..+..++.....++.+|+.+....++. -.++..|+ .-+-++..
T Consensus 4 ~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~Lk-rKK~~E~q 82 (191)
T PTZ00446 4 WFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLK-RKKLYEQE 82 (191)
T ss_pred ccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHH
Confidence 4666666664 5778999998888888877777777776554332211 12222322 11111111
Q ss_pred cccchhhHHHHHHhHHHHHhhHHH----------HHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHh
Q 022524 182 VAPCEAQMENWKTNLAVMASKERQ----------YLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDT 251 (295)
Q Consensus 182 ~~~~~~~~~~~~r~~k~L~aK~~E----------y~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~k 251 (295)
+ .++..++-|+..+-..++- ++....+++... .+ ++...|..+..++.+......++..-
T Consensus 83 l----~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~--k~----~~idkVd~lmDei~E~~e~~~EIsea 152 (191)
T PTZ00446 83 I----ENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLN--NE----INTQKVEKIIDTIQENKDIQEEINQA 152 (191)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2333333333332222222 222223333221 22 46678888888888888888888888
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524 252 LRSYQDLPPDKALAALAIEDKKRQYAAAEK 281 (295)
Q Consensus 252 L~sy~dLPpd~~lAr~kiEear~EL~~Le~ 281 (295)
|.. ++|.+++ =++.-.||..|+.
T Consensus 153 Ls~--~~~~~~D-----EdELe~ELe~Le~ 175 (191)
T PTZ00446 153 LSF--NLLNNVD-----DDEIDKELDLLKE 175 (191)
T ss_pred HcC--CCCCCCC-----HHHHHHHHHHHHH
Confidence 862 3443333 2366667766664
No 133
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=53.31 E-value=1.4e+02 Score=25.38 Aligned_cols=12 Identities=0% Similarity=0.080 Sum_probs=4.6
Q ss_pred HHhhHHHHHHHH
Q 022524 199 MASKERQYLQQY 210 (295)
Q Consensus 199 L~aK~~Ey~~ri 210 (295)
|..|+.-+...+
T Consensus 78 l~rriq~LEeel 89 (143)
T PF12718_consen 78 LNRRIQLLEEEL 89 (143)
T ss_pred HHhhHHHHHHHH
Confidence 333333333333
No 134
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=53.11 E-value=4e+02 Score=30.42 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHH----HhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHH---Hhhhhhc-----------CCCCCHHH
Q 022524 203 ERQYLQQYNNYKA----LLNRVGYTPEISHGVLVEMAEHRKELEKKTKPIL---DTLRSYQ-----------DLPPDKAL 264 (295)
Q Consensus 203 ~~Ey~~ri~~le~----~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~---~kL~sy~-----------dLPpd~~l 264 (295)
-.++..+++.++. .|++.|+|+ ..|..+.+.+..|.++++.++ ..|..|. +++.....
T Consensus 745 ~~~~~~~~~~le~~~~~eL~~~GvD~----~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~ 820 (1201)
T PF12128_consen 745 KQEAKEQLKELEQQYNQELAGKGVDP----ERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPE 820 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 3344444444443 477899974 456666666665555555443 3344443 34446666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022524 265 AALAIEDKKRQYAAAEKYLEDVL 287 (295)
Q Consensus 265 Ar~kiEear~EL~~Le~~l~~~~ 287 (295)
.+.++...+.++..++.++..+.
T Consensus 821 l~~~~~~~~~~~~~l~~~~~~~~ 843 (1201)
T PF12128_consen 821 LEEQLRDLEQELQELEQELNQLQ 843 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777765544
No 135
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=52.87 E-value=2.8e+02 Score=28.58 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=21.0
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 254 SYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLH 288 (295)
Q Consensus 254 sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~ 288 (295)
...+||..+..+..+.+.+|++......+.....+
T Consensus 366 ~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~ 400 (522)
T PF05701_consen 366 AMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKE 400 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666655554433
No 136
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=52.83 E-value=7.6 Score=41.28 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHhcHhHHHhhh
Q 022524 242 EKKTKPILDTLR 253 (295)
Q Consensus 242 ~~~~k~L~~kL~ 253 (295)
.+++..|+.+++
T Consensus 345 ~e~~~~LEeel~ 356 (713)
T PF05622_consen 345 LETKAMLEEELK 356 (713)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 137
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=51.61 E-value=3.2e+02 Score=28.90 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=21.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTY 170 (295)
Q Consensus 129 l~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~ 170 (295)
-...+.+|..++.++......++.+++.+...+..-...+..
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~ 367 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEE 367 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555444333333333
No 138
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=51.22 E-value=1.1e+02 Score=27.04 Aligned_cols=8 Identities=0% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHhHhHHH
Q 022524 135 DISLRKTA 142 (295)
Q Consensus 135 ~Lt~e~~~ 142 (295)
.+..++.+
T Consensus 78 ~l~~ELae 85 (194)
T PF08614_consen 78 KLQEELAE 85 (194)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33333333
No 139
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=51.20 E-value=99 Score=22.94 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 227 SHGVLVEMAEHRKELEKKTKPILDTLRSYQDLP-PDKALAALAIEDKKRQYAAAEKYLED 285 (295)
Q Consensus 227 sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLP-pd~~lAr~kiEear~EL~~Le~~l~~ 285 (295)
-+..|......+.+..+-+..++-.++.. | ........+|...|.+|..+..+|.+
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~E~~~~---p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMELEVRSL---PPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTS----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56777777788888888888888888755 6 45566788899999999999988763
No 140
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=50.60 E-value=64 Score=28.59 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 235 AEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVL 287 (295)
Q Consensus 235 ~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~ 287 (295)
.+.+.+|.+....+..+|-+||=| .-|.+||+....|..||..+.+.-
T Consensus 98 ~~ri~eLe~~l~~kad~vvsYqll-----~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 98 TRRLDELERQLQQKADDVVSYQLL-----QHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHH-----HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666667777777644 678888888888888888877643
No 141
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=50.51 E-value=4.3e+02 Score=30.14 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=57.3
Q ss_pred hhHHHHHHhHHHHHhhH--------------HHHHHHHHHHHHHhhhcCC-CCCCcHHHHHHHHHHHHHHHHhcHhHHHh
Q 022524 187 AQMENWKTNLAVMASKE--------------RQYLQQYNNYKALLNRVGY-TPEISHGVLVEMAEHRKELEKKTKPILDT 251 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~--------------~Ey~~ri~~le~~l~~~g~-~~s~sh~~l~~~~e~~~eL~~~~k~L~~k 251 (295)
.+..++++......++. -+-+.|+...+..|++... ...++......+.-+...++.++..++..
T Consensus 116 ~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~ 195 (1109)
T PRK10929 116 SQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELA 195 (1109)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555 3344444444444443211 12245455556656667777777777777
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 252 LRSYQDLPPDKALAALAIEDKKRQYAAAEKYLE 284 (295)
Q Consensus 252 L~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~ 284 (295)
+. +.+.-.++++...+.++.++..++.++.
T Consensus 196 l~---s~~~~~~L~~~q~dl~~~~~~~l~~~~~ 225 (1109)
T PRK10929 196 QL---SANNRQELARLRSELAKKRSQQLDAYLQ 225 (1109)
T ss_pred Hh---ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 6777788888888888888887777653
No 142
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.19 E-value=3e+02 Score=28.24 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=13.4
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 022524 145 EKRAKVQK-ESKILLDYTRKAIARLTYLK 172 (295)
Q Consensus 145 ~~~~rl~~-~i~~L~~~l~k~l~~~~~L~ 172 (295)
+...++++ +++....|....++....|+
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~ 367 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLK 367 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 44444433 55555555555555444433
No 143
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=49.88 E-value=2.4e+02 Score=26.88 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=35.4
Q ss_pred hhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022524 217 LNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 217 l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l 283 (295)
|...|+ ++.+.+.+....+...+..+...+.++.....--.+...++..++.++.+|......+
T Consensus 143 L~~~g~---vS~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l 206 (346)
T PRK10476 143 LLAKGY---VSAQQVDQARTAQRDAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAELHL 206 (346)
T ss_pred HHHCCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 555566 5666666655555555555555555544433322344556666666666666655544
No 144
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.37 E-value=2e+02 Score=25.83 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 230 VLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVL 287 (295)
Q Consensus 230 ~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~ 287 (295)
.|.+++..+.+|+++..-++.+-+... ..+...++.++....++...+.+|...+
T Consensus 132 ~i~~Le~ki~el~~~~~~~~~~ke~~~---~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 132 EIKELEMKILELQRQAAKLKEKKEAKD---KEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444443333333 5566666677777777777777776543
No 145
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=48.76 E-value=64 Score=29.59 Aligned_cols=56 Identities=7% Similarity=0.150 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCccChHHHHHHHHHHHhhHhhhHHHhHHHHHHHHHH
Q 022524 18 AARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKA 77 (295)
Q Consensus 18 ~~~~s~V~sWL~~~f~~~~~pvP~fErN~~Tl~~L~~La~~neaaD~e~~Ll~~d~~~~~ 77 (295)
..+...|-.||...|+ .|.|.++++ +..+.|.+..=.-++.|+-++.+...+-++.
T Consensus 3 ~~~~~~i~~~l~~~~p---~~~~~l~~~-~pf~lLva~iLSaqttD~~vn~at~~Lf~~~ 58 (211)
T COG0177 3 KKKALEILDRLRELYP---EPKTELDFK-DPFELLVAVILSAQTTDEVVNKATPALFKRY 58 (211)
T ss_pred HhhHHHHHHHHHHHCC---CCCCccCcC-CcHHHHHHHHHhccCchHHHHHHHHHHHHHc
Confidence 4567789999999995 666666633 6688899998889999999999887666653
No 146
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=48.54 E-value=29 Score=35.26 Aligned_cols=44 Identities=27% Similarity=0.435 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHhhcc--------cC--------------CCCCCCCccChHHHHHHHHHHHhhHh
Q 022524 16 RDAARIADVKAWLASQFE--------AS--------------AKEVPAFEYTSRSVAHLYNLATLSQA 61 (295)
Q Consensus 16 ~~~~~~s~V~sWL~~~f~--------~~--------------~~pvP~fErN~~Tl~~L~~La~~nea 61 (295)
.|-+|.+-.-+||-+.-- ++ +.|||.|+.+|+ +++-.||+.||.
T Consensus 162 gd~ek~aAyvAW~lkatkgygiKiVNPgG~eaWgwG~NV~sLddpvp~FdiTP~--EIi~glaevnE~ 227 (575)
T COG1229 162 GDMEKAAAYVAWLLKATKGYGIKIVNPGGVEAWGWGKNVHSLDDPVPYFDITPR--EIIKGLAEVNER 227 (575)
T ss_pred CCHHHHHHHHHHHHHhcccceEEEECCCCcccccccCCcccccCCCCCcccCHH--HHHHHHHHHHHh
Confidence 455777777889876421 01 289999999998 578899999874
No 147
>PRK04863 mukB cell division protein MukB; Provisional
Probab=48.51 E-value=5.2e+02 Score=30.48 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=28.8
Q ss_pred hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHH
Q 022524 187 AQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMA 235 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~ 235 (295)
.+.......+..+.++...|+..+..++..=.=-|. ++++.+.+..+-
T Consensus 397 eqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~-~~~SdEeLe~~L 444 (1486)
T PRK04863 397 SQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGL-PDLTADNAEDWL 444 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHH
Confidence 444455666777788888888887766653222343 456666655443
No 148
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.91 E-value=2.6e+02 Score=26.84 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=47.9
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHhhh----cCC-CCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhh----hcCCCCCHHH
Q 022524 194 TNLAVMASKERQYLQQYNNYKALLNR----VGY-TPEISHGVLVEMAEHRKELEKKTKPILDTLRS----YQDLPPDKAL 264 (295)
Q Consensus 194 r~~k~L~aK~~Ey~~ri~~le~~l~~----~g~-~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~s----y~dLPpd~~l 264 (295)
...+|+...+++++.++...+..+.. .|+ +++. ......+.+.+|+.++..++.++.. |.+=-|.+-.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~---~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~ 246 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKA---QSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPS 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHH
Confidence 34566666666666666666655532 233 2221 1222234555666666666666543 3333577776
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022524 265 AALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 265 Ar~kiEear~EL~~Le~~l 283 (295)
++.+|...++++.....++
T Consensus 247 l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777777766654443
No 149
>PRK01156 chromosome segregation protein; Provisional
Probab=47.51 E-value=4e+02 Score=28.91 Aligned_cols=7 Identities=14% Similarity=0.539 Sum_probs=3.9
Q ss_pred HHHHHHH
Q 022524 23 DVKAWLA 29 (295)
Q Consensus 23 ~V~sWL~ 29 (295)
.|+.|+.
T Consensus 112 ~~~~~i~ 118 (895)
T PRK01156 112 DTTKYIE 118 (895)
T ss_pred HHHHHHH
Confidence 4556665
No 150
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=47.50 E-value=5.8e+02 Score=30.75 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 230 VLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 230 ~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~ 286 (295)
.|..+.+++......+..+...+.-++ ..++..+.+...+-+.++.+++++
T Consensus 1315 ei~~Lk~el~~ke~~~~el~~~~~~~q------~~~k~qld~l~~e~~~lt~~~~ql 1365 (1822)
T KOG4674|consen 1315 EISRLKEELEEKENLIAELKKELNRLQ------EKIKKQLDELNNEKANLTKELEQL 1365 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666677777777777777777 667777777777777776666544
No 151
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=47.27 E-value=3.7e+02 Score=28.85 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCC
Q 022524 228 HGVLVEMAEHRKELEKKTKPILDTLRSYQDLPP 260 (295)
Q Consensus 228 h~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPp 260 (295)
++.. .+.+....|..++..|++.++-|=-.-|
T Consensus 293 ~~~~-~e~~~r~kL~N~i~eLkGnIRV~CRvRP 324 (670)
T KOG0239|consen 293 VEKK-KEKEERRKLHNEILELKGNIRVFCRVRP 324 (670)
T ss_pred HHHH-HHHHHHHHHHHHHHHhhcCceEEEEecC
Confidence 3444 4447777888888888888887754433
No 152
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=47.02 E-value=56 Score=26.08 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=31.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCC
Q 022524 220 VGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLP 259 (295)
Q Consensus 220 ~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLP 259 (295)
.|++.. -...+..+-+++..|++++..|+.+|+.|..+|
T Consensus 63 l~in~~-gialvl~LLd~i~~Lr~el~~L~~~l~~~~~~~ 101 (101)
T PRK10265 63 LALDWP-GIAVALTLLDEIAHLKQENRLLRQRLSRFVAHP 101 (101)
T ss_pred cCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455332 446778888999999999999999999999887
No 153
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=47.01 E-value=37 Score=24.91 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=32.3
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhh
Q 022524 198 VMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRS 254 (295)
Q Consensus 198 ~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~s 254 (295)
-|..++..++..|..++..|+.-||......+.+....+.+.++..++..|...|..
T Consensus 8 rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 8 RLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556666666666666666644444445555556666666666666655543
No 154
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=46.94 E-value=4.2e+02 Score=28.97 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhcHhHHHhhhhhcCC
Q 022524 230 VLVEMAEHRKELEKKTKPILDTLRSYQDL 258 (295)
Q Consensus 230 ~l~~~~e~~~eL~~~~k~L~~kL~sy~dL 258 (295)
.|..=++++.+-.+.+..|-+||++...+
T Consensus 734 EiaaAA~KLAECQeTI~sLGkQLksLa~~ 762 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIASLGKQLKSLATP 762 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 55555678888888888888888887743
No 155
>PRK00736 hypothetical protein; Provisional
Probab=46.82 E-value=67 Score=24.02 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=16.2
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHH
Q 022524 191 NWKTNLAVMASKERQYLQQYNNYKAL 216 (295)
Q Consensus 191 ~~~r~~k~L~aK~~Ey~~ri~~le~~ 216 (295)
..++.+..|..++.-+.+|+...+.+
T Consensus 30 ~Qq~~i~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00736 30 EQWKTVEQMRKKLDALTERFLSLEEQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455666777777777777665543
No 156
>PF14992 TMCO5: TMCO5 family
Probab=46.63 E-value=2.5e+02 Score=26.96 Aligned_cols=47 Identities=21% Similarity=0.123 Sum_probs=26.3
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLED 285 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~ 285 (295)
+.+..++.++..+......-+.|= .-+...|...++-|++++.+.+.
T Consensus 123 ~~~~~qE~ei~kve~d~~~v~~l~---eDq~~~i~klkE~L~rmE~ekE~ 169 (280)
T PF14992_consen 123 ESCASQEKEIAKVEDDYQQVHQLC---EDQANEIKKLKEKLRRMEEEKEM 169 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544333333332 23566777888888888876543
No 157
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=46.40 E-value=3.2e+02 Score=27.37 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=57.5
Q ss_pred HHHHhccccccCCChhHHHHHHHHHHHHHHcCCCCC--chhHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 022524 89 EILENVGLAQESLPSNVVSSAQVLANVANLLNIRDT--ELSSFLVAMGDISLRKT--AVEEKRAKVQKESKILLDYTRKA 164 (295)
Q Consensus 89 ~lLe~lgls~~sLs~~G~~aL~aLa~~A~~Lg~~dt--s~~sl~~ai~~Lt~e~~--~~e~~~~rl~~~i~~L~~~l~k~ 164 (295)
++|..+| .+=++|--|..++|.|.+....+...++ +++||..- ..--...| ..+....++++|.+-+..++.+-
T Consensus 142 ~~L~~L~-~elnfsN~aa~~~N~ll~~i~~F~~a~vYynl~sYl~Q-~~~g~~~F~g~~~~a~~~l~~E~~~~~~di~~~ 219 (379)
T PF04518_consen 142 DFLNPLG-SELNFSNLAANYGNPLLEIINSFNNASVYYNLSSYLGQ-SKMGTDNFPGSYFMALAKLEKEREQIRRDIKSC 219 (379)
T ss_pred HHHHHHH-HHhhcchHHHHHHHHHHHHHHcCcCcceeeehHHHHhh-hccchhccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566554 2457788899999999999999988876 77776655 11112222 23344456666666666665555
Q ss_pred HHHHHHHHHHHhhhhhcc
Q 022524 165 IARLTYLKRTLGQLEDDV 182 (295)
Q Consensus 165 l~~~~~L~~~L~~L~~d~ 182 (295)
-.+...+.+.++..+.|.
T Consensus 220 ~~A~~~l~~~~~~V~~d~ 237 (379)
T PF04518_consen 220 ERAKAVLNKQLARVKADA 237 (379)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 555555555666665553
No 158
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.35 E-value=2.7e+02 Score=28.33 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=18.2
Q ss_pred hHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 022524 188 QMENWKTNLAVMASKERQYLQQYNNYK 214 (295)
Q Consensus 188 ~~~~~~r~~k~L~aK~~Ey~~ri~~le 214 (295)
.+..|..-..|+..+..+++.++..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777766654444
No 159
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=46.17 E-value=3.6e+02 Score=27.88 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=37.1
Q ss_pred HHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022524 240 ELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSA 290 (295)
Q Consensus 240 eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~~~ 290 (295)
++......++.+|..+.+...++...+.+++.++.+|..+-.++....+.+
T Consensus 326 ~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 326 EVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777888888888888888888877777665444
No 160
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=46.11 E-value=2.2e+02 Score=25.54 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=27.2
Q ss_pred ChhHHHHHHHHHHHHHH-cCCCCCchhHHHHHHHHHhHhHHHHHH
Q 022524 102 PSNVVSSAQVLANVANL-LNIRDTELSSFLVAMGDISLRKTAVEE 145 (295)
Q Consensus 102 s~~G~~aL~aLa~~A~~-Lg~~dts~~sl~~ai~~Lt~e~~~~e~ 145 (295)
+..|..++++|..++-. .+++. ..++|.++..++..-..++.
T Consensus 30 ~~a~~~f~dal~ki~~~A~~s~~--s~~lG~~L~~~s~~~r~i~~ 72 (219)
T PF08397_consen 30 SQAAAAFFDALQKIGDMASNSRG--SKELGDALMQISEVHRRIEN 72 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCc--cccHHHHHHHHHHHHHHHHH
Confidence 56777888888887744 23332 66778777777655555543
No 161
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=45.95 E-value=5e+02 Score=29.51 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=23.3
Q ss_pred CcHHHHHHHHHHHHHHHHhcHhHHHhh
Q 022524 226 ISHGVLVEMAEHRKELEKKTKPILDTL 252 (295)
Q Consensus 226 ~sh~~l~~~~e~~~eL~~~~k~L~~kL 252 (295)
..|..+..+-.++.+++.+.+.|+.++
T Consensus 575 ~~~~elkk~idaL~alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 575 LIHNELKKYIDALNALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888889999999999999887
No 162
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.75 E-value=4.9e+02 Score=29.35 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHH
Q 022524 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQY 206 (295)
Q Consensus 127 ~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey 206 (295)
+-++....+|..++.+...... +.....+....+++.+..== .|..|..+. .+..++..+..+.+++.++.|+
T Consensus 272 Skim~qqa~Lqrel~raR~e~k----eaqe~ke~~k~emad~ad~i-EmaTldKEm--AEERaesLQ~eve~lkEr~del 344 (1243)
T KOG0971|consen 272 SKIMEQQADLQRELKRARKEAK----EAQEAKERYKEEMADTADAI-EMATLDKEM--AEERAESLQQEVEALKERVDEL 344 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777765543333 22333333333333332211 112222222 3366667788888888888888
Q ss_pred HHHHHHHHHHhhhcCCCC-CCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCC----CHHHHHHHHHHHHHHHHHHH
Q 022524 207 LQQYNNYKALLNRVGYTP-EISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPP----DKALAALAIEDKKRQYAAAE 280 (295)
Q Consensus 207 ~~ri~~le~~l~~~g~~~-s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPp----d~~lAr~kiEear~EL~~Le 280 (295)
.-.+.-+++-....|-+. -.+--...++ ..+-.-|+..|=...||.. |...+.-++|..+.|+..|.
T Consensus 345 etdlEILKaEmeekG~~~~~~ss~qfkql-------EqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~ 416 (1243)
T KOG0971|consen 345 ETDLEILKAEMEEKGSDGQAASSYQFKQL-------EQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELR 416 (1243)
T ss_pred HHHHHHHHHHHHhcCCCCcccchHHHHHH-------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 777766665544445432 2333334444 3444444444444555543 33344444555555444444
No 163
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=45.71 E-value=2.9e+02 Score=26.70 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=9.3
Q ss_pred hHHHHHhhHHHHHHHHHHHH
Q 022524 195 NLAVMASKERQYLQQYNNYK 214 (295)
Q Consensus 195 ~~k~L~aK~~Ey~~ri~~le 214 (295)
.++-++.+..+|+.+|..+.
T Consensus 166 ei~~lk~~~~e~~eki~~la 185 (294)
T COG1340 166 EIDELKKKAREIHEKIQELA 185 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 164
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=45.62 E-value=21 Score=38.06 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHHhHhHHHHHHHHHHH
Q 022524 122 RDTELSSFLVAMGDISLRKTAVEEKRAKV 150 (295)
Q Consensus 122 ~dts~~sl~~ai~~Lt~e~~~~e~~~~rl 150 (295)
...+|.++..+|+.+..+...+-++...+
T Consensus 334 ~~~sPe~l~~~l~~lq~~~~~L~ek~g~~ 362 (722)
T PF05557_consen 334 EFDSPEDLARALVQLQQENASLTEKLGSL 362 (722)
T ss_dssp -----------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34467888888888776666555555544
No 165
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=44.84 E-value=61 Score=29.88 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHH
Q 022524 107 SSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVE 144 (295)
Q Consensus 107 ~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e 144 (295)
.+++.|.... .+--...+..+....++|+..++...+
T Consensus 109 ~~l~~l~~~g-~v~~~~~~~~DvT~~y~D~~arl~~l~ 145 (262)
T PF14257_consen 109 SFLDELSELG-KVTSRNISSEDVTEQYVDLEARLKNLE 145 (262)
T ss_pred HHHHHHhccC-ceeeeeccccchHHHHHHHHHHHHHHH
Confidence 3444444333 111223444444444444444444433
No 166
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.16 E-value=4.9e+02 Score=28.88 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=10.6
Q ss_pred HHHHhcHhHHHhhhhhc--CCCCC
Q 022524 240 ELEKKTKPILDTLRSYQ--DLPPD 261 (295)
Q Consensus 240 eL~~~~k~L~~kL~sy~--dLPpd 261 (295)
.|--+...|..+|+.-+ ..+-+
T Consensus 504 ~l~~Ekq~l~~qlkq~q~a~~~~~ 527 (1118)
T KOG1029|consen 504 KLAPEKQELNHQLKQKQSAHKETT 527 (1118)
T ss_pred hhhhHHHHHHHHHHHhhhhccCcc
Confidence 33344455566665443 44444
No 167
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=44.00 E-value=39 Score=33.02 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=14.2
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHH
Q 022524 191 NWKTNLAVMASKERQYLQQYNNYKA 215 (295)
Q Consensus 191 ~~~r~~k~L~aK~~Ey~~ri~~le~ 215 (295)
+.+..+-.+.-.+-.++.|++++|.
T Consensus 130 NLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 130 NLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhcchHhhHHHHHHHHhc
Confidence 3344444456666666666666664
No 168
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=43.97 E-value=4.1e+02 Score=27.93 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 257 DLPPDKALAALAIEDKKRQYAAAEKYLE 284 (295)
Q Consensus 257 dLPpd~~lAr~kiEear~EL~~Le~~l~ 284 (295)
+|-.|-..||-.++..++.+..+..++.
T Consensus 407 ~LrkdEl~Are~l~~~~~~l~eikR~me 434 (570)
T COG4477 407 SLRKDELEARENLERLKSKLHEIKRYME 434 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666655543
No 169
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.79 E-value=1.6e+02 Score=25.49 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022524 230 VLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 230 ~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l 283 (295)
.+-...+++..++.++...+++|+.|.+---|.+.-+.+|+.++.++......+
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~ 74 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEY 74 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445788999999999999999999999999999999999999998444444
No 170
>PF09057 Smac_DIABLO: Second Mitochondria-derived Activator of Caspases; InterPro: IPR015142 This entry represents Smac (Second Mitochondria-derived Activator of Caspases) and DIABLO (Direct IAP-Binding protein with Low PI) proteins and their homologues. Smac promotes apoptosis by activating caspases in the cytochrome c/Apaf-1/caspase-9 pathway, and by opposing the inhibitory activity of inhibitor of apoptosis proteins (XIAP-BIR3). The protein assumes an elongated three-helix bundle structure, and forms a dimer in solution []. ; GO: 0006917 induction of apoptosis, 0006919 activation of caspase activity, 0005739 mitochondrion; PDB: 1XB0_I 1G73_B 3UIH_P 1XB1_H 3UIJ_Q 3D9U_B 1FEW_A 1TW6_D 1G3F_B.
Probab=43.77 E-value=1.1e+02 Score=28.34 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhcHhHHHhhh-hhcCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 230 VLVEMAEHRKELEKKTKPILDTLR-SYQDLPPD--------KALAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 230 ~l~~~~e~~~eL~~~~k~L~~kL~-sy~dLPpd--------~~lAr~kiEear~EL~~Le~~l~~~ 286 (295)
.|++...+|......+..|-++-. .+..|-|+ +-++|+++.+.+.|+.++|+.....
T Consensus 87 ALIda~teY~kav~tLisL~k~Y~~~lgKl~~~EeD~vWqvIIg~R~E~~dk~~e~~rlEs~w~sA 152 (234)
T PF09057_consen 87 ALIDAITEYTKAVHTLISLQKRYLSSLGKLNSAEEDAVWQVIIGQRVEMNDKQQECLRLESTWMSA 152 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444667777777777766544 56677777 6689999999999999999876443
No 171
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=43.53 E-value=4.7e+02 Score=28.56 Aligned_cols=21 Identities=0% Similarity=0.172 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 022524 274 RQYAAAEKYLEDVLHSALATN 294 (295)
Q Consensus 274 ~EL~~Le~~l~~~~~~~~~~~ 294 (295)
...+.|+.+..++|-.|+.++
T Consensus 649 ~KIe~L~~eIkkkIe~av~ss 669 (762)
T PLN03229 649 EKIESLNEEINKKIERVIRSS 669 (762)
T ss_pred HHHHHHHHHHHHHHHHHhcch
Confidence 345566666666666666554
No 172
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=42.78 E-value=2.4e+02 Score=26.55 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHhHhHHHHHHHHHHH
Q 022524 126 LSSFLVAMGDISLRKTAVEEKRAKV 150 (295)
Q Consensus 126 ~~sl~~ai~~Lt~e~~~~e~~~~rl 150 (295)
+-..+.-|..|-.+...++....|+
T Consensus 108 LI~ngekI~~Ly~e~~~vk~~qkrL 132 (254)
T KOG2196|consen 108 LIENGEKISGLYNEVVKVKLDQKRL 132 (254)
T ss_pred HHhCcHHHHHHHHHHHHHHhHHHHH
Confidence 3344445555555555555444433
No 173
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=42.78 E-value=2.4e+02 Score=25.04 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=10.8
Q ss_pred hHHHHHHHHHhHhHHHHHHHHH
Q 022524 127 SSFLVAMGDISLRKTAVEEKRA 148 (295)
Q Consensus 127 ~sl~~ai~~Lt~e~~~~e~~~~ 148 (295)
.-|-..|-++...+..++....
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a 47 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALA 47 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544444
No 174
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=42.60 E-value=2.9e+02 Score=25.80 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022524 102 PSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD 181 (295)
Q Consensus 102 s~~G~~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d 181 (295)
+..|..|++++..++..-.........||.+|..+.-.-..+|.+ ++.. .+++. .+|
T Consensus 42 ~~A~~~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~-------lk~f----~~~L~---------~~l--- 98 (231)
T cd07643 42 IVATSAFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETK-------LKQF----TSALM---------DCL--- 98 (231)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH-------HHHH----HHHHH---------HHH---
Confidence 456667888887777443332233557888877654333333332 2222 22221 111
Q ss_pred cccchhhHHHHHHhHHHH-HhhHHHH
Q 022524 182 VAPCEAQMENWKTNLAVM-ASKERQY 206 (295)
Q Consensus 182 ~~~~~~~~~~~~r~~k~L-~aK~~Ey 206 (295)
+.+++.++++|.+++-.| +.-..+|
T Consensus 99 I~pLe~k~E~wkk~~~~ldKd~~k~~ 124 (231)
T cd07643 99 VNPLQEKIEEWKKVANQLDKDHAKEY 124 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123447778998887655 3346666
No 175
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=42.56 E-value=5.9e+02 Score=29.44 Aligned_cols=13 Identities=0% Similarity=0.171 Sum_probs=5.2
Q ss_pred HHHHHHhHhHHHH
Q 022524 131 VAMGDISLRKTAV 143 (295)
Q Consensus 131 ~ai~~Lt~e~~~~ 143 (295)
..+..++.+.+++
T Consensus 472 e~i~~lk~~~~el 484 (1317)
T KOG0612|consen 472 ETIEKLKSEESEL 484 (1317)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 176
>PRK00295 hypothetical protein; Provisional
Probab=42.04 E-value=96 Score=23.16 Aligned_cols=24 Identities=0% Similarity=0.021 Sum_probs=14.1
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHH
Q 022524 191 NWKTNLAVMASKERQYLQQYNNYK 214 (295)
Q Consensus 191 ~~~r~~k~L~aK~~Ey~~ri~~le 214 (295)
..++.+..|..++..+.+|+...+
T Consensus 30 ~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 30 EQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445666666666666666555
No 177
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=41.64 E-value=2.7e+02 Score=25.27 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=36.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 224 PEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLE 284 (295)
Q Consensus 224 ~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~ 284 (295)
+.++......+.-++..+..++..++..+. +.|-=.++++..++.+..++..++.++.
T Consensus 145 ~~l~~a~~~~l~ae~~~l~~~~~~le~el~---s~~~rq~L~~~qrdl~~~~~~~l~~~l~ 202 (240)
T PF12795_consen 145 SPLSEAQRWLLQAELAALEAQIEMLEQELL---SNNNRQELLQLQRDLLKARIQRLQQQLQ 202 (240)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666666666666665 3444466666666667777777666654
No 178
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=41.34 E-value=4.6e+02 Score=27.81 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=46.9
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHH---HhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHH
Q 022524 192 WKTNLAVMASKERQYLQQYNNYKA---LLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALA 268 (295)
Q Consensus 192 ~~r~~k~L~aK~~Ey~~ri~~le~---~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~k 268 (295)
..+|.+.|-..+.++-+++.--+. .|....++.. .-|....++...|-.-+..++.-+. +++|+...= ..
T Consensus 80 q~~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~---~~l~~~e~a~~~L~~Al~~i~~~~~---~~~~~~~~M-~A 152 (701)
T PF09763_consen 80 QSANQKLLLNELENLLDTLSIPEEHLEALRNASLSSP---DGLEKIEEAAEALYKALKAIRPDLE---KLDPGLGQM-RA 152 (701)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCCCCc---ccHHHHHHHHHHHHHHHHhcccccc---cCCCcHHHH-HH
Confidence 356777777777777777632222 2333333222 1244444455555554444444333 788887422 23
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022524 269 IEDKKRQYAAAEKYLEDVL 287 (295)
Q Consensus 269 iEear~EL~~Le~~l~~~~ 287 (295)
+.+-|.+|+.+...|-..+
T Consensus 153 v~er~~~~~~~~~~F~~r~ 171 (701)
T PF09763_consen 153 VKERREEYEKVSDKFCKRL 171 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466666776666654443
No 179
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.09 E-value=3.4e+02 Score=26.21 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=50.7
Q ss_pred HcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHH
Q 022524 118 LLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLA 197 (295)
Q Consensus 118 ~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k 197 (295)
=.||+.|+|..|.. -|+.....+.+.+.++.--.+.|++ .=+.+..|+.+|..+++|+.+-+=.-.++|--+|
T Consensus 48 NHGikPP~PEQYLT---PLQQKEV~iRHLkakLkes~~~l~d----RetEI~eLksQL~RMrEDWIEEECHRVEAQLALK 120 (305)
T PF15290_consen 48 NHGIKPPNPEQYLT---PLQQKEVCIRHLKAKLKESENRLHD----RETEIDELKSQLARMREDWIEEECHRVEAQLALK 120 (305)
T ss_pred CCCCCCCCHHHhcC---hHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899987643 2344444444444433333333433 3344556666888888875322211123333344
Q ss_pred HHHhhHHHHHHHHHHHHHHhhh
Q 022524 198 VMASKERQYLQQYNNYKALLNR 219 (295)
Q Consensus 198 ~L~aK~~Ey~~ri~~le~~l~~ 219 (295)
--..-+.++++=|.+.++.|..
T Consensus 121 EARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 121 EARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhch
Confidence 4444566666666666666653
No 180
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=40.96 E-value=9 Score=40.72 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHhh
Q 022524 193 KTNLAVMASKERQYLQQYNNYKALLN 218 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey~~ri~~le~~l~ 218 (295)
.+....++.++.+|+.+|..++..+.
T Consensus 355 l~~~~~~~~qle~~k~qi~eLe~~l~ 380 (713)
T PF05622_consen 355 LKKARALKSQLEEYKKQIQELEQKLS 380 (713)
T ss_dssp --------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666555443
No 181
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=40.73 E-value=3.8e+02 Score=26.70 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=24.4
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLH 288 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~ 288 (295)
.....|..++..+++++..+-. ..+++.++.||++....-++..++
T Consensus 349 ~~~~~L~~~~~~l~~~~~~~~~-------~~~~l~~L~Re~~~~r~~ye~lL~ 394 (458)
T COG3206 349 QQEAALEKELAQLKGRLSKLPK-------LQVQLRELEREAEAARSLYETLLQ 394 (458)
T ss_pred HHHHHHHHHHHHHHHHHhhchH-------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444 444455666666666655554443
No 182
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=40.68 E-value=2.9e+02 Score=25.26 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=46.6
Q ss_pred HHHHHHHH-HhccccccCCChhHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 022524 84 AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKIL 157 (295)
Q Consensus 84 a~~l~~lL-e~lgls~~sLs~~G~~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L 157 (295)
+-+.+||| +.|.-...++-..-...-++|...-.+.+++..++...+.+++ .+.-..+..-..+..+|+.+
T Consensus 19 G~hKRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln---~~ye~s~~~A~~V~~RI~~v 90 (201)
T PF11172_consen 19 GVHKRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALN---DEYESSEDAAEEVSDRIDAV 90 (201)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 35678875 7776555667666777778888888888888888876665544 45544444444444455444
No 183
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=40.40 E-value=2.9e+02 Score=25.15 Aligned_cols=93 Identities=10% Similarity=0.091 Sum_probs=55.6
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHH-HHHHH-HHHhcHhHHHhhhhhcCCCCCHHHHHH
Q 022524 190 ENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMA-EHRKE-LEKKTKPILDTLRSYQDLPPDKALAAL 267 (295)
Q Consensus 190 ~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~-e~~~e-L~~~~k~L~~kL~sy~dLPpd~~lAr~ 267 (295)
.+| ....|+..+.++..++...+.....++-+. -+...++..+ |.++. .+.++..++. .=.+=+.|+...+-
T Consensus 94 ~dw--EevrLkrELa~Le~~l~~~~~~~~~~~~~~-~~~~~lvk~e~EqLL~YK~~ql~~~~~---~~~~~~~~l~~v~~ 167 (195)
T PF12761_consen 94 TDW--EEVRLKRELAELEEKLSKVEQAAESRRSDT-DSKPALVKREFEQLLDYKERQLRELEE---GRSKSGKNLKSVRE 167 (195)
T ss_pred Cch--HHHHHHHHHHHHHHHHHHHHHHHHhcccCC-cchHHHHHHHHHHHHHHHHHHHHhhhc---cCCCCCCCHHHHHH
Confidence 355 455677777777777777776655532211 1233443332 33333 2333333333 44566788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022524 268 AIEDKKRQYAAAEKYLEDVLH 288 (295)
Q Consensus 268 kiEear~EL~~Le~~l~~~~~ 288 (295)
.|+..+.++..|+..|..+-+
T Consensus 168 Dl~~ie~QV~~Le~~L~~k~~ 188 (195)
T PF12761_consen 168 DLDTIEEQVDGLESHLSSKKQ 188 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876644
No 184
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.97 E-value=2e+02 Score=25.17 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022524 235 AEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 235 ~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l 283 (295)
.++...+.++++.|+++|+. +..+++..|++.+.+..+.
T Consensus 153 ~~~~~~~~~ei~~lk~el~~----------~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEK----------KEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhc
Confidence 35555666666777776666 7777888888887777664
No 185
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=39.88 E-value=69 Score=26.43 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=43.4
Q ss_pred hhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHH
Q 022524 217 LNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKR 274 (295)
Q Consensus 217 l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~ 274 (295)
|...|++ |...|.+. ....|.+++..+..+.+....+||++...+.=|+.||+
T Consensus 69 L~~AGv~---Tv~~LA~~--~p~~L~~~l~~~n~~~~~~r~~~p~~~~v~~WI~~Ak~ 121 (122)
T PF14229_consen 69 LEHAGVD---TVEELAQR--NPQNLHQKLGRLNRKLKLRRQLCPSLEEVQEWIEQAKQ 121 (122)
T ss_pred HHHhCcC---cHHHHHhC--CHHHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHh
Confidence 5667884 55555443 57788899999999999999999999999999999974
No 186
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.65 E-value=3.8e+02 Score=26.41 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHHHHHhhcccCCCCCCC-C-ccChHHHHHHHHHHHhhHhhh
Q 022524 22 ADVKAWLASQFEASAKEVPA-F-EYTSRSVAHLYNLATLSQAKT 63 (295)
Q Consensus 22 s~V~sWL~~~f~~~~~pvP~-f-ErN~~Tl~~L~~La~~neaaD 63 (295)
+-.-+||-++.| .+-+-|+ | ..|+-+-++|..|-.++-..|
T Consensus 46 ~~L~~WL~~~~g-~~f~~p~e~DDPn~~~~~Il~~lr~~g~~~d 88 (359)
T PF10498_consen 46 TSLCAWLISKAG-RKFEQPQEYDDPNATISNILDELRKLGVPVD 88 (359)
T ss_pred HHHHHHHHHhcC-CCCCCCcccCCHHHHHHHHHHHHHccCCCCC
Confidence 457899999986 2222122 3 356666678888887774433
No 187
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=39.31 E-value=5.3e+02 Score=27.97 Aligned_cols=174 Identities=15% Similarity=0.158 Sum_probs=91.3
Q ss_pred ccCCChhHHHHHHHHHH--------HHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 98 QESLPSNVVSSAQVLAN--------VANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLT 169 (295)
Q Consensus 98 ~~sLs~~G~~aL~aLa~--------~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~ 169 (295)
.++|-|++.....+|-. +.|+|...+-+.. ..+..|-.....+++.....+.+-.+|+.+|..+.+.+.
T Consensus 293 ~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~---~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AEle 369 (739)
T PF07111_consen 293 SDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHR---DSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELE 369 (739)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 36777888888877766 4555554444333 233344455555555555555566777777777766655
Q ss_pred HHHHHHhhhhhccccc-------hhhHHHHHHhHHH-----------HHhhHHHHHH---HHHHHHHHhhhcCCCCCCcH
Q 022524 170 YLKRTLGQLEDDVAPC-------EAQMENWKTNLAV-----------MASKERQYLQ---QYNNYKALLNRVGYTPEISH 228 (295)
Q Consensus 170 ~L~~~L~~L~~d~~~~-------~~~~~~~~r~~k~-----------L~aK~~Ey~~---ri~~le~~l~~~g~~~s~sh 228 (295)
.=+-.-+.|+.++... ..++...-..++. |.+....... |+..+..-++ -+...-.++
T Consensus 370 vERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlS-yAvrrv~ti 448 (739)
T PF07111_consen 370 VERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLS-YAVRRVHTI 448 (739)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHhcccchh
Confidence 4221112344444211 1111111111121 2222222222 2222221111 011122466
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLE 284 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~ 284 (295)
+-+|+..-.+..+..+-.|- +||...--++++...|.|=.++.++|.
T Consensus 449 qGL~Ark~Alaqlrqe~~~~---------~pp~~~dL~~ELqqLReERdRl~aeLq 495 (739)
T PF07111_consen 449 QGLMARKLALAQLRQEQCPP---------SPPSVTDLSLELQQLREERDRLDAELQ 495 (739)
T ss_pred HHHHHHHHHHHHHHhccCCC---------CCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666665554443 888888889999999999999988874
No 188
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=38.64 E-value=3.2e+02 Score=25.18 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHH---------hhh--cCCCCCCcHHHHHHH
Q 022524 166 ARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKAL---------LNR--VGYTPEISHGVLVEM 234 (295)
Q Consensus 166 ~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~---------l~~--~g~~~s~sh~~l~~~ 234 (295)
.+...|.+....++..+.......+....++..|..|+.+++.+...+... ++. .|++++..-
T Consensus 92 ~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~------ 165 (225)
T COG1842 92 EEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAM------ 165 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhH------
Confidence 333334333333333332233444455566777777777777776554432 221 344332222
Q ss_pred HHHHHHHHHhcHhHHHhhhhhcCC
Q 022524 235 AEHRKELEKKTKPILDTLRSYQDL 258 (295)
Q Consensus 235 ~e~~~eL~~~~k~L~~kL~sy~dL 258 (295)
..+..++.++.+.+.+-..+..|
T Consensus 166 -~~fer~e~kiee~ea~a~~~~el 188 (225)
T COG1842 166 -AAFERMEEKIEEREARAEAAAEL 188 (225)
T ss_pred -HHHHHHHHHHHHHHHHHHHhHHh
Confidence 34445556666666666666653
No 189
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.23 E-value=5.8e+02 Score=28.09 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=40.2
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc-CCCCCHH
Q 022524 200 ASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ-DLPPDKA 263 (295)
Q Consensus 200 ~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~-dLPpd~~ 263 (295)
-+++.-|++++.+.+.-....|+ +|.+.-.++.+|++-++.|..-..-+. ||..|-.
T Consensus 507 l~~~k~~q~kLe~sekEN~iL~i-------tlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls~D~a 564 (861)
T PF15254_consen 507 LVNVKSLQFKLEASEKENQILGI-------TLRQRDAEIERLRELTRTLQNSMAKLLSDLSVDSA 564 (861)
T ss_pred HHHHHHHhhhHHHHHhhhhHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 34455566666666655444444 677888889999999999988877765 7777754
No 190
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.18 E-value=4.2e+02 Score=28.28 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=9.8
Q ss_pred HhhHhhhHHHhHHHHHHH
Q 022524 57 TLSQAKTKAANIVAADFR 74 (295)
Q Consensus 57 ~~neaaD~e~~Ll~~d~~ 74 (295)
.++=--|.+|-.++.+.+
T Consensus 335 ~~~~~ddH~RDALAAA~k 352 (652)
T COG2433 335 KISVSDDHERDALAAAYK 352 (652)
T ss_pred CCCCCCchHHHHHHHHHH
Confidence 344445666766655443
No 191
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=37.50 E-value=3.3e+02 Score=25.04 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=24.4
Q ss_pred cCCChhHHHHHHHHHHHHHH-cCCCCCchhHHHHHHHHHhH
Q 022524 99 ESLPSNVVSSAQVLANVANL-LNIRDTELSSFLVAMGDISL 138 (295)
Q Consensus 99 ~sLs~~G~~aL~aLa~~A~~-Lg~~dts~~sl~~ai~~Lt~ 138 (295)
..++..+..++++|+.+|.. .+.+ ....+|.++..+.-
T Consensus 37 ~a~~~a~~~~~dAl~kia~~A~~s~--~sk~lG~~L~~i~~ 75 (223)
T cd07605 37 QALSQAAKVFFDALAKIGELASQSR--GSQELGEALKQIVD 75 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC--cchHHHHHHHHHHH
Confidence 34567788888888888855 3333 44567777766443
No 192
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=37.00 E-value=2.6e+02 Score=23.74 Aligned_cols=34 Identities=26% Similarity=0.062 Sum_probs=16.2
Q ss_pred HHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHH
Q 022524 240 ELEKKTKPILDTLRSYQDLPPDKALAALAIEDKK 273 (295)
Q Consensus 240 eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear 273 (295)
++..-+..|.+.|++-++--..+....-.|++++
T Consensus 123 el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~ 156 (160)
T PF13094_consen 123 ELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSY 156 (160)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3334444444555555554444444444444444
No 193
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=37.00 E-value=2e+02 Score=26.57 Aligned_cols=65 Identities=8% Similarity=0.061 Sum_probs=45.7
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhh
Q 022524 190 ENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRS 254 (295)
Q Consensus 190 ~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~s 254 (295)
-++...|+.=.....+...++..++..+.......+...+...+...+...|.++++.|+.+|+.
T Consensus 203 LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 203 LDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQLSD 267 (268)
T ss_dssp HHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555566667778888888888777655566677888888899999999999988863
No 194
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.45 E-value=4e+02 Score=26.14 Aligned_cols=17 Identities=6% Similarity=0.124 Sum_probs=8.7
Q ss_pred HHHHhHhHHHHHHHHHH
Q 022524 133 MGDISLRKTAVEEKRAK 149 (295)
Q Consensus 133 i~~Lt~e~~~~e~~~~r 149 (295)
+.+|..+-.++++..+.
T Consensus 6 W~eL~~efq~Lqethr~ 22 (330)
T PF07851_consen 6 WEELQKEFQELQETHRS 22 (330)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555443
No 195
>PLN02320 seryl-tRNA synthetase
Probab=36.34 E-value=4.5e+02 Score=27.29 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=46.3
Q ss_pred HHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHH-------hhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022524 210 YNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILD-------TLRSYQDLPPDKALAALAIEDKKRQYAAAEKY 282 (295)
Q Consensus 210 i~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~-------kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~ 282 (295)
...+...+..+|++. ....|.++.+.+..+..++..|+. ++.. ..-+.+....+.+....+.++..++.+
T Consensus 76 ~~~v~~~l~~R~~~~--~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~ 152 (502)
T PLN02320 76 KEAVAINIRNRNSNA--NLELVLELYENMLALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEED 152 (502)
T ss_pred HHHHHHHHHhcCCCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566778753 367888888776666665555554 4443 122356666777777788888888777
Q ss_pred HHHH
Q 022524 283 LEDV 286 (295)
Q Consensus 283 l~~~ 286 (295)
+...
T Consensus 153 ~~~~ 156 (502)
T PLN02320 153 LVKL 156 (502)
T ss_pred HHHH
Confidence 6443
No 196
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=36.26 E-value=4.4e+02 Score=26.12 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=34.5
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 022524 198 VMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYA 277 (295)
Q Consensus 198 ~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~ 277 (295)
.+..++...+.++..+...|....+. ..|... ++++..|..+|. ...+..++..+.+|.
T Consensus 324 a~~~~L~~~~~~L~~l~~rL~~lsP~-----~~L~r~-------~qrL~~L~~rL~---------~a~~~~L~~~~~rL~ 382 (438)
T PRK00286 324 ALERRLRLAKQRLERLSQRLQQQNPQ-----RRIERA-------QQRLEQLEQRLR---------RAMRRQLKRKRQRLE 382 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHH-----HHHHHH-------HHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 35556666666666666665544331 122222 233333334432 224566667777777
Q ss_pred HHHHHHH
Q 022524 278 AAEKYLE 284 (295)
Q Consensus 278 ~Le~~l~ 284 (295)
.+..+|.
T Consensus 383 ~l~~rL~ 389 (438)
T PRK00286 383 ALAQQLE 389 (438)
T ss_pred HHHHHHH
Confidence 7776664
No 197
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=36.14 E-value=4.1e+02 Score=25.66 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022524 263 ALAALAIEDKKRQYAAAEKYLEDVLHSAL 291 (295)
Q Consensus 263 ~lAr~kiEear~EL~~Le~~l~~~~~~~~ 291 (295)
.-++..||.+..|+.++..+|++.-+.+.
T Consensus 105 ~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 105 NSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44666888999999999999987766654
No 198
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.03 E-value=1.5e+02 Score=22.81 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhh
Q 022524 197 AVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY 255 (295)
Q Consensus 197 k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy 255 (295)
+-+......++-|+..+.+.+....- .+.++.+..+.+..|++++.-...-|..|
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpg----i~~s~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPG----IDRSVEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC----ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 199
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.28 E-value=6.7e+02 Score=27.90 Aligned_cols=21 Identities=5% Similarity=0.170 Sum_probs=14.7
Q ss_pred HHHHHhHHHHHhhHHHHHHHH
Q 022524 190 ENWKTNLAVMASKERQYLQQY 210 (295)
Q Consensus 190 ~~~~r~~k~L~aK~~Ey~~ri 210 (295)
+...-.++.|.+.+.||+.++
T Consensus 482 e~~isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 482 ELMISEIDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334456777888888888775
No 200
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.25 E-value=5.9e+02 Score=27.25 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=9.5
Q ss_pred HHHHhccccccCCChhHH
Q 022524 89 EILENVGLAQESLPSNVV 106 (295)
Q Consensus 89 ~lLe~lgls~~sLs~~G~ 106 (295)
..|+.+ +.-+|+.|.
T Consensus 359 ~kl~~v---Er~~~~~g~ 373 (652)
T COG2433 359 PKLEKV---ERKLPELGI 373 (652)
T ss_pred HHHHHH---HHhcccccc
Confidence 366666 566676665
No 201
>PRK10698 phage shock protein PspA; Provisional
Probab=35.01 E-value=3.5e+02 Score=24.62 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=14.6
Q ss_pred HHHHHHHHhcHhHHHhhhhhcC
Q 022524 236 EHRKELEKKTKPILDTLRSYQD 257 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~d 257 (295)
..+..+.+++..++.+.+.|..
T Consensus 166 ~~f~rmE~ki~~~Ea~aea~~~ 187 (222)
T PRK10698 166 ARFESFERRIDQMEAEAESHGF 187 (222)
T ss_pred HHHHHHHHHHHHHHHHHhHhhc
Confidence 3445566777777777777743
No 202
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=34.87 E-value=4.4e+02 Score=25.64 Aligned_cols=123 Identities=15% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHH
Q 022524 70 AADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAK 149 (295)
Q Consensus 70 ~~d~~~~~~ey~~ea~~l~~lLe~lgls~~sLs~~G~~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~r 149 (295)
+.-++.....|.....++ +.++| ..|+..- ..++.+.-.|..+.-+....-..|..|.+++.++++....
T Consensus 183 a~~L~~et~~~EekEqqL--v~dcv----~QL~~An----~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~ 252 (306)
T PF04849_consen 183 ASQLKTETDTYEEKEQQL--VLDCV----KQLSEAN----QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQ 252 (306)
T ss_pred HHHhhHHHhhccHHHHHH--HHHHH----HHhhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhh
Q 022524 150 VQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASK 202 (295)
Q Consensus 150 l~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK 202 (295)
.-.+.+.|+.+|......=..|...|.+|++--..+..-..+.+..+|.++.|
T Consensus 253 ~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 253 LAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
No 203
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.71 E-value=7.4e+02 Score=28.28 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=46.6
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHH-----hhhcCCCCCC---cHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCC
Q 022524 190 ENWKTNLAVMASKERQYLQQYNNYKAL-----LNRVGYTPEI---SHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPD 261 (295)
Q Consensus 190 ~~~~r~~k~L~aK~~Ey~~ri~~le~~-----l~~~g~~~s~---sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd 261 (295)
.+-.+.+.-...-..+++.++...+.. ....|+. -- -|+--.+.+.+..++..++.-|+-+|.--.+ .|
T Consensus 728 ~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~-ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d 804 (1141)
T KOG0018|consen 728 SEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR-IREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ--KD 804 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee-eehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--cc
Confidence 334444444444445555555444432 2234552 00 1112333446777888888888888876665 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022524 262 KALAALAIEDKKRQYAAAEKYLE 284 (295)
Q Consensus 262 ~~lAr~kiEear~EL~~Le~~l~ 284 (295)
-+.++|..++.+..++.+++
T Consensus 805 ---~~~~ve~~~~~v~~~~~~~~ 824 (1141)
T KOG0018|consen 805 ---TQRRVERWERSVEDLEKEIE 824 (1141)
T ss_pred ---HHHHHHHHHHHHHHHHHhHH
Confidence 34555555555555555543
No 204
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=34.50 E-value=3.5e+02 Score=24.47 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhh
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTL 252 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL 252 (295)
.+++.+..++.+++++...++.+.
T Consensus 196 ~a~~~Le~ei~~l~~~~~~~~~~~ 219 (221)
T PF05700_consen 196 VACEELEQEIEQLKRKAAELKENQ 219 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 356666677777777766666554
No 205
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=34.26 E-value=3.8e+02 Score=24.81 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=34.9
Q ss_pred CCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Q 022524 121 IRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIAR-LTYLKRTLGQL 178 (295)
Q Consensus 121 ~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~-~~~L~~~L~~L 178 (295)
++..++.. =..+....+..+|++..++.+.++.|-.+ +++++. +..+.+.+..|
T Consensus 15 ~k~~E~D~---wF~~k~~~ie~LE~qLk~L~k~~~~lv~~-r~eLa~~~~eFa~s~~~L 69 (234)
T cd07665 15 IKMNESDV---WFEEKLQEVECEEQRLRKLHAVVETLVNH-RKELALNTALFAKSLAML 69 (234)
T ss_pred cCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34444443 34566778888999999999999999888 666554 33444444433
No 206
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.01 E-value=4.2e+02 Score=26.97 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022524 264 LAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 264 lAr~kiEear~EL~~Le~~l~~~ 286 (295)
.+..+++++++++..++.+|...
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666666543
No 207
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.97 E-value=2.9e+02 Score=23.31 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022524 153 ESKILLDYTRKAIARLTYLKRTLGQLEDDV 182 (295)
Q Consensus 153 ~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~ 182 (295)
||+.+-.+++....-....++.+.+++.++
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv 98 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEVREDV 98 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 333443333333333333333444444333
No 208
>PRK11519 tyrosine kinase; Provisional
Probab=33.54 E-value=3.2e+02 Score=29.22 Aligned_cols=89 Identities=15% Similarity=0.083 Sum_probs=43.0
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHhhh----cCC-CCCCcH----HHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCH
Q 022524 192 WKTNLAVMASKERQYLQQYNNYKALLNR----VGY-TPEISH----GVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDK 262 (295)
Q Consensus 192 ~~r~~k~L~aK~~Ey~~ri~~le~~l~~----~g~-~~s~sh----~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~ 262 (295)
..+..+||..++++++.++...+..+.. .|. +.+... +.+.++..++.++..+...|.. .|.+=-|.+
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~---~y~~~hP~v 341 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISK---LYTKEHPAY 341 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcccCcHH
Confidence 3445566666666666666666655432 232 111111 1222222333333333333332 366556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022524 263 ALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 263 ~lAr~kiEear~EL~~Le~~l 283 (295)
..++..+..+++++..++.++
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~~ 362 (719)
T PRK11519 342 RTLLEKRKALEDEKAKLNGRV 362 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 656666666666666555444
No 209
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=33.22 E-value=4.7e+02 Score=25.58 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 022524 231 LVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQY 276 (295)
Q Consensus 231 l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL 276 (295)
|..+..++.++..++..+..+ |.+=-|.+-.++.+|+..++++
T Consensus 256 i~~l~~~l~~le~~l~~l~~~---y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQR---LGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHH
Confidence 333334444444444433222 4444555555555555555544
No 210
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=33.18 E-value=6.2e+02 Score=26.91 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=12.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHh
Q 022524 197 AVMASKERQYLQQYNNYKALL 217 (295)
Q Consensus 197 k~L~aK~~Ey~~ri~~le~~l 217 (295)
+-|..|+.+++.++..++..+
T Consensus 198 keL~~kl~~l~~~l~~~~e~l 218 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKEKL 218 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666665555543
No 211
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.09 E-value=1.6e+02 Score=30.33 Aligned_cols=20 Identities=5% Similarity=-0.120 Sum_probs=10.3
Q ss_pred HHHhhHHHHHHHHHHHHHHh
Q 022524 198 VMASKERQYLQQYNNYKALL 217 (295)
Q Consensus 198 ~L~aK~~Ey~~ri~~le~~l 217 (295)
-+..|+++|...++.|+.++
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544
No 212
>PRK10869 recombination and repair protein; Provisional
Probab=32.97 E-value=5.8e+02 Score=26.48 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=35.6
Q ss_pred HhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022524 243 KKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSA 290 (295)
Q Consensus 243 ~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~~~ 290 (295)
.....++.+|..+.+..-++..-+.+++.++.+|..+-..|....+.+
T Consensus 324 ~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 324 QHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777888888888888888888887777666654
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=32.94 E-value=5.6e+02 Score=26.37 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=6.3
Q ss_pred hHHHHHhhHHHHHHH
Q 022524 195 NLAVMASKERQYLQQ 209 (295)
Q Consensus 195 ~~k~L~aK~~Ey~~r 209 (295)
|......|+.+...+
T Consensus 411 nq~vw~~kl~~~~e~ 425 (493)
T KOG0804|consen 411 NQDVWRGKLKELEER 425 (493)
T ss_pred hHHHHHHHHHHHHHH
Confidence 334444444444333
No 214
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.94 E-value=3.8e+02 Score=24.34 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=5.9
Q ss_pred HHhHhHHHHHHHHH
Q 022524 135 DISLRKTAVEEKRA 148 (295)
Q Consensus 135 ~Lt~e~~~~e~~~~ 148 (295)
.+..++.+++.+..
T Consensus 97 ~le~el~~l~~~l~ 110 (206)
T PRK10884 97 DLENQVKTLTDKLN 110 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 215
>PLN02943 aminoacyl-tRNA ligase
Probab=32.84 E-value=1.3e+02 Score=33.44 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=53.7
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCC
Q 022524 194 TNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDL 258 (295)
Q Consensus 194 r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL 258 (295)
...+-|..++..++..+..++..|+.-|+.....-+.+....+++.++++++..++..|..+.++
T Consensus 889 ~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~~ 953 (958)
T PLN02943 889 AEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKST 953 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556888899999999999999998888766776777777788899999999999998888764
No 216
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.62 E-value=4.9e+02 Score=25.98 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=36.0
Q ss_pred HHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHH-------HhhhhhcCCCCC-HHHHHHHHHHHHHHHHHHHHHH
Q 022524 212 NYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPIL-------DTLRSYQDLPPD-KALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 212 ~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~-------~kL~sy~dLPpd-~~lAr~kiEear~EL~~Le~~l 283 (295)
.....+..+|++.+.....|+.+.+...++..++..|+ +++.....-..+ .+..+.++...+.++..++.++
T Consensus 13 ~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 92 (418)
T TIGR00414 13 LVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAAL 92 (418)
T ss_pred HHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566665422124566666555444444444443 344332222223 4455555666666666666655
Q ss_pred HH
Q 022524 284 ED 285 (295)
Q Consensus 284 ~~ 285 (295)
..
T Consensus 93 ~~ 94 (418)
T TIGR00414 93 KA 94 (418)
T ss_pred HH
Confidence 43
No 217
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=32.54 E-value=2.4e+02 Score=26.49 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=31.1
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022524 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (295)
Q Consensus 131 ~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~ 179 (295)
+...|+-..+.++.++..+++++-+.|.+-+...-+....+...|+.|+
T Consensus 128 ~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 128 PEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888887777777775555544444444444444444
No 218
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=32.51 E-value=1.4e+02 Score=32.62 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=49.6
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc
Q 022524 193 KTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ 256 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~ 256 (295)
....+-|..++..++..+..++..|+.-|+......+.+....+++.+++.++..++..|..+.
T Consensus 810 ~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 810 EAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445568888888888888888888888886666666777777888888888888888887764
No 219
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=32.50 E-value=2.5e+02 Score=24.30 Aligned_cols=56 Identities=5% Similarity=0.088 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHHHHHHHHhcHhHHHhh---hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 226 ISHGVLVEMAEHRKELEKKTKPILDTL---RSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 226 ~sh~~l~~~~e~~~eL~~~~k~L~~kL---~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~ 286 (295)
+|-+-...+.+++..|+.....+-..+ +++-||.-|-. +..||++++.++.++...
T Consensus 8 lT~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENae-----y~aak~~q~~~e~RI~~L 66 (158)
T PRK05892 8 LAPAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAE-----AIQRADELARLDDRINEL 66 (158)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhh-----HHHHHHHHHHHHHHHHHH
Confidence 566666777777777766444443443 78889998875 678888888888776554
No 220
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=32.39 E-value=4.3e+02 Score=24.85 Aligned_cols=79 Identities=24% Similarity=0.246 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcC--CCCCHHHHHHHHHHHHHHHHHH
Q 022524 202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQD--LPPDKALAALAIEDKKRQYAAA 279 (295)
Q Consensus 202 K~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~d--LPpd~~lAr~kiEear~EL~~L 279 (295)
.+.-++......+. |...|. ++...+.+....|...+.++...+.++..+.. .+.+...++..++.++.++...
T Consensus 122 ~l~~a~~~~~r~~~-L~~~g~---vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a 197 (331)
T PRK03598 122 AYDYAQNFYNRQQG-LWKSRT---ISANDLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQA 197 (331)
T ss_pred HHHHHHHHHHHHHH-HHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344433 666777 56667777667777777777777777776642 2345556666677777777666
Q ss_pred HHHHH
Q 022524 280 EKYLE 284 (295)
Q Consensus 280 e~~l~ 284 (295)
...++
T Consensus 198 ~~~l~ 202 (331)
T PRK03598 198 ELNLQ 202 (331)
T ss_pred HHHHh
Confidence 65553
No 221
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=32.11 E-value=59 Score=27.02 Aligned_cols=14 Identities=36% Similarity=0.328 Sum_probs=12.2
Q ss_pred hhcCCCCCHHHHHH
Q 022524 254 SYQDLPPDKALAAL 267 (295)
Q Consensus 254 sy~dLPpd~~lAr~ 267 (295)
-|.+||.||..|..
T Consensus 36 ls~~Lpadp~qA~~ 49 (113)
T TIGR03757 36 LSAGLPADPQQAAA 49 (113)
T ss_pred HhccCCCCHHHHHH
Confidence 48999999998866
No 222
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=31.81 E-value=4.6e+02 Score=25.01 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHhhHhh
Q 022524 46 SRSVAHLYNLATLSQAK 62 (295)
Q Consensus 46 ~~Tl~~L~~La~~neaa 62 (295)
|+-.+-|+.|...-..-
T Consensus 53 pe~sr~L~~LIk~EK~v 69 (271)
T PF13805_consen 53 PELSRKLQRLIKAEKSV 69 (271)
T ss_dssp -TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHH
Confidence 34446777776654443
No 223
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.59 E-value=8.3e+02 Score=27.90 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=15.4
Q ss_pred CCCCCHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 022524 257 DLPPDKALAA-------LAIEDKKRQYAAAEKYLED 285 (295)
Q Consensus 257 dLPpd~~lAr-------~kiEear~EL~~Le~~l~~ 285 (295)
.+||+...+. ..+++......++...+..
T Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 920 (1201)
T PF12128_consen 885 SEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELKK 920 (1201)
T ss_pred CCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578887777 3334444444444444433
No 224
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.52 E-value=8.3e+02 Score=27.86 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=9.6
Q ss_pred HHHHHHHhhHhhhHHH
Q 022524 51 HLYNLATLSQAKTKAA 66 (295)
Q Consensus 51 ~L~~La~~neaaD~e~ 66 (295)
+|.+|=..|++..+=+
T Consensus 672 ~L~~l~~l~~~~~~~~ 687 (1174)
T KOG0933|consen 672 LLRQLQKLKQAQKELR 687 (1174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666666433
No 225
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=30.94 E-value=42 Score=26.20 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=25.6
Q ss_pred HHHHHHHhhcccCCCCCCCCccChHHHHHHHH
Q 022524 23 DVKAWLASQFEASAKEVPAFEYTSRSVAHLYN 54 (295)
Q Consensus 23 ~V~sWL~~~f~~~~~pvP~fErN~~Tl~~L~~ 54 (295)
-+.+||.+.|+ +-.+|+-|.=-+||-.|..
T Consensus 34 ~l~~~L~~~yp--~i~~Ps~e~l~~~L~~Li~ 63 (80)
T PF10264_consen 34 TLREHLRKHYP--GIAIPSQEVLYNTLGTLIK 63 (80)
T ss_pred HHHHHHHHhCC--CCCCCCHHHHHHHHHHHHH
Confidence 48999999998 8889999988888877753
No 226
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.90 E-value=4.3e+02 Score=26.98 Aligned_cols=86 Identities=12% Similarity=0.219 Sum_probs=39.7
Q ss_pred HHHHHHHH-HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHH
Q 022524 128 SFLVAMGD-ISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQY 206 (295)
Q Consensus 128 sl~~ai~~-Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey 206 (295)
+|-|-|.. |..++....+-...+++++..|-.-+.+-. -...|.+.+..-+.|-.++..-.......+..|+.|...-
T Consensus 96 ~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~-~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~a 174 (542)
T KOG0993|consen 96 TYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQ-YQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKA 174 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhH
Confidence 35555554 555555555444456666666533322200 0122233333333332222222222333456677776666
Q ss_pred HHHHHHHH
Q 022524 207 LQQYNNYK 214 (295)
Q Consensus 207 ~~ri~~le 214 (295)
.++|..++
T Consensus 175 E~~i~El~ 182 (542)
T KOG0993|consen 175 EQRIDELS 182 (542)
T ss_pred HHHHHHHH
Confidence 66666555
No 227
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=30.82 E-value=3.9e+02 Score=25.82 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=13.3
Q ss_pred HHHcCCCCCchhHHHHHHHHHhHhHHHHH
Q 022524 116 ANLLNIRDTELSSFLVAMGDISLRKTAVE 144 (295)
Q Consensus 116 A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e 144 (295)
|-.|.+..|..+.++|.| |+.++|-.+
T Consensus 65 ~r~lat~l~~~g~~i~e~--ls~~~~~~~ 91 (338)
T KOG3647|consen 65 ARELATDLTQRGTTICEM--LSKELLHKE 91 (338)
T ss_pred HHHHHhhccccchHHHHH--HHHHHHHHH
Confidence 344444445555555555 445555443
No 228
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=30.81 E-value=4.6e+02 Score=24.69 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=18.1
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHhhh
Q 022524 190 ENWKTNLAVMASKERQYLQQYNNYKALLNR 219 (295)
Q Consensus 190 ~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~ 219 (295)
....++-..+...+..|+.+|+.-+.+|..
T Consensus 183 ~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~ 212 (259)
T PF08657_consen 183 AALRQRYNQLSNSIAYLEAEVAEQEAQLER 212 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555666667777777666666654
No 229
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.78 E-value=4.2e+02 Score=24.22 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=15.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q 022524 256 QDLPPDKALAALAIEDKKRQYAAA 279 (295)
Q Consensus 256 ~dLPpd~~lAr~kiEear~EL~~L 279 (295)
.|+|-..+.=+..|+..+.-+.+-
T Consensus 120 ~d~Pf~~~eR~~Rl~~L~~~l~~~ 143 (251)
T PF11932_consen 120 LDLPFLLEERQERLARLRAMLDDA 143 (251)
T ss_pred cCCCCChHHHHHHHHHHHHhhhcc
Confidence 378888875555556666655443
No 230
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=30.73 E-value=6.4e+02 Score=26.32 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=44.2
Q ss_pred hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhh--hcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhh
Q 022524 187 AQMENWKTNLAVMASKERQYLQQYNNYKALLN--RVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY 255 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~--~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy 255 (295)
.+.+......+.+...+.+...+|..++.-|. .+||+ ..|-.|.|++..|.+++..-...+..+
T Consensus 448 ~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE-----~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 448 KRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYE-----EQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566777778888888888887765 35553 567777788888888777777766654
No 231
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=30.67 E-value=53 Score=29.21 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=24.6
Q ss_pred HHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022524 237 HRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSA 290 (295)
Q Consensus 237 ~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~~~ 290 (295)
.-.+|+.+++.|..++.... .+..+..-.|..-.-|+.+|+..-...
T Consensus 121 ~~~eL~~eI~~L~~~i~~le-------~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 121 TKNELEDEIKQLEKEIQRLE-------EIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456666666666666543 334444445555555555555544433
No 232
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=30.52 E-value=1.1e+02 Score=31.81 Aligned_cols=66 Identities=32% Similarity=0.345 Sum_probs=36.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc---------CCCCCHH-----------HHHHHHHHHHHHHHHH
Q 022524 220 VGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ---------DLPPDKA-----------LAALAIEDKKRQYAAA 279 (295)
Q Consensus 220 ~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~---------dLPpd~~-----------lAr~kiEear~EL~~L 279 (295)
.||+|. ..+.+-.+.+++.--+++++.|.+-|..+. .||||.. .++..|+.-+.+|..+
T Consensus 402 vG~dpe-~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~l 480 (543)
T COG1315 402 VGMDPE-IVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKESLLTAVNNTKITLRNSIEKIKAELEGL 480 (543)
T ss_pred eccCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHH
Confidence 345443 224444444444444445555554444444 4899943 2455666667777777
Q ss_pred HHHHHHH
Q 022524 280 EKYLEDV 286 (295)
Q Consensus 280 e~~l~~~ 286 (295)
..+|+..
T Consensus 481 qe~le~~ 487 (543)
T COG1315 481 QEELEVV 487 (543)
T ss_pred HHHHhhh
Confidence 7776654
No 233
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=30.11 E-value=5e+02 Score=24.88 Aligned_cols=11 Identities=0% Similarity=-0.163 Sum_probs=5.2
Q ss_pred hHHHHHHHHHH
Q 022524 104 NVVSSAQVLAN 114 (295)
Q Consensus 104 ~G~~aL~aLa~ 114 (295)
+|++-+.++.+
T Consensus 41 egSrE~Eaele 51 (333)
T KOG1853|consen 41 EGSREIEAELE 51 (333)
T ss_pred hhhHHHHHHHH
Confidence 45554444443
No 234
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.08 E-value=4.9e+02 Score=24.76 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCccC
Q 022524 19 ARIADVKAWLASQFEASAKEVPAFEYT 45 (295)
Q Consensus 19 ~~~s~V~sWL~~~f~~~~~pvP~fErN 45 (295)
.=++.|=.||...|. |+..=+++.-
T Consensus 20 ~LVAeiL~WLv~ryd--P~~~i~~~i~ 44 (267)
T PF10234_consen 20 ELVAEILRWLVKRYD--PDADIPGDID 44 (267)
T ss_pred HHHHHHHHHHHHHcC--CCCCCCCcCC
Confidence 567889999999998 4443445544
No 235
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.60 E-value=7.2e+02 Score=26.52 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=29.4
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKY 282 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~ 282 (295)
.+|.+|.++-+.|.++|... .+-+|++|.+|.|..+|+.+
T Consensus 170 seYSELEEENIsLQKqVs~L-------R~sQVEyEglkheikRleEe 209 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNL-------RQSQVEYEGLKHEIKRLEEE 209 (772)
T ss_pred HHHHHHHHhcchHHHHHHHH-------hhhhhhhhHHHHHHHHHHHH
Confidence 57888899999999988754 45566777777776666644
No 236
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=29.53 E-value=3.6e+02 Score=23.12 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=42.8
Q ss_pred HHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022524 215 ALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSAL 291 (295)
Q Consensus 215 ~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~~~~ 291 (295)
.-|..+||-.++-.--|.+. .+|..+...|..+|+. -+.++.++++|+..+...++...+++.
T Consensus 57 RTLKNRGYA~sCR~KRv~Qk----~eLE~~k~~L~qqv~~----------L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 57 RTLKNRGYAQSCRVKRVQQK----HELEKEKAELQQQVEK----------LKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34566777655554444433 3555666666665543 356777999999999999999988875
No 237
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=29.20 E-value=1.4e+02 Score=33.33 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=48.5
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCC
Q 022524 195 NLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDL 258 (295)
Q Consensus 195 ~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL 258 (295)
..+-|..++..++..+..++..|+.-|+.....-+.+....+++.+++.++..|++.|..+..|
T Consensus 930 E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~ 993 (995)
T PTZ00419 930 ELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKSL 993 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455777888888888888888888887655565677777788888888888888888877543
No 238
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=29.13 E-value=4.4e+02 Score=23.91 Aligned_cols=116 Identities=8% Similarity=0.149 Sum_probs=75.7
Q ss_pred hHHHhHHHHHHHHHHHHHhhhHHHHHHH--H-HhccccccCCChhHHHHHHHHHHHHHH----cC-CCCCchhHHHHHHH
Q 022524 63 TKAANIVAADFRQKAAEYRSQAARIREI--L-ENVGLAQESLPSNVVSSAQVLANVANL----LN-IRDTELSSFLVAMG 134 (295)
Q Consensus 63 D~e~~Ll~~d~~~~~~ey~~ea~~l~~l--L-e~lgls~~sLs~~G~~aL~aLa~~A~~----Lg-~~dts~~sl~~ai~ 134 (295)
+.+...++.++++.+.-+..-......+ + ..+ ..-|..-...-..|...-.. .. ....++..+-..|+
T Consensus 13 ~~~~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i----~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~ 88 (240)
T PF12795_consen 13 EPEQKALIQDLQQALSFLDEIKKQKKRAAEYQKQI----DQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLS 88 (240)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHH
Confidence 4566677788888777775333333332 4 355 56777766666666666222 22 23557778888888
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022524 135 DISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182 (295)
Q Consensus 135 ~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~ 182 (295)
.....+.+........+.++..+..-..+.-..+......+.++...+
T Consensus 89 ~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L 136 (240)
T PF12795_consen 89 QEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQL 136 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887777777776666666666666665666666554
No 239
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.04 E-value=9.1e+02 Score=27.56 Aligned_cols=32 Identities=16% Similarity=0.036 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022524 260 PDKALAALAIEDKKRQYAAAEKYLEDVLHSAL 291 (295)
Q Consensus 260 pd~~lAr~kiEear~EL~~Le~~l~~~~~~~~ 291 (295)
-||..||-+|+.+..-...+++..+.++-..|
T Consensus 958 ~~p~~are~l~~Lq~k~~~l~k~vn~~~m~ml 989 (1174)
T KOG0933|consen 958 YDPHEAREELKKLQEKKEKLEKTVNPKNMDML 989 (1174)
T ss_pred CCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHH
Confidence 46666666666666666666665555444333
No 240
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=29.01 E-value=5.9e+02 Score=25.38 Aligned_cols=22 Identities=9% Similarity=0.300 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHhc
Q 022524 73 FRQKAAEYRSQAARIREILENV 94 (295)
Q Consensus 73 ~~~~~~ey~~ea~~l~~lLe~l 94 (295)
++.+...+++.-.+++-.+.++
T Consensus 102 ~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 102 LEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555443
No 241
>PF15456 Uds1: Up-regulated During Septation
Probab=28.67 E-value=2.3e+02 Score=23.68 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=15.8
Q ss_pred CCcHHHHHHHHHHHHHHHHhcHhHHH
Q 022524 225 EISHGVLVEMAEHRKELEKKTKPILD 250 (295)
Q Consensus 225 s~sh~~l~~~~e~~~eL~~~~k~L~~ 250 (295)
..+|+.+.+-.+++....+++.++-.
T Consensus 70 ~~~~~~~~~~eeel~~~~rk~ee~~~ 95 (124)
T PF15456_consen 70 RFSRESSLKAEEELAESDRKCEELAQ 95 (124)
T ss_pred CCCcchHHHHHHHHHHHHhhHHHHHH
Confidence 34677777777776666655544433
No 242
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=28.63 E-value=4.6e+02 Score=26.01 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022524 264 LAALAIEDKKRQYAAAEKY 282 (295)
Q Consensus 264 lAr~kiEear~EL~~Le~~ 282 (295)
+|..+++.++.++..++.+
T Consensus 79 ~a~~e~~~l~~~~~~~e~~ 97 (360)
T TIGR00019 79 MAKEELEELEEKIEELEEQ 97 (360)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444445554444444
No 243
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=28.42 E-value=1.3e+02 Score=24.92 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=12.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 257 DLPPDKALAALAIEDKKRQYAAAEKYLED 285 (295)
Q Consensus 257 dLPpd~~lAr~kiEear~EL~~Le~~l~~ 285 (295)
+|||++- .+..++|.+|+.++..
T Consensus 17 ~Lp~~vR------~~~Er~L~~L~~~l~~ 39 (114)
T PF10153_consen 17 DLPADVR------VEKERELEALKRELEE 39 (114)
T ss_pred CCCHHHH------HHHHHHHHHHHHHHHH
Confidence 6666664 2344455555555544
No 244
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.33 E-value=7.2e+02 Score=26.13 Aligned_cols=14 Identities=7% Similarity=0.052 Sum_probs=5.1
Q ss_pred HHhHHHHHhhHHHH
Q 022524 193 KTNLAVMASKERQY 206 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey 206 (295)
.+.++.+..++..+
T Consensus 448 ~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 448 LRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 245
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=28.19 E-value=4.6e+02 Score=23.83 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 140 KTAVEEKRAKVQKESKILLDYTRKAIA 166 (295)
Q Consensus 140 ~~~~e~~~~rl~~~i~~L~~~l~k~l~ 166 (295)
+.+......++..+.+.+...+...+.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555444444443
No 246
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=28.05 E-value=5.9e+02 Score=25.01 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=41.9
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 022524 135 DISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (295)
Q Consensus 135 ~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le 214 (295)
|++..-+++..|..--|-+...|-.--+-+......|--++.+|+..+-.. ..+.+ -+.++..|+.|+.+.-..++
T Consensus 4 d~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLag-GaaaN---avrdYqrq~~elneEkrtLe 79 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAG-GAAAN---AVRDYQRQVQELNEEKRTLE 79 (351)
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344444555544443333444444444555666666666777777654110 11111 13455556666666666666
Q ss_pred HHhhhcCC
Q 022524 215 ALLNRVGY 222 (295)
Q Consensus 215 ~~l~~~g~ 222 (295)
.-|.+.-+
T Consensus 80 RELARaKV 87 (351)
T PF07058_consen 80 RELARAKV 87 (351)
T ss_pred HHHHHhhh
Confidence 65554333
No 247
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=27.71 E-value=2.5e+02 Score=20.68 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=24.7
Q ss_pred HHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhh
Q 022524 174 TLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLN 218 (295)
Q Consensus 174 ~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~ 218 (295)
.|.+++-++...++ ..-..+..|++.|+..+..++..+.
T Consensus 40 ~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 40 LLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555545433321 1235788899999999988887653
No 248
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=27.69 E-value=3.8e+02 Score=22.75 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhh
Q 022524 196 LAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTL 252 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL 252 (295)
+..+...++.|.-.+..+++++... ...|..+-+++.++...-+.|+++|
T Consensus 82 ~~e~qsli~~yE~~~~kLe~e~~~K-------dsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 82 IQEQQSLIKTYEIVVKKLEAELRAK-------DSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3344444555555555555543322 2245555556666665555555543
No 249
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=27.67 E-value=9e+02 Score=27.08 Aligned_cols=89 Identities=12% Similarity=-0.009 Sum_probs=43.1
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCC----CCCHHHHHHH
Q 022524 193 KTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDL----PPDKALAALA 268 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL----Ppd~~lAr~k 268 (295)
++-++--+-|.+-|-++...++..=...-| ....|.+..+.+.++++.+..+..++..-.|+ .-....-+..
T Consensus 336 rc~LlEarrk~egfddk~~eLEKkrd~al~----dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~d 411 (1265)
T KOG0976|consen 336 RCALLEARRKAEGFDDKLNELEKKRDMALM----DVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKD 411 (1265)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccch
Confidence 333444444455555555555543222222 33455555555555555554444444433333 2334444555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022524 269 IEDKKRQYAAAEKYLED 285 (295)
Q Consensus 269 iEear~EL~~Le~~l~~ 285 (295)
-|.++.||......++.
T Consensus 412 he~~kneL~~a~ekld~ 428 (1265)
T KOG0976|consen 412 HEAAKNELQEALEKLDL 428 (1265)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56777777766665543
No 250
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=27.45 E-value=8.2e+02 Score=26.61 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=14.4
Q ss_pred cCCChhHHHHHHHHHHH
Q 022524 99 ESLPSNVVSSAQVLANV 115 (295)
Q Consensus 99 ~sLs~~G~~aL~aLa~~ 115 (295)
.-|+++|...|+.+.++
T Consensus 585 ~lL~~~~~~~L~~~~~s 601 (806)
T PF05478_consen 585 TLLTPEEKRNLEDLRNS 601 (806)
T ss_pred cccCHHHHHHHHHHHhC
Confidence 45899999999999865
No 251
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.36 E-value=2e+02 Score=21.72 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=15.2
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHH
Q 022524 191 NWKTNLAVMASKERQYLQQYNNYKA 215 (295)
Q Consensus 191 ~~~r~~k~L~aK~~Ey~~ri~~le~ 215 (295)
..++.+..|..++.-+.+|+..++.
T Consensus 33 ~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 33 AHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344566666666667677765554
No 252
>PRK04758 hypothetical protein; Validated
Probab=27.32 E-value=1.8e+02 Score=25.98 Aligned_cols=88 Identities=20% Similarity=0.275 Sum_probs=51.0
Q ss_pred HHHHHHhhcccCCCCCCCCccChHHHHHHHHHHHhhHhhhHH--HhHHH-------HHHHHHHHHHhhhHHHHHHHHHhc
Q 022524 24 VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKA--ANIVA-------ADFRQKAAEYRSQAARIREILENV 94 (295)
Q Consensus 24 V~sWL~~~f~~~~~pvP~fErN~~Tl~~L~~La~~neaaD~e--~~Ll~-------~d~~~~~~ey~~ea~~l~~lLe~l 94 (295)
-++|+...|...+.+.|.. ...+..||.-. ..+-.|.+ -.++. .++-+.++++ .+..|-++
T Consensus 41 ~~~W~~~~~~~~~~~~~~~---~~~l~~ly~~t-~~~L~d~~~~f~lLLPdD~~~L~~Ra~AL~~W------~~gFL~G~ 110 (181)
T PRK04758 41 GADWLARILADAGQVAPAQ---GSALDQLRQAT-VAQLEDRDFAFELLLAEDGAPLAARADALFDW------CRAFLGGF 110 (181)
T ss_pred cHHHHHHHHhccCCCchHH---HHHHHHHHHHH-HHHhccCCCeeeeeCCCCCCCHHHHHHHHHHH------HHHHHHHH
Confidence 4689999886324443332 45566665322 22222222 22222 1222333333 46778888
Q ss_pred cccc---cCCChhHHHHHHHHHHHHHHcCCC
Q 022524 95 GLAQ---ESLPSNVVSSAQVLANVANLLNIR 122 (295)
Q Consensus 95 gls~---~sLs~~G~~aL~aLa~~A~~Lg~~ 122 (295)
|+.. ..+|.+.+.+|+.|+++| .+++.
T Consensus 111 Gl~~~~~~~~s~e~~E~L~Dl~~Ia-ql~~d 140 (181)
T PRK04758 111 GLAAQQRPALSEEGEEALQDLARLA-QASSD 140 (181)
T ss_pred HhhccccccCCHHHHHHHHHHHHHH-ccCCC
Confidence 8754 558889999999999999 67765
No 253
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=26.87 E-value=7.6e+02 Score=25.96 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 260 PDKALAALAIEDKKRQYAAAEKYLE 284 (295)
Q Consensus 260 pd~~lAr~kiEear~EL~~Le~~l~ 284 (295)
.....-+.+|+.+++|+..++.-+.
T Consensus 364 ~~~e~~k~~ie~L~~el~~~e~~lq 388 (546)
T PF07888_consen 364 HSAEADKDEIEKLSRELQMLEEHLQ 388 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555556778888888877776663
No 254
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=26.86 E-value=3.1e+02 Score=21.37 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=23.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 130 LVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIAR 167 (295)
Q Consensus 130 ~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~ 167 (295)
-..+.+|......+++.+..+..+.+.|+.|+..-++.
T Consensus 29 Q~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 29 QDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666777777776555443
No 255
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.86 E-value=4.4e+02 Score=23.18 Aligned_cols=31 Identities=6% Similarity=0.107 Sum_probs=2.8
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 022524 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKIL 157 (295)
Q Consensus 127 ~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L 157 (295)
+.+...|++++.++...+........+|..|
T Consensus 91 ~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l 121 (194)
T PF08614_consen 91 GELAQQLVELNDELQELEKELSEKERRLAEL 121 (194)
T ss_dssp -----------------------HHHHHHHH
T ss_pred ccccccccccccccchhhhhHHHHHHHHHHH
Confidence 3344555555555444444433333333333
No 256
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.84 E-value=5.8e+02 Score=24.59 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022524 230 VLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKY 282 (295)
Q Consensus 230 ~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~ 282 (295)
.|.+..+...+++.++..++..++.-+|-- +.+|..+++.+..|+..
T Consensus 240 ~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t------~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 240 KIEDLTNKKSELNTEIAEAEKKLEQCRGFT------FKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHH
Confidence 344455556666666666666665555543 23555666666666554
No 257
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.82 E-value=2.9e+02 Score=21.08 Aligned_cols=39 Identities=8% Similarity=0.127 Sum_probs=25.9
Q ss_pred HHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhh
Q 022524 213 YKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRS 254 (295)
Q Consensus 213 le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~s 254 (295)
++..++..++ .|.+......+-+....+++..|+++|..
T Consensus 37 l~~~l~kldl---VtREEFd~q~~~L~~~r~kl~~LEarl~~ 75 (79)
T PF04380_consen 37 LQSALSKLDL---VTREEFDAQKAVLARTREKLEALEARLAA 75 (79)
T ss_pred HHHHHHHCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777 56777776666666777777777766654
No 258
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=26.72 E-value=6.6e+02 Score=25.15 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=36.3
Q ss_pred HHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHH-------hhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 213 YKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILD-------TLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLED 285 (295)
Q Consensus 213 le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~-------kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~ 285 (295)
...++..+|++ .....|+++.++..++..++..|+. ++.....-..+.+..+.+....++++..++.++..
T Consensus 14 v~~~l~~R~~~--~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 91 (425)
T PRK05431 14 VKEALAKRGFP--LDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDE 91 (425)
T ss_pred HHHHHHhcCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556653 2356677766555555544444444 44332222234444555555666666666655543
No 259
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.68 E-value=4.6e+02 Score=24.72 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhcHhH
Q 022524 229 GVLVEMAEHRKELEKKTKPI 248 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L 248 (295)
+-|..+++++.+|..++..|
T Consensus 239 e~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 239 EDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44444445555555554443
No 260
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.61 E-value=3.2e+02 Score=21.46 Aligned_cols=74 Identities=15% Similarity=0.261 Sum_probs=47.8
Q ss_pred HHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHH-------hhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 212 NYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILD-------TLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLE 284 (295)
Q Consensus 212 ~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~-------kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~ 284 (295)
.+...+..+|. .......|+++.+.+..+..++..|.. ++.....=-.+....+.+....+.++..++.++.
T Consensus 13 ~v~~~l~~R~~-~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~ 91 (108)
T PF02403_consen 13 EVRENLKKRGG-DEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLK 91 (108)
T ss_dssp HHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666763 334667788777666665555555544 4444443336788888888888888888887775
Q ss_pred HH
Q 022524 285 DV 286 (295)
Q Consensus 285 ~~ 286 (295)
..
T Consensus 92 ~~ 93 (108)
T PF02403_consen 92 EL 93 (108)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 261
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.51 E-value=3.8e+02 Score=22.32 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcHhHHHhh
Q 022524 234 MAEHRKELEKKTKPILDTL 252 (295)
Q Consensus 234 ~~e~~~eL~~~~k~L~~kL 252 (295)
..|.+.+|+..+..++.-.
T Consensus 94 K~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 94 KSEEVEELRADVQDLKEMY 112 (120)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3466777777776666543
No 262
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=26.37 E-value=9.5e+02 Score=26.91 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhcHh
Q 022524 229 GVLVEMAEHRKELEKKTKP 247 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~ 247 (295)
+++..+++....|..++..
T Consensus 459 ~s~~~~~~~~~~L~d~le~ 477 (980)
T KOG0980|consen 459 QSIDDVEEENTNLNDQLEE 477 (980)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 263
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=26.22 E-value=7e+02 Score=25.28 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=21.8
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHhhh
Q 022524 190 ENWKTNLAVMASKERQYLQQYNNYKALLNR 219 (295)
Q Consensus 190 ~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~ 219 (295)
+..+|..+|+..-+.|=++|...+|.+|+.
T Consensus 288 e~~krdy~fi~etLQEERyR~erLEEqLNd 317 (455)
T KOG3850|consen 288 EQIKRDYKFIAETLQEERYRYERLEEQLND 317 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455667777777777777777788877663
No 264
>PRK04406 hypothetical protein; Provisional
Probab=26.19 E-value=2e+02 Score=21.92 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=16.4
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHH
Q 022524 191 NWKTNLAVMASKERQYLQQYNNYKA 215 (295)
Q Consensus 191 ~~~r~~k~L~aK~~Ey~~ri~~le~ 215 (295)
..++.+..|..++.-+.+|+..++.
T Consensus 36 ~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 36 QQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455567777777777777765553
No 265
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.03 E-value=6e+02 Score=24.49 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=11.4
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHh
Q 022524 195 NLAVMASKERQYLQQYNNYKALL 217 (295)
Q Consensus 195 ~~k~L~aK~~Ey~~ri~~le~~l 217 (295)
.+.....|..+++..|+.++..+
T Consensus 240 ~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 240 KIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555443
No 266
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.62 E-value=6.6e+02 Score=24.79 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 022524 268 AIEDKKRQYAAAEKY 282 (295)
Q Consensus 268 kiEear~EL~~Le~~ 282 (295)
.|-..|.|...++-+
T Consensus 336 Al~kLk~EI~qMdvr 350 (359)
T PF10498_consen 336 ALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHHHHHHHHHhhhh
Confidence 344444444444433
No 267
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=25.57 E-value=1.9e+02 Score=23.94 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHH-HHHHHHH
Q 022524 235 AEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAA-AEKYLED 285 (295)
Q Consensus 235 ~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~-Le~~l~~ 285 (295)
.+.+....+.+...++.++.|..+|+....-+.-+++...-+.. +..-+..
T Consensus 81 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 132 (171)
T PF02203_consen 81 AELLARAEQNLEQAEQAFDAFKALPHASPEERALADELEASFDAYLQQALDP 132 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS---GTGGHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHHHhHHH
Confidence 34555556677777777888888887764444455555555555 4444333
No 268
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=25.51 E-value=7.6e+02 Score=25.51 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhh
Q 022524 224 PEISHGVLVEMAEHRKELEKKTKPILDTLRSY 255 (295)
Q Consensus 224 ~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy 255 (295)
.+..|+.+.++...-.++..++..|+.+|+..
T Consensus 429 ~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l 460 (489)
T KOG3684|consen 429 QNDMYDLLQELHSRQEELEKQIDTLESKLEAL 460 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777777777777777777654
No 269
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=25.39 E-value=5.1e+02 Score=26.48 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHhh
Q 022524 268 AIEDKKRQYAAAEKYLED---VLHSAL 291 (295)
Q Consensus 268 kiEear~EL~~Le~~l~~---~~~~~~ 291 (295)
-||+.|+|+-.|..+..+ .+|+||
T Consensus 292 ~LEelRrevssLtarw~qEega~qEaL 318 (558)
T PF15358_consen 292 GLEELRREVSSLTARWHQEEGAVQEAL 318 (558)
T ss_pred cHHHHHHHHHHHhhHHHHHHhHHHHHH
Confidence 478999999999887643 466665
No 270
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=25.21 E-value=81 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=16.8
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 022524 253 RSYQDLPPDKALAALAIEDKKRQYAAAE 280 (295)
Q Consensus 253 ~sy~dLPpd~~lAr~kiEear~EL~~Le 280 (295)
+-|.+||.||..|... +++-+.+..
T Consensus 34 ~ls~~Lpadp~qA~~~---~~~rl~s~~ 58 (114)
T PF07511_consen 34 ELSAGLPADPQQAEAQ---ARQRLQSPD 58 (114)
T ss_pred HHhccCCCChHHHHHH---HHHHHcCcc
Confidence 3489999999988774 333344444
No 271
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=25.17 E-value=9e+02 Score=26.23 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHH
Q 022524 126 LSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQ 205 (295)
Q Consensus 126 ~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~E 205 (295)
+.+.|.|+.|+..+...+-++..+-+...-.+..-..+....-..|.+.+..|...+..+.....-....++.|.-+.+-
T Consensus 456 ~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~ 535 (698)
T KOG0978|consen 456 METIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERG 535 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc----CCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524 206 YLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ----DLPPDKALAALAIEDKKRQYAAAEK 281 (295)
Q Consensus 206 y~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~----dLPpd~~lAr~kiEear~EL~~Le~ 281 (295)
+......+...+. .--+.+........++......|..++..++ ++-+...-.+.+|+.-+.-..+++.
T Consensus 536 lt~~~~~l~~el~-------~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleE 608 (698)
T KOG0978|consen 536 LTSNESKLIKELT-------TLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEE 608 (698)
T ss_pred hhHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 022524 282 YLEDV 286 (295)
Q Consensus 282 ~l~~~ 286 (295)
++...
T Consensus 609 E~e~L 613 (698)
T KOG0978|consen 609 ELERL 613 (698)
T ss_pred HHHHH
No 272
>PLN02381 valyl-tRNA synthetase
Probab=24.92 E-value=2e+02 Score=32.48 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=48.2
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCC
Q 022524 194 TNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLP 259 (295)
Q Consensus 194 r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLP 259 (295)
...+-|..++..++..|..++..|+.-|+......+.+....+.+.++..++..++..|..+..|-
T Consensus 997 ~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~~ 1062 (1066)
T PLN02381 997 AELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFFEKESKRLEAET 1062 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345557777888888888888888888886666666666666777788888888877777765543
No 273
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.79 E-value=6.4e+02 Score=24.37 Aligned_cols=26 Identities=8% Similarity=-0.090 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhhhh
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTLRS 254 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL~s 254 (295)
+.|..+++-|..--....-|++++.-
T Consensus 175 eeLqkly~~Y~l~f~nl~yL~~qldd 200 (338)
T KOG3647|consen 175 EELQKLYQRYFLRFHNLDYLKSQLDD 200 (338)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444455555544555555555543
No 274
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=24.76 E-value=1.1e+02 Score=23.48 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=19.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhh
Q 022524 196 LAVMASKERQYLQQYNNYKALLNR 219 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l~~ 219 (295)
.++...|+.||.+|+..++..+..
T Consensus 50 k~~ir~K~~eYl~RAE~Lk~~l~~ 73 (76)
T cd02681 50 LKTIQEKSNEYLDRAQALHQLVQG 73 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455699999999999999887543
No 275
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=24.74 E-value=9.4e+02 Score=26.63 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHH--------------HHhHHHHHh
Q 022524 136 ISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENW--------------KTNLAVMAS 201 (295)
Q Consensus 136 Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~--------------~r~~k~L~a 201 (295)
+-....++.+.=.++..+....++++.+.+.++.+|...+.+++-++...+.--+.| ...++.++.
T Consensus 197 ~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ 276 (966)
T KOG4286|consen 197 LRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRG 276 (966)
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHh
Q ss_pred hHHHHHHHHHH---HHHHhhhcCCCCC-CcHHHHHHHHHHHHHHHHhcHhHHHhhh
Q 022524 202 KERQYLQQYNN---YKALLNRVGYTPE-ISHGVLVEMAEHRKELEKKTKPILDTLR 253 (295)
Q Consensus 202 K~~Ey~~ri~~---le~~l~~~g~~~s-~sh~~l~~~~e~~~eL~~~~k~L~~kL~ 253 (295)
.+.+.++.++. +..+|...++..| ..-+.|..+-..+..|+..+-.=.++|+
T Consensus 277 ei~p~~~~v~~vndla~ql~~~d~~ls~~~~~~le~~n~rwk~Lq~SV~~rl~qlr 332 (966)
T KOG4286|consen 277 EIAPLKENVSHVNDLARQLTTLDIQLSPYNLSTLEDLNTRWKLLQVSVPDRLTQLR 332 (966)
T ss_pred hcchHhhchhhHHHHHHHhhhcccCCChhhHhhHHHHHHHHHHHHHHHHHHHHHHH
No 276
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=24.73 E-value=6.4e+02 Score=24.96 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022524 264 LAALAIEDKKRQYAAAEK 281 (295)
Q Consensus 264 lAr~kiEear~EL~~Le~ 281 (295)
+|..++..++.++..++.
T Consensus 79 ~~~~e~~~l~~~l~~~e~ 96 (359)
T PRK00591 79 MAKEELKELEERLEELEE 96 (359)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 277
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=24.64 E-value=6e+02 Score=24.67 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022524 149 KVQKESKILLDYTRKAIARLTYLKRTLGQLEDD 181 (295)
Q Consensus 149 rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d 181 (295)
.++++-.++|.++..+..++..|...|++++++
T Consensus 13 e~k~e~sAlhqK~~aKtdairiL~QdLEkfe~E 45 (389)
T KOG4687|consen 13 ELKKEFSALHQKCGAKTDAIRILGQDLEKFENE 45 (389)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 344566777888887777778877666666554
No 278
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=24.38 E-value=7.7e+02 Score=25.12 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhhh
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTLR 253 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL~ 253 (295)
..|..+...+..|++++...+.++-
T Consensus 314 PqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 314 PLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777778888888888888874
No 279
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.36 E-value=3.5e+02 Score=25.25 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHH
Q 022524 168 LTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNN 212 (295)
Q Consensus 168 ~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~ 212 (295)
...|..+|..|+.|+..+..++++...++.-+..+.+++-..+..
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555777777777767777778777888888887776555544
No 280
>PF11420 Subtilosin_A: Bacteriocin subtilosin A; InterPro: IPR021539 Subtilosin A is a bacteriocin from Bacillus subtilis.The protein has a cyclized peptide backbone and forms three cross-liks between the sulphurs of Cys13, Cys7 and Cys4 and the alpha-positions of Phe22,Thr28 and Phe31 []. ; PDB: 1PXQ_A.
Probab=24.25 E-value=35 Score=22.13 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=4.2
Q ss_pred CCCCCCCccCh
Q 022524 36 AKEVPAFEYTS 46 (295)
Q Consensus 36 ~~pvP~fErN~ 46 (295)
+.|||.||+-.
T Consensus 16 dgpipdfeia~ 26 (35)
T PF11420_consen 16 DGPIPDFEIAG 26 (35)
T ss_dssp TTT---S--S-
T ss_pred cCCCCcchhhh
Confidence 78999999864
No 281
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.18 E-value=5.3e+02 Score=23.18 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=9.1
Q ss_pred HHHHHhcHhHHHhhhhhc
Q 022524 239 KELEKKTKPILDTLRSYQ 256 (295)
Q Consensus 239 ~eL~~~~k~L~~kL~sy~ 256 (295)
..+++++..++..-..+.
T Consensus 169 er~e~ki~~~ea~aea~~ 186 (219)
T TIGR02977 169 EQYERRVDELEAQAESYD 186 (219)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344444555555555554
No 282
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=24.06 E-value=5.6e+02 Score=28.04 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=27.8
Q ss_pred HHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 022524 240 ELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALATN 294 (295)
Q Consensus 240 eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~~~~~~~ 294 (295)
+|++.+..|+..+.-. |=.||.. -+.-.++|+.|..+++-+|+.++
T Consensus 670 ~LK~k~E~Lk~Evaka-~~~pd~~--------~k~kieal~~qik~~~~~a~~~~ 715 (762)
T PLN03229 670 DLKSKIELLKLEVAKA-SKTPDVT--------EKEKIEALEQQIKQKIAEALNSS 715 (762)
T ss_pred hHHHHHHHHHHHHHhc-CCCCCcc--------hHHHHHHHHHHHHHHHHHHhccH
Confidence 5666666666666333 3344443 23445677788888888887654
No 283
>COG5570 Uncharacterized small protein [Function unknown]
Probab=23.99 E-value=2.9e+02 Score=20.08 Aligned_cols=50 Identities=8% Similarity=0.128 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHh
Q 022524 202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDT 251 (295)
Q Consensus 202 K~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~k 251 (295)
.+.++..+--+++..+...--.|+..-..|+++.-.-..|++++..|+.+
T Consensus 6 hl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 6 HLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444444443333221124445567777776777777777777654
No 284
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=23.96 E-value=6.8e+02 Score=24.35 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhh
Q 022524 139 RKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLN 218 (295)
Q Consensus 139 e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~ 218 (295)
+.-.+.+++..+++.+..=...+++-+..-.- +|.-|..+..-+..+.+.-.++..-|.+.+.-|+.|++++-..
T Consensus 32 diei~Kekn~~Lqk~lKLneE~ltkTi~qy~~---QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d-- 106 (305)
T PF14915_consen 32 DIEILKEKNDDLQKSLKLNEETLTKTIFQYNG---QLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQD-- 106 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh--
Q ss_pred hcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhh--------hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 219 RVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRS--------YQDLPPDKALAALAIEDKKRQYAAAEKYLEDVL 287 (295)
Q Consensus 219 ~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~s--------y~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~ 287 (295)
.+-++.+=..++=.+..-..+--.|..++.+ ..-|..-++.|..++..++-||-....-|+++.
T Consensus 107 -----~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKt 178 (305)
T PF14915_consen 107 -----HDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKT 178 (305)
T ss_pred -----HHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 285
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=23.96 E-value=6.5e+02 Score=24.16 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhh
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTL 252 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL 252 (295)
..|..+.+++..++.+-..+...|
T Consensus 191 ~~Lr~ll~kl~~lk~eR~~l~~~L 214 (337)
T cd09234 191 KELKRILNKVNEMRKQRRSLEQQL 214 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555577777777777776666
No 286
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.95 E-value=1.1e+03 Score=27.01 Aligned_cols=43 Identities=9% Similarity=0.120 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 022524 235 AEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYA 277 (295)
Q Consensus 235 ~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~ 277 (295)
.+.+......++.+..+|.....--.++...+.+|+.+.++|.
T Consensus 446 ~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (1311)
T TIGR00606 446 KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELS 488 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444444444444444444444443
No 287
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=23.84 E-value=5.7e+02 Score=23.45 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=15.1
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHH
Q 022524 194 TNLAVMASKERQYLQQYNNYKAL 216 (295)
Q Consensus 194 r~~k~L~aK~~Ey~~ri~~le~~ 216 (295)
.+...|..+++|...||-++++.
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad 79 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEAD 79 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777666654
No 288
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.82 E-value=1.1e+03 Score=26.91 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=15.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHh
Q 022524 196 LAVMASKERQYLQQYNNYKALL 217 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l 217 (295)
+...+.|..||.++++.++.+|
T Consensus 776 ~~~~a~k~~ef~~q~~~l~~~l 797 (1141)
T KOG0018|consen 776 QQEFAKKRLEFENQKAKLENQL 797 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 4456667777777777777664
No 289
>smart00319 TarH Homologues of the ligand binding domain of Tar. Homologues of the ligand binding domain of the wild-type bacterial aspartate receptor, Tar.
Probab=23.79 E-value=2.8e+02 Score=21.72 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=27.4
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAA 279 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~L 279 (295)
+.+...+..+..-++..+.|..+|+++...+..+.....-+..+
T Consensus 42 ~~~~~a~~~l~~a~~~~~~f~~~p~~~~~~~~l~~~l~~~~~~~ 85 (135)
T smart00319 42 KLMTAASESLKQAEKNYKSYENMTALPRADRALDAELKEKFQQY 85 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcCCCcccHHHHHHHHHHHHHH
Confidence 34444556677888899999999987765543333444334333
No 290
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=23.73 E-value=86 Score=21.24 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=14.1
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 022524 226 ISHGVLVEMAEHRKELEK 243 (295)
Q Consensus 226 ~sh~~l~~~~e~~~eL~~ 243 (295)
.+|..+++.++++..|.-
T Consensus 22 l~~~~vl~~Sq~LD~lI~ 39 (45)
T PF09388_consen 22 LTDPEVLELSQELDKLIN 39 (45)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 488999999988777653
No 291
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.71 E-value=6.9e+02 Score=24.39 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=14.6
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHhh
Q 022524 195 NLAVMASKERQYLQQYNNYKALLN 218 (295)
Q Consensus 195 ~~k~L~aK~~Ey~~ri~~le~~l~ 218 (295)
.++.|..|+.|.+-.|..+...++
T Consensus 87 Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 87 EVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHH
Confidence 345566666666666666665554
No 292
>PRK15396 murein lipoprotein; Provisional
Probab=23.65 E-value=2.1e+02 Score=22.19 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSA 290 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~~~ 290 (295)
..+.+++.++..|..++..+.. |..-+|..+..|+.|-.+.-.+++..+++.
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~----------dv~~~~~~~~~a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSN----------DVNAMRSDVQAAKDDAARANQRLDNQATKY 76 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666666666666555554 567788888899999999999998888763
No 293
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=23.63 E-value=6e+02 Score=23.67 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=39.0
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhh-----------hhcC--CCCCHHHH
Q 022524 199 MASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLR-----------SYQD--LPPDKALA 265 (295)
Q Consensus 199 L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~-----------sy~d--LPpd~~lA 265 (295)
.++.+...+.....++. |...|+ ++...+.+....+...+..+..++..+. .... -.-+...+
T Consensus 109 ~~~~l~~a~~~~~R~~~-L~~~g~---iS~~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (327)
T TIGR02971 109 LEAELETAQREVDRYRS-LFRDGA---VSASDLDSKALKLRTAEEELEEALASRSEQIDGARAALASLAEEVRETDVDLA 184 (327)
T ss_pred HHHHHHHHHHHHHHHHH-HHHcCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHH
Confidence 33333333333334433 555666 5666666665555555555544444433 1110 01334555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022524 266 ALAIEDKKRQYAAAEKYLE 284 (295)
Q Consensus 266 r~kiEear~EL~~Le~~l~ 284 (295)
+..+..++..|.....++.
T Consensus 185 ~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 185 QAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555443
No 294
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.59 E-value=3.1e+02 Score=20.25 Aligned_cols=14 Identities=7% Similarity=-0.002 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 022524 159 DYTRKAIARLTYLK 172 (295)
Q Consensus 159 ~~l~k~l~~~~~L~ 172 (295)
+.|..+|-+-..+.
T Consensus 4 saL~~EirakQ~~~ 17 (61)
T PF08826_consen 4 SALEAEIRAKQAIQ 17 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 33344444434433
No 295
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=23.51 E-value=4.9e+02 Score=22.52 Aligned_cols=78 Identities=12% Similarity=0.127 Sum_probs=41.5
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 022524 199 MASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAA 278 (295)
Q Consensus 199 L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~ 278 (295)
...++.++-+|+..++.. .+|| +|.-.|--.-=.+..-..+..|++.+|+.|..-|-+-...-+.++.....|..
T Consensus 64 ~~~~Lq~L~~rL~~le~~--rg~Y---~TiSeLKT~vy~i~q~l~~~~P~Ee~Lrql~~~~~~~~~~~a~l~qi~~~l~~ 138 (148)
T PF12486_consen 64 GMTQLQQLADRLNQLEEQ--RGKY---MTISELKTAVYQIQQSLNQSVPLEEQLRQLQQQKEQGQPPSALLKQIDNRLNQ 138 (148)
T ss_pred HHHHHHHHHHHHHHHHHh--cCCc---eeHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 345667777777777754 3343 23333322221122222677999999999998775533222333333344444
Q ss_pred HHH
Q 022524 279 AEK 281 (295)
Q Consensus 279 Le~ 281 (295)
|-.
T Consensus 139 Ll~ 141 (148)
T PF12486_consen 139 LLS 141 (148)
T ss_pred HHH
Confidence 433
No 296
>PRK00846 hypothetical protein; Provisional
Probab=23.16 E-value=2.9e+02 Score=21.37 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=18.7
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHh
Q 022524 191 NWKTNLAVMASKERQYLQQYNNYKALL 217 (295)
Q Consensus 191 ~~~r~~k~L~aK~~Ey~~ri~~le~~l 217 (295)
..++.+..|..++.-+.+|+...+.+.
T Consensus 38 ~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 38 DARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 445567777777777777877777554
No 297
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=23.13 E-value=8.3e+02 Score=25.09 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHH
Q 022524 134 GDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNY 213 (295)
Q Consensus 134 ~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~l 213 (295)
++|+..+..+.+.--.++..++.-+..+..++.+ .+.+|+ ..+..-+.+++-|..-.=++...+
T Consensus 132 n~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~------ki~Kle-------n~t~~kq~~leQLRre~V~lentl--- 195 (552)
T KOG2129|consen 132 NPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMN------KIRKLE-------NKTLLKQNTLEQLRREAVQLENTL--- 195 (552)
T ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHH------HHHHhh-------hhhHHhhhhHHHHHHHHHHHhhHH---
Q ss_pred HHHhhhcCCCCCCcHHHHHHHH-HHHHHHHHhcHhHHHhhhhhc---CCCCCHH------------------HHHHHHHH
Q 022524 214 KALLNRVGYTPEISHGVLVEMA-EHRKELEKKTKPILDTLRSYQ---DLPPDKA------------------LAALAIED 271 (295)
Q Consensus 214 e~~l~~~g~~~s~sh~~l~~~~-e~~~eL~~~~k~L~~kL~sy~---dLPpd~~------------------lAr~kiEe 271 (295)
.+ -.+.|+.-- +....|..++.-|.+|+..=- .+|-|+. .-|.+||+
T Consensus 196 -EQ----------EqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveR 264 (552)
T KOG2129|consen 196 -EQ----------EQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVER 264 (552)
T ss_pred -HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 022524 272 KKRQYAAAEKYLEDVLHSALA 292 (295)
Q Consensus 272 ar~EL~~Le~~l~~~~~~~~~ 292 (295)
+|..|.+...+...+++..+.
T Consensus 265 lrt~l~~Aqk~~~ek~~qy~~ 285 (552)
T KOG2129|consen 265 LRTYLSRAQKSYQEKLMQYRA 285 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 298
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=22.77 E-value=5.9e+02 Score=23.25 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022524 268 AIEDKKRQYAAAEKYLEDVLH 288 (295)
Q Consensus 268 kiEear~EL~~Le~~l~~~~~ 288 (295)
.+..+++++++|..+|....|
T Consensus 132 ~~~~l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 132 ELGSLRREVERLRAELQRERQ 152 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 377788999999888876544
No 299
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=22.64 E-value=6e+02 Score=23.27 Aligned_cols=142 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcC
Q 022524 142 AVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVG 221 (295)
Q Consensus 142 ~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g 221 (295)
+.+-....++++|..+..-+.+.-.++..+...|.+..... .+--|.+|.|..+.-....++..++.+|....
T Consensus 1 ~ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~-------dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk 73 (205)
T KOG1003|consen 1 KAEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAA-------DESERGMKVIENRAQKLEEKMEAQEAQLKEAK 73 (205)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred CCCC--------------CcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 222 YTPE--------------ISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVL 287 (295)
Q Consensus 222 ~~~s--------------~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~ 287 (295)
+-.. +.-..|...++..-.-..++..|...++-...=-.+++..--+++.-...|...-..+..++
T Consensus 74 ~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKL 153 (205)
T KOG1003|consen 74 HIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKL 153 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q ss_pred HHh
Q 022524 288 HSA 290 (295)
Q Consensus 288 ~~~ 290 (295)
-.|
T Consensus 154 kEa 156 (205)
T KOG1003|consen 154 KEA 156 (205)
T ss_pred hhh
No 300
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=22.61 E-value=3.1e+02 Score=19.94 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=12.5
Q ss_pred HHhhHHHHHHHHHHHHHHhh
Q 022524 199 MASKERQYLQQYNNYKALLN 218 (295)
Q Consensus 199 L~aK~~Ey~~ri~~le~~l~ 218 (295)
=+.|..+|...+..+...|.
T Consensus 44 er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 44 EREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566677777766666544
No 301
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.61 E-value=3.7e+02 Score=20.79 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhcC
Q 022524 206 YLQQYNNYKALLNRVG 221 (295)
Q Consensus 206 y~~ri~~le~~l~~~g 221 (295)
|.+.|+.+...|..+|
T Consensus 62 YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 62 YEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHhhC
Confidence 5566666665555544
No 302
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=22.50 E-value=4.2e+02 Score=21.44 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=38.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCCC--CCCcH----HHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHH
Q 022524 197 AVMASKERQYLQQYNNYKALLNRVGYT--PEISH----GVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIE 270 (295)
Q Consensus 197 k~L~aK~~Ey~~ri~~le~~l~~~g~~--~s~sh----~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiE 270 (295)
..|++.+.-+-.|+ .+.+++|-. .+.+. ++|-.|--.+.....+..+.....+.+|| .+. .|.
T Consensus 5 ~~l~~~v~if~nRm----ksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQd---kL~----qi~ 73 (96)
T PF12210_consen 5 NTLRSSVEIFVNRM----KSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQD---KLA----QIK 73 (96)
T ss_dssp HHHHHHHHHHHHHH----HHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHH
T ss_pred HHHHHHHHHHHHHH----HHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHH
Confidence 34667777788888 445555652 11121 22222222333333333333333333332 222 455
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022524 271 DKKRQYAAAEKYLEDVLH 288 (295)
Q Consensus 271 ear~EL~~Le~~l~~~~~ 288 (295)
+||.=|+.|..+..++++
T Consensus 74 eAR~AlDalR~eH~~klr 91 (96)
T PF12210_consen 74 EARAALDALREEHREKLR 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777766655
No 303
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=22.46 E-value=1.2e+02 Score=23.36 Aligned_cols=22 Identities=5% Similarity=0.010 Sum_probs=19.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHh
Q 022524 196 LAVMASKERQYLQQYNNYKALL 217 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l 217 (295)
..++..|+.||.+|+..+++..
T Consensus 49 k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 49 RLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 5678999999999999998864
No 304
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.34 E-value=55 Score=26.50 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=13.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhh
Q 022524 220 VGYTPEISHGVLVEMAEHRKELEKKTKPILDTL 252 (295)
Q Consensus 220 ~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL 252 (295)
+||++.=...-|..+...|..|..+...|+.++
T Consensus 16 rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~ 48 (131)
T PF05103_consen 16 RGYDPDEVDDFLDELAEELERLQRENAELKEEI 48 (131)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355544333334444433444433333333333
No 305
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=22.15 E-value=8.5e+02 Score=27.36 Aligned_cols=112 Identities=20% Similarity=0.148 Sum_probs=66.9
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhcccCCCCCCCCccChHHHHHHHHHHHhhHhhhHHHhHHHHHHHHHHHHHhhhHHHH
Q 022524 8 IDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARI 87 (295)
Q Consensus 8 ~~~~~~~~~~~~~~s~V~sWL~~~f~~~~~pvP~fErN~~Tl~~L~~La~~neaaD~e~~Ll~~d~~~~~~ey~~ea~~l 87 (295)
|+--++--.|-+ .+-.||.=.|+ +.+ |. =+++.|+++|..|+...=--.+|...+.++..--. ++
T Consensus 882 lK~g~GGLrDIe---f~~q~l~L~~~-~~~--p~-~~~~~t~~~L~~L~~~g~l~~~e~~~L~~Ay~fL~--------~l 946 (1007)
T PRK14109 882 TKLGRGGLSDVE---WTVQLLQLQHA-HEV--PA-LRTTSTLEALDAAAAAGLLSEEDAELLREAWLLAT--------RA 946 (1007)
T ss_pred CCcCCCchhhHH---HHHHHHHHHhC-CCC--cc-ccCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--------HH
Confidence 333344444544 45555555564 233 54 57789999999999998888888888766444321 22
Q ss_pred HHHHH-hccccccCCChhHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhH
Q 022524 88 REILE-NVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISL 138 (295)
Q Consensus 88 ~~lLe-~lgls~~sLs~~G~~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~ 138 (295)
+..|. ..|-..+.||.+. ..+..+|..+|..+.++..|+..+.....
T Consensus 947 r~~L~l~~~r~~d~L~~~~----q~l~~lA~~lG~~~~~~~~~m~~~~~~~~ 994 (1007)
T PRK14109 947 RNALVLVRGRPTDQLPGDG----RDLAAVARALGYPPGDGGEFLDDYLRVTR 994 (1007)
T ss_pred HHHHHHhcCCCCCcCCCCH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 33222 2232356777554 44667777899888776555555444443
No 306
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.93 E-value=9.3e+02 Score=25.22 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=43.3
Q ss_pred HHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhH
Q 022524 169 TYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPI 248 (295)
Q Consensus 169 ~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L 248 (295)
..+++.+++++..-.+.+.........++.|+...+.-++.|.++...++ ....++...+.+++...+.=
T Consensus 194 ~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~----------~~~~~~~~~~~~lk~ap~~D 263 (555)
T TIGR03545 194 EEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQ----------NDKKQLKADLAELKKAPQND 263 (555)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHhccHhH
Confidence 33444555554432222333333344555566666666666666555433 34445556666777666666
Q ss_pred HHhhhhhcCCCC
Q 022524 249 LDTLRSYQDLPP 260 (295)
Q Consensus 249 ~~kL~sy~dLPp 260 (295)
-++|+.+-++++
T Consensus 264 ~~~L~~~~~~~~ 275 (555)
T TIGR03545 264 LKRLENKYAIKS 275 (555)
T ss_pred HHHHHHHhCCCc
Confidence 666666666543
No 307
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=21.79 E-value=3.8e+02 Score=22.11 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=17.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 022524 257 DLPPDKALAALAIEDKKRQYAA 278 (295)
Q Consensus 257 dLPpd~~lAr~kiEear~EL~~ 278 (295)
|=|..+..-+.||.+++.||..
T Consensus 93 G~~~KI~K~~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 93 GDSDKIAKRQKKLAEAKAELKE 114 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHhh
Confidence 5557788888889999988863
No 308
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.62 E-value=5.8e+02 Score=22.72 Aligned_cols=30 Identities=7% Similarity=0.194 Sum_probs=20.1
Q ss_pred hhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 022524 187 AQMENWKTNLAVMASKERQYLQQYNNYKAL 216 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~ 216 (295)
..++..+++.|.|+.|...+..++..++.+
T Consensus 137 ~~le~~~~~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 137 QRLEEIQSKSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777777666553
No 309
>PRK14127 cell division protein GpsB; Provisional
Probab=21.53 E-value=90 Score=25.71 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhhhhhc
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTLRSYQ 256 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL~sy~ 256 (295)
..+..+.+++..|++++..+..++..+.
T Consensus 44 ~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 44 KEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3445555556666666666666666553
No 310
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.47 E-value=1.4e+03 Score=26.95 Aligned_cols=38 Identities=34% Similarity=0.385 Sum_probs=21.1
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 252 LRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHS 289 (295)
Q Consensus 252 L~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~~ 289 (295)
|+-..||---..--...|+....||..|+++++.+++-
T Consensus 1709 l~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1709 LDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33334443333334455666667777777777766554
No 311
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=21.36 E-value=5.9e+02 Score=25.46 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=14.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 022524 130 LVAMGDISLRKTAVEEKRAKVQKESKIL 157 (295)
Q Consensus 130 ~~ai~~Lt~e~~~~e~~~~rl~~~i~~L 157 (295)
...|+.+..+.-++..+...++.+...+
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~ 54 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNAL 54 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666555555555444444444
No 312
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.14 E-value=1e+03 Score=25.48 Aligned_cols=155 Identities=15% Similarity=0.185 Sum_probs=84.8
Q ss_pred ChhHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHhhh
Q 022524 102 PSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAK-VQKES--KILLDYTRKAIARLTYLKRTLGQL 178 (295)
Q Consensus 102 s~~G~~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~r-l~~~i--~~L~~~l~k~l~~~~~L~~~L~~L 178 (295)
+++|..-|. -.+..+|+...-+.-....++..|+.-.++-+...+| +.-.+ ..|+.+ ..=+.....+.+.+..+
T Consensus 7 ~~~~~~~lr--~K~~kiL~~~~~~dkd~~~aL~~ls~~~~eN~~~~RRnLr~~iE~~~l~iN-~e~l~ef~~i~~~l~~v 83 (655)
T KOG3758|consen 7 SPEELTRLR--NKLSKILNNRTYSDKDALAALRALSTFFEENSLRARRNLRSDIESRLLKIN-EEFLKEFKEIKRRLDRV 83 (655)
T ss_pred CchhhHHHH--HHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 445555555 5667778877777778888888888766655443332 11111 111111 00011112222233333
Q ss_pred hhccc--------------cchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHH------HHHH
Q 022524 179 EDDVA--------------PCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEM------AEHR 238 (295)
Q Consensus 179 ~~d~~--------------~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~------~e~~ 238 (295)
.+++. .-.+.+....+.+..|+.|...+..|......-+..-.. +...+..+ .+.+
T Consensus 84 ~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqL----s~~E~~~L~~~g~i~e~F 159 (655)
T KOG3758|consen 84 SEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQL----SSEELDLLTESGPIDEDF 159 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----ChHHHHHHhcCCcchHHH
Confidence 33332 112444455666777777777776666655554443333 33333333 3677
Q ss_pred HHHHHhcHhHHHhhhhhcCCCCCHH
Q 022524 239 KELEKKTKPILDTLRSYQDLPPDKA 263 (295)
Q Consensus 239 ~eL~~~~k~L~~kL~sy~dLPpd~~ 263 (295)
-....+++.+..--+...-.|.-.+
T Consensus 160 F~vL~rvqeIh~~~~~Ll~~~~~~A 184 (655)
T KOG3758|consen 160 FKVLDRVQEIHDNCRLLLQTPNQTA 184 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhh
Confidence 7888889999888888877777433
No 313
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.94 E-value=4.9e+02 Score=22.07 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=4.6
Q ss_pred HhHHHhhhhhcCC
Q 022524 246 KPILDTLRSYQDL 258 (295)
Q Consensus 246 k~L~~kL~sy~dL 258 (295)
..+........|+
T Consensus 136 ~s~~~n~~~l~~~ 148 (160)
T PF13094_consen 136 ESMQNNLQQLKGL 148 (160)
T ss_pred HHHHccHHHHHHH
Confidence 3333333333333
No 314
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=20.92 E-value=6.3e+02 Score=22.83 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=42.7
Q ss_pred HhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhh-hcCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 216 LLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRS-YQDLP----PDKALAALAIEDKKRQYAAAEKYLEDVL 287 (295)
Q Consensus 216 ~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~s-y~dLP----pd~~lAr~kiEear~EL~~Le~~l~~~~ 287 (295)
.|...++ .||..|...++-+..|..++..++.++.- |.-|- .+|. -++.+-..+.-+++|+...++.+
T Consensus 62 YLe~lNl---PSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~-~~~~v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 62 YLEQVNV---PTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPA-LKKDVTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred HHHhCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch-HHhHHHHHHHHHHHHHHHHHHHH
Confidence 3555666 47788888888888888888888777776 66555 3433 23344455555555555554443
No 315
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=20.89 E-value=7.5e+02 Score=23.76 Aligned_cols=182 Identities=10% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHhccccccCCChhHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 022524 87 IREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAK--VQKESKILLDYTRKA 164 (295)
Q Consensus 87 l~~lLe~lgls~~sLs~~G~~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~r--l~~~i~~L~~~l~k~ 164 (295)
+.+-+..+..|+.+|-..-..+-+-=.-+.+.|..+.-.+..+..+|-+|-....-.--+.++ +.--|..+...+.++
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~e 185 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGE 185 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhccccchhhHHHH-----HHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHH----
Q 022524 165 IARLTYLKRTLGQLEDDVAPCEAQMENW-----KTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMA---- 235 (295)
Q Consensus 165 l~~~~~L~~~L~~L~~d~~~~~~~~~~~-----~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~---- 235 (295)
+..+.. .|+++++++ .-| ..+-|+|-+|++-++..-..+-.+.+..-+ ..+-.+--++.+
T Consensus 186 le~tk~---Klee~Qnel-------sAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gri-a~Le~eLAmQKs~seE 254 (330)
T KOG2991|consen 186 LEQTKD---KLEEAQNEL-------SAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRI-AELEIELAMQKSQSEE 254 (330)
T ss_pred HHHHHH---HHHHHHhhh-------heeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccH-HHHHHHHHHHHhhHHH
Q ss_pred --HHHHHHHHhcHhHHHhhhhhcC----CCCCHHHHHHHHHHHHHHHHHH
Q 022524 236 --EHRKELEKKTKPILDTLRSYQD----LPPDKALAALAIEDKKRQYAAA 279 (295)
Q Consensus 236 --e~~~eL~~~~k~L~~kL~sy~d----LPpd~~lAr~kiEear~EL~~L 279 (295)
....+|-.-+..|+..|+..+. |-.-+..-|-+|+..++++..+
T Consensus 255 lkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~ 304 (330)
T KOG2991|consen 255 LKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQV 304 (330)
T ss_pred HHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 316
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.82 E-value=4.7e+02 Score=24.62 Aligned_cols=26 Identities=4% Similarity=0.077 Sum_probs=17.4
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHH
Q 022524 191 NWKTNLAVMASKERQYLQQYNNYKAL 216 (295)
Q Consensus 191 ~~~r~~k~L~aK~~Ey~~ri~~le~~ 216 (295)
.......-+.++..+.++|++.++.-
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777788888888777753
No 317
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=20.76 E-value=81 Score=25.08 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=17.0
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 022524 251 TLRSYQDLPPDKALAALAIEDKKRQYAA 278 (295)
Q Consensus 251 kL~sy~dLPpd~~lAr~kiEear~EL~~ 278 (295)
.|-.|.|=|-.-..=+.+|++||++|++
T Consensus 59 ~v~tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 59 GVATFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666555556666666666654
No 318
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.72 E-value=5.4e+02 Score=22.04 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=16.0
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHH
Q 022524 193 KTNLAVMASKERQYLQQYNNYKAL 216 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey~~ri~~le~~ 216 (295)
....+.|...+.+.+.||..++..
T Consensus 79 ~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 79 RSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777777764
No 319
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.55 E-value=6.2e+02 Score=23.56 Aligned_cols=64 Identities=3% Similarity=0.099 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 207 LQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 207 ~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~ 286 (295)
.+|+..++..+...+ +.+.++...+..|+.++..|.++++. -..+|+..++.-+.+-.++++.
T Consensus 39 ~~r~~~le~~~~~~~-------~~~~~l~~ql~~lq~ev~~LrG~~E~----------~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 39 EDRVTQLERISNAHS-------QLLTQLQQQLSDNQSDIDSLRGQIQE----------NQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777655333 35667777777777777777777654 3344555555444444444444
Q ss_pred H
Q 022524 287 L 287 (295)
Q Consensus 287 ~ 287 (295)
+
T Consensus 102 ~ 102 (263)
T PRK10803 102 S 102 (263)
T ss_pred H
Confidence 3
No 320
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=20.52 E-value=6e+02 Score=22.45 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 022524 168 LTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKAL 216 (295)
Q Consensus 168 ~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~ 216 (295)
+..|.+.++.+.+++.. =+.-.+.|.|.-|.+++.-+..+|+..+..
T Consensus 101 i~eLe~~l~~kad~vvs--Yqll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 101 LDELERQLQQKADDVVS--YQLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHhhhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455555555422 344466788888888888888888887754
No 321
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=20.42 E-value=1.2e+02 Score=29.63 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=11.2
Q ss_pred chhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHH
Q 022524 125 ELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKER 204 (295)
Q Consensus 125 s~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~ 204 (295)
+.+.+-..|.+|+.++.++.-....+.-.+..|... +.. ++..+..+..++..+.........-+--|...+.
T Consensus 50 SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsst----V~~---lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~ 122 (326)
T PF04582_consen 50 SVSSLSSTISDLSSDLQDLASSLADMTSELNSLSST----VTS---LQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVS 122 (326)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhh
Confidence 344444555555555555554444333333333222 222 1113333333332222222333334445555555
Q ss_pred HHHHHHHHHHHHhh
Q 022524 205 QYLQQYNNYKALLN 218 (295)
Q Consensus 205 Ey~~ri~~le~~l~ 218 (295)
...-.|.+++...+
T Consensus 123 ~lsTdvsNLksdVS 136 (326)
T PF04582_consen 123 ALSTDVSNLKSDVS 136 (326)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhh
Confidence 55566666666543
No 322
>PLN02678 seryl-tRNA synthetase
Probab=20.20 E-value=6.3e+02 Score=25.70 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhh
Q 022524 139 RKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLN 218 (295)
Q Consensus 139 e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~ 218 (295)
++..+.++.+.+..+++.| +.+...+.. ++..+...- .........++.|+.++.++...+..++..+.
T Consensus 34 ~il~ld~~~r~l~~~~e~l----r~erN~~sk---~I~~~k~~~----~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSL----RKEFNKLNK---EVAKLKIAK----EDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHhhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h--cCCCCCCcHHHH
Q 022524 219 R--VGYTPEISHGVL 231 (295)
Q Consensus 219 ~--~g~~~s~sh~~l 231 (295)
. ..+ |.+.|+.+
T Consensus 103 ~~~~~i-PNi~~~~V 116 (448)
T PLN02678 103 AKLKTI-GNLVHDSV 116 (448)
T ss_pred HHHHhC-CCCCCccC
No 323
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=20.13 E-value=2.6e+02 Score=26.15 Aligned_cols=94 Identities=9% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 022524 199 MASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAA 278 (295)
Q Consensus 199 L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~ 278 (295)
+...+...+.++..++.++........-....+......+...+.+....+..++.|+.|=..=.-.+..++.++.+|..
T Consensus 78 ~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~~~ 157 (334)
T TIGR00998 78 AELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKALLS 157 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhh
Q 022524 279 AEKYLEDVLHSALA 292 (295)
Q Consensus 279 Le~~l~~~~~~~~~ 292 (295)
...++....+..+.
T Consensus 158 a~~~l~~~~~~~~~ 171 (334)
T TIGR00998 158 AKAALNAAIQEQLN 171 (334)
T ss_pred HHHHHHHHHHHHHH
Done!