Query 022524
Match_columns 295
No_of_seqs 93 out of 106
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 06:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 94.5 0.85 2.9E-05 40.9 14.1 29 191-219 57-85 (256)
2 1i84_S Smooth muscle myosin he 91.7 0.13 4.5E-06 55.7 4.8 8 24-31 828-835 (1184)
3 2v71_A Nuclear distribution pr 91.6 1.8 6.1E-05 37.7 11.0 145 131-285 24-179 (189)
4 3ghg_A Fibrinogen alpha chain; 88.5 6.2 0.00021 39.3 13.1 91 127-217 60-154 (562)
5 3na7_A HP0958; flagellar bioge 87.8 14 0.00049 32.7 18.4 38 107-148 5-42 (256)
6 1i84_S Smooth muscle myosin he 87.0 3 0.0001 45.2 10.8 7 24-30 752-758 (1184)
7 3oja_B Anopheles plasmodium-re 85.2 17 0.00059 35.3 14.5 52 228-289 529-580 (597)
8 1deq_A Fibrinogen (alpha chain 83.9 17 0.00059 34.7 13.1 91 127-217 63-157 (390)
9 3oja_B Anopheles plasmodium-re 83.0 36 0.0012 33.0 17.4 28 236-263 558-586 (597)
10 3u1c_A Tropomyosin alpha-1 cha 78.6 21 0.00071 27.6 11.2 78 194-281 9-86 (101)
11 3hnw_A Uncharacterized protein 78.5 17 0.00059 29.7 9.9 71 134-218 64-134 (138)
12 3o0z_A RHO-associated protein 75.1 16 0.00055 31.1 8.9 30 148-177 9-38 (168)
13 3tnu_A Keratin, type I cytoske 74.5 25 0.00087 28.1 9.7 50 202-258 78-127 (131)
14 3vkg_A Dynein heavy chain, cyt 74.1 91 0.0031 37.7 17.6 14 123-136 1891-1904(3245)
15 3u59_A Tropomyosin beta chain; 70.6 33 0.0011 26.2 11.2 76 195-280 10-85 (101)
16 1deq_A Fibrinogen (alpha chain 70.4 58 0.002 31.1 12.4 38 149-186 117-154 (390)
17 2pms_C Pneumococcal surface pr 68.6 46 0.0016 27.0 10.9 88 198-287 10-123 (125)
18 2lw1_A ABC transporter ATP-bin 68.0 25 0.00085 26.3 7.8 60 193-253 21-80 (89)
19 3ok8_A Brain-specific angiogen 66.0 52 0.0018 29.1 10.6 41 99-140 44-84 (222)
20 2dfs_A Myosin-5A; myosin-V, in 65.3 30 0.001 37.3 10.5 7 24-30 728-734 (1080)
21 2v71_A Nuclear distribution pr 63.9 72 0.0025 27.5 18.1 23 231-253 90-112 (189)
22 1m1j_B Fibrinogen beta chain; 61.4 1.1E+02 0.0039 29.8 12.9 22 194-215 168-189 (464)
23 1m1j_A Fibrinogen alpha subuni 60.8 70 0.0024 31.4 11.1 90 128-217 62-155 (491)
24 1zhc_A Hypothetical protein HP 59.8 27 0.00091 25.6 6.4 65 204-290 3-67 (76)
25 2w9y_A CE-FAR-7, fatty acid/re 57.3 37 0.0013 28.0 7.4 66 196-262 52-127 (140)
26 1g6u_A Domain swapped dimer; d 56.0 32 0.0011 22.6 5.4 36 217-256 12-47 (48)
27 3t98_B Nucleoporin NUP58/NUP45 54.5 26 0.0009 26.9 5.7 59 193-251 11-80 (93)
28 3tnu_B Keratin, type II cytosk 54.3 79 0.0027 25.0 12.2 50 202-258 76-125 (129)
29 1ugo_A BCL2-associated athanog 54.3 20 0.0007 27.9 5.1 56 220-280 6-61 (99)
30 2xv5_A Lamin-A/C; structural p 51.8 42 0.0014 24.6 6.2 50 200-256 4-53 (74)
31 2ykt_A Brain-specific angiogen 51.4 1.3E+02 0.0045 26.7 14.8 37 101-138 48-84 (253)
32 3mq7_A Bone marrow stromal ant 50.1 97 0.0033 24.8 11.7 18 153-170 22-39 (121)
33 3mq9_A Bone marrow stromal ant 47.8 1.8E+02 0.0062 27.2 12.7 22 196-217 399-420 (471)
34 3d5a_X RF1, peptide chain rele 47.2 1.2E+02 0.004 28.7 10.1 25 261-285 67-94 (354)
35 3mq9_A Bone marrow stromal ant 46.1 40 0.0014 31.9 6.9 18 193-210 403-420 (471)
36 3s84_A Apolipoprotein A-IV; fo 45.9 1.7E+02 0.0057 26.3 14.2 123 142-287 12-141 (273)
37 2a3d_A Protein (de novo three- 44.7 81 0.0028 22.3 6.8 63 204-284 5-68 (73)
38 1x8y_A Lamin A/C; structural p 43.7 71 0.0024 23.7 6.6 52 200-258 27-78 (86)
39 1nfn_A Apolipoprotein E3; lipi 42.0 1.3E+02 0.0044 25.5 8.9 6 258-263 126-131 (191)
40 3mov_A Lamin-B1; LMNB1, B-type 41.1 85 0.0029 23.9 6.8 53 199-258 35-87 (95)
41 3vkg_A Dynein heavy chain, cyt 40.9 5.7E+02 0.02 31.1 22.5 46 230-285 2043-2088(3245)
42 2b9c_A Striated-muscle alpha t 40.0 1.5E+02 0.0053 24.2 10.2 59 187-253 31-90 (147)
43 2eqb_B RAB guanine nucleotide 39.2 1.3E+02 0.0045 23.2 10.1 48 135-182 9-56 (97)
44 3r2p_A Apolipoprotein A-I; amp 38.6 1.7E+02 0.0058 24.3 13.0 22 101-122 23-46 (185)
45 1m1j_A Fibrinogen alpha subuni 37.1 3E+02 0.01 27.0 11.3 37 149-185 115-151 (491)
46 2efr_A General control protein 36.1 1.9E+02 0.0064 24.1 13.2 24 192-215 75-98 (155)
47 1ik9_A DNA repair protein XRCC 34.7 2.3E+02 0.0077 24.6 11.0 13 200-212 188-200 (213)
48 2qyw_A Vesicle transport throu 33.8 1.6E+02 0.0053 22.5 7.5 20 198-217 82-101 (102)
49 1ses_A Seryl-tRNA synthetase; 33.8 1.7E+02 0.0059 27.8 9.2 73 211-285 12-89 (421)
50 3nmd_A CGMP dependent protein 33.8 79 0.0027 23.2 5.2 28 230-257 41-68 (72)
51 2qyw_A Vesicle transport throu 33.7 1.6E+02 0.0054 22.5 7.8 52 229-283 49-101 (102)
52 3qh9_A Liprin-beta-2; coiled-c 33.6 1.5E+02 0.0051 22.2 8.0 61 187-254 19-79 (81)
53 1gk4_A Vimentin; intermediate 33.6 70 0.0024 23.6 5.1 50 202-258 27-76 (84)
54 3tul_A Cell invasion protein S 33.2 2.1E+02 0.0072 23.8 11.7 52 235-286 75-126 (158)
55 3twe_A Alpha4H; unknown functi 32.9 40 0.0014 19.7 2.7 22 233-254 5-26 (27)
56 3u1c_A Tropomyosin alpha-1 cha 32.5 1.6E+02 0.0056 22.3 12.1 62 153-214 10-71 (101)
57 2b9c_A Striated-muscle alpha t 32.1 2.1E+02 0.0071 23.4 13.4 97 142-252 28-124 (147)
58 1l8d_A DNA double-strand break 31.9 1.6E+02 0.0056 22.1 11.1 62 153-214 18-84 (112)
59 1go4_E MAD1 (mitotic arrest de 31.7 1.8E+02 0.0061 22.5 8.8 64 193-256 18-95 (100)
60 1vcs_A Vesicle transport throu 31.5 1.7E+02 0.0058 22.2 10.4 60 227-289 36-96 (102)
61 3hnw_A Uncharacterized protein 30.9 2.1E+02 0.0072 23.1 9.6 51 129-179 66-116 (138)
62 1pxq_A Subtilisin A; thioether 29.4 21 0.00073 22.1 1.2 10 36-45 16-25 (35)
63 3zwl_E Eukaryotic translation 29.0 61 0.0021 22.1 3.6 30 234-263 20-49 (50)
64 1gk6_A Vimentin; intermediate 28.8 73 0.0025 22.0 4.2 48 204-258 3-50 (59)
65 1vcs_A Vesicle transport throu 28.0 2E+02 0.0068 21.8 7.3 22 198-219 71-92 (102)
66 1m62_A BAG-family molecular ch 27.9 1.3E+02 0.0043 22.8 5.6 40 239-279 14-53 (87)
67 2yy0_A C-MYC-binding protein; 26.8 73 0.0025 21.8 3.8 28 260-287 19-46 (53)
68 2p4v_A Transcription elongatio 26.6 2.6E+02 0.009 22.8 8.8 58 226-288 6-67 (158)
69 1uk5_A BAG-family molecular ch 26.6 1.6E+02 0.0054 23.3 6.2 36 224-263 22-57 (111)
70 1jcd_A Major outer membrane li 26.0 1.6E+02 0.0055 20.1 6.3 46 229-284 4-49 (52)
71 2zqm_A Prefoldin beta subunit 24.7 2.2E+02 0.0076 21.3 10.9 20 269-288 93-112 (117)
72 4etp_A Kinesin-like protein KA 24.6 2.4E+02 0.008 26.7 8.3 58 125-182 4-61 (403)
73 4dnd_A Syntaxin-10, SYN10; str 24.2 1.9E+02 0.0066 23.1 6.5 46 236-282 81-127 (130)
74 1l8d_A DNA double-strand break 24.2 2.3E+02 0.0078 21.2 10.6 19 233-251 68-86 (112)
75 2jee_A YIIU; FTSZ, septum, coi 23.4 2.3E+02 0.008 21.1 8.6 7 199-205 53-59 (81)
76 1ic2_A Tropomyosin alpha chain 23.3 2.1E+02 0.0073 20.6 9.1 18 193-210 47-64 (81)
77 2v4h_A NF-kappa-B essential mo 23.1 2.8E+02 0.0095 21.9 10.6 26 132-157 25-50 (110)
78 1zbt_A RF-1, peptide chain rel 22.6 2.7E+02 0.0094 26.3 8.2 20 264-283 91-110 (371)
79 3onj_A T-snare VTI1; helix, HA 22.6 2.5E+02 0.0084 21.1 7.6 59 229-288 34-94 (97)
80 2yy0_A C-MYC-binding protein; 22.6 97 0.0033 21.1 3.8 19 236-254 33-51 (53)
81 2dq0_A Seryl-tRNA synthetase; 22.6 4.3E+02 0.015 25.3 9.8 73 213-286 14-95 (455)
82 2lw1_A ABC transporter ATP-bin 21.7 2.3E+02 0.008 20.7 6.2 54 230-283 23-79 (89)
83 3efg_A Protein SLYX homolog; x 21.1 1E+02 0.0035 22.6 3.9 24 192-215 40-63 (78)
84 2k48_A Nucleoprotein; viral pr 21.1 3E+02 0.01 21.5 10.1 25 191-215 79-103 (107)
85 2pnv_A Small conductance calci 20.9 1.9E+02 0.0064 19.0 4.9 9 149-157 20-28 (43)
86 1m1j_B Fibrinogen beta chain; 20.8 5.8E+02 0.02 24.7 14.7 23 231-253 170-192 (464)
87 2dq3_A Seryl-tRNA synthetase; 20.8 4E+02 0.014 25.2 9.1 75 212-287 13-102 (425)
88 2ke4_A CDC42-interacting prote 20.6 2.9E+02 0.0098 21.1 10.9 71 145-215 15-90 (98)
89 1gqe_A Release factor 2, RF2; 20.6 2.4E+02 0.0081 26.7 7.3 17 270-286 97-113 (365)
90 3iv1_A Tumor susceptibility ge 20.5 2.6E+02 0.009 20.6 8.7 21 187-207 53-73 (78)
91 3o6q_B Stage II sporulation pr 20.3 42 0.0014 23.3 1.5 17 37-53 26-42 (56)
92 2oqq_A Transcription factor HY 20.2 1.8E+02 0.0061 19.1 4.4 25 133-157 5-29 (42)
93 1m1j_C Fibrinogen gamma chain; 20.0 5.7E+02 0.019 24.3 11.1 15 201-215 84-98 (409)
94 3t97_C Nuclear pore glycoprote 20.0 2.4E+02 0.0082 19.9 6.0 47 130-183 11-57 (64)
95 1wle_A Seryl-tRNA synthetase; 20.0 2.8E+02 0.0097 27.1 8.0 72 214-285 54-141 (501)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.52 E-value=0.85 Score=40.91 Aligned_cols=29 Identities=3% Similarity=-0.007 Sum_probs=15.4
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHhhh
Q 022524 191 NWKTNLAVMASKERQYLQQYNNYKALLNR 219 (295)
Q Consensus 191 ~~~r~~k~L~aK~~Ey~~ri~~le~~l~~ 219 (295)
+..+.++-+...+.+.+.+|..++.++.+
T Consensus 57 d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 57 ALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555555555555555555555543
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.71 E-value=0.13 Score=55.72 Aligned_cols=8 Identities=13% Similarity=0.513 Sum_probs=3.7
Q ss_pred HHHHHHhh
Q 022524 24 VKAWLASQ 31 (295)
Q Consensus 24 V~sWL~~~ 31 (295)
+..|+..+
T Consensus 828 ~r~~~~~k 835 (1184)
T 1i84_S 828 VRSFMNVX 835 (1184)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 44455443
No 3
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.63 E-value=1.8 Score=37.75 Aligned_cols=145 Identities=10% Similarity=0.064 Sum_probs=67.9
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc----ch-------hhHHHHHHhHHHH
Q 022524 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAP----CE-------AQMENWKTNLAVM 199 (295)
Q Consensus 131 ~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~----~~-------~~~~~~~r~~k~L 199 (295)
..+-++..++.+-.+..++++.+++.-...+.|....+.. .+..|+.++.. +. ......+..+..|
T Consensus 24 q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~---~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l 100 (189)
T 2v71_A 24 QSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA---DNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 100 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544444555544433 33444443321 11 1122223334444
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 022524 200 ASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAA 279 (295)
Q Consensus 200 ~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~L 279 (295)
......|+.+|..++..+-..--...++..++..+...|....++..=|+..|.. ....+.++.++|.|++.|
T Consensus 101 ~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E-------Ke~l~~~~QRLkdE~rDL 173 (189)
T 2v71_A 101 RAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE-------KESLLVSVQRLKDEARDL 173 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHCCC----------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 5555555555555543221100001135568888888888888888888888873 667778888888888888
Q ss_pred HHHHHH
Q 022524 280 EKYLED 285 (295)
Q Consensus 280 e~~l~~ 285 (295)
..++.-
T Consensus 174 k~El~v 179 (189)
T 2v71_A 174 RQELAV 179 (189)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 877643
No 4
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.54 E-value=6.2 Score=39.35 Aligned_cols=91 Identities=7% Similarity=0.123 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----ccchhhHHHHHHhHHHHHhh
Q 022524 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV----APCEAQMENWKTNLAVMASK 202 (295)
Q Consensus 127 ~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~----~~~~~~~~~~~r~~k~L~aK 202 (295)
-+|...|++|..+++++++.+...+.-+..+-++|++.+.......+...++-.++ .-+...+.....|++.|..-
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999888666665655666666677776666665554444443333 22445566666889999999
Q ss_pred HHHHHHHHHHHHHHh
Q 022524 203 ERQYLQQYNNYKALL 217 (295)
Q Consensus 203 ~~Ey~~ri~~le~~l 217 (295)
+++.+.+|..||...
T Consensus 140 Ledq~~kIQRLEvDI 154 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999654
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.80 E-value=14 Score=32.75 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHH
Q 022524 107 SSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRA 148 (295)
Q Consensus 107 ~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~ 148 (295)
..|..|.++..+ |+....+.+.+-.+..++.+++....
T Consensus 5 ~~L~~L~~LQ~l----D~~i~~l~~~~~~lp~el~~le~~~~ 42 (256)
T 3na7_A 5 THLKQLIEISHL----DKEIDSLEPLIREKRKDLDKALNDKE 42 (256)
T ss_dssp HHHHHHHHHHHH----HHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344455544432 23334444444444444444443333
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.99 E-value=3 Score=45.20 Aligned_cols=7 Identities=0% Similarity=-0.035 Sum_probs=3.4
Q ss_pred HHHHHHh
Q 022524 24 VKAWLAS 30 (295)
Q Consensus 24 V~sWL~~ 30 (295)
+..+|..
T Consensus 752 ~~~lL~~ 758 (1184)
T 1i84_S 752 CILMIKA 758 (1184)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3455554
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.21 E-value=17 Score=35.34 Aligned_cols=52 Identities=6% Similarity=0.060 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 228 HGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHS 289 (295)
Q Consensus 228 h~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~~ 289 (295)
.+.+.++.+.+..+++++..++.+++ ..+..+++.++|...++.++.+..+.
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~le~~~~----------~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 529 RTEADAKQKETEDLEQENIALEKQLD----------NKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhhhcchhhHHhhhHHHHHHHh----------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677777777777777764 34566677777777777777666553
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=83.89 E-value=17 Score=34.74 Aligned_cols=91 Identities=10% Similarity=0.153 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----ccchhhHHHHHHhHHHHHhh
Q 022524 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV----APCEAQMENWKTNLAVMASK 202 (295)
Q Consensus 127 ~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~----~~~~~~~~~~~r~~k~L~aK 202 (295)
..|...|.+|...++...+.......-+..+.+++++.++-.....+...++-+++ .-+...+.....+++.|..-
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666777777777776666555544555555555555554444333333332222 12334445555577777777
Q ss_pred HHHHHHHHHHHHHHh
Q 022524 203 ERQYLQQYNNYKALL 217 (295)
Q Consensus 203 ~~Ey~~ri~~le~~l 217 (295)
++..+-+|..+|...
T Consensus 143 l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 143 VRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777654
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.96 E-value=36 Score=33.05 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=9.9
Q ss_pred HHHHHHHHhcHhHHHhhhhhc-CCCCCHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQ-DLPPDKA 263 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~-dLPpd~~ 263 (295)
+.+.+++++...++.+++... .++-|++
T Consensus 558 ~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 558 AKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344444444444444444333 3444444
No 10
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=78.57 E-value=21 Score=27.56 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=47.7
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHH
Q 022524 194 TNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKK 273 (295)
Q Consensus 194 r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear 273 (295)
.+|..|+.....+.+|+..++..+.. ..+...+..+.+..|..++..++..|..|.. .+..|..+++++.
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~-------~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee---~L~ea~~kLee~e 78 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKA-------AEERSKQLEDDIVQLEKQLRVTEDSRDQVLE---ELHKSEDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 44555555556666666555554331 1233444557777788888888888877765 5666777777776
Q ss_pred HHHHHHHH
Q 022524 274 RQYAAAEK 281 (295)
Q Consensus 274 ~EL~~Le~ 281 (295)
+-....|.
T Consensus 79 k~~~~aE~ 86 (101)
T 3u1c_A 79 ENAAKAES 86 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65554443
No 11
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.53 E-value=17 Score=29.75 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=44.0
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHH
Q 022524 134 GDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNY 213 (295)
Q Consensus 134 ~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~l 213 (295)
+++.-++|...+....++.+++.+ .+++.. |+.++....-+.+...+.+.-+..+..+++.++..+
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~----~kE~~~----------lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENK----DKEIYD----------LKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888877777665555554 444433 222332233445566666777888888888888887
Q ss_pred HHHhh
Q 022524 214 KALLN 218 (295)
Q Consensus 214 e~~l~ 218 (295)
++.+.
T Consensus 130 e~~~~ 134 (138)
T 3hnw_A 130 ETELN 134 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=75.06 E-value=16 Score=31.11 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022524 148 AKVQKESKILLDYTRKAIARLTYLKRTLGQ 177 (295)
Q Consensus 148 ~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~ 177 (295)
..+++++..+...|+.+-.....|+|+-.+
T Consensus 9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~tE 38 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDTAVRLRKSHTE 38 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555555555555555544333
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.53 E-value=25 Score=28.14 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCC
Q 022524 202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDL 258 (295)
Q Consensus 202 K~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL 258 (295)
.+..|+..|..++..|.. ....+.....+|.+|..-+..|+..+..|+.|
T Consensus 78 ~l~~~q~~i~~lE~eL~~-------~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkL 127 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQ-------LRCEMEQQNQEYKILLDVKTRLEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556555555331 11233333467888888888899888888754
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.13 E-value=91 Score=37.69 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=9.1
Q ss_pred CCchhHHHHHHHHH
Q 022524 123 DTELSSFLVAMGDI 136 (295)
Q Consensus 123 dts~~sl~~ai~~L 136 (295)
.+.|.||..-|...
T Consensus 1891 yvTP~syLeli~~y 1904 (3245)
T 3vkg_A 1891 YVTPRHYLDFINQV 1904 (3245)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 56788877655543
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=70.64 E-value=33 Score=26.22 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=39.1
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHH
Q 022524 195 NLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKR 274 (295)
Q Consensus 195 ~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~ 274 (295)
+|..|+.....+.+|+..++..+.. ......+..+.+..|..++..++..+..|.. .+..|..+++.+.+
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~-------~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e---~l~~a~~kLe~~ek 79 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQ-------AEDRCKQLEEEQQGLQKKLKGTEDEVEKYSE---SVKEAQEKLEQAEK 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3444444445555555444443221 1122333445666677777777777666655 44555555655555
Q ss_pred HHHHHH
Q 022524 275 QYAAAE 280 (295)
Q Consensus 275 EL~~Le 280 (295)
.....+
T Consensus 80 ~~~~AE 85 (101)
T 3u59_A 80 KATDAE 85 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 16
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=70.43 E-value=58 Score=31.14 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch
Q 022524 149 KVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCE 186 (295)
Q Consensus 149 rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~ 186 (295)
.|+++|..|++.+...+..+..|+.-|+.+..++.+++
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888888888888887777755555544443333
No 17
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=68.65 E-value=46 Score=27.00 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=56.4
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCCCCC--C------------------cHHHHHHHHHHHHHHHHhcHhHHHhhhhhcC
Q 022524 198 VMASKERQYLQQYNNYKALLNRVGYTPE--I------------------SHGVLVEMAEHRKELEKKTKPILDTLRSYQD 257 (295)
Q Consensus 198 ~L~aK~~Ey~~ri~~le~~l~~~g~~~s--~------------------sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~d 257 (295)
.|..|+.++..+++.++..+...+...+ + -.+.|.++...+.+|..++..|+..+.-+..
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~~e~ 89 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEE 89 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666666665543222110 0 0112455667888999999999999998887
Q ss_pred CCCC------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 258 LPPD------KALAALAIEDKKRQYAAAEKYLEDVL 287 (295)
Q Consensus 258 LPpd------~~lAr~kiEear~EL~~Le~~l~~~~ 287 (295)
+ + ....+..+...+.||......|...+
T Consensus 90 ~--~~~~~~~~e~le~~la~KkAEleKtqa~Ld~al 123 (125)
T 2pms_C 90 N--NNVEDYFKEGLEKTIAAKKAELEKTEADLKKAV 123 (125)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred c--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3 56667777778888887777776543
No 18
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=68.05 E-value=25 Score=26.28 Aligned_cols=60 Identities=5% Similarity=0.094 Sum_probs=46.5
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhh
Q 022524 193 KTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLR 253 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~ 253 (295)
+|.++.|-.++..+..+|+.++..++.-++-. -.+..+.++...+.++..++..+..+..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~-~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFS-QPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788899999999999999999988766521 2567888888888888877777766653
No 19
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=65.97 E-value=52 Score=29.10 Aligned_cols=41 Identities=7% Similarity=-0.032 Sum_probs=26.4
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhH
Q 022524 99 ESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRK 140 (295)
Q Consensus 99 ~sLs~~G~~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~ 140 (295)
..+...|..|+++++.++..--...+ ...+|.+|...+..-
T Consensus 44 ~a~~~A~~~y~dA~~Kige~A~~S~~-skeLG~vL~qis~~h 84 (222)
T 3ok8_A 44 HALSEAAEVYFSAIQKIGEQALQSST-SQILGEILVQMSDTQ 84 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHH
Confidence 34567788888888888865433223 366777777665433
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=65.29 E-value=30 Score=37.26 Aligned_cols=7 Identities=29% Similarity=0.211 Sum_probs=3.1
Q ss_pred HHHHHHh
Q 022524 24 VKAWLAS 30 (295)
Q Consensus 24 V~sWL~~ 30 (295)
+..||.+
T Consensus 728 ~~~il~~ 734 (1080)
T 2dfs_A 728 CKNVLEK 734 (1080)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 4444443
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=63.86 E-value=72 Score=27.54 Aligned_cols=23 Identities=4% Similarity=0.120 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhcHhHHHhhh
Q 022524 231 LVEMAEHRKELEKKTKPILDTLR 253 (295)
Q Consensus 231 l~~~~e~~~eL~~~~k~L~~kL~ 253 (295)
+-.+...+..|......|..+|+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 22
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=61.38 E-value=1.1e+02 Score=29.82 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=11.3
Q ss_pred HhHHHHHhhHHHHHHHHHHHHH
Q 022524 194 TNLAVMASKERQYLQQYNNYKA 215 (295)
Q Consensus 194 r~~k~L~aK~~Ey~~ri~~le~ 215 (295)
.++..|..+++.++.+|..++.
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~ 189 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLEN 189 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 23
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=60.76 E-value=70 Score=31.38 Aligned_cols=90 Identities=4% Similarity=0.133 Sum_probs=54.4
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc----cchhhHHHHHHhHHHHHhhH
Q 022524 128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVA----PCEAQMENWKTNLAVMASKE 203 (295)
Q Consensus 128 sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~----~~~~~~~~~~r~~k~L~aK~ 203 (295)
.|...|.+|...+++..+.......-+..+.+++++.++-.....+...++-+++. -+........+|++.|..-+
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l 141 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSI 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666665554444444455555555555555444434433333331 13355555668899999999
Q ss_pred HHHHHHHHHHHHHh
Q 022524 204 RQYLQQYNNYKALL 217 (295)
Q Consensus 204 ~Ey~~ri~~le~~l 217 (295)
+..+-+|..||...
T Consensus 142 ~~q~skIQRLE~dI 155 (491)
T 1m1j_A 142 QEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888754
No 24
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=59.84 E-value=27 Score=25.64 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022524 204 RQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 204 ~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l 283 (295)
|||++.|..+... ...+..+.+++.+|..++..++... +||. .|++.|++=-.|..++
T Consensus 3 pe~~d~I~~Lk~~-----------d~~f~~L~~eH~~LD~~I~~le~~~------~~~~-----~l~~LKk~KL~LKDeI 60 (76)
T 1zhc_A 3 HEFRDEISVLKAN-----------NPHFDKIFEKHNQLDDDIKTAEQQN------ASDA-----EVSHMKKQKLKLKDEI 60 (76)
T ss_dssp HHHHHHHHHSTTT-----------STTHHHHHHHHHHHHHHHHHHHTTC------SCHH-----HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHHHHhcCC------CChH-----HHHHHHHHHHHhHHHH
Confidence 7888888666542 2356666677777777776665322 2333 7777777777777777
Q ss_pred HHHHHHh
Q 022524 284 EDVLHSA 290 (295)
Q Consensus 284 ~~~~~~~ 290 (295)
...++.+
T Consensus 61 ~~lL~~~ 67 (76)
T 1zhc_A 61 HSMIIEY 67 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 25
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=57.35 E-value=37 Score=28.03 Aligned_cols=66 Identities=8% Similarity=0.060 Sum_probs=38.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhc--CCCCCCcHHHHHHHHHHHHHHHHh--------cHhHHHhhhhhcCCCCCH
Q 022524 196 LAVMASKERQYLQQYNNYKALLNRV--GYTPEISHGVLVEMAEHRKELEKK--------TKPILDTLRSYQDLPPDK 262 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l~~~--g~~~s~sh~~l~~~~e~~~eL~~~--------~k~L~~kL~sy~dLPpd~ 262 (295)
+..|+.|++++-.|+..+..-+... |+.|. +-.=+.++-..+..+..+ ...|+.-+..|..||++.
T Consensus 52 i~alK~KSp~L~~K~~~l~~~lk~Ki~~L~Pe-ak~Fv~kli~~~r~l~~~~~~G~k~~~~~lK~~~~~ykaLS~~a 127 (140)
T 2w9y_A 52 IDEVSKKHPELGKRLATVLEGNKKRLDGLSPA-AVEYAKKLIHMVTTTLCSLTVGKPIDDADAKRLHQEFQSLSSED 127 (140)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHTTTTCCHH-HHHHHHHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCHHH
Confidence 6678888888888888877766542 55332 222333333344444443 344555567888887643
No 26
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=56.04 E-value=32 Score=22.63 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=28.8
Q ss_pred hhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc
Q 022524 217 LNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ 256 (295)
Q Consensus 217 l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~ 256 (295)
|..-|+ +-+.+.+++.++..|..++..|+.+|....
T Consensus 12 lkkegf----speelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 12 LKKEGF----SPEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHTTC----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455688 668888888888899888888888887654
No 27
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=54.49 E-value=26 Score=26.85 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=31.2
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCc-----------HHHHHHHHHHHHHHHHhcHhHHHh
Q 022524 193 KTNLAVMASKERQYLQQYNNYKALLNRVGYTPEIS-----------HGVLVEMAEHRKELEKKTKPILDT 251 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~s-----------h~~l~~~~e~~~eL~~~~k~L~~k 251 (295)
.+-+.-+...+..|+..|..+|..|.+.....++| |+..++++..+..+-..++.++.+
T Consensus 11 ~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~ 80 (93)
T 3t98_B 11 RVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777776655422212223 444455555555555555555443
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.32 E-value=79 Score=25.02 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCC
Q 022524 202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDL 258 (295)
Q Consensus 202 K~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL 258 (295)
.+..|+..|..++..|.. .-..+.....+|.+|..-+..|+..+..|..|
T Consensus 76 ~l~~~q~~i~~lE~eL~~-------~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQK-------AKQDMARLLREYQELMNTKLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666655431 11233334477888888888999999999866
No 29
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=54.25 E-value=20 Score=27.90 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=39.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 022524 220 VGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAE 280 (295)
Q Consensus 220 ~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le 280 (295)
.||+.-..|..|..+ .++..++..|..++..|-|.++|...-+.. |.+-++|=.|+
T Consensus 6 ~~~~~~~~~~pi~kI----~~I~~ev~~L~~~V~~f~g~k~dkey~~L~-E~L~k~LLkLD 61 (99)
T 1ugo_A 6 SGMDMGNQHPSISRL----QEIQREVKAIEPQVVGFSGLSDDKNYKRLE-RILTKQLFEID 61 (99)
T ss_dssp CCCCCSCCCTTHHHH----HHHHHHHHHSHHHHHTCCCCTTSSHHHHHH-HHHHHHHHHHH
T ss_pred CccccCCCCCcHHHH----HHHHHHHHHHHHHHHHhcCCchhHHHHHHH-HHHHHHHHHHc
Confidence 455544556665444 355567778999999999999998776665 77777766655
No 30
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=51.83 E-value=42 Score=24.62 Aligned_cols=50 Identities=8% Similarity=0.074 Sum_probs=34.2
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc
Q 022524 200 ASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ 256 (295)
Q Consensus 200 ~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~ 256 (295)
..-...|+..|..++..|.. ....+.....+|.+|..-+..|+..+..|.
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~-------~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAE-------MRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777776542 223344444788888888889999999986
No 31
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=51.40 E-value=1.3e+02 Score=26.72 Aligned_cols=37 Identities=5% Similarity=-0.012 Sum_probs=23.4
Q ss_pred CChhHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhH
Q 022524 101 LPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISL 138 (295)
Q Consensus 101 Ls~~G~~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~ 138 (295)
+...|..|+++|..+|..-.-..++ ..+|.+|..+..
T Consensus 48 ~~~a~~~f~dal~kia~~A~~s~gs-~elG~~L~~i~~ 84 (253)
T 2ykt_A 48 VTYAAKGYFDALVKMGELASESQGS-KELGDVLFQMAE 84 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHH
Confidence 4567778888888887653322233 677777766443
No 32
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=50.14 E-value=97 Score=24.82 Aligned_cols=18 Identities=6% Similarity=0.145 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022524 153 ESKILLDYTRKAIARLTY 170 (295)
Q Consensus 153 ~i~~L~~~l~k~l~~~~~ 170 (295)
+-.....+|..+++....
T Consensus 22 ECrN~T~lLq~qLTqAQe 39 (121)
T 3mq7_A 22 EARNVTHLLQQELTEAQK 39 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 444444555555555443
No 33
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=47.80 E-value=1.8e+02 Score=27.24 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=12.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHh
Q 022524 196 LAVMASKERQYLQQYNNYKALL 217 (295)
Q Consensus 196 ~k~L~aK~~Ey~~ri~~le~~l 217 (295)
...|..|+.++++....++.+-
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh
Confidence 3345556666666655555543
No 34
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=47.16 E-value=1.2e+02 Score=28.66 Aligned_cols=25 Identities=32% Similarity=0.213 Sum_probs=14.1
Q ss_pred CHH---HHHHHHHHHHHHHHHHHHHHHH
Q 022524 261 DKA---LAALAIEDKKRQYAAAEKYLED 285 (295)
Q Consensus 261 d~~---lAr~kiEear~EL~~Le~~l~~ 285 (295)
|++ +|+.+|..++.++..++.+|..
T Consensus 67 D~e~~~~a~~e~~~l~~~~~~le~~l~~ 94 (354)
T 3d5a_X 67 DPELKEMAKAEREALLARKEALEKELER 94 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 4555666666666666555443
No 35
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=46.10 E-value=40 Score=31.91 Aligned_cols=18 Identities=11% Similarity=-0.032 Sum_probs=7.4
Q ss_pred HHhHHHHHhhHHHHHHHH
Q 022524 193 KTNLAVMASKERQYLQQY 210 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey~~ri 210 (295)
+|.+.-+..+..+.+.+.
T Consensus 403 ~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 403 QQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHh
Confidence 334444444444444433
No 36
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=45.87 E-value=1.7e+02 Score=26.29 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhccccchhhHH-HHHHhHHHHHhhHHHHHHHHHHHHHHhhh
Q 022524 142 AVEEKRAKVQKESKILLDYTRKAIARLT-YLKRTLGQLEDDVAPCEAQME-NWKTNLAVMASKERQYLQQYNNYKALLNR 219 (295)
Q Consensus 142 ~~e~~~~rl~~~i~~L~~~l~k~l~~~~-~L~~~L~~L~~d~~~~~~~~~-~~~r~~k~L~aK~~Ey~~ri~~le~~l~~ 219 (295)
+.+.-+.++...++.+...|..-...+. .+.+.+.+++..+..+..... .|..|+.-|..|+.-|-..+.+--..
T Consensus 12 ~~e~lr~~l~~~~eel~~~L~P~~~~l~~~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~--- 88 (273)
T 3s84_A 12 DSEKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRE--- 88 (273)
T ss_dssp CTTHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred chHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---
Q ss_pred cCCCCCCcHHHHHHHH-----HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 220 VGYTPEISHGVLVEMA-----EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVL 287 (295)
Q Consensus 220 ~g~~~s~sh~~l~~~~-----e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~ 287 (295)
..+.|...- +-...+...+..|+.+|.+| .+++|..+..--..|.+.+
T Consensus 89 -------~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py-------------~eelr~k~~~~leeLr~~l 141 (273)
T 3s84_A 89 -------NADSLQASLRPHADELKAKIDQNVEELKGRLTPY-------------ADEFKVKIDQTVEELRRSL 141 (273)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhH-------------HHHHHHHHHHHHHHHHHHh
No 37
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=44.66 E-value=81 Score=22.31 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q 022524 204 RQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDL-PPDKALAALAIEDKKRQYAAAEKY 282 (295)
Q Consensus 204 ~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL-Ppd~~lAr~kiEear~EL~~Le~~ 282 (295)
.||++|+++.+..|...|- +...+.+.+ .++...+..|..|.|- -|.+ |..|+|-..+..+
T Consensus 5 aefkqrlaaiktrlqalgg----seaelaafe-------keiaafeselqaykgkgnpev-------ealrkeaaairde 66 (73)
T 2a3d_A 5 AEFKQRLAAIKTRLQALGG----SEAELAAFE-------KEIAAFESELQAYKGKGNPEV-------EALRKEAAAIRDE 66 (73)
T ss_dssp HHHHHHHHHHHHHHHHCSS----GGGTHHHHH-------HHHHHHHHHHHHSSSCCSSTT-------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC----cHHHHHHHH-------HHHHHHHHHHHHhccCCChHH-------HHHHHHHHHHHHH
Confidence 5889999999988888776 434444444 5566677788888864 2444 4777777777766
Q ss_pred HH
Q 022524 283 LE 284 (295)
Q Consensus 283 l~ 284 (295)
|.
T Consensus 67 lq 68 (73)
T 2a3d_A 67 LQ 68 (73)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 38
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=43.71 E-value=71 Score=23.74 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=33.2
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCC
Q 022524 200 ASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDL 258 (295)
Q Consensus 200 ~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL 258 (295)
......|+..|..++..+.. .-..+.....+|.+|..-+..|+..+..|+.|
T Consensus 27 ~~~l~~~q~~i~~lE~el~~-------~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkL 78 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAE-------MRARMQQQLDEYQELLDIKLALDMEIHAYRKL 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44566666677666665442 11233333467888888888888888888644
No 39
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=42.02 E-value=1.3e+02 Score=25.51 Aligned_cols=6 Identities=17% Similarity=0.158 Sum_probs=2.6
Q ss_pred CCCCHH
Q 022524 258 LPPDKA 263 (295)
Q Consensus 258 LPpd~~ 263 (295)
+-++++
T Consensus 126 l~~~~E 131 (191)
T 1nfn_A 126 LGQSTE 131 (191)
T ss_dssp TTCCCH
T ss_pred HHHHHH
Confidence 444444
No 40
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=41.05 E-value=85 Score=23.93 Aligned_cols=53 Identities=8% Similarity=0.115 Sum_probs=35.2
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCC
Q 022524 199 MASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDL 258 (295)
Q Consensus 199 L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL 258 (295)
+......|+..|..++..+.. .-..+.....+|.+|..-+..|+..+..|..|
T Consensus 35 ~~~e~~~~q~~i~~lE~eL~~-------~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkL 87 (95)
T 3mov_A 35 LAKEKDNSRRMLTDKEREMAE-------IRDQMQQQLNDYEQLLDVKLALDMEISAYRKL 87 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777776542 11233333467788888888888888888654
No 41
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=40.87 E-value=5.7e+02 Score=31.08 Aligned_cols=46 Identities=9% Similarity=0.001 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 230 VLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLED 285 (295)
Q Consensus 230 ~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~ 285 (295)
.|.++.++|.+..+++..|+.+++ .++.+++.|.+=+..|..|..+
T Consensus 2043 ~l~~L~~~~~~~~~ek~~L~~e~~----------~~~~kl~rA~~Li~gL~~Ek~R 2088 (3245)
T 3vkg_A 2043 SIATYKEEYATLIRETEQIKTESS----------KVKNKVDRSIALLDNLNSERGR 2088 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhhhcccc
Confidence 455556666666666666666544 5777888887777777766543
No 42
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=40.03 E-value=1.5e+02 Score=24.21 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=35.2
Q ss_pred hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHH-HHHHHHHHHhcHhHHHhhh
Q 022524 187 AQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEM-AEHRKELEKKTKPILDTLR 253 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~-~e~~~eL~~~~k~L~~kL~ 253 (295)
...++..|..++|..+.-.+..||..++.+|...- .+.+. ..+|.+.-+++.-++..|.
T Consensus 31 k~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak--------~~aeeadrKyeE~~RKl~~~E~dLe 90 (147)
T 2b9c_A 31 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK--------HIAEDADRKYEEVARKLVIIESDLE 90 (147)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44455667788888888888888888887765221 11111 1455555555555555544
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.19 E-value=1.3e+02 Score=23.20 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=19.0
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022524 135 DISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182 (295)
Q Consensus 135 ~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~ 182 (295)
.+--++..++......+.++..|...+.++-..=....+....++.++
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443344444444444443333333333333333333
No 44
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=38.55 E-value=1.7e+02 Score=24.32 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=10.9
Q ss_pred CChhHHHHHHHHHHHH--HHcCCC
Q 022524 101 LPSNVVSSAQVLANVA--NLLNIR 122 (295)
Q Consensus 101 Ls~~G~~aL~aLa~~A--~~Lg~~ 122 (295)
|+..|..++..|=++. ..|++.
T Consensus 23 l~~~a~~~ve~l~~seL~qqL~~~ 46 (185)
T 3r2p_A 23 LKDSGRDYVSQFEGSALGKQLNLK 46 (185)
T ss_dssp HHHHHHHHHHHHHHSHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcchHHHHHHHH
Confidence 3445555555554433 455544
No 45
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=37.10 E-value=3e+02 Score=26.97 Aligned_cols=37 Identities=8% Similarity=0.163 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 022524 149 KVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPC 185 (295)
Q Consensus 149 rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~ 185 (295)
.|++++..|.+.+...++.+..|+.-|..+..++.++
T Consensus 115 eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRL 151 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRL 151 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888777775555554444333
No 46
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=36.09 E-value=1.9e+02 Score=24.06 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=12.3
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHH
Q 022524 192 WKTNLAVMASKERQYLQQYNNYKA 215 (295)
Q Consensus 192 ~~r~~k~L~aK~~Ey~~ri~~le~ 215 (295)
....+++|+.|+.+...|..-.+.
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AER 98 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAER 98 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544443
No 47
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=34.72 E-value=2.3e+02 Score=24.60 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=10.1
Q ss_pred HhhHHHHHHHHHH
Q 022524 200 ASKERQYLQQYNN 212 (295)
Q Consensus 200 ~aK~~Ey~~ri~~ 212 (295)
++|++++++|+.+
T Consensus 188 K~KIR~lq~~Ll~ 200 (213)
T 1ik9_A 188 KTKIRSLHNKLLN 200 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7789999888743
No 48
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=33.84 E-value=1.6e+02 Score=22.46 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=15.4
Q ss_pred HHHhhHHHHHHHHHHHHHHh
Q 022524 198 VMASKERQYLQQYNNYKALL 217 (295)
Q Consensus 198 ~L~aK~~Ey~~ri~~le~~l 217 (295)
.+.+|+++|+..+..++..+
T Consensus 82 ~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 82 PMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 57888888888887776543
No 49
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=33.79 E-value=1.7e+02 Score=27.75 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=41.5
Q ss_pred HHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 211 NNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDL-----PPDKALAALAIEDKKRQYAAAEKYLED 285 (295)
Q Consensus 211 ~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL-----Ppd~~lAr~kiEear~EL~~Le~~l~~ 285 (295)
..+...+..+|++.+ ...|.++.+.+.++..++..|+.+-.....- ..+.+..+.+....+.++..++.++..
T Consensus 12 ~~~~~~~~~r~~~~~--~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (421)
T 1ses_A 12 EVFHRAIREKGVALD--LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALRE 89 (421)
T ss_dssp HHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677787643 6788888777776666666666554433311 122333445555556666666655543
No 50
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.76 E-value=79 Score=23.19 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhcHhHHHhhhhhcC
Q 022524 230 VLVEMAEHRKELEKKTKPILDTLRSYQD 257 (295)
Q Consensus 230 ~l~~~~e~~~eL~~~~k~L~~kL~sy~d 257 (295)
.|..+...+.+....+..|..+|..|+.
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555666666666667777766653
No 51
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=33.74 E-value=1.6e+02 Score=22.45 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCC-HHHHHHHHHHHHHHHHHHHHHH
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTLRSYQDLPPD-KALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd-~~lAr~kiEear~EL~~Le~~l 283 (295)
..|.+....+.+..+-+...+-.++ ++||+ -..-..+|...|.+|..+..+|
T Consensus 49 ~~i~~ie~~ldEA~eLl~qMelE~r---~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 49 KLVRDFDEKQQEANETLAEMEEELR---YAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555555566666665555555555 45655 3445678999999999988776
No 52
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=33.61 E-value=1.5e+02 Score=22.18 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=40.5
Q ss_pred hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhh
Q 022524 187 AQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRS 254 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~s 254 (295)
..++.+.+.++.|+-|+.|+.+.---++..|.+ |-..|..+.+.+..-...++.|..+|-+
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKs-------TK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKA-------TKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 667788888888888888887777667766552 3355555555555555566666665544
No 53
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.60 E-value=70 Score=23.61 Aligned_cols=50 Identities=8% Similarity=0.154 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCC
Q 022524 202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDL 258 (295)
Q Consensus 202 K~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL 258 (295)
....|+..|..++..+.. .-..+.....+|.+|..-+..|+..+..|+.|
T Consensus 27 ~~~~~q~~i~~lE~eL~~-------~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQN-------MKEEMARHLREYQDLLNVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445566666666655431 11233333467888888888888888888754
No 54
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=33.21 E-value=2.1e+02 Score=23.80 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 235 AEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 235 ~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~ 286 (295)
.++|..+..++..++.+|.....=.|+-..++..++.+|.|+.....-++.-
T Consensus 75 ~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA 126 (158)
T 3tul_A 75 KSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKA 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888888877666777788889999999988877666544
No 55
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.88 E-value=40 Score=19.69 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhcHhHHHhhhh
Q 022524 233 EMAEHRKELEKKTKPILDTLRS 254 (295)
Q Consensus 233 ~~~e~~~eL~~~~k~L~~kL~s 254 (295)
++++++..|.+++..|.++|++
T Consensus 5 elykeledlqerlrklrkklrs 26 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555666666666666654
No 56
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.53 E-value=1.6e+02 Score=22.33 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 022524 153 ESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (295)
Q Consensus 153 ~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le 214 (295)
++..|.......+.+...++..++.++......+......++.+..+..-+..|..++....
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333333444444444333333322222223333444555555555555555554333
No 57
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=32.13 E-value=2.1e+02 Score=23.40 Aligned_cols=97 Identities=12% Similarity=0.165 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcC
Q 022524 142 AVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVG 221 (295)
Q Consensus 142 ~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g 221 (295)
+++.....-+|-...|...-.+.=.++..|..+|++.+.-......+.++..|.+.++...+.-...|+..++.
T Consensus 28 eaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~------ 101 (147)
T 2b9c_A 28 EAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEG------ 101 (147)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 33333333333444444333333344444443444433222223344556667777777777766666655543
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhcHhHHHhh
Q 022524 222 YTPEISHGVLVEMAEHRKELEKKTKPILDTL 252 (295)
Q Consensus 222 ~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL 252 (295)
.|.++.+.+..+-..++.|+..-
T Consensus 102 --------k~~eLEeeL~~~~~nlKsLE~~e 124 (147)
T 2b9c_A 102 --------KCAELEEELKTVTNNLKSLEDKV 124 (147)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHHHHHHHhhHHhH
Confidence 34455555555555555554443
No 58
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.85 E-value=1.6e+02 Score=22.10 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch---h--hHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 022524 153 ESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCE---A--QMENWKTNLAVMASKERQYLQQYNNYK 214 (295)
Q Consensus 153 ~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~---~--~~~~~~r~~k~L~aK~~Ey~~ri~~le 214 (295)
++..|......--+.+..+.+.+..+..+...|| . ....|...+.....+..+++.++..+.
T Consensus 18 ~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~ 84 (112)
T 1l8d_A 18 ERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLI 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444445566655444454 1 112333334444444444444444333
No 59
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.74 E-value=1.8e+02 Score=22.53 Aligned_cols=64 Identities=13% Similarity=0.204 Sum_probs=39.8
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHhhh----cCCCCC----------CcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc
Q 022524 193 KTNLAVMASKERQYLQQYNNYKALLNR----VGYTPE----------ISHGVLVEMAEHRKELEKKTKPILDTLRSYQ 256 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey~~ri~~le~~l~~----~g~~~s----------~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~ 256 (295)
.+.++.|..--..++.++..++..|-. ..|+++ +.-....+..+.+..|.+++..|+.+|+.-.
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666667777777776655 445553 2223444555777777777777777776544
No 60
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=31.47 E-value=1.7e+02 Score=22.20 Aligned_cols=60 Identities=10% Similarity=0.201 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 227 SHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPD-KALAALAIEDKKRQYAAAEKYLEDVLHS 289 (295)
Q Consensus 227 sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd-~~lAr~kiEear~EL~~Le~~l~~~~~~ 289 (295)
-...|.+....+.+..+-+...+-.++. +||+ -..-..+|...|.+|..+..++....+.
T Consensus 36 rk~~i~~ie~~l~EA~ell~qMelE~r~---~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 36 KKQMVANVEKQLEEARELLEQMDLEVRE---IPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT---SCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777766777777666666666654 4665 5566789999999999999999876554
No 61
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.94 E-value=2.1e+02 Score=23.09 Aligned_cols=51 Identities=10% Similarity=-0.078 Sum_probs=29.8
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022524 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (295)
Q Consensus 129 l~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~ 179 (295)
+++.+..+..+...++++...+++++..|...+......+..+.+.+.+|+
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~ 116 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELK 116 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777777776666776665554444444444444444443
No 62
>1pxq_A Subtilisin A; thioether bridge, cyclic peptide, bacteriocin, antimicrobial; HET: 2TL DPN; NMR {Bacillus subtilis} SCOP: j.5.1.2
Probab=29.36 E-value=21 Score=22.11 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=8.8
Q ss_pred CCCCCCCccC
Q 022524 36 AKEVPAFEYT 45 (295)
Q Consensus 36 ~~pvP~fErN 45 (295)
+.|||.||+-
T Consensus 16 dgpipdfeva 25 (35)
T 1pxq_A 16 DGPIPDFEIA 25 (35)
T ss_dssp TTTCCCSCCS
T ss_pred cCCCCCchhh
Confidence 7899999985
No 63
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=29.04 E-value=61 Score=22.10 Aligned_cols=30 Identities=7% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcHhHHHhhhhhcCCCCCHH
Q 022524 234 MAEHRKELEKKTKPILDTLRSYQDLPPDKA 263 (295)
Q Consensus 234 ~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~ 263 (295)
+-++-.+.+..++..-..-+.|.||||||.
T Consensus 20 lLeEW~awRa~~~~~L~eer~~~~~~~~~~ 49 (50)
T 3zwl_E 20 LLKQWTEYREKIGQEMEKSMNFKIFDVQPE 49 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 335666677777777777799999999984
No 64
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=28.76 E-value=73 Score=22.03 Aligned_cols=48 Identities=8% Similarity=0.078 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCC
Q 022524 204 RQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDL 258 (295)
Q Consensus 204 ~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL 258 (295)
..|+..|..+++.+.. .-..+.....+|.+|..-+..|+..+..|..|
T Consensus 3 ~~~q~~i~~le~el~~-------~r~e~~~q~~eYq~LlniK~~Le~EIatYRkL 50 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYH-------LENEVARLKKLVGDLLNVKMALDIEIATYRKL 50 (59)
T ss_dssp CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3566666666665442 11233333467788888888888888888643
No 65
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=28.00 E-value=2e+02 Score=21.83 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=18.0
Q ss_pred HHHhhHHHHHHHHHHHHHHhhh
Q 022524 198 VMASKERQYLQQYNNYKALLNR 219 (295)
Q Consensus 198 ~L~aK~~Ey~~ri~~le~~l~~ 219 (295)
.+.+|+++|+..+..++..+..
T Consensus 71 ~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999888876643
No 66
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=27.92 E-value=1.3e+02 Score=22.77 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=26.3
Q ss_pred HHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 022524 239 KELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAA 279 (295)
Q Consensus 239 ~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~L 279 (295)
.++..++..|..++..|.|.++|...-+.. |.+-++|=.|
T Consensus 14 ~~I~~ev~~L~~~V~~f~g~~~dkey~~L~-E~L~k~LLkL 53 (87)
T 1m62_A 14 IHVLEKVQYLEQEVEEFVGKKTDKAYWLLE-EMLTKELLEL 53 (87)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTSHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcchHHHHHHH-HHHHHHHHHH
Confidence 355577778888999999999887644433 3444444333
No 67
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.77 E-value=73 Score=21.76 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 260 PDKALAALAIEDKKRQYAAAEKYLEDVL 287 (295)
Q Consensus 260 pd~~lAr~kiEear~EL~~Le~~l~~~~ 287 (295)
.|++.-|.+++++|.++..|..++.+..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666655543
No 68
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=26.61 E-value=2.6e+02 Score=22.79 Aligned_cols=58 Identities=7% Similarity=0.074 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHHHHHHH----hcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 226 ISHGVLVEMAEHRKELEK----KTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLH 288 (295)
Q Consensus 226 ~sh~~l~~~~e~~~eL~~----~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~ 288 (295)
+|.+-+..+.+++..|+. ++..--+.-+++-||.-|- ++..||+++..++.++....+
T Consensus 6 lT~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENa-----eY~aak~~q~~~e~rI~~L~~ 67 (158)
T 2p4v_A 6 VTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENA-----DYQYNKKRLREIDRRVRYLTK 67 (158)
T ss_dssp ECHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccch-----hHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777754 2222334557899999994 577788888888887665543
No 69
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=26.56 E-value=1.6e+02 Score=23.29 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=26.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHH
Q 022524 224 PEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKA 263 (295)
Q Consensus 224 ~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~ 263 (295)
+...|..+. ++.++..++..|..++..|-|.+.|..
T Consensus 22 ~~~~~p~~~----~I~~I~~eV~~L~~qV~~f~g~k~dke 57 (111)
T 1uk5_A 22 TPPKHPGVL----KVEAILEKVQGLEQAVDSFEGKKTDKK 57 (111)
T ss_dssp SCCCCHHHH----HHHHHHHHHHHHHHHHHTCCSCSSSHH
T ss_pred CCCCCcHHH----HHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence 334566654 445666777779999999999998865
No 70
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=26.00 E-value=1.6e+02 Score=20.10 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLE 284 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~ 284 (295)
..+-+++..+..|..++..|... +.-+|..+..++.|-.+.-.+++
T Consensus 4 aki~~Lss~V~~L~~kVdqLssd----------V~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASND----------ANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556666666666666666663 44455566677777777666665
No 71
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.69 E-value=2.2e+02 Score=21.30 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022524 269 IEDKKRQYAAAEKYLEDVLH 288 (295)
Q Consensus 269 iEear~EL~~Le~~l~~~~~ 288 (295)
++..+.++..+...|..+.+
T Consensus 93 ~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 93 EKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34555566666666555554
No 72
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.61 E-value=2.4e+02 Score=26.68 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022524 125 ELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182 (295)
Q Consensus 125 s~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~ 182 (295)
....+-..+..|..+..++++...+++.++..+...+.++-..-..|.+.+.+|+..+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 3456677788888888888888888888888888888888877788887888887654
No 73
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=24.23 E-value=1.9e+02 Score=23.10 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=19.1
Q ss_pred HHHHHHHHhcHhHHHhhhhhcCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 022524 236 EHRKELEKKTKPILDTLRSYQDLPPD-KALAALAIEDKKRQYAAAEKY 282 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~sy~dLPpd-~~lAr~kiEear~EL~~Le~~ 282 (295)
..+.+|.+.+.-.++.=..| +|.++ +..=|.-|...|.++..++.+
T Consensus 81 ~dLeDLe~sI~ivE~np~kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 81 WDLEDLEETIGIVEANPGKF-KLPAGDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHCHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444 34433 333333444444444444443
No 74
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.20 E-value=2.3e+02 Score=21.25 Aligned_cols=19 Identities=5% Similarity=0.092 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhcHhHHHh
Q 022524 233 EMAEHRKELEKKTKPILDT 251 (295)
Q Consensus 233 ~~~e~~~eL~~~~k~L~~k 251 (295)
.....+.++..++..|+.+
T Consensus 68 ~~~~~l~~l~~~i~~l~~~ 86 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555554444444
No 75
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.39 E-value=2.3e+02 Score=21.08 Aligned_cols=7 Identities=0% Similarity=0.297 Sum_probs=2.5
Q ss_pred HHhhHHH
Q 022524 199 MASKERQ 205 (295)
Q Consensus 199 L~aK~~E 205 (295)
|......
T Consensus 53 L~~en~q 59 (81)
T 2jee_A 53 LERENNH 59 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 76
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=23.35 E-value=2.1e+02 Score=20.64 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=6.9
Q ss_pred HHhHHHHHhhHHHHHHHH
Q 022524 193 KTNLAVMASKERQYLQQY 210 (295)
Q Consensus 193 ~r~~k~L~aK~~Ey~~ri 210 (295)
++.+..+..-+..+..++
T Consensus 47 ~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 47 QKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 77
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=23.10 E-value=2.8e+02 Score=21.86 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=17.8
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHH
Q 022524 132 AMGDISLRKTAVEEKRAKVQKESKIL 157 (295)
Q Consensus 132 ai~~Lt~e~~~~e~~~~rl~~~i~~L 157 (295)
-|.+|...+..+|+.....+..++.+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idel 50 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKL 50 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777655565555
No 78
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=22.61 E-value=2.7e+02 Score=26.33 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022524 264 LAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 264 lAr~kiEear~EL~~Le~~l 283 (295)
+|+.+|..++.++..++.+|
T Consensus 91 ~a~~e~~~l~~~l~~le~~l 110 (371)
T 1zbt_A 91 MAKEELKNSKVAKEEYEEKL 110 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444554444444433
No 79
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.59 E-value=2.5e+02 Score=21.06 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCC-HHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 022524 229 GVLVEMAEHRKELEKKTKPILDTLRSYQDLPPD-KALAALAIEDKKRQYAA-AEKYLEDVLH 288 (295)
Q Consensus 229 ~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd-~~lAr~kiEear~EL~~-Le~~l~~~~~ 288 (295)
..|.+....+.+..+-+...+-.++...+ ||+ -..-..+|...|.+|.. +..+|...+.
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~~~~~-p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVNNSIG-DASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45555666666666666666666654431 443 56667788899999999 9888877653
No 80
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.59 E-value=97 Score=21.12 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=8.4
Q ss_pred HHHHHHHHhcHhHHHhhhh
Q 022524 236 EHRKELEKKTKPILDTLRS 254 (295)
Q Consensus 236 e~~~eL~~~~k~L~~kL~s 254 (295)
.++.+|.++...|..+|..
T Consensus 33 ~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 33 EKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444443
No 81
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.58 E-value=4.3e+02 Score=25.32 Aligned_cols=73 Identities=10% Similarity=0.022 Sum_probs=37.4
Q ss_pred HHHHhhhcCC-C-CCCcHHHHHHHHHHHHHHHHhcHh-------HHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022524 213 YKALLNRVGY-T-PEISHGVLVEMAEHRKELEKKTKP-------ILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 213 le~~l~~~g~-~-~s~sh~~l~~~~e~~~eL~~~~k~-------L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l 283 (295)
+...+..+|+ + .+ ....|.++.+.+.++..++.. +-+++.....=..+....+.+....+.++..++.++
T Consensus 14 ~~~~~~~R~~~~~~~-~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (455)
T 2dq0_A 14 VKNDLIKRGELEKVK-WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEV 92 (455)
T ss_dssp HHHHHHHHTCGGGTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666 3 22 135555555544444444433 334444332223566666666666677776666665
Q ss_pred HHH
Q 022524 284 EDV 286 (295)
Q Consensus 284 ~~~ 286 (295)
...
T Consensus 93 ~~~ 95 (455)
T 2dq0_A 93 EEL 95 (455)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 82
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.69 E-value=2.3e+02 Score=20.74 Aligned_cols=54 Identities=9% Similarity=0.135 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhcHhHHHhhhh---hcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022524 230 VLVEMAEHRKELEKKTKPILDTLRS---YQDLPPDKALAALAIEDKKRQYAAAEKYL 283 (295)
Q Consensus 230 ~l~~~~e~~~eL~~~~k~L~~kL~s---y~dLPpd~~lAr~kiEear~EL~~Le~~l 283 (295)
.+..+...+..|..++..|+.+|.. |..=|.-+.....+++.+..+|..+..+-
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777888888888888888853 54312222333344444444444444443
No 83
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.14 E-value=1e+02 Score=22.60 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=10.4
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHH
Q 022524 192 WKTNLAVMASKERQYLQQYNNYKA 215 (295)
Q Consensus 192 ~~r~~k~L~aK~~Ey~~ri~~le~ 215 (295)
.++.+..|..++.-+.+|+..++.
T Consensus 40 Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 40 ARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455555555555555555444
No 84
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.09 E-value=3e+02 Score=21.52 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=18.7
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHH
Q 022524 191 NWKTNLAVMASKERQYLQQYNNYKA 215 (295)
Q Consensus 191 ~~~r~~k~L~aK~~Ey~~ri~~le~ 215 (295)
.++.-+..+.+|+.|++..++..-+
T Consensus 79 ~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 79 NRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677899999999888866543
No 85
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.91 E-value=1.9e+02 Score=19.02 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 022524 149 KVQKESKIL 157 (295)
Q Consensus 149 rl~~~i~~L 157 (295)
.+++||..|
T Consensus 20 ~LE~Ri~~L 28 (43)
T 2pnv_A 20 DFEKRIVTL 28 (43)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344455555
No 86
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.80 E-value=5.8e+02 Score=24.74 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhcHhHHHhhh
Q 022524 231 LVEMAEHRKELEKKTKPILDTLR 253 (295)
Q Consensus 231 l~~~~e~~~eL~~~~k~L~~kL~ 253 (295)
|..+...+..+..++..|+..+.
T Consensus 170 i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 170 LRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443
No 87
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.79 E-value=4e+02 Score=25.18 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=35.0
Q ss_pred HHHHHhhhcCCC-CCCcHHHHHHHHHHHHHHHHhcHhHH-------Hhhhhh-------cCCCCCHHHHHHHHHHHHHHH
Q 022524 212 NYKALLNRVGYT-PEISHGVLVEMAEHRKELEKKTKPIL-------DTLRSY-------QDLPPDKALAALAIEDKKRQY 276 (295)
Q Consensus 212 ~le~~l~~~g~~-~s~sh~~l~~~~e~~~eL~~~~k~L~-------~kL~sy-------~dLPpd~~lAr~kiEear~EL 276 (295)
.....+..+|++ .+ ....|.++.+.+.++..++..|+ +++... ..|-.....-+.+|.++..++
T Consensus 13 ~~~~~~~~r~~~~~~-~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 91 (425)
T 2dq3_A 13 YVKERLATRDKELVS-LVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEEL 91 (425)
T ss_dssp HHHHHHTTTCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666664 11 13555555554444444444433 444332 223333333444555555555
Q ss_pred HHHHHHHHHHH
Q 022524 277 AAAEKYLEDVL 287 (295)
Q Consensus 277 ~~Le~~l~~~~ 287 (295)
..++.++...+
T Consensus 92 ~~~~~~~~~~~ 102 (425)
T 2dq3_A 92 RKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 88
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.60 E-value=2.9e+02 Score=21.06 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-----ccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 022524 145 EKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV-----APCEAQMENWKTNLAVMASKERQYLQQYNNYKA 215 (295)
Q Consensus 145 ~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~-----~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~ 215 (295)
+...+++++|..|..-+.++...-.-|.+...-...+. ..++.+..+.-.+++.|..-+.-|+.-++.++.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34446667777776666666665555443333333222 234455555555666666665555555555543
No 89
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=20.58 E-value=2.4e+02 Score=26.68 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022524 270 EDKKRQYAAAEKYLEDV 286 (295)
Q Consensus 270 Eear~EL~~Le~~l~~~ 286 (295)
++|+.|+..++.++...
T Consensus 97 ~~a~~e~~~l~~~l~~l 113 (365)
T 1gqe_A 97 NEAVAELDALEEKLAQL 113 (365)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555544
No 90
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.49 E-value=2.6e+02 Score=20.62 Aligned_cols=21 Identities=10% Similarity=0.300 Sum_probs=14.5
Q ss_pred hhHHHHHHhHHHHHhhHHHHH
Q 022524 187 AQMENWKTNLAVMASKERQYL 207 (295)
Q Consensus 187 ~~~~~~~r~~k~L~aK~~Ey~ 207 (295)
.....+..|+..|+.|..|+.
T Consensus 53 ~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 53 QEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334566778888888887763
No 91
>3o6q_B Stage II sporulation protein SB; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=20.27 E-value=42 Score=23.30 Aligned_cols=17 Identities=6% Similarity=0.237 Sum_probs=14.8
Q ss_pred CCCCCCccChHHHHHHH
Q 022524 37 KEVPAFEYTSRSVAHLY 53 (295)
Q Consensus 37 ~pvP~fErN~~Tl~~L~ 53 (295)
-.||.|++-|-|.+|+-
T Consensus 26 ~s~~~y~vSPhT~rIfK 42 (56)
T 3o6q_B 26 TSVASYQVSPHTARIFK 42 (56)
T ss_dssp EEECCCCCCHHHHHHHH
T ss_pred ccccccccChhHHHHHH
Confidence 45899999999999874
No 92
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.23 E-value=1.8e+02 Score=19.10 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=13.9
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHH
Q 022524 133 MGDISLRKTAVEEKRAKVQKESKIL 157 (295)
Q Consensus 133 i~~Lt~e~~~~e~~~~rl~~~i~~L 157 (295)
+.+|.....+++..+.+++-++.+|
T Consensus 5 l~eLE~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555655555555555555
No 93
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.05 E-value=5.7e+02 Score=24.32 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHHH
Q 022524 201 SKERQYLQQYNNYKA 215 (295)
Q Consensus 201 aK~~Ey~~ri~~le~ 215 (295)
.|+....+++..++.
T Consensus 84 q~skkml~~~~~~e~ 98 (409)
T 1m1j_C 84 QKSKKIIEEIIRYEN 98 (409)
T ss_dssp HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 94
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=20.03 E-value=2.4e+02 Score=19.95 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022524 130 LVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVA 183 (295)
Q Consensus 130 ~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~ 183 (295)
+..|..|..+...++....+++++++.+ ......+.. .|..++..+.
T Consensus 11 gekI~~L~~~v~~~e~~Q~~ldq~Ld~I----e~QQ~ELe~---~L~~~E~~v~ 57 (64)
T 3t97_C 11 GEKITSLHREVEKVKLDQKRLDQELDFI----LSQQKELED---LLSPLEESVK 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHH---HHTTTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHH
Confidence 5678889999999988888666666555 444433333 4456655543
No 95
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.03 E-value=2.8e+02 Score=27.07 Aligned_cols=72 Identities=7% Similarity=0.035 Sum_probs=38.6
Q ss_pred HHHhhhcCCCCCC-cHHHHHHHHHHHHHHHHhcHhHHHh-------hhhhc--C----C--CCCHHHHHHHHHHHHHHHH
Q 022524 214 KALLNRVGYTPEI-SHGVLVEMAEHRKELEKKTKPILDT-------LRSYQ--D----L--PPDKALAALAIEDKKRQYA 277 (295)
Q Consensus 214 e~~l~~~g~~~s~-sh~~l~~~~e~~~eL~~~~k~L~~k-------L~sy~--d----L--Ppd~~lAr~kiEear~EL~ 277 (295)
...+..+|++.+. ....|.++.+.+.++..++..|+.+ +.... + . ..+.+..+.+....+.++.
T Consensus 54 ~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~ 133 (501)
T 1wle_A 54 ARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLT 133 (501)
T ss_dssp HHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHH
Confidence 3445667775321 2567777777777666666666533 32211 1 0 0234445556666666666
Q ss_pred HHHHHHHH
Q 022524 278 AAEKYLED 285 (295)
Q Consensus 278 ~Le~~l~~ 285 (295)
.++.++.+
T Consensus 134 ~l~~~~~~ 141 (501)
T 1wle_A 134 LLYPKEAQ 141 (501)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
Done!