BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022525
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
pdb|3KB1|B Chain B, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
Length = 262
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 139/228 (60%), Gaps = 4/228 (1%)
Query: 26 KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85
++D + IAV SGKGGVGKST LAV A + + KVG+LDAD GPS+P + +++
Sbjct: 13 RLDKIGFRIAVXSGKGGVGKSTVTALLAVHYAKQGK-KVGILDADFLGPSIPHLFGLEKG 71
Query: 86 PEVTKDMKMVPI--ENYGVKCMSMGFLVPS-SSPVVWRGPMVMSALRKMSREVDWGNLDI 142
D + P+ + G+K S+ FL+P +PV+WRGP++ +R+ V WG LD
Sbjct: 72 KVAVSDEGLEPVLTQRLGIKVXSIQFLLPKRETPVIWRGPLIAGXIREFLGRVAWGELDY 131
Query: 143 LVIDMPPGTGDAXXXXXXXXXXSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENM 202
L+ID+PPGTGDA +GA+IVSTPQ++ K IT + + +LG+VEN
Sbjct: 132 LLIDLPPGTGDAPLTVXQDAKPNGAVIVSTPQELTAAVVEKAITXAEQTKTAVLGIVENX 191
Query: 203 SCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDG 250
+ F CP+C E +++FG+G A + ++ I EIPI+ D+ K SD G
Sbjct: 192 AYFECPNCGERTYLFGEGKASELARKYKIEFITEIPIDSDLLKLSDLG 239
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 133/228 (58%), Gaps = 4/228 (1%)
Query: 26 KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85
++ +K IAV SGKGGVGKST LAV A + + KVG+LDAD GPS+P++ +
Sbjct: 13 RLGKIKSRIAVXSGKGGVGKSTVTALLAVHYARQGK-KVGILDADFLGPSIPILFGLRNA 71
Query: 86 PEVTKDMKMVPI--ENYGVKCMSMGFLVP-SSSPVVWRGPMVMSALRKMSREVDWGNLDI 142
+ P+ + YG+K S FL+P ++PV+WRGP++ +R+ V WG LD
Sbjct: 72 RIAVSAEGLEPVLTQKYGIKVXSXQFLLPKENTPVIWRGPLIAGXIREFLGRVAWGELDH 131
Query: 143 LVIDMPPGTGDAXXXXXXXXXXSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENM 202
L+ID+PPGTGDA +G ++VSTPQ++ + K I + +LGLVEN
Sbjct: 132 LLIDLPPGTGDAPLTVXQDAKPTGVVVVSTPQELTAVIVEKAINXAEETNTSVLGLVENX 191
Query: 203 SCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDG 250
S F+CP+C S+IFG+G A + + IPIE ++ K +D G
Sbjct: 192 SYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKLADSG 239
>pdb|3VX3|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
pdb|3VX3|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
Length = 248
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 96/179 (53%), Gaps = 2/179 (1%)
Query: 26 KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85
+++GVK +I V SGKGGVGKS + LA+ LA K +VGLLD D +G S +++ + K
Sbjct: 14 RLEGVKRIIPVVSGKGGVGKSLVSTTLALVLAEKGY-RVGLLDLDFHGASDHVILGFEPK 72
Query: 86 PEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVI 145
+D +VP +G+K M++ + P RG + AL ++ W LD LVI
Sbjct: 73 EFPEEDRGVVPPTVHGIKFMTIAYYT-EDRPTPLRGKEISDALIELLTITRWDELDYLVI 131
Query: 146 DMPPGTGDAXXXXXXXXXXSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSC 204
DMPPG GD L+V+TP ++L RK I + + ++G+VENM
Sbjct: 132 DMPPGLGDQLLDVLRFLKRGEFLVVATPSKLSLNVVRKLIELLKEEGHKVIGVVENMKL 190
>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus
Length = 263
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 32/247 (12%)
Query: 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK 93
I VASGKGG GK+T NL VALA V ++DAD+ ++ +++ ++ P
Sbjct: 5 ITVASGKGGTGKTTITANLGVALAQLGH-DVTIVDADITMANLELILGMEGLP------- 56
Query: 94 MVPIENY---GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNL-------DIL 143
V ++N + ++ P VV G + + LRK + E L DIL
Sbjct: 57 -VTLQNVLAGEARIDEAIYVGPGGVKVVPAG-VSLEGLRKANPEKLEDVLTQIMESTDIL 114
Query: 144 VIDMPPGTGDAXXXXXXXXXXSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMS 203
++D P G + L+V P+ ++ D K + ++ +LG+V N
Sbjct: 115 LLDAPAGLERSAVIAIAAAQE--LLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRI 172
Query: 204 CFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDSTVS 263
+ ++ + A + KVIG IP + ++R+ + G PVV+ +P+S +
Sbjct: 173 TTLGIEMAK----------NEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAA 222
Query: 264 RAYGEVA 270
RA E+A
Sbjct: 223 RAIVELA 229
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 116/266 (43%), Gaps = 49/266 (18%)
Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM 92
+I++ SGKGG GK+T NL+VAL + + KV +D D+ ++ +++ +D P+VT
Sbjct: 4 IISIVSGKGGTGKTTVTANLSVALGDRGR-KVLAVDGDLTMANLSLVLGVDD-PDVTLHD 61
Query: 93 KMVPIENYGVKCMSMGF----LVPSSSPVVW---------RGPMVMSALRKMSREVDWGN 139
+ N F ++P + V W + P V+ +L+
Sbjct: 62 VLAGEANVEDAIYMTQFDNVYVLPGA--VDWEHVLKADPRKLPEVIKSLKD--------K 111
Query: 140 LDILVIDMPPGTGDAXXXXXXXXXXSGALIVSTPQDVALIDARKGITMFSKVQVPILGLV 199
D ++ID P G AL+V+ P+ L D K + K + ILG V
Sbjct: 112 FDFILIDCPAGL--QLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFV 169
Query: 200 ENMSCFICPHCSEPSFIFGKGGTH--RTAAE--MGLKVIGEIPIEMDIRKGSDDGVPVVI 255
N +G+ AAE M + ++ IP + IR+G+ +G+P V
Sbjct: 170 LNR--------------YGRSDRDIPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVK 215
Query: 256 SAPDSTVSRAYGEVAVNVVNRLQELA 281
P+S ++A+ V + +++LA
Sbjct: 216 YKPESKGAKAF----VKLAEEIEKLA 237
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 23/247 (9%)
Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM 92
+I++ SGKGG GK+T NL+VAL + KV +D D+ ++ +++ +D D+
Sbjct: 4 IISIVSGKGGTGKTTVTANLSVALGEXGR-KVLAVDGDLTXANLSLVLGVDDVNITLHDV 62
Query: 93 KM--VPIEN--YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD--WGNLDILVID 146
+E+ Y + ++ +++P + V W ++ + RK+ + G D ++ID
Sbjct: 63 LAGDAKLEDAIYXTQFENV-YILPGA--VDWEH-VIKADPRKLPEVIKSLKGKYDFILID 118
Query: 147 MPPGTGDAXXXXXXXXXXSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206
P G A++V+ P+ L D K + K + ILG FI
Sbjct: 119 CPAGL--QLRAXSAXLSGEEAILVTNPEISCLTDTXKVGXVLKKAGLAILG-------FI 169
Query: 207 CPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDSTVSRAY 266
L VI E P+ IR+G+ +G+P V P+S ++A+
Sbjct: 170 LNRYGRSERDIPPEAAQDVXDVPLLAVIPEDPV---IREGTLEGIPAVKYKPESKGAQAF 226
Query: 267 GEVAVNV 273
++A V
Sbjct: 227 IKLAEEV 233
>pdb|1WCV|1 Chain 1, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEJ|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 15/122 (12%)
Query: 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK 93
IA+A+ KGGVGK+TTA+NLA LA + +V L+D D G + + + + V ++
Sbjct: 9 IALANQKGGVGKTTTAINLAAYLA-RLGKRVLLVDLDPQG-NATSGLGVRAERGVYHLLQ 66
Query: 94 MVPIENYGVKCMSMGF-LVPSSSPVVWRGPMVM-----SALRKMSREVDWGNLDILVIDM 147
P+E G+ GF L+P++ +V G V +ALR+ R+ + D++++D
Sbjct: 67 GEPLE--GLVHPVDGFHLLPATPDLV--GATVELAGAPTALREALRDEGY---DLVLLDA 119
Query: 148 PP 149
PP
Sbjct: 120 PP 121
>pdb|2BEK|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|B Chain B, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|C Chain C, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|D Chain D, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 15/122 (12%)
Query: 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK 93
IA+A+ KGGVGK+TTA+NLA LA + +V L+D G + + + + V ++
Sbjct: 9 IALANQKGGVGKTTTAINLAAYLA-RLGKRVLLVDLAPQG-NATSGLGVRAERGVYHLLQ 66
Query: 94 MVPIENYGVKCMSMGF-LVPSSSPVVWRGPMVM-----SALRKMSREVDWGNLDILVIDM 147
P+E G+ GF L+P++ +V G V +ALR+ R+ + D++++D
Sbjct: 67 GEPLE--GLVHPVDGFHLLPATPDLV--GATVELAGAPTALREALRDEGY---DLVLLDA 119
Query: 148 PP 149
PP
Sbjct: 120 PP 121
>pdb|3K9G|A Chain A, Crystal Structure Of A Plasmid Partition Protein From
Borrelia Burgdorferi At 2.25a Resolution, Iodide Soak
pdb|3K9H|A Chain A, Crystal Structure Of A Plasmid Partition Protein From
Borrelia Burgdorferi At 2.25a Resolution
pdb|3K9H|B Chain B, Crystal Structure Of A Plasmid Partition Protein From
Borrelia Burgdorferi At 2.25a Resolution
Length = 267
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
+I +AS KGGVGKST+A+ LA L+ KV L+D D
Sbjct: 29 IITIASIKGGVGKSTSAIILATLLSKNN--KVLLIDMD 64
>pdb|3CWQ|A Chain A, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
pdb|3CWQ|B Chain B, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
Length = 209
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
+I VAS KGGVGK+TTAV+L+ LA Q + L+D D
Sbjct: 2 IITVASFKGGVGKTTTAVHLSAYLA--LQGETLLIDGD 37
>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
Length = 260
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 33 VIAVASGKGGVGKSTTAVNLAVALASK 59
+I V SGKGGVGK+T++ +A LA K
Sbjct: 4 IIVVTSGKGGVGKTTSSAAIATGLAQK 30
>pdb|3BFV|A Chain A, Crystal Structure Of The Chimerical Protein Capab
pdb|3BFV|B Chain B, Crystal Structure Of The Chimerical Protein Capab
Length = 271
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 7 IFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL 66
I + G+R F + D + I + S G GKST A NLAVA A + K +
Sbjct: 62 ISEKFRGIRSNIMFANPDSAVQS----IVITSEAPGAGKSTIAANLAVAYA-QAGYKTLI 116
Query: 67 LDADVYGPS 75
+D D+ P+
Sbjct: 117 VDGDMRKPT 125
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75
G G GK+TTA LA K KVGL+ ADVY P+
Sbjct: 105 GVQGTGKTTTAGKLAY-FYKKKGFKVGLVGADVYRPA 140
>pdb|3FWY|A Chain A, Crystal Structure Of The L Protein Of Rhodobacter
Sphaeroides Light- Independent Protochlorophyllide
Reductase (Bchl) With Mgadp Bound: A Homologue Of The
Nitrogenase Fe Protein
pdb|3FWY|B Chain B, Crystal Structure Of The L Protein Of Rhodobacter
Sphaeroides Light- Independent Protochlorophyllide
Reductase (Bchl) With Mgadp Bound: A Homologue Of The
Nitrogenase Fe Protein
Length = 314
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 26 KIDGVKDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGL---------LDADVYGP 74
KI G K V AV GKGG+GKSTT+ NL+ A + K L++G L +
Sbjct: 44 KITGAK-VFAV-YGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPT 101
Query: 75 SVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108
+ ++ +D PE + V GV C+ G
Sbjct: 102 VIDVLKDVDFHPEELRPEDFVFEGFNGVMCVEAG 135
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75
G G GK+TTA LA K KVGL+ ADVY P+
Sbjct: 105 GVQGTGKATTAGKLAY-FYKKKGFKVGLVGADVYRPA 140
>pdb|2C8V|A Chain A, Insights Into The Role Of Nucleotide-Dependent
Conformational Change In Nitrogenase Catalysis:
Structural Characterization Of The Nitrogenase Fe
Protein Leu127 Deletion Variant With Bound Mgatp
Length = 288
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 39 GKGGVGKSTTAVNLAVALAS 58
GKGG+GKSTT NL ALA
Sbjct: 9 GKGGIGKSTTTQNLVAALAE 28
>pdb|1NIP|A Chain A, Crystallographic Structure Of The Nitrogenase Iron
Protein From Azotobacter Vinelandii
pdb|1NIP|B Chain B, Crystallographic Structure Of The Nitrogenase Iron
Protein From Azotobacter Vinelandii
pdb|1N2C|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1N2C|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1N2C|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1N2C|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|2NIP|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G1M|A Chain A, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G1M|B Chain B, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G5P|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G5P|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|B Chain B, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|C Chain C, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|D Chain D, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1M1Y|E Chain E, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|F Chain F, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|G Chain G, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|H Chain H, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|M Chain M, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|N Chain N, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|O Chain O, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|P Chain P, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|M Chain M, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|N Chain N, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|O Chain O, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|P Chain P, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|2AFH|E Chain E, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|F Chain F, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|E Chain E, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|F Chain F, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|G Chain G, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|H Chain H, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|M Chain M, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|N Chain N, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|O Chain O, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|P Chain P, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|E Chain E, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|F Chain F, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|G Chain G, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|H Chain H, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
Length = 289
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 39 GKGGVGKSTTAVNLAVALAS 58
GKGG+GKSTT NL ALA
Sbjct: 9 GKGGIGKSTTTQNLVAALAE 28
>pdb|1G20|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
Length = 289
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 39 GKGGVGKSTTAVNLAVALAS 58
GKGG+GKSTT NL ALA
Sbjct: 10 GKGGIGKSTTTQNLVAALAE 29
>pdb|1XDB|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein
Asp129glu
pdb|1XDB|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein
Asp129glu
Length = 289
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 39 GKGGVGKSTTAVNLAVALAS 58
GKGG+GKSTT NL ALA
Sbjct: 9 GKGGIGKSTTTQNLVAALAE 28
>pdb|1XD8|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD8|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD9|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
pdb|1XD9|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
Length = 289
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 39 GKGGVGKSTTAVNLAVALAS 58
GKGG+GKSTT NL ALA
Sbjct: 9 GKGGIGKSTTTQNLVAALAE 28
>pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of The [4fe-4s]
Cluster Of The Nitrogenase Fe Protein
pdb|1DE0|B Chain B, Modulating The Midpoint Potential Of The [4fe-4s]
Cluster Of The Nitrogenase Fe Protein
pdb|1XCP|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein
Phe135trp With Mgadp Bound
pdb|1XCP|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein
Phe135trp With Mgadp Bound
pdb|1XCP|C Chain C, Crystal Structure Of The Nitrogenase Fe Protein
Phe135trp With Mgadp Bound
pdb|1XCP|D Chain D, Crystal Structure Of The Nitrogenase Fe Protein
Phe135trp With Mgadp Bound
Length = 289
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 39 GKGGVGKSTTAVNLAVALAS 58
GKGG+GKSTT NL ALA
Sbjct: 9 GKGGIGKSTTTQNLVAALAE 28
>pdb|1RW4|A Chain A, Nitrogenase Fe Protein L127 Deletion Variant
Length = 272
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 39 GKGGVGKSTTAVNLAVALAS 58
GKGG+GKSTT NL ALA
Sbjct: 10 GKGGIGKSTTTQNLVAALAE 29
>pdb|2YNM|A Chain A, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus
With Its Substrate Protochlorophyllide A
pdb|2YNM|B Chain B, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus
With Its Substrate Protochlorophyllide A
Length = 301
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Query: 33 VIAVASGKGGVGKSTTAVNLAVALA 57
VIAV GKGG+GKSTT+ NL+ A +
Sbjct: 36 VIAV-YGKGGIGKSTTSSNLSAAFS 59
>pdb|2XJ4|A Chain A, Structure Of The Bacterial Cell Division Regulator
Protein Mipz
Length = 286
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71
VI V + KGG GKST AV+L AL KV ++D D+
Sbjct: 6 VIVVGNEKGGAGKSTIAVHLVTALLYGGA-KVAVIDLDL 43
>pdb|2XIT|A Chain A, Crystal Structure Of Monomeric Mipz
pdb|2XIT|B Chain B, Crystal Structure Of Monomeric Mipz
Length = 294
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71
VI V + KGG GKST AV+L AL KV ++D D+
Sbjct: 6 VIVVGNEKGGAGKSTIAVHLVTALLYGGA-KVAVIDLDL 43
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75
G G GK+TTA LA K KVGL+ ADVY P+
Sbjct: 111 GVQGSGKTTTAGKLAY-FYKKRGYKVGLVAADVYRPA 146
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75
G G GK+TTA LA K KVGL+ ADVY P+
Sbjct: 104 GVQGSGKTTTAGKLAY-FYKKRGYKVGLVAADVYRPA 139
>pdb|2VED|A Chain A, Crystal Structure Of The Chimerical Mutant Capabk55m
Protein
pdb|2VED|B Chain B, Crystal Structure Of The Chimerical Mutant Capabk55m
Protein
Length = 271
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 7 IFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL 66
I + G+R F + D + I + S G G ST A NLAVA A + K +
Sbjct: 62 ISEKFRGIRSNIMFANPDSAVQS----IVITSEAPGAGMSTIAANLAVAYA-QAGYKTLI 116
Query: 67 LDADVYGPS 75
+D D+ P+
Sbjct: 117 VDGDMRKPT 125
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 22 SKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK 81
+K L+++ K + + G G GK+TTA LA + K LK L+ AD Y P+ +K
Sbjct: 89 AKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYI-QKRGLKPALIAADTYRPAAYEQLK 147
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 22 SKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK 81
+K L+++ K + + G G GK+TTA LA + K LK L+ AD Y P+ +K
Sbjct: 89 AKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYI-QKRGLKPALIAADTYRPAAYEQLK 147
>pdb|2R6A|A Chain A, Crystal Form Bh1
pdb|2R6A|B Chain B, Crystal Form Bh1
pdb|2R6E|A Chain A, Crystal Form B2
pdb|2R6E|B Chain B, Crystal Form B2
pdb|2R6C|A Chain A, Crystal Form Bh2
pdb|2R6C|B Chain B, Crystal Form Bh2
pdb|2R6C|C Chain C, Crystal Form Bh2
pdb|2R6C|D Chain D, Crystal Form Bh2
pdb|2R6C|E Chain E, Crystal Form Bh2
pdb|2R6C|F Chain F, Crystal Form Bh2
pdb|2R6D|A Chain A, Crystal Form B1
pdb|2R6D|B Chain B, Crystal Form B1
pdb|2R6D|C Chain C, Crystal Form B1
pdb|2R6D|D Chain D, Crystal Form B1
pdb|2R6D|E Chain E, Crystal Form B1
pdb|2R6D|F Chain F, Crystal Form B1
pdb|4ESV|A Chain A, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|B Chain B, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|C Chain C, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|D Chain D, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|E Chain E, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|F Chain F, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|G Chain G, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|H Chain H, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|I Chain I, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|J Chain J, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|K Chain K, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|L Chain L, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
Length = 454
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ---KPEV 88
D+I VA+ + VGK+ A+N+A +A+K V + ++ + M M + +
Sbjct: 204 DLIIVAA-RPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQN 262
Query: 89 TKDMKMVPIENYGVKCMSMGFLVPS-----SSPVVWRGPMVMSALRKMSREVDWGNLDIL 143
+ K+ P E++G M+MG L + +P + R + + R++ +E G + I
Sbjct: 263 LRTGKLTP-EDWGKLTMAMGSLSNAGIYIDDTPSI-RVSDIRAKCRRLKQESGLGMIVID 320
Query: 144 VIDMPPGTG 152
+ + G+G
Sbjct: 321 YLQLIQGSG 329
>pdb|2XJ9|A Chain A, Dimer Structure Of The Bacterial Cell Division Regulator
Mipz
pdb|2XJ9|B Chain B, Dimer Structure Of The Bacterial Cell Division Regulator
Mipz
Length = 286
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 33 VIAVASGKGGVGKSTTAVNLAVAL 56
VI V + KGG GKST AV+L AL
Sbjct: 6 VIVVGNEKGGAGKSTIAVHLVTAL 29
>pdb|2VYE|A Chain A, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYE|B Chain B, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYF|A Chain A, Crystal Structure Of The Dnac
pdb|2VYF|B Chain B, Crystal Structure Of The Dnac
Length = 454
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ---KPEV 88
D+I VA+ + VGK+ A+N+A +A+K V + ++ + M M + +
Sbjct: 204 DLIIVAA-RPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQN 262
Query: 89 TKDMKMVPIENYGVKCMSMGFLVPS-----SSPVVWRGPMVMSALRKMSREVDWGNLDIL 143
+ K+ P E++G M+MG L + +P + R + + R++ +E G + I
Sbjct: 263 LRTGKLTP-EDWGKLTMAMGSLSNAGIYIDDTPSI-RVSDIRAKCRRLKQESGLGMVVID 320
Query: 144 VIDMPPGTG 152
+ + G+G
Sbjct: 321 YLQLIQGSG 329
>pdb|4DZZ|A Chain A, Structure Of Parf-Adp, Crystal Form 1
pdb|4DZZ|B Chain B, Structure Of Parf-Adp, Crystal Form 1
pdb|4E03|A Chain A, Structure Of Parf-Adp Form 2
pdb|4E03|B Chain B, Structure Of Parf-Adp Form 2
pdb|4E07|A Chain A, Parf-Amppcp-C2221 Form
pdb|4E07|B Chain B, Parf-Amppcp-C2221 Form
pdb|4E09|A Chain A, Structure Of Parf-Amppcp, I422 Form
Length = 206
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
VI+ + KGG GK+T +N+A AL S+ + ++D D
Sbjct: 3 VISFLNPKGGSGKTTAVINIATAL-SRSGYNIAVVDTD 39
>pdb|3VND|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|C Chain C, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|D Chain D, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|E Chain E, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|F Chain F, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|G Chain G, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
pdb|3VND|H Chain H, Crystal Structure Of Tryptophan Synthase Alpha-subunit
From The Psychrophile Shewanella Frigidimarina K14-2
Length = 267
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 56 LASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSS 115
++++ Q K L A G VP + D PE++ + ++N G + +GF P S
Sbjct: 1 MSNRYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDN-GADALELGF--PFSD 57
Query: 116 PVVWRGPMVMSA-LRKMS 132
P+ GP++ A LR ++
Sbjct: 58 PLA-DGPVIQGANLRSLA 74
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPM 78
++ + +G GVGKST + NLA L SK + V +L +D+ S P+
Sbjct: 5 MLIILTGLPGVGKSTFSKNLAKIL-SKNNIDVIVLGSDLIRESFPV 49
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
Length = 259
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPM 78
+ + +G GVGKST + NLA L SK + V +L +D+ S P+
Sbjct: 13 LIILTGLPGVGKSTFSKNLAKIL-SKNNIDVIVLGSDLIRESFPV 56
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75
+ + +G G GK+T+ L L K + KV ++ ADVY P+
Sbjct: 101 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA 142
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75
+ + +G G GK+T+ L L K + KV ++ ADVY P+
Sbjct: 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA 143
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 GKGGVGKSTTAVNLAVALA 57
GKGGVGK+T A +AV LA
Sbjct: 334 GKGGVGKTTMAAAIAVRLA 352
>pdb|1CP2|A Chain A, Nitrogenase Iron Protein From Clostridium Pasteurianum
pdb|1CP2|B Chain B, Nitrogenase Iron Protein From Clostridium Pasteurianum
Length = 269
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 39 GKGGVGKSTTAVNLAVALAS 58
GKGG+GKSTT NL L +
Sbjct: 8 GKGGIGKSTTTQNLTSGLHA 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,457,602
Number of Sequences: 62578
Number of extensions: 337070
Number of successful extensions: 875
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 61
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)