Query 022525
Match_columns 295
No_of_seqs 130 out of 1611
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3022 Predicted ATPase, nucl 100.0 3.8E-41 8.3E-46 274.2 22.9 253 26-279 42-297 (300)
2 PRK11670 antiporter inner memb 100.0 3.7E-40 8E-45 291.3 24.6 253 27-281 103-357 (369)
3 TIGR01969 minD_arch cell divis 100.0 2.9E-36 6.4E-41 256.0 19.1 228 32-279 1-236 (251)
4 PRK13232 nifH nitrogenase redu 100.0 3.5E-35 7.6E-40 252.0 19.6 233 31-277 1-248 (273)
5 CHL00175 minD septum-site dete 100.0 6.6E-35 1.4E-39 251.5 20.3 234 27-277 11-256 (281)
6 PRK13233 nifH nitrogenase redu 100.0 5.7E-34 1.2E-38 244.9 18.6 230 30-277 1-251 (275)
7 TIGR01968 minD_bact septum sit 100.0 1.9E-33 4.2E-38 240.1 20.0 228 31-276 1-239 (261)
8 PRK13235 nifH nitrogenase redu 100.0 3.2E-33 7E-38 240.0 21.4 232 31-276 1-249 (274)
9 TIGR03371 cellulose_yhjQ cellu 100.0 4.8E-34 1E-38 241.8 15.9 233 31-277 1-245 (246)
10 PRK10818 cell division inhibit 100.0 1.3E-33 2.8E-38 242.3 18.1 231 30-277 1-250 (270)
11 cd02040 NifH NifH gene encodes 100.0 2.8E-33 6.1E-38 240.3 19.3 235 31-279 1-251 (270)
12 PRK13185 chlL protochlorophyll 100.0 3.7E-33 8.1E-38 239.3 19.1 227 30-278 1-250 (270)
13 CHL00072 chlL photochlorophyll 100.0 1E-32 2.2E-37 237.3 21.4 225 34-278 3-248 (290)
14 COG2894 MinD Septum formation 100.0 2.1E-33 4.6E-38 221.3 14.1 234 30-280 1-252 (272)
15 PRK13236 nitrogenase reductase 100.0 1E-32 2.2E-37 238.5 19.6 235 29-278 4-255 (296)
16 TIGR01287 nifH nitrogenase iro 100.0 1.3E-32 2.7E-37 236.6 18.7 234 32-279 1-250 (275)
17 PF06564 YhjQ: YhjQ protein; 100.0 2.9E-33 6.2E-38 230.4 14.0 231 31-279 1-241 (243)
18 PRK13869 plasmid-partitioning 100.0 7.3E-33 1.6E-37 248.3 16.9 235 28-275 118-389 (405)
19 PHA02518 ParA-like protein; Pr 100.0 1.2E-32 2.6E-37 227.9 16.9 204 32-278 1-210 (211)
20 PRK10037 cell division protein 100.0 4.6E-33 1E-37 235.8 14.5 229 31-281 1-243 (250)
21 COG0455 flhG Antiactivator of 100.0 8E-33 1.7E-37 232.2 15.3 236 30-282 1-247 (262)
22 PRK13231 nitrogenase reductase 100.0 8.1E-33 1.7E-37 236.4 15.4 233 31-279 2-244 (264)
23 PRK13234 nifH nitrogenase redu 100.0 3.7E-32 8E-37 234.9 18.7 230 31-278 4-253 (295)
24 PRK13230 nitrogenase reductase 100.0 3.5E-32 7.6E-37 234.2 18.5 236 31-280 1-252 (279)
25 cd02032 Bchl_like This family 100.0 2.2E-32 4.7E-37 234.2 16.6 225 33-279 2-249 (267)
26 TIGR01281 DPOR_bchL light-inde 100.0 3.8E-32 8.3E-37 232.8 17.0 227 33-279 2-249 (268)
27 PHA02519 plasmid partition pro 100.0 2.7E-31 5.9E-36 236.1 19.1 258 4-275 81-378 (387)
28 COG1192 Soj ATPases involved i 100.0 9.5E-32 2.1E-36 229.3 14.6 238 30-280 1-257 (259)
29 PRK13705 plasmid-partitioning 100.0 1.6E-31 3.4E-36 238.2 16.4 239 27-277 102-380 (388)
30 TIGR03453 partition_RepA plasm 100.0 2.2E-31 4.8E-36 238.8 16.3 237 28-277 101-374 (387)
31 cd02037 MRP-like MRP (Multiple 100.0 1.8E-30 3.9E-35 207.3 18.4 169 33-241 1-169 (169)
32 TIGR03815 CpaE_hom_Actino heli 100.0 2.9E-30 6.2E-35 226.6 21.0 217 28-271 90-320 (322)
33 cd02036 MinD Bacterial cell di 100.0 1.8E-30 3.9E-35 209.3 16.6 179 33-266 1-179 (179)
34 cd02117 NifH_like This family 100.0 1.6E-29 3.4E-34 209.1 17.2 193 32-240 1-212 (212)
35 TIGR02016 BchX chlorophyllide 100.0 9.5E-29 2.1E-33 213.2 21.5 230 32-278 1-253 (296)
36 COG0489 Mrp ATPases involved i 100.0 1.9E-28 4.1E-33 207.6 19.8 224 7-244 35-262 (265)
37 cd02033 BchX Chlorophyllide re 100.0 8E-28 1.7E-32 208.2 21.5 228 27-278 27-277 (329)
38 TIGR03018 pepcterm_TyrKin exop 100.0 1.7E-28 3.8E-33 202.0 14.6 189 4-201 8-207 (207)
39 COG3640 CooC CO dehydrogenase 100.0 3.2E-27 7E-32 189.1 19.3 222 33-276 2-253 (255)
40 COG1149 MinD superfamily P-loo 100.0 1.2E-27 2.5E-32 195.7 16.1 223 31-275 1-282 (284)
41 TIGR03029 EpsG chain length de 100.0 5.8E-28 1.3E-32 207.5 14.8 186 5-202 81-274 (274)
42 TIGR01007 eps_fam capsular exo 100.0 7.2E-28 1.6E-32 198.1 13.9 184 9-206 1-193 (204)
43 PRK13849 putative crown gall t 100.0 2.2E-27 4.8E-32 197.4 16.2 206 31-274 1-216 (231)
44 cd03110 Fer4_NifH_child This p 99.9 2.3E-26 5E-31 185.3 16.7 178 33-238 1-179 (179)
45 PF00142 Fer4_NifH: 4Fe-4S iro 99.9 5.1E-25 1.1E-29 180.9 14.7 230 32-278 1-250 (273)
46 TIGR01005 eps_transp_fam exopo 99.9 1.7E-25 3.8E-30 216.9 13.4 188 6-205 525-720 (754)
47 COG4963 CpaE Flp pilus assembl 99.9 1.1E-24 2.4E-29 187.0 15.9 242 26-281 99-349 (366)
48 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 1.8E-25 4E-30 182.5 9.7 188 34-244 1-194 (195)
49 PRK11519 tyrosine kinase; Prov 99.9 7.8E-25 1.7E-29 210.1 15.6 188 6-205 505-700 (719)
50 PRK09841 cryptic autophosphory 99.9 7.4E-25 1.6E-29 210.5 15.4 189 5-205 509-705 (726)
51 COG1348 NifH Nitrogenase subun 99.9 4.3E-24 9.4E-29 170.2 15.8 230 31-277 1-250 (278)
52 cd03111 CpaE_like This protein 99.9 2.5E-22 5.5E-27 147.2 12.5 102 33-202 1-106 (106)
53 PF07015 VirC1: VirC1 protein; 99.9 2.7E-22 5.9E-27 162.8 13.9 181 31-250 1-189 (231)
54 cd02038 FleN-like FleN is a me 99.9 6.9E-22 1.5E-26 152.3 12.6 107 33-204 1-108 (139)
55 cd00550 ArsA_ATPase Oxyanion-t 99.8 2.7E-21 5.9E-26 163.7 8.9 205 34-240 2-239 (254)
56 cd02042 ParA ParA and ParB of 99.8 1.9E-20 4.2E-25 137.1 12.3 99 33-201 1-104 (104)
57 PF09140 MipZ: ATPase MipZ; I 99.8 5.2E-21 1.1E-25 155.8 5.1 134 32-177 1-134 (261)
58 cd02035 ArsA ArsA ATPase funct 99.8 2.3E-20 5E-25 154.7 9.0 162 34-205 1-182 (217)
59 PF13614 AAA_31: AAA domain; P 99.8 2.6E-20 5.7E-25 146.7 4.6 145 32-179 1-156 (157)
60 PF02374 ArsA_ATPase: Anion-tr 99.7 2.3E-16 5.1E-21 136.5 9.7 198 34-239 3-285 (305)
61 COG0003 ArsA Predicted ATPase 99.6 2E-14 4.4E-19 124.1 13.1 166 32-206 2-249 (322)
62 cd03114 ArgK-like The function 99.6 1E-13 2.2E-18 107.6 13.9 146 34-204 2-148 (148)
63 TIGR00064 ftsY signal recognit 99.5 4.2E-13 9.1E-18 114.4 16.7 165 30-234 71-248 (272)
64 cd02034 CooC The accessory pro 99.5 6.1E-14 1.3E-18 104.0 8.9 112 37-170 4-115 (116)
65 PRK10867 signal recognition pa 99.5 6.7E-13 1.5E-17 119.4 15.8 165 31-234 100-271 (433)
66 PRK00090 bioD dithiobiotin syn 99.5 1.9E-13 4E-18 113.9 10.6 191 34-240 2-202 (222)
67 PRK13886 conjugal transfer pro 99.5 1.1E-12 2.3E-17 108.7 14.1 49 30-79 1-49 (241)
68 TIGR00959 ffh signal recogniti 99.5 3.6E-12 7.8E-17 114.6 17.8 166 31-234 98-270 (428)
69 cd01983 Fer4_NifH The Fer4_Nif 99.5 1.3E-12 2.9E-17 93.8 11.6 93 36-201 3-99 (99)
70 TIGR01425 SRP54_euk signal rec 99.4 6.9E-12 1.5E-16 112.2 16.4 165 31-234 100-270 (429)
71 PRK01077 cobyrinic acid a,c-di 99.4 9.6E-12 2.1E-16 113.9 17.6 172 31-244 3-185 (451)
72 TIGR00347 bioD dethiobiotin sy 99.4 1.2E-12 2.5E-17 104.1 9.4 157 36-201 2-166 (166)
73 cd03115 SRP The signal recogni 99.4 1.3E-11 2.8E-16 98.8 15.5 161 35-234 3-170 (173)
74 PRK13768 GTPase; Provisional 99.4 1.9E-12 4.2E-17 109.6 11.0 161 30-205 1-174 (253)
75 PRK00771 signal recognition pa 99.4 1E-11 2.2E-16 112.1 16.0 164 30-234 94-263 (437)
76 PRK10416 signal recognition pa 99.4 2.6E-11 5.6E-16 105.6 16.5 166 30-234 113-290 (318)
77 PRK11889 flhF flagellar biosyn 99.4 2.2E-11 4.7E-16 106.8 15.7 160 31-234 241-408 (436)
78 KOG2825 Putative arsenite-tran 99.4 3E-12 6.4E-17 104.0 9.2 172 31-206 18-266 (323)
79 PRK12374 putative dithiobiotin 99.4 5E-11 1.1E-15 99.8 16.4 194 30-243 1-206 (231)
80 PRK12726 flagellar biosynthesi 99.3 1.6E-10 3.4E-15 101.2 16.0 161 31-234 206-373 (407)
81 PRK14493 putative bifunctional 99.3 1.8E-10 3.8E-15 98.1 15.9 226 31-282 1-256 (274)
82 PF13500 AAA_26: AAA domain; P 99.3 2.6E-11 5.7E-16 99.2 10.3 186 32-244 1-196 (199)
83 TIGR00313 cobQ cobyric acid sy 99.3 2.5E-10 5.4E-15 104.9 16.7 196 34-243 1-227 (475)
84 PRK13505 formate--tetrahydrofo 99.2 2.9E-10 6.3E-15 103.1 15.7 75 8-86 31-109 (557)
85 COG0132 BioD Dethiobiotin synt 99.2 2.9E-10 6.3E-15 93.0 13.1 195 30-245 1-209 (223)
86 PRK12727 flagellar biosynthesi 99.2 6.6E-10 1.4E-14 101.2 15.3 158 30-234 349-515 (559)
87 PRK12724 flagellar biosynthesi 99.2 1E-09 2.2E-14 97.6 16.1 158 31-234 223-390 (432)
88 cd03109 DTBS Dethiobiotin synt 99.2 6.3E-10 1.4E-14 84.9 12.8 124 37-238 5-134 (134)
89 PRK05703 flhF flagellar biosyn 99.2 3.3E-10 7.2E-15 102.5 12.6 160 31-234 221-388 (424)
90 PRK05632 phosphate acetyltrans 99.2 5.5E-10 1.2E-14 107.2 14.8 178 30-244 1-200 (684)
91 PF10609 ParA: ParA/MinD ATPas 99.2 9.6E-11 2.1E-15 79.5 6.7 78 141-218 2-79 (81)
92 COG0541 Ffh Signal recognition 99.2 1.5E-09 3.2E-14 95.6 15.3 215 32-294 100-327 (451)
93 PRK00784 cobyric acid synthase 99.1 1.7E-09 3.6E-14 100.1 15.6 200 30-243 1-230 (488)
94 TIGR00379 cobB cobyrinic acid 99.1 6E-09 1.3E-13 95.4 17.7 171 34-244 2-182 (449)
95 PF00448 SRP54: SRP54-type pro 99.1 2.9E-09 6.2E-14 86.5 13.3 173 31-243 1-179 (196)
96 TIGR00750 lao LAO/AO transport 99.1 6.1E-09 1.3E-13 90.5 15.5 151 30-205 33-184 (300)
97 PRK14974 cell division protein 99.1 5.1E-09 1.1E-13 91.6 14.9 165 31-234 140-310 (336)
98 COG1703 ArgK Putative periplas 99.1 6.5E-09 1.4E-13 87.3 14.3 150 28-204 48-200 (323)
99 COG1797 CobB Cobyrinic acid a, 99.1 1.2E-08 2.5E-13 90.0 16.6 168 33-244 2-183 (451)
100 PRK09435 membrane ATPase/prote 99.0 7.6E-09 1.7E-13 90.3 14.4 148 30-205 55-206 (332)
101 PRK06731 flhF flagellar biosyn 99.0 2.3E-08 5E-13 84.9 15.7 161 31-234 75-242 (270)
102 TIGR00345 arsA arsenite-activa 99.0 4.3E-09 9.3E-14 90.7 11.3 73 166-238 191-265 (284)
103 PRK12723 flagellar biosynthesi 99.0 2.3E-08 5E-13 89.1 15.8 160 31-234 174-343 (388)
104 PF03308 ArgK: ArgK protein; 98.9 3.3E-09 7E-14 87.9 6.2 146 30-204 28-178 (266)
105 TIGR03499 FlhF flagellar biosy 98.9 4.7E-09 1E-13 90.3 7.3 42 30-73 193-236 (282)
106 PRK06278 cobyrinic acid a,c-di 98.8 3.4E-07 7.4E-12 83.7 18.5 186 13-238 219-418 (476)
107 PRK14723 flhF flagellar biosyn 98.8 1.4E-07 3.1E-12 90.0 15.6 162 31-234 185-354 (767)
108 PRK14722 flhF flagellar biosyn 98.7 1.8E-07 3.9E-12 82.8 12.6 162 31-234 137-312 (374)
109 PRK13896 cobyrinic acid a,c-di 98.6 1.3E-06 2.8E-11 79.1 15.6 170 31-244 1-179 (433)
110 COG1419 FlhF Flagellar GTP-bin 98.6 3.5E-07 7.6E-12 80.6 11.3 140 31-204 203-349 (407)
111 KOG1532 GTPase XAB1, interacts 98.6 2.5E-07 5.4E-12 76.7 9.3 162 32-205 19-193 (366)
112 COG0552 FtsY Signal recognitio 98.6 3.4E-07 7.4E-12 78.4 9.2 164 30-234 138-315 (340)
113 PRK06995 flhF flagellar biosyn 98.5 1.5E-06 3.3E-11 79.4 12.9 160 31-234 256-422 (484)
114 KOG0780 Signal recognition par 98.4 2.1E-06 4.5E-11 74.6 10.4 153 28-209 98-256 (483)
115 cd04170 EF-G_bact Elongation f 98.4 3.8E-06 8.2E-11 72.0 12.0 95 138-241 62-157 (268)
116 KOG0781 Signal recognition par 98.4 2.1E-06 4.5E-11 76.5 9.7 157 28-204 375-541 (587)
117 COG1492 CobQ Cobyric acid synt 98.4 1.7E-06 3.8E-11 77.8 8.7 200 32-244 2-231 (486)
118 PF03029 ATP_bind_1: Conserved 98.3 4.4E-07 9.5E-12 76.1 2.4 38 39-77 3-40 (238)
119 cd04169 RF3 RF3 subfamily. Pe 98.2 1.4E-05 3E-10 68.3 10.6 93 138-239 69-162 (267)
120 cd04168 TetM_like Tet(M)-like 98.1 1.5E-05 3.3E-10 66.8 9.2 92 138-238 62-154 (237)
121 cd00477 FTHFS Formyltetrahydro 98.1 6.5E-06 1.4E-10 74.4 6.2 53 30-86 37-92 (524)
122 cd01886 EF-G Elongation factor 98.1 2.9E-05 6.3E-10 66.4 9.4 94 138-240 62-156 (270)
123 COG1341 Predicted GTPase or GT 98.0 6.2E-05 1.4E-09 66.3 10.0 43 32-76 74-116 (398)
124 PRK14721 flhF flagellar biosyn 98.0 0.0004 8.8E-09 62.7 15.5 160 30-234 190-357 (420)
125 PRK13506 formate--tetrahydrofo 98.0 1.5E-05 3.3E-10 72.8 6.3 53 30-86 53-108 (578)
126 PRK00741 prfC peptide chain re 97.9 0.00011 2.5E-09 68.6 10.6 92 138-238 77-169 (526)
127 cd01884 EF_Tu EF-Tu subfamily. 97.9 9.4E-05 2E-09 60.2 8.6 68 138-205 63-130 (195)
128 KOG1533 Predicted GTPase [Gene 97.8 1.8E-05 3.8E-10 64.5 4.1 41 39-80 9-49 (290)
129 PRK12740 elongation factor G; 97.8 0.00019 4.2E-09 69.5 11.8 93 138-239 58-151 (668)
130 cd04167 Snu114p Snu114p subfam 97.8 0.00016 3.6E-09 59.6 9.5 67 138-205 69-135 (213)
131 PLN02974 adenosylmethionine-8- 97.8 0.00047 1E-08 67.6 13.7 63 138-202 183-252 (817)
132 COG0857 Pta BioD-like N-termin 97.8 0.00029 6.4E-09 62.1 11.2 194 30-244 1-207 (354)
133 cd04166 CysN_ATPS CysN_ATPS su 97.7 0.00021 4.5E-09 58.8 8.9 68 138-205 75-142 (208)
134 cd00881 GTP_translation_factor 97.7 0.00017 3.8E-09 57.8 8.1 66 139-205 61-126 (189)
135 PRK08233 hypothetical protein; 97.7 0.0002 4.3E-09 57.4 8.4 38 31-72 3-40 (182)
136 cd04165 GTPBP1_like GTPBP1-lik 97.7 0.00043 9.4E-09 57.6 10.4 67 138-205 82-150 (224)
137 COG1159 Era GTPase [General fu 97.7 0.00032 6.9E-09 59.5 9.4 111 33-205 8-126 (298)
138 TIGR00503 prfC peptide chain r 97.7 0.00029 6.3E-09 65.9 10.1 92 138-238 78-170 (527)
139 COG0050 TufB GTPases - transla 97.7 6.5E-05 1.4E-09 63.2 5.2 139 138-289 73-212 (394)
140 PF03205 MobB: Molybdopterin g 97.6 0.00017 3.7E-09 55.3 6.6 42 32-75 1-43 (140)
141 TIGR00490 aEF-2 translation el 97.6 0.00049 1.1E-08 67.1 10.8 67 138-205 84-150 (720)
142 cd01885 EF2 EF2 (for archaea a 97.6 0.00069 1.5E-08 56.2 10.1 67 138-205 71-137 (222)
143 cd01894 EngA1 EngA1 subfamily. 97.5 0.00073 1.6E-08 52.3 9.1 67 138-205 43-117 (157)
144 cd03112 CobW_like The function 97.5 0.002 4.4E-08 50.5 10.9 35 35-72 3-37 (158)
145 cd04163 Era Era subfamily. Er 97.5 0.0015 3.3E-08 50.8 10.2 67 138-205 49-123 (168)
146 COG1763 MobB Molybdopterin-gua 97.4 0.0011 2.3E-08 51.9 8.7 42 30-73 1-42 (161)
147 PRK00089 era GTPase Era; Revie 97.4 0.0018 3.8E-08 56.2 11.1 67 138-205 51-125 (292)
148 PTZ00141 elongation factor 1- 97.4 0.00054 1.2E-08 62.9 7.8 68 138-205 83-157 (446)
149 PRK00007 elongation factor G; 97.4 0.0006 1.3E-08 66.2 8.2 93 138-239 73-166 (693)
150 PF01583 APS_kinase: Adenylyls 97.4 0.0004 8.8E-09 54.0 5.5 42 31-74 2-43 (156)
151 cd03116 MobB Molybdenum is an 97.4 0.00052 1.1E-08 53.8 6.2 41 31-73 1-41 (159)
152 TIGR00176 mobB molybdopterin-g 97.4 0.00044 9.5E-09 54.0 5.7 38 33-72 1-38 (155)
153 cd01120 RecA-like_NTPases RecA 97.4 0.00064 1.4E-08 53.0 6.7 37 36-73 3-39 (165)
154 cd01891 TypA_BipA TypA (tyrosi 97.3 0.00081 1.8E-08 54.6 7.4 67 138-205 63-129 (194)
155 COG1160 Predicted GTPases [Gen 97.3 0.0033 7.2E-08 56.5 11.5 66 138-205 49-124 (444)
156 PRK14494 putative molybdopteri 97.3 0.00051 1.1E-08 57.0 6.0 38 31-70 1-38 (229)
157 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.0011 2.5E-08 51.6 7.5 34 34-69 5-38 (159)
158 PRK00093 GTP-binding protein D 97.3 0.0017 3.7E-08 59.6 10.0 67 138-205 47-121 (435)
159 PRK12739 elongation factor G; 97.3 0.0011 2.4E-08 64.4 8.9 93 138-239 71-164 (691)
160 cd01890 LepA LepA subfamily. 97.3 0.002 4.3E-08 51.3 8.8 67 138-205 65-131 (179)
161 PRK10218 GTP-binding protein; 97.3 0.0026 5.6E-08 60.5 10.8 67 138-205 66-132 (607)
162 cd01125 repA Hexameric Replica 97.3 0.00063 1.4E-08 57.2 6.1 41 33-73 2-53 (239)
163 TIGR00484 EF-G translation elo 97.3 0.0043 9.4E-08 60.4 12.5 93 138-239 73-166 (689)
164 PLN03127 Elongation factor Tu; 97.3 0.0032 6.9E-08 57.9 10.9 68 138-205 122-189 (447)
165 COG0529 CysC Adenylylsulfate k 97.3 0.00068 1.5E-08 53.1 5.5 51 29-81 21-71 (197)
166 cd04171 SelB SelB subfamily. 97.2 0.0015 3.2E-08 51.0 7.4 67 139-205 50-116 (164)
167 cd01394 radB RadB. The archaea 97.2 0.00077 1.7E-08 55.8 6.1 41 31-73 19-59 (218)
168 TIGR00708 cobA cob(I)alamin ad 97.2 0.0022 4.8E-08 50.7 8.1 38 31-71 6-43 (173)
169 PRK00889 adenylylsulfate kinas 97.2 0.00092 2E-08 53.3 6.0 40 31-72 4-43 (175)
170 cd01883 EF1_alpha Eukaryotic e 97.2 0.00063 1.4E-08 56.4 5.2 68 138-205 75-149 (219)
171 PRK00049 elongation factor Tu; 97.2 0.004 8.8E-08 56.4 10.6 68 138-205 73-140 (396)
172 PLN03126 Elongation factor Tu; 97.1 0.0037 8.1E-08 57.8 9.9 68 138-205 142-209 (478)
173 PRK04296 thymidine kinase; Pro 97.1 0.0018 3.8E-08 52.5 6.8 33 34-67 4-36 (190)
174 PRK07667 uridine kinase; Provi 97.1 0.0013 2.8E-08 53.4 6.1 39 32-72 18-56 (193)
175 KOG1534 Putative transcription 97.1 0.0015 3.1E-08 52.7 6.0 43 31-74 2-44 (273)
176 TIGR00436 era GTP-binding prot 97.1 0.0069 1.5E-07 51.9 10.7 66 138-205 46-119 (270)
177 smart00382 AAA ATPases associa 97.1 0.0017 3.6E-08 48.9 6.2 40 32-73 3-42 (148)
178 PRK09361 radB DNA repair and r 97.1 0.0012 2.6E-08 55.0 5.7 38 31-70 23-60 (225)
179 PRK14495 putative molybdopteri 97.1 0.0013 2.8E-08 59.3 6.1 40 31-72 1-40 (452)
180 cd04110 Rab35 Rab35 subfamily. 97.0 0.012 2.5E-07 48.0 11.3 66 139-205 54-122 (199)
181 TIGR02012 tigrfam_recA protein 97.0 0.0016 3.4E-08 56.9 6.4 40 31-72 55-94 (321)
182 KOG0635 Adenosine 5'-phosphosu 97.0 0.0015 3.3E-08 49.7 5.4 54 29-84 29-82 (207)
183 PLN00043 elongation factor 1-a 97.0 0.0022 4.9E-08 58.9 7.6 68 138-205 83-157 (447)
184 PRK05973 replicative DNA helic 97.0 0.0014 3E-08 54.8 5.5 41 32-73 64-104 (237)
185 smart00175 RAB Rab subfamily o 97.0 0.0083 1.8E-07 46.7 9.7 66 139-205 48-117 (164)
186 cd00880 Era_like Era (E. coli 97.0 0.0062 1.3E-07 46.7 8.9 66 139-205 44-116 (163)
187 PRK06696 uridine kinase; Valid 97.0 0.0018 4E-08 53.8 6.0 41 31-73 22-62 (223)
188 PTZ00416 elongation factor 2; 97.0 0.0046 1E-07 61.3 9.6 67 138-205 90-156 (836)
189 TIGR00073 hypB hydrogenase acc 96.9 0.023 5E-07 46.6 12.3 39 31-72 22-60 (207)
190 TIGR01394 TypA_BipA GTP-bindin 96.9 0.0042 9.1E-08 59.1 8.8 67 138-205 62-128 (594)
191 COG2403 Predicted GTPase [Gene 96.9 0.017 3.7E-07 50.6 11.4 38 31-69 126-163 (449)
192 cd01124 KaiC KaiC is a circadi 96.9 0.0017 3.7E-08 52.1 5.2 38 35-73 2-39 (187)
193 PRK07952 DNA replication prote 96.9 0.0016 3.4E-08 54.8 5.1 35 34-69 101-135 (244)
194 PRK06067 flagellar accessory p 96.9 0.0042 9.1E-08 52.0 7.5 40 31-72 25-64 (234)
195 PF02606 LpxK: Tetraacyldisacc 96.9 0.013 2.9E-07 51.5 10.8 42 31-73 35-77 (326)
196 cd01867 Rab8_Rab10_Rab13_like 96.9 0.019 4E-07 45.2 10.8 67 138-205 50-120 (167)
197 cd00154 Rab Rab family. Rab G 96.9 0.013 2.8E-07 45.0 9.8 67 138-205 47-117 (159)
198 COG1066 Sms Predicted ATP-depe 96.9 0.002 4.4E-08 57.1 5.6 37 33-71 94-130 (456)
199 cd04127 Rab27A Rab27a subfamil 96.8 0.02 4.4E-07 45.4 11.0 67 138-205 61-132 (180)
200 TIGR01618 phage_P_loop phage n 96.8 0.0046 9.9E-08 51.1 7.2 30 35-72 15-44 (220)
201 cd01864 Rab19 Rab19 subfamily. 96.8 0.012 2.7E-07 46.0 9.6 66 139-205 51-120 (165)
202 PRK12317 elongation factor 1-a 96.8 0.006 1.3E-07 55.9 8.8 68 138-205 82-151 (425)
203 cd04106 Rab23_lke Rab23-like s 96.8 0.011 2.4E-07 45.9 9.0 67 138-205 49-118 (162)
204 PRK03846 adenylylsulfate kinas 96.8 0.003 6.5E-08 51.5 5.9 41 31-73 24-64 (198)
205 CHL00071 tufA elongation facto 96.8 0.0085 1.8E-07 54.6 9.2 68 138-205 73-140 (409)
206 cd01882 BMS1 Bms1. Bms1 is an 96.8 0.016 3.5E-07 48.2 10.2 64 139-205 82-145 (225)
207 PRK12736 elongation factor Tu; 96.8 0.016 3.4E-07 52.6 10.9 68 138-205 73-140 (394)
208 cd01866 Rab2 Rab2 subfamily. 96.8 0.02 4.4E-07 45.0 10.3 65 140-205 53-121 (168)
209 PRK15453 phosphoribulokinase; 96.7 0.0035 7.6E-08 53.4 5.9 43 30-74 4-46 (290)
210 TIGR00485 EF-Tu translation el 96.7 0.011 2.4E-07 53.6 9.6 68 138-205 73-140 (394)
211 cd04139 RalA_RalB RalA/RalB su 96.7 0.036 7.8E-07 43.0 11.4 67 138-205 46-117 (164)
212 PF00009 GTP_EFTU: Elongation 96.7 0.0023 5E-08 51.6 4.6 67 138-205 68-134 (188)
213 COG3598 RepA RecA-family ATPas 96.7 0.0047 1E-07 53.1 6.5 43 33-75 90-141 (402)
214 TIGR02237 recomb_radB DNA repa 96.7 0.0037 8E-08 51.3 5.9 39 31-71 12-50 (209)
215 PRK07560 elongation factor EF- 96.7 0.0053 1.1E-07 60.1 7.7 67 138-205 85-151 (731)
216 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.7 0.026 5.7E-07 44.1 10.4 66 139-205 50-119 (166)
217 PHA02542 41 41 helicase; Provi 96.7 0.0028 6.1E-08 58.5 5.3 42 32-74 190-231 (473)
218 smart00173 RAS Ras subfamily o 96.7 0.05 1.1E-06 42.4 11.8 67 138-205 46-117 (164)
219 PRK15494 era GTPase Era; Provi 96.7 0.019 4.1E-07 51.0 10.3 66 138-205 98-172 (339)
220 PRK05306 infB translation init 96.7 0.0099 2.1E-07 58.2 9.1 66 139-205 336-401 (787)
221 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.0038 8.1E-08 53.2 5.5 39 32-71 36-74 (259)
222 PRK05986 cob(I)alamin adenolsy 96.6 0.0099 2.1E-07 47.8 7.6 37 31-70 23-59 (191)
223 cd04118 Rab24 Rab24 subfamily. 96.6 0.045 9.8E-07 44.1 11.6 66 139-205 49-117 (193)
224 cd01860 Rab5_related Rab5-rela 96.6 0.032 7E-07 43.4 10.4 68 138-205 48-118 (163)
225 cd04113 Rab4 Rab4 subfamily. 96.6 0.021 4.6E-07 44.4 9.4 67 138-205 47-117 (161)
226 PRK05433 GTP-binding protein L 96.6 0.01 2.2E-07 56.6 8.8 67 138-205 72-138 (600)
227 PRK12735 elongation factor Tu; 96.6 0.024 5.2E-07 51.4 10.8 68 138-205 73-140 (396)
228 KOG2749 mRNA cleavage and poly 96.6 0.02 4.3E-07 49.9 9.5 44 31-76 103-146 (415)
229 cd04107 Rab32_Rab38 Rab38/Rab3 96.6 0.13 2.9E-06 41.8 14.3 67 138-205 48-122 (201)
230 PRK05506 bifunctional sulfate 96.6 0.0045 9.8E-08 59.6 6.4 68 138-205 102-169 (632)
231 cd04137 RheB Rheb (Ras Homolog 96.6 0.026 5.6E-07 44.9 9.9 66 139-205 48-118 (180)
232 PRK10512 selenocysteinyl-tRNA- 96.6 0.0069 1.5E-07 57.9 7.5 66 140-205 51-116 (614)
233 cd02028 UMPK_like Uridine mono 96.6 0.0037 8.1E-08 50.1 4.8 38 34-73 2-39 (179)
234 cd01868 Rab11_like Rab11-like. 96.6 0.032 6.9E-07 43.6 10.0 68 138-205 50-120 (165)
235 PF13479 AAA_24: AAA domain 96.5 0.015 3.2E-07 48.0 8.3 29 35-72 6-34 (213)
236 cd04125 RabA_like RabA-like su 96.5 0.054 1.2E-06 43.5 11.5 68 138-205 47-117 (188)
237 cd04122 Rab14 Rab14 subfamily. 96.5 0.042 9.1E-07 43.0 10.6 68 138-205 49-119 (166)
238 PRK10463 hydrogenase nickel in 96.5 0.031 6.6E-07 48.1 10.2 40 31-73 104-143 (290)
239 PLN00116 translation elongatio 96.5 0.01 2.2E-07 59.0 8.4 68 138-206 96-163 (843)
240 PRK14491 putative bifunctional 96.5 0.011 2.5E-07 56.2 8.3 41 30-72 9-49 (597)
241 cd02027 APSK Adenosine 5'-phos 96.5 0.0041 8.9E-08 48.2 4.4 37 36-73 3-39 (149)
242 cd01122 GP4d_helicase GP4d_hel 96.5 0.005 1.1E-07 52.7 5.3 39 33-72 31-70 (271)
243 TIGR01393 lepA GTP-binding pro 96.5 0.013 2.7E-07 56.0 8.4 67 138-205 68-134 (595)
244 cd04148 RGK RGK subfamily. Th 96.5 0.084 1.8E-06 43.8 12.4 65 138-205 48-118 (221)
245 PF02421 FeoB_N: Ferrous iron 96.5 0.012 2.6E-07 45.8 6.8 93 138-240 45-145 (156)
246 TIGR00682 lpxK tetraacyldisacc 96.4 0.0071 1.5E-07 52.7 6.0 42 31-73 28-70 (311)
247 PF13245 AAA_19: Part of AAA d 96.4 0.008 1.7E-07 40.8 5.0 34 34-68 12-49 (76)
248 cd04112 Rab26 Rab26 subfamily. 96.4 0.034 7.3E-07 44.9 9.7 66 139-205 49-118 (191)
249 TIGR03594 GTPase_EngA ribosome 96.4 0.014 3E-07 53.5 8.2 67 138-205 45-119 (429)
250 CHL00189 infB translation init 96.4 0.012 2.6E-07 57.1 7.9 67 138-205 293-359 (742)
251 TIGR03594 GTPase_EngA ribosome 96.4 0.041 8.8E-07 50.5 11.2 66 139-205 219-295 (429)
252 cd04160 Arfrp1 Arfrp1 subfamil 96.4 0.047 1E-06 42.6 10.1 67 138-205 48-119 (167)
253 cd02029 PRK_like Phosphoribulo 96.4 0.006 1.3E-07 51.6 5.0 40 33-74 1-40 (277)
254 PRK00652 lpxK tetraacyldisacch 96.4 0.0068 1.5E-07 53.2 5.6 42 31-73 49-91 (325)
255 PLN00023 GTP-binding protein; 96.4 0.28 6E-06 43.0 15.3 94 138-231 81-189 (334)
256 cd00878 Arf_Arl Arf (ADP-ribos 96.4 0.032 7E-07 43.2 9.0 66 139-205 42-112 (158)
257 PF07755 DUF1611: Protein of u 96.4 0.062 1.3E-06 46.4 11.1 166 30-238 111-294 (301)
258 PRK03003 GTP-binding protein D 96.4 0.021 4.6E-07 53.1 9.1 67 138-205 84-158 (472)
259 cd04101 RabL4 RabL4 (Rab-like4 96.3 0.031 6.8E-07 43.5 8.8 67 138-205 50-119 (164)
260 cd04108 Rab36_Rab34 Rab34/Rab3 96.3 0.024 5.1E-07 44.9 8.1 67 139-205 48-118 (170)
261 cd00984 DnaB_C DnaB helicase C 96.3 0.0066 1.4E-07 51.0 5.1 40 33-73 14-54 (242)
262 PRK10751 molybdopterin-guanine 96.3 0.016 3.5E-07 45.9 6.9 41 31-73 6-46 (173)
263 PRK04328 hypothetical protein; 96.3 0.011 2.4E-07 50.0 6.2 41 31-73 23-63 (249)
264 TIGR03574 selen_PSTK L-seryl-t 96.3 0.0058 1.2E-07 51.7 4.5 36 35-71 2-37 (249)
265 TIGR00475 selB selenocysteine- 96.3 0.0097 2.1E-07 56.6 6.3 67 139-205 49-115 (581)
266 cd01898 Obg Obg subfamily. Th 96.2 0.019 4.2E-07 45.0 7.1 65 140-205 48-126 (170)
267 cd04116 Rab9 Rab9 subfamily. 96.2 0.076 1.6E-06 41.7 10.4 67 138-205 52-126 (170)
268 cd01887 IF2_eIF5B IF2/eIF5B (i 96.2 0.012 2.6E-07 46.0 5.8 67 138-205 48-114 (168)
269 PF13481 AAA_25: AAA domain; P 96.2 0.0079 1.7E-07 48.6 4.8 41 33-73 33-82 (193)
270 COG3367 Uncharacterized conser 96.2 0.17 3.7E-06 43.6 12.7 172 30-243 147-330 (339)
271 PRK05480 uridine/cytidine kina 96.2 0.013 2.8E-07 48.1 6.0 40 30-73 5-44 (209)
272 TIGR02238 recomb_DMC1 meiotic 96.2 0.015 3.3E-07 50.8 6.6 41 32-72 96-141 (313)
273 PRK09519 recA DNA recombinatio 96.1 0.017 3.7E-07 56.2 7.3 41 32-73 60-100 (790)
274 PF02492 cobW: CobW/HypB/UreG, 96.1 0.066 1.4E-06 42.8 9.7 38 34-73 2-39 (178)
275 cd04154 Arl2 Arl2 subfamily. 96.1 0.1 2.2E-06 41.2 10.7 66 139-205 57-127 (173)
276 TIGR03575 selen_PSTK_euk L-ser 96.1 0.0079 1.7E-07 53.0 4.6 40 35-74 2-41 (340)
277 PRK00093 GTP-binding protein D 96.1 0.064 1.4E-06 49.3 10.8 67 138-205 219-296 (435)
278 PLN03118 Rab family protein; P 96.1 0.11 2.3E-06 42.6 11.1 67 138-205 60-132 (211)
279 cd04115 Rab33B_Rab33A Rab33B/R 96.1 0.099 2.1E-06 41.1 10.5 67 138-205 49-121 (170)
280 PF01695 IstB_IS21: IstB-like 96.1 0.0089 1.9E-07 47.8 4.4 38 31-70 47-84 (178)
281 cd01878 HflX HflX subfamily. 96.1 0.041 8.9E-07 44.8 8.4 66 139-205 88-165 (204)
282 cd00544 CobU Adenosylcobinamid 96.1 0.14 3E-06 40.6 11.0 32 35-70 2-33 (169)
283 PRK05541 adenylylsulfate kinas 96.0 0.016 3.6E-07 46.1 5.8 39 31-71 7-45 (176)
284 PF03796 DnaB_C: DnaB-like hel 96.0 0.013 2.8E-07 49.9 5.5 41 32-73 19-60 (259)
285 cd00983 recA RecA is a bacter 96.0 0.012 2.6E-07 51.5 5.4 39 31-71 55-93 (325)
286 TIGR00455 apsK adenylylsulfate 96.0 0.016 3.4E-07 46.6 5.7 40 31-72 18-57 (184)
287 PHA00729 NTP-binding motif con 96.0 0.015 3.3E-07 48.0 5.5 26 32-58 18-43 (226)
288 KOG0460 Mitochondrial translat 96.0 0.012 2.5E-07 51.1 4.9 136 142-289 119-256 (449)
289 COG1484 DnaC DNA replication p 96.0 0.013 2.8E-07 49.8 5.1 35 32-68 106-140 (254)
290 cd03113 CTGs CTP synthetase (C 96.0 0.32 7E-06 40.5 13.0 186 38-239 8-237 (255)
291 PF00485 PRK: Phosphoribulokin 96.0 0.01 2.3E-07 48.1 4.4 38 33-72 1-42 (194)
292 PRK06526 transposase; Provisio 96.0 0.0052 1.1E-07 52.1 2.6 35 33-69 100-134 (254)
293 PTZ00133 ADP-ribosylation fact 96.0 0.1 2.2E-06 41.8 10.1 68 138-205 59-130 (182)
294 cd01862 Rab7 Rab7 subfamily. 95.9 0.095 2.1E-06 41.0 9.8 66 140-206 49-122 (172)
295 PRK05439 pantothenate kinase; 95.9 0.019 4.2E-07 49.9 6.2 41 31-73 86-128 (311)
296 PLN03108 Rab family protein; P 95.9 0.31 6.8E-06 39.9 13.0 65 140-205 55-123 (210)
297 cd04128 Spg1 Spg1p. Spg1p (se 95.9 0.15 3.2E-06 40.8 10.7 67 138-205 47-116 (182)
298 cd04119 RJL RJL (RabJ-Like) su 95.9 0.12 2.5E-06 40.2 10.0 68 138-205 47-122 (168)
299 cd01863 Rab18 Rab18 subfamily. 95.9 0.19 4.2E-06 38.9 11.2 67 138-205 47-118 (161)
300 cd04155 Arl3 Arl3 subfamily. 95.9 0.16 3.5E-06 39.9 10.8 67 138-205 56-127 (173)
301 PF00071 Ras: Ras family; Int 95.8 0.054 1.2E-06 42.1 7.9 91 138-234 46-139 (162)
302 PRK07414 cob(I)yrinic acid a,c 95.8 0.055 1.2E-06 42.9 7.8 41 27-70 18-58 (178)
303 PF13207 AAA_17: AAA domain; P 95.8 0.015 3.3E-07 43.0 4.3 30 36-71 3-32 (121)
304 PLN03071 GTP-binding nuclear p 95.8 0.12 2.7E-06 42.7 10.2 67 138-205 60-129 (219)
305 cd04164 trmE TrmE (MnmE, ThdF, 95.8 0.13 2.9E-06 39.3 9.9 65 138-205 47-119 (157)
306 PF00154 RecA: recA bacterial 95.8 0.023 5E-07 49.6 6.0 40 31-72 53-92 (322)
307 TIGR03600 phage_DnaB phage rep 95.7 0.017 3.8E-07 52.8 5.3 42 32-73 194-235 (421)
308 smart00053 DYNc Dynamin, GTPas 95.7 0.48 1E-05 39.8 13.4 67 138-205 123-204 (240)
309 cd04117 Rab15 Rab15 subfamily. 95.7 0.2 4.3E-06 39.1 10.5 67 139-205 48-117 (161)
310 COG0480 FusA Translation elong 95.7 0.031 6.8E-07 53.9 6.9 91 139-238 75-166 (697)
311 cd04114 Rab30 Rab30 subfamily. 95.7 0.15 3.2E-06 39.9 9.9 66 139-205 55-124 (169)
312 PLN03187 meiotic recombination 95.7 0.03 6.4E-07 49.6 6.3 42 31-72 125-171 (344)
313 COG1618 Predicted nucleotide k 95.7 0.034 7.4E-07 43.1 5.7 35 31-67 5-39 (179)
314 PRK08533 flagellar accessory p 95.6 0.025 5.5E-07 47.2 5.6 40 32-73 25-64 (230)
315 PRK13351 elongation factor G; 95.6 0.16 3.5E-06 49.6 11.7 92 138-238 71-163 (687)
316 KOG0461 Selenocysteine-specifi 95.6 0.046 1E-06 47.6 6.9 67 138-205 68-134 (522)
317 cd01893 Miro1 Miro1 subfamily. 95.6 0.11 2.3E-06 40.8 8.7 67 138-205 45-115 (166)
318 PRK06762 hypothetical protein; 95.6 0.021 4.6E-07 44.9 4.6 36 31-71 2-37 (166)
319 PRK11537 putative GTP-binding 95.5 0.11 2.3E-06 45.7 9.3 37 34-73 6-42 (318)
320 TIGR03881 KaiC_arch_4 KaiC dom 95.5 0.03 6.4E-07 46.7 5.6 40 31-72 20-59 (229)
321 cd00877 Ran Ran (Ras-related n 95.5 0.12 2.6E-06 40.6 8.8 67 138-205 47-116 (166)
322 COG4088 Predicted nucleotide k 95.5 0.015 3.1E-07 47.1 3.3 37 35-72 4-40 (261)
323 TIGR03880 KaiC_arch_3 KaiC dom 95.5 0.031 6.8E-07 46.4 5.6 40 31-72 16-55 (224)
324 PRK09354 recA recombinase A; P 95.5 0.028 6.1E-07 49.7 5.4 40 31-72 60-99 (349)
325 COG5192 BMS1 GTP-binding prote 95.5 0.061 1.3E-06 49.8 7.6 27 31-58 69-95 (1077)
326 PRK05595 replicative DNA helic 95.5 0.025 5.5E-07 52.1 5.3 41 32-72 201-241 (444)
327 TIGR03877 thermo_KaiC_1 KaiC d 95.4 0.033 7.1E-07 46.8 5.6 40 32-73 22-61 (237)
328 PRK03003 GTP-binding protein D 95.4 0.11 2.4E-06 48.3 9.4 67 138-205 257-334 (472)
329 PRK14489 putative bifunctional 95.4 0.051 1.1E-06 48.8 7.0 42 30-73 204-245 (366)
330 cd01121 Sms Sms (bacterial rad 95.4 0.03 6.5E-07 50.2 5.4 38 33-71 83-120 (372)
331 PRK12377 putative replication 95.4 0.029 6.2E-07 47.4 5.0 36 33-70 103-138 (248)
332 cd00157 Rho Rho (Ras homology) 95.4 0.055 1.2E-06 42.4 6.5 68 138-206 46-117 (171)
333 KOG0744 AAA+-type ATPase [Post 95.4 0.037 7.9E-07 47.8 5.6 155 33-192 178-347 (423)
334 PRK11823 DNA repair protein Ra 95.4 0.031 6.8E-07 51.4 5.6 39 32-71 80-118 (446)
335 PRK08760 replicative DNA helic 95.4 0.026 5.7E-07 52.3 5.2 42 32-73 229-270 (476)
336 TIGR00483 EF-1_alpha translati 95.4 0.06 1.3E-06 49.4 7.5 68 138-205 83-153 (426)
337 COG0467 RAD55 RecA-superfamily 95.4 0.038 8.1E-07 47.1 5.8 44 31-76 23-66 (260)
338 PRK09183 transposase/IS protei 95.4 0.03 6.5E-07 47.7 5.1 35 32-68 103-137 (259)
339 TIGR00416 sms DNA repair prote 95.3 0.031 6.7E-07 51.5 5.4 38 33-71 95-132 (454)
340 PRK08506 replicative DNA helic 95.3 0.03 6.5E-07 52.0 5.3 41 32-73 192-232 (472)
341 PLN03186 DNA repair protein RA 95.3 0.044 9.5E-07 48.5 6.1 42 32-73 123-169 (342)
342 cd01874 Cdc42 Cdc42 subfamily. 95.3 0.24 5.2E-06 39.3 9.9 67 138-205 47-117 (175)
343 COG0237 CoaE Dephospho-CoA kin 95.3 0.032 7E-07 45.4 4.8 35 30-72 1-35 (201)
344 PRK09518 bifunctional cytidyla 95.3 0.11 2.4E-06 50.9 9.3 67 138-205 321-395 (712)
345 TIGR03156 GTP_HflX GTP-binding 95.1 0.18 4E-06 44.9 9.6 66 139-205 236-313 (351)
346 PRK05642 DNA replication initi 95.1 0.033 7.2E-07 46.6 4.7 36 35-71 48-83 (234)
347 PF06745 KaiC: KaiC; InterPro 95.1 0.033 7.1E-07 46.3 4.6 40 32-73 20-60 (226)
348 COG4240 Predicted kinase [Gene 95.1 0.044 9.5E-07 45.0 5.0 41 32-73 50-91 (300)
349 TIGR00665 DnaB replicative DNA 95.1 0.038 8.3E-07 50.8 5.4 42 32-73 195-236 (434)
350 PRK06749 replicative DNA helic 95.1 0.035 7.6E-07 50.8 5.0 41 32-73 186-226 (428)
351 PRK08727 hypothetical protein; 95.1 0.037 8.1E-07 46.3 4.8 35 35-70 44-78 (233)
352 TIGR00101 ureG urease accessor 95.1 0.25 5.4E-06 40.3 9.5 38 33-73 3-40 (199)
353 cd00009 AAA The AAA+ (ATPases 95.0 0.045 9.7E-07 41.3 4.9 40 32-73 20-59 (151)
354 COG4108 PrfC Peptide chain rel 95.0 0.08 1.7E-06 47.6 6.8 88 138-234 79-166 (528)
355 PRK06835 DNA replication prote 95.0 0.037 8E-07 48.8 4.8 37 32-70 184-220 (329)
356 PRK08006 replicative DNA helic 95.0 0.043 9.4E-07 50.8 5.4 42 32-73 224-265 (471)
357 TIGR02655 circ_KaiC circadian 95.0 0.047 1E-06 50.9 5.7 41 32-73 263-303 (484)
358 cd00882 Ras_like_GTPase Ras-li 95.0 0.098 2.1E-06 39.3 6.7 67 138-205 43-114 (157)
359 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.038 8.3E-07 45.7 4.7 39 32-72 39-77 (226)
360 PRK06904 replicative DNA helic 95.0 0.044 9.6E-07 50.8 5.4 42 32-73 221-262 (472)
361 TIGR02034 CysN sulfate adenyly 94.9 0.036 7.8E-07 50.5 4.7 68 138-205 78-145 (406)
362 TIGR00041 DTMP_kinase thymidyl 94.9 0.062 1.4E-06 43.4 5.7 36 31-68 3-38 (195)
363 PRK08903 DnaA regulatory inact 94.9 0.047 1E-06 45.4 5.0 36 35-71 45-80 (227)
364 cd04134 Rho3 Rho3 subfamily. 94.9 0.32 6.9E-06 39.1 9.8 67 138-205 46-116 (189)
365 PRK01906 tetraacyldisaccharide 94.9 0.06 1.3E-06 47.5 5.8 42 31-73 56-98 (338)
366 PRK05748 replicative DNA helic 94.9 0.044 9.5E-07 50.6 5.1 42 32-73 203-244 (448)
367 cd01393 recA_like RecA is a b 94.9 0.046 9.9E-07 45.3 4.9 40 31-72 19-64 (226)
368 TIGR00991 3a0901s02IAP34 GTP-b 94.9 0.17 3.8E-06 43.9 8.4 68 138-205 84-165 (313)
369 PRK08840 replicative DNA helic 94.9 0.049 1.1E-06 50.3 5.4 43 31-73 216-258 (464)
370 PRK08939 primosomal protein Dn 94.9 0.047 1E-06 47.7 5.0 38 31-70 156-193 (306)
371 COG1217 TypA Predicted membran 94.9 0.072 1.6E-06 48.2 6.1 68 138-206 66-133 (603)
372 PRK08118 topology modulation p 94.8 0.035 7.7E-07 43.9 3.8 25 33-58 3-27 (167)
373 PTZ00035 Rad51 protein; Provis 94.8 0.093 2E-06 46.5 6.8 41 31-72 118-163 (337)
374 COG2759 MIS1 Formyltetrahydrof 94.8 0.029 6.3E-07 50.3 3.5 64 30-97 51-117 (554)
375 PF02572 CobA_CobO_BtuR: ATP:c 94.8 0.034 7.4E-07 44.0 3.5 29 40-69 11-39 (172)
376 COG2874 FlaH Predicted ATPases 94.8 0.11 2.3E-06 42.4 6.3 105 33-149 29-133 (235)
377 PRK08181 transposase; Validate 94.8 0.043 9.3E-07 46.9 4.4 33 36-69 110-142 (269)
378 PRK06893 DNA replication initi 94.8 0.052 1.1E-06 45.3 4.8 35 35-70 42-76 (229)
379 TIGR00554 panK_bact pantothena 94.7 0.082 1.8E-06 45.7 6.0 41 31-73 62-104 (290)
380 PRK09518 bifunctional cytidyla 94.7 0.16 3.5E-06 49.8 8.7 67 138-205 496-573 (712)
381 PF13086 AAA_11: AAA domain; P 94.7 0.036 7.9E-07 45.8 3.8 34 34-68 19-60 (236)
382 cd02025 PanK Pantothenate kina 94.7 0.052 1.1E-06 45.0 4.6 39 34-73 2-41 (220)
383 COG1102 Cmk Cytidylate kinase 94.7 0.035 7.5E-07 43.1 3.2 28 33-65 2-29 (179)
384 cd01852 AIG1 AIG1 (avrRpt2-ind 94.7 0.4 8.7E-06 38.8 9.7 67 138-205 47-128 (196)
385 cd02019 NK Nucleoside/nucleoti 94.6 0.081 1.8E-06 35.0 4.6 32 34-69 2-33 (69)
386 PRK06321 replicative DNA helic 94.6 0.064 1.4E-06 49.7 5.4 42 32-73 226-267 (472)
387 PF01935 DUF87: Domain of unkn 94.6 0.067 1.5E-06 44.5 5.1 41 31-73 23-64 (229)
388 PRK09270 nucleoside triphospha 94.6 0.081 1.8E-06 44.1 5.5 40 31-72 33-73 (229)
389 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 94.5 0.41 9E-06 38.3 9.4 67 138-205 51-121 (182)
390 PLN02924 thymidylate kinase 94.5 0.09 2E-06 43.6 5.6 39 28-68 13-51 (220)
391 PF13604 AAA_30: AAA domain; P 94.5 0.074 1.6E-06 43.2 5.0 33 34-67 20-52 (196)
392 PF08433 KTI12: Chromatin asso 94.5 0.062 1.3E-06 46.0 4.7 35 35-70 4-38 (270)
393 TIGR02239 recomb_RAD51 DNA rep 94.5 0.096 2.1E-06 46.0 5.9 41 32-72 96-141 (316)
394 cd01123 Rad51_DMC1_radA Rad51_ 94.5 0.053 1.1E-06 45.3 4.2 40 31-72 19-64 (235)
395 PRK08116 hypothetical protein; 94.4 0.067 1.4E-06 45.8 4.8 34 35-69 117-150 (268)
396 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 94.4 0.49 1.1E-05 39.3 9.8 67 138-205 47-117 (222)
397 PRK08084 DNA replication initi 94.4 0.07 1.5E-06 44.7 4.8 36 35-71 48-83 (235)
398 PLN02759 Formate--tetrahydrofo 94.4 0.081 1.7E-06 49.4 5.4 69 30-101 68-139 (637)
399 PRK06851 hypothetical protein; 94.4 0.13 2.9E-06 45.8 6.6 45 31-76 213-257 (367)
400 PF05729 NACHT: NACHT domain 94.3 0.058 1.2E-06 42.0 4.0 27 34-61 2-28 (166)
401 COG2895 CysN GTPases - Sulfate 94.3 0.14 3.1E-06 44.8 6.5 105 138-244 84-188 (431)
402 TIGR02475 CobW cobalamin biosy 94.3 1.2 2.7E-05 39.5 12.7 39 34-75 6-44 (341)
403 cd01879 FeoB Ferrous iron tran 94.3 0.4 8.7E-06 36.8 8.7 64 139-205 42-113 (158)
404 PRK12298 obgE GTPase CgtA; Rev 94.3 0.28 6.1E-06 44.4 8.8 65 140-205 207-287 (390)
405 PRK05636 replicative DNA helic 94.3 0.082 1.8E-06 49.4 5.4 42 32-73 265-306 (505)
406 PRK09866 hypothetical protein; 94.3 0.13 2.9E-06 48.8 6.7 67 138-205 228-301 (741)
407 PF13191 AAA_16: AAA ATPase do 94.3 0.098 2.1E-06 41.6 5.2 40 31-72 24-63 (185)
408 COG1663 LpxK Tetraacyldisaccha 94.2 0.18 4E-06 43.9 7.0 42 31-73 47-89 (336)
409 PF13401 AAA_22: AAA domain; P 94.2 0.06 1.3E-06 40.3 3.7 41 32-73 4-49 (131)
410 PLN03046 D-glycerate 3-kinase; 94.2 0.1 2.2E-06 47.1 5.7 41 31-73 212-252 (460)
411 TIGR02236 recomb_radA DNA repa 94.2 0.07 1.5E-06 46.7 4.6 41 32-72 95-140 (310)
412 PF12846 AAA_10: AAA-like doma 94.2 0.076 1.6E-06 45.8 4.9 32 38-70 7-38 (304)
413 COG2109 BtuR ATP:corrinoid ade 94.2 0.38 8.3E-06 38.4 8.1 36 31-69 29-64 (198)
414 COG0572 Udk Uridine kinase [Nu 94.2 0.073 1.6E-06 43.6 4.3 39 31-73 8-46 (218)
415 PRK09165 replicative DNA helic 94.2 0.079 1.7E-06 49.5 5.1 42 32-73 217-272 (497)
416 PRK06217 hypothetical protein; 94.2 0.054 1.2E-06 43.5 3.5 32 33-71 3-34 (183)
417 KOG1805 DNA replication helica 94.2 0.13 2.9E-06 50.4 6.6 37 32-69 685-721 (1100)
418 KOG3220 Similar to bacterial d 94.1 0.068 1.5E-06 43.0 3.9 46 125-176 93-138 (225)
419 PRK13507 formate--tetrahydrofo 94.1 0.069 1.5E-06 49.4 4.4 68 30-101 62-132 (587)
420 PRK06921 hypothetical protein; 94.1 0.088 1.9E-06 45.0 4.9 36 32-69 118-154 (266)
421 cd01888 eIF2_gamma eIF2-gamma 94.1 0.08 1.7E-06 43.2 4.5 66 140-205 83-149 (203)
422 cd02023 UMPK Uridine monophosp 94.1 0.088 1.9E-06 42.7 4.7 36 34-73 2-37 (198)
423 KOG0448 Mitofusin 1 GTPase, in 94.1 0.62 1.4E-05 44.3 10.6 66 141-208 207-276 (749)
424 PRK00131 aroK shikimate kinase 94.0 0.055 1.2E-06 42.7 3.3 33 32-71 5-37 (175)
425 PRK11058 GTPase HflX; Provisio 94.0 0.45 9.7E-06 43.6 9.5 64 141-205 246-321 (426)
426 PF01268 FTHFS: Formate--tetra 93.9 0.034 7.4E-07 51.4 2.2 52 30-85 53-107 (557)
427 TIGR00450 mnmE_trmE_thdF tRNA 93.9 0.18 4E-06 46.4 6.9 65 138-205 249-322 (442)
428 PLN02796 D-glycerate 3-kinase 93.9 0.11 2.4E-06 45.8 5.2 41 31-73 100-140 (347)
429 PRK05291 trmE tRNA modificatio 93.9 0.3 6.4E-06 45.2 8.2 66 138-206 261-334 (449)
430 cd01672 TMPK Thymidine monopho 93.8 0.13 2.9E-06 41.3 5.3 35 33-69 2-36 (200)
431 PRK07004 replicative DNA helic 93.8 0.096 2.1E-06 48.5 4.9 42 32-73 213-254 (460)
432 PRK06761 hypothetical protein; 93.8 0.099 2.2E-06 44.9 4.6 39 31-71 3-42 (282)
433 PRK04301 radA DNA repair and r 93.8 0.097 2.1E-06 46.0 4.7 40 32-72 102-147 (317)
434 PRK05124 cysN sulfate adenylyl 93.8 0.09 1.9E-06 48.9 4.6 68 138-205 105-172 (474)
435 PF00931 NB-ARC: NB-ARC domain 93.7 0.093 2E-06 45.1 4.5 42 31-73 19-61 (287)
436 PLN03210 Resistant to P. syrin 93.7 0.12 2.6E-06 53.6 5.9 36 31-68 207-242 (1153)
437 cd02021 GntK Gluconate kinase 93.7 0.061 1.3E-06 41.4 2.9 33 35-73 2-34 (150)
438 COG0523 Putative GTPases (G3E 93.7 1.4 3.1E-05 38.7 11.7 141 35-205 4-157 (323)
439 PRK14490 putative bifunctional 93.6 0.2 4.2E-06 45.1 6.5 39 31-72 5-43 (369)
440 COG3854 SpoIIIAA ncharacterize 93.6 0.6 1.3E-05 38.7 8.4 33 38-70 143-179 (308)
441 TIGR00235 udk uridine kinase. 93.6 0.12 2.5E-06 42.4 4.6 37 31-71 6-42 (207)
442 COG2229 Predicted GTPase [Gene 93.6 2.5 5.5E-05 33.6 11.6 69 138-206 66-134 (187)
443 COG5256 TEF1 Translation elong 93.6 0.14 3.1E-06 45.7 5.2 69 138-206 83-158 (428)
444 COG2074 2-phosphoglycerate kin 93.6 0.081 1.7E-06 44.2 3.4 27 32-58 89-115 (299)
445 PF13671 AAA_33: AAA domain; P 93.5 0.053 1.2E-06 41.3 2.3 32 34-71 1-32 (143)
446 KOG0462 Elongation factor-type 93.5 0.27 5.8E-06 45.6 7.0 68 138-206 123-190 (650)
447 PLN02200 adenylate kinase fami 93.5 0.13 2.7E-06 43.2 4.7 35 22-56 33-67 (234)
448 KOG0468 U5 snRNP-specific prot 93.5 0.11 2.5E-06 49.0 4.6 66 138-204 195-260 (971)
449 KOG3062 RNA polymerase II elon 93.4 0.54 1.2E-05 38.7 7.9 32 36-68 5-38 (281)
450 PTZ00301 uridine kinase; Provi 93.4 0.19 4.2E-06 41.3 5.6 42 31-73 3-45 (210)
451 cd01131 PilT Pilus retraction 93.4 1.4 3.1E-05 35.7 10.7 34 35-68 4-37 (198)
452 PF13173 AAA_14: AAA domain 93.4 0.13 2.9E-06 38.5 4.3 39 32-73 3-41 (128)
453 PRK03731 aroL shikimate kinase 93.3 0.1 2.3E-06 41.1 3.7 35 31-72 2-36 (171)
454 KOG1423 Ras-like GTPase ERA [C 93.3 0.28 6.1E-06 42.2 6.3 111 33-205 74-197 (379)
455 PRK00698 tmk thymidylate kinas 93.2 0.21 4.5E-06 40.6 5.6 35 31-67 3-37 (205)
456 PLN02348 phosphoribulokinase 93.2 0.22 4.8E-06 44.6 5.9 40 31-72 49-103 (395)
457 PTZ00386 formyl tetrahydrofola 93.2 0.12 2.5E-06 48.3 4.2 69 30-102 67-139 (625)
458 PRK05506 bifunctional sulfate 93.1 0.15 3.3E-06 49.2 5.2 41 31-73 460-500 (632)
459 PF09848 DUF2075: Uncharacteri 93.1 0.14 3E-06 45.7 4.6 38 32-70 1-40 (352)
460 COG1100 GTPase SAR1 and relate 93.1 0.29 6.3E-06 40.1 6.2 67 139-205 53-123 (219)
461 PRK09302 circadian clock prote 93.1 0.18 4E-06 47.3 5.5 40 31-72 273-312 (509)
462 PRK09302 circadian clock prote 93.0 0.16 3.5E-06 47.7 5.2 41 31-73 31-72 (509)
463 PRK07933 thymidylate kinase; V 93.0 0.22 4.7E-06 41.1 5.3 36 33-70 2-37 (213)
464 PF13238 AAA_18: AAA domain; P 93.0 0.11 2.3E-06 38.6 3.2 21 36-56 2-22 (129)
465 PTZ00327 eukaryotic translatio 92.9 0.14 3.1E-06 47.3 4.4 67 139-205 116-183 (460)
466 PRK05537 bifunctional sulfate 92.9 0.21 4.5E-06 47.5 5.6 41 31-72 392-432 (568)
467 PF00910 RNA_helicase: RNA hel 92.9 0.12 2.5E-06 37.5 3.2 21 38-58 4-24 (107)
468 cd01895 EngA2 EngA2 subfamily. 92.9 0.41 8.9E-06 37.2 6.6 67 138-205 48-125 (174)
469 PRK09554 feoB ferrous iron tra 92.8 0.52 1.1E-05 46.6 8.4 88 138-235 48-147 (772)
470 PRK13973 thymidylate kinase; P 92.8 0.3 6.5E-06 40.2 5.9 35 31-67 3-37 (213)
471 PTZ00369 Ras-like protein; Pro 92.8 2.9 6.3E-05 33.4 11.6 67 138-205 51-122 (189)
472 PRK06547 hypothetical protein; 92.8 0.13 2.8E-06 40.9 3.5 24 31-55 15-38 (172)
473 cd01889 SelB_euk SelB subfamil 92.8 0.27 6E-06 39.5 5.6 67 138-205 66-132 (192)
474 TIGR00487 IF-2 translation ini 92.8 0.27 5.8E-06 47.0 6.2 64 141-205 136-199 (587)
475 PRK06851 hypothetical protein; 92.7 0.32 7E-06 43.4 6.3 46 31-77 29-74 (367)
476 PRK07261 topology modulation p 92.7 0.14 3E-06 40.6 3.7 21 34-55 3-23 (171)
477 TIGR01360 aden_kin_iso1 adenyl 92.7 0.15 3.1E-06 40.8 3.8 25 31-56 3-27 (188)
478 PRK12339 2-phosphoglycerate ki 92.7 0.14 3.1E-06 41.6 3.7 33 33-70 4-36 (197)
479 PF06414 Zeta_toxin: Zeta toxi 92.7 0.13 2.9E-06 41.8 3.6 40 31-73 14-53 (199)
480 PRK12338 hypothetical protein; 92.6 0.14 3.1E-06 44.7 3.7 35 33-72 5-39 (319)
481 PRK04040 adenylate kinase; Pro 92.5 0.17 3.6E-06 40.9 3.9 26 31-57 2-27 (188)
482 TIGR03172 probable selenium-de 92.5 0.2 4.3E-06 41.8 4.4 31 33-67 1-31 (232)
483 COG1072 CoaA Panthothenate kin 92.5 0.32 6.8E-06 41.3 5.5 41 31-73 82-124 (283)
484 cd04111 Rab39 Rab39 subfamily. 92.4 2.9 6.3E-05 34.2 11.3 119 138-280 50-172 (211)
485 COG0468 RecA RecA/RadA recombi 92.3 0.26 5.7E-06 42.2 5.0 39 31-71 60-98 (279)
486 COG0532 InfB Translation initi 92.3 0.23 4.9E-06 45.8 4.8 67 139-206 54-120 (509)
487 PF07724 AAA_2: AAA domain (Cd 92.2 0.31 6.8E-06 38.6 5.1 41 32-73 3-44 (171)
488 TIGR02655 circ_KaiC circadian 92.2 0.27 5.8E-06 45.9 5.4 41 31-72 21-61 (484)
489 COG0378 HypB Ni2+-binding GTPa 92.2 1.6 3.4E-05 35.2 8.8 40 31-73 13-52 (202)
490 TIGR00376 DNA helicase, putati 92.1 0.24 5.2E-06 47.8 5.1 35 33-68 174-208 (637)
491 PF03266 NTPase_1: NTPase; In 92.1 0.28 6E-06 38.8 4.6 31 36-67 3-33 (168)
492 TIGR01313 therm_gnt_kin carboh 92.1 0.14 3.1E-06 40.0 3.0 30 37-72 3-32 (163)
493 PRK13947 shikimate kinase; Pro 92.0 0.18 3.8E-06 39.8 3.5 31 34-71 4-34 (171)
494 PRK07773 replicative DNA helic 92.0 0.25 5.5E-06 49.6 5.3 42 32-73 217-258 (886)
495 cd04145 M_R_Ras_like M-Ras/R-R 92.0 1.2 2.5E-05 34.4 8.2 66 139-205 49-119 (164)
496 PRK14731 coaE dephospho-CoA ki 92.0 0.36 7.7E-06 39.6 5.3 32 31-70 5-36 (208)
497 PLN02165 adenylate isopentenyl 92.0 0.2 4.3E-06 44.0 3.9 38 28-72 40-77 (334)
498 PF01202 SKI: Shikimate kinase 91.9 0.11 2.3E-06 40.6 2.1 26 41-72 1-26 (158)
499 cd04141 Rit_Rin_Ric Rit/Rin/Ri 91.9 1 2.2E-05 35.5 7.8 67 138-205 48-119 (172)
500 TIGR03345 VI_ClpV1 type VI sec 91.8 0.38 8.3E-06 48.0 6.2 52 32-84 596-649 (852)
No 1
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.8e-41 Score=274.19 Aligned_cols=253 Identities=50% Similarity=0.839 Sum_probs=231.3
Q ss_pred ccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccc-cccCCcee
Q 022525 26 KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVP-IENYGVKC 104 (295)
Q Consensus 26 ~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~ 104 (295)
++.+...+|+|.|+||||||||+|+|||++||. .|++|.++|.|..+|+++.++|.+.+.-........| ....++.+
T Consensus 42 ~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~-~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~ 120 (300)
T KOG3022|consen 42 NLSGVKHIILVLSGKGGVGKSTVTVNLALALAS-EGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKL 120 (300)
T ss_pred cccccceEEEEEeCCCCCchhHHHHHHHHHHhc-CCCcEEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEE
Confidence 455567999999999999999999999999999 9999999999999999999999998875555666666 67889999
Q ss_pred eccccccCC-CCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhcc-CceEEEeeCCCcchHHHHH
Q 022525 105 MSMGFLVPS-SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQ-LSGALIVSTPQDVALIDAR 182 (295)
Q Consensus 105 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~-ad~viiv~~~~~~s~~~~~ 182 (295)
++.+++... +....|++......++++++...|.+.||+|||||||.++..+++..-.. +|..|||++|...++.++.
T Consensus 121 mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~ 200 (300)
T KOG3022|consen 121 MSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVR 200 (300)
T ss_pred EEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHH
Confidence 999998877 67888999999999999999999999999999999999976665544333 3779999999999999999
Q ss_pred HHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCCChH
Q 022525 183 KGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDSTV 262 (295)
Q Consensus 183 ~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~s~~ 262 (295)
+.++++++.+++++|+|-||....++.+++..+.|...-.+++++.+|+++++.||-++.+.++.+.|.|+++.+|++++
T Consensus 201 K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~~~p~s~~ 280 (300)
T KOG3022|consen 201 KEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYPDSPA 280 (300)
T ss_pred hhhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCeEeecCCCHHHHHhccCCCeeEecCCCchH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022525 263 SRAYGEVAVNVVNRLQE 279 (295)
Q Consensus 263 ~~~~~~l~~~l~~~~~~ 279 (295)
+..|++++.+|.+.+..
T Consensus 281 ~~af~~i~~~i~~~~~~ 297 (300)
T KOG3022|consen 281 SEAFEDIAEKLVEQLSS 297 (300)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999987754
No 2
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=3.7e-40 Score=291.34 Aligned_cols=253 Identities=48% Similarity=0.836 Sum_probs=199.6
Q ss_pred cCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcc-ccccCcccccccCCceee
Q 022525 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE-VTKDMKMVPIENYGVKCM 105 (295)
Q Consensus 27 ~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~ 105 (295)
.+.+.++|+|+|+||||||||+|+|||.+||+ .|+||++||+|+|+++++.+||..+... ..+...+.|....++...
T Consensus 103 ~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~-~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~~~g~~~~ 181 (369)
T PRK11670 103 VNGVKNIIAVSSGKGGVGKSSTAVNLALALAA-EGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMAHGLATN 181 (369)
T ss_pred CCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeeeccCcccc
Confidence 55668999999999999999999999999999 9999999999999999988998754322 112222333222223222
Q ss_pred ccccccCCCCCCccCCchHHHHHHHHHH-hccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHH
Q 022525 106 SMGFLVPSSSPVVWRGPMVMSALRKMSR-EVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKG 184 (295)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~ 184 (295)
+.+.+........+++......+.+++. .+. +.||||||||||++++..++...+..+|.+|+|+.|+..++.++.+.
T Consensus 182 ~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~-~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~ 260 (369)
T PRK11670 182 SIGYLVTDDNAMVWRGPMASKALMQMLQETLW-PDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKG 260 (369)
T ss_pred cHHHhcCcCcceeecCcchHHHHHHHHHHHhh-ccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhHHHHHHHH
Confidence 2333222222233344445566777664 444 88999999999999865566667777999999999999999999999
Q ss_pred HHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCCChHHH
Q 022525 185 ITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDSTVSR 264 (295)
Q Consensus 185 ~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~s~~~~ 264 (295)
++.+.+.+.+++|+|+||+...++.+......+.+...+++.+.++.++++.||++..+.++...|+|+..+.|++++++
T Consensus 261 i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~ll~~IP~~~~I~ea~~~G~Pv~~~~p~s~~a~ 340 (369)
T PRK11670 261 IVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDRGTPTVVSRPESEFTA 340 (369)
T ss_pred HHHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcEEEEeCCChHHHHHHHCCCcEEEeCCCCHHHH
Confidence 99999999999999999998766655444444555668899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022525 265 AYGEVAVNVVNRLQELA 281 (295)
Q Consensus 265 ~~~~l~~~l~~~~~~~~ 281 (295)
+|.++++++..++....
T Consensus 341 ~y~~LA~el~~~~~~~~ 357 (369)
T PRK11670 341 IYRQLADRVAAQLYWQG 357 (369)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 99999999999886443
No 3
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=100.00 E-value=2.9e-36 Score=256.04 Aligned_cols=228 Identities=28% Similarity=0.384 Sum_probs=178.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC-ccccccC-------cccccccCCce
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKDM-------KMVPIENYGVK 103 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~-~~~~~~~-------~~~~~~~~~~~ 103 (295)
++|+|.|+||||||||+|+|||++||+ +|++|++||+|+|+++++.++|.++. .++.+.. ........+++
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAK-LGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVK 79 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEE
Confidence 589999999999999999999999999 99999999999998899999988753 2222211 01111223566
Q ss_pred eeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHH
Q 022525 104 CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~ 183 (295)
++|.+.... .........+...+..+. +.||||||||||+++ ......+..||.+++|+.++..++..+.+
T Consensus 80 ~lp~~~~~~------~~~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~ 150 (251)
T TIGR01969 80 VIPAGVSLE------GLRKADPDKLEDVLKEII-DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALK 150 (251)
T ss_pred EEeCCCCHH------HHhhcCHHHHHHHHHHHH-hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHH
Confidence 665442111 111122456778888887 899999999999998 45667778999999999999999999888
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCCChHH
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDSTVS 263 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~s~~~ 263 (295)
.++.+...+.+..++|+|+++.... ....+++.+.++.++++.||+++.+.++...|+|++++.|+++++
T Consensus 151 ~~~~~~~~~~~~~~vv~N~~~~~~~----------~~~~~~l~~~~~~~~l~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~ 220 (251)
T TIGR01969 151 TKIVAEKLGTAILGVVLNRVTRDKT----------ELGREEIETILEVPVLGVVPEDPEVRRAAAFGEPVVIYNPNSPAA 220 (251)
T ss_pred HHHHHHhcCCceEEEEEECCCchhh----------hhHHHHHHHhhCCcEEEEecCCHhHHHHHHcCCceEEeCCCCHHH
Confidence 8888877788888999999873210 112455566678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 022525 264 RAYGEVAVNVVNRLQE 279 (295)
Q Consensus 264 ~~~~~l~~~l~~~~~~ 279 (295)
++|++|+++|..+...
T Consensus 221 ~~~~~la~~i~~~~~~ 236 (251)
T TIGR01969 221 QAFMELAAELAGIEYE 236 (251)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999887644
No 4
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=3.5e-35 Score=252.03 Aligned_cols=233 Identities=21% Similarity=0.200 Sum_probs=173.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccC-----------ccccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM-----------KMVPIEN 99 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~ 99 (295)
||+|+|+ +||||||||+++|||++||+ +|+||++||+|+|++++..++|..+...+.+.. .......
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~-~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~~ 78 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALST-MGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGF 78 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHh-hCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeCC
Confidence 4899999 99999999999999999999 999999999999999888777654333322211 0111123
Q ss_pred CCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc-chhhhhhccCceEEEeeCCCcchH
Q 022525 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA-QLTTTQTLQLSGALIVSTPQDVAL 178 (295)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~-~~~~~~l~~ad~viiv~~~~~~s~ 178 (295)
.++.+++.+..... .....++......+.+.++.+. ++||||||||++++... ......+..||.+++|+.|+..++
T Consensus 79 ~~i~~i~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl 156 (273)
T PRK13232 79 GDIKCVESGGPEPG-VGCAGRGIITSIGLLENLGAYT-DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAI 156 (273)
T ss_pred CCeEEEeCCCCCCC-CCCCCCchhHHHHHHHHccccc-ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHH
Confidence 56777776542221 1111222222334666777776 88999999998776422 122222347999999999999999
Q ss_pred HHHHHHHHHHhc---CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEE
Q 022525 179 IDARKGITMFSK---VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVI 255 (295)
Q Consensus 179 ~~~~~~~~~l~~---~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~ 255 (295)
.++..+++.++. .+.++.|+|+|+... . ..+...+++.+.++..+++.||++..+.++...|+|++.
T Consensus 157 ~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~-------~---~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~ 226 (273)
T PRK13232 157 YAANNICKGLAKFAKGGARLGGIICNSRNV-------D---GERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVID 226 (273)
T ss_pred HHHHHHHHHHHHHhCCCCceeEEEEeCCCC-------C---ccHHHHHHHHHHhCCCeEEECCCCHHHHHHHHcCCCeEE
Confidence 998888887764 356778999997641 0 012457888888998899999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHH
Q 022525 256 SAPDSTVSRAYGEVAVNVVNRL 277 (295)
Q Consensus 256 ~~~~s~~~~~~~~l~~~l~~~~ 277 (295)
+.|+++++++|.+++++|+++.
T Consensus 227 ~~p~s~~a~~y~~La~el~~~~ 248 (273)
T PRK13232 227 FDPESNQAKEYLTLAHNVQNND 248 (273)
T ss_pred eCCCChHHHHHHHHHHHHHhCC
Confidence 9999999999999999998663
No 5
>CHL00175 minD septum-site determining protein; Validated
Probab=100.00 E-value=6.6e-35 Score=251.52 Aligned_cols=234 Identities=18% Similarity=0.286 Sum_probs=183.1
Q ss_pred cCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCc--cccccC--------cccc
Q 022525 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKDM--------KMVP 96 (295)
Q Consensus 27 ~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~--~~~~~~--------~~~~ 96 (295)
...++++|+|+|+||||||||+|+|||++|++ .|++|++||+|++.++++.++|.++.. ++.+.. ....
T Consensus 11 ~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~-~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~ 89 (281)
T CHL00175 11 SATMSRIIVITSGKGGVGKTTTTANLGMSIAR-LGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIR 89 (281)
T ss_pred cCCCceEEEEEcCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheee
Confidence 45568999999999999999999999999999 999999999999988999999987532 222211 0111
Q ss_pred -cccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCC-CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC
Q 022525 97 -IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWG-NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ 174 (295)
Q Consensus 97 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~ 174 (295)
....++.+++.+..... .......+..+++.++ . .||||||||||+++ ......+..+|.+++|+.|+
T Consensus 90 ~~~~~~l~~l~~~~~~~~-------~~~~~~~l~~~l~~l~-~~~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~ 159 (281)
T CHL00175 90 DKRWKNLSLLAISKNRQR-------YNVTRKNMNMLVDSLK-NRGYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE 159 (281)
T ss_pred cCCCCCeEEEeCCCchhh-------ccCCHHHHHHHHHHHH-hCCCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC
Confidence 12345666665422110 1122446788888887 6 89999999999987 44556677899999999999
Q ss_pred cchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceE
Q 022525 175 DVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVV 254 (295)
Q Consensus 175 ~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~ 254 (295)
..++.++.++++.+.+.+...+++|+|+++..... .. .....+++.+.++.++++.||++..+.++...|+|+.
T Consensus 160 ~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~Ip~d~~v~~a~~~g~~~~ 233 (281)
T CHL00175 160 ITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQ---AN---DMMSVRDVQEMLGIPLLGAIPEDENVIISTNRGEPLV 233 (281)
T ss_pred hHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhh---hh---ccccHHHHHHHhCCCeEEEccCCHhHHHHHHcCCceE
Confidence 99999999999999987777788999998742110 00 0113567788899999999999999999999999999
Q ss_pred EcCCCChHHHHHHHHHHHHHHHH
Q 022525 255 ISAPDSTVSRAYGEVAVNVVNRL 277 (295)
Q Consensus 255 ~~~~~s~~~~~~~~l~~~l~~~~ 277 (295)
+..|.++++++|++|+++|.++.
T Consensus 234 ~~~~~~~~~~~~~~la~~l~~~~ 256 (281)
T CHL00175 234 LNKKLTLSGIAFENAARRLVGKQ 256 (281)
T ss_pred eCCCCCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999854
No 6
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=5.7e-34 Score=244.95 Aligned_cols=230 Identities=20% Similarity=0.230 Sum_probs=169.0
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccC-----------cccccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM-----------KMVPIE 98 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~ 98 (295)
|+++|+|+ +||||||||+|+|||++||+++|+|||+||+|+|++++..++|.....++.+.. ......
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 79 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeC
Confidence 46999999 899999999999999999962499999999999997766566665443332211 112223
Q ss_pred cCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhc------cCceEEEeeC
Q 022525 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL------QLSGALIVST 172 (295)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~------~ad~viiv~~ 172 (295)
..+++++|.+..... .....++......+...++.+. +.||||||||++.+. ...+. .||.+|+|+.
T Consensus 80 ~~~l~~ipa~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~~-----~~al~~~~~~~aad~viIp~~ 152 (275)
T PRK13233 80 FKDIRCVESGGPEPG-VGCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDVV-----CGGFAMPIRDGKAQEVYIVAS 152 (275)
T ss_pred CCCcEEEECCCCCCC-CCCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCcee-----eccccccchhccCceEEEecc
Confidence 456778877643221 1111112111122556666676 889999999964332 22233 6999999999
Q ss_pred CCcchHHHHHHHHHHHh----cCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcccccccc
Q 022525 173 PQDVALIDARKGITMFS----KVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSD 248 (295)
Q Consensus 173 ~~~~s~~~~~~~~~~l~----~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~ 248 (295)
|+..++.++.++++.+. +.++++.|+|+|+... . ......+++.+.++.++++.||++..+.++..
T Consensus 153 p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~-------~---~~~~~~e~l~~~~~~~~l~~Ip~~~~v~~A~~ 222 (275)
T PRK13233 153 GEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNV-------D---GELELLEEFTDAIGTQMIHFVPRDNIVQKAEF 222 (275)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC-------C---cHHHHHHHHHHHcCCceeeecCcchHHHHHHH
Confidence 99999999988876663 4567889999996421 0 01245778888899888899999999999999
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHHHH
Q 022525 249 DGVPVVISAPDSTVSRAYGEVAVNVVNRL 277 (295)
Q Consensus 249 ~g~~i~~~~~~s~~~~~~~~l~~~l~~~~ 277 (295)
.|+|++++.|+++++++|.+++++++++.
T Consensus 223 ~g~pv~~~~~~s~~a~~y~~La~ell~~~ 251 (275)
T PRK13233 223 NKKTVVEFDPDCNQAKEYKELARKIIENK 251 (275)
T ss_pred cCCCEEEECCCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999998754
No 7
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=100.00 E-value=1.9e-33 Score=240.06 Aligned_cols=228 Identities=23% Similarity=0.341 Sum_probs=176.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCc--cccccCc--------ccc-ccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKDMK--------MVP-IEN 99 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~--~~~~~~~--------~~~-~~~ 99 (295)
+++|+|+|.||||||||+|+|||..|++ .|++|++||+|+|+++++.++|.+... ++.+... ... ...
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~-~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALAR-LGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRL 79 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHH-cCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCC
Confidence 4899999999999999999999999999 999999999999988999889886432 2211100 000 122
Q ss_pred CCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHH
Q 022525 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI 179 (295)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~ 179 (295)
.++.+++.+.... ........+..+++.++ +.||||||||||+++. .....+..+|.+|+|+.|+..++.
T Consensus 80 ~~l~~l~~~~~~~-------~~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~~~s~~ 149 (261)
T TIGR01968 80 KNLYLLPASQTRD-------KDAVTPEQMKKLVNELK-EEFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPEVSAVR 149 (261)
T ss_pred CCeEEEeCCCchh-------hhhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCCcHHHH
Confidence 4566665543111 11122456778888888 8999999999999874 445667899999999999999999
Q ss_pred HHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCC
Q 022525 180 DARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPD 259 (295)
Q Consensus 180 ~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~ 259 (295)
++.++++.++..+....++|+|+++........ ....+++.+.++.++++.||++..+.++...|+|+++..+
T Consensus 150 ~~~~~~~~l~~~~~~~~~iviN~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~- 222 (261)
T TIGR01968 150 DADRVIGLLEAKGIEKIHLIVNRLRPEMVKKGD------MLSVDDVLEILSIPLIGVIPEDEAIIVSTNKGEPVVLNDK- 222 (261)
T ss_pred HHHHHHHHHHHcCCCceEEEEeCcCchhccccc------ccCHHHHHHHhCCceeEEccCCHHHHHHHhcCCCeecCCC-
Confidence 999999999887766778999998743111100 1125678888899999999999999999999999998754
Q ss_pred ChHHHHHHHHHHHHHHH
Q 022525 260 STVSRAYGEVAVNVVNR 276 (295)
Q Consensus 260 s~~~~~~~~l~~~l~~~ 276 (295)
++++++|.+|+++|+.+
T Consensus 223 s~~~~~~~~La~~l~~~ 239 (261)
T TIGR01968 223 SRAGKAFENIARRILGE 239 (261)
T ss_pred ChHHHHHHHHHHHHhcC
Confidence 89999999999999763
No 8
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=3.2e-33 Score=240.00 Aligned_cols=232 Identities=20% Similarity=0.184 Sum_probs=161.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccC----------cccccccC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM----------KMVPIENY 100 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~ 100 (295)
|++|+|+ +||||||||+|+|||++||+ .|+|||+||+|+|++++..++|......+.+.. ...+....
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~-~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAE-MGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYG 78 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHH-CCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCC
Confidence 4899999 79999999999999999999 999999999999998776665443332322111 11122234
Q ss_pred CceeeccccccCCCCCCccCCchHHHHHHHHHHhc--cCCCccEEEEcCCCCCCccc-hhhhhhccCceEEEeeCCCcch
Q 022525 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREV--DWGNLDILVIDMPPGTGDAQ-LTTTQTLQLSGALIVSTPQDVA 177 (295)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l--~~~~yD~iiiD~~~~~~~~~-~~~~~l~~ad~viiv~~~~~~s 177 (295)
+++++|.+..... .............+.+.+... . +.||||||||++.+.... .....+.+||.+++|+.++..+
T Consensus 79 ~l~~ip~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~s 156 (274)
T PRK13235 79 GTRCTESGGPEPG-VGCAGRGIITSVNLLEQLGAYDDE-WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMA 156 (274)
T ss_pred CCEEEeCCCCCCC-CCCCCCceeehhHHHHhhchhhcc-CCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhH
Confidence 5666664422121 011111111110122222221 3 679999999976654211 2222233799999999999999
Q ss_pred HHHHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCce
Q 022525 178 LIDARKGITMFSK----VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPV 253 (295)
Q Consensus 178 ~~~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i 253 (295)
+.++..+++.+++ .++.+.|+|+|+... ...++..+++.+.++..+++.||++..+.++...|+|+
T Consensus 157 l~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~----------~~~~e~~~~l~~~~~~~ll~~Ip~~~~v~~A~~~g~pv 226 (274)
T PRK13235 157 MYAANNICKGILKYADAGGVRLGGLICNSRKV----------DNEREMIEELARKIGTQMIHFVPRDNFVQRAEINRKTV 226 (274)
T ss_pred HHHHHHHHHHHHHHhhcCCCceeEEEEecCCC----------CchHHHHHHHHHHcCCceEEeCCCCHHHHHHHhcCCcE
Confidence 9999888776543 356677899996421 01234577788888988889999999999999999999
Q ss_pred EEcCCCChHHHHHHHHHHHHHHH
Q 022525 254 VISAPDSTVSRAYGEVAVNVVNR 276 (295)
Q Consensus 254 ~~~~~~s~~~~~~~~l~~~l~~~ 276 (295)
+++.|+++++++|.+++++|+++
T Consensus 227 ~~~~p~s~~a~~y~~La~el~~~ 249 (274)
T PRK13235 227 IEYDPTHPQADEYRALARKIDEN 249 (274)
T ss_pred EEECCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999754
No 9
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=100.00 E-value=4.8e-34 Score=241.75 Aligned_cols=233 Identities=19% Similarity=0.203 Sum_probs=168.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCc--cccccC-------cccccccCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKDM-------KMVPIENYG 101 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~--~~~~~~-------~~~~~~~~~ 101 (295)
|++|+|+|+||||||||+|+|||+.||+ +|+||++||+|+|+ +++..+|.+... ++.+.. ........+
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~-~g~~VlliD~D~q~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 78 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKL-LGEPVLAIDLDPQN-LLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDG 78 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHh-CCCcEEEEeCCCcc-hHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCC
Confidence 5899999999999999999999999999 99999999999997 567777766532 122110 001112345
Q ss_pred ceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHH
Q 022525 102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDA 181 (295)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~ 181 (295)
+++++.+.......... .......++++++.+....||+|||||||+.+ .+....+..||.+++|+.|+..++..+
T Consensus 79 l~~ip~~~~~~~~~~~~--~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~--~~~~~~l~~ad~vii~~~~~~~s~~~~ 154 (246)
T TIGR03371 79 VLFLPFGDLSADEREAY--QAHDAGWLARLLQQLDLAARDWVLIDVPRGPS--PITRQALAAADLVLVVVNADAACYATL 154 (246)
T ss_pred eEEecCCCCcHHHHHHH--hhcCHHHHHHHHHhcccCCCCEEEEECCCCch--HHHHHHHHhCCeEEEEeCCCHHHHHHH
Confidence 56665443211111000 00113456777877763346999999999888 567788889999999999999999888
Q ss_pred HH-HHHHHhcCC-CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcE-EEeecCCccccccccCCCceEEcCC
Q 022525 182 RK-GITMFSKVQ-VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKV-IGEIPIEMDIRKGSDDGVPVVISAP 258 (295)
Q Consensus 182 ~~-~~~~l~~~~-~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~Ip~~~~~~~a~~~g~~i~~~~~ 258 (295)
.+ ..+.++... ...+++|+|+++.+.. ..++..+.+.+.++.++ .+.||++..+.++...|+|++++.|
T Consensus 155 ~~~~~~l~~~~~~~~~~~iv~n~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~a~~~g~pv~~~~~ 226 (246)
T TIGR03371 155 HQQALALFAGSGPRIGPHFLINQFDPARQ--------LSRDVRAVLRQTLGSRLLPFVIHRDEAVSEALARGTPVLNYAP 226 (246)
T ss_pred HHHHHHHhhcccccccceEEeeccCcchh--------hHHHHHHHHHHHhcccccCCcccchhhHHHHHHcCCCccccCC
Confidence 84 444444222 2336899999974311 12234555667778864 4689999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 022525 259 DSTVSRAYGEVAVNVVNRL 277 (295)
Q Consensus 259 ~s~~~~~~~~l~~~l~~~~ 277 (295)
.++++++|++++++|++.+
T Consensus 227 ~s~~~~~~~~la~~~l~~~ 245 (246)
T TIGR03371 227 HSQAAHDIRTLAGWLLSKL 245 (246)
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 10
>PRK10818 cell division inhibitor MinD; Provisional
Probab=100.00 E-value=1.3e-33 Score=242.28 Aligned_cols=231 Identities=17% Similarity=0.258 Sum_probs=174.3
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCc--ccccc-------Cc-ccc-cc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKD-------MK-MVP-IE 98 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~--~~~~~-------~~-~~~-~~ 98 (295)
|+++|+|.|+||||||||+|+|||+.||+ +|++|++||+|+|.++++.++|.+... ++.+. .. ... ..
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~-~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKR 79 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCC
Confidence 47999999999999999999999999999 999999999999988999999886532 21111 00 111 12
Q ss_pred cCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchH
Q 022525 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL 178 (295)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~ 178 (295)
..++.++|.+.... .+......+.++++.++...||||||||||+++ ......+..+|.+++|+.|+..++
T Consensus 80 ~~~~~~lp~~~~~~-------~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~~sl 150 (270)
T PRK10818 80 TENLYILPASQTRD-------KDALTREGVAKVLDDLKAMDFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSV 150 (270)
T ss_pred cCCEEEecCCCCcc-------hhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCchHH
Confidence 35666666553211 111223456677777752479999999999998 456677889999999999999999
Q ss_pred HHHHHHHHHHhcC-------CCCe-eeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCC
Q 022525 179 IDARKGITMFSKV-------QVPI-LGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDG 250 (295)
Q Consensus 179 ~~~~~~~~~l~~~-------~~~~-~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g 250 (295)
..+.++++.+... ..+. .++|+|+++.+.... ......+++.+.+|.++++.||++..+.++...|
T Consensus 151 ~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~Ip~~~~v~~a~~~G 224 (270)
T PRK10818 151 RDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR------GDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQG 224 (270)
T ss_pred HhHHHHHHHHHHhhccccccccccceEEEEeccCHhhhhh------cccccHHHHHHHhCCcEEEEecCCHHHHHHHHcC
Confidence 9999999987631 1122 478999987432110 0012367788889999999999999999999999
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHHHH
Q 022525 251 VPVVISAPDSTVSRAYGEVAVNVVNRL 277 (295)
Q Consensus 251 ~~i~~~~~~s~~~~~~~~l~~~l~~~~ 277 (295)
+|+. ..|+++.+++|++|+++|.++.
T Consensus 225 ~~v~-~~~~~~~~~~~~~la~~l~~~~ 250 (270)
T PRK10818 225 EPVI-LDIEADAGKAYADTVDRLLGEE 250 (270)
T ss_pred CeeE-eCCCCHHHHHHHHHHHHHhCCC
Confidence 9998 5788899999999999987643
No 11
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=100.00 E-value=2.8e-33 Score=240.26 Aligned_cols=235 Identities=23% Similarity=0.245 Sum_probs=164.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccccc-----------Cccccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-----------MKMVPIEN 99 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~ 99 (295)
|++|+|. +||||||||+|+|||.+||+ +|+||++||+|+|++.+..+.+.....++.+. ........
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~-~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 78 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAE-MGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGF 78 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHh-CCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeecC
Confidence 5899998 69999999999999999999 99999999999998766555543322222111 11111123
Q ss_pred CCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch-hhhhhccCceEEEeeCCCcchH
Q 022525 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL-TTTQTLQLSGALIVSTPQDVAL 178 (295)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~-~~~~l~~ad~viiv~~~~~~s~ 178 (295)
.+++++|.+...+... ...........+.+.+..+. +.||||||||++.+....+ ....+..||.+|+|+.|+..++
T Consensus 79 ~~l~~ip~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~-~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl 156 (270)
T cd02040 79 GGIKCVESGGPEPGVG-CAGRGVITAINLLEELGAYE-DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAL 156 (270)
T ss_pred CCeEEEeCCCCCCCCC-CcCcchhhHHHHHHhcCccc-cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHH
Confidence 5677777664332211 11111111112223344555 7899999999876532112 1112236999999999999999
Q ss_pred HHHHHHHHHHhcC----CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceE
Q 022525 179 IDARKGITMFSKV----QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVV 254 (295)
Q Consensus 179 ~~~~~~~~~l~~~----~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~ 254 (295)
.++.++++.+... +.++.++|.|+... .......+++++.+|.++++.||++..+.++...|+|++
T Consensus 157 ~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~----------~~~~~~~~~l~~~~g~~vl~~Ip~~~~v~~A~~~g~pv~ 226 (270)
T cd02040 157 YAANNICKGILKYAKSGGVRLGGLICNSRNT----------DREDELIDAFAKRLGTQMIHFVPRDNVVQRAELRGKTVI 226 (270)
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEecCCC----------hhHHHHHHHHHHHcCCCeEeecCCcHHHHHHHHcCCceE
Confidence 9888777665442 46677788886431 112245778888899999999999999999999999999
Q ss_pred EcCCCChHHHHHHHHHHHHHHHHHH
Q 022525 255 ISAPDSTVSRAYGEVAVNVVNRLQE 279 (295)
Q Consensus 255 ~~~~~s~~~~~~~~l~~~l~~~~~~ 279 (295)
++.|+++++++|++++++++++.+-
T Consensus 227 ~~~p~~~aa~~~~~La~el~~~~~~ 251 (270)
T cd02040 227 EYDPESKQADEYRELARKIVENKLL 251 (270)
T ss_pred EecCCCHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999886443
No 12
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-33 Score=239.33 Aligned_cols=227 Identities=22% Similarity=0.229 Sum_probs=162.2
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccC-------------cccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM-------------KMVP 96 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~-------------~~~~ 96 (295)
|+++|+|. +||||||||+++|||++||+ +|+|||+||+|||+ +++.+++.....++.+.. ....
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la~-~G~kVLliD~Dpq~-~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 77 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFAK-LGKKVLQIGCDPKH-DSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVY 77 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEeccCCc-chhhhhcCCCCCcHHHHHHhccccccCCCHHHhee
Confidence 47999998 69999999999999999999 99999999999997 445555432222221111 0111
Q ss_pred cccCCceeeccccccCCCCCCccCCchHHHHHHHHHHh--ccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC
Q 022525 97 IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSRE--VDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ 174 (295)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~ 174 (295)
....++++++.+...... ...... ......+++. +. ++||||||||++++.... ....+..||.+|+|+.|+
T Consensus 78 ~~~~~l~~ip~~~~~~~~-~~~~~~---~~~~~~~l~~~~~~-~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~ 151 (270)
T PRK13185 78 EGYNGVDCVEAGGPPAGT-GCGGYV---VGETVKLLKEHHLL-DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAND 151 (270)
T ss_pred eCCCCcEEEECCCCCCCC-Cccchh---HHHHHHHHHhcCcc-ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCc
Confidence 123577888766432211 111100 1111122222 34 789999999987765322 234466899999999999
Q ss_pred cchHHHHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCC
Q 022525 175 DVALIDARKGITMFSK----VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDG 250 (295)
Q Consensus 175 ~~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g 250 (295)
..++.++.++++.++. .+++..++|+|+++. ....+++.+.++.++++.||++..+.++...|
T Consensus 152 ~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------------~~~~~~~~~~~g~~vl~~Ip~~~~i~~A~~~G 218 (270)
T PRK13185 152 FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------------TDLIDKFNEAVGLKVLAHVPDLDAIRRSRLKG 218 (270)
T ss_pred hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------------HHHHHHHHHHcCCCEEEECCCCcccChHHHcC
Confidence 9999999888887653 456678999999751 13467888889999999999999999999999
Q ss_pred CceEEcCCCC----hHHHHHHHHHHHHHHHHH
Q 022525 251 VPVVISAPDS----TVSRAYGEVAVNVVNRLQ 278 (295)
Q Consensus 251 ~~i~~~~~~s----~~~~~~~~l~~~l~~~~~ 278 (295)
.|++++.|.+ +++++|++++++++++..
T Consensus 219 ~pv~~~~~~~~~~~~aa~~~~~la~el~~~~~ 250 (270)
T PRK13185 219 KTLFEMEETDPGLEEVQNEYLRLAEQLLAGPE 250 (270)
T ss_pred CcHhhhCcCCccchHHHHHHHHHHHHHHhcCC
Confidence 9999998864 478999999999876443
No 13
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=100.00 E-value=1e-32 Score=237.31 Aligned_cols=225 Identities=20% Similarity=0.176 Sum_probs=161.0
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccccc-------------CcccccccC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-------------MKMVPIENY 100 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~-------------~~~~~~~~~ 100 (295)
|+|++ ||||||||+++|||++||+ .|+|||+||+|+|++.+..+.|... .++.+. .........
T Consensus 3 ia~~g-KGGVGKTTta~nLA~~La~-~G~rVLlID~DpQ~n~t~~l~g~~~-~~i~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (290)
T CHL00072 3 LAVYG-KGGIGKSTTSCNISIALAR-RGKKVLQIGCDPKHDSTFTLTGFLI-PTIIDTLQSKDYHYEDVWPEDVIYKGYG 79 (290)
T ss_pred EEEEC-CCCCcHHHHHHHHHHHHHH-CCCeEEEEeccCCCcccccccCcCC-CCHHHHHhhcccccccCChhheEEeCCC
Confidence 88876 9999999999999999999 9999999999999865544445422 121110 111112245
Q ss_pred CceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHH
Q 022525 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALID 180 (295)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~ 180 (295)
+++++|.+........ ..........+.+.+..+ ++||||||||++++....+ ...+..||.+|+|+.|+..++.+
T Consensus 80 ~l~lip~~~~~~~~~~-~~~~~~~~~~ll~~l~~~--~~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~~~sl~~ 155 (290)
T CHL00072 80 GVDCVEAGGPPAGAGC-GGYVVGETVKLLKELNAF--YEYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNGFDALFA 155 (290)
T ss_pred CeEEEeCCCCCCccch-hhcccHHHHHHHHHhhcc--ccCCEEEEecCCcceechh-hhhhhcCCEEEEEecCCHHHHHH
Confidence 6777776643322111 000000011122222222 4799999999887653222 34567899999999999999999
Q ss_pred HHHHHHHHhcC----CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEc
Q 022525 181 ARKGITMFSKV----QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVIS 256 (295)
Q Consensus 181 ~~~~~~~l~~~----~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~ 256 (295)
+.++++.++.. +++..++|+|+++. +...+++.+.++.+++..||++..+.++...|+|++++
T Consensus 156 ~~~l~~~i~~~~~~~~l~~~gvv~n~~~~-------------~~~~~~~~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~ 222 (290)
T CHL00072 156 ANRIAASVREKARTHPLRLAGLVGNRTSK-------------RDLIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFEM 222 (290)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEeCCCc-------------hhHHHHHHHHcCCceEEECCCChHHHHHHhCCCceEEe
Confidence 99888777653 45678999999862 13466778888999999999999999999999999999
Q ss_pred CCCCh----HHHHHHHHHHHHHHHHH
Q 022525 257 APDST----VSRAYGEVAVNVVNRLQ 278 (295)
Q Consensus 257 ~~~s~----~~~~~~~l~~~l~~~~~ 278 (295)
.|+++ ++++|.+|+++|+++.+
T Consensus 223 ~p~s~~~~~~a~~y~~La~ell~~~~ 248 (290)
T CHL00072 223 VESEPSLNYVCDYYLNIADQLLSQPE 248 (290)
T ss_pred CCCCcchhHHHHHHHHHHHHHHhCCC
Confidence 99988 58999999999987644
No 14
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.1e-33 Score=221.33 Aligned_cols=234 Identities=21% Similarity=0.292 Sum_probs=182.6
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccc--ccc---C------cccccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEV--TKD---M------KMVPIE 98 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~--~~~---~------~~~~~~ 98 (295)
|+++|.|+|+||||||||+++||+.+||+ +|+||++||+|..--++...+|++..--. .++ . .+....
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~-~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr 79 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQ-LGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKR 79 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHH-cCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhcccc
Confidence 47999999999999999999999999999 99999999999998899999999875222 221 0 111233
Q ss_pred cCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchH
Q 022525 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL 178 (295)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~ 178 (295)
..++.++|+.-.. .-+....+.+..++++|+..+|||||+|||+|+... ...++..||..++|+.|...|+
T Consensus 80 ~~nL~lLPAsQtr-------dKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G--~~~A~~~Ad~AiVVtnPEvSsV 150 (272)
T COG2894 80 LENLFLLPASQTR-------DKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQG--FKNAVYFADEAIVVTNPEVSSV 150 (272)
T ss_pred CCceEeccccccc-------CcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHH--HHhhhhccceEEEEcCCCcccc
Confidence 4455555543111 112234677888888887578999999999999853 3466778999999999999999
Q ss_pred HHHHHHHHHHhcCC----CC---eeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCC
Q 022525 179 IDARKGITMFSKVQ----VP---ILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGV 251 (295)
Q Consensus 179 ~~~~~~~~~l~~~~----~~---~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~ 251 (295)
+++.+.+-.++..+ .. ...+++|++++..-... .. ...+++.+-+.+++++.||.+..+..+.+.|.
T Consensus 151 RDsDRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~G---eM---lsv~Dv~~iL~i~liGiiPed~~Vi~asN~Ge 224 (272)
T COG2894 151 RDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRG---EM---LSVEDVLEILSIPLIGVIPEDQDVLRASNKGE 224 (272)
T ss_pred ccchhheeehhcccchhhcCCcccceEEEEccCHHHhccC---Cc---ccHHHHHHHhCCceEEeecCchhhheecCCCC
Confidence 99999998887654 21 26799999986544322 22 23889999999999999999999999999999
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHHHHHHH
Q 022525 252 PVVISAPDSTVSRAYGEVAVNVVNRLQEL 280 (295)
Q Consensus 252 ~i~~~~~~s~~~~~~~~l~~~l~~~~~~~ 280 (295)
|+... +.+.++.+|++++++|+..--+.
T Consensus 225 Pv~l~-~~~~a~~Ay~d~arRllGe~vp~ 252 (272)
T COG2894 225 PVILD-DNSDAGKAYRDIARRLLGEEVPF 252 (272)
T ss_pred CeEeC-CCchHHHHHHHHHHHHhCCCccc
Confidence 99975 56799999999999998754433
No 15
>PRK13236 nitrogenase reductase; Reviewed
Probab=100.00 E-value=1e-32 Score=238.51 Aligned_cols=235 Identities=21% Similarity=0.219 Sum_probs=169.6
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccC------------cccc
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM------------KMVP 96 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~------------~~~~ 96 (295)
+.+++|+| ++||||||||+|+|||+.||+ +|+||++||+|+|.+++..+++..+..++.+.. ....
T Consensus 4 ~~~~~~~~-~GKGGVGKTt~a~NLA~~La~-~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~ 81 (296)
T PRK13236 4 ENIRQIAF-YGKGGIGKSTTSQNTLAAMAE-MGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVML 81 (296)
T ss_pred cCceEEEE-ECCCcCCHHHHHHHHHHHHHH-CCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhhe
Confidence 34699999 779999999999999999999 999999999999999999888876654443331 1112
Q ss_pred cccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch-hhhhhccCceEEEeeCCCc
Q 022525 97 IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL-TTTQTLQLSGALIVSTPQD 175 (295)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~-~~~~l~~ad~viiv~~~~~ 175 (295)
....+++++|.+..... ....+......+..+.....++.||||+|||++....... ....+..||.+|+|+.|+.
T Consensus 82 ~~~~gv~llpa~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe~ 158 (296)
T PRK13236 82 TGFRGVKCVESGGPEPG---VGCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 158 (296)
T ss_pred eCCCCeEEEECCCCCCC---CCCcceeehhhhHHHHhcCccccCCEEEEeccccceeccccccchhccCCEEEEecCcch
Confidence 33468888887632211 1111111112233333222236899999999754322111 1111458999999999999
Q ss_pred chHHHHHHHHHHH----hcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCC
Q 022525 176 VALIDARKGITMF----SKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGV 251 (295)
Q Consensus 176 ~s~~~~~~~~~~l----~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~ 251 (295)
.++.++.++++.+ +..+.++.|+|+||.+.. . .....+++.+.++..++++||++..+.++...|+
T Consensus 159 ~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~------~----~~~ile~l~~~~g~~vl~~Ip~~~~v~eA~~~~~ 228 (296)
T PRK13236 159 MAMYAANNIARGILKYAHTGGVRLGGLICNSRNVD------R----EIELIETLAKRLNTQMIHFVPRDNIVQHAELRRM 228 (296)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCCc------c----hHHHHHHHHHHhCccceeeCCCChHHHHHHHcCC
Confidence 9998887554433 345678889999974210 0 0134678888899889999999999999999999
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHHHHH
Q 022525 252 PVVISAPDSTVSRAYGEVAVNVVNRLQ 278 (295)
Q Consensus 252 ~i~~~~~~s~~~~~~~~l~~~l~~~~~ 278 (295)
|++++.|+++++++|.+++++++.+++
T Consensus 229 Pv~~~~p~s~~a~~y~~La~ell~~~~ 255 (296)
T PRK13236 229 TVNEYAPDSNQGNEYRALAKKIINNDN 255 (296)
T ss_pred ChhhcCCCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988764
No 16
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=100.00 E-value=1.3e-32 Score=236.63 Aligned_cols=234 Identities=23% Similarity=0.246 Sum_probs=164.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccC-----------cccccccC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM-----------KMVPIENY 100 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~ 100 (295)
++|+|+ +||||||||+|+|||++||+ .|+||++||+|+|+++...+++..+..++.+.. ........
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~-~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 78 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAE-MGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFG 78 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCC
Confidence 478997 59999999999999999999 999999999999997766665644443332221 11122244
Q ss_pred CceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch-hhhhhccCceEEEeeCCCcchHH
Q 022525 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL-TTTQTLQLSGALIVSTPQDVALI 179 (295)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~-~~~~l~~ad~viiv~~~~~~s~~ 179 (295)
++++++.+...+.. ............+.+.+..+. ++||||||||++......+ ....+..||.+|+|+.|+..++.
T Consensus 79 ~l~~i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~-~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~ 156 (275)
T TIGR01287 79 GIRCVESGGPEPGV-GCAGRGVITAINLLEELGAYE-DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALY 156 (275)
T ss_pred CEEEEeCCCCCccC-CCccchhhhHHHHHHHhhhhh-ccCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHH
Confidence 67777665433221 111111111111222345566 7899999999765532111 11223478999999999999999
Q ss_pred HHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEE
Q 022525 180 DARKGITMFSK----VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVI 255 (295)
Q Consensus 180 ~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~ 255 (295)
++.++++.+.+ .+.++.++|.|+... ....+..+++.+.++.++++.||++..+.+|...|+|+++
T Consensus 157 ~~~~l~~~i~~~~~~~~~~~~giv~n~~~~----------~~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~ 226 (275)
T TIGR01287 157 AANNICKGILKYAKSGGVRLGGLICNSRNV----------DDEKELIDEFAKKLGTQLIHFVPRSNIVQKAEIRKMTVIE 226 (275)
T ss_pred HHHHHHHHHHHHHhcCCCeeeEEEEcCCCC----------chHHHHHHHHHHHhCCceEEECCCChHHHHHHHcCCceEE
Confidence 98887665432 356677788776321 0112346788888898888999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHH
Q 022525 256 SAPDSTVSRAYGEVAVNVVNRLQE 279 (295)
Q Consensus 256 ~~~~s~~~~~~~~l~~~l~~~~~~ 279 (295)
+.|.++++++|++++++++++.+.
T Consensus 227 ~~p~s~~a~~~~~la~ell~~~~~ 250 (275)
T TIGR01287 227 YDPESEQANEYRELAKKIYENTEF 250 (275)
T ss_pred eCCCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999887544
No 17
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=100.00 E-value=2.9e-33 Score=230.38 Aligned_cols=231 Identities=21% Similarity=0.184 Sum_probs=172.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC--cccccc-------CcccccccCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK--PEVTKD-------MKMVPIENYG 101 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~--~~~~~~-------~~~~~~~~~~ 101 (295)
||+|+|.|.||||||||+++|||+.|++ .|++|++||+|||+ .+...||++.. .++... ....-....+
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~-~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g 78 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALAR-LGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDG 78 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCC
Confidence 6899999999999999999999999999 99999999999997 88889998753 333211 1111223467
Q ss_pred ceeeccccccCCCCCCccCCchHHHHHHHHHHhcc-CCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHH
Q 022525 102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD-WGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALID 180 (295)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~ 180 (295)
+.++|.|.+..........-......+.+.+..+. ...||+||||||++.+ .+....+..||.+++|+.|+..+...
T Consensus 79 ~~~LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~--~~~~~al~~aD~vL~V~~~Da~s~~~ 156 (243)
T PF06564_consen 79 VDFLPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPS--PYTRQALAAADLVLVVVNPDAASHAR 156 (243)
T ss_pred CEEEcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCc--HHHHHHHHhCCeEEEEeCCCHHHHHH
Confidence 88888775432221100000011345566666665 4789999999999988 67778888899999999999987644
Q ss_pred HHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCCC
Q 022525 181 ARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDS 260 (295)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~s 260 (295)
+.+ . .-..-..+|+|+++.. +.++++...-..+.++..+.++|++|+.+.+|...+.|+.+++|.|
T Consensus 157 L~q---~---~l~~~~~~liNq~~~~--------s~l~~D~~~~~~~~l~~llp~~IHrDeAv~EAlA~~~~v~~yaP~S 222 (243)
T PF06564_consen 157 LHQ---R---ALPAGHRFLINQYDPA--------SQLQRDLLQVWRQSLGRLLPGVIHRDEAVAEALASGQPVGEYAPHS 222 (243)
T ss_pred HHH---h---cccCCcEEEEeccCcc--------chHHHHHHHHHHHhhccccceeeecchHHHHHHhcCCCccccCccC
Confidence 332 1 1111247999999843 3444566666667777666679999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 022525 261 TVSRAYGEVAVNVVNRLQE 279 (295)
Q Consensus 261 ~~~~~~~~l~~~l~~~~~~ 279 (295)
.++++++.||.+++.+..+
T Consensus 223 ~Aa~D~~~LA~W~l~~~~~ 241 (243)
T PF06564_consen 223 QAAEDIQTLANWCLSHLAG 241 (243)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999988754
No 18
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=100.00 E-value=7.3e-33 Score=248.27 Aligned_cols=235 Identities=17% Similarity=0.143 Sum_probs=167.7
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccc------cc----------
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT------KD---------- 91 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~------~~---------- 91 (295)
.+.+++|+|.|.||||||||+|+|||+.||+ .|+|||+||+|+|+ +++.++|..++.... +.
T Consensus 118 ~~~~~vIav~n~KGGvGKTTta~nLA~~LA~-~G~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~ 195 (405)
T PRK13869 118 SEHLQVIAVTNFKGGSGKTTTSAHLAQYLAL-QGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPL 195 (405)
T ss_pred CCCceEEEEEcCCCCCCHHHHHHHHHHHHHh-cCCceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCH
Confidence 4457999999999999999999999999999 99999999999996 777888876532211 00
Q ss_pred -CcccccccCCceeeccccccCCCCC--------CccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhc
Q 022525 92 -MKMVPIENYGVKCMSMGFLVPSSSP--------VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL 162 (295)
Q Consensus 92 -~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~ 162 (295)
..+.+....+++++|.+........ ....+......+...++.+. +.||||||||||+++ ..+..++.
T Consensus 196 ~~~i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~--~~t~~al~ 272 (405)
T PRK13869 196 RDVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLG--FLTLSGLC 272 (405)
T ss_pred HHheeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchh--HHHHHHHH
Confidence 0111233456777775431111000 00011112345778888887 899999999999998 67888899
Q ss_pred cCceEEEeeCCCcchHHHHHHHHHH-------HhcC--C--CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCC
Q 022525 163 QLSGALIVSTPQDVALIDARKGITM-------FSKV--Q--VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGL 231 (295)
Q Consensus 163 ~ad~viiv~~~~~~s~~~~~~~~~~-------l~~~--~--~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 231 (295)
+||.+|+|+.|+..++.++..+++. +++. + ...+++|+|+++.+.. .+.+..+.+.+.+|.
T Consensus 273 aAd~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~~--------~~~~~~~~l~~~~~~ 344 (405)
T PRK13869 273 AATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQDA--------PQTKVAALLRNMFED 344 (405)
T ss_pred HcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCCc--------HHHHHHHHHHHHhhh
Confidence 9999999999999998888877753 2222 2 3467899999984321 123557778888887
Q ss_pred cEE-EeecCCccccccccCCCceEEcCCCChHHHHHHHHHHHHHH
Q 022525 232 KVI-GEIPIEMDIRKGSDDGVPVVISAPDSTVSRAYGEVAVNVVN 275 (295)
Q Consensus 232 ~~~-~~Ip~~~~~~~a~~~g~~i~~~~~~s~~~~~~~~l~~~l~~ 275 (295)
.++ ..||++..+.++...|.|++++.|.+...+.|.+..+.+.+
T Consensus 345 ~vl~~~I~~s~ai~~a~~~~~tv~e~~~~~~~~~~y~ra~~~~~~ 389 (405)
T PRK13869 345 HVLTNPMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESLDA 389 (405)
T ss_pred hhccCcCcchHHHHhhHhcCCChhhcCCCcCCHHHHHHHHHHHHH
Confidence 666 58999999999999999999998875444444444433333
No 19
>PHA02518 ParA-like protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=227.90 Aligned_cols=204 Identities=20% Similarity=0.223 Sum_probs=155.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccccc
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (295)
++|+|+|.||||||||+|+|||++|++ +|++|++||+|+|++. ..+++...... +.++...
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~-~g~~vlliD~D~q~~~-~~~~~~~~~~~---------------~~i~~~~-- 61 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHA-DGHKVLLVDLDPQGSS-TDWAEAREEGE---------------PLIPVVR-- 61 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCh-HHHHHhcccCC---------------CCCchhh--
Confidence 589999999999999999999999999 9999999999999854 44443221100 1111100
Q ss_pred CCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcC
Q 022525 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV 191 (295)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~ 191 (295)
. ...+...+..+. ..||||||||||+.+ ......+..||.+|+|+.|+..++..+.++++.++..
T Consensus 62 --------~----~~~~~~~l~~~~-~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~ 126 (211)
T PHA02518 62 --------M----GKSIRADLPKVA-SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKAR 126 (211)
T ss_pred --------c----cHHHHHHHHHHh-ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHH
Confidence 0 123455556666 899999999999987 5677888899999999999999999888887766542
Q ss_pred -----CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEE-eecCCccccccccCCCceEEcCCCChHHHH
Q 022525 192 -----QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIG-EIPIEMDIRKGSDDGVPVVISAPDSTVSRA 265 (295)
Q Consensus 192 -----~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~Ip~~~~~~~a~~~g~~i~~~~~~s~~~~~ 265 (295)
+.+..++|.|+++.... .. ....+..+.++.+++. .++++..+.++...|.+++++.|.++++++
T Consensus 127 ~~~~~~~~~~~iv~n~~~~~~~--------~~-~~~~~~l~~~~~~~~~~~i~~~~~~~~a~~~g~~v~~~~~~~~a~~~ 197 (211)
T PHA02518 127 QEVTDGLPKFAFIISRAIKNTQ--------LY-REARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLELPEDDKAAEE 197 (211)
T ss_pred HhhCCCCceEEEEEeccCCcch--------HH-HHHHHHHHHcCchhhhchhhhHHHHHHHHhcCCceEecCCCchHHHH
Confidence 45667788898753211 01 2355555666777775 566778899999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 022525 266 YGEVAVNVVNRLQ 278 (295)
Q Consensus 266 ~~~l~~~l~~~~~ 278 (295)
|.+++++++++++
T Consensus 198 ~~~l~~ei~~~~~ 210 (211)
T PHA02518 198 IIQLVKELFRGIS 210 (211)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998875
No 20
>PRK10037 cell division protein; Provisional
Probab=100.00 E-value=4.6e-33 Score=235.82 Aligned_cols=229 Identities=12% Similarity=0.060 Sum_probs=156.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCc--cccc-------cCcccccccCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTK-------DMKMVPIENYG 101 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~--~~~~-------~~~~~~~~~~~ 101 (295)
|++|+|.|.||||||||+|+|||+.||+ +|+||++||+|+|+ +++..||.+... ++.+ ..........+
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~-~G~rVLlID~D~q~-~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQM-LGENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQ 78 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHh-cCCcEEEEeCChhh-hHHHHhCCCccccchHHHHHhcCCCchhhhccccCC
Confidence 5799999999999999999999999999 99999999999996 666677765422 1111 00000111346
Q ss_pred ceeeccccccCCCCCCccCCchHHHHHHHHHHhccC-CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHH
Q 022525 102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALID 180 (295)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~ 180 (295)
++++|.+.+.................+...++.++. +.||||||||||+.+ ......+..||.+|+|+.|+..+.
T Consensus 79 l~iip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~~~~~-- 154 (250)
T PRK10037 79 LDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVDANCH-- 154 (250)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcCHHHH--
Confidence 666665421100000000000011235566666641 579999999999988 567788889999999999987653
Q ss_pred HHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHH---hCCcEEE-eecCCccccccccCCCceEEc
Q 022525 181 ARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAE---MGLKVIG-EIPIEMDIRKGSDDGVPVVIS 256 (295)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~-~Ip~~~~~~~a~~~g~~i~~~ 256 (295)
++..+......+.+++|+++.. ....+++.+. .+.+++. .||++..+.++...|+|++++
T Consensus 155 ----i~~~~~~~~~~~~i~~n~~~~~------------~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~a~~~g~~v~~~ 218 (250)
T PRK10037 155 ----IRLHQQALPAGAHILINDLRIG------------SQLQDDLYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPLGEY 218 (250)
T ss_pred ----HhhhccccCCCeEEEEecCCcc------------cHHHHHHHHHHHHhcccccCccccCchhHHHHHhcCCcchhc
Confidence 3333222222345788887511 1223333333 2556664 899999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Q 022525 257 APDSTVSRAYGEVAVNVVNRLQELA 281 (295)
Q Consensus 257 ~~~s~~~~~~~~l~~~l~~~~~~~~ 281 (295)
.|+++++++|++++.++++.++..+
T Consensus 219 ~~~s~aa~~~~~l~~el~~~~~~~~ 243 (250)
T PRK10037 219 RSDSLAAEEILTLANWCLLHYSGLK 243 (250)
T ss_pred CCcCHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999887654
No 21
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=100.00 E-value=8e-33 Score=232.23 Aligned_cols=236 Identities=27% Similarity=0.365 Sum_probs=181.3
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcc-ccccC-------cccccc-cC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE-VTKDM-------KMVPIE-NY 100 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~-~~~~~-------~~~~~~-~~ 100 (295)
++++|+|.|+||||||||+++||+..+++..|++|++||+|...++++.++|+.+... +.+.. +..-.. ..
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~ 80 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQD 80 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcC
Confidence 3699999999999999999999966666537888899999999999999999998555 44431 111111 26
Q ss_pred CceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHH
Q 022525 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALID 180 (295)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~ 180 (295)
++.++|.+...... .....+.+..++..+. ..|||||+|||+|++.. +...+..+|.+|+|++|+..++.+
T Consensus 81 gl~vipg~~~~~~~------~~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~--~~~~~~~sd~~viVt~pe~~si~~ 151 (262)
T COG0455 81 GLYVLPGGSGLEDL------AKLDPEDLEDVIKELE-ELYDYILIDTGAGLSRD--TLSFILSSDELVIVTTPEPTSITD 151 (262)
T ss_pred CEEEeeCCCChHHH------hhcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHH--HHHHHHhcCcEEEEeCCCcchHHH
Confidence 77777765322222 2233577888888888 88999999999999953 345566789999999999999999
Q ss_pred HHHHHHHHhcCCCCeee--EEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCC
Q 022525 181 ARKGITMFSKVQVPILG--LVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAP 258 (295)
Q Consensus 181 ~~~~~~~l~~~~~~~~~--~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~ 258 (295)
+..+++++.+.+.+..+ +|+|++...... ........+... ..+.+..+|+++.+.++...|.|+...+|
T Consensus 152 A~~~i~~~~~~~~~~~~~~vV~N~v~~~~e~------~~~~~~~~~~~~--~~~~~~~i~~~~~v~~a~~~g~p~~~~~p 223 (262)
T COG0455 152 AYKTIKILSKLGLDLLGRRVVLNRVRSTKEG------VDVAALLIQVVK--QVPVLQVIPFDPEVRRALAEGKPIVLYSP 223 (262)
T ss_pred HHHHHHHHHHcCCccccceEEEEecccccch------hHHHHHHHHHHH--hCCceeEeccChHHHHHhhcCCcEEEeCC
Confidence 99999999999988777 999999622110 000111233333 33477899999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 022525 259 DSTVSRAYGEVAVNVVNRLQELAK 282 (295)
Q Consensus 259 ~s~~~~~~~~l~~~l~~~~~~~~~ 282 (295)
++++++++.+++..+.+.......
T Consensus 224 ~s~as~ai~~lA~~l~~~~~~~~~ 247 (262)
T COG0455 224 NSKASQAIKELAAKLAGLPEPKAP 247 (262)
T ss_pred CCHHHHHHHHHHHHHhcccccCCc
Confidence 999999999999999997655543
No 22
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=8.1e-33 Score=236.43 Aligned_cols=233 Identities=22% Similarity=0.266 Sum_probs=168.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccccc---------CcccccccCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD---------MKMVPIENYG 101 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~ 101 (295)
|++|+|. +||||||||+|+|||++||+ .| |||+||+|+|++.+..+++... .++.+. .........+
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~-~G-rVLliD~Dpq~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSN-DH-RVLVIGCDPKADTTRTLCGKRI-PTVLDTLKDNRKPELEDIIHEGFNG 77 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCC-CC-EEEEEeEccCcccchhhhcCCc-cHHHHHHhhcCCCChhHhheeCCCC
Confidence 6899999 69999999999999999999 99 9999999999866655555432 222111 1111222345
Q ss_pred ceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchh-hhhhccCceEEEeeCCCcchHHH
Q 022525 102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT-TTQTLQLSGALIVSTPQDVALID 180 (295)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~-~~~l~~ad~viiv~~~~~~s~~~ 180 (295)
+.+++.+..... .............+.+.+..+. +.||||||||++.+....+. ...+..||.+|+|+.|+..++.+
T Consensus 78 l~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~-~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~ 155 (264)
T PRK13231 78 ILCVESGGPEPG-VGCAGRGVIVAMNLLENLGVFD-EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYA 155 (264)
T ss_pred eEEEEcCCCCCC-CCCcCceeeehhhhHHhhcccc-CCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHH
Confidence 666665532221 1111111111123445556666 88999999998755321111 11124789999999999999999
Q ss_pred HHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCCC
Q 022525 181 ARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDS 260 (295)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~s 260 (295)
+.++++.++..+....++|.|+++.. . .....+++.+.++..+++.||++..+.++...|+|++++.|.+
T Consensus 156 ~~~~~~~i~~~~~~~~~vv~~~~~~~-------~---~~~~~~~l~~~~~~~vl~~I~~~~~v~~a~~~g~~v~~~~~~~ 225 (264)
T PRK13231 156 ANNIARGIKKLKGKLGGIICNCRGID-------N---EVEIVSEFASRIGSRIIGVIPRSNLVQESELDAKTVVETFPES 225 (264)
T ss_pred HHHHHHHHHHcCCcceEEEEcCCCCc-------c---HHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHcCCceeEeCCCC
Confidence 99999998877666667888875421 0 2345788888899888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 022525 261 TVSRAYGEVAVNVVNRLQE 279 (295)
Q Consensus 261 ~~~~~~~~l~~~l~~~~~~ 279 (295)
+++++|.+++++|+++++.
T Consensus 226 ~aa~~~~~la~el~~~~~~ 244 (264)
T PRK13231 226 EQASVYRKLANNIMNNTEF 244 (264)
T ss_pred hHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998753
No 23
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=3.7e-32 Score=234.93 Aligned_cols=230 Identities=23% Similarity=0.227 Sum_probs=166.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccC------------cccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM------------KMVPIE 98 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~------------~~~~~~ 98 (295)
+++|+|. +||||||||+++|||+.||+ .|+|||+||+|+|.+++..+++.....++.+.. ......
T Consensus 4 ~~~iai~-~KGGvGKTt~~~nLa~~la~-~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (295)
T PRK13234 4 LRQIAFY-GKGGIGKSTTSQNTLAALVE-MGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIG 81 (295)
T ss_pred ceEEEEE-CCCCccHHHHHHHHHHHHHH-CCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHheec
Confidence 6999997 99999999999999999999 999999999999998887666654433322211 111223
Q ss_pred cCCceeeccccccCCCCCCccCCchHHHHHH-HHHHhcc-CCCccEEEEcCCCCCCccchhhhhh--ccCceEEEeeCCC
Q 022525 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALR-KMSREVD-WGNLDILVIDMPPGTGDAQLTTTQT--LQLSGALIVSTPQ 174 (295)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~-~~~yD~iiiD~~~~~~~~~~~~~~l--~~ad~viiv~~~~ 174 (295)
..+++++|.+..... .....++ ..++ ..++.+. .+.||||||||++++....+ ...+ ..||.+|+|+.++
T Consensus 82 ~~gl~lipa~~~~~~-~~~~~~~----~~l~~~~l~~~~~~~~yD~IlID~~~~~~~nal-~~~~~~~aAD~vIIPv~pe 155 (295)
T PRK13234 82 YKGIKCVESGGPEPG-VGCAGRG----VITSINFLEENGAYDDVDYVSYDVLGDVVCGGF-AMPIRENKAQEIYIVMSGE 155 (295)
T ss_pred CCCeEEEECCCCCCC-CCCCcce----eeeHHHHHHHcCCCccCCEEEEEcCCCceECCC-ccccccccCceEEEecCcc
Confidence 467888877542221 1111111 1222 2444432 16899999999654332111 1111 2799999999999
Q ss_pred cchHHHHHHHHHHHhcC----CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCC
Q 022525 175 DVALIDARKGITMFSKV----QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDG 250 (295)
Q Consensus 175 ~~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g 250 (295)
.+++.++.++++.+.+. +++..|+|+|+... . ......+++.+.++.++++.||++..+.++...|
T Consensus 156 ~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt-------~---~~~~~~e~l~e~~g~~ll~~Ip~d~~V~eA~~~g 225 (295)
T PRK13234 156 MMALYAANNIAKGILKYANSGGVRLGGLICNERQT-------D---RELELAEALAARLGSKLIHFVPRDNIVQHAELRR 225 (295)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC-------c---hHHHHHHHHHHHhCCceEEECCCchHHHHHHHcC
Confidence 99999999888777643 46678999996431 1 1124567777888988889999999999999999
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHHHHH
Q 022525 251 VPVVISAPDSTVSRAYGEVAVNVVNRLQ 278 (295)
Q Consensus 251 ~~i~~~~~~s~~~~~~~~l~~~l~~~~~ 278 (295)
+|++++.|.++++++|.+++++++++.+
T Consensus 226 ~pv~~~~p~s~aa~~y~~La~ell~~~g 253 (295)
T PRK13234 226 MTVIEYAPDSKQAGEYRALAEKIHANSG 253 (295)
T ss_pred CceEEECCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999988754
No 24
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=3.5e-32 Score=234.19 Aligned_cols=236 Identities=23% Similarity=0.240 Sum_probs=160.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccC-----------ccccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM-----------KMVPIEN 99 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~ 99 (295)
|++|+|+ +||||||||+|+|||++||+ +|+|||+||+|+|++....+.+ ....++.+.. .......
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~-~G~rVLliD~Dpq~n~t~~l~~-~~~~~l~d~~~~~~~~~~~~~~~i~~~~ 77 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAE-SGKKVLVVGCDPKADCTRNLVG-EKIPTVLDVLREKGIDNLGLEDIIYEGF 77 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHh-CCCEEEEEeeCCcccccccccC-ccCCCHHHHHHhcCCCCCCHHHheeeCC
Confidence 5899999 69999999999999999999 9999999999999866554433 2222222111 0111123
Q ss_pred CCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccc-hhhhhhccCceEEEeeCCCcchH
Q 022525 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ-LTTTQTLQLSGALIVSTPQDVAL 178 (295)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~-~~~~~l~~ad~viiv~~~~~~s~ 178 (295)
.+++++|.+...... ............+...+..+....||||||||++++.... .....+..||.+|+|+.|+..++
T Consensus 78 ~~l~lipa~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si 156 (279)
T PRK13230 78 NGIYCVESGGPEPGY-GCAGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAI 156 (279)
T ss_pred CCcEEEECCCCCCCC-CcCCcchhhHHHHHHHcCcccccCCCEEEEecCCccccCCccccccccccceEEEeccchHHHH
Confidence 567777765332211 1111111111111222223322479999999987553211 22223456999999999999999
Q ss_pred HHHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceE
Q 022525 179 IDARKGITMFSK----VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVV 254 (295)
Q Consensus 179 ~~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~ 254 (295)
.++..+++.+.. .+..+.++|.|+-. . .......+++++.++.++++.||++..+.++...|+|+.
T Consensus 157 ~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~--------~--~~~~~~~e~l~~~~g~~vl~~Ip~~~~v~eA~~~g~pv~ 226 (279)
T PRK13230 157 YAANNICKGIKRFAKRGKSALGGIIYNGRS--------V--IDAPDIVEEFAKKIGTNVIGKIPMSNIITEAEIYGKTVI 226 (279)
T ss_pred HHHHHHHHHHHHHhhcCCCcceEEEEeccC--------C--CchhHHHHHHHHHhCCcEEEECCCChHHHHHHHcCCeEE
Confidence 999877776643 35556666654211 0 001245788888999999999999999999999999999
Q ss_pred EcCCCChHHHHHHHHHHHHHHHHHHH
Q 022525 255 ISAPDSTVSRAYGEVAVNVVNRLQEL 280 (295)
Q Consensus 255 ~~~~~s~~~~~~~~l~~~l~~~~~~~ 280 (295)
++.|.++++++|.+++++++++.+.+
T Consensus 227 ~~~p~~~~a~~y~~La~ell~~~~~~ 252 (279)
T PRK13230 227 EYAPDSEISNIFRELAEAIYENNTGT 252 (279)
T ss_pred EeCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999875533
No 25
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=100.00 E-value=2.2e-32 Score=234.16 Aligned_cols=225 Identities=22% Similarity=0.206 Sum_probs=159.2
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccccc-------------Cccccccc
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-------------MKMVPIEN 99 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~-------------~~~~~~~~ 99 (295)
+|+|. +||||||||+|+|||++||+ +|+|||+||+|+|++ +...++.....++.+. ........
T Consensus 2 ~i~v~-gKGGvGKTT~a~nLA~~la~-~G~rvlliD~Dpq~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~ 78 (267)
T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALAK-RGKKVLQIGCDPKHD-STFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGY 78 (267)
T ss_pred EEEEe-cCCCCCHHHHHHHHHHHHHH-CCCcEEEEecCCCCC-cceeccCCCCCCHHHHHHhccccccCCChhheEEECC
Confidence 58888 59999999999999999999 999999999999974 4445543222222211 11111223
Q ss_pred CCceeeccccccCCCCCCccCCchHHHHHHHHHHh--ccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch
Q 022525 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSRE--VDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA 177 (295)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s 177 (295)
.++++++.+...... .... ...... ..+++. +. ++||||||||++++... .....+..||.+|+|+.|+..+
T Consensus 79 ~~l~~i~~~~~~~~~-~~~~--~~~~~~-~~~~~~~~~~-~~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~ 152 (267)
T cd02032 79 GGVDCVEAGGPPAGA-GCGG--YVVGET-VKLLKELNLF-EEYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDS 152 (267)
T ss_pred CCcEEEEcCCCCCCc-cccc--hHHHHH-HHHHHHcccc-ccCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCccc
Confidence 577777765422111 1111 001111 122222 34 68999999998876532 2234467899999999999999
Q ss_pred HHHHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCce
Q 022525 178 LIDARKGITMFSK----VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPV 253 (295)
Q Consensus 178 ~~~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i 253 (295)
+..+.++++.++. .+++..++|+|+++. ....+++.+.++.++++.||++..+.++...|.|+
T Consensus 153 l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~-------------~~~i~~~~~~~~~~vl~~Ip~~~~v~~A~~~G~~v 219 (267)
T cd02032 153 IFAANRIAAAVREKAKTYKVRLAGLIANRTDK-------------TDLIDKFVEAVGMPVLAVLPLIEDIRRSRVKGKTL 219 (267)
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEEEeCCCH-------------HHHHHHHHHhCCCCEEEEecCCccccHHHHcCCCH
Confidence 9998888876653 356778899999862 12356778888999999999999999999999999
Q ss_pred EEcCCCChH----HHHHHHHHHHHHHHHHH
Q 022525 254 VISAPDSTV----SRAYGEVAVNVVNRLQE 279 (295)
Q Consensus 254 ~~~~~~s~~----~~~~~~l~~~l~~~~~~ 279 (295)
+++.|.++. +++|.+|++++++..+.
T Consensus 220 ~e~~~~~~~a~e~a~~y~~La~~il~~~~~ 249 (267)
T cd02032 220 FEMDESDEELAYRCDYYLLIADQLLAGPEG 249 (267)
T ss_pred HHhCcccccccHHHHHHHHHHHHHHhcCCC
Confidence 999887765 57799999988765443
No 26
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=100.00 E-value=3.8e-32 Score=232.80 Aligned_cols=227 Identities=22% Similarity=0.249 Sum_probs=159.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccC-------------ccccccc
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM-------------KMVPIEN 99 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~ 99 (295)
+|+|. +||||||||+|+|||++||+ +|+|||+||+|+|++. +..++.....++.+.. .......
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~-~g~rVLliD~D~q~~~-~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ 78 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAK-LGKRVLQIGCDPKHDS-TFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGY 78 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHh-CCCeEEEEecCccccc-cceecCCCCCcHHHHHHhccccccCCCHHHeeEeCC
Confidence 58888 79999999999999999999 9999999999999844 4455422222222211 1111223
Q ss_pred CCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHH
Q 022525 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI 179 (295)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~ 179 (295)
.++++++.+...................++. + .+. +.||||||||++++..... ...+..||.+++|+.++..++.
T Consensus 79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~-~~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~~~sl~ 154 (268)
T TIGR01281 79 GGVDCVEAGGPPAGSGCGGYVVGETVKLLKE-H-HIL-DDYDVILFDVLGDVVCGGF-ATPLQYADYALVVAANDFDALF 154 (268)
T ss_pred CCeEEEecCCCCCCCcccceehhhhHHHhhh-c-ccc-ccCCEEEEecCCccccCcc-ccchhhcCEEEEEecCchhHHH
Confidence 5677776653222111000000001122222 1 234 6899999999877653222 2456789999999999999999
Q ss_pred HHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEE
Q 022525 180 DARKGITMFSK----VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVI 255 (295)
Q Consensus 180 ~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~ 255 (295)
++.++++.+.. .+++..++|+|+++.+ ...+++.+.++.++++.||++..+.++...|.|+++
T Consensus 155 ~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-------------~~~~~~~~~~~~~vl~~I~~~~~v~~A~~~G~pV~~ 221 (268)
T TIGR01281 155 AANRIAASVQEKAKNYDVRLAGIIGNRSDAT-------------DLIERFNERVGMPVLGVVPDLEVIRRSRVKGKTLFE 221 (268)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEeCCChH-------------HHHHHHHHHcCCCEEEEcCCChHHHHHHHCCCCHHH
Confidence 98888876654 3567789999998732 346677778899999999999999999999999999
Q ss_pred cCCCCh----HHHHHHHHHHHHHHHHHH
Q 022525 256 SAPDST----VSRAYGEVAVNVVNRLQE 279 (295)
Q Consensus 256 ~~~~s~----~~~~~~~l~~~l~~~~~~ 279 (295)
+.|.++ .+++|++++++++++.+.
T Consensus 222 ~~~~~~~~~~~a~~~~~la~el~~~~~~ 249 (268)
T TIGR01281 222 MEESGPELAAVTQEYLRMAEYLLAGPEG 249 (268)
T ss_pred hCcccccchHHHHHHHHHHHHHHhcCCC
Confidence 987653 678899999999876443
No 27
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.98 E-value=2.7e-31 Score=236.14 Aligned_cols=258 Identities=19% Similarity=0.140 Sum_probs=175.7
Q ss_pred chhhhhhhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe-CCCCCCccccccc
Q 022525 4 SFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA-DVYGPSVPMMMKI 82 (295)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~-D~~~~~~~~~~g~ 82 (295)
.|++.+-.. +|..+..... .+....+++|+|+|.||||||||+|+|||+.||. +|+|||+||+ |+|+ +++.++|.
T Consensus 81 ~ytl~eI~~-lr~~~~~~~~-r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~-~G~rVLlIDl~DpQ~-nlt~~~g~ 156 (387)
T PHA02519 81 GYTIDQISH-MRDHFGNPNQ-RPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLAL-QGHRVLLIEGNDPQG-TASMYHGY 156 (387)
T ss_pred eEcHHHHHH-HHHHhhcccc-CcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHh-CCCcEEEEeCCCCCC-CcccccCc
Confidence 566655544 3433332111 1233447999999999999999999999999999 9999999996 9998 56678887
Q ss_pred CCCcccccc---------------CcccccccCCceeeccccccCCC-------CCCccCCchHHHHHHHHHHhccCCCc
Q 022525 83 DQKPEVTKD---------------MKMVPIENYGVKCMSMGFLVPSS-------SPVVWRGPMVMSALRKMSREVDWGNL 140 (295)
Q Consensus 83 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~l~~~~y 140 (295)
.++..+.+. ..+.+....+++++|.+...... .............+...++.+. +.|
T Consensus 157 ~~~~~~~~~~tl~~~~~~~~~~~~~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~Y 235 (387)
T PHA02519 157 VPDLHIHADDTLLPFYLGERDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNY 235 (387)
T ss_pred CccccccccccHHHHHhCCCcchHhheecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccC
Confidence 653221110 11122334667777765311100 0000000012345777788887 899
Q ss_pred cEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhc-------CC-CCeeeEEeccccCCCCCCCC
Q 022525 141 DILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSK-------VQ-VPILGLVENMSCFICPHCSE 212 (295)
Q Consensus 141 D~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~-------~~-~~~~~~ViN~~~~~~~~~~~ 212 (295)
|||||||||.++ ..+.+++.+||.+|+|+.++..++.++..+++.+.. .+ .+.+.+++|+++.+..
T Consensus 236 D~IlID~pPslg--~lt~nAL~AAd~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~---- 309 (387)
T PHA02519 236 DIIVIDSAPNLG--TGTINVVCAADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTVG---- 309 (387)
T ss_pred CEEEEECCCCcc--HHHHHHHHHhCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCCc----
Confidence 999999999998 678889999999999999999998887766655522 12 2345689999984311
Q ss_pred CccccCCchhhHHHHHhCCcEEE-eecCCccccccccCCCceEEcCCCC--------hHHHHHHHHHHHHHH
Q 022525 213 PSFIFGKGGTHRTAAEMGLKVIG-EIPIEMDIRKGSDDGVPVVISAPDS--------TVSRAYGEVAVNVVN 275 (295)
Q Consensus 213 ~~~~~~~~~~~~~~~~~g~~~~~-~Ip~~~~~~~a~~~g~~i~~~~~~s--------~~~~~~~~l~~~l~~ 275 (295)
...+...+.+.+.+|..++. .||.+..+.+|...+++++++.+.+ .+.+.+..++.+|++
T Consensus 310 ---~~~~~i~~~l~~~~g~~vl~~~I~~s~~i~~a~~~~~ti~e~~~~~~~~~~~~~r~~~~~~~~~~ei~~ 378 (387)
T PHA02519 310 ---NQSRWMEEQIRNTWGSMVLRQVVRVTDEVGKGQIKMRTVFEQAANQRSTLNAWRNAVAIWEPVCAEIFN 378 (387)
T ss_pred ---hHHHHHHHHHHHHhccccccccCcCcchHhhchhcCCChhhCccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 11122456788888887764 8999999999999999999987654 245566666666666
No 28
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.98 E-value=9.5e-32 Score=229.29 Aligned_cols=238 Identities=24% Similarity=0.324 Sum_probs=170.8
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC--cccccc----------Cccccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK--PEVTKD----------MKMVPI 97 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~--~~~~~~----------~~~~~~ 97 (295)
++++|+|+|.||||||||+|+|||.+||...|+|||+||+|||+ +++.++|.... ....+. .....
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG-SLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTV- 78 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcc-hhhHhcCCCcccchhHHHHHhcccccccchhccc-
Confidence 47999999999999999999999999995267999999999995 77788888765 000000 00001
Q ss_pred ccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch
Q 022525 98 ENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA 177 (295)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s 177 (295)
...+++++|.....................++.+++.+. ++||||||||||+++ ..+..++.++|.+++|+.++..+
T Consensus 79 ~~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~yD~iiID~pp~l~--~l~~nal~asd~vlIP~~~~~~~ 155 (259)
T COG1192 79 VIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVK-DDYDYIIIDTPPSLG--VLTLNALAAADHVLIPVQPEFLD 155 (259)
T ss_pred CCCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhhc-cCCCEEEECCCCchh--HHHHHHHHHcCeeEEecCchHHH
Confidence 223444544332111100000000112234455555555 799999999999997 77888899999999999999999
Q ss_pred HHHHHHHHHHHhcC---C---CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE-EeecCCccccccccCC
Q 022525 178 LIDARKGITMFSKV---Q---VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI-GEIPIEMDIRKGSDDG 250 (295)
Q Consensus 178 ~~~~~~~~~~l~~~---~---~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~Ip~~~~~~~a~~~g 250 (295)
+.++..+++.+... + ....++++|+++..... ..+..+...+.++.+++ ..||.+..+.++...|
T Consensus 156 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~g 227 (259)
T COG1192 156 LEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKL--------ADEVLQELKQLLGDPVLKTKIPRRVAYREAAAEG 227 (259)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcch--------HHHHHHHHHHHhccccccccCcccccHHhHHHcC
Confidence 99888877766542 1 25678999999843222 23446666666665554 5999999999999999
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHHHHHHH
Q 022525 251 VPVVISAPDSTVSRAYGEVAVNVVNRLQEL 280 (295)
Q Consensus 251 ~~i~~~~~~s~~~~~~~~l~~~l~~~~~~~ 280 (295)
.|+..+.+.++.+++|.++++++++++...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 257 (259)
T COG1192 228 KPLYEYDPKSKAAEEYYELAKELLEELLKL 257 (259)
T ss_pred CCceecCCcchHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999987653
No 29
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.98 E-value=1.6e-31 Score=238.21 Aligned_cols=239 Identities=19% Similarity=0.135 Sum_probs=167.2
Q ss_pred cCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe-CCCCCCcccccccCCCcccc------c--------c
Q 022525 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA-DVYGPSVPMMMKIDQKPEVT------K--------D 91 (295)
Q Consensus 27 ~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~-D~~~~~~~~~~g~~~~~~~~------~--------~ 91 (295)
...++++|+|.|.||||||||+|+|||+.||+ +|+|||+||+ |+|+ +++.++|..+..... + .
T Consensus 102 ~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~-~G~rVLlID~~DpQ~-nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~ 179 (388)
T PRK13705 102 EDVFPPVIGVAAHKGGVYKTSVSVHLAQDLAL-KGLRVLLVEGNDPQG-TASMYHGWVPDLHIHAEDTLLPFYLGEKDDA 179 (388)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-cCCCeEEEcCCCCCC-chhhhcCcCccccccccccHHHHHhcCCCch
Confidence 34568999999999999999999999999999 9999999996 9998 556777765421111 0 0
Q ss_pred -CcccccccCCceeeccccccCCC-------CCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhcc
Q 022525 92 -MKMVPIENYGVKCMSMGFLVPSS-------SPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQ 163 (295)
Q Consensus 92 -~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ 163 (295)
..+.+....+++++|.+...... .............+...++.+. +.||||||||||+++ ..+.+++.+
T Consensus 180 ~~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~--~~t~nal~A 256 (388)
T PRK13705 180 TYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLG--IGTINVVCA 256 (388)
T ss_pred hhheecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchh--HHHHHHHHH
Confidence 11123334567777764211100 0000000012345677778787 899999999999998 678888999
Q ss_pred CceEEEeeCCCcchHHHHHHHHHHHhcC-------C-CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEE
Q 022525 164 LSGALIVSTPQDVALIDARKGITMFSKV-------Q-VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIG 235 (295)
Q Consensus 164 ad~viiv~~~~~~s~~~~~~~~~~l~~~-------~-~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 235 (295)
||.+|+|+.++..++.++..+++.+... + .+.+.+++|+++.+.. .......+.+.+.+|..++.
T Consensus 257 aD~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~-------~~~~~~~~~l~~~~~~~vl~ 329 (388)
T PRK13705 257 ADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNG-------SQSPWMEEQIRDAWGSMVLK 329 (388)
T ss_pred cCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCCc-------hHHHHHHHHHHHHhcccccc
Confidence 9999999999999998887776655431 1 2335689999974211 11112346677778876664
Q ss_pred -eecCCccccccccCCCceEEcCCCC--------hHHHHHHHHHHHHHHHH
Q 022525 236 -EIPIEMDIRKGSDDGVPVVISAPDS--------TVSRAYGEVAVNVVNRL 277 (295)
Q Consensus 236 -~Ip~~~~~~~a~~~g~~i~~~~~~s--------~~~~~~~~l~~~l~~~~ 277 (295)
.||++..+.++...+++++++.+.. .+.+.+..++++|++++
T Consensus 330 ~~I~~s~~i~~a~~~~~ti~e~~~~~~~~~~~~~r~~~~~~~~~~~i~~~~ 380 (388)
T PRK13705 330 NVVRETDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRL 380 (388)
T ss_pred ccCcccchHhhhhhcCCCceeEccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987633 24556667777776644
No 30
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.97 E-value=2.2e-31 Score=238.78 Aligned_cols=237 Identities=18% Similarity=0.141 Sum_probs=166.0
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccccc----------------
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD---------------- 91 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~---------------- 91 (295)
...+++|+|+|.||||||||+|+|||++||+ .|+||++||+|+|+ +++.++|..+...+.+.
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~-~G~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 178 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLAL-RGYRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPL 178 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHh-cCCCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCH
Confidence 3457999999999999999999999999999 99999999999986 77888887553221110
Q ss_pred -CcccccccCCceeeccccccCCCC--------CCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhc
Q 022525 92 -MKMVPIENYGVKCMSMGFLVPSSS--------PVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL 162 (295)
Q Consensus 92 -~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~ 162 (295)
..+.+....+++++|.+....... .....+......+...++.+. +.||||||||||+++ ..+...+.
T Consensus 179 ~~~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~--~~~~~al~ 255 (387)
T TIGR03453 179 SEIIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLG--FLTLSALC 255 (387)
T ss_pred HhhcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHh--HHHHHHHH
Confidence 011122335667776542110000 000001112245777888887 899999999999998 67788899
Q ss_pred cCceEEEeeCCCcchHHHHHHHHHH-------HhcC----CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCC
Q 022525 163 QLSGALIVSTPQDVALIDARKGITM-------FSKV----QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGL 231 (295)
Q Consensus 163 ~ad~viiv~~~~~~s~~~~~~~~~~-------l~~~----~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 231 (295)
.||.+|+|+.|+..++..+..+++. ++.. +...+++|+|+++.+.. ...+..+.+.+.+|.
T Consensus 256 aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~--------~~~~~~~~l~~~~~~ 327 (387)
T TIGR03453 256 AATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPNDG--------PQAQMVAFLRSLFGD 327 (387)
T ss_pred HcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCCc--------cHHHHHHHHHHHhcc
Confidence 9999999999999887776654433 2222 24567899999984321 123446667777787
Q ss_pred cEE-EeecCCccccccccCCCceEEcCCCChHHHHHHHHHHHHHHHH
Q 022525 232 KVI-GEIPIEMDIRKGSDDGVPVVISAPDSTVSRAYGEVAVNVVNRL 277 (295)
Q Consensus 232 ~~~-~~Ip~~~~~~~a~~~g~~i~~~~~~s~~~~~~~~l~~~l~~~~ 277 (295)
.++ ..||++..+.++...|.|++++.|.+..++.|.+..+++.+..
T Consensus 328 ~vl~~~I~~~~~~~~a~~~g~~V~e~~~~~~~~~~~~~a~~~~~~~~ 374 (387)
T TIGR03453 328 HVLTNPMLKSTAISDAGLTKQTLYEVERSQFTRSTYDRAMESLDAVN 374 (387)
T ss_pred ccccccccccHHHHhhhhcCCCcEEECCCCCCHHHHHHHHHHHHHHH
Confidence 666 4899999999999999999999987655555555555544433
No 31
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.97 E-value=1.8e-30 Score=207.26 Aligned_cols=169 Identities=63% Similarity=1.085 Sum_probs=133.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (295)
+|+|+|+|||+||||+|+|||..+|+ .|+||++||+|+|+++++.++.
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~-~g~~vllvD~D~q~~~~~~~~~------------------------------- 48 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAK-LGYKVGLLDADIYGPSIPKMWR------------------------------- 48 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHH-cCCcEEEEeCCCCCCCchHHHh-------------------------------
Confidence 58999999999999999999999999 9999999999999976543310
Q ss_pred CCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCC
Q 022525 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQ 192 (295)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~ 192 (295)
.......++.+++.+....||||||||||++++.......+..+|.+++|+.|+..++..+.+.++.+++.+
T Consensus 49 --------~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~ 120 (169)
T cd02037 49 --------GPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVN 120 (169)
T ss_pred --------CcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcC
Confidence 000123455555554337899999999999874333222225799999999999999999999999999999
Q ss_pred CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCc
Q 022525 193 VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEM 241 (295)
Q Consensus 193 ~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~ 241 (295)
.+..|+|+||+......+..+...+.....+++++.++.++++.||+++
T Consensus 121 ~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 121 IPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred CCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 9999999999986544433333333345689999999999999999975
No 32
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.97 E-value=2.9e-30 Score=226.57 Aligned_cols=217 Identities=23% Similarity=0.278 Sum_probs=169.2
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccc--ccC------------c
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT--KDM------------K 93 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~--~~~------------~ 93 (295)
...+++|+|+|.|||+||||+|+|||++|++ +|++|++||+|+|+++++.++|.+...++. +.. .
T Consensus 90 ~~~~~vIav~~~KGGvGkTT~a~nLA~~la~-~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~ 168 (322)
T TIGR03815 90 PARGVVVAVIGGRGGAGASTLAAALALAAAR-HGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRD 168 (322)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHH
Confidence 3458999999999999999999999999999 999999999999999988899987654432 110 0
Q ss_pred ccccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCC
Q 022525 94 MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTP 173 (295)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~ 173 (295)
..+. ..++.+++.+.... .......+..+++.++ +.||||||||||+.+ ......+..||.+++|+.+
T Consensus 169 ~~~~-~~~l~vl~~~~~~~--------~~~~~~~l~~~l~~l~-~~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~ 236 (322)
T TIGR03815 169 ALPR-RGGLSVLSWGRAVG--------AALPPAAVRAVLDAAR-RGGDLVVVDLPRRLT--PAAETALESADLVLVVVPA 236 (322)
T ss_pred hCCC-cCCeEEEecCCCCc--------CCCCHHHHHHHHHHHH-hcCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCC
Confidence 1122 34555555443211 1133567888888888 899999999999987 4566778899999999999
Q ss_pred CcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCce
Q 022525 174 QDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPV 253 (295)
Q Consensus 174 ~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i 253 (295)
+..++..+.++++.+...+. .+.+|+|+... .....+++.+.+|.++.+.||+++.+.++.+.|+++
T Consensus 237 ~~~sl~~a~r~l~~l~~~~~-~~~lVv~~~~~------------~~~~~~~i~~~lg~~v~~~Ip~d~~v~~a~~~G~~~ 303 (322)
T TIGR03815 237 DVRAVAAAARVCPELGRRNP-DLRLVVRGPAP------------AGLDPEEIAESLGLPLLGEVRDQRGLARALERGGLP 303 (322)
T ss_pred cHHHHHHHHHHHHHHhhhCC-CeEEEEeCCCC------------CCCCHHHHHHHhCCCceeeCCCChhHHHHHhCCCCc
Confidence 99999999999999887654 34677775431 012367888889999999999999999999999988
Q ss_pred EEcCCCChHHHHHHHHHH
Q 022525 254 VISAPDSTVSRAYGEVAV 271 (295)
Q Consensus 254 ~~~~~~s~~~~~~~~l~~ 271 (295)
. ..|.++..+.+..+..
T Consensus 304 ~-~~~~~~~~~~~~~~l~ 320 (322)
T TIGR03815 304 A-ASRRRPLGRAAAEVLD 320 (322)
T ss_pred C-CCCCCHHHHHHHHHHh
Confidence 8 6677887777766644
No 33
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.97 E-value=1.8e-30 Score=209.28 Aligned_cols=179 Identities=31% Similarity=0.471 Sum_probs=145.8
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (295)
+|+|+|.|||+||||+|+|||..|++ +|++|++||+|+|+++++.+++....... .
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~-~g~~vllvD~D~~~~~~~~~~~~~~~~~~------------~----------- 56 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQ-LGYKVVLIDADLGLRNLDLILGLENRVVY------------T----------- 56 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCCchhhccccccCCc------------c-----------
Confidence 58999999999999999999999999 99999999999998888777665431100 0
Q ss_pred CCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCC
Q 022525 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQ 192 (295)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~ 192 (295)
+... +. . |||||||||+.+. .....+..+|.+|+|+.|+..++..+.+.++.++..+
T Consensus 57 ---------------~~~~---~~-~--d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~ 113 (179)
T cd02036 57 ---------------LHDV---LA-G--DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALG 113 (179)
T ss_pred ---------------hhhc---cc-C--CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcC
Confidence 0000 11 1 9999999999874 4566778999999999999999999999999998888
Q ss_pred CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCCChHHHHH
Q 022525 193 VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDSTVSRAY 266 (295)
Q Consensus 193 ~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~s~~~~~~ 266 (295)
.+..++|+|+++.+... .....+++.+.++.++++.||+++.+.++...|++++++.|.++++++|
T Consensus 114 ~~~~~iv~N~~~~~~~~--------~~~~~~~~~~~~~~~v~~~Ip~~~~~~~a~~~G~~v~~~~~~~~~~~~~ 179 (179)
T cd02036 114 IKVVGVIVNRVRPDMVE--------GGDMVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAAQAY 179 (179)
T ss_pred CceEEEEEeCCcccccc--------hhhHHHHHHHHhCCCEEEEecCCHHHHHHHhcCCceEecCCCChhhhcC
Confidence 88899999999743211 1223567777889999999999999999999999999999999887754
No 34
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.97 E-value=1.6e-29 Score=209.05 Aligned_cols=193 Identities=24% Similarity=0.224 Sum_probs=136.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccccc------------Cccccccc
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------------MKMVPIEN 99 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~------------~~~~~~~~ 99 (295)
++|+|+| ||||||||+++|||++||+ .|+|||+||+|+|.+++..+++.+...++.+. ........
T Consensus 1 ~~iav~g-KGGvGKTt~~~nLA~~la~-~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T cd02117 1 RQIAIYG-KGGIGKSTTSQNLSAALAE-MGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGF 78 (212)
T ss_pred CEEEEEC-CCcCcHHHHHHHHHHHHHH-CCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCC
Confidence 4799995 9999999999999999999 99999999999999776666665443333221 11122334
Q ss_pred CCceeeccccccCCCCCCccCCchHH-HHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhc--cCceEEEeeCCCcc
Q 022525 100 YGVKCMSMGFLVPSSSPVVWRGPMVM-SALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL--QLSGALIVSTPQDV 176 (295)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~--~ad~viiv~~~~~~ 176 (295)
.+++++|.+...+... ....+.... ..++ .+..+. ++||||||||++.+....+ ...+. .||.+++|+.|+..
T Consensus 79 ~~l~vlp~~~~~~~~~-~~~~~~~~~~~~l~-~l~~~~-~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~ 154 (212)
T cd02117 79 GGVKCVESGGPEPGVG-CAGRGVITAVNLLE-KEGFAE-DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFM 154 (212)
T ss_pred CCcEEEeCCCCCCCcc-cCCcchhhHHHHHH-hccccc-cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHH
Confidence 6788888765433322 112221111 2233 555566 8999999999765542222 12334 79999999999999
Q ss_pred hHHHHHHHHHHHhcC----CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCC
Q 022525 177 ALIDARKGITMFSKV----QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIE 240 (295)
Q Consensus 177 s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~ 240 (295)
++.++.++++.++.. +.++.|+|+|+++.. ......+++.+.++.++++.||++
T Consensus 155 sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----------~~~~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 155 ALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----------RETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----------cHHHHHHHHHHHcCCCEEEecCCC
Confidence 999988887777654 566789999999732 123457899999999999999986
No 35
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.97 E-value=9.5e-29 Score=213.19 Aligned_cols=230 Identities=23% Similarity=0.222 Sum_probs=149.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcc-------cccccCCc-e
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKM-------VPIENYGV-K 103 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~-~ 103 (295)
++|+|+ +||||||||+|+|||+.||+ +|+||++||+|+|.+++..++|.....++.+.... ........ .
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~-~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~ 78 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAE-MGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKT 78 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeec
Confidence 589999 89999999999999999999 99999999999999888888774333333332110 00000000 0
Q ss_pred eeccccccCCCC-------C--CccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCc-cchhhhhhccCceEEEeeCC
Q 022525 104 CMSMGFLVPSSS-------P--VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD-AQLTTTQTLQLSGALIVSTP 173 (295)
Q Consensus 104 ~~~~~~~~~~~~-------~--~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~-~~~~~~~l~~ad~viiv~~~ 173 (295)
.++.+....... . +.++.......+...+..+. ++||||||||++.+.+ .......+..||.+|+|+.+
T Consensus 79 ~~~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~-~~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~ 157 (296)
T TIGR02016 79 TIMNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHD-WDFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSN 157 (296)
T ss_pred cccCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhhhc-ccCCEEEEecCCCccccccccchhhhhCCeEEEEecc
Confidence 011111000000 0 01111111122222233334 5899999999764411 11122334579999999999
Q ss_pred CcchHHHHHHHHH---HHhcC--CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcccccccc
Q 022525 174 QDVALIDARKGIT---MFSKV--QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSD 248 (295)
Q Consensus 174 ~~~s~~~~~~~~~---~l~~~--~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~ 248 (295)
+..++.++..+.+ .+++. ..+++|+|+||+.. ....+++++++++++++.||+++.+.++.
T Consensus 158 e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~-------------~~~~~~~~~~~~i~vLg~IP~d~~i~~~~- 223 (296)
T TIGR02016 158 DRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG-------------SGEAQAFAREVGIPVLAAIPADEELRRKS- 223 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC-------------ccHHHHHHHHcCCCeEEECCCCHHHHHHh-
Confidence 9999877655555 55454 36789999999852 13468889999999999999999998844
Q ss_pred CCCceEEcCCCChHHHHHHHHHHHHHHHHH
Q 022525 249 DGVPVVISAPDSTVSRAYGEVAVNVVNRLQ 278 (295)
Q Consensus 249 ~g~~i~~~~~~s~~~~~~~~l~~~l~~~~~ 278 (295)
.+.+.....+.+.+++.|.++++.+.+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~f~~la~~i~~~~~ 253 (296)
T TIGR02016 224 LAYQIVGSHATPRFGKLFEELAGNVADAPP 253 (296)
T ss_pred cCCCeeecCCCHHHHHHHHHHHHHHHHhcC
Confidence 444444444556689999999999988765
No 36
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.96 E-value=1.9e-28 Score=207.57 Aligned_cols=224 Identities=45% Similarity=0.704 Sum_probs=171.3
Q ss_pred hhhhhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCc
Q 022525 7 IFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (295)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~ 86 (295)
+.+.++.++.++.+..... ....++|+++|+|||+||||+|+|||.++|+ .|+||++||+|..+|+++.+||..+..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~--~~~~~~I~V~S~kgGvGKStva~nLA~alA~-~G~rVlliDaD~~gps~~~~l~~~~~~ 111 (265)
T COG0489 35 ASEALRALRTNLKFAKVLR--KGVKNVIAVTSGKGGVGKSTVAVNLAAALAQ-LGKRVLLLDADLRGPSIPRMLGLENLP 111 (265)
T ss_pred hhhhhhhhhcchhhhhccc--cccceEEEEEeCCCCCcHHHHHHHHHHHHHh-cCCcEEEEeCcCCCCchHHHhCCCCCC
Confidence 4455666666544443221 2347999999999999999999999999999 999999999999999999999997644
Q ss_pred ccccc---CcccccccC-CceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhc
Q 022525 87 EVTKD---MKMVPIENY-GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL 162 (295)
Q Consensus 87 ~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~ 162 (295)
+..+. ....+.... .+..++.++... ....+++...+..+.+++...+|..|||||||+||+..+....+.. .
T Consensus 112 g~~~~~~g~~~~~~~~~~~~~~lsi~~~~~--~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~-~ 188 (265)
T COG0489 112 GLTELLAGEALEPVIQHDGIKVLSILPLGP--VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQ-R 188 (265)
T ss_pred CcccccCCCccccceecCccceEEEEecCC--CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHh-c
Confidence 33332 113332222 244444444333 4555677888999999999999655999999999999875554433 3
Q ss_pred cCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcc
Q 022525 163 QLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMD 242 (295)
Q Consensus 163 ~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~ 242 (295)
..|.+|+|++|+......+.+.++.+++.+.+++|+|.||....++.+. ....+.+.++++ ++++.+|.+..
T Consensus 189 ~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~-------~g~~~~~~~~~~-~~~g~~p~~~~ 260 (265)
T COG0489 189 IPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCG-------EGGGEKYAERYG-PYLGSIPLDPS 260 (265)
T ss_pred cCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcccccC-------CCchhhHHHHhc-cccccCCCChh
Confidence 5689999999999999999999999999999999999999987666543 234667777777 88888888766
Q ss_pred cc
Q 022525 243 IR 244 (295)
Q Consensus 243 ~~ 244 (295)
..
T Consensus 261 ~~ 262 (265)
T COG0489 261 AR 262 (265)
T ss_pred hh
Confidence 54
No 37
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.96 E-value=8e-28 Score=208.19 Aligned_cols=228 Identities=22% Similarity=0.281 Sum_probs=162.1
Q ss_pred cCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCc---ccc-------
Q 022525 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK---MVP------- 96 (295)
Q Consensus 27 ~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~---~~~------- 96 (295)
..+..++|+|+ +|||+||||+++|||++||+ .|++|++||+|+++++++.+||..+...+.+... ..+
T Consensus 27 ~~~~~~ii~v~-gkgG~GKSt~a~nLa~~la~-~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~d 104 (329)
T cd02033 27 PTKKTQIIAIY-GKGGIGKSFTLANLSYMMAQ-QGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGD 104 (329)
T ss_pred CCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeec
Confidence 33457999998 59999999999999999999 9999999999999999999999776555443211 010
Q ss_pred --cccCCceeeccccccCCCCCCccCCchHH--HHHHHHHHhc---cCCCccEEEEcCCCCCCccchhhh-hhccCceEE
Q 022525 97 --IENYGVKCMSMGFLVPSSSPVVWRGPMVM--SALRKMSREV---DWGNLDILVIDMPPGTGDAQLTTT-QTLQLSGAL 168 (295)
Q Consensus 97 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~l---~~~~yD~iiiD~~~~~~~~~~~~~-~l~~ad~vi 168 (295)
....++.++..+ ....+++.... -....+++.+ . +.||||||||+++..+..+... ....+|.+|
T Consensus 105 v~~~~~gv~~~~~g------~p~~~~G~~~~~~i~~~~~l~~l~~~~-w~~DyVliD~~gdv~~ggf~l~i~~~~ad~VI 177 (329)
T cd02033 105 VCFKRDGVFAMELG------GPEVGRGCGGRGIIHGFELLEKLGFHD-WDFDYVLLDFLGDVVCGGFGLPIARDMAQKVI 177 (329)
T ss_pred eEEEeCCEEEecCC------CCeecccccchHHHHHHHHHHHccCcc-ccCCEEEEecCCcceeccccchhhhcCCceEE
Confidence 011233333211 11122222211 1111344443 5 4899999999876642222211 123578999
Q ss_pred EeeCCCcchHHH---HHHHHHHHhcCC--CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccc
Q 022525 169 IVSTPQDVALID---ARKGITMFSKVQ--VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDI 243 (295)
Q Consensus 169 iv~~~~~~s~~~---~~~~~~~l~~~~--~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~ 243 (295)
+|+.|+..++.. +.+.++.+++.+ .+++|+|+||++. ....+++++.+++++++.||+++.+
T Consensus 178 VVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~-------------~~~ie~~ae~lgi~vLg~IP~D~~V 244 (329)
T cd02033 178 VVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG-------------TGEAQAFAAHAGIPILAAIPADEEL 244 (329)
T ss_pred EeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC-------------cchHHHHHHHhCCCEEEECCCCHHH
Confidence 999999999865 455567777664 5779999999862 1347889999999999999999999
Q ss_pred cccccCCCceEEcCCCChHHHHHHHHHHHHHHHHH
Q 022525 244 RKGSDDGVPVVISAPDSTVSRAYGEVAVNVVNRLQ 278 (295)
Q Consensus 244 ~~a~~~g~~i~~~~~~s~~~~~~~~l~~~l~~~~~ 278 (295)
.++...|+++ ..|.+++++.|+++|+.|.+...
T Consensus 245 ~~a~~~g~~~--~~p~s~~a~~f~~LA~~I~~~~~ 277 (329)
T cd02033 245 RRKSAAYQIV--GRPGTTWGPLFEQLATNVAEAPP 277 (329)
T ss_pred HHHHHcCCee--cCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999853 46889999999999999987553
No 38
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.96 E-value=1.7e-28 Score=201.96 Aligned_cols=189 Identities=21% Similarity=0.288 Sum_probs=143.5
Q ss_pred chhhhhhhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccC
Q 022525 4 SFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (295)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~ 83 (295)
.+.+.++++.||+++..........+.+++|+|+|+|||+||||+++|||++||+..|+||++||+|++.++++.+++.+
T Consensus 8 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~ 87 (207)
T TIGR03018 8 RSRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLE 87 (207)
T ss_pred CCHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCC
Confidence 35577889999999875442222344589999999999999999999999999962599999999999999999999988
Q ss_pred CCccccccCc---------ccccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCc--cEEEEcCCCCCC
Q 022525 84 QKPEVTKDMK---------MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNL--DILVIDMPPGTG 152 (295)
Q Consensus 84 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~y--D~iiiD~~~~~~ 152 (295)
...++.+... .......++++++.+....... .......+..+++.++ +.| |||||||||+.+
T Consensus 88 ~~~~l~~~l~~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~-----~~~~~~~l~~~l~~l~-~~y~~D~IiiD~pp~~~ 161 (207)
T TIGR03018 88 AEPGLSDCLLDPVLDLADVLVPTNIGRLSLLPAGRRHPNPT-----ELLASQRMRSLLHELA-RRYPDRIIIIDTPPLLV 161 (207)
T ss_pred CCCCHHHHHcCCCCCHHHHhccCCCCCEEEEeCCCCCCCHH-----HHhCcHHHHHHHHHHH-hhCCCCEEEEECCCCcc
Confidence 7666544211 1122245677776654322111 1122467888888888 778 999999999986
Q ss_pred ccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEec
Q 022525 153 DAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVEN 201 (295)
Q Consensus 153 ~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN 201 (295)
. ......+..+|.+|+|+.++..+...+.+.++.++ +.+++|+|+|
T Consensus 162 ~-~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 162 F-SEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred h-hHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 3 22333345799999999999999999999999998 6789999998
No 39
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.96 E-value=3.2e-27 Score=189.08 Aligned_cols=222 Identities=22% Similarity=0.298 Sum_probs=174.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC-ccccccCc------------------
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKDMK------------------ 93 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~-~~~~~~~~------------------ 93 (295)
.|+| ++|||+||||+|+.|+..|..+.|++||+||+|+ ..+++..+|++.. ..+.+...
T Consensus 2 kIaI-~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAI-TGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred eEEE-ecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence 4666 5999999999999988888772459999999999 6799999999873 22221100
Q ss_pred -----------ccccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhc
Q 022525 94 -----------MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL 162 (295)
Q Consensus 94 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~ 162 (295)
.......+++++-.|........+.|+. ...++++++.+..+.||+||+||-+|+. .+.+-...
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~---~allR~~l~~l~~~~~e~VivDtEAGiE--HfgRg~~~ 154 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPM---NALLRRLLRHLILNRYEVVIVDTEAGIE--HFGRGTIE 154 (255)
T ss_pred ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchH---HHHHHHHHHHHhcccCcEEEEecccchh--hhcccccc
Confidence 0011233355555555555556666654 4667778888775679999999999998 78888888
Q ss_pred cCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcc
Q 022525 163 QLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMD 242 (295)
Q Consensus 163 ~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~ 242 (295)
.+|.+|+|+.|+..|+.-+.+..+..++.++..+++|+|+++. . .....+.....+.+++++||+|+.
T Consensus 155 ~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e-------~-----e~~~~~~~~~~~~~vlg~iP~d~~ 222 (255)
T COG3640 155 GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE-------E-----EELLRELAEELGLEVLGVIPYDPE 222 (255)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc-------h-----hHHHHhhhhccCCeEEEEccCCHH
Confidence 9999999999999999999999999999998888999999972 1 134677788889999999999999
Q ss_pred ccccccCCCceEEcCCCChHHHHHHHHHHHHHHH
Q 022525 243 IRKGSDDGVPVVISAPDSTVSRAYGEVAVNVVNR 276 (295)
Q Consensus 243 ~~~a~~~g~~i~~~~~~s~~~~~~~~l~~~l~~~ 276 (295)
+.++--.|.|+... | .+.++++++++.|...
T Consensus 223 v~~~dl~G~pl~~~-~--~v~~~i~~I~~~l~~~ 253 (255)
T COG3640 223 VVEADLKGEPLNEE-P--EVLKEIEEIAERLIKL 253 (255)
T ss_pred HHhccccCCccccc-h--hhhHHHHHHHHHHHhc
Confidence 99999999999976 4 7788888888888653
No 40
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.96 E-value=1.2e-27 Score=195.65 Aligned_cols=223 Identities=27% Similarity=0.386 Sum_probs=161.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccc----------ccc---------
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEV----------TKD--------- 91 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~----------~~~--------- 91 (295)
|+.|+|.|+|||+||||+|+|||..|+. .++++++|+|-..|+++.+++.+..... .+.
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~--~~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~ 78 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGD--KYKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCA 78 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhcc--ccceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHH
Confidence 4679999999999999999999999998 7899999999999999999987653111 110
Q ss_pred -----Ccc--cccccCCc----------------------eeeccc-----------cccCCCCCCccCCchHHHHHHHH
Q 022525 92 -----MKM--VPIENYGV----------------------KCMSMG-----------FLVPSSSPVVWRGPMVMSALRKM 131 (295)
Q Consensus 92 -----~~~--~~~~~~~~----------------------~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~ 131 (295)
..+ .+.+.+.+ .-...| ++... .+...+....+-+..+
T Consensus 79 ~vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g--~l~vGe~~s~~lV~~~ 156 (284)
T COG1149 79 EVCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISG--RLNVGEEESGKLVTAL 156 (284)
T ss_pred HhCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEe--eccCCccccchHHHHH
Confidence 000 00000000 000001 00000 0111111122223333
Q ss_pred HHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCC
Q 022525 132 SREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCS 211 (295)
Q Consensus 132 ~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~ 211 (295)
.+... +.-|++|||+|||.+++.+ ..+..+|.+|+|+.|+++++.++++.++..+.++++. ++|+|+++..
T Consensus 157 kk~a~-E~~~~~IIDsaaG~gCpVi--~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~-~iViNr~~~g----- 227 (284)
T COG1149 157 KKHAK-ELADLLIIDSAAGTGCPVI--ASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPT-GIVINRYNLG----- 227 (284)
T ss_pred HHhhh-hhcceeEEecCCCCCChHH--HhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCce-EEEEecCCCC-----
Confidence 33333 3369999999999998654 5677999999999999999999999999999999998 5999998532
Q ss_pred CCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCCChHHHHHHHHHHHHHH
Q 022525 212 EPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDSTVSRAYGEVAVNVVN 275 (295)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~s~~~~~~~~l~~~l~~ 275 (295)
....++++.+.|+++++.|||+..+.++...|.|+.+ ++++.+..+...+.++.+
T Consensus 228 -------~s~ie~~~~e~gi~il~~IPyd~~i~~~~~~g~~~~~--~~~k~~~~~~~~~~~~~~ 282 (284)
T COG1149 228 -------DSEIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPFVE--PDSKEAEAILEEAEKLKE 282 (284)
T ss_pred -------chHHHHHHHHcCCCeeEECCcchhHHHHHhCCCcccc--ccchHHHHHHHHHHHHHh
Confidence 1248999999999999999999999999999999998 788888888877666654
No 41
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.95 E-value=5.8e-28 Score=207.54 Aligned_cols=186 Identities=21% Similarity=0.257 Sum_probs=148.3
Q ss_pred hhhhhhhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCC
Q 022525 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (295)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~ 84 (295)
+.+.|.++.||+++.+.... ...++|+|+|+|||+||||+|+|||.++|+ .|+||++||+|++.+.++.+++.+.
T Consensus 81 ~~~~e~~~~l~~~l~~~~~~----~~~~vi~vts~~~g~Gktt~a~nLA~~la~-~g~~VllID~D~~~~~~~~~~~~~~ 155 (274)
T TIGR03029 81 SPQVEALRALRSQLMLRWFS----EGRKALAVVSAKSGEGCSYIAANLAIVFSQ-LGEKTLLIDANLRDPVQHRNFKLSE 155 (274)
T ss_pred CHHHHHHHHHHHHhhhhccC----CCCeEEEEECCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCCCCccHHHhcCCCC
Confidence 56789999999999876532 237999999999999999999999999999 9999999999999999998999887
Q ss_pred CccccccCc-------cc-ccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch
Q 022525 85 KPEVTKDMK-------MV-PIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL 156 (295)
Q Consensus 85 ~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~ 156 (295)
..++.+... .. .....++++++.|........ ......+..+++.++ ..||||||||||.... .-
T Consensus 156 ~~gl~~~l~~~~~~~~i~~~~~~~~l~~lp~g~~~~~~~~-----~~~~~~~~~~l~~l~-~~yD~ViiD~pp~~~~-~d 228 (274)
T TIGR03029 156 QRGLSDILAGRSDLEVITHIPALENLSVLPAGAIPPNPQE-----LLARPAFTDLLNKVM-GDYDVVIVDTPSAEHS-SD 228 (274)
T ss_pred CCCHHHHhCCCCCHHHeeecCCCCCEEEEeCcCCCCCHHH-----HhCcHHHHHHHHHHH-hcCCEEEEeCCCcccc-cH
Confidence 777655321 11 112357888887754332211 112356788888888 8999999999997643 22
Q ss_pred hhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEecc
Q 022525 157 TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENM 202 (295)
Q Consensus 157 ~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~ 202 (295)
.......+|.+|+|+.++..+...+...++.+++.+.+++|+|+|+
T Consensus 229 ~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 229 AQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2333457899999999999999999999999999999999999996
No 42
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.95 E-value=7.2e-28 Score=198.13 Aligned_cols=184 Identities=20% Similarity=0.263 Sum_probs=139.8
Q ss_pred hhhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCC-Ccc
Q 022525 9 TRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ-KPE 87 (295)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~-~~~ 87 (295)
|.|+.||+++.+.... +|+|+|+|.|||+||||+++|||.+||+ .|++|++||+|++.+.++.+++... ..+
T Consensus 1 ~~~~~l~~~l~~~~~~------~kvI~v~s~kgG~GKTt~a~~LA~~la~-~G~rVllID~D~~~~~l~~~~~~~~~~~~ 73 (204)
T TIGR01007 1 EYYNAIRTNIQFSGAE------IKVLLITSVKPGEGKSTTSANIAVAFAQ-AGYKTLLIDGDMRNSVMSGTFKSQNKITG 73 (204)
T ss_pred ChHHHHHHHHhhhcCC------CcEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCChhHHHHhCCCCCCCC
Confidence 4577889998876533 7999999999999999999999999999 9999999999999998888887765 444
Q ss_pred ccccCc--------ccccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhh
Q 022525 88 VTKDMK--------MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT 159 (295)
Q Consensus 88 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~ 159 (295)
+.+... .......++.+++.+....... .......+..+++.++ ..||+|||||||.... .....
T Consensus 74 l~~~l~~~~~l~~~i~~~~~~~l~~l~~g~~~~~~~-----~~l~~~~l~~~l~~l~-~~yD~ViiD~pp~~~~-~~~~~ 146 (204)
T TIGR01007 74 LTNFLSGTTDLSDAICDTNIENLFVITSGPVPPNPT-----ELLQSSNFKTLIETLR-KYFDYIIIDTPPIGTV-TDAAI 146 (204)
T ss_pred HHHHhcCCCCHHHhcccCCCCCEEEEeCCCCCCCHH-----HHhCcHHHHHHHHHHH-hcCCEEEEeCCCcccc-chHHH
Confidence 433211 1112225667776654322111 1112356788888888 8999999999984331 11122
Q ss_pred hhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 160 QTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 160 ~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
....+|.+|+|+.++..+...+.+.++.+++.+.+++|+|+|+++..
T Consensus 147 ~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 147 IARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 23368999999999999999999999999999999999999999854
No 43
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.95 E-value=2.2e-27 Score=197.42 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=137.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
|++|+|.|.||||||||+++|||..|++ +|++|++||+|+|++ +..+++........ +. ....
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~-~G~~VlliD~DpQ~s-~~~w~~~~~~~~~~------~~---~~~~------ 63 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALAS-DGKRVALFEADENRP-LTRWKENALRSNTW------DP---ACEV------ 63 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHh-CCCcEEEEeCCCCCC-HHHHHHhhccccCC------Cc---ccee------
Confidence 4899999999999999999999999999 999999999999984 44444322111100 00 0000
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhc
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSK 190 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~ 190 (295)
. .......+...++.+..+.||||||||||+.+ ......+..||.+|+|+.|+..++..+.++++.+.+
T Consensus 64 -~--------~~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~ 132 (231)
T PRK13849 64 -Y--------AADELPLLEAAYEDAELQGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIE 132 (231)
T ss_pred -c--------CCCHHHHHHHHHHHHhhCCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHH
Confidence 0 00112345555555532679999999999888 566677889999999999999999888888766543
Q ss_pred ------CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE-EeecCCccccccccCCCceEEcCCCC--h
Q 022525 191 ------VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI-GEIPIEMDIRKGSDDGVPVVISAPDS--T 261 (295)
Q Consensus 191 ------~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~Ip~~~~~~~a~~~g~~i~~~~~~s--~ 261 (295)
.+.+. .+|+|+++..... ......++..+ +.+++ ..|+....+.++...|.+.....+.. +
T Consensus 133 ~~~~~~~~l~~-~iv~~~~~~~~~~-------~~~~~~~~~~~--~~~vl~t~I~~r~~~~~a~~~G~~~~~~~~~~~~~ 202 (231)
T PRK13849 133 LLLSENLAIPT-AILRQRVPVGRLT-------TSQRAMSDMLE--SLPVVDSPMHERDAFAAMKERGMLHLTLLNLSTDP 202 (231)
T ss_pred HHHHhCCCCCe-EEEEEecccccCC-------HHHHHHHHHHh--cCCCCCccccchHHHHHHHhcCCcccchhhccccH
Confidence 24444 4999998632110 11123444444 34454 48999999999999999776544433 2
Q ss_pred HH-HHHHHHHHHHH
Q 022525 262 VS-RAYGEVAVNVV 274 (295)
Q Consensus 262 ~~-~~~~~l~~~l~ 274 (295)
.. ...+++...+.
T Consensus 203 ~~~~~~~~~~~~~~ 216 (231)
T PRK13849 203 TMRLLERNLRIAME 216 (231)
T ss_pred HHHHHHHhHHHHHH
Confidence 22 24455544443
No 44
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.95 E-value=2.3e-26 Score=185.34 Aligned_cols=178 Identities=28% Similarity=0.402 Sum_probs=125.8
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (295)
.|+|+|+|||+||||+|+|||..| ++|++||+|++.|+++.++|..+...................+.+.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l-----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 73 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL-----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLC-- 73 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH-----hCcEEEECCCCCCchhhhcCCCccccccceecCCceEEchhhhccccch--
Confidence 389999999999999999999999 4999999999999999999997654322110000000000011110000
Q ss_pred CCCCCccCCchHHHHHHHHHHhc-cCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcC
Q 022525 113 SSSPVVWRGPMVMSALRKMSREV-DWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV 191 (295)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l-~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~ 191 (295)
......+.+.+..+ ....||||||||||+.+. .....+..+|.+++|+.|+..++..+.+.++.+++.
T Consensus 74 ---------~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~ 142 (179)
T cd03110 74 ---------GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHF 142 (179)
T ss_pred ---------HHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHc
Confidence 11122333333221 127899999999999874 445667789999999999999999999999999888
Q ss_pred CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeec
Q 022525 192 QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIP 238 (295)
Q Consensus 192 ~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip 238 (295)
+.+. ++|+|+++.... ......++++.+|.++++.||
T Consensus 143 ~~~~-~vV~N~~~~~~~---------~~~~~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 143 GIPV-GVVINKYDLNDE---------IAEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred CCCE-EEEEeCCCCCcc---------hHHHHHHHHHHcCCCeEEeCC
Confidence 7765 799999874311 123467788889999999987
No 45
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.93 E-value=5.1e-25 Score=180.92 Aligned_cols=230 Identities=23% Similarity=0.252 Sum_probs=158.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccccc------------Cccccccc
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------------MKMVPIEN 99 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~------------~~~~~~~~ 99 (295)
|.|+|+ +|||+||||+++||+.+||+ .|+||+.|-|||-..++..+++-...+.+.+. ..+...+.
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~-~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~ 78 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAE-MGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGF 78 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHH-TT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEG
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHh-ccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEecc
Confidence 568887 99999999999999999999 99999999999999888777776655444332 12233445
Q ss_pred CCceeeccccccCCCCCCccCCchHHHHHHHHHHh---ccCCCccEEEEcCCCCCCccchhhhhh-ccCceEEEeeCCCc
Q 022525 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSRE---VDWGNLDILVIDMPPGTGDAQLTTTQT-LQLSGALIVSTPQD 175 (295)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---l~~~~yD~iiiD~~~~~~~~~~~~~~l-~~ad~viiv~~~~~ 175 (295)
.++.++..|- +.+..-|.+.-.... -++++. .. ..||+|+.|.-+..-+..+....- -.|+.++||++.+.
T Consensus 79 ~gi~CvEsGG---PePGvGCaGRGI~~a-~~~L~~~~~~~-~~~D~v~yDVLGDVVCGGFamPir~g~a~evyIVtSge~ 153 (273)
T PF00142_consen 79 KGILCVESGG---PEPGVGCAGRGIITA-LELLEELGAYE-DDYDFVLYDVLGDVVCGGFAMPIREGYAQEVYIVTSGEF 153 (273)
T ss_dssp GGEEEEE------SCTTSSBHHHHHHHH-HHHHHHTTTST-STSSEEEEEEESSSSCTTTTHHHHTTS-SEEEEEEBSSH
T ss_pred CCceeeccCC---Ccccccccccchhhh-hhhHHhhhhhh-cCCceEEEEEEeeeEEeeeehhhhhccCCEEEEEecCcH
Confidence 6677776652 222222222211222 222333 33 579999999876554444432221 15899999999999
Q ss_pred chHHHHHHHHHHHhcC----CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCC
Q 022525 176 VALIDARKGITMFSKV----QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGV 251 (295)
Q Consensus 176 ~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~ 251 (295)
.|+..+-+....+++. +.++-|+|.|.-+. ....+.++++.++.|.++++.||++..+.++...++
T Consensus 154 mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~----------~~e~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~~ 223 (273)
T PF00142_consen 154 MSLYAANNICKAIKNFADRGGARLGGIICNSRNV----------DDEEEIVEDFAERIGTPIIAFIPRSEIVQRAELYGK 223 (273)
T ss_dssp HHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSS----------TTHHHHHHHHHHHHTSEEEEEE---HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEecCCCC----------CCchHHHHHHHHHcCCcEEEecCchHHHHHHHHcCC
Confidence 9999888888887764 34678899996431 112356899999999999999999999999999999
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHHHHH
Q 022525 252 PVVISAPDSTVSRAYGEVAVNVVNRLQ 278 (295)
Q Consensus 252 ~i~~~~~~s~~~~~~~~l~~~l~~~~~ 278 (295)
++++..|+++.+..|++||+.|++.-.
T Consensus 224 TVie~~P~s~~a~~yr~LA~~I~~~~~ 250 (273)
T PF00142_consen 224 TVIEAAPDSEQAQEYRELARKILENPE 250 (273)
T ss_dssp -CCCC-TTSHHHHHHHHHHHHHHH---
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999997653
No 46
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.93 E-value=1.7e-25 Score=216.88 Aligned_cols=188 Identities=14% Similarity=0.088 Sum_probs=149.1
Q ss_pred hhhhhhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC
Q 022525 6 RIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85 (295)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~ 85 (295)
.+.|.++.+|+++.+.... ..+++|+|+|.|||+||||+|+|||+.||+ .|+||++||+|++.++++.+||..+.
T Consensus 525 ~~~Ea~r~lr~~l~~~~~~----~~~kvi~vts~~~G~GKTt~a~nLA~~lA~-~g~rvLlID~D~~~~~l~~~~~~~~~ 599 (754)
T TIGR01005 525 VAEEELRVKEEAVAEAKSV----AEPEVVETQRPRPVLGKSDIEANAAALIAS-GGKRALLIDADGRKAALSQILVAREV 599 (754)
T ss_pred cchHHHHHHHHHHhhhccC----CCceEEEeecCCCCCChhHHHHHHHHHHHh-CCCeEEEEeCCCCchhHHHHhCCccc
Confidence 4578899999999876543 236999999999999999999999999999 99999999999999999999998877
Q ss_pred ccccccC--------cccccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchh
Q 022525 86 PEVTKDM--------KMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT 157 (295)
Q Consensus 86 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~ 157 (295)
.++.+.. .+......++++++.+........ ......+..+++.++ +.||||||||||.......
T Consensus 600 ~gl~~~l~~~~~~~~~i~~~~~~~l~~l~~g~~~~~~~~-----ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~- 672 (754)
T TIGR01005 600 SGLLDLLAGLRSLLLDLTASGAASLPMLDSGLFPHGITE-----LLASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDM- 672 (754)
T ss_pred CChHHHHcCCccHHHHhccCCCCCeeEecCCCCCCCHHH-----HhccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHH-
Confidence 7665431 112233567888887743222211 122456778888888 8999999999998873222
Q ss_pred hhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 158 TTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 158 ~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
......+|.+++|+.++..+...+.+.++.++..+.++.|+|+|+++.
T Consensus 673 ~~l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 673 RAAARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred HHhhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 222335899999999999999999999999998888999999999974
No 47
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.93 E-value=1.1e-24 Score=187.04 Aligned_cols=242 Identities=20% Similarity=0.225 Sum_probs=191.7
Q ss_pred ccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCccc------cccc
Q 022525 26 KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMV------PIEN 99 (295)
Q Consensus 26 ~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~ 99 (295)
....++++++|.+.|||+|-||+|.|+|+.++...++.|+++|+|+++++....++.++..++.+..... ..+.
T Consensus 99 s~~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~ 178 (366)
T COG4963 99 SIAQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDS 178 (366)
T ss_pred hhhhhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHH
Confidence 3445589999999999999999999999999986799999999999999999999999888777652211 1111
Q ss_pred CCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHH
Q 022525 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI 179 (295)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~ 179 (295)
.-..+.+...+.+...............+..+++.++ ..||+||+|.|..+. .|+...+..||.+++|++++..++.
T Consensus 179 ~~~~~~~~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~~-~~~~~vV~Dlp~~~~--~~t~~vL~~Sd~iviv~e~sl~slR 255 (366)
T COG4963 179 LLTRLASGLKLLAAPTELAKNYDLKTGAVERLLDLLR-GSFDFVVVDLPNIWT--DWTRQVLSGSDEIVIVAEPSLASLR 255 (366)
T ss_pred HHhccCCCceeecCCcchhhhcccccchHHHHHHHhh-ccCCeEEEcCCCccc--hHHHHHHhcCCeEEEEecccHHHHH
Confidence 1111111112223333333334445667888888888 899999999995555 7888999999999999999999999
Q ss_pred HHHHHHHHHhcCC--CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcc-ccccccCCCceEEc
Q 022525 180 DARKGITMFSKVQ--VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMD-IRKGSDDGVPVVIS 256 (295)
Q Consensus 180 ~~~~~~~~l~~~~--~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~-~~~a~~~g~~i~~~ 256 (295)
.++++++.+++.+ .+....|+|++..+.. ....++.+.+|++.+..+|+|+. +..|.+.|+++.+.
T Consensus 256 ~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~-----------~~~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E~ 324 (366)
T COG4963 256 NAKELLDELKRLRPNDPKPILVLNRVGVPKR-----------PEPSDLEEILGIESLLVLPFDPALFGDAANNGRMLSEV 324 (366)
T ss_pred HHHHHHHHHHHhCCCCCCceEEeeecCCCCC-----------CCHHHHHHHhCCchhccccCCchhhhhhhccCcccccc
Confidence 9999999999854 4556799999984322 22789999999999999999988 66889999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Q 022525 257 APDSTVSRAYGEVAVNVVNRLQELA 281 (295)
Q Consensus 257 ~~~s~~~~~~~~l~~~l~~~~~~~~ 281 (295)
+|.+++++++..++..+...+...+
T Consensus 325 ~~~~~~~k~l~~la~~l~~~~~~~r 349 (366)
T COG4963 325 DPGSPAAKALAQLAQSLGGRISGER 349 (366)
T ss_pred CCCChHHHHHHHHHHHhcCccCccc
Confidence 9999999999999999988743333
No 48
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.92 E-value=1.8e-25 Score=182.46 Aligned_cols=188 Identities=25% Similarity=0.332 Sum_probs=124.7
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCC--CccccccCcccccccCCceeecccccc
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ--KPEVTKDMKMVPIENYGVKCMSMGFLV 111 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (295)
|+|+|.|||+||||+|++||.+|++ +|++|++||+|+|.+.++.+++... ..+....... + .......+ .
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-----~ 72 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALAR-KGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAI-L-KNFESQDI-----Y 72 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCH-H-ESCCHHHH-----H
T ss_pred CEEEcCCCCccHHHHHHHHHhcccc-ccccccccccCcccccHHHHhcchhhccccceehhhh-h-hccchhhh-----h
Confidence 7899999999999999999999999 9999999999999988777765500 0000000000 0 00000000 0
Q ss_pred CCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcC
Q 022525 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV 191 (295)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~ 191 (295)
. .... .....++.+++.+....||||||||||+++. .....+..+|.+|+|+.++..++..+..+++.+++.
T Consensus 73 ~-----~~~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~--~~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~ 144 (195)
T PF01656_consen 73 Q-----GEEY-LDPELLREILESLIKSDYDYIIIDTPPGLSD--PVRNALAAADYVIVPIEPDPSSIEGAERLIELLKRL 144 (195)
T ss_dssp H-----HCHC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSH--HHHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred h-----hhhh-hHHHHHHHHHHHhhhccccceeecccccccH--HHHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHh
Confidence 0 0000 2345678888875524599999999999985 455677799999999999999999999999999987
Q ss_pred C--CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCc-EE-EeecCCcccc
Q 022525 192 Q--VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLK-VI-GEIPIEMDIR 244 (295)
Q Consensus 192 ~--~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~-~~Ip~~~~~~ 244 (295)
+ .+.+++|+|+++.. ..... ....+.....++.+ ++ +.||++..+.
T Consensus 145 ~~~~~~~~vv~N~v~~~------~~~~~-~~~~~~~~~~~~~~~vl~~~Ip~~~~v~ 194 (195)
T PF01656_consen 145 GKKLKIIGVVINRVDPG------NESKL-QEEIEEIERELYVPVVLPGVIPYSEAVS 194 (195)
T ss_dssp THTEEEEEEEEEEETSC------CHHHH-HHHHHHHHHHCECCCBESEEEE--HHHH
T ss_pred ccccceEEEEEeeeCCC------ccchH-HHHHHHHHHHhCCCcCcCCcCCCCCCCC
Confidence 6 55789999999732 11111 11233333433333 33 6899988764
No 49
>PRK11519 tyrosine kinase; Provisional
Probab=99.92 E-value=7.8e-25 Score=210.14 Aligned_cols=188 Identities=15% Similarity=0.236 Sum_probs=153.7
Q ss_pred hhhhhhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC
Q 022525 6 RIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85 (295)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~ 85 (295)
.+.|+++.+|+++.+.... ...++|+|+|.+||+||||+++|||..||+ .|+||++||+|++.|+++.++|..+.
T Consensus 505 ~~~Ea~r~lrt~l~~~~~~----~~~kvi~vts~~~geGKTt~a~nLA~~la~-~g~rvLlID~Dlr~~~~~~~~~~~~~ 579 (719)
T PRK11519 505 LAIEAIRSLRTSLHFAMMQ----AQNNVLMMTGVSPSIGKTFVCANLAAVISQ-TNKRVLLIDCDMRKGYTHELLGTNNV 579 (719)
T ss_pred HHHHHHHHHHHHhhhhccC----CCceEEEEECCCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCCCcHHHHhCCCCC
Confidence 4678999999999986532 236999999999999999999999999999 99999999999999999999998887
Q ss_pred ccccccC--------cccccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchh
Q 022525 86 PEVTKDM--------KMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT 157 (295)
Q Consensus 86 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~ 157 (295)
.++.+.. .+.+....+++++|.|...+.+. +......+..+++.++ ..||+|||||||.+.... .
T Consensus 580 ~gl~~~l~~~~~l~~~i~~~~~~~l~~lp~g~~~~~~~-----ell~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~D-a 652 (719)
T PRK11519 580 NGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPS-----ELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTD-A 652 (719)
T ss_pred CCHHHHhCCCCCHHHhecccCcCCEEEEeCCCCCCCHH-----HHhhHHHHHHHHHHHH-hcCCEEEEeCCCcccchH-H
Confidence 7776532 12233447888888875433322 2344678999999999 899999999999765322 2
Q ss_pred hhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 158 TTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 158 ~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
......+|.+++|+..+......+...++.+++.+.+++|+|+|+++.
T Consensus 653 ~~l~~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~~ 700 (719)
T PRK11519 653 AIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFR 700 (719)
T ss_pred HHHHHHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 233457899999999999999999999999999999999999999963
No 50
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.92 E-value=7.4e-25 Score=210.50 Aligned_cols=189 Identities=14% Similarity=0.210 Sum_probs=152.1
Q ss_pred hhhhhhhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCC
Q 022525 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (295)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~ 84 (295)
+.+.|.++.||+++.+.... ...++|+|+|.+||+||||+|+|||.+||. .|+||++||+|++.|.++..|+..+
T Consensus 509 s~~~Ea~r~lrt~l~~~~~~----~~~kvI~vtS~~~g~GKTtva~nLA~~la~-~G~rVLlID~D~r~~~l~~~~~~~~ 583 (726)
T PRK09841 509 DSAVEAVRALRTSLHFAMME----TENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRGYSHNLFTVSN 583 (726)
T ss_pred CHHHHHHHHHHHHhhhhccC----CCCeEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCcHHHHcCCCC
Confidence 34678999999999886532 236999999999999999999999999999 9999999999999999998898887
Q ss_pred CccccccCc--------ccccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch
Q 022525 85 KPEVTKDMK--------MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL 156 (295)
Q Consensus 85 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~ 156 (295)
..++.+... +.+....++++++.|...+.+.. ....+.+..+++.++ ..||+|||||||.+.....
T Consensus 584 ~~gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g~~~~~p~e-----ll~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da 657 (726)
T PRK09841 584 EHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSE-----LLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDA 657 (726)
T ss_pred CCCHHHHhCCCCCHHHheeccCCCCEEEEeCCCCCCCHHH-----HhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchH
Confidence 777665421 22233457888888764433222 223568889999998 8999999999998764222
Q ss_pred hhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 157 TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 157 ~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
. .....+|.+++|+.++..+...+...++.+++.+.++.|+|+|+++.
T Consensus 658 ~-~la~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 658 A-VVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred H-HHHHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCccc
Confidence 2 22347899999999999999999999999999999999999999974
No 51
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.3e-24 Score=170.16 Aligned_cols=230 Identities=26% Similarity=0.306 Sum_probs=170.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccccc------------Ccccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------------MKMVPIE 98 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~------------~~~~~~~ 98 (295)
++.|+|+ +|||.||||++.|++.+||+ .|+||++|-|||-..++..++|-...+.+-+. ..+...+
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~-~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~G 78 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAE-LGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTG 78 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHH-cCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheecc
Confidence 4789997 99999999999999999999 99999999999999998888884443333221 2344455
Q ss_pred cCCceeeccccccCCCCCCccCCchHHHHHHHHHHhcc-C-CCccEEEEcCCCCCCccchhhhhhc--cCceEEEeeCCC
Q 022525 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD-W-GNLDILVIDMPPGTGDAQLTTTQTL--QLSGALIVSTPQ 174 (295)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~-~~yD~iiiD~~~~~~~~~~~~~~l~--~ad~viiv~~~~ 174 (295)
..++.++..| .+.+..-|.+.-....+ ++++.+. . +..|+||.|..+..-+..++.. +. .||.+.||++..
T Consensus 79 f~Gv~CVEsG---GPepGvGCAGRGVitai-~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmP-iReg~AdeiyIVtSge 153 (278)
T COG1348 79 FGGVKCVESG---GPEPGVGCAGRGVITAI-NLLEELGAFEEDLDVVIYDVLGDVVCGGFAMP-IREGYADEIYIVTSGE 153 (278)
T ss_pred CCceEEeecC---CCCCCCCcccchHHHHH-HHHHHhCCccccCCEEEEeccCceeecceeee-hhcccCcEEEEEecCc
Confidence 6677777665 22333333333222222 2233332 1 4469999999876655444322 22 589999999999
Q ss_pred cchHHHHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCC
Q 022525 175 DVALIDARKGITMFSK----VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDG 250 (295)
Q Consensus 175 ~~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g 250 (295)
..++..+-+..+-+.+ .+...-|+|.|.-.. ....+.+.++.++.|.++++.||++..+..+...|
T Consensus 154 ~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~----------~~e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~~ 223 (278)
T COG1348 154 MMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSV----------DRERELVEAFAERLGTQLIHFVPRDNIVQKAELNG 223 (278)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCc----------ccHHHHHHHHHHHhCCceEeeccchHHHHHHHHcC
Confidence 9988888777766654 345677888886431 12246689999999999999999999999999999
Q ss_pred CceEEcCCCChHHHHHHHHHHHHHHHH
Q 022525 251 VPVVISAPDSTVSRAYGEVAVNVVNRL 277 (295)
Q Consensus 251 ~~i~~~~~~s~~~~~~~~l~~~l~~~~ 277 (295)
+++++++|+|..+..|++||+.|++.-
T Consensus 224 kTvie~~P~s~~a~~yr~LA~~I~~n~ 250 (278)
T COG1348 224 KTVIEYAPDSNQAEEYRELAKKILENE 250 (278)
T ss_pred cchhhhCcchhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998744
No 52
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.89 E-value=2.5e-22 Score=147.17 Aligned_cols=102 Identities=29% Similarity=0.359 Sum_probs=91.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccccc
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (295)
+|++.|.|||+||||++.|||..+++ . |++|+++|+|+|.++
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~-~~~~~~~l~d~d~~~~~------------------------------------ 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAK-EAGRRVLLVDLDLQFGD------------------------------------ 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHh-cCCCcEEEEECCCCCCC------------------------------------
Confidence 58999999999999999999999999 7 999999999999743
Q ss_pred CCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcC
Q 022525 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV 191 (295)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~ 191 (295)
|+|||||||+++ .+....+..||.+++|+.++..++..+.++++.+++.
T Consensus 44 -----------------------------D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~ 92 (106)
T cd03111 44 -----------------------------DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVL 92 (106)
T ss_pred -----------------------------CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHc
Confidence 899999999998 4556778899999999999999999999999999887
Q ss_pred CCC---eeeEEecc
Q 022525 192 QVP---ILGLVENM 202 (295)
Q Consensus 192 ~~~---~~~~ViN~ 202 (295)
+.+ .+.+|+|+
T Consensus 93 ~~~~~~~~~lVvNr 106 (106)
T cd03111 93 DYSLPAKIELVLNR 106 (106)
T ss_pred CCCCcCceEEEecC
Confidence 643 67789885
No 53
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.89 E-value=2.7e-22 Score=162.83 Aligned_cols=181 Identities=22% Similarity=0.265 Sum_probs=122.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCc-cccccCcccccccCCceeecccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP-EVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
|++|+|+|.|||+||||.+..||..|++ +|.+|.+||+||+.|... |-...... .+.+.. .+.
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~-~G~~V~lIDaDpn~pl~~-W~~~a~~~~~~~~~~----------~V~---- 64 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAA-RGARVALIDADPNQPLAK-WAENAQRPGAWPDRI----------EVY---- 64 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCcHHH-HHHhccccCCCCCCe----------eEE----
Confidence 5899999999999999999999999999 999999999999996643 32221111 111111 110
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHh
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFS 189 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~ 189 (295)
.......+...++......|||||||+.++-+ .+....+..+|.||||+.++......+.+.++++.
T Consensus 65 -----------~~~e~~~l~~~~e~a~~~~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~ 131 (231)
T PF07015_consen 65 -----------EADELTILEDAYEAAEASGFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVR 131 (231)
T ss_pred -----------eccchhhHHHHHHHHHhcCCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 00112355666665543569999999998777 55666777899999999999999999998888887
Q ss_pred cC------CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEE-eecCCccccccccCC
Q 022525 190 KV------QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIG-EIPIEMDIRKGSDDG 250 (295)
Q Consensus 190 ~~------~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~Ip~~~~~~~a~~~g 250 (295)
+. .+|. .+++|+++..... -......++.+ ++|++- .+.....+.+.-..|
T Consensus 132 ~~~~~~~~~ip~-~Vl~Tr~~~~~~~-------~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~~G 189 (231)
T PF07015_consen 132 RLEKAERRDIPA-AVLFTRVPAARLT-------RAQRIISEQLE--SLPVLDTELHERDAFRAMFSRG 189 (231)
T ss_pred HHHHhhCCCCCe-eEEEecCCcchhh-------HHHHHHHHHHh--cCCccccccccHHHHHHHHHhc
Confidence 53 3344 6999998732111 01122344444 356653 444555565555556
No 54
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.88 E-value=6.9e-22 Score=152.28 Aligned_cols=107 Identities=36% Similarity=0.458 Sum_probs=93.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (295)
+|+|+|.|||+||||++.++|..+++ +|.+|+++|+|+|++++.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~~~~~~----------------------------------- 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGLANLD----------------------------------- 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCCC-----------------------------------
Confidence 58999999999999999999999999 999999999999875431
Q ss_pred CCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcC-
Q 022525 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV- 191 (295)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~- 191 (295)
||+||||+||+.+. .....+..+|.+++|+.++..++..+.+.++.+.+.
T Consensus 45 ---------------------------yd~VIiD~p~~~~~--~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~ 95 (139)
T cd02038 45 ---------------------------YDYIIIDTGAGISD--NVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQL 95 (139)
T ss_pred ---------------------------CCEEEEECCCCCCH--HHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhc
Confidence 99999999999884 445677899999999999999999999999888653
Q ss_pred CCCeeeEEecccc
Q 022525 192 QVPILGLVENMSC 204 (295)
Q Consensus 192 ~~~~~~~ViN~~~ 204 (295)
+...+++|+|++.
T Consensus 96 ~~~~~~lVvN~~~ 108 (139)
T cd02038 96 RVLNFRVVVNRAE 108 (139)
T ss_pred CCCCEEEEEeCCC
Confidence 3456789999986
No 55
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.85 E-value=2.7e-21 Score=163.73 Aligned_cols=205 Identities=19% Similarity=0.201 Sum_probs=119.5
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccC------CCccccccCcc--cc------ccc
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID------QKPEVTKDMKM--VP------IEN 99 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~------~~~~~~~~~~~--~~------~~~ 99 (295)
|.++++|||+||||+++++|..+|+ .|+||++||+|++ ++++..||.+ +..+..+.... .+ ...
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~-~g~~vLlvd~D~~-~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~ 79 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAE-QGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQ 79 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHH-CCCCceEEeCCCc-ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHH
Confidence 5667899999999999999999999 9999999999998 5889888876 22222221100 00 000
Q ss_pred CCceeeccccccCC-----CCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc-chhh--------hhhc--c
Q 022525 100 YGVKCMSMGFLVPS-----SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA-QLTT--------TQTL--Q 163 (295)
Q Consensus 100 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~-~~~~--------~~l~--~ 163 (295)
.....+..+..... ......++....-.+..+.+.+++.+||+|||||||.-... .+.. ..+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~ 159 (254)
T cd00550 80 EVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPE 159 (254)
T ss_pred HHHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCc
Confidence 00111111100000 00000011111222333333333368999999999942210 0110 0111 2
Q ss_pred CceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCC-CCC--CccccCCchhhHHHHHhCCcEEEeecCC
Q 022525 164 LSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPH-CSE--PSFIFGKGGTHRTAAEMGLKVIGEIPIE 240 (295)
Q Consensus 164 ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~g~~~~~~Ip~~ 240 (295)
.+.+++|+.|+..++.++.+.++.++..+.++.|+|+|++...... +.- .....+...++++.+.++...+..||+-
T Consensus 160 ~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~ 239 (254)
T cd00550 160 RTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLL 239 (254)
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecC
Confidence 3579999999999999999999999999999999999999854331 000 0001112335566666554444466643
No 56
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.85 E-value=1.9e-20 Score=137.11 Aligned_cols=99 Identities=41% Similarity=0.520 Sum_probs=86.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (295)
+|+|.|.|||+||||++.+||+.+++ .|.+|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~d~~---------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDLDPQ---------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeCCCC----------------------------------------
Confidence 58999999999999999999999999 9999999999988
Q ss_pred CCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHH---HHh
Q 022525 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGIT---MFS 189 (295)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~---~l~ 189 (295)
||+||||+||+.+. .....+..+|.+++|+.++..++..+.++++ ..+
T Consensus 40 ---------------------------~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~~~~~~~ 90 (104)
T cd02042 40 ---------------------------YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPSPLDLDGLEKLLETLILED 90 (104)
T ss_pred ---------------------------CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999874 4557788999999999999999999999887 332
Q ss_pred c--CCCCeeeEEec
Q 022525 190 K--VQVPILGLVEN 201 (295)
Q Consensus 190 ~--~~~~~~~~ViN 201 (295)
. ......++|+|
T Consensus 91 ~~~~~~~~~~vv~n 104 (104)
T cd02042 91 RLNPDLDILGILPT 104 (104)
T ss_pred hcCCCCceEEEEeC
Confidence 2 34556778876
No 57
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.82 E-value=5.2e-21 Score=155.82 Aligned_cols=134 Identities=34% Similarity=0.429 Sum_probs=81.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccccc
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (295)
.+|+|.|+||||||||+|+|||.+|+. .|++|.++|+|..++++..+++......-.+ ....|.. ....++
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~-~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~-gi~Lp~p--~~~~L~----- 71 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALAR-MGKKVGLLDLDIRQPSLPRYLENRAAWAQRD-GIELPVP--SHFFLP----- 71 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHC-TT--EEEEE--TTT-HHHHHHHHHHHHHHHH-T--------EEE-SS-----
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCCCCCCHHHHHhccchhHHhc-CcccCCc--cceeec-----
Confidence 489999999999999999999999999 9999999999999999998886432110000 0001100 000011
Q ss_pred CCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch
Q 022525 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA 177 (295)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s 177 (295)
.........+......+.+++..+. ..+||||||||++ ++ .....+...||.+|.|...+...
T Consensus 72 ~~~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~PGt-d~-~lsr~Ahs~ADtLiTPlNdSfvD 134 (261)
T PF09140_consen 72 PDQASVWEGENVEDKRLEQALADLE-GDLDFLVIDTPGT-DD-RLSRVAHSMADTLITPLNDSFVD 134 (261)
T ss_dssp SHHHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE-SS-S--HHHHHHHHT-SEEEEEEESSHHH
T ss_pred ccccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCCCC-Cc-HHHHHHHHhCCEEEccCchhHHh
Confidence 1001111122233468888888888 8999999999954 43 56667777899988887665543
No 58
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.82 E-value=2.3e-20 Score=154.67 Aligned_cols=162 Identities=22% Similarity=0.264 Sum_probs=105.8
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCC-------CcccccccCCCc-ccccc-Ccccccc------
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP-------SVPMMMKIDQKP-EVTKD-MKMVPIE------ 98 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~-------~~~~~~g~~~~~-~~~~~-~~~~~~~------ 98 (295)
|.++++|||+||||+++++|..+|+ .|++|++||+|++.+ ++..+++..+.. ..... .......
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~-~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAE-EGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAW 79 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHH-CCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhcc
Confidence 3577899999999999999999999 999999999999983 333333321100 00000 0000000
Q ss_pred -cCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCC-ccEEEEcCCCCCCcc-chhhhhhcc--CceEEEeeCC
Q 022525 99 -NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGN-LDILVIDMPPGTGDA-QLTTTQTLQ--LSGALIVSTP 173 (295)
Q Consensus 99 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-yD~iiiD~~~~~~~~-~~~~~~l~~--ad~viiv~~~ 173 (295)
..+...++.+...+.. ...-.+.++++.++ .. ||+|||||||+.... .+....+.. +|.+++|+.+
T Consensus 80 ~~~~~~~~~~~~~~p~~--------~ell~~~~l~~~l~-~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p 150 (217)
T cd02035 80 GGEGGLMLELAAALPGI--------EELASLLAVFREFS-EGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLP 150 (217)
T ss_pred cchhhhHHhHhccCCCH--------HHHHHHHHHHHHHh-cCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCC
Confidence 0011112221111111 11122677777777 55 999999999974321 122222322 4799999999
Q ss_pred CcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 174 QDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 174 ~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+..+...+.+.++.++..+.+..++|+|++..
T Consensus 151 ~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~ 182 (217)
T cd02035 151 EKLPLYETERAITELALYGIPVDAVVVNRVLP 182 (217)
T ss_pred CccHHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 99999999999999999999999999999874
No 59
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.80 E-value=2.6e-20 Score=146.74 Aligned_cols=145 Identities=25% Similarity=0.294 Sum_probs=100.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccC---------Cc
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENY---------GV 102 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---------~~ 102 (295)
|+|+|+|++||+||||+|.|||..||+ .|++|++||+|...+.+..+++..+..++.+.......... .+
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~-~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 79 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALAR-KGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHI 79 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHH-TTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHh-cCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHh
Confidence 789999999999999999999999999 99999999999999999999998887566554222100000 00
Q ss_pred e--eeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHH
Q 022525 103 K--CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI 179 (295)
Q Consensus 103 ~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~ 179 (295)
. -.....+.++............+.+..+++.++ ..||+||||+|+.... ......+..+|.+++|+.++..+.+
T Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l~-~~yd~IivD~~~~~~~-~~~~~~l~~~D~ii~v~~~~~~s~~ 156 (157)
T PF13614_consen 80 YSDAHDGLDLLPPPSSPEDLEELTPEDVEELIDALK-EHYDYIIVDLPSSLSN-PDTQAVLELADKIILVVRPDVTSIR 156 (157)
T ss_dssp EEESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHHH-HHSSEEEEEEESTTTH-THHHHHHTTHSEEEEEEETTHHHHH
T ss_pred eeccCCCeEEecCCCCCCchhhcCHHHHHHHHHHHH-HcCCEEEEECcCCccH-HHHHHHHHHCCEEEEEECCCccccc
Confidence 0 001111223333222222334578899999999 8999999999998885 3333467789999999999987754
No 60
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.67 E-value=2.3e-16 Score=136.54 Aligned_cols=198 Identities=20% Similarity=0.190 Sum_probs=113.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccc-----
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG----- 108 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 108 (295)
+.|+++||||||||+|+.+|..+|+ +|++||++..||.. ++...||.+-........ +..++..+..+
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~-~G~rtLlvS~Dpa~-~L~d~l~~~~~~~~~~v~-----~~~~L~a~eid~~~~~ 75 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALAR-RGKRTLLVSTDPAH-SLSDVLGQKLGGEPTKVE-----GVPNLSAMEIDPEAEL 75 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-TTS-EEEEESSTTT-HHHHHHTS--BSS-EEET-----TCSSEEEEE--HHHHH
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhh-CCCCeeEeecCCCc-cHHHHhCCcCCCCCeEec-----CCCCceeeecCHHHHH
Confidence 3455799999999999999999999 99999999999986 677777764221111111 00111111000
Q ss_pred ---------------------cccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc----------ch-
Q 022525 109 ---------------------FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA----------QL- 156 (295)
Q Consensus 109 ---------------------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~----------~~- 156 (295)
.... ......++......+..+.+.+....||+||+||||.-..- .+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l 154 (305)
T PF02374_consen 76 EEYWEEVQKDLSSLLPLIGLERILD-EELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERLRWWL 154 (305)
T ss_dssp HHHHHHHHHGCSTCHHCHHHHHHHH-HHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhhhhhHHHHH-HHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHHHHHH
Confidence 0000 00000022222333444444443489999999999853311 00
Q ss_pred h---------------h----------------------------hhhc--cCceEEEeeCCCcchHHHHHHHHHHHhcC
Q 022525 157 T---------------T----------------------------TQTL--QLSGALIVSTPQDVALIDARKGITMFSKV 191 (295)
Q Consensus 157 ~---------------~----------------------------~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~ 191 (295)
. . ..+. ....+++|+.|+..++.++.+.+..+...
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L~~~ 234 (305)
T PF02374_consen 155 DRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTELKLY 234 (305)
T ss_dssp HHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHHHhc
Confidence 0 0 0111 12358999999999999999999999999
Q ss_pred CCCeeeEEeccccCCCCCC-CC--CccccCCchhhHHHHHhCCcEEEeecC
Q 022525 192 QVPILGLVENMSCFICPHC-SE--PSFIFGKGGTHRTAAEMGLKVIGEIPI 239 (295)
Q Consensus 192 ~~~~~~~ViN~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~g~~~~~~Ip~ 239 (295)
++++-++|+|++-+..... .. .....+...++++.+.+.-..+..+|+
T Consensus 235 gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~~f~~~~v~~vp~ 285 (305)
T PF02374_consen 235 GIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEESFPDLPVVKVPL 285 (305)
T ss_dssp T-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE-
T ss_pred CCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 9999999999986432210 00 000011233666777665444446663
No 61
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.59 E-value=2e-14 Score=124.13 Aligned_cols=166 Identities=22% Similarity=0.252 Sum_probs=104.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccc---
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG--- 108 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 108 (295)
..|.++++||||||||+|+.+|..+|+ .|++|++|..||.+ ++...|+.+-........ .|++.+..+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~-~g~kvLlvStDPAh-sL~d~f~~elg~~~~~I~-------~nL~a~eiD~~~ 72 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE-SGKKVLLVSTDPAH-SLGDVFDLELGHDPRKVG-------PNLDALELDPEK 72 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH-cCCcEEEEEeCCCC-chHhhhccccCCchhhcC-------CCCceeeecHHH
Confidence 345666899999999999999999999 99999999999987 777777662111110000 111111100
Q ss_pred ---------------cccC-------CCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc----------ch
Q 022525 109 ---------------FLVP-------SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA----------QL 156 (295)
Q Consensus 109 ---------------~~~~-------~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~----------~~ 156 (295)
.+.. .......++......+..+.+.+...+||+||+||+|.-..- .+
T Consensus 73 ~l~ey~~~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~~~~ 152 (322)
T COG0003 73 ALEEYWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWY 152 (322)
T ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHHHHH
Confidence 0000 011111233333445666666665588999999999843211 00
Q ss_pred -h------hhh--------------------------------------hcc--CceEEEeeCCCcchHHHHHHHHHHHh
Q 022525 157 -T------TTQ--------------------------------------TLQ--LSGALIVSTPQDVALIDARKGITMFS 189 (295)
Q Consensus 157 -~------~~~--------------------------------------l~~--ad~viiv~~~~~~s~~~~~~~~~~l~ 189 (295)
. ... +.. -..+.+|..|...++.++.+..+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~ 232 (322)
T COG0003 153 LEKLFKPRRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLS 232 (322)
T ss_pred HHhhhhhHHHHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHHHH
Confidence 0 000 000 12357778888888888888888888
Q ss_pred cCCCCeeeEEeccccCC
Q 022525 190 KVQVPILGLVENMSCFI 206 (295)
Q Consensus 190 ~~~~~~~~~ViN~~~~~ 206 (295)
..+.+.-++++|++-+.
T Consensus 233 ~~~i~v~~vi~n~~~p~ 249 (322)
T COG0003 233 LYGIPVDAVIVNKILPD 249 (322)
T ss_pred HcCCchheeeeeccccc
Confidence 88999888999987643
No 62
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.57 E-value=1e-13 Score=107.60 Aligned_cols=146 Identities=18% Similarity=0.234 Sum_probs=82.8
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCc-ccccccCCCccccccCcccccccCCceeeccccccC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV-PMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (295)
|.+ .++||+||||++.+++..+++ .|.+|+++|+|++.+.. ..+++ ....+.+... + ....+..++.+
T Consensus 2 i~~-~G~~GsGKTt~~~~l~~~~~~-~g~~v~ii~~D~~~~~~~~~~~~--~~~~~~~~~~--~-~~~~~~~~~~~---- 70 (148)
T cd03114 2 IGI-TGVPGAGKSTLIDALITALRA-RGKRVAVLAIDPSSPFSGGAILG--DRIRMERHAS--D-PGVFIRSLATR---- 70 (148)
T ss_pred EEE-ECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeCCCCCCcccchhc--CceEhhheec--C-CCceEEEcCCc----
Confidence 344 489999999999999999999 99999999999876432 11222 1111111100 0 01111112211
Q ss_pred CCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCC
Q 022525 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQ 192 (295)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~ 192 (295)
..... ......+.++.++...||+||||| +|..... ...+..||.+++|+.|+...-..+.+. ..++..
T Consensus 71 --~~~~~----~~~~~~~~~~~~~~~~~D~iiIDt-aG~~~~~--~~~~~~Ad~~ivv~tpe~~D~y~~~k~-~~~~~~- 139 (148)
T cd03114 71 --GFLGG----LSRATPEVIRVLDAAGFDVIIVET-VGVGQSE--VDIASMADTTVVVMAPGAGDDIQAIKA-GIMEIA- 139 (148)
T ss_pred --Ccccc----cchhHHHHHHHHHhcCCCEEEEEC-CccChhh--hhHHHhCCEEEEEECCCchhHHHHhhh-hHhhhc-
Confidence 00000 012233333444325799999999 6776433 356778999999999994433333322 222222
Q ss_pred CCeeeEEecccc
Q 022525 193 VPILGLVENMSC 204 (295)
Q Consensus 193 ~~~~~~ViN~~~ 204 (295)
. .+++|+++
T Consensus 140 -~--~~~~~k~~ 148 (148)
T cd03114 140 -D--IVVVNKAD 148 (148)
T ss_pred -C--EEEEeCCC
Confidence 2 37888864
No 63
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.54 E-value=4.2e-13 Score=114.44 Aligned_cols=165 Identities=18% Similarity=0.160 Sum_probs=96.5
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc-cccccCCCccccccCcccccccCCceeeccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (295)
.+++|+|+ +++|+||||++++||..+++ .|++|++||+|++..... .+.. +. ...++.+++..
T Consensus 71 ~~~vi~l~-G~~G~GKTTt~akLA~~l~~-~g~~V~li~~D~~r~~a~~ql~~------~~--------~~~~i~~~~~~ 134 (272)
T TIGR00064 71 KPNVILFV-GVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTFRAAAIEQLEE------WA--------KRLGVDVIKQK 134 (272)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHh-cCCEEEEEeCCCCCHHHHHHHHH------HH--------HhCCeEEEeCC
Confidence 36899998 79999999999999999999 999999999998543210 0000 00 00112221111
Q ss_pred cccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhh------hhc------cCceEEEeeCCCcc
Q 022525 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT------QTL------QLSGALIVSTPQDV 176 (295)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~------~l~------~ad~viiv~~~~~~ 176 (295)
. .. + ........+..+...+||+|||||||........+. .+. ..|.+++|+... .
T Consensus 135 ~----~~-----d--p~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-~ 202 (272)
T TIGR00064 135 E----GA-----D--PAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-T 202 (272)
T ss_pred C----CC-----C--HHHHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-C
Confidence 0 00 0 012222222222227899999999987653222111 111 278889998886 3
Q ss_pred hHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 177 ALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 177 s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
.-..+.....+.+.. ++.++|+|+++..... ...-.+...++.|+.
T Consensus 203 ~~~~~~~~~~f~~~~--~~~g~IlTKlDe~~~~----------G~~l~~~~~~~~Pi~ 248 (272)
T TIGR00064 203 GQNALEQAKVFNEAV--GLTGIILTKLDGTAKG----------GIILSIAYELKLPIK 248 (272)
T ss_pred CHHHHHHHHHHHhhC--CCCEEEEEccCCCCCc----------cHHHHHHHHHCcCEE
Confidence 444554444444333 4578999999843221 345566666676665
No 64
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.52 E-value=6.1e-14 Score=103.99 Aligned_cols=112 Identities=25% Similarity=0.269 Sum_probs=74.9
Q ss_pred eeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccCCCCC
Q 022525 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSP 116 (295)
Q Consensus 37 ~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (295)
.++|||+||||++.++|..+++ +|++|++||+|+ +++...++...... ..++-.+........
T Consensus 4 ~~GkgG~GKTt~a~~la~~l~~-~g~~V~~id~D~--~~~~~~~~~~~~~~--------------~~~i~~g~~~~~~~g 66 (116)
T cd02034 4 ITGKGGVGKTTIAALLARYLAE-KGKPVLAIDADP--DDLPERLSVEVGEI--------------KLLLVMGMGRPGGEG 66 (116)
T ss_pred EECCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCc--hhhHHHHhhccCCc--------------eEEEEecccccCCCC
Confidence 4589999999999999999999 999999999999 34333333322100 000112211122222
Q ss_pred CccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEe
Q 022525 117 VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIV 170 (295)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv 170 (295)
..+.. ...+++++..+....||++|+||++|+. .+....+..+|.+++|
T Consensus 67 ~~~~~---n~~~~~~l~~~~~~~~~~vivDt~ag~e--~~~~~~~~~~d~vv~v 115 (116)
T cd02034 67 CYCPE---NALLNALLRHLVLTRDEQVVVDTEAGLE--HLGRGTAEGVDLLVVV 115 (116)
T ss_pred CEehh---hHHHHHHHHHeEccCCCEEEEecHHHHH--HHHhhccccCCEEEEe
Confidence 22222 1267777777522899999999999998 6666666688998887
No 65
>PRK10867 signal recognition particle protein; Provisional
Probab=99.50 E-value=6.7e-13 Score=119.36 Aligned_cols=165 Identities=22% Similarity=0.207 Sum_probs=99.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
+.+|.++ +..|+||||++++||..|++ . |++|++||+|++.+....-+..- ....++++++..
T Consensus 100 p~vI~~v-G~~GsGKTTtaakLA~~l~~-~~G~kV~lV~~D~~R~aa~eQL~~~-------------a~~~gv~v~~~~- 163 (433)
T PRK10867 100 PTVIMMV-GLQGAGKTTTAGKLAKYLKK-KKKKKVLLVAADVYRPAAIEQLKTL-------------GEQIGVPVFPSG- 163 (433)
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHH-hcCCcEEEEEccccchHHHHHHHHH-------------HhhcCCeEEecC-
Confidence 4555554 79999999999999999999 7 99999999999876532112100 011222222211
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchh------hhhhccCceEEEeeCCCcchHHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT------TTQTLQLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~------~~~l~~ad~viiv~~~~~~s~~~~~~ 183 (295)
.. ..........++..+...||+|||||++........ +......+.+++|+.+.. -+++..
T Consensus 164 -----~~-----~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~--gq~av~ 231 (433)
T PRK10867 164 -----DG-----QDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT--GQDAVN 231 (433)
T ss_pred -----CC-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc--HHHHHH
Confidence 00 011223334444443368999999999876421111 112224577788877643 345555
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
..+.+.+ .+++.|+|+|+.+.... ...+..+...++.|+.
T Consensus 232 ~a~~F~~-~~~i~giIlTKlD~~~r----------gG~alsi~~~~~~PI~ 271 (433)
T PRK10867 232 TAKAFNE-ALGLTGVILTKLDGDAR----------GGAALSIRAVTGKPIK 271 (433)
T ss_pred HHHHHHh-hCCCCEEEEeCccCccc----------ccHHHHHHHHHCcCEE
Confidence 5555543 45677999999984321 1336677777787765
No 66
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.49 E-value=1.9e-13 Score=113.91 Aligned_cols=191 Identities=12% Similarity=0.042 Sum_probs=113.5
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccc-cccCc-ccccccCCceeecccccc
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEV-TKDMK-MVPIENYGVKCMSMGFLV 111 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 111 (295)
|.|++.-.|+|||+++++|+..|++ +|.+|.++- |.+....... .+....+ ..... ..+......... .....
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~-~g~~v~~~K--Pv~~g~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~s 76 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALRE-AGYSVAGYK--PVQSGCEETD-RNGDALALQRLSGLPLDYEDVNPYRF-EEPLS 76 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHH-cCCceEEEe--eEecCCCCCC-CcHHHHHHHHHcCCCCChhhcCceee-CCCCC
Confidence 6788999999999999999999999 999998863 2221100000 0000000 00000 000000000000 00000
Q ss_pred CCCC-CCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCce-------EEEeeCCCcchHHHHHH
Q 022525 112 PSSS-PVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSG-------ALIVSTPQDVALIDARK 183 (295)
Q Consensus 112 ~~~~-~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~-------viiv~~~~~~s~~~~~~ 183 (295)
+... ..... ......+.+.++.++ ++||+||||+++++..... ..+..+|. +++|+.++..++..+..
T Consensus 77 p~~a~~~~~~-~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~--~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~ 152 (222)
T PRK00090 77 PHLAAALEGV-AIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLT--EDLTLADLAKQLQLPVILVVGVKLGCINHTLL 152 (222)
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCC--CCCcHHHHHHHhCCCEEEEECCCCcHHHHHHH
Confidence 0000 00001 122456677777777 8999999999988653221 11223343 78888888888888889
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCC
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIE 240 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~ 240 (295)
.++.++..+.++.|+|+|+++... ........+.+.+.++.++++.||+-
T Consensus 153 ~i~~l~~~~~~i~gvIlN~~~~~~-------~~~~~~~~~~l~~~~gi~vlg~ip~~ 202 (222)
T PRK00090 153 TLEAIRARGLPLAGWVANGIPPEP-------GLRHAENLATLERLLPAPLLGELPYL 202 (222)
T ss_pred HHHHHHHCCCCeEEEEEccCCCcc-------hhHHHHHHHHHHHHcCCCeEEecCCC
Confidence 898888888999999999987420 11122446777888899999999984
No 67
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.48 E-value=1.1e-12 Score=108.71 Aligned_cols=49 Identities=33% Similarity=0.308 Sum_probs=44.6
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMM 79 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~ 79 (295)
|++++.+.++||||||||+|++||.++++ +|++|++||+|++++.+..+
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~-~g~~vl~iD~D~~n~~~~~~ 49 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKAS-KGQKPLCIDTDPVNATFEGY 49 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHh-CCCCEEEEECCCCCchhhhH
Confidence 46899999999999999999999999999 99999999999998765433
No 68
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.47 E-value=3.6e-12 Score=114.63 Aligned_cols=166 Identities=19% Similarity=0.202 Sum_probs=99.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la-~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.+.|.++++..|+||||++++||..++ + .|++|++||+|.+.+....-+.... ...++++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~-~g~kV~lV~~D~~R~~a~~QL~~~a-------------~~~gvp~~~~~- 162 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKK-QGKKVLLVACDLYRPAAIEQLKVLG-------------QQVGVPVFALG- 162 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh-CCCeEEEEeccccchHHHHHHHHHH-------------HhcCCceEecC-
Confidence 356666679999999999999999987 6 8999999999998765321111000 00111111110
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhh------hccCceEEEeeCCCcchHHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ------TLQLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~------l~~ad~viiv~~~~~~s~~~~~~ 183 (295)
. . ..........++.+....||+|||||++........... ....|.+++|+.+.. -+++..
T Consensus 163 ----~-~-----~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t--gq~~~~ 230 (428)
T TIGR00959 163 ----K-G-----QSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMT--GQDAVN 230 (428)
T ss_pred ----C-C-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccc--hHHHHH
Confidence 0 0 001122334444433278999999999866422211121 224678888887653 345555
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
..+.+. ..+++.|+|+|+.+.... ...+..+...++.|+.
T Consensus 231 ~a~~f~-~~v~i~giIlTKlD~~~~----------~G~~lsi~~~~~~PI~ 270 (428)
T TIGR00959 231 TAKTFN-ERLGLTGVVLTKLDGDAR----------GGAALSVRSVTGKPIK 270 (428)
T ss_pred HHHHHH-hhCCCCEEEEeCccCccc----------ccHHHHHHHHHCcCEE
Confidence 555554 234667999999984221 1347777777887765
No 69
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.46 E-value=1.3e-12 Score=93.81 Aligned_cols=93 Identities=41% Similarity=0.561 Sum_probs=74.6
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccCCCC
Q 022525 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSS 115 (295)
Q Consensus 36 i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (295)
++++++|+||||++.+||..|++ .|++|+++|
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~~~~----------------------------------------------- 34 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAALAK-RGKRVLLID----------------------------------------------- 34 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEC-----------------------------------------------
Confidence 34566699999999999999999 999999999
Q ss_pred CCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch-hhhhhccCceEEEeeCCCcchHHHHHHHHHHHhc---C
Q 022525 116 PVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL-TTTQTLQLSGALIVSTPQDVALIDARKGITMFSK---V 191 (295)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~-~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~---~ 191 (295)
|+||+|++++.+.... ....+..+|.+++|+.++..++....+..+.... .
T Consensus 35 -------------------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~ 89 (99)
T cd01983 35 -------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIE 89 (99)
T ss_pred -------------------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhcc
Confidence 8999999999885320 1455668999999999999999999888653332 3
Q ss_pred CCCeeeEEec
Q 022525 192 QVPILGLVEN 201 (295)
Q Consensus 192 ~~~~~~~ViN 201 (295)
+....++|+|
T Consensus 90 ~~~~~~vv~N 99 (99)
T cd01983 90 GLRPVGVVVN 99 (99)
T ss_pred CCceEEEEeC
Confidence 4556667766
No 70
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.43 E-value=6.9e-12 Score=112.24 Aligned_cols=165 Identities=17% Similarity=0.144 Sum_probs=95.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
+.+|+++ +..|+||||+++.||..+++ .|++|++|++|++.+.....+....+ ..++++....
T Consensus 100 ~~vi~lv-G~~GvGKTTtaaKLA~~l~~-~G~kV~lV~~D~~R~aA~eQLk~~a~-------------~~~vp~~~~~-- 162 (429)
T TIGR01425 100 QNVIMFV-GLQGSGKTTTCTKLAYYYQR-KGFKPCLVCADTFRAGAFDQLKQNAT-------------KARIPFYGSY-- 162 (429)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCCEEEEcCcccchhHHHHHHHHhh-------------ccCCeEEeec--
Confidence 4677776 68999999999999999999 99999999999988654322211110 0111111100
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhh------hhccCceEEEeeCCCcchHHHHHHH
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT------QTLQLSGALIVSTPQDVALIDARKG 184 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~------~l~~ad~viiv~~~~~~s~~~~~~~ 184 (295)
. +........+.++.++...||+|||||++.......... .....+.+++|.++... +.+...
T Consensus 163 ---~------~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G--q~a~~~ 231 (429)
T TIGR01425 163 ---T------ESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG--QAAEAQ 231 (429)
T ss_pred ---C------CCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC--hhHHHH
Confidence 0 001122333344444425899999999986643211111 12235778888876542 223334
Q ss_pred HHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 185 ITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 185 ~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
.+.+.+ ..++-|+|+|+.|..... ..+-.+....+.|+.
T Consensus 232 a~~F~~-~~~~~g~IlTKlD~~arg----------G~aLs~~~~t~~PI~ 270 (429)
T TIGR01425 232 AKAFKD-SVDVGSVIITKLDGHAKG----------GGALSAVAATKSPII 270 (429)
T ss_pred HHHHHh-ccCCcEEEEECccCCCCc----------cHHhhhHHHHCCCeE
Confidence 444432 245678999999943221 224455555565554
No 71
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.42 E-value=9.6e-12 Score=113.89 Aligned_cols=172 Identities=18% Similarity=0.163 Sum_probs=107.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
|+.|.|++.++|+||||++++|+.+|++ +|++|..+..+++..... +. ....-.+. .+++.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~-~G~~V~~fK~Gpd~~d~~-~~---------~~~~g~~~--~~ld~------ 63 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRR-RGLRVQPFKVGPDYIDPA-YH---------TAATGRPS--RNLDS------ 63 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHh-CCCCcceeecCCCcccHH-HH---------HHHhCCCc--ccCCc------
Confidence 6789999999999999999999999999 999999998854321100 00 00000000 01110
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCc---------cchhhhhhccCceEEEeeCCCcc--hHH
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD---------AQLTTTQTLQLSGALIVSTPQDV--ALI 179 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~---------~~~~~~~l~~ad~viiv~~~~~~--s~~ 179 (295)
.....+.+...+..+. ..||++||+...|+-+ ....+.....+..+ +|+..... ++.
T Consensus 64 ----------~~~~~~~v~~~~~~~~-~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pvi-LV~~~~~~~~~~a 131 (451)
T PRK01077 64 ----------WMMGEELVRALFARAA-QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVV-LVVDASGMAQSAA 131 (451)
T ss_pred ----------eeCCHHHHHHHHHHhc-ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEE-EEECCchHHHHHH
Confidence 0112456777777777 7899999988865532 12333444444444 44444432 233
Q ss_pred HHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcccc
Q 022525 180 DARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIR 244 (295)
Q Consensus 180 ~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~ 244 (295)
.+...+..+ ..+.++.|+|+|++... . ......+..+..|++++++||+++.+.
T Consensus 132 ~l~~~~~~~-~~~i~i~GvI~N~v~~~-------~---~~~~l~~~l~~~gipvLG~IP~~~~l~ 185 (451)
T PRK01077 132 ALVLGFATF-DPDVRIAGVILNRVGSE-------R---HYQLLREALERCGIPVLGALPRDAALA 185 (451)
T ss_pred HHHHHHHHh-CCCCCEEEEEEECCCCh-------h---HHHHHHHHHHhcCCCEEEEeeCCcccC
Confidence 333333443 23678999999998621 0 012345556668999999999998874
No 72
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.41 E-value=1.2e-12 Score=104.06 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=91.9
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcc-cccc-CcccccccCCceeeccccccCC
Q 022525 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE-VTKD-MKMVPIENYGVKCMSMGFLVPS 113 (295)
Q Consensus 36 i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 113 (295)
|++..+|+||||++.+|+.+|++ +|+||.+++.-..+.. ..+.... +... ....+....+. +.......+.
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~-~g~~V~~~kP~~~~~~-----~~d~d~~~i~~~~~~~~~~~~~~~-~~~~~~~~p~ 74 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKK-AGYSVGYYKPVQTGIE-----KTNSDALLLQNISGTALDWDEVNP-YAFALPLSPH 74 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHH-CCCcEEEEEeeeeCCC-----CCchHHHHHHHHcCCCCchhccCC-eeeCCCCChH
Confidence 57889999999999999999999 9999999743332211 0000000 0000 00000000000 0000000000
Q ss_pred CCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccc------hhhhhhccCceEEEeeCCCcchHHHHHHHHHH
Q 022525 114 SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ------LTTTQTLQLSGALIVSTPQDVALIDARKGITM 187 (295)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~ 187 (295)
..............+...++.+. +.||+||||+++++.... ..+... ..+-+|+|+.+...++..+....+.
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~-~~~~vilV~~~~~~~~~~~~~~~~~ 152 (166)
T TIGR00347 75 IAADQEGRPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKL-LQLPVILVVRVKLGTINHTLLTVEH 152 (166)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHH-hCCCEEEEECCCCcHHHHHHHHHHH
Confidence 00000000122345677777777 899999999998754211 111111 2456888889999999999999999
Q ss_pred HhcCCCCeeeEEec
Q 022525 188 FSKVQVPILGLVEN 201 (295)
Q Consensus 188 l~~~~~~~~~~ViN 201 (295)
+++.+.++.|+|+|
T Consensus 153 l~~~~~~i~gvv~N 166 (166)
T TIGR00347 153 ARQTGLTLAGVILN 166 (166)
T ss_pred HHHCCCCeEEEEeC
Confidence 99999999999998
No 73
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.41 E-value=1.3e-11 Score=98.76 Aligned_cols=161 Identities=21% Similarity=0.222 Sum_probs=93.5
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccCCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSS 114 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (295)
.+..++.|+||||++.+++..+++ .|.+|++||+|+..+.....+..... ..++++.+. .
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~~~~~~l~~~~~-------------~~~~~~~~~------~ 62 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQLRVLGE-------------QVGVPVFEE------G 62 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCChHHHHHHHHhcc-------------cCCeEEEec------C
Confidence 344599999999999999999999 99999999999987654332221100 112222211 0
Q ss_pred CCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhh------hccCceEEEeeCCCcchHHHHHHHHHHH
Q 022525 115 SPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ------TLQLSGALIVSTPQDVALIDARKGITMF 188 (295)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~------l~~ad~viiv~~~~~~s~~~~~~~~~~l 188 (295)
.. ......+...+.......||+||||+++........... ....|.+++|+.+.. .. ........+
T Consensus 63 ~~-----~~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~-~~-~~~~~~~~~ 135 (173)
T cd03115 63 EG-----KDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMT-GQ-DAVNQAKAF 135 (173)
T ss_pred CC-----CCHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCC-Ch-HHHHHHHHH
Confidence 00 011222333333332278999999999865311111111 123788888888743 22 333344443
Q ss_pred -hcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 189 -SKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 189 -~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
+..+ ..++|+|+++..... ...-++....++|+.
T Consensus 136 ~~~~~--~~~viltk~D~~~~~----------g~~~~~~~~~~~p~~ 170 (173)
T cd03115 136 NEALG--ITGVILTKLDGDARG----------GAALSIRAVTGKPIK 170 (173)
T ss_pred HhhCC--CCEEEEECCcCCCCc----------chhhhhHHHHCcCeE
Confidence 3344 578999999843221 223347777777765
No 74
>PRK13768 GTPase; Provisional
Probab=99.41 E-value=1.9e-12 Score=109.56 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=85.1
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
|+++|.|+ ++||+||||++.+++..++. .|++|++||+|++...++ ..+...+.+.......- .....-|.+.
T Consensus 1 ~~~~i~v~-G~~G~GKTt~~~~~~~~l~~-~g~~v~~i~~D~~~~~~~----~~~~~~i~~~~~~~~v~-~~~~l~p~~~ 73 (253)
T PRK13768 1 MMYIVFFL-GTAGSGKTTLTKALSDWLEE-QGYDVAIVNLDPAVEYLP----YTPDFDVRDYVTAREIM-KKYGLGPNGA 73 (253)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHh-cCCceEEEECCCccccCC----CCCCcchhhheeHHHHH-HHcCCCCchH
Confidence 35666665 66999999999999999999 999999999999864432 22222222111110000 0000001111
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch------hhhhhcc--CceEEEeeCCCcchHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL------TTTQTLQ--LSGALIVSTPQDVALIDA 181 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~------~~~~l~~--ad~viiv~~~~~~s~~~~ 181 (295)
+... .......+..+.+.+.....|++|+|+|+......+ ....+.. ++.++.++......-..-
T Consensus 74 ~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d 146 (253)
T PRK13768 74 LIAS-------VDLLLTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSD 146 (253)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHH
Confidence 1111 011233444455555434569999999975442110 1111222 677888877644321111
Q ss_pred HHHHHHHh-----cCCCCeeeEEeccccC
Q 022525 182 RKGITMFS-----KVQVPILGLVENMSCF 205 (295)
Q Consensus 182 ~~~~~~l~-----~~~~~~~~~ViN~~~~ 205 (295)
.....++. +.+.+++ +|+|+.+.
T Consensus 147 ~~~~~~l~~~~~~~~~~~~i-~v~nK~D~ 174 (253)
T PRK13768 147 FVSLLLLALSVQLRLGLPQI-PVLNKADL 174 (253)
T ss_pred HHHHHHHHHHHHHHcCCCEE-EEEEhHhh
Confidence 11112111 3566665 89999984
No 75
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.40 E-value=1e-11 Score=112.07 Aligned_cols=164 Identities=23% Similarity=0.276 Sum_probs=100.5
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.+.+|.++ +..|+||||++++||..|++ .|++|++||+|+..+.....+.. + ....++++..
T Consensus 94 ~p~vI~lv-G~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R~aa~eQL~~-----l--------a~~~gvp~~~--- 155 (437)
T PRK00771 94 KPQTIMLV-GLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYRPAAYDQLKQ-----L--------AEKIGVPFYG--- 155 (437)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCCHHHHHHHHH-----H--------HHHcCCcEEe---
Confidence 35677776 78999999999999999999 99999999999876532111110 0 0001111110
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch------hhhhhccCceEEEeeCCCcchHHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL------TTTQTLQLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~------~~~~l~~ad~viiv~~~~~~s~~~~~~ 183 (295)
... .......+...++.+. .+|+|||||+|....... .+..+..+|.+++|+.+... .++..
T Consensus 156 ---~~~-----~~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~ 223 (437)
T PRK00771 156 ---DPD-----NKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKN 223 (437)
T ss_pred ---cCC-----ccCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHH
Confidence 000 1112344566666664 469999999986653211 23334568899999887664 33434
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
..+.+.+ .+++.|+|+|+++..... ..+-.+....+.|+.
T Consensus 224 ~a~~F~~-~l~i~gvIlTKlD~~a~~----------G~~ls~~~~~~~Pi~ 263 (437)
T PRK00771 224 QAKAFHE-AVGIGGIIITKLDGTAKG----------GGALSAVAETGAPIK 263 (437)
T ss_pred HHHHHHh-cCCCCEEEEecccCCCcc----------cHHHHHHHHHCcCEE
Confidence 4444332 356779999999843221 336666666676654
No 76
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.38 E-value=2.6e-11 Score=105.57 Aligned_cols=166 Identities=19% Similarity=0.151 Sum_probs=96.1
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.+.+|+++| ..|+||||++.+||..++. .|++|+++|+|++......-+ ..+ ....++.+++..
T Consensus 113 ~~~vi~lvG-pnGsGKTTt~~kLA~~l~~-~g~~V~Li~~D~~r~~a~eql-----~~~--------a~~~~i~~~~~~- 176 (318)
T PRK10416 113 KPFVILVVG-VNGVGKTTTIGKLAHKYKA-QGKKVLLAAGDTFRAAAIEQL-----QVW--------GERVGVPVIAQK- 176 (318)
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHHh-cCCeEEEEecCccchhhHHHH-----HHH--------HHHcCceEEEeC-
Confidence 468999985 8999999999999999999 999999999999764210000 000 011122222211
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhh------------ccCceEEEeeCCCcch
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT------------LQLSGALIVSTPQDVA 177 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l------------~~ad~viiv~~~~~~s 177 (295)
... + ........+..... ..||+|||||||........+..+ ...+.+++|+.+.. .
T Consensus 177 -----~~~---d-pa~~v~~~l~~~~~-~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~-g 245 (318)
T PRK10416 177 -----EGA---D-PASVAFDAIQAAKA-RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT-G 245 (318)
T ss_pred -----CCC---C-HHHHHHHHHHHHHh-CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC-C
Confidence 000 0 01122233333344 889999999998765221100000 13466777777774 3
Q ss_pred HHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 178 LIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
-........+.+. .++.++|+|+.+.... -..+-.+...++.|+.
T Consensus 246 ~~~~~~a~~f~~~--~~~~giIlTKlD~t~~----------~G~~l~~~~~~~~Pi~ 290 (318)
T PRK10416 246 QNALSQAKAFHEA--VGLTGIILTKLDGTAK----------GGVVFAIADELGIPIK 290 (318)
T ss_pred hHHHHHHHHHHhh--CCCCEEEEECCCCCCC----------ccHHHHHHHHHCCCEE
Confidence 3444443333322 3566899999984321 1346666677777765
No 77
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.38 E-value=2.2e-11 Score=106.85 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=100.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc-cccccCCCccccccCcccccccCCceeecccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
+++|+++|+ +|+||||+++.||..+.. .|++|++||+|++..... .+-... ...++.+...
T Consensus 241 ~~vI~LVGp-tGvGKTTTiaKLA~~L~~-~GkkVglI~aDt~RiaAvEQLk~ya--------------e~lgipv~v~-- 302 (436)
T PRK11889 241 VQTIALIGP-TGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYV--------------KTIGFEVIAV-- 302 (436)
T ss_pred CcEEEEECC-CCCcHHHHHHHHHHHHHH-cCCcEEEEecCCcchHHHHHHHHHh--------------hhcCCcEEec--
Confidence 578888866 999999999999999999 999999999998862211 111000 0011222110
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccC-CCccEEEEcCCCCCCccchhhhhh------ccCceEEEeeCCCcchHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGTGDAQLTTTQT------LQLSGALIVSTPQDVALIDAR 182 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~yD~iiiD~~~~~~~~~~~~~~l------~~ad~viiv~~~~~~s~~~~~ 182 (295)
. ....+...+..++. .+||+|||||++........+..+ ..-+.+++|+++.. .-.++.
T Consensus 303 ----~---------d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATt-k~~d~~ 368 (436)
T PRK11889 303 ----R---------DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSKDMI 368 (436)
T ss_pred ----C---------CHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCcc-ChHHHH
Confidence 0 13455666666651 369999999997654322111111 12366777766543 345566
Q ss_pred HHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 183 KGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 183 ~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
..++.+.. .++-++|++++|.... -..+-.+....+.|+.
T Consensus 369 ~i~~~F~~--~~idglI~TKLDET~k----------~G~iLni~~~~~lPIs 408 (436)
T PRK11889 369 EIITNFKD--IHIDGIVFTKFDETAS----------SGELLKIPAVSSAPIV 408 (436)
T ss_pred HHHHHhcC--CCCCEEEEEcccCCCC----------ccHHHHHHHHHCcCEE
Confidence 67777765 5667899999994322 1346667777776664
No 78
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=99.37 E-value=3e-12 Score=103.95 Aligned_cols=172 Identities=19% Similarity=0.179 Sum_probs=102.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC------ccccccCc--ccccccCCc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK------PEVTKDMK--MVPIENYGV 102 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~------~~~~~~~~--~~~~~~~~~ 102 (295)
..-+.|+++||||||||.+..||..||+ -+.+||+|..||.+ +++-.|+.+-. .++..... +-|. ..+
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~-~r~~vLiISTDPAH-NlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~--~e~ 93 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAK-VRESVLIISTDPAH-NLSDAFSQKFTKTPTKVEGFENLFAMEIDPN--VEM 93 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhc-cCCceEEeecCccc-chHHHHHHHhcCCCccccChhhheeeecCCc--hhh
Confidence 4667788999999999999999999999 89999999999998 55544432211 11111100 0010 000
Q ss_pred eeeccccccCCCCCC------------ccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc-ch-------------
Q 022525 103 KCMSMGFLVPSSSPV------------VWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA-QL------------- 156 (295)
Q Consensus 103 ~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~-~~------------- 156 (295)
.-++........... ..++....-.+..+++.++.-+||+||+||+|.-..- .+
T Consensus 94 ~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~lek~lgKl 173 (323)
T KOG2825|consen 94 GDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTTLEKGLGKL 173 (323)
T ss_pred hhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccchHHHHHHHHH
Confidence 000000000000000 0011222223444444444457999999999843210 00
Q ss_pred ---------------hhhhh----------------------------ccCceEEEeeCCCcchHHHHHHHHHHHhcCCC
Q 022525 157 ---------------TTTQT----------------------------LQLSGALIVSTPQDVALIDARKGITMFSKVQV 193 (295)
Q Consensus 157 ---------------~~~~l----------------------------~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~ 193 (295)
....+ -.+...|+|+.+...|+.++.|.+..+.+.++
T Consensus 174 ~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k~~i 253 (323)
T KOG2825|consen 174 LSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAKQGI 253 (323)
T ss_pred HHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHhcCC
Confidence 00000 02345799999999999999999999999998
Q ss_pred CeeeEEeccccCC
Q 022525 194 PILGLVENMSCFI 206 (295)
Q Consensus 194 ~~~~~ViN~~~~~ 206 (295)
+.=.+|+|+.-..
T Consensus 254 dthnIIVNQLL~~ 266 (323)
T KOG2825|consen 254 DTHNIIVNQLLFP 266 (323)
T ss_pred cccceeeeeccCC
Confidence 8888999987543
No 79
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=99.36 E-value=5e-11 Score=99.75 Aligned_cols=194 Identities=15% Similarity=0.099 Sum_probs=116.2
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcc-------cccccCCc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKM-------VPIENYGV 102 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~ 102 (295)
|++.|.|++.-.|+|||+++..|+..|.+ +|.+|..+ -|.+.... .......-.|...+ .+......
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~~-~g~~v~~~--KPi~~g~~---~~~~~~~~~D~~~l~~~~~~~~~~~~~~p 74 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALAS-QGKTVAGY--KPVAKGSK---ETPEGLRNKDALVLQSVSSIELPYEAVNP 74 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEE--CccccCCc---cCCCCCchHHHHHHHHhcCCCCCHHhccC
Confidence 35679999999999999999999999999 99999987 44332211 00000000011000 01110010
Q ss_pred eeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch---hh--hhhccCceEEEeeCCCcch
Q 022525 103 KCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL---TT--TQTLQLSGALIVSTPQDVA 177 (295)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~---~~--~~l~~ad~viiv~~~~~~s 177 (295)
..+ .+.............+.+.+.++.++ ..||+||||+.+|+..... .. .....---+++|+.....+
T Consensus 75 ~~~-----~~~~a~~~~~~~i~~~~i~~~~~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~ 148 (231)
T PRK12374 75 IAL-----SEEESSVAHSCPINYTLMSNGLANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGC 148 (231)
T ss_pred eec-----CCCcChHHcCCcCCHHHHHHHHHHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcCh
Confidence 001 01100001111122244666666677 8999999999986543211 00 1111123467777777778
Q ss_pred HHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccc
Q 022525 178 LIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDI 243 (295)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~ 243 (295)
+..+.-..+.+...++++.|+|+|+++.... ...+..+.+.+..+.++++.||+.+.+
T Consensus 149 in~~lLt~~~l~~~~~~~~gvV~N~~~~~~~--------~~~~~~~~l~~~~~~~~lg~iP~~~~~ 206 (231)
T PRK12374 149 INHALLTAQAIANDGLPLIGWVANRINPGLA--------HYAEIIDVLGKKLPAPLIGELPYLPRA 206 (231)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEeCccCchh--------hhhhHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999999999988899999999999874211 011234556666789999999997654
No 80
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.29 E-value=1.6e-10 Score=101.22 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=97.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
+++|+|++++ |+||||++++||..+.. .|++|.+|++|++.......+.... ...++.+..
T Consensus 206 ~~ii~lvGpt-GvGKTTt~akLA~~l~~-~g~~V~lItaDtyR~gAveQLk~ya-------------e~lgvpv~~---- 266 (407)
T PRK12726 206 HRIISLIGQT-GVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYA-------------DKLDVELIV---- 266 (407)
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHHHH-cCCeEEEEeCCccCccHHHHHHHHh-------------hcCCCCEEe----
Confidence 6899998875 99999999999999988 9999999999998753221111100 001111110
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhcc-CCCccEEEEcCCCCCCccchhhhh------hccCceEEEeeCCCcchHHHHHH
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVD-WGNLDILVIDMPPGTGDAQLTTTQ------TLQLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~yD~iiiD~~~~~~~~~~~~~~------l~~ad~viiv~~~~~~s~~~~~~ 183 (295)
. .....+...++.++ ...||+|||||++........+.. ....+.+++|.++. ....++..
T Consensus 267 -~----------~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag-~~~~d~~~ 334 (407)
T PRK12726 267 -A----------TSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG-MKSADVMT 334 (407)
T ss_pred -c----------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc-ccHHHHHH
Confidence 0 01345666666654 157999999999764321111111 11335656666553 34445555
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
..+.+. .+++-++|+++.|..... ..+-.+....|.|+.
T Consensus 335 i~~~f~--~l~i~glI~TKLDET~~~----------G~~Lsv~~~tglPIs 373 (407)
T PRK12726 335 ILPKLA--EIPIDGFIITKMDETTRI----------GDLYTVMQETNLPVL 373 (407)
T ss_pred HHHhcC--cCCCCEEEEEcccCCCCc----------cHHHHHHHHHCCCEE
Confidence 555544 345668999999943221 346666777777665
No 81
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=99.29 E-value=1.8e-10 Score=98.11 Aligned_cols=226 Identities=14% Similarity=0.050 Sum_probs=121.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
|++|+|++.| |+||||++.+|+..|++ +| +|.+|+.|+.... ..+. .|.......+......++...+
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~-~G-~V~~IKhd~h~~~-----~~~g----~Ds~~~~~aGa~~v~~~s~~~~ 68 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSG-RG-RVGTVKHMDTERL-----NPDG----TDTGRHFDAGADVVYGLTDGEW 68 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHh-CC-CEEEEEEcCCCcC-----CCCC----CCcHHHHHCCCcEEEEecCCeE
Confidence 5799999885 99999999999999999 99 8999999985411 1110 0000000000000111111000
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCc-eEEEeeCCCcchHHHHHHHHHHH-
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLS-GALIVSTPQDVALIDARKGITMF- 188 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad-~viiv~~~~~~s~~~~~~~~~~l- 188 (295)
.. ... ...+..+++.+. ..+|+||+|+.+.....-+....+..+| .+++|+.|++..+.++....+..
T Consensus 69 ~~-----~~~----~~~l~~~l~~l~-~~~D~vlVEG~k~~~~pki~v~~~~~~~~~~l~p~~~s~~d~~~lve~~~~~~ 138 (274)
T PRK14493 69 VA-----SGR----DRSLDDALDDLA-PGMDYAVVEGFKDSRLPKVVLGDMDADSDVVARAPTAADLDTEDLVAALESQP 138 (274)
T ss_pred EE-----Eec----CCCHHHHHHhhC-cCCCEEEEECCCCCCCCEEEEEecccCCcEEEecCCCCccCHHHHHHHHHhcC
Confidence 00 000 123666666666 6799999999987664344455555677 89999998888755554433322
Q ss_pred ------------hc-CCCCeeeEEeccccCCC--CC-CCCCccccC------------CchhhHHHHHhCCcEEEeecCC
Q 022525 189 ------------SK-VQVPILGLVENMSCFIC--PH-CSEPSFIFG------------KGGTHRTAAEMGLKVIGEIPIE 240 (295)
Q Consensus 189 ------------~~-~~~~~~~~ViN~~~~~~--~~-~~~~~~~~~------------~~~~~~~~~~~g~~~~~~Ip~~ 240 (295)
.. ...+..|.+.+.....+ .. ....-..+. ....+++.+++++.-+..+.+.
T Consensus 139 ~~l~~~~li~~~~~~~~~~~~GAi~~F~G~VR~r~~~~g~~v~~L~ye~y~~~A~~~l~~I~~e~~~~~~~~~v~v~Hr~ 218 (274)
T PRK14493 139 PYVTLESLVAKVKRSPDADKAGAIATFTGRVRAKEDADDEPTEYLEFEKYDGVADERMAAIREELKQRDGVFEVLLHHRT 218 (274)
T ss_pred CCCCHHHHHHHHhccCCCCCCcEEEEEEeEEEccccCCCCcEEEEEEEeCCHHHHHHHHHHHHHHHHhCCCceEEEEEee
Confidence 11 11111133333222111 00 000000000 0124455556676555555555
Q ss_pred ccccccccCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 022525 241 MDIRKGSDDGVPVVISAPDSTVSRAYGEVAVNVVNRLQELAK 282 (295)
Q Consensus 241 ~~~~~a~~~g~~i~~~~~~s~~~~~~~~l~~~l~~~~~~~~~ 282 (295)
..+ .-|.+++...-.++-..+.-+.++++++++..+.+
T Consensus 219 G~l----~vge~~v~v~v~a~hR~~af~a~~~~id~lK~~~p 256 (274)
T PRK14493 219 GVI----EAGEDIVFVVVLAGHRQEAFRAVSDGIDRLKDEVP 256 (274)
T ss_pred ccc----cCCCeEEEEEEecCCHHHHHHHHHHHHHHHhhcCC
Confidence 554 55666666544445555666677777777765544
No 82
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=99.28 E-value=2.6e-11 Score=99.23 Aligned_cols=186 Identities=17% Similarity=0.205 Sum_probs=108.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeec-cccc
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMS-MGFL 110 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 110 (295)
|.|.|++...|+|||+++..|+.+|.+ +|.+|.++--=.++.. ... |...+..........-. ....
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~-~g~~v~~~KPi~~~~~--------~d~---d~~~~~~~~~~~~~~~~~~~~~ 68 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRR-RGIKVGYFKPIQTGPE--------DDE---DAELIRELFGLSEPPDDPSPYT 68 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHH-TTSEEEEEEEEEESCC--------CSS---HHHHHHHHCCTCCCHHHHECEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHh-CCCceEEEeeeEecCC--------CCc---hHHHHHHHhCCCcccccccccc
Confidence 568899999999999999999999999 9999987732211111 000 10000000000000000 0000
Q ss_pred cCCC--CCCccCCchHHHHHHHH-HHhccCCCccEEEEcCCCCCCcc------chhhhhhccCceEEEeeCCCcchHHHH
Q 022525 111 VPSS--SPVVWRGPMVMSALRKM-SREVDWGNLDILVIDMPPGTGDA------QLTTTQTLQLSGALIVSTPQDVALIDA 181 (295)
Q Consensus 111 ~~~~--~~~~~~~~~~~~~l~~~-~~~l~~~~yD~iiiD~~~~~~~~------~~~~~~l~~ad~viiv~~~~~~s~~~~ 181 (295)
.... .............+.++ ++.+. ..+|++||+...+.... +..+.....+ -+|+|......++..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~-~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~a-~vIlV~~~~~g~i~~~ 146 (199)
T PF13500_consen 69 FDEPASPHLAAELEGVDIDLERIIYKELA-EEYDVVLVEGAGGLMVPIFSGDLNADIAKALGA-PVILVASGRLGTINHT 146 (199)
T ss_dssp ESSSS-HHHHHHHHT----HHHHHHHHCH-TTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESSTTHHHHH
T ss_pred cCcccCHHHHhhccCCcccHHHHHHHHHh-hcCCEEEEeCCcccCcccccChHHHHHHHHcCC-CEEEEeCCCCCCHHHH
Confidence 0000 00000000000113333 46777 89999999999876532 1222333344 4666777777799999
Q ss_pred HHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcccc
Q 022525 182 RKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIR 244 (295)
Q Consensus 182 ~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~ 244 (295)
...++.++..+.++.|+|+|+++.. +..+.+.+..++++++.||+++.+.
T Consensus 147 l~~~~~~~~~g~~v~GvI~N~~~~~-------------~~~~~l~~~~~i~vlg~iP~~~~L~ 196 (199)
T PF13500_consen 147 LLTIEALKQRGIRVLGVILNRVPEP-------------ENLEALREKSGIPVLGVIPEDPDLS 196 (199)
T ss_dssp HHHHHHHHCTTS-EEEEEEEECTCC-------------HHHHHHHHHHCCEECE---SSTT--
T ss_pred HHHHHHHHhcCCCEEEEEEECCCCH-------------HHHHHHHHhCCCCEEEECCCCcccc
Confidence 9999999999999999999997621 4688888999999999999999874
No 83
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.26 E-value=2.5e-10 Score=104.94 Aligned_cols=196 Identities=15% Similarity=0.162 Sum_probs=109.5
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccccc-------CcccccccCCceeec
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-------MKMVPIENYGVKCMS 106 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~ 106 (295)
|.|++...++|||++++.|+..|++ +|.+|..+ .+++.+.......+. ....+. ....|....+...+.
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~-~G~~v~~f--Kp~~~~~~s~~~~~~-~e~~~a~~~qa~a~~~~~~~~~nPv~lk 76 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILAR-RGYRVAPF--KSQNMSLNSFVTKEG-GEIAIAQATQALAAGIEPSVHMNPILLK 76 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHh-CCCeEEEE--CCcccccCccccCCC-chhHHHHHHHHHhCCCCchhccCCEEeC
Confidence 4688999999999999999999999 99999977 555322222211111 001000 011121222222221
Q ss_pred c-----------ccccCCCCCC-c--cCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc--------chhhhhhccC
Q 022525 107 M-----------GFLVPSSSPV-V--WRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA--------QLTTTQTLQL 164 (295)
Q Consensus 107 ~-----------~~~~~~~~~~-~--~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~--------~~~~~~l~~a 164 (295)
. +......... . .......+.+.+.+..+. ..||+||||+++++.+. ...+..+..+
T Consensus 77 ~~~~~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~a 155 (475)
T TIGR00313 77 PKGNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLANMRIAELANA 155 (475)
T ss_pred cCCCCcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchHHHHHHHhCC
Confidence 1 1100000000 0 001234566677777777 78999999999876531 1233334456
Q ss_pred ceEEEeeCCCcc-hHHHHHHHHHHHhcC-CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcc
Q 022525 165 SGALIVSTPQDV-ALIDARKGITMFSKV-QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMD 242 (295)
Q Consensus 165 d~viiv~~~~~~-s~~~~~~~~~~l~~~-~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~ 242 (295)
+.+++ +..... .+..+...+..++.. +..+.|+|+|+++.. . ...+...+.+.+..|+++++++|+++.
T Consensus 156 pVILV-~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~-------~-~~~~~~~~~l~e~~gipvLG~ip~~~~ 226 (475)
T TIGR00313 156 DAILV-ADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGN-------V-DVLKSGIEKLEELTGIPVLGVLPYDEN 226 (475)
T ss_pred CEEEE-EeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCc-------H-HHHHHHHHHHHHhhCCCEEEEecCCCc
Confidence 65555 444443 334555555555543 357889999998731 1 111123445566679999999998765
Q ss_pred c
Q 022525 243 I 243 (295)
Q Consensus 243 ~ 243 (295)
+
T Consensus 227 l 227 (475)
T TIGR00313 227 L 227 (475)
T ss_pred C
Confidence 4
No 84
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=99.24 E-value=2.9e-10 Score=103.12 Aligned_cols=75 Identities=23% Similarity=0.195 Sum_probs=61.6
Q ss_pred hhhhhccccccccCCCcc-ccCCCCeEEEEeeCCC---CCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccC
Q 022525 8 FTRLGGVRYYAAFGSKDL-KIDGVKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (295)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~-~~~~~~~vI~i~s~kG---GvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~ 83 (295)
.+.|..+|+.+.+..... .....+|+|.|+|... |.||||++.|||..|++ .|+||+++ ...|++...||.+
T Consensus 31 ~e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~-~Gkkvlli---LR~Psl~~~fg~k 106 (557)
T PRK13505 31 LEPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLGDALNK-IGKKTVIA---LREPSLGPVFGIK 106 (557)
T ss_pred HHhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHH-cCCeEEEE---EecCCcccccCCC
Confidence 477888888887765433 1222479999999999 99999999999999999 99999999 7788988888877
Q ss_pred CCc
Q 022525 84 QKP 86 (295)
Q Consensus 84 ~~~ 86 (295)
...
T Consensus 107 gga 109 (557)
T PRK13505 107 GGA 109 (557)
T ss_pred CCc
Confidence 643
No 85
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=99.22 E-value=2.9e-10 Score=92.96 Aligned_cols=195 Identities=14% Similarity=0.097 Sum_probs=123.1
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccc-------cccCCc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVP-------IENYGV 102 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~ 102 (295)
|++.+.|++.--|||||.+++.|+.+|.+ +|++|... -|-+. |......-+|...... ....+.
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~-~g~~~~~~--KPVqs------G~~~~~~~~D~~~l~~~~~~~~~~~~~~p 71 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQ-QGYSVAGY--KPVQT------GSEETAENSDALVLQRLSGLDLSYELINP 71 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHh-CCCeeEEE--Cceee------CCCCCCCCchHHHHHHhcCCCcccccccc
Confidence 47899999999999999999999999999 99999876 22221 1111111111100000 011111
Q ss_pred eee--ccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccc---hhhhhh--ccCceEEEeeCCCc
Q 022525 103 KCM--SMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ---LTTTQT--LQLSGALIVSTPQD 175 (295)
Q Consensus 103 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~---~~~~~l--~~ad~viiv~~~~~ 175 (295)
+.+ |..+..+...+ ......+.+..-+..+. +.||+|||...+|+-... .....+ ...--+|+|+....
T Consensus 72 y~f~~P~sPhlAa~~e---g~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~L 147 (223)
T COG0132 72 YRFKEPLSPHLAAELE---GRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKL 147 (223)
T ss_pred eecCCCCCcHHHHhhc---CCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCc
Confidence 111 01111111111 11244566777776777 799999999999875321 111111 11244788999999
Q ss_pred chHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccc
Q 022525 176 VALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRK 245 (295)
Q Consensus 176 ~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~ 245 (295)
.++..+.-.++.++..+++..|+|+|.+...... . ......+.+..+.++++.+|+.++..+
T Consensus 148 GtINHtlLt~eal~~~gl~l~G~I~n~~~~~~~~------~--~~~~~~l~~~~~~p~~g~~p~~~~~~~ 209 (223)
T COG0132 148 GTINHTLLTVEALRARGLPLAGWVANGINPELDH------Y--AEINATLLKRIGAPLLGIIPYLPESEE 209 (223)
T ss_pred cHHHHHHHHHHHHHHCCCCEEEEEEccCCCchhH------H--HHHHHHHHHhcCCCccccccCCccccc
Confidence 9999999999999999999999999998743211 1 122335677789999999999776533
No 86
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.19 E-value=6.6e-10 Score=101.22 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=90.6
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhC--CCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~--g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (295)
.+.+|+|+ +.+|+||||++.+||..++. . |++|.+|++|.+.......+.... ...++.+..
T Consensus 349 ~G~vIaLV-GPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRigA~EQLk~ya-------------~iLgv~v~~- 412 (559)
T PRK12727 349 RGGVIALV-GPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVGGREQLHSYG-------------RQLGIAVHE- 412 (559)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHH-hcCCCceEEEecccccccHHHHHHHhh-------------cccCceeEe-
Confidence 36899998 55899999999999999887 4 589999999987633211110000 000111100
Q ss_pred ccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhh-------hhhccCceEEEeeCCCcchHHH
Q 022525 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTT-------TQTLQLSGALIVSTPQDVALID 180 (295)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~-------~~l~~ad~viiv~~~~~~s~~~ 180 (295)
......+...++.+ ..||+|||||++......... ......+.+|++.... ..+
T Consensus 413 --------------a~d~~~L~~aL~~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss---~~D 473 (559)
T PRK12727 413 --------------ADSAESLLDLLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH---FSD 473 (559)
T ss_pred --------------cCcHHHHHHHHHHh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC---hhH
Confidence 01124566666666 469999999997543211101 1112234445544443 444
Q ss_pred HHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 181 ARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
....++.+... ...++|+|+++... .+ ..+-.+....+.++.
T Consensus 474 l~eii~~f~~~--~~~gvILTKlDEt~--------~l--G~aLsv~~~~~LPI~ 515 (559)
T PRK12727 474 LDEVVRRFAHA--KPQGVVLTKLDETG--------RF--GSALSVVVDHQMPIT 515 (559)
T ss_pred HHHHHHHHHhh--CCeEEEEecCcCcc--------ch--hHHHHHHHHhCCCEE
Confidence 44555555543 56789999998421 11 335555666666554
No 87
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.19 E-value=1e-09 Score=97.63 Aligned_cols=158 Identities=13% Similarity=0.128 Sum_probs=90.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH-HHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL-ASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l-a~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
+++|+| .+.+|+||||++++||..+ .. .|++|+++|+|++.......+... ....++++..
T Consensus 223 ~~vi~l-vGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~eQLk~y-------------Ae~lgvp~~~--- 284 (432)
T PRK12724 223 RKVVFF-VGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAIEQLKRY-------------ADTMGMPFYP--- 284 (432)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhhHHHHHHHH-------------HHhcCCCeee---
Confidence 355656 4899999999999999876 46 899999999999875422111000 0011111110
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhc---c------CceEEEeeCCCcchHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL---Q------LSGALIVSTPQDVALID 180 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~---~------ad~viiv~~~~~~s~~~ 180 (295)
...+..+.+.+....||+|||||++........+..+. . -..+++|.++.. ...+
T Consensus 285 ---------------~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~-~~~~ 348 (432)
T PRK12724 285 ---------------VKDIKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS-SYHH 348 (432)
T ss_pred ---------------hHHHHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC-CHHH
Confidence 01122233333226899999999754422121111111 1 124666666555 3455
Q ss_pred HHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 181 ARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
+....+.+... ++-++|+++.|..... ..+-.+....+.|+.
T Consensus 349 ~~~~~~~f~~~--~~~glIlTKLDEt~~~----------G~il~i~~~~~lPI~ 390 (432)
T PRK12724 349 TLTVLKAYESL--NYRRILLTKLDEADFL----------GSFLELADTYSKSFT 390 (432)
T ss_pred HHHHHHHhcCC--CCCEEEEEcccCCCCc----------cHHHHHHHHHCCCEE
Confidence 56666666444 4557999999843221 335666666676664
No 88
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.19 E-value=6.3e-10 Score=84.94 Aligned_cols=124 Identities=18% Similarity=0.178 Sum_probs=94.1
Q ss_pred eeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccCCCCC
Q 022525 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSP 116 (295)
Q Consensus 37 ~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (295)
..++| +|||+++.+|...|.+ +|.+|..+....+
T Consensus 5 ~~~~~-~Gkt~~~~~l~~~l~~-~~~~v~~~kp~~~-------------------------------------------- 38 (134)
T cd03109 5 GTGTD-IGKTVATAILARALKE-KGYRVAPLKPVQT-------------------------------------------- 38 (134)
T ss_pred eCCCC-cCHHHHHHHHHHHHHH-CCCeEEEEecCCC--------------------------------------------
Confidence 33566 9999999999999999 9999999966654
Q ss_pred CccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc------chhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhc
Q 022525 117 VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSK 190 (295)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~ 190 (295)
+|++||+.++|+... ......... .-+++|+.++..++.++...++.++.
T Consensus 39 -----------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~ 94 (134)
T cd03109 39 -----------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARI 94 (134)
T ss_pred -----------------------CCEEEEECCCccccCCCCCCCHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHh
Confidence 688999988776522 111111112 24788888888899999999999999
Q ss_pred CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeec
Q 022525 191 VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIP 238 (295)
Q Consensus 191 ~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip 238 (295)
.+..+.+++.|++.... ... ....+.+.+.++.++++.||
T Consensus 95 ~g~~i~gvi~N~~~~~~-------~~~-~~~~~~i~~~~gip~LG~IP 134 (134)
T cd03109 95 KGIILNGVLGNVIVEKE-------GLA-TLNVETIERLTGIPVLGIVP 134 (134)
T ss_pred cCCceeEEEEccCCCcc-------chh-hhhHHHHHHhcCCCEEEeCC
Confidence 99999999999987321 111 13477888999999999887
No 89
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.17 E-value=3.3e-10 Score=102.48 Aligned_cols=160 Identities=21% Similarity=0.236 Sum_probs=91.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la-~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
+++|+|+++ +||||||++++||..++ ...|++|++||+|++......-+. .+. ...++.+...
T Consensus 221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~-----~~a--------~~~~vp~~~~-- 284 (424)
T PRK05703 221 GGVVALVGP-TGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLK-----TYA--------KIMGIPVEVV-- 284 (424)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHH-----HHH--------HHhCCceEcc--
Confidence 578888855 99999999999999998 426899999999997532110000 000 0011111000
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch---hhhhhcc-C---ceEEEeeCCCcchHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL---TTTQTLQ-L---SGALIVSTPQDVALIDAR 182 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~---~~~~l~~-a---d~viiv~~~~~~s~~~~~ 182 (295)
.....+...+..+ ..||+|||||++....... .+..+.. + ..+++|+... .....+.
T Consensus 285 -------------~~~~~l~~~l~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~-~~~~~l~ 348 (424)
T PRK05703 285 -------------YDPKELAKALEQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT-TKYEDLK 348 (424)
T ss_pred -------------CCHHhHHHHHHHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC-CCHHHHH
Confidence 0023455555555 4699999999965443211 1222222 2 2334444433 3455666
Q ss_pred HHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 183 KGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 183 ~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
..++.+...+ +-++|+++++.... + ..+-.+....+.++.
T Consensus 349 ~~~~~f~~~~--~~~vI~TKlDet~~--------~--G~i~~~~~~~~lPv~ 388 (424)
T PRK05703 349 DIYKHFSRLP--LDGLIFTKLDETSS--------L--GSILSLLIESGLPIS 388 (424)
T ss_pred HHHHHhCCCC--CCEEEEeccccccc--------c--cHHHHHHHHHCCCEE
Confidence 6666666554 45799999984221 1 336666667777665
No 90
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=99.17 E-value=5.5e-10 Score=107.24 Aligned_cols=178 Identities=15% Similarity=0.174 Sum_probs=107.3
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
|++.|.|.+...|+|||+++..|+..|.+ +|.+|..+--..+.|- ....... .+
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~-~G~~Vg~fKPi~~~p~-----------~~~~~~~----------~~---- 54 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALER-KGVKVGFFKPIAQPPL-----------TMSEVEA----------LL---- 54 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEeCCcccCCC-----------CHHHHHH----------HH----
Confidence 36789999999999999999999999999 9999999863333210 0000000 00
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch------hhhhhccCceEEEeeCCCcchHHH---
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL------TTTQTLQLSGALIVSTPQDVALID--- 180 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~------~~~~l~~ad~viiv~~~~~~s~~~--- 180 (295)
... ......+.+...++.+. .+||+||||++.+.+.... .+... ..+-+|+|+.+...++.+
T Consensus 55 --~~~-----~~~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~-L~~pVILV~~~~~~si~d~~~ 125 (684)
T PRK05632 55 --ASG-----QLDELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKN-LGAEVVLVSSGGNDTPEELAE 125 (684)
T ss_pred --hcc-----CChHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHH-hCCCEEEEECCCCCChHHHHH
Confidence 000 01123455666667777 8999999999976553211 11111 135678888777766544
Q ss_pred -HHHHHHHHh-cCCCCeeeEEecc--ccCCCCCCCCCcccc----C-----CchhhHHHHHhCCcEEEeecCCcccc
Q 022525 181 -ARKGITMFS-KVQVPILGLVENM--SCFICPHCSEPSFIF----G-----KGGTHRTAAEMGLKVIGEIPIEMDIR 244 (295)
Q Consensus 181 -~~~~~~~l~-~~~~~~~~~ViN~--~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~g~~~~~~Ip~~~~~~ 244 (295)
+....+.+. ..+.+..|+|+|+ ++.. ....-...+ . ...........+++++++||+++.+.
T Consensus 126 ~i~~~~~~l~~~~~~~v~GVIvNr~~v~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~ 200 (684)
T PRK05632 126 RIELAASSFGGAKNANILGVIINKLNAPVD--EQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLI 200 (684)
T ss_pred HHHHHHHHhccCCCCcEEEEEEECCCCCHH--HHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccC
Confidence 444444544 4568899999999 4421 000000000 0 00012234456889999999999876
No 91
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.17 E-value=9.6e-11 Score=79.45 Aligned_cols=78 Identities=60% Similarity=1.123 Sum_probs=59.3
Q ss_pred cEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccC
Q 022525 141 DILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFG 218 (295)
Q Consensus 141 D~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~ 218 (295)
||.|||+|||.++..+++......+..|+|++|...+...+.+.++.+++.+.+++|+|-||....++.+.+..+.++
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp~Cg~~~~iFg 79 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFVCPHCGERIYIFG 79 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-TTT--EEETTT
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCCCCCCeecCCC
Confidence 899999999999887777777778999999999999999999999999999999999999999988888776655543
No 92
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.16 E-value=1.5e-09 Score=95.55 Aligned_cols=215 Identities=21% Similarity=0.172 Sum_probs=123.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccccc
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (295)
+.|..+-+--|.||||+|.-||.+|.+ +|++|++|-||..-|..-.-+.. -....++++.+.+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~-------------La~q~~v~~f~~~--- 162 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQ-------------LAEQVGVPFFGSG--- 162 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHH-------------HHHHcCCceecCC---
Confidence 344444588899999999999999999 99999999999988763211100 0011122222110
Q ss_pred CCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch------hhhhhccCceEEEeeCCCcchHHHHHHHH
Q 022525 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL------TTTQTLQLSGALIVSTPQDVALIDARKGI 185 (295)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~------~~~~l~~ad~viiv~~~~~~s~~~~~~~~ 185 (295)
.+....+-.++.++.++...||+|||||++.+....- .+.....-|.+++|++... =+++...-
T Consensus 163 --------~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~--GQdA~~~A 232 (451)
T COG0541 163 --------TEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI--GQDAVNTA 232 (451)
T ss_pred --------CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc--chHHHHHH
Confidence 0111234456666666657899999999987764322 2333345588888876544 33444444
Q ss_pred HHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCC--cEEEeecCCccccccccCCCceEEcCCCChHH
Q 022525 186 TMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGL--KVIGEIPIEMDIRKGSDDGVPVVISAPDSTVS 263 (295)
Q Consensus 186 ~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~Ip~~~~~~~a~~~g~~i~~~~~~s~~~ 263 (295)
+.++ ..+++-|+|+++.|..... ..+-.+....|. +++++=..-..+. .+.|++-+.
T Consensus 233 ~aF~-e~l~itGvIlTKlDGdaRG----------GaALS~~~~tg~PIkFiGtGEki~dLE----------~F~P~R~as 291 (451)
T COG0541 233 KAFN-EALGITGVILTKLDGDARG----------GAALSARAITGKPIKFIGTGEKIDDLE----------PFHPDRFAS 291 (451)
T ss_pred HHHh-hhcCCceEEEEcccCCCcc----------hHHHhhHHHHCCCeEEEecCCCcccCC----------CcChHHHHH
Confidence 4443 2346779999999854222 224444455554 4454322222221 123544444
Q ss_pred H-----HHHHHHHHHHHHHHHHHHhhcCCCcccCCC
Q 022525 264 R-----AYGEVAVNVVNRLQELAKEQEHPESNSTRF 294 (295)
Q Consensus 264 ~-----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 294 (295)
+ ++..|.+.+.+.+.+...+....++.++.|
T Consensus 292 RILGMGDv~sLvEk~~~~~d~e~a~~~~~kl~~g~F 327 (451)
T COG0541 292 RILGMGDVLSLIEKAEEVVDEEEAEKLAEKLKKGKF 327 (451)
T ss_pred HhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHhCCC
Confidence 3 456777777776666554444444444444
No 93
>PRK00784 cobyric acid synthase; Provisional
Probab=99.14 E-value=1.7e-09 Score=100.15 Aligned_cols=200 Identities=14% Similarity=0.160 Sum_probs=108.6
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcc-------cccccCCc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKM-------VPIENYGV 102 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~ 102 (295)
|++.|.|++...|||||++++.|+..|++ +|.+|..+ .+++.+.....+.+. ....|.... .+....+.
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~-~G~~v~~~--Kpv~~~~~~~~~~dg-~~~~Da~~l~~~~~~~~~~~~i~P 76 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILAR-RGYRVAPF--KAQNMSLNSAVTADG-GEIGRAQALQAEAAGVEPSVDMNP 76 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEecc--cchhccccceECCCC-CeeHHHHHHHHHhCCCCchhccCC
Confidence 36889999999999999999999999999 99999877 444322111111100 000111000 00000111
Q ss_pred eeec-ccc-----ccCCCC--CC-----ccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc--------chhhhhh
Q 022525 103 KCMS-MGF-----LVPSSS--PV-----VWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA--------QLTTTQT 161 (295)
Q Consensus 103 ~~~~-~~~-----~~~~~~--~~-----~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~--------~~~~~~l 161 (295)
..+. ..+ ...... .+ ........+.+...+..+. ..||++||+..+++-.. ...+...
T Consensus 77 ~~~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~ 155 (488)
T PRK00784 77 VLLKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRDIANMGFAEA 155 (488)
T ss_pred EEecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCCchhHHHHHH
Confidence 1110 000 000000 00 0011234566677777777 79999999987444310 2222233
Q ss_pred ccCceEEEeeCCCcc-hHHHHHHHHHHHhc-CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecC
Q 022525 162 LQLSGALIVSTPQDV-ALIDARKGITMFSK-VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPI 239 (295)
Q Consensus 162 ~~ad~viiv~~~~~~-s~~~~~~~~~~l~~-~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~ 239 (295)
..+.. |+|+..... ++..+...++.+.. .+.++.|+|+|+++.. . ..-+...+.+.+..++++++.||+
T Consensus 156 l~~PV-ILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~-------~-~~~~~~~~~l~~~~gipvLG~iP~ 226 (488)
T PRK00784 156 ADAPV-ILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGD-------I-SLLEPGLDWLEELTGVPVLGVLPY 226 (488)
T ss_pred cCCCE-EEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCC-------H-HHHHHHHHHHHHhcCCCEEEEcCC
Confidence 33444 444444333 46666655566553 3468999999999731 0 000123444566679999999999
Q ss_pred Cccc
Q 022525 240 EMDI 243 (295)
Q Consensus 240 ~~~~ 243 (295)
++.+
T Consensus 227 ~~~L 230 (488)
T PRK00784 227 LDDL 230 (488)
T ss_pred CcCC
Confidence 8765
No 94
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.11 E-value=6e-09 Score=95.39 Aligned_cols=171 Identities=18% Similarity=0.198 Sum_probs=98.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPS 113 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (295)
|.|++...|+|||++++.|+.+|++ +|.+|..+-.-+.. .++ .+.....-.+. .+++
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~-~G~~V~~fK~g~d~--------~D~--~~~~~~~g~~~--~~ld---------- 58 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSR-RKLRVQPFKVGPDY--------IDP--MFHTQATGRPS--RNLD---------- 58 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH-CCCceeEEccCCCC--------CCH--HHHHHHhCCch--hhCC----------
Confidence 6789999999999999999999999 99999998542110 010 00000000000 0000
Q ss_pred CCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCc---------cchhhhhhccCceEEEeeCCCc-chHHHHHH
Q 022525 114 SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD---------AQLTTTQTLQLSGALIVSTPQD-VALIDARK 183 (295)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~---------~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~ 183 (295)
......+.+...+..+. ..+|++||....|+-+ ....+.....+..++++-.... .++..+..
T Consensus 59 ------~~~~~~~~i~~~~~~~~-~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~~~~t~~al~~ 131 (449)
T TIGR00379 59 ------SFFMSEAQIQECFHRHS-KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQRLSRSAAAIVL 131 (449)
T ss_pred ------cccCCHHHHHHHHHHhc-ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCchHHHHHHHHHH
Confidence 00112566777787777 7899999999866531 1223333334444444433211 11222222
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcccc
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIR 244 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~ 244 (295)
....+ ..+.++.|+|+|++... ... ....+.+.+..+++++++||+++.+.
T Consensus 132 ~~~~~-~~~i~i~GvIlN~v~~~-------~~~--~~~~~~i~~~~gipvLG~IP~~~~l~ 182 (449)
T TIGR00379 132 GYRSF-DPGVKLKGVILNRVGSE-------RHL--EKLKIAVEPLRGIPILGVIPRQQDLK 182 (449)
T ss_pred HHHhh-CCCCCEEEEEEECCCCH-------HHH--HHHHHHHHHhCCCCEEEEecCccccC
Confidence 22222 35788999999998721 111 11233444456999999999998874
No 95
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.09 E-value=2.9e-09 Score=86.54 Aligned_cols=173 Identities=22% Similarity=0.223 Sum_probs=98.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
+++|+++ +-.||||||+++-||+.+.. +|++|.+|-+|........-+. .+ .+..++.+...
T Consensus 1 p~vi~lv-GptGvGKTTt~aKLAa~~~~-~~~~v~lis~D~~R~ga~eQL~-----~~--------a~~l~vp~~~~--- 62 (196)
T PF00448_consen 1 PKVIALV-GPTGVGKTTTIAKLAARLKL-KGKKVALISADTYRIGAVEQLK-----TY--------AEILGVPFYVA--- 62 (196)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHHHH-TT--EEEEEESTSSTHHHHHHH-----HH--------HHHHTEEEEES---
T ss_pred CEEEEEE-CCCCCchHhHHHHHHHHHhh-ccccceeecCCCCCccHHHHHH-----HH--------HHHhccccchh---
Confidence 3778887 66789999999999999999 7999999999987633211110 00 01112221110
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch------hhhhhccCceEEEeeCCCcchHHHHHHH
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL------TTTQTLQLSGALIVSTPQDVALIDARKG 184 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~------~~~~l~~ad~viiv~~~~~~s~~~~~~~ 184 (295)
.. .....+.+.+.++....++||+|+|||++....... .+.....-+.+++|..+... -..+...
T Consensus 63 --~~------~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~-~~~~~~~ 133 (196)
T PF00448_consen 63 --RT------ESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG-QEDLEQA 133 (196)
T ss_dssp --ST------TSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG-GHHHHHH
T ss_pred --hc------chhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC-hHHHHHH
Confidence 00 011234455555555436899999999964432111 11222245677777777664 3444455
Q ss_pred HHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccc
Q 022525 185 ITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDI 243 (295)
Q Consensus 185 ~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~ 243 (295)
..+.+..++. ++|++++|..... ..+-.+....+.|+. ++-....+
T Consensus 134 ~~~~~~~~~~--~lIlTKlDet~~~----------G~~l~~~~~~~~Pi~-~it~Gq~V 179 (196)
T PF00448_consen 134 LAFYEAFGID--GLILTKLDETARL----------GALLSLAYESGLPIS-YITTGQRV 179 (196)
T ss_dssp HHHHHHSSTC--EEEEESTTSSSTT----------HHHHHHHHHHTSEEE-EEESSSST
T ss_pred HHHhhcccCc--eEEEEeecCCCCc----------ccceeHHHHhCCCeE-EEECCCCh
Confidence 5555444443 7999999842111 346677777777765 45555444
No 96
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.07 E-value=6.1e-09 Score=90.55 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=86.2
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc-cccccCCCccccccCcccccccCCceeeccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (295)
.+++|+|+ +++|+||||++..|+..+.+ .|++|.+|++|++.+-.. .+++-.. .+.... ...+..+.+..
T Consensus 33 ~~~~i~i~-G~~G~GKttl~~~l~~~~~~-~~~~v~~i~~D~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~ 103 (300)
T TIGR00750 33 NAHRVGIT-GTPGAGKSTLLEALGMELRR-RGLKVAVIAVDPSSPFTGGSILGDRT--RMQRLA-----TDPGAFIRSMP 103 (300)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCCcchhhhcccch--hhhhcc-----cCCCceeeecC
Confidence 36888887 88999999999999999999 999999999999874321 1221110 111000 01111111110
Q ss_pred cccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHH
Q 022525 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMF 188 (295)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l 188 (295)
... .. .........+++.+...+||+|||||++ ..... ...+..+|.++++..+.. -.++......+
T Consensus 104 ---~~~-~~----~~~~~~~~~~~~~l~~~g~D~viidT~G-~~~~e--~~i~~~aD~i~vv~~~~~--~~el~~~~~~l 170 (300)
T TIGR00750 104 ---TRG-HL----GGLSQATRELILLLDAAGYDVIIVETVG-VGQSE--VDIANMADTFVVVTIPGT--GDDLQGIKAGL 170 (300)
T ss_pred ---ccc-cc----cchhHHHHHHHHHHHhCCCCEEEEeCCC-Cchhh--hHHHHhhceEEEEecCCc--cHHHHHHHHHH
Confidence 000 00 0012334444444543689999999994 55323 344557788888865543 23333333323
Q ss_pred hcCCCCeeeEEeccccC
Q 022525 189 SKVQVPILGLVENMSCF 205 (295)
Q Consensus 189 ~~~~~~~~~~ViN~~~~ 205 (295)
. +.+. .+|+|+.+.
T Consensus 171 ~--~~~~-ivv~NK~Dl 184 (300)
T TIGR00750 171 M--EIAD-IYVVNKADG 184 (300)
T ss_pred h--hhcc-EEEEEcccc
Confidence 2 2232 489999984
No 97
>PRK14974 cell division protein FtsY; Provisional
Probab=99.07 E-value=5.1e-09 Score=91.60 Aligned_cols=165 Identities=19% Similarity=0.178 Sum_probs=93.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
+.+|.|+ +..|+||||++++||..|.+ .|++|+++++|.........+.. .....++.++..
T Consensus 140 ~~vi~~~-G~~GvGKTTtiakLA~~l~~-~g~~V~li~~Dt~R~~a~eqL~~-------------~a~~lgv~v~~~--- 201 (336)
T PRK14974 140 PVVIVFV-GVNGTGKTTTIAKLAYYLKK-NGFSVVIAAGDTFRAGAIEQLEE-------------HAERLGVKVIKH--- 201 (336)
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcCcHHHHHHHHH-------------HHHHcCCceecc---
Confidence 5677776 69999999999999999999 99999999999764321111100 000111111110
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhh------ccCceEEEeeCCCcchHHHHHHH
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT------LQLSGALIVSTPQDVALIDARKG 184 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l------~~ad~viiv~~~~~~s~~~~~~~ 184 (295)
.. .......+...++.....+||+|||||++........+..| ...|.+++|..+... +++...
T Consensus 202 ---~~-----g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g--~d~~~~ 271 (336)
T PRK14974 202 ---KY-----GADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG--NDAVEQ 271 (336)
T ss_pred ---cC-----CCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc--hhHHHH
Confidence 00 00112333444444333679999999997664222212221 246788888777542 333333
Q ss_pred HHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 185 ITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 185 ~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
.+.+.+ ..++-++|+|+++..... ...-.+....+.|+.
T Consensus 272 a~~f~~-~~~~~giIlTKlD~~~~~----------G~~ls~~~~~~~Pi~ 310 (336)
T PRK14974 272 AREFNE-AVGIDGVILTKVDADAKG----------GAALSIAYVIGKPIL 310 (336)
T ss_pred HHHHHh-cCCCCEEEEeeecCCCCc----------cHHHHHHHHHCcCEE
Confidence 344432 234568999999843211 234455555666665
No 98
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.06 E-value=6.5e-09 Score=87.28 Aligned_cols=150 Identities=23% Similarity=0.277 Sum_probs=97.8
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc-cccccCCCccccccCcccccc-cCCceee
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPIE-NYGVKCM 105 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~-~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ 105 (295)
...+.+|+|+ +-+|+||||+.-.|+..|.+ +|++|.+|--||..|-+- .++|- -..+.... .+++.+-
T Consensus 48 tG~a~viGIT-G~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSSp~TGGsiLGD--------RiRM~~~~~~~~vFiR 117 (323)
T COG1703 48 TGNAHVIGIT-GVPGAGKSTLIEALGRELRE-RGHRVAVLAVDPSSPFTGGSILGD--------RIRMQRLAVDPGVFIR 117 (323)
T ss_pred CCCCcEEEec-CCCCCchHHHHHHHHHHHHH-CCcEEEEEEECCCCCCCCcccccc--------HhhHHhhccCCCeEEe
Confidence 4457899998 78999999999999999999 999999999998765432 23331 11111111 2222222
Q ss_pred ccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHH
Q 022525 106 SMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKG 184 (295)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~ 184 (295)
|. +..-. ---.++....++..+....||+|||.|- |.+.+...+ ...+|.++++..|... .++..+..
T Consensus 118 s~------~srG~--lGGlS~at~~~i~~ldAaG~DvIIVETV-GvGQsev~I--~~~aDt~~~v~~pg~GD~~Q~iK~G 186 (323)
T COG1703 118 SS------PSRGT--LGGLSRATREAIKLLDAAGYDVIIVETV-GVGQSEVDI--ANMADTFLVVMIPGAGDDLQGIKAG 186 (323)
T ss_pred ec------CCCcc--chhhhHHHHHHHHHHHhcCCCEEEEEec-CCCcchhHH--hhhcceEEEEecCCCCcHHHHHHhh
Confidence 21 11100 0013556666666666689999999998 666545544 4478998888888765 46666555
Q ss_pred HHHHhcCCCCeeeEEecccc
Q 022525 185 ITMFSKVQVPILGLVENMSC 204 (295)
Q Consensus 185 ~~~l~~~~~~~~~~ViN~~~ 204 (295)
+-.+... +|+|+.+
T Consensus 187 imEiaDi------~vINKaD 200 (323)
T COG1703 187 IMEIADI------IVINKAD 200 (323)
T ss_pred hhhhhhe------eeEeccC
Confidence 5554432 8999998
No 99
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.06 E-value=1.2e-08 Score=89.99 Aligned_cols=168 Identities=22% Similarity=0.234 Sum_probs=105.2
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC--CCcc-cccccCCCccccccCcccccccCCceeecccc
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG--PSVP-MMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~--~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.|.|.+...|+||||+|..|..+|++ +|.+|--+-.-|.. |+.+ ...|. +. .|++..
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~-rg~~VqpfKvGPDYIDP~~H~~atG~-------------~s--rNLD~~---- 61 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRR-RGLKVQPFKVGPDYIDPGYHTAATGR-------------PS--RNLDSW---- 61 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHh-cCCcccccccCCCccCchhhhHhhCC-------------cc--CCCchh----
Confidence 47888999999999999999999999 99888655444333 1111 00111 11 111111
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc---------chhhhhhccCceEEEeeCCCcc-hHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA---------QLTTTQTLQLSGALIVSTPQDV-ALI 179 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~---------~~~~~~l~~ad~viiv~~~~~~-s~~ 179 (295)
....+.++.++..-. .+.|+.||..--|+-+. ...++.+..+-.|+++-..... ++.
T Consensus 62 ------------mm~~~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~A 128 (451)
T COG1797 62 ------------MMGEEGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVA 128 (451)
T ss_pred ------------hcCHHHHHHHHHHhc-CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHHH
Confidence 112466777777777 88999999877665443 2233444455555555433332 333
Q ss_pred HHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHH-hCCcEEEeecCCcccc
Q 022525 180 DARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAE-MGLKVIGEIPIEMDIR 244 (295)
Q Consensus 180 ~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~Ip~~~~~~ 244 (295)
.+......+. .++++.|+|+|++.. ..+ ....++..+. .|++++++||+++.+.
T Consensus 129 Aiv~G~~~fd-p~v~iaGVIlNrVgs-------erH---~~llr~Ale~~~gv~vlG~lpr~~~l~ 183 (451)
T COG1797 129 AIVKGFKHFD-PDVNIAGVILNRVGS-------ERH---YELLRDALEEYTGVPVLGYLPRDDDLE 183 (451)
T ss_pred HHHHHHHhcC-CCCceEEEEEecCCC-------HHH---HHHHHHHhhhcCCCcEEEEecCCcccC
Confidence 4444444432 567899999999872 211 2456677776 6899999999999864
No 100
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.03 E-value=7.6e-09 Score=90.27 Aligned_cols=148 Identities=17% Similarity=0.081 Sum_probs=89.9
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc-cccccCCCccccccCcccc-cccCCceeecc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVP-IENYGVKCMSM 107 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~ 107 (295)
.+.+|+|+ +..|+||||++..|...+.. .|++|.+|..|++.+... .++|-.. .... ...++..+.+.
T Consensus 55 ~~~~igi~-G~~GaGKSTl~~~l~~~l~~-~g~~v~vi~~Dp~s~~~~gallgd~~--------r~~~~~~~~~~~~r~~ 124 (332)
T PRK09435 55 NALRIGIT-GVPGVGKSTFIEALGMHLIE-QGHKVAVLAVDPSSTRTGGSILGDKT--------RMERLSRHPNAFIRPS 124 (332)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeCCCccccchhhhchHh--------HHHhhcCCCCeEEEec
Confidence 35788886 66999999999999999999 999999999999875321 2222111 0000 01111111111
Q ss_pred ccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeC-CCcchHHHHHH-HH
Q 022525 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVST-PQDVALIDARK-GI 185 (295)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~-~~~~s~~~~~~-~~ 185 (295)
+ .. +.-......+...+..+...+||+|||||++ ...+... ....||.+++|+. +....++.... .+
T Consensus 125 ~------~~--~~l~~~a~~~~~~~~~~~~~g~d~viieT~G-v~qs~~~--i~~~aD~vlvv~~p~~gd~iq~~k~gi~ 193 (332)
T PRK09435 125 P------SS--GTLGGVARKTRETMLLCEAAGYDVILVETVG-VGQSETA--VAGMVDFFLLLQLPGAGDELQGIKKGIM 193 (332)
T ss_pred C------Cc--ccccchHHHHHHHHHHHhccCCCEEEEECCC-CccchhH--HHHhCCEEEEEecCCchHHHHHHHhhhh
Confidence 1 00 0011124556666666654789999999995 4433333 3457999999986 44455555544 22
Q ss_pred HHHhcCCCCeeeEEeccccC
Q 022525 186 TMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 186 ~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.. . .+|+||.|.
T Consensus 194 E~a---D----IiVVNKaDl 206 (332)
T PRK09435 194 ELA---D----LIVINKADG 206 (332)
T ss_pred hhh---h----eEEeehhcc
Confidence 222 1 399999984
No 101
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.00 E-value=2.3e-08 Score=84.93 Aligned_cols=161 Identities=18% Similarity=0.170 Sum_probs=96.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
+.+|++. ++.|+||||+...++..+.. .|.+|.+|++|.+.......+... ....++.+...
T Consensus 75 ~~~i~~~-G~~g~GKTtl~~~l~~~l~~-~~~~v~~i~~D~~ri~~~~ql~~~-------------~~~~~~~~~~~--- 136 (270)
T PRK06731 75 VQTIALI-GPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDY-------------VKTIGFEVIAV--- 136 (270)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHH-------------hhhcCceEEec---
Confidence 4678876 55999999999999999998 899999999997752211111000 00011111100
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhccC-CCccEEEEcCCCCCCccchhhhhh------ccCceEEEeeCCCcchHHHHHH
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGTGDAQLTTTQT------LQLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~yD~iiiD~~~~~~~~~~~~~~l------~~ad~viiv~~~~~~s~~~~~~ 183 (295)
.....+...++.++. ..||+|||||++........+..+ ..-+.+++|.++.. .-.++..
T Consensus 137 ------------~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~-~~~d~~~ 203 (270)
T PRK06731 137 ------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSKDMIE 203 (270)
T ss_pred ------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc-CHHHHHH
Confidence 012345555555541 479999999998764222111111 23456777776654 3445556
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
.++.+.. .++-++|++++|..... ..+-.+....+.|+.
T Consensus 204 ~~~~f~~--~~~~~~I~TKlDet~~~----------G~~l~~~~~~~~Pi~ 242 (270)
T PRK06731 204 IITNFKD--IHIDGIVFTKFDETASS----------GELLKIPAVSSAPIV 242 (270)
T ss_pred HHHHhCC--CCCCEEEEEeecCCCCc----------cHHHHHHHHHCcCEE
Confidence 6666654 56678999999943211 345666666676654
No 102
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=98.99 E-value=4.3e-09 Score=90.71 Aligned_cols=73 Identities=10% Similarity=0.167 Sum_probs=49.3
Q ss_pred eEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCC--CCccccCCchhhHHHHHhCCcEEEeec
Q 022525 166 GALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCS--EPSFIFGKGGTHRTAAEMGLKVIGEIP 238 (295)
Q Consensus 166 ~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~Ip 238 (295)
.+++|+.|+..++.++.+.++.++..+.+..++|+|++......+. ......++..++++.+.++...+..+|
T Consensus 191 ~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~~~~~~~~~~~r~~~q~~~L~~i~~~~~~~~~~~vp 265 (284)
T TIGR00345 191 SFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPENAQDEFCQARWELQQKYLKEIPEKFADLPVAEVP 265 (284)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEec
Confidence 4899999999999999999999999999999999999875311100 000111223355666666443344555
No 103
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.98 E-value=2.3e-08 Score=89.11 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=93.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHh---CCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~---~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (295)
+++|+++ ++.|+||||+++.||..+... .|++|.+|++|++.......+..- .+ ..++++..
T Consensus 174 ~~vi~lv-GptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~-----a~--------~lgvpv~~- 238 (388)
T PRK12723 174 KRVFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTY-----GD--------IMGIPVKA- 238 (388)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHH-----hh--------cCCcceEe-
Confidence 4666665 667999999999999998841 479999999998764432211110 00 01111100
Q ss_pred ccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhh----hhc--cCc-eEEEeeCCCcchHHH
Q 022525 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT----QTL--QLS-GALIVSTPQDVALID 180 (295)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~----~l~--~ad-~viiv~~~~~~s~~~ 180 (295)
......+...+..+ ..||+|||||++........+. .+. ..+ .+++|.++... ..+
T Consensus 239 --------------~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~ 301 (388)
T PRK12723 239 --------------IESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TSD 301 (388)
T ss_pred --------------eCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHH
Confidence 00124456656555 5799999999976543221111 111 123 57777777664 444
Q ss_pred HHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 181 ARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
+......+.. .++-++|+++.|..... ..+-.+....+.|+.
T Consensus 302 ~~~~~~~~~~--~~~~~~I~TKlDet~~~----------G~~l~~~~~~~~Pi~ 343 (388)
T PRK12723 302 VKEIFHQFSP--FSYKTVIFTKLDETTCV----------GNLISLIYEMRKEVS 343 (388)
T ss_pred HHHHHHHhcC--CCCCEEEEEeccCCCcc----------hHHHHHHHHHCCCEE
Confidence 5555555443 35568999999843221 346666666666654
No 104
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.89 E-value=3.3e-09 Score=87.88 Aligned_cols=146 Identities=24% Similarity=0.313 Sum_probs=87.2
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc-cccccCCCccccccCccccc-ccCCceeecc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPI-ENYGVKCMSM 107 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~-~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~ 107 (295)
...+|+|+ +.+|+||||+.-.|+..+.+ .|++|.++-.||..|-.- .++| |...+... .++++.+-|.
T Consensus 28 ~a~~iGiT-G~PGaGKSTli~~l~~~~~~-~g~~VaVlAVDPSSp~tGGAlLG--------DRiRM~~~~~d~~vfIRS~ 97 (266)
T PF03308_consen 28 RAHVIGIT-GPPGAGKSTLIDALIRELRE-RGKRVAVLAVDPSSPFTGGALLG--------DRIRMQELSRDPGVFIRSM 97 (266)
T ss_dssp -SEEEEEE-E-TTSSHHHHHHHHHHHHHH-TT--EEEEEE-GGGGCC---SS----------GGGCHHHHTSTTEEEEEE
T ss_pred CceEEEee-CCCCCcHHHHHHHHHHHHhh-cCCceEEEEECCCCCCCCCcccc--------cHHHhcCcCCCCCEEEeec
Confidence 36899996 78999999999999999999 999999999999765432 3333 22222221 2334433332
Q ss_pred ccccCCCCCCccCCc--hHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHH
Q 022525 108 GFLVPSSSPVVWRGP--MVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKG 184 (295)
Q Consensus 108 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~ 184 (295)
.. ++. -.+......+..+....||+|||.|- |.+.+...+ ...+|.++++..|... .++..+..
T Consensus 98 at----------RG~lGGls~~t~~~v~ll~aaG~D~IiiETV-GvGQsE~~I--~~~aD~~v~v~~Pg~GD~iQ~~KaG 164 (266)
T PF03308_consen 98 AT----------RGSLGGLSRATRDAVRLLDAAGFDVIIIETV-GVGQSEVDI--ADMADTVVLVLVPGLGDEIQAIKAG 164 (266)
T ss_dssp -------------SSHHHHHHHHHHHHHHHHHTT-SEEEEEEE-SSSTHHHHH--HTTSSEEEEEEESSTCCCCCTB-TT
T ss_pred Cc----------CCCCCCccHhHHHHHHHHHHcCCCEEEEeCC-CCCccHHHH--HHhcCeEEEEecCCCccHHHHHhhh
Confidence 10 111 12445555555555478999999998 677545544 4479999999888765 45555544
Q ss_pred HHHHhcCCCCeeeEEecccc
Q 022525 185 ITMFSKVQVPILGLVENMSC 204 (295)
Q Consensus 185 ~~~l~~~~~~~~~~ViN~~~ 204 (295)
+-.+.. .+|+|+.+
T Consensus 165 imEiaD------i~vVNKaD 178 (266)
T PF03308_consen 165 IMEIAD------IFVVNKAD 178 (266)
T ss_dssp HHHH-S------EEEEE--S
T ss_pred hhhhcc------EEEEeCCC
Confidence 444432 38999988
No 105
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.88 E-value=4.7e-09 Score=90.32 Aligned_cols=42 Identities=38% Similarity=0.475 Sum_probs=37.1
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhC-C-CeEEEEEeCCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKC-Q-LKVGLLDADVYG 73 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~-g-~~VlliD~D~~~ 73 (295)
.+++|+|++ .+|+||||+++.||..++. . | ++|.+|++|++.
T Consensus 193 ~~~vi~~vG-ptGvGKTTt~~kLa~~~~~-~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVG-PTGVGKTTTLAKLAARFVL-EHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEEC-CCCCCHHHHHHHHHHHHHH-HcCCCeEEEEECCccc
Confidence 467898885 5899999999999999998 6 5 999999999876
No 106
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.85 E-value=3.4e-07 Score=83.68 Aligned_cols=186 Identities=16% Similarity=0.089 Sum_probs=101.4
Q ss_pred ccccccccCCCcc-ccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccccc
Q 022525 13 GVRYYAAFGSKDL-KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD 91 (295)
Q Consensus 13 ~l~~~~~~~~~~~-~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~ 91 (295)
+++..+....--. +....++.|.|++...|+||||+|+.|+.+|++ + |..+-+.+.. .|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~-~---v~~fK~GpD~---------------id- 278 (476)
T PRK06278 219 KLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLRG-K---VFVAKIGPDV---------------RD- 278 (476)
T ss_pred HHHHHhcccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHh-C---eEEEcCCCCh---------------hh-
Confidence 4444444333222 233347789999999999999999999999999 5 6555432211 00
Q ss_pred CcccccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch---------hhhhhc
Q 022525 92 MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL---------TTTQTL 162 (295)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~---------~~~~l~ 162 (295)
..|.- ..+. .+.....+...... ......+.+.. ++...+|++||....|+.+... .++...
T Consensus 279 --~~p~~-~~~~-~~~sp~~a~n~~~d-~~~~~~~~~~~----~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l 349 (476)
T PRK06278 279 --IVPSL-YLLR-EKMTKYNSIKIGDR-GWSDVEEFLEF----VKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKAL 349 (476)
T ss_pred --cCCcc-eecc-cccCChHHHhhcCC-cccCHHHHHHH----HHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHh
Confidence 00000 0000 00000000000000 00111222222 2214689999999987765321 222222
Q ss_pred cCceEEEeeCCCcchHHHHHH----HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeec
Q 022525 163 QLSGALIVSTPQDVALIDARK----GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIP 238 (295)
Q Consensus 163 ~ad~viiv~~~~~~s~~~~~~----~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip 238 (295)
.+ -+|+|+.....++..+.. ..+.++..+.++.|+|+|++... . .....+++.+..|+++++++|
T Consensus 350 ~~-PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~-------~---~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 350 GF-PVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNM-------E---IFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred CC-CEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcH-------H---HHHHHHHHHHhcCCCEEEecc
Confidence 23 356666666666444433 45566667889999999999721 1 124467777778999999944
No 107
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.82 E-value=1.4e-07 Score=89.96 Aligned_cols=162 Identities=18% Similarity=0.148 Sum_probs=95.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g-~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
+++|+|+ +..|+||||+...||..+....| ++|.+|++|.+......-+.. + ....++++..
T Consensus 185 g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~-----~--------a~~~gvpv~~--- 247 (767)
T PRK14723 185 GGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRI-----Y--------GRILGVPVHA--- 247 (767)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHH-----H--------HHhCCCCccc---
Confidence 5788887 78899999999999998864266 699999999765332111100 0 0001111100
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhh------hccCceEEEeeCCCcchHHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ------TLQLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~------l~~ad~viiv~~~~~~s~~~~~~ 183 (295)
.. ....+...++.+ ..||+|||||++........... ...-+.+++|++... ....+..
T Consensus 248 ---------~~---~~~~l~~al~~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~l~~ 312 (767)
T PRK14723 248 ---------VK---DAADLRFALAAL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDTLNE 312 (767)
T ss_pred ---------cC---CHHHHHHHHHHh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC-cHHHHHH
Confidence 00 134567777766 57899999999743321111111 112356777777664 3455566
Q ss_pred HHHHHhcC-CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 184 GITMFSKV-QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 184 ~~~~l~~~-~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
.++.+... +.++-++|++|+|..... ..+-.+....+.|+.
T Consensus 313 i~~~f~~~~~~~i~glIlTKLDEt~~~----------G~iL~i~~~~~lPI~ 354 (767)
T PRK14723 313 VVHAYRHGAGEDVDGCIITKLDEATHL----------GPALDTVIRHRLPVH 354 (767)
T ss_pred HHHHHhhcccCCCCEEEEeccCCCCCc----------cHHHHHHHHHCCCeE
Confidence 66666543 346779999999843221 335566666665543
No 108
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.74 E-value=1.8e-07 Score=82.82 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=88.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g-~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
+.+|+++ +..|+||||++..||..+....| .+|.+|.+|.........+. .+. ...++.+..
T Consensus 137 g~ii~lv-GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~-----~~a--------~~~gv~~~~--- 199 (374)
T PRK14722 137 GGVFALM-GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLR-----IFG--------KILGVPVHA--- 199 (374)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHH-----HHH--------HHcCCceEe---
Confidence 5677765 88999999999999998875257 69999999987532111110 000 000111100
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch---hhhhhcc---CceEEEeeCCCcchHHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL---TTTQTLQ---LSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~---~~~~l~~---ad~viiv~~~~~~s~~~~~~ 183 (295)
.. ....+...+..+ .++|+|+|||++....... .+..+.. ...+++|+.+.. ....+..
T Consensus 200 ---~~---------~~~~l~~~l~~l--~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts-~~~~l~e 264 (374)
T PRK14722 200 ---VK---------DGGDLQLALAEL--RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS-HGDTLNE 264 (374)
T ss_pred ---cC---------CcccHHHHHHHh--cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc-ChHHHHH
Confidence 00 012234455555 5789999999954321111 1122222 244566666654 3344444
Q ss_pred HHHHHhcCC-------CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 184 GITMFSKVQ-------VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 184 ~~~~l~~~~-------~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
.+..+.... .++-++|+++.|.... + ..+-.+....+.|+.
T Consensus 265 vi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~--------~--G~~l~~~~~~~lPi~ 312 (374)
T PRK14722 265 VVQAYRSAAGQPKAALPDLAGCILTKLDEASN--------L--GGVLDTVIRYKLPVH 312 (374)
T ss_pred HHHHHHHhhcccccccCCCCEEEEeccccCCC--------c--cHHHHHHHHHCcCeE
Confidence 444444321 2366899999984321 1 335566666666654
No 109
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.64 E-value=1.3e-06 Score=79.05 Aligned_cols=170 Identities=16% Similarity=0.182 Sum_probs=99.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
|+.|.|.+...|+||||++..|+.+|.+ +|.+|-.+-..+..-... +.. ...-.+. .+++.
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~-~g~~v~~~K~Gpd~iD~~-~~~---------~~~g~~~--~nld~------ 61 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALED-AGYAVQPAKAGPDFIDPS-HHE---------AVAGRPS--RTLDP------ 61 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHH-CCCeeEEEeeCCCCCCHH-HHH---------HHhCCCc--ccCCh------
Confidence 3568999999999999999999999999 999998776544321100 000 0000000 11110
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccc----hhhhhhccCceEEEeeCCCcc--hHHHHHHH
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ----LTTTQTLQLSGALIVSTPQDV--ALIDARKG 184 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~----~~~~~l~~ad~viiv~~~~~~--s~~~~~~~ 184 (295)
.. ...+.+...+. + ..+|++||....|+-+.. ..+.....+. +|+|+..... +...+...
T Consensus 62 -----~~-----~~~~~i~~~~~--~-~~~d~~vIEG~gGl~dg~~~s~adla~~l~~P-viLVv~~~~g~~s~aa~l~g 127 (433)
T PRK13896 62 -----WL-----SGEDGMRRNYY--R-GEGDICVVEGVMGLYDGDVSSTAMVAEALDLP-VVLVVDAKAGMESVAATALG 127 (433)
T ss_pred -----hh-----CCHHHHHHHHH--h-hcCCEEEEECCCccccCCCCCHHHHHHHHCCC-EEEEEcCcccHHHHHHHHHH
Confidence 00 01233444443 2 459999999998875432 1122222233 5666666555 34444555
Q ss_pred HHHHhc---CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcccc
Q 022525 185 ITMFSK---VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIR 244 (295)
Q Consensus 185 ~~~l~~---~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~ 244 (295)
+..+.. .++++.|+|+|++.. ..+ ...+++.... ++++++.||+++.+.
T Consensus 128 ~~~~~~~~~~~~~i~GvIlN~~~~-------~~h---~~~l~~~~~~-~i~vlG~lP~~~~~~ 179 (433)
T PRK13896 128 FRAYADRIGRDIDVAGVIAQRAHG-------GRH---ADGIRDALPD-ELTYFGRIPPRDDLE 179 (433)
T ss_pred HHHHHHhccCCCcEEEEEEECCCc-------HHH---HHHHHHhhhh-cCceeEecccCCCCC
Confidence 433333 478999999999863 110 1223344444 789999999988864
No 110
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.64 E-value=3.5e-07 Score=80.60 Aligned_cols=140 Identities=24% Similarity=0.260 Sum_probs=86.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la-~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.++|+++ +.-||||||+.+-||+.+. ....++|.+|-+|..--....-+. ... ...++++.
T Consensus 203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk-----~Ya--------~im~vp~~---- 264 (407)
T COG1419 203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLK-----TYA--------DIMGVPLE---- 264 (407)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHH-----HHH--------HHhCCceE----
Confidence 6888887 6779999999999999999 315679999999975422111010 000 00111110
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhc------cCceEEEeeCCCcchHHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL------QLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~------~ad~viiv~~~~~~s~~~~~~ 183 (295)
-....+.+...+..+ .++|+|+|||.+.-.-+...+..|. ....+.+|.+.+. ...++..
T Consensus 265 -----------vv~~~~el~~ai~~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~dlke 330 (407)
T COG1419 265 -----------VVYSPKELAEAIEAL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT-KYEDLKE 330 (407)
T ss_pred -----------EecCHHHHHHHHHHh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc-chHHHHH
Confidence 001246777777777 5789999999954322222222211 2344555555544 4677777
Q ss_pred HHHHHhcCCCCeeeEEecccc
Q 022525 184 GITMFSKVQVPILGLVENMSC 204 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~ 204 (295)
.++.+... ++-++|+++.|
T Consensus 331 i~~~f~~~--~i~~~I~TKlD 349 (407)
T COG1419 331 IIKQFSLF--PIDGLIFTKLD 349 (407)
T ss_pred HHHHhccC--CcceeEEEccc
Confidence 77777655 55579999998
No 111
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.62 E-value=2.5e-07 Score=76.71 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=93.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccccc
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (295)
+++.++-+-.|.||||+...|-..+.. .+.+.-+|.+||..-++..-.+++-...+..-..+ ..++ +-|.|...
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~-~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvM---kqY~--LGPNGgI~ 92 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHA-KKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVM---KQYQ--LGPNGGIV 92 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhh-ccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHH---HHhC--CCCCcchh
Confidence 344444488899999999999999999 89999999999988666554444322221110000 0001 11111111
Q ss_pred CCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhh------hccC-c-eE-EEeeCCCcch----H
Q 022525 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ------TLQL-S-GA-LIVSTPQDVA----L 178 (295)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~------l~~a-d-~v-iiv~~~~~~s----~ 178 (295)
.+-.- -....+.+-.+++... +.+||||||||+.+....|.... +..+ + .+ .+|-++...+ +
T Consensus 93 TsLNL----F~tk~dqv~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM 167 (366)
T KOG1532|consen 93 TSLNL----FATKFDQVIELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM 167 (366)
T ss_pred hhHHH----HHHHHHHHHHHHHHhh-cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH
Confidence 11100 0011234446666666 88999999999876544443222 1111 2 22 2333333222 5
Q ss_pred HHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 179 IDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.++...+..+-+..+|++ +++|+.+.
T Consensus 168 SNMlYAcSilyktklp~i-vvfNK~Dv 193 (366)
T KOG1532|consen 168 SNMLYACSILYKTKLPFI-VVFNKTDV 193 (366)
T ss_pred HHHHHHHHHHHhccCCeE-EEEecccc
Confidence 677777778888888887 99999884
No 112
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.57 E-value=3.4e-07 Score=78.43 Aligned_cols=164 Identities=21% Similarity=0.146 Sum_probs=97.1
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.+.||.|+ +--|+||||+..-||+.|-+ .|++|++.-+|..-...-.-+ -....+.++.++...
T Consensus 138 ~p~Vil~v-GVNG~GKTTTIaKLA~~l~~-~g~~VllaA~DTFRAaAiEQL-------------~~w~er~gv~vI~~~- 201 (340)
T COG0552 138 KPFVILFV-GVNGVGKTTTIAKLAKYLKQ-QGKSVLLAAGDTFRAAAIEQL-------------EVWGERLGVPVISGK- 201 (340)
T ss_pred CcEEEEEE-ecCCCchHhHHHHHHHHHHH-CCCeEEEEecchHHHHHHHHH-------------HHHHHHhCCeEEccC-
Confidence 36777776 77899999999999999999 999999998887542211001 011223444444321
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhcc------------CceEEEeeCCCc--
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQ------------LSGALIVSTPQD-- 175 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~------------ad~viiv~~~~~-- 175 (295)
.+........+.++..+..+||+|||||++.+....-.+..|.- -+.++++.....
T Consensus 202 ----------~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 202 ----------EGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred ----------CCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 01112334555555555589999999999988653222222221 122555544433
Q ss_pred chHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 176 VALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 176 ~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
.++..+..+-+. .++-|+|+++.+..... ..+-.+...+++|+.
T Consensus 272 nal~QAk~F~ea-----v~l~GiIlTKlDgtAKG----------G~il~I~~~l~~PI~ 315 (340)
T COG0552 272 NALSQAKIFNEA-----VGLDGIILTKLDGTAKG----------GIILSIAYELGIPIK 315 (340)
T ss_pred hHHHHHHHHHHh-----cCCceEEEEecccCCCc----------ceeeeHHHHhCCCEE
Confidence 233333333222 34668999999843222 346667777777765
No 113
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.53 E-value=1.5e-06 Score=79.42 Aligned_cols=160 Identities=19% Similarity=0.167 Sum_probs=85.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g-~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
+.+|+|+ +--|+||||++..||..+....| ++|.+|++|++......-+. .+. ...++.+.
T Consensus 256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr-----~~A--------eilGVpv~---- 317 (484)
T PRK06995 256 GGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLR-----IYG--------KILGVPVH---- 317 (484)
T ss_pred CcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHH-----HHH--------HHhCCCee----
Confidence 5788887 67899999999999999864256 59999999986422110000 000 00011000
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccc---hhhhhhccC---ceEEEeeCCCcchHHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ---LTTTQTLQL---SGALIVSTPQDVALIDARK 183 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~---~~~~~l~~a---d~viiv~~~~~~s~~~~~~ 183 (295)
.... ...+...+..+ .++|+++|||++...... .....+... ...++++.... ....+..
T Consensus 318 --~~~~---------~~Dl~~aL~~L--~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~-~~~~l~~ 383 (484)
T PRK06995 318 --AVKD---------AADLRLALSEL--RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS-HGDTLNE 383 (484)
T ss_pred --ccCC---------chhHHHHHHhc--cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC-cHHHHHH
Confidence 0000 01122233344 578999999975332111 011111111 22455554443 3355555
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
.++.+... .+-++|+|+.+..... ..+-.+...+++++.
T Consensus 384 i~~~f~~~--~~~g~IlTKlDet~~~----------G~~l~i~~~~~lPI~ 422 (484)
T PRK06995 384 VVQAYRGP--GLAGCILTKLDEAASL----------GGALDVVIRYKLPLH 422 (484)
T ss_pred HHHHhccC--CCCEEEEeCCCCcccc----------hHHHHHHHHHCCCeE
Confidence 66665544 4568999999843221 346666667676654
No 114
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=2.1e-06 Score=74.61 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=88.4
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecc
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (295)
...+.||.|+ +--|+||||++..||+++.+ +|+||++|=+|.......--+.... ....+++...
T Consensus 98 K~kpsVimfV-GLqG~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRagAfDQLkqnA-------------~k~~iP~ygs 162 (483)
T KOG0780|consen 98 KGKPSVIMFV-GLQGSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAGAFDQLKQNA-------------TKARVPFYGS 162 (483)
T ss_pred cCCCcEEEEE-eccCCCcceeHHHHHHHHHh-cCCceeEEeecccccchHHHHHHHh-------------HhhCCeeEec
Confidence 3345777776 66788999999999999999 9999999999876643211111000 0111111111
Q ss_pred ccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccc------hhhhhhccCceEEEeeCCCcchHHHH
Q 022525 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ------LTTTQTLQLSGALIVSTPQDVALIDA 181 (295)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~------~~~~~l~~ad~viiv~~~~~~s~~~~ 181 (295)
.. +....+....-++..+.+.||+||+||.+...... ........=|.+|.|.+.+..- .+
T Consensus 163 ------yt-----e~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ--aa 229 (483)
T KOG0780|consen 163 ------YT-----EADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ--AA 229 (483)
T ss_pred ------cc-----ccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH--hH
Confidence 00 11112334444444444899999999997654321 1122222348888888776532 22
Q ss_pred HHHHHHHhcCCCCeeeEEeccccCCCCC
Q 022525 182 RKGITMFSKVQVPILGLVENMSCFICPH 209 (295)
Q Consensus 182 ~~~~~~l~~~~~~~~~~ViN~~~~~~~~ 209 (295)
....+.+. ....+-++|+++.+.+...
T Consensus 230 e~Qa~aFk-~~vdvg~vIlTKlDGhakG 256 (483)
T KOG0780|consen 230 EAQARAFK-ETVDVGAVILTKLDGHAKG 256 (483)
T ss_pred HHHHHHHH-HhhccceEEEEecccCCCC
Confidence 22222222 2345567999999966443
No 115
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.42 E-value=3.8e-06 Score=71.98 Aligned_cols=95 Identities=17% Similarity=0.087 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..+++.|+|||+..+........+..+|.+++|+.+.......+...++.+...+.+.+ +++|+.+.... .
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~~~~-------~- 132 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDRERA-------D- 132 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCccCCC-------C-
Confidence 67899999999765432334566778999999999888766677777788877787776 79999995321 1
Q ss_pred CCchhhHHHHHhCCcEEE-eecCCc
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIPIEM 241 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip~~~ 241 (295)
......++.+.++.+++. .+|...
T Consensus 133 ~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 133 FDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHHHHhCCCeEEEEecccC
Confidence 123467777788877664 777544
No 116
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=2.1e-06 Score=76.46 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=98.7
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecc
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (295)
.+.+-+|.|+ +--||||||.-+-+|+.|-+ .+.+|++.-||+.....-.-++.. +..........+.+...
T Consensus 375 ~krPYVi~fv-GVNGVGKSTNLAKIayWLlq-NkfrVLIAACDTFRsGAvEQLrtH-------v~rl~~l~~~~v~lfek 445 (587)
T KOG0781|consen 375 RKRPYVISFV-GVNGVGKSTNLAKIAYWLLQ-NKFRVLIAACDTFRSGAVEQLRTH-------VERLSALHGTMVELFEK 445 (587)
T ss_pred cCCCeEEEEE-eecCccccchHHHHHHHHHh-CCceEEEEeccchhhhHHHHHHHH-------HHHHHHhccchhHHHhh
Confidence 3357888886 77899999999999999999 999999999998764321111110 00000000011111111
Q ss_pred ccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhh------hccCceEEEeeCCC--cchHH
Q 022525 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ------TLQLSGALIVSTPQ--DVALI 179 (295)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~------l~~ad~viiv~~~~--~~s~~ 179 (295)
| .+.......+..++..+...||+|+|||++.+.+..-.+.. +..-|.++.|-.+- ..+++
T Consensus 446 G-----------Ygkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~ 514 (587)
T KOG0781|consen 446 G-----------YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVD 514 (587)
T ss_pred h-----------cCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHH
Confidence 1 12223455667777776689999999999887654321221 22347777776553 34677
Q ss_pred HHHHHHHHHhcCCC--CeeeEEecccc
Q 022525 180 DARKGITMFSKVQV--PILGLVENMSC 204 (295)
Q Consensus 180 ~~~~~~~~l~~~~~--~~~~~ViN~~~ 204 (295)
.+.++-+.+..... .+-|+|+++++
T Consensus 515 q~~~fn~al~~~~~~r~id~~~ltk~d 541 (587)
T KOG0781|consen 515 QLKKFNRALADHSTPRLIDGILLTKFD 541 (587)
T ss_pred HHHHHHHHHhcCCCccccceEEEEecc
Confidence 77777777765432 36789999998
No 117
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=98.37 E-value=1.7e-06 Score=77.83 Aligned_cols=200 Identities=16% Similarity=0.186 Sum_probs=116.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccccc-------Cccc---------
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-------MKMV--------- 95 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~-------~~~~--------- 95 (295)
+.|.+.+.-..+|||++++.|+..+++ +|++|. -+-.|+.++..+.-.+. ..+... ....
T Consensus 2 ~~iMv~GT~S~~GKS~~~aglcRi~~~-~G~~V~--PFK~QNMsLNs~it~~G-~EIgraQ~~QA~Aa~i~p~v~mNPvL 77 (486)
T COG1492 2 KAIMVQGTTSDAGKSFLVAGLCRILAR-RGYRVA--PFKSQNMSLNSAITPGG-GEIGRAQALQALAAGIEPSVHMNPVL 77 (486)
T ss_pred CccEEEeccCCcchhhhhhhhhHHHHh-cCCccC--CCchhhcccccEECCCC-cEEehhhhHHHHHcCCCCccccCCEE
Confidence 467788888899999999999999999 999996 55777777655442221 111000 1111
Q ss_pred --ccccCCceeeccccccCCCCCCc-c--CCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch------hhhhhccC
Q 022525 96 --PIENYGVKCMSMGFLVPSSSPVV-W--RGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL------TTTQTLQL 164 (295)
Q Consensus 96 --~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~------~~~~l~~a 164 (295)
|..+...+++-.|.......... + .-......+...++.+. ..||+|++...++....++ ++.....+
T Consensus 78 LKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~ 156 (486)
T COG1492 78 LKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEINLRDRDIANMGVAEIA 156 (486)
T ss_pred EeecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhcCcccccccceeeehhc
Confidence 23333444444333222222211 1 11134556777777788 9999999999865432211 11111123
Q ss_pred c-eEEEeeCCCc-chHHHHHHHHHHHhc-CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCc
Q 022525 165 S-GALIVSTPQD-VALIDARKGITMFSK-VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEM 241 (295)
Q Consensus 165 d-~viiv~~~~~-~s~~~~~~~~~~l~~-~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~ 241 (295)
| -+|+|..=+. ..+..+..++..+.. ....+.|+|+|++... ...+ ..-++.+.+..|.++++++|+..
T Consensus 157 dapvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd-------~~ll-~~gik~Le~~tg~~vlGv~P~~~ 228 (486)
T COG1492 157 DAPVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGD-------ESLL-DPGLKWLEELTGVPVLGVLPYLK 228 (486)
T ss_pred CCCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCC-------HHHH-hhHHHHHHHhhCCeeEeeccccc
Confidence 2 2455544443 234444444444433 2345679999999732 1111 24477888889999999999887
Q ss_pred ccc
Q 022525 242 DIR 244 (295)
Q Consensus 242 ~~~ 244 (295)
...
T Consensus 229 ~~~ 231 (486)
T COG1492 229 DAL 231 (486)
T ss_pred ccc
Confidence 654
No 118
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.26 E-value=4.4e-07 Score=76.06 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=28.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc
Q 022525 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77 (295)
Q Consensus 39 ~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~ 77 (295)
+..|+||||.+.++...+.. .|++|.+|.+||....+.
T Consensus 3 GpaGSGKTT~~~~~~~~~~~-~~~~~~~vNLDPa~~~~~ 40 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLES-NGRDVYIVNLDPAVENLP 40 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTT-T-S-EEEEE--TT-S--S
T ss_pred CCCCCCHHHHHHHHHHHHHh-ccCCceEEEcchHhcccc
Confidence 56799999999999999999 999999999999875543
No 119
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.21 E-value=1.4e-05 Score=68.29 Aligned_cols=93 Identities=16% Similarity=0.071 Sum_probs=61.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..+.+.++|||+..+........+..+|.+++|+.....--......++.+...+.+++ +++|+.+.... .
T Consensus 69 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~i-ivvNK~D~~~a-------~- 139 (267)
T cd04169 69 RDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII-TFINKLDREGR-------D- 139 (267)
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEE-EEEECCccCCC-------C-
Confidence 67889999999754322224455678999999988765433445566666666777765 89999983211 1
Q ss_pred CCchhhHHHHHhCCcEEE-eecC
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIPI 239 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip~ 239 (295)
.....+++.+.++.+++. .+|-
T Consensus 140 ~~~~~~~l~~~l~~~~~~~~~Pi 162 (267)
T cd04169 140 PLELLDEIEEELGIDCTPLTWPI 162 (267)
T ss_pred HHHHHHHHHHHHCCCceeEEecc
Confidence 113367888888887665 6663
No 120
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.14 E-value=1.5e-05 Score=66.85 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=66.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..+.+.++|||+...........+..+|.+++|+.....-.......++.+.+.+.+.+ +++|+.+.... .+
T Consensus 62 ~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~~a-------~~ 133 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDRAGA-------DL 133 (237)
T ss_pred CCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccccCC-------CH
Confidence 56889999999655433344566778999999988776545566677777777788876 89999984311 11
Q ss_pred CCchhhHHHHHhCCcEEE-eec
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIP 238 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip 238 (295)
....+++.+.++..++. .+|
T Consensus 134 -~~~~~~i~~~~~~~~~~~~~p 154 (237)
T cd04168 134 -EKVYQEIKEKLSSDIVPMQKV 154 (237)
T ss_pred -HHHHHHHHHHHCCCeEEEECC
Confidence 35688899999887765 566
No 121
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=98.09 E-value=6.5e-06 Score=74.42 Aligned_cols=53 Identities=28% Similarity=0.244 Sum_probs=48.4
Q ss_pred CCeEEEEeeCCC---CCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCc
Q 022525 30 VKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (295)
Q Consensus 30 ~~~vI~i~s~kG---GvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~ 86 (295)
.+|+|.|+|... |.||||++.+||..|++ .|+||+++ ...|++...||.+...
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~-~Gkk~l~~---LR~PSlg~~fg~kgga 92 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNA-HGKKAIAC---LREPSLGPTFGIKGGA 92 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHH-hCCcEEEE---EecCCcCcccCCCCCC
Confidence 379999999888 99999999999999999 99999988 7789999999988765
No 122
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.06 E-value=2.9e-05 Score=66.42 Aligned_cols=94 Identities=15% Similarity=0.040 Sum_probs=64.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..+.+.++|||+...........+..+|.+++|+.....-.......++.+...+.+.+ +++|+.+.... .
T Consensus 62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~a-------~- 132 (270)
T cd01886 62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRTGA-------D- 132 (270)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCC-------C-
Confidence 56889999999754433334566778999999988876555566778888888888876 89999994311 0
Q ss_pred CCchhhHHHHHhCCcEE-EeecCC
Q 022525 218 GKGGTHRTAAEMGLKVI-GEIPIE 240 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~-~~Ip~~ 240 (295)
.....+++.+.++.... ..+|-+
T Consensus 133 ~~~~~~~l~~~l~~~~~~~~~Pis 156 (270)
T cd01886 133 FFRVVEQIREKLGANPVPLQLPIG 156 (270)
T ss_pred HHHHHHHHHHHhCCCceEEEeccc
Confidence 11346777777776544 366744
No 123
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.98 E-value=6.2e-05 Score=66.35 Aligned_cols=43 Identities=37% Similarity=0.408 Sum_probs=36.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCc
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~ 76 (295)
.+++++ +--++||||+++-||-.+-+ +|++|.+||+|..++.+
T Consensus 74 ~~vmvv-G~vDSGKSTLt~~LaN~~l~-rG~~v~iiDaDvGQ~ei 116 (398)
T COG1341 74 GVVMVV-GPVDSGKSTLTTYLANKLLA-RGRKVAIIDADVGQSEI 116 (398)
T ss_pred cEEEEE-CCcCcCHHHHHHHHHHHHhh-cCceEEEEeCCCCCccc
Confidence 456665 45579999999999999999 99999999999988664
No 124
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=0.0004 Score=62.74 Aligned_cols=160 Identities=21% Similarity=0.156 Sum_probs=88.2
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g-~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (295)
.+.+|+++ +.-|+||||+..-||..+....| .+|.+|-+|...... .+....+ ....++.+..
T Consensus 190 ~g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~riga-----lEQL~~~--------a~ilGvp~~~-- 253 (420)
T PRK14721 190 QGGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGG-----HEQLRIY--------GKLLGVSVRS-- 253 (420)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhH-----HHHHHHH--------HHHcCCceec--
Confidence 46788886 88899999999999986654144 688888777643211 1000000 0001111100
Q ss_pred cccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccc----hhhhhhcc---CceEEEeeCCCcchHHHH
Q 022525 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ----LTTTQTLQ---LSGALIVSTPQDVALIDA 181 (295)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~----~~~~~l~~---ad~viiv~~~~~~s~~~~ 181 (295)
. .....+...+..+ .++|+|+|||+ |..... -.+..+.. ...+++|+.+.. ....+
T Consensus 254 ----v---------~~~~dl~~al~~l--~~~d~VLIDTa-Grsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~-~~~~~ 316 (420)
T PRK14721 254 ----I---------KDIADLQLMLHEL--RGKHMVLIDTV-GMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS-SGDTL 316 (420)
T ss_pred ----C---------CCHHHHHHHHHHh--cCCCEEEecCC-CCCcchHHHHHHHHHHhccCCCceEEEEEcCCC-CHHHH
Confidence 0 0022344445555 67999999997 554311 11112222 235666665553 34555
Q ss_pred HHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 182 RKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 182 ~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
...+..+.. .++-++|+++.|..... ..+-.+....+.++.
T Consensus 317 ~~~~~~f~~--~~~~~~I~TKlDEt~~~----------G~~l~~~~~~~lPi~ 357 (420)
T PRK14721 317 DEVISAYQG--HGIHGCIITKVDEAASL----------GIALDAVIRRKLVLH 357 (420)
T ss_pred HHHHHHhcC--CCCCEEEEEeeeCCCCc----------cHHHHHHHHhCCCEE
Confidence 566666554 45668999999843221 346666666666654
No 125
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.97 E-value=1.5e-05 Score=72.79 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=49.1
Q ss_pred CCeEEEEeeCCC---CCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCc
Q 022525 30 VKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (295)
Q Consensus 30 ~~~vI~i~s~kG---GvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~ 86 (295)
.+|+|.|+|.-. |.||||++.+||..|++ .|++| ||+ ...|++...||.+...
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~-~Gk~~--i~~-LR~Pslg~~fg~kgga 108 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNA-LGQKV--CAC-IRQPSMGPVFGVKGGA 108 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHH-hCCce--EEE-eccCCcCCccCCCCCC
Confidence 379999999888 99999999999999999 99999 899 9999999999988765
No 126
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.88 E-value=0.00011 Score=68.59 Aligned_cols=92 Identities=15% Similarity=0.047 Sum_probs=64.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
+.+.+.++|||+..+........+..+|.+|+|+.+...-...+...++.+...+.|++ +++|+.+.....
T Consensus 77 ~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPii-v~iNK~D~~~a~-------- 147 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIF-TFINKLDRDGRE-------- 147 (526)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEE-EEEECCcccccC--------
Confidence 56889999999764433334556778999999998876544556677777777888865 999999842111
Q ss_pred CCchhhHHHHHhCCcEEE-eec
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIP 238 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip 238 (295)
....++++.+.++.+++. .+|
T Consensus 148 ~~~~l~~i~~~l~~~~~p~~~P 169 (526)
T PRK00741 148 PLELLDEIEEVLGIACAPITWP 169 (526)
T ss_pred HHHHHHHHHHHhCCCCeeEEec
Confidence 123467888888877554 555
No 127
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.86 E-value=9.4e-05 Score=60.16 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=50.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.++++|||+...........+..+|.+++|+.+...-.......+..+...+.+.+.+++|+.+.
T Consensus 63 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 63 ANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 45678999999643322234566678999999998877555667778888888888755689999995
No 128
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.85 E-value=1.8e-05 Score=64.49 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=36.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCccccc
Q 022525 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM 80 (295)
Q Consensus 39 ~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~ 80 (295)
+..|.||||-+..+...|.. .|++|.+|.+||.+.++..-+
T Consensus 9 GPPgSGKsTYc~g~~~fls~-~gr~~~vVNLDPaNd~~~Y~~ 49 (290)
T KOG1533|consen 9 GPPGSGKSTYCNGMSQFLSA-IGRPVAVVNLDPANDNLPYEC 49 (290)
T ss_pred cCCCCCccchhhhHHHHHHH-hCCceEEEecCCcccCCCCCC
Confidence 78899999999999999999 999999999999986655433
No 129
>PRK12740 elongation factor G; Reviewed
Probab=97.83 E-value=0.00019 Score=69.47 Aligned_cols=93 Identities=17% Similarity=0.068 Sum_probs=64.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
.+|+++++|||+..+........+..+|.+++|+.+...........+..+...+.+.+ +|+|+.+.... .
T Consensus 58 ~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~~~-------~- 128 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRAGA-------D- 128 (668)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCCCC-------C-
Confidence 67999999999765432334556778999999999887655566667777777777776 79999984311 1
Q ss_pred CCchhhHHHHHhCCcEE-EeecC
Q 022525 218 GKGGTHRTAAEMGLKVI-GEIPI 239 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~-~~Ip~ 239 (295)
.....+++.+.++.+++ ..+|.
T Consensus 129 ~~~~~~~l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 129 FFRVLAQLQEKLGAPVVPLQLPI 151 (668)
T ss_pred HHHHHHHHHHHHCCCceeEEecc
Confidence 12346677777777654 35663
No 130
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.81 E-value=0.00016 Score=59.62 Aligned_cols=67 Identities=16% Similarity=0.067 Sum_probs=45.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|||+...........+..+|.+++|+.............++.+...+.+.+ +|+|+.+.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~ 135 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIV-LVINKIDR 135 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 46889999999765432344556678999999988765443344455555555565554 99999995
No 131
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=97.80 E-value=0.00047 Score=67.57 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=49.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCc-------eEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEecc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLS-------GALIVSTPQDVALIDARKGITMFSKVQVPILGLVENM 202 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad-------~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~ 202 (295)
..+|++||.+.+|+-... .. ....+| -+|+|......++..+.-.++.++..++++.++|+|.
T Consensus 183 ~~~d~vlVEGAGGl~vPl-~~-~~~~~Dl~~~l~lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~ 252 (817)
T PLN02974 183 GGRVLALVETAGGVASPG-PS-GTLQCDLYRPLRLPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIED 252 (817)
T ss_pred ccCCeEEEECCCcccccC-CC-CCCHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeC
Confidence 358999999999875321 10 111122 4789999999999999999999999999999999995
No 132
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=97.80 E-value=0.00029 Score=62.06 Aligned_cols=194 Identities=16% Similarity=0.218 Sum_probs=104.1
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccc-cCC-ceeecc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIE-NYG-VKCMSM 107 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~-~~~~~~ 107 (295)
|++++.+++...|+|||+++.+|++.|.+ +|.+|.++ .|-. ...|.+............... ... ..++..
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~-k~~kva~~-----kPI~-~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~~ 73 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQ-KGLKVAYF-----KPIG-TRTGKDADDLTEEDIRATSSSLTYAEPLVLSF 73 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHHH-cCceeEEE-----eccc-cccCCccchhHHHHHHHhhhhcccCcccchhh
Confidence 57899999999999999999999999999 99999988 4332 222222211111111110000 000 000000
Q ss_pred -ccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCC-C-----CCccchhhhhhccCceEEEeeCCCcchHHH
Q 022525 108 -GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP-G-----TGDAQLTTTQTLQLSGALIVSTPQDVALID 180 (295)
Q Consensus 108 -~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~-~-----~~~~~~~~~~l~~ad~viiv~~~~~~s~~~ 180 (295)
-.+.... ......+.+..-...+. ..+|++++..-- . ....+..+..-.. ..++++..+...+...
T Consensus 74 ae~L~~~~-----~~d~l~e~i~~~y~e~~-~~~~~vv~~g~~~~~~~~~~~~ln~~iA~~Ln-a~~vlva~~~~~~~~~ 146 (354)
T COG0857 74 AEVLLSTG-----QDDVLLEEILANYAELA-KDADVVVVEGDVPTREGPYALDLNYEIAKNLN-AAAVLVARALLVTPYE 146 (354)
T ss_pred HHHHhccc-----cchHHHHHHHHHHHHHh-ccCceEEeccceeccccCccccccHHHHhhcC-cchhhccccccCChhh
Confidence 0011111 12223344555555565 566666665431 1 1111222333223 3345555555555555
Q ss_pred HHHHHHHHh----cCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcccc
Q 022525 181 ARKGITMFS----KVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIR 244 (295)
Q Consensus 181 ~~~~~~~l~----~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~ 244 (295)
....++... ..+..+.|+|+|+.+. ......+..+.++.+..+..+++.+|....+.
T Consensus 147 ~~~~i~~~~~~~~~~~~~l~gVv~N~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ll~ 207 (354)
T COG0857 147 LKSRVELALAAFGAAGNNLAGVVINNAPV-------DEAGRTEDLLAEFLESSGIAVVGVLPPNRLLR 207 (354)
T ss_pred hhhHHHHHHHHhcccCCceEEEEecCCCh-------hhhhhhhhHHHHHhhhccccccccCCHHHHhc
Confidence 554444443 3344789999995542 12222245688888888888889999776654
No 133
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.73 E-value=0.00021 Score=58.79 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=44.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
....+.|+|||+...........+..+|.+++|+.....-..........+...+.+.+.+|+|+.+.
T Consensus 75 ~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 142 (208)
T cd04166 75 PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDL 142 (208)
T ss_pred CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhc
Confidence 45678999999643211122344567899999988876544444455555555665655578999995
No 134
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.72 E-value=0.00017 Score=57.79 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=45.6
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.++++++|+|+...........+..+|.+++++.............+..+...+.+++ +|+|+.+.
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~-iv~nK~D~ 126 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPII-VAINKIDR 126 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeE-EEEECCCC
Confidence 5789999999644322334455567999999988776544455566666665566654 99999984
No 135
>PRK08233 hypothetical protein; Provisional
Probab=97.72 E-value=0.0002 Score=57.36 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=30.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.+|+|.|++ |+||||+|..|+..|.. ..++..|.+.+
T Consensus 3 ~~iI~I~G~~-GsGKtTla~~L~~~l~~---~~~~~~d~~~~ 40 (182)
T PRK08233 3 TKIITIAAVS-GGGKTTLTERLTHKLKN---SKALYFDRYDF 40 (182)
T ss_pred ceEEEEECCC-CCCHHHHHHHHHhhCCC---CceEEECCEEc
Confidence 4788887766 99999999999987754 37777877754
No 136
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.71 E-value=0.00043 Score=57.57 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=49.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhc--cCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTL--QLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.++|||+...........+. .+|.+++++..+..-.......+.++...+.++ .+|+|+.|.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~ 150 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDL 150 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 6788999999965332122233332 578999998887766677788888888889886 499999984
No 137
>COG1159 Era GTPase [General function prediction only]
Probab=97.69 E-value=0.00032 Score=59.50 Aligned_cols=111 Identities=19% Similarity=0.164 Sum_probs=76.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (295)
.|+|. ++..|||||+.- +- .|.|+.++.--+|. +.+...|...
T Consensus 8 fVaIi-GrPNvGKSTLlN------~l-~G~KisIvS~k~QT-TR~~I~GI~t---------------------------- 50 (298)
T COG1159 8 FVAII-GRPNVGKSTLLN------AL-VGQKISIVSPKPQT-TRNRIRGIVT---------------------------- 50 (298)
T ss_pred EEEEE-cCCCCcHHHHHH------HH-hcCceEeecCCcch-hhhheeEEEE----------------------------
Confidence 45554 899999999988 44 79999999777765 3332222210
Q ss_pred CCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc--------chhhhhhccCceEEEeeCCCcchHHHHHHH
Q 022525 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA--------QLTTTQTLQLSGALIVSTPQDVALIDARKG 184 (295)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~--------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~ 184 (295)
.+.+.+|++|||+-..+. ......+..+|.++.++..+..--.+....
T Consensus 51 ------------------------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~i 106 (298)
T COG1159 51 ------------------------TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFI 106 (298)
T ss_pred ------------------------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHH
Confidence 067889999999532221 124456668999999998888544466667
Q ss_pred HHHHhcCCCCeeeEEeccccC
Q 022525 185 ITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 185 ~~~l~~~~~~~~~~ViN~~~~ 205 (295)
++.+.+...+.+ +++|+++.
T Consensus 107 l~~lk~~~~pvi-l~iNKID~ 126 (298)
T COG1159 107 LEQLKKTKTPVI-LVVNKIDK 126 (298)
T ss_pred HHHHhhcCCCeE-EEEEcccc
Confidence 777776555665 99999984
No 138
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.69 E-value=0.00029 Score=65.91 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=60.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..+.+.++|||+..+........+..+|.+|+|+.....-...+...++.++..+.+++ +++|+.+.... .
T Consensus 78 ~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~Pii-vviNKiD~~~~-------~- 148 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIF-TFMNKLDRDIR-------D- 148 (527)
T ss_pred CCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECccccCC-------C-
Confidence 56889999999754322334556778999999998876544455666666666677754 89999984211 0
Q ss_pred CCchhhHHHHHhCCcEEE-eec
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIP 238 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip 238 (295)
.....+++.+.++..... .+|
T Consensus 149 ~~~ll~~i~~~l~~~~~~~~~P 170 (527)
T TIGR00503 149 PLELLDEVENELKINCAPITWP 170 (527)
T ss_pred HHHHHHHHHHHhCCCCccEEEE
Confidence 113466777777765432 444
No 139
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=6.5e-05 Score=63.25 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=91.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..-.|--+|||+..+-.--.+.....+|..|+|+.+....+-.+...+-..++.|.+.+.+++|+++..... ....+
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~---ellel 149 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDE---ELLEL 149 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcH---HHHHH
Confidence 456678899997665221123333467999999999998888898888888899999988999999854211 00111
Q ss_pred CCchhhHHHHHhCCc-EEEeecCCccccccccCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 022525 218 GKGGTHRTAAEMGLK-VIGEIPIEMDIRKGSDDGVPVVISAPDSTVSRAYGEVAVNVVNRLQELAKEQEHPES 289 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~-~~~~Ip~~~~~~~a~~~g~~i~~~~~~s~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 289 (295)
-....+++++.+|.+ ....|+....+... ..+.++...+.+|.+.+-+.+....++..+|++
T Consensus 150 VemEvreLLs~y~f~gd~~Pii~gSal~al----------e~~~~~~~~i~eLm~avd~yip~Per~~dkPfl 212 (394)
T COG0050 150 VEMEVRELLSEYGFPGDDTPIIRGSALKAL----------EGDAKWEAKIEELMDAVDSYIPTPERDIDKPFL 212 (394)
T ss_pred HHHHHHHHHHHcCCCCCCcceeechhhhhh----------cCCcchHHHHHHHHHHHHhcCCCCCCccccccc
Confidence 112366788888876 22344444444221 122346777888888887777766666666665
No 140
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.65 E-value=0.00017 Score=55.32 Aligned_cols=42 Identities=24% Similarity=0.197 Sum_probs=32.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEE-EEEeCCCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG-LLDADVYGPS 75 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vl-liD~D~~~~~ 75 (295)
++|.|++.| |+||||++..|...|.+ +|++|. +.|.|..++.
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~g~~~ 43 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELKR-RGYRVAVIKHTDHGQFE 43 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHHH-TT--EEEEEE-STTSTT
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHhH-cCCceEEEEEccCCCcc
Confidence 478888876 99999999999999999 999998 8888884433
No 141
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.61 E-value=0.00049 Score=67.06 Aligned_cols=67 Identities=18% Similarity=0.086 Sum_probs=50.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..|.+.++|||+...........+..+|.+++|+.....-.......++.+.+.+.+.+ +++|+++.
T Consensus 84 ~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 150 (720)
T TIGR00490 84 NEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDR 150 (720)
T ss_pred CceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 67999999999765433445667788999999998766444455666777666777776 99999984
No 142
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.60 E-value=0.00069 Score=56.21 Aligned_cols=67 Identities=21% Similarity=0.106 Sum_probs=51.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|||+...........+..+|.+++|+.............++.+...+.+++ +|+|+++.
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~i-lviNKiD~ 137 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPV-LVINKIDR 137 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCc
Confidence 57889999999766544455667788999999998877666666777777776777754 99999984
No 143
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.54 E-value=0.00073 Score=52.30 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=43.0
Q ss_pred CCccEEEEcCCCCCCccc--------hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQ--------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~--------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|||+...... .....+..+|.++++.............+.+++.+.+.+++ +|+|+.+.
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~ 117 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVI-LVVNKVDN 117 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEE-EEEECccc
Confidence 457899999996544211 11234557899999988765322233345566666666654 99999984
No 144
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.48 E-value=0.002 Score=50.50 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=26.5
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.+..+--|+||||+...+... . .|.++.++-.|..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~--~-~~~~~~~i~~~~G 37 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE--Q-HGRKIAVIENEFG 37 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc--c-cCCcEEEEecCCC
Confidence 445688899999999987754 3 5788888766653
No 145
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.47 E-value=0.0015 Score=50.77 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=41.7
Q ss_pred CCccEEEEcCCCCCCccc--------hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQ--------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~--------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..++++++|+|+-..... .....+..+|.++++...............+.+...+.+.+ +|+|+.+.
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl 123 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVI-LVLNKIDL 123 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEE-EEEEchhc
Confidence 357899999985332111 11233557888888888776533344455555555555654 99999984
No 146
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.44 E-value=0.0011 Score=51.87 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=36.6
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
|+++++|++ .-|+||||+...|...|.+ +|++|.+|-.....
T Consensus 1 m~~Il~ivG-~k~SGKTTLie~lv~~L~~-~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIVG-YKNSGKTTLIEKLVRKLKA-RGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEEe-cCCCChhhHHHHHHHHHHh-CCcEEEEEEecCCC
Confidence 479999984 5578999999999999999 99999999777654
No 147
>PRK00089 era GTPase Era; Reviewed
Probab=97.44 E-value=0.0018 Score=56.20 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=42.4
Q ss_pred CCccEEEEcCCCCCCcc--------chhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDA--------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~--------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.++++|||+-.... ......+..+|.++++++....--......++.+...+.+.+ +|+|++|.
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKiDl 125 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKIDL 125 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECCcC
Confidence 44789999999643311 112234567899999988776322334455555555555665 99999984
No 148
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.41 E-value=0.00054 Score=62.93 Aligned_cols=68 Identities=16% Similarity=0.021 Sum_probs=52.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchH-------HHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL-------IDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.+.|||||+......-....+..+|.+++|+.+....+ ..+.+.+..+...+++.+.+++|+.|.
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDD 157 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 67889999999755433344566778999999998876532 467778888888899887799999983
No 149
>PRK00007 elongation factor G; Reviewed
Probab=97.39 E-value=0.0006 Score=66.21 Aligned_cols=93 Identities=16% Similarity=0.066 Sum_probs=65.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
.++.+.+||||+..+...-....+..+|.+++|++....--......+..+.+.+.+.+ +++|++|.....
T Consensus 73 ~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~-------- 143 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRTGAD-------- 143 (693)
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCCCCC--------
Confidence 56889999999755432334556778899999998777656667788888888898886 999999953111
Q ss_pred CCchhhHHHHHhCCcEE-EeecC
Q 022525 218 GKGGTHRTAAEMGLKVI-GEIPI 239 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~-~~Ip~ 239 (295)
.....+++.+.++.... ..||-
T Consensus 144 ~~~~~~~i~~~l~~~~~~~~ipi 166 (693)
T PRK00007 144 FYRVVEQIKDRLGANPVPIQLPI 166 (693)
T ss_pred HHHHHHHHHHHhCCCeeeEEecC
Confidence 12346777777776443 35664
No 150
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.37 E-value=0.0004 Score=53.96 Aligned_cols=42 Identities=38% Similarity=0.348 Sum_probs=35.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~ 74 (295)
+.+|.++ +..|+||||+|..|...|.. .|.+|.++|.|.--.
T Consensus 2 g~vIwlt-GlsGsGKtTlA~~L~~~L~~-~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLT-GLSGSGKTTLARALERRLFA-RGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEE-SSTTSSHHHHHHHHHHHHHH-TTS-EEEEEHHHHCT
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCcEEEecCcchhh
Confidence 4677775 88899999999999999999 999999999996543
No 151
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.37 E-value=0.00052 Score=53.79 Aligned_cols=41 Identities=29% Similarity=0.341 Sum_probs=36.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
|++|+|++.+ |+||||++..|...|.. .|++|..|..|...
T Consensus 1 m~vi~i~G~~-gsGKTTli~~L~~~l~~-~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGYS-GSGKTTLLEKLIPALSA-RGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHHHH-cCCcEEEEEecCCc
Confidence 4789998775 99999999999999999 99999999887654
No 152
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.36 E-value=0.00044 Score=54.03 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=32.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+|+|++. -|+||||++..|...|.. +|++|.+|..|..
T Consensus 1 vi~i~G~-~gsGKTtl~~~l~~~l~~-~G~~V~viK~~~~ 38 (155)
T TIGR00176 1 VLQIVGP-KNSGKTTLIERLVKALKA-RGYRVATIKHDHH 38 (155)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHh-cCCeEEEEecccc
Confidence 4667655 599999999999999999 9999999998754
No 153
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.35 E-value=0.00064 Score=52.99 Aligned_cols=37 Identities=32% Similarity=0.326 Sum_probs=33.3
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 36 i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+..++.|+||||++..++..++. .|.+|++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~ 39 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEI 39 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcch
Confidence 44688999999999999999999 99999999998664
No 154
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.35 E-value=0.00081 Score=54.55 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=45.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.+.++|||+...........+..+|.+++|..............+..+...+.+++ +|+|+.+.
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl 129 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDR 129 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 56778999999644322233445567899999988776444444455555555677764 89999995
No 155
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.33 E-value=0.0033 Score=56.48 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=46.8
Q ss_pred CCccEEEEcCCCCCCccc----------hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQ----------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.+|||++ +.... .+..++..||.++.|+.....-...-....+++++.+.|++ +|+|+++.
T Consensus 49 ~~~~f~lIDTgG-l~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpvi-LvvNK~D~ 124 (444)
T COG1160 49 LGREFILIDTGG-LDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVI-LVVNKIDN 124 (444)
T ss_pred cCceEEEEECCC-CCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEEcccC
Confidence 567799999994 44211 25566778999999999887545555566667765555554 99999984
No 156
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.33 E-value=0.00051 Score=56.99 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=34.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
|++|+|++.+ |+||||++.+|+..|.+ +|++|.+|..+
T Consensus 1 m~vi~ivG~~-gsGKTtl~~~l~~~L~~-~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGFK-DSGKTTLIEKILKNLKE-RGYRVATAKHT 38 (229)
T ss_pred CeEEEEECCC-CChHHHHHHHHHHHHHh-CCCeEEEEEec
Confidence 5789999885 99999999999999999 99999999764
No 157
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.32 E-value=0.0011 Score=51.65 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=28.0
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
|-|+.+. |.||||.|..+|...+. +|++|++|-+
T Consensus 5 i~vy~g~-G~Gkt~~a~g~~~ra~~-~g~~v~~vQF 38 (159)
T cd00561 5 IQVYTGN-GKGKTTAALGLALRALG-HGYRVGVVQF 38 (159)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHHH-CCCeEEEEEE
Confidence 3344333 99999999999999999 9999999743
No 158
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.31 E-value=0.0017 Score=59.64 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=43.4
Q ss_pred CCccEEEEcCCCCCCccc--------hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQ--------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~--------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.++++.|+|||+...... .....+..+|.++++++....-...-....+++++.+.+++ +|+|+.+.
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~D~ 121 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVI-LVVNKVDG 121 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEE-EEEECccC
Confidence 347799999985433111 12234567999999988766322333455666766677765 99999983
No 159
>PRK12739 elongation factor G; Reviewed
Probab=97.30 E-value=0.0011 Score=64.42 Aligned_cols=93 Identities=17% Similarity=0.095 Sum_probs=63.7
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
+++.++++|||+..+........+..+|.+++|++....--......+..+.+.+.+.+ +++|++|.....
T Consensus 71 ~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~~~-------- 141 (691)
T PRK12739 71 KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRIGAD-------- 141 (691)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC--------
Confidence 57889999999754332345566778999999998876545556677888888888886 999999953110
Q ss_pred CCchhhHHHHHhCCcEE-EeecC
Q 022525 218 GKGGTHRTAAEMGLKVI-GEIPI 239 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~-~~Ip~ 239 (295)
.....+++.+.++.... ..+|.
T Consensus 142 ~~~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 142 FFRSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHHHhCCCceeEEecc
Confidence 12346677777765433 35553
No 160
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.28 E-value=0.002 Score=51.30 Aligned_cols=67 Identities=13% Similarity=0.032 Sum_probs=41.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.++|||+...........+..+|.+|+|.......-......+..+...+.++ .+|+|+.+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~i-iiv~NK~Dl 131 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEI-IPVINKIDL 131 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCE-EEEEECCCC
Confidence 5678899999965443233344566799999998876532122222223333456665 489999984
No 161
>PRK10218 GTP-binding protein; Provisional
Probab=97.27 E-value=0.0026 Score=60.54 Aligned_cols=67 Identities=13% Similarity=0.033 Sum_probs=51.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.+.|+|||+...........+..+|.+++|+.....-...+...+..+...+.+.+ +++|+.+.
T Consensus 66 ~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~ 132 (607)
T PRK10218 66 NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDR 132 (607)
T ss_pred CCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCC
Confidence 56889999999755433344556778999999998877656666777777777888875 89999994
No 162
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.27 E-value=0.00063 Score=57.23 Aligned_cols=41 Identities=29% Similarity=0.297 Sum_probs=32.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH-----------hCCCeEEEEEeCCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALAS-----------KCQLKVGLLDADVYG 73 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~-----------~~g~~VlliD~D~~~ 73 (295)
.++++.+.||+||||++..+|..+|. ..+.+|++++++-..
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~ 53 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH
Confidence 36777899999999999999998873 135689999887644
No 163
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.26 E-value=0.0043 Score=60.36 Aligned_cols=93 Identities=15% Similarity=0.081 Sum_probs=62.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
.++.+.++|||+...........+..+|.+++|++....--......+..+.+.+.+.+ +++|+.+.....
T Consensus 73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~-------- 143 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDKTGAN-------- 143 (689)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCCCCCC--------
Confidence 56889999999654432334556778899999998776544555677777777788876 899999953111
Q ss_pred CCchhhHHHHHhCCcEE-EeecC
Q 022525 218 GKGGTHRTAAEMGLKVI-GEIPI 239 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~-~~Ip~ 239 (295)
-....+++.+.++.... ..||.
T Consensus 144 ~~~~~~~i~~~l~~~~~~~~ipi 166 (689)
T TIGR00484 144 FLRVVNQIKQRLGANAVPIQLPI 166 (689)
T ss_pred HHHHHHHHHHHhCCCceeEEecc
Confidence 01346677777765432 35664
No 164
>PLN03127 Elongation factor Tu; Provisional
Probab=97.26 E-value=0.0032 Score=57.89 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=50.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.++++|||+.-.........+..+|.+++|++....-.......+..+...+.+.+.+++|++|.
T Consensus 122 ~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 122 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 45678999999654322223445567999999999876555667788888888898876689999995
No 165
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00068 Score=53.14 Aligned_cols=51 Identities=31% Similarity=0.238 Sum_probs=41.4
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccc
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK 81 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g 81 (295)
..+.+|.|+ +-.|.||||+|..|...|.+ .|+.|-++|-|.--..+..-+|
T Consensus 21 ~~~~viW~T-GLSGsGKSTiA~ale~~L~~-~G~~~y~LDGDnvR~gL~~dLg 71 (197)
T COG0529 21 QKGAVIWFT-GLSGSGKSTIANALEEKLFA-KGYHVYLLDGDNVRHGLNRDLG 71 (197)
T ss_pred CCCeEEEee-cCCCCCHHHHHHHHHHHHHH-cCCeEEEecChhHhhcccCCCC
Confidence 346788887 66789999999999999999 9999999999966544444443
No 166
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.23 E-value=0.0015 Score=51.02 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=40.0
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+.+.++|||+...........+..+|.+++|...+..-.......+..+...+.+.+.+|+|+.+.
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADL 116 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccc
Confidence 3568999998643211122233457899999988765322333333444444455345599999984
No 167
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.22 E-value=0.00077 Score=55.80 Aligned_cols=41 Identities=34% Similarity=0.426 Sum_probs=34.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+.++.| .+.+|+||||++.++|..++. .|.+|++||.+...
T Consensus 19 g~i~~i-~G~~GsGKT~l~~~~a~~~~~-~g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQV-YGPPGTGKTNIAIQLAVETAG-QGKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCCCC
Confidence 345554 579999999999999999999 89999999987543
No 168
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.20 E-value=0.0022 Score=50.68 Aligned_cols=38 Identities=26% Similarity=0.279 Sum_probs=31.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+..+ ..-|.||||.|..+|...+. +|++|+++-+--
T Consensus 6 Gli~v~--~g~GkGKtt~a~g~a~ra~~-~g~~v~ivQFlK 43 (173)
T TIGR00708 6 GIIIVH--TGNGKGKTTAAFGMALRALG-HGKKVGVIQFIK 43 (173)
T ss_pred cEEEEE--CCCCCChHHHHHHHHHHHHH-CCCeEEEEEEec
Confidence 445555 33899999999999999999 999999985543
No 169
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.19 E-value=0.00092 Score=53.31 Aligned_cols=40 Identities=33% Similarity=0.376 Sum_probs=35.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+++|+++ +-.|+||||++..|+..+.. .|.++.+||.|..
T Consensus 4 g~~i~~~-G~~GsGKST~a~~la~~l~~-~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFT-GLSGAGKTTIARALAEKLRE-AGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEEcCccH
Confidence 5777776 88899999999999999998 8999999998854
No 170
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.19 E-value=0.00063 Score=56.44 Aligned_cols=68 Identities=15% Similarity=0.012 Sum_probs=43.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch-------HHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-------LIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.++|||+...........+..+|.+++|+...... ...+...+..+...+.+.+.+++|+.+.
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl 149 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDD 149 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 5788999999964322122334455689999998876631 2234444445555665556689999984
No 171
>PRK00049 elongation factor Tu; Reviewed
Probab=97.17 E-value=0.004 Score=56.42 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=50.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.++++|||+...........+..+|.++++++....-.......+..+...+.+.+.+++|++|.
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 45678999999643221223455667999999999877555667778888888888876678999995
No 172
>PLN03126 Elongation factor Tu; Provisional
Probab=97.12 E-value=0.0037 Score=57.83 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=50.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.+.+||+|+...........+..+|.+++|+.....-...+.+.+..+...+.+.+.+++|+.|.
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 45678999999643322233555667899999998776656667777788888888866689999995
No 173
>PRK04296 thymidine kinase; Provisional
Probab=97.10 E-value=0.0018 Score=52.50 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=29.2
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
|.++.+.-|+||||.+..++..++. +|++|+++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEE
Confidence 4444578899999999999999999 99999999
No 174
>PRK07667 uridine kinase; Provisional
Probab=97.10 E-value=0.0013 Score=53.39 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=34.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.+|+| ++-.|+||||+|..|+..|.. .|.+|.++++|..
T Consensus 18 ~iIgI-~G~~gsGKStla~~L~~~l~~-~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGI-DGLSRSGKTTFVANLKENMKQ-EGIPFHIFHIDDY 56 (193)
T ss_pred EEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCcEEEEEcCcc
Confidence 56666 599999999999999999999 9999999999964
No 175
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.09 E-value=0.0015 Score=52.70 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=36.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~ 74 (295)
++.-.++-+..|.||||.+.++-...-. -|+++-+|.+||.+-
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~-~gRs~~vVNLDPAae 44 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCET-VGRSVHVVNLDPAAE 44 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHh-hCceeEEeecCHHHH
Confidence 3444555588999999999999999999 899999999999763
No 176
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.08 E-value=0.0069 Score=51.93 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=42.0
Q ss_pred CCccEEEEcCCCCCCcc-c-------hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDA-Q-------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~-~-------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.++++|||+-.... . .....+..+|.++++.+.+...... ...++.+...+.+.+ +|+|+.|.
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~i-lV~NK~Dl 119 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVV-LTRNKLDN 119 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEE-EEEECeeC
Confidence 34568999998533210 0 1223456799999998877643332 445556665666665 99999984
No 177
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.07 E-value=0.0017 Score=48.89 Aligned_cols=40 Identities=33% Similarity=0.302 Sum_probs=32.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
..+.++ +..|+||||++..+|..+.. .+..++.++++...
T Consensus 3 ~~~~l~-G~~G~GKTtl~~~l~~~~~~-~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIV-GPPGSGKTTLARALARELGP-PGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhccCC-CCCCEEEECCEEcc
Confidence 455555 66999999999999999998 67789999887654
No 178
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.06 E-value=0.0012 Score=54.96 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=33.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+.++.+ ++..|+|||+++.+++..+++ .|.+|++||++
T Consensus 23 g~i~~i-~G~~GsGKT~l~~~la~~~~~-~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQI-YGPPGSGKTNICLQLAVEAAK-NGKKVIYIDTE 60 (225)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCeEEEEECC
Confidence 345555 589999999999999999999 99999999999
No 179
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.05 E-value=0.0013 Score=59.25 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=35.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
|++|+|++.| |+||||+...|...|.. +|++|.+|-.+..
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~-rG~rVavIKH~hH 40 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAA-RGFSVSTVKHSHH 40 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHh-CCCeEEEEeccCc
Confidence 5799999876 99999999999999999 9999999976543
No 180
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.04 E-value=0.012 Score=47.96 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=41.6
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhcC--CCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.++++.+.. ..++..+...+..+... ..++ .+|.|+.+.
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~pi-ivVgNK~Dl 122 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCK-VLVGNKNDD 122 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECccc
Confidence 456889999864332223334455688888887764 45666666666665543 2344 589999984
No 181
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.04 E-value=0.0016 Score=56.87 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=34.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++-|+ +..|+||||++.+++...++ .|.+|++||+...
T Consensus 55 G~iteI~-G~~GsGKTtLaL~~~~~~~~-~g~~v~yId~E~~ 94 (321)
T TIGR02012 55 GRIIEIY-GPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHA 94 (321)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCcEEEEcccch
Confidence 4566665 56899999999999999999 9999999998753
No 182
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.0015 Score=49.70 Aligned_cols=54 Identities=28% Similarity=0.218 Sum_probs=42.4
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCC
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~ 84 (295)
..+-+|.++ +-.|.||||+|..|..+|-+ +|+-+..+|-|.-...+..-+|...
T Consensus 29 qkGcviWiT-GLSgSGKStlACaL~q~L~q-rgkl~Y~LDGDNvRhGLN~DL~F~a 82 (207)
T KOG0635|consen 29 QKGCVIWIT-GLSGSGKSTLACALSQALLQ-RGKLTYILDGDNVRHGLNKDLGFKA 82 (207)
T ss_pred CCCcEEEEe-ccCCCCchhHHHHHHHHHHh-cCceEEEecCcccccccccccCcch
Confidence 347888887 56789999999999999999 9999999998865544444444433
No 183
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.03 E-value=0.0022 Score=58.89 Aligned_cols=68 Identities=16% Similarity=0.004 Sum_probs=51.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchH-------HHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL-------IDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.+.|||+|+...........+..+|.+|+|+......+ ..+.+.+..+...+++.+.+++|+.|.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccC
Confidence 56889999999754433344566778999999999887544 356677777777899877789999984
No 184
>PRK05973 replicative DNA helicase; Provisional
Probab=97.00 E-value=0.0014 Score=54.78 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=36.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
-.+.+.++..|+|||+++.+++...++ .|.+|+++.++...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~ 104 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTE 104 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCH
Confidence 445666799999999999999999999 89999999998754
No 185
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.99 E-value=0.0083 Score=46.72 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=41.9
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
.+.+.++|+|+...........+..+|.++++..... .++..+...+..+.. .+.++ .+|.|+.+.
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pi-vvv~nK~D~ 117 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVI-MLVGNKSDL 117 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEEchhc
Confidence 4678899998643322233444557898888887765 356666555555443 23444 599999984
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.99 E-value=0.0062 Score=46.69 Aligned_cols=66 Identities=20% Similarity=0.121 Sum_probs=43.0
Q ss_pred CccEEEEcCCCCCCccc-------hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQ-------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~-------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.++++++|+|+...... .....+..+|.++++..+..................+.+.+ +|+|+.+.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVL-LVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEE-EEEEcccc
Confidence 68899999996433211 12234557899888888877654444444555555666655 99999984
No 187
>PRK06696 uridine kinase; Validated
Probab=96.98 E-value=0.0018 Score=53.82 Aligned_cols=41 Identities=24% Similarity=0.157 Sum_probs=34.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+.+|+| ++..|+||||+|..|+..|.. .|.+|+.+.+|-..
T Consensus 22 ~~iI~I-~G~sgsGKSTlA~~L~~~l~~-~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAI-DGITASGKTTFADELAEEIKK-RGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEecccccc
Confidence 356666 689999999999999999999 89999998777554
No 188
>PTZ00416 elongation factor 2; Provisional
Probab=96.96 E-value=0.0046 Score=61.30 Aligned_cols=67 Identities=16% Similarity=0.061 Sum_probs=52.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..|-+.++|||+..+...-....+..+|.+|+|+.+...-...+...++.+...+.+.+ +++|+.|.
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~ 156 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDR 156 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhh
Confidence 46779999999766543345666778999999999887666667788888888887775 89999984
No 189
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.95 E-value=0.023 Score=46.59 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=31.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.++|+|+ +--|+||||+..++...+.. +.+|.++..|+.
T Consensus 22 ~~~i~~~-G~~gsGKTTli~~l~~~~~~--~~~v~v~~~~~~ 60 (207)
T TIGR00073 22 LVVLNFM-SSPGSGKTTLIEKLIDNLKD--EVKIAVIEGDVI 60 (207)
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHHhc--CCeEEEEECCCC
Confidence 5777775 77899999999999887654 579999997764
No 190
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.94 E-value=0.0042 Score=59.07 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=52.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+++.+.|+|||+..+........+..+|.+++|+.........+...+..+...+++.+ +|+|+.|.
T Consensus 62 ~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~I-VviNKiD~ 128 (594)
T TIGR01394 62 NGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDR 128 (594)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEE-EEEECCCC
Confidence 56889999999754433334556778999999999877666777788888888888875 99999994
No 191
>COG2403 Predicted GTPase [General function prediction only]
Probab=96.92 E-value=0.017 Score=50.56 Aligned_cols=38 Identities=34% Similarity=0.406 Sum_probs=36.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
..+|+|++..-|+|||+++.-+|..|++ +|++|++|=.
T Consensus 126 kPviaV~atrtg~GKsaVS~~v~r~l~e-rgyrv~vVrh 163 (449)
T COG2403 126 KPVIAVTATRTGVGKSAVSRYVARLLRE-RGYRVCVVRH 163 (449)
T ss_pred CceEEEEEeccccchhHHHHHHHHHHHH-cCCceEEEec
Confidence 4899999999999999999999999999 9999999965
No 192
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.91 E-value=0.0017 Score=52.14 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=34.1
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+..+..|+|||+++..+++..++ .|.+|+++.++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~~~ 39 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESP 39 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCH
Confidence 456799999999999999999999 99999999988654
No 193
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.0016 Score=54.83 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=31.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
-.+..+++|+|||+++.++|..+.+ .|++|+++++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEH
Confidence 4566799999999999999999999 9999999954
No 194
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.88 E-value=0.0042 Score=52.01 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=34.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.++ +..|+|||+++.++++..++ +|.+|++++++..
T Consensus 25 g~~~~i~-G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~ 64 (234)
T PRK06067 25 PSLILIE-GDHGTGKSVLSQQFVYGALK-QGKKVYVITTENT 64 (234)
T ss_pred CcEEEEE-CCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCC
Confidence 3555554 89999999999999999999 9999999999743
No 195
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=96.88 E-value=0.013 Score=51.47 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=36.4
Q ss_pred CeEEEEeeC-CCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASG-KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~-kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+||+|.|- -||+|||-++.-|+..|.+ +|++|.+|.-.+..
T Consensus 35 vpVIsVGNltvGGTGKTP~v~~L~~~L~~-~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 35 VPVISVGNLTVGGTGKTPLVIWLARLLQA-RGYRPAILSRGYGR 77 (326)
T ss_pred CcEEEEcccccCCCCchHHHHHHHHHHHh-cCCceEEEcCCCCC
Confidence 589999875 4799999999999999999 99999999765543
No 196
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.88 E-value=0.019 Score=45.17 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=42.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCC-CcchHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTP-QDVALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
..+.+.|.|+|+...........+..+|.++++.+. +..++..+...+..+.+. +.++ .+|.|+.+.
T Consensus 50 ~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~Dl 120 (167)
T cd01867 50 KKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVER-MLVGNKCDM 120 (167)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE-EEEEECccc
Confidence 346788999997544223334445678998888765 344666666655555542 3444 489999985
No 197
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.87 E-value=0.013 Score=45.01 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcCC---CCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQ---VPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~---~~~~~~ViN~~~~ 205 (295)
..+++.++|+|+...........+..+|.++++..... .++..+...+..+.... .++ .+|+|+.+.
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 117 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPI-ILVGNKIDL 117 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE-EEEEEcccc
Confidence 45789999999754432344555667899988888765 34666666666665533 444 599999985
No 198
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.002 Score=57.11 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=31.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
-+...++..|+||||+-..++..+|+ ++ +||+|.-..
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~-~~-~vLYVsGEE 130 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAK-RG-KVLYVSGEE 130 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHh-cC-cEEEEeCCc
Confidence 44555899999999999999999999 88 999996553
No 199
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.85 E-value=0.02 Score=45.44 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=43.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
..+.+-|+|+|+...........+..+|.++++.+.. ..++..+...+..+... +.+ +.+|.|+.|.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl 132 (180)
T cd04127 61 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADL 132 (180)
T ss_pred CEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccc
Confidence 4567889999964332223344456789888888765 45667776666655442 334 4589999985
No 200
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.85 E-value=0.0046 Score=51.08 Aligned_cols=30 Identities=33% Similarity=0.337 Sum_probs=23.5
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.++-++.|+||||+|.+|+ .++++++.|..
T Consensus 15 ~liyG~~G~GKtt~a~~~~--------~~~~~~~~d~~ 44 (220)
T TIGR01618 15 YLIYGKPGTGKTSTIKYLP--------GKTLVLSFDMS 44 (220)
T ss_pred EEEECCCCCCHHHHHHhcC--------CCCEEEecccc
Confidence 4445999999999887652 37899999963
No 201
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.85 E-value=0.012 Score=46.02 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=42.5
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.++++.+.+.. ++..+...+..+.. .+.++ .+|.|+.+.
T Consensus 51 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl 120 (165)
T cd01864 51 RVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVL-LLIGNKCDL 120 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE-EEEEECccc
Confidence 36789999997543222333444568988888877664 55665555555544 23445 489999985
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=96.84 E-value=0.006 Score=55.89 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=44.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc--chHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD--VALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~--~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.+.++|||+.-.........+..+|.+++|++... .-.......+..+...+.+.+.+++|+.|.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl 151 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA 151 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 57889999999643211122344567899999988765 222334445555555666656689999985
No 203
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.81 E-value=0.011 Score=45.95 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=42.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc--CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK--VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~--~~~~~~~~ViN~~~~ 205 (295)
..+++.|.|+|+...........+..+|.++++...+. .++..+...+..+.+ .+.|++ +|.|+.|.
T Consensus 49 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~i-iv~nK~Dl 118 (162)
T cd04106 49 EDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMV-LVQTKIDL 118 (162)
T ss_pred CEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhc
Confidence 45779999999754322333444567888888877543 355555555544443 355654 99999985
No 204
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.80 E-value=0.003 Score=51.49 Aligned_cols=41 Identities=37% Similarity=0.327 Sum_probs=35.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+.+|+++ +..|+||||++..|+..|.. .|..++++|.|...
T Consensus 24 ~~~i~i~-G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~ 64 (198)
T PRK03846 24 GVVLWFT-GLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVR 64 (198)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHH
Confidence 5788886 66799999999999999998 89999999888654
No 205
>CHL00071 tufA elongation factor Tu
Probab=96.78 E-value=0.0085 Score=54.58 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=50.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.++++|||+.-.........+..+|.+++++.+...-.......+..+...+.+.+.+++|+.|.
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 45678999999633221233455667999999998887656677778888888888866689999995
No 206
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.78 E-value=0.016 Score=48.20 Aligned_cols=64 Identities=8% Similarity=-0.039 Sum_probs=44.9
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
...++++|||+.+. .....+..+|.++++++....--......+..+...+.+.+.+|+|+.+.
T Consensus 82 ~~~i~~vDtPg~~~---~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~ 145 (225)
T cd01882 82 KRRLTFIECPNDIN---AMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDL 145 (225)
T ss_pred CceEEEEeCCchHH---HHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 44578999996542 22344567899999988765444455667777777777765579999984
No 207
>PRK12736 elongation factor Tu; Reviewed
Probab=96.78 E-value=0.016 Score=52.62 Aligned_cols=68 Identities=22% Similarity=0.252 Sum_probs=49.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.++++|||+...........+..+|.+++|+.....-...+...+..+...+.+.+.+++|+.|.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 45678999999643321223445567899999998877555666777778888888876689999994
No 208
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.77 E-value=0.02 Score=45.01 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=41.9
Q ss_pred ccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 140 yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
..+.|.|+|+...........+..+|.++++.+.. ..++..+...+..+.+. +.++ .+|.|+.+.
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pv-ivv~nK~Dl 121 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTI-MLIGNKCDL 121 (168)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE-EEEEECccc
Confidence 46889999864332233334455788888888865 45666666666655442 3444 599999884
No 209
>PRK15453 phosphoribulokinase; Provisional
Probab=96.74 E-value=0.0035 Score=53.42 Aligned_cols=43 Identities=19% Similarity=0.384 Sum_probs=37.2
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~ 74 (295)
...+|+|+ +-.|+||||++..|+..|.. .+.++.+|+.|....
T Consensus 4 k~piI~It-G~SGsGKTTva~~l~~if~~-~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVT-GSSGAGTTTVKRAFEKIFRR-ENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHhh-cCCCeEEEecccccc
Confidence 35788885 78899999999999999988 888999999997663
No 210
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.74 E-value=0.011 Score=53.57 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=49.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.+.++|||+...........+..+|.+++|+.....-...+.+.+..+...+.+.+.+++|+.|.
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 45678999999643321223444556799999998877555666778888888888877678999984
No 211
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.73 E-value=0.036 Score=43.00 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=42.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++.... ..++.........+.+. +.++ .+|+|+.+.
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-iiv~NK~D~ 117 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPL-LLVGNKCDL 117 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEEcccc
Confidence 3567899999975443344445566778777776543 34555565555555443 4454 599999985
No 212
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.73 E-value=0.0023 Score=51.61 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.+||||+...........+..+|.+|+|+.+...-...+...+..+...+.+ +.+++|++|.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~ 134 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDL 134 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTS
T ss_pred cccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccc
Confidence 789999999997544333445667789999999999887777888999999999999 4599999994
No 213
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.0047 Score=53.10 Aligned_cols=43 Identities=30% Similarity=0.436 Sum_probs=33.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH---hCC------CeEEEEEeCCCCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALAS---KCQ------LKVGLLDADVYGPS 75 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~---~~g------~~VlliD~D~~~~~ 75 (295)
+..|.-+-||+||||++..|+.+|+. ..| .+|++|.|....++
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~ 141 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYRED 141 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHH
Confidence 45566699999999999999999995 124 46888877766544
No 214
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.72 E-value=0.0037 Score=51.31 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=34.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.++.|+ +..|+|||+++..++...+. .|.+|+.||++.
T Consensus 12 g~i~~i~-G~~GsGKT~l~~~~~~~~~~-~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIY-GPPGSGKTNICMILAVNAAR-QGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence 4566664 79999999999999999999 899999999985
No 215
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.71 E-value=0.0053 Score=60.13 Aligned_cols=67 Identities=16% Similarity=0.083 Sum_probs=50.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..|-+.+||||+..+........+..+|.+++|+.....-...+...+..+.+.+.+.+ +++|+.|.
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~i-v~iNK~D~ 151 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPV-LFINKVDR 151 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeE-EEEECchh
Confidence 46778999999765533445566778999999988777655567777777666777764 89999984
No 216
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.70 E-value=0.026 Score=44.13 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=41.0
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
.+.+-|+|+|+...........+..+|.++++.+.+. .++..+...+..+.+. +.++ .+|.|+.+.
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~-iiv~nK~Dl 119 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK-LLVGNKCDL 119 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE-EEEEEChhc
Confidence 4567899998644322222334456899988887644 4566666555555442 3444 589999884
No 217
>PHA02542 41 41 helicase; Provisional
Probab=96.68 E-value=0.0028 Score=58.55 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=37.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~ 74 (295)
.-+.++++..|+||||++.|+|...++ .|++|++++++-...
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~-~g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQ-QGYNVLYISMEMAEE 231 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEEeccCCHH
Confidence 456777899999999999999999998 999999999987654
No 218
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.67 E-value=0.05 Score=42.37 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=41.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...+. .++..+....+.+.+ .+.|+ .+|.|+.+.
T Consensus 46 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-i~v~nK~Dl 117 (164)
T smart00173 46 EVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI-VLVGNKCDL 117 (164)
T ss_pred EEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 34678899998644432333344557888888877654 455555554444433 23454 489999984
No 219
>PRK15494 era GTPase Era; Provisional
Probab=96.67 E-value=0.019 Score=50.97 Aligned_cols=66 Identities=8% Similarity=0.089 Sum_probs=40.2
Q ss_pred CCccEEEEcCCCCCCcc-c----h---hhhhhccCceEEEeeCCCcchHHHH-HHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDA-Q----L---TTTQTLQLSGALIVSTPQDVALIDA-RKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~-~----~---~~~~l~~ad~viiv~~~~~~s~~~~-~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+++.++++|||+..... . + ....+..||.++++++... ++... ...++.+...+.+.+ +|+|+.|.
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~I-lViNKiDl 172 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPI-FLLNKIDI 172 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEE-EEEEhhcC
Confidence 44668999999642210 0 1 1123557899999887654 33333 345556665666665 79999995
No 220
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.66 E-value=0.0099 Score=58.18 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=48.8
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|||+...........+..+|.+|+|+..+......+...+..+...+.+++ +++|+.|.
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiI-VviNKiDl 401 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPII-VAINKIDK 401 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEE-EEEECccc
Confidence 4678999999755433333445667899999998877656666777777777888855 99999984
No 221
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.65 E-value=0.0038 Score=53.20 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=34.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
-.+.++.+..|+|||+++.+++...++ +|.+|++|+++.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecC
Confidence 345555799999999999999999999 999999999984
No 222
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.65 E-value=0.0099 Score=47.77 Aligned_cols=37 Identities=30% Similarity=0.297 Sum_probs=30.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+.++.+ .-.|.||||.|..+|...+. +|.+|++|-+=
T Consensus 23 g~v~v~--~g~GkGKtt~a~g~a~ra~g-~G~~V~ivQFl 59 (191)
T PRK05986 23 GLLIVH--TGNGKGKSTAAFGMALRAVG-HGKKVGVVQFI 59 (191)
T ss_pred CeEEEE--CCCCCChHHHHHHHHHHHHH-CCCeEEEEEEe
Confidence 344444 77899999999999999999 99999999654
No 223
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.63 E-value=0.045 Score=44.06 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=40.6
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC--CCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
.+.+-|+|+++..............+|.++++...+. .++......++.+... +.++ .+|.|+.+.
T Consensus 49 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl 117 (193)
T cd04118 49 VVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKI-YLCGTKSDL 117 (193)
T ss_pred EEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCE-EEEEEcccc
Confidence 3556788998643322222333447898888887643 4566655566665543 3454 599999984
No 224
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.62 E-value=0.032 Score=43.38 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=43.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhcCC--CCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKVQ--VPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++..+. ..++..+...+..+.... ...+.+|.|+.+.
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 4566889999865332222233445689888888765 446777776666665543 1234589999884
No 225
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.62 E-value=0.021 Score=44.40 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=41.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...+.. ++..+...+..+.. .+.+ +.+|.|+.+.
T Consensus 47 ~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~ 117 (161)
T cd04113 47 KRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDL 117 (161)
T ss_pred EEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhc
Confidence 457789999996433222334445678888888877653 45555555554432 3444 4599999985
No 226
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.61 E-value=0.01 Score=56.60 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=45.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..|.+.|+|||+..+........+..+|.+|+|++....--......+..+...+.+++ +|+|+.|.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiI-vViNKiDl 138 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEII-PVLNKIDL 138 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCC
Confidence 46889999999755433333455678999999998866433334444444455677754 99999994
No 227
>PRK12735 elongation factor Tu; Reviewed
Probab=96.61 E-value=0.024 Score=51.43 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=48.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+...++++|||+...........+..+|.+++++.....-...+.+.+..+...+.+.+.+++|+.|.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCC
Confidence 44568999999643221223455667899999988876545566677777777888876678999995
No 228
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.61 E-value=0.02 Score=49.90 Aligned_cols=44 Identities=25% Similarity=0.152 Sum_probs=37.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~ 76 (295)
++++.++ +.--+||||++.-|-.+..+ .|++++.+|+|+++++.
T Consensus 103 GPrv~vV-Gp~d~GKsTl~r~L~nyavk-~gr~Plfv~LDvgQ~si 146 (415)
T KOG2749|consen 103 GPRVMVV-GPTDVGKSTLCRILLNYAVK-QGRRPLFVELDVGQGSI 146 (415)
T ss_pred CCEEEEE-CCCccchHHHHHHHHHHHHH-cCCcceEEEcCCCCCce
Confidence 4555554 45579999999999999999 89999999999999864
No 229
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.61 E-value=0.13 Score=41.76 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=43.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhc-------CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSK-------VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~-------~~~~~~~~ViN~~~~ 205 (295)
..+.+.|.|+++......+....+..+|.+|++.+.. ..++..+....+.+.. .+.|+ .+|.|+.|.
T Consensus 48 ~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~pi-ilv~NK~Dl 122 (201)
T cd04107 48 TVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPC-LLLANKCDL 122 (201)
T ss_pred CEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcE-EEEEECCCc
Confidence 5678899999975432233344456789888887765 4566766655555432 23444 599999985
No 230
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.61 E-value=0.0045 Score=59.64 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=46.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.++|+|||+...........+..+|.+++|+.........+.+.+..+...+.+.+.+++|+.|.
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~ 169 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDL 169 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccc
Confidence 56789999999643211223445678899999988866544445555666666676666689999985
No 231
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.60 E-value=0.026 Score=44.87 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=39.8
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
.|.+.|+|+|+...........+..++.++++...+. .++..+....+.+.+ .+.+. .+|.|+.+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl 118 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI-VLVGNKSDL 118 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEEchhh
Confidence 4778999998643322222334445777777765544 456666555554433 24455 499999985
No 232
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.59 E-value=0.0069 Score=57.89 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=48.8
Q ss_pred ccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 140 yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.-+.|+|||+.-.........+..+|.+++|+..+..-...+...+..+...+.+.+.+|+|+.|.
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADR 116 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 447899999643321223445667899999999887666777777888877888876699999984
No 233
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.57 E-value=0.0037 Score=50.08 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=33.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
|+| ++..|+||||+|..|+..+.. .|.++.+|..|-..
T Consensus 2 i~i-~G~sgsGKttla~~l~~~l~~-~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGI-AGPSGSGKTTFAKKLSNQLRV-NGIGPVVISLDDYY 39 (179)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHH-cCCCEEEEehhhcc
Confidence 444 589999999999999999999 89999999988654
No 234
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.55 E-value=0.032 Score=43.59 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=41.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhcCC--CCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKVQ--VPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..++.++++.... ..++..+.+.+..+.+.. ...+.+|.|+.+.
T Consensus 50 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 50 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 3467889999864332223334445678777776654 456666666666554432 1334589999984
No 235
>PF13479 AAA_24: AAA domain
Probab=96.54 E-value=0.015 Score=47.99 Aligned_cols=29 Identities=31% Similarity=0.340 Sum_probs=23.4
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.++-+..|+||||++..+ .++++||+|..
T Consensus 6 ~lIyG~~G~GKTt~a~~~---------~k~l~id~E~g 34 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL---------PKPLFIDTENG 34 (213)
T ss_pred EEEECCCCCCHHHHHHhC---------CCeEEEEeCCC
Confidence 334499999999988865 59999999965
No 236
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.54 E-value=0.054 Score=43.46 Aligned_cols=68 Identities=16% Similarity=0.077 Sum_probs=43.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcCC--CCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQ--VPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~--~~~~~~ViN~~~~ 205 (295)
..+.+.+.|+++...........+..+|.++++.+.+. .++..+...++.+.... ...+.+|.|+.|.
T Consensus 47 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 47 KIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 34678899998654322233445567899998887654 45666666555554421 2345689999984
No 237
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.53 E-value=0.042 Score=43.03 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=42.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcCC--CCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQ--VPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~--~~~~~~ViN~~~~ 205 (295)
..+.+.|.|+|+...........+..+|.+|++.+... .++..+...++.+.... ..++.+|.|+.+.
T Consensus 49 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 49 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 35778999998643322223344557898888877665 45666666665554322 2245589999885
No 238
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.52 E-value=0.031 Score=48.08 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=32.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
..+|.++ +..|+||||+...+...|.. . .++.+|+-|...
T Consensus 104 ~~~v~l~-G~pGsGKTTLl~~l~~~l~~-~-~~~~VI~gD~~t 143 (290)
T PRK10463 104 QLVLNLV-SSPGSGKTTLLTETLMRLKD-S-VPCAVIEGDQQT 143 (290)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhcc-C-CCEEEECCCcCc
Confidence 5788887 66899999999999998876 4 588899888643
No 239
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.52 E-value=0.01 Score=59.02 Aligned_cols=68 Identities=16% Similarity=0.046 Sum_probs=53.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
..|-+-+||||+..+...-...++..+|.+|+|+.....-...+...++.+...+.+.+ +++|++|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i-~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEE-EEEECCccc
Confidence 45667899999866644445667778999999999887666677888888888888876 999999843
No 240
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.51 E-value=0.011 Score=56.22 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=36.5
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
++++|+|++ ..|+||||+...|...|.+ +|+||.+|-.|..
T Consensus 9 ~~~vi~ivG-~s~sGKTTlie~li~~L~~-~G~rVavIKh~~h 49 (597)
T PRK14491 9 SIPLLGFCA-YSGTGKTTLLEQLIPELNQ-RGLRLAVIKHAHH 49 (597)
T ss_pred CccEEEEEc-CCCCCHHHHHHHHHHHHHh-CCceEEEEEcCCc
Confidence 468999985 5899999999999999999 9999999987654
No 241
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.50 E-value=0.0041 Score=48.23 Aligned_cols=37 Identities=35% Similarity=0.277 Sum_probs=32.2
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 36 i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
++.+..|+||||++..|+..+.. .|.+++++|.|...
T Consensus 3 ~i~G~~GsGKSTla~~L~~~l~~-~g~~~~~i~~d~~r 39 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEKLFQ-RGRPVYVLDGDNVR 39 (149)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEEcCHHHH
Confidence 44589999999999999999998 89999999877544
No 242
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.48 E-value=0.005 Score=52.74 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=34.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEeCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVY 72 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D~~ 72 (295)
-+.+..+..|+||||++.+++..++. . |.+|+++.++..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~-~~g~~vl~iS~E~~ 70 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLIT-QHGVRVGTISLEEP 70 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH-hcCceEEEEEcccC
Confidence 35556799999999999999999998 6 999999999753
No 243
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.47 E-value=0.013 Score=55.97 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=44.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..|.+.|+|||+...........+..||.++++.+.....-......+..+...+.++ .+|+|+.|.
T Consensus 68 ~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipi-IiViNKiDl 134 (595)
T TIGR01393 68 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEI-IPVINKIDL 134 (595)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCE-EEEEECcCC
Confidence 4588999999976553333445577899999999887643223333333333456665 499999994
No 244
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.47 E-value=0.084 Score=43.76 Aligned_cols=65 Identities=20% Similarity=0.086 Sum_probs=42.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhc-cCceEEEeeCCCc-chHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTL-QLSGALIVSTPQD-VALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~-~ad~viiv~~~~~-~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+++... ......+. .+|.+++|...+. .++..+...+..+.+. +.|+ .+|.|+.|.
T Consensus 48 ~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~pi-ilV~NK~Dl 118 (221)
T cd04148 48 EESTLVVIDHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPI-ILVGNKSDL 118 (221)
T ss_pred EEEEEEEEeCCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEEChhc
Confidence 457789999986541 22222233 6899988877654 4666666666666542 3444 599999984
No 245
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=96.46 E-value=0.012 Score=45.84 Aligned_cols=93 Identities=12% Similarity=0.074 Sum_probs=57.8
Q ss_pred CCccEEEEcCCCCCCccc------hhhhhh--ccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQ------LTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPH 209 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~------~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~ 209 (295)
.+..+.++|+|+-.+... .+...+ ...|.++.|+++.. ++.-..+..++.+.+.|.+ +++||+|.-...
T Consensus 45 ~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~v-vvlN~~D~a~~~ 121 (156)
T PF02421_consen 45 GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVV-VVLNKMDEAERK 121 (156)
T ss_dssp TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEE-EEEETHHHHHHT
T ss_pred cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEE-EEEeCHHHHHHc
Confidence 458899999997444221 122222 36789999988876 4555667778888898886 999999842111
Q ss_pred CCCCccccCCchhhHHHHHhCCcEEEeecCC
Q 022525 210 CSEPSFIFGKGGTHRTAAEMGLKVIGEIPIE 240 (295)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~ 240 (295)
--....+.+.+.+|.+++......
T Consensus 122 -------g~~id~~~Ls~~Lg~pvi~~sa~~ 145 (156)
T PF02421_consen 122 -------GIEIDAEKLSERLGVPVIPVSART 145 (156)
T ss_dssp -------TEEE-HHHHHHHHTS-EEEEBTTT
T ss_pred -------CCEECHHHHHHHhCCCEEEEEeCC
Confidence 011237788888999887655543
No 246
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=96.44 E-value=0.0071 Score=52.74 Aligned_cols=42 Identities=33% Similarity=0.400 Sum_probs=37.8
Q ss_pred CeEEEEeeCC-CCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGK-GGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~k-GGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+||.|.|-. ||+|||.++.-|+..|.+ +|++|.+|.-.+..
T Consensus 28 vPVIsVGNitvGGTGKTP~v~~La~~l~~-~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 28 VPVVIVGNLSVGGTGKTPVVVWLAELLKD-RGLRVGVLSRGYGS 70 (311)
T ss_pred CCEEEEeccccCCcChHHHHHHHHHHHHH-CCCEEEEECCCCCC
Confidence 5899999988 999999999999999999 99999999766544
No 247
>PF13245 AAA_19: Part of AAA domain
Probab=96.44 E-value=0.008 Score=40.76 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=28.5
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhC----CCeEEEEE
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKC----QLKVGLLD 68 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~----g~~VlliD 68 (295)
+.++.+-.|+|||++++++...+.. . +.+|+++-
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~-~~~~~~~~vlv~a 49 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLA-ARADPGKRVLVLA 49 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-HhcCCCCeEEEEC
Confidence 4555789999999999999999886 5 88999983
No 248
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.43 E-value=0.034 Score=44.86 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=41.7
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.+|++.+.+. .++..+...+..+.+. +.++ .+|.|+.+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pi-iiv~NK~Dl 118 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVI-MLLGNKADM 118 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE-EEEEEcccc
Confidence 4568899999753321223334556888888887654 3566666656555543 3444 589999985
No 249
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.42 E-value=0.014 Score=53.52 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=43.4
Q ss_pred CCccEEEEcCCCCCCcc--------chhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDA--------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~--------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+..+.|+|||+..... ......+..+|.+++|++....-........+++++.+.+++ +|+|+.+.
T Consensus 45 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~pii-lVvNK~D~ 119 (429)
T TIGR03594 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVI-LVANKIDG 119 (429)
T ss_pred CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEE-EEEECccC
Confidence 34568999998532110 112334567899999988876433344556667776676665 89999984
No 250
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.41 E-value=0.012 Score=57.11 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=48.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.++|||+...........+..+|.+++|+..+......+...+..+...+.|++ +++|+.|.
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiI-VViNKiDl 359 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPII-VAINKIDK 359 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEE-EEEECCCc
Confidence 35789999999643322233345668999999998776555566677777777787765 99999984
No 251
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.41 E-value=0.041 Score=50.47 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=43.2
Q ss_pred CccEEEEcCCCCCCcc-------c----hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDA-------Q----LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~-------~----~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+..++++|||+..... . .+...+..+|.+++|.+..........+.+..+.+.+.+++ +|+|+.|.
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~ii-iv~NK~Dl 295 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALV-IVVNKWDL 295 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEE-EEEECccc
Confidence 3468999999532110 0 11234567999999988876544444556666666676665 99999984
No 252
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.39 E-value=0.047 Score=42.64 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=41.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
+.+.+.++|+|+...........+..+|.++++...... ++......+..+.+ .+.|+ .+|+|+.+.
T Consensus 48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~D~ 119 (167)
T cd04160 48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPL-LILANKQDL 119 (167)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCE-EEEEEcccc
Confidence 457899999996433222333446678988888876543 34444444444332 34565 499999984
No 253
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.39 E-value=0.006 Score=51.61 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=35.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~ 74 (295)
+|+| .+..|+||||++..|+..|.. .|.+|.+|+.|.-..
T Consensus 1 IIgI-tG~SGSGKTTv~~~l~~~l~~-~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAV-TGSSGAGTTTVKRAFEHIFAR-EGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEE-ECCCCCCHHHHHHHHHHHHHh-cCCceEEEecccccc
Confidence 4667 478899999999999999999 899999999997764
No 254
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.38 E-value=0.0068 Score=53.17 Aligned_cols=42 Identities=33% Similarity=0.432 Sum_probs=36.9
Q ss_pred CeEEEEeeC-CCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASG-KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~-kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+||+|.|- -||+|||+++..|+..|.+ +|++|.+|--.+..
T Consensus 49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~-~g~~~~ilsRGYg~ 91 (325)
T PRK00652 49 VPVIVVGNITVGGTGKTPVVIALAEQLQA-RGLKPGVVSRGYGG 91 (325)
T ss_pred CCEEEEcCeeCCCCChHHHHHHHHHHHHH-CCCeEEEECCCCCC
Confidence 479999776 5999999999999999999 99999999777644
No 255
>PLN00023 GTP-binding protein; Provisional
Probab=96.38 E-value=0.28 Score=43.03 Aligned_cols=94 Identities=10% Similarity=-0.033 Sum_probs=53.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcCC--------------CCeeeEEecc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQ--------------VPILGLVENM 202 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~--------------~~~~~~ViN~ 202 (295)
..+.+-|.|+++.-....+...-...+|.+|+|...+. .++..+...++.+.... ...+.+|.|+
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 45778999999653322232333557888888876544 56667766666665431 1235699999
Q ss_pred ccCCCCCCCCCccccCCchhhHHHHHhCC
Q 022525 203 SCFICPHCSEPSFIFGKGGTHRTAAEMGL 231 (295)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 231 (295)
.|...............+..++++++.|.
T Consensus 161 ~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 161 ADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred ccccccccccccccccHHHHHHHHHHcCC
Confidence 99632110000000123557777777763
No 256
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=96.37 E-value=0.032 Score=43.18 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=42.9
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
.+++.++|+|+...........+..+|.++++..+... ++..+...+..+.+ .+.++ .+|.|+.+.
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~ 112 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPL-LIFANKQDL 112 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE-EEEeeccCC
Confidence 47799999997544223334455678999999888765 55555554444333 24444 488999984
No 257
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=96.36 E-value=0.062 Score=46.37 Aligned_cols=166 Identities=17% Similarity=0.230 Sum_probs=94.7
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.+++|.+++.---+||-|++..|...+.+ +|.++..+-...++ - +. .. .+ .-++.++
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~-~G~~a~fvaTGQTG-i---mi-a~--~G------------v~iDav~--- 167 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRE-RGINAGFVATGQTG-I---MI-AG--YG------------VPIDAVP--- 167 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHH-TT--EEEEE-SHHH-H---HC-HS--EC--------------GGGSB---
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHH-cCCCceEEecCCce-E---EE-ec--CC------------eeccchh---
Confidence 47999999999999999999999999999 99999998655433 1 11 00 00 0011111
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch---hhhhhc--cCceEEEeeCCCcc--------
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL---TTTQTL--QLSGALIVSTPQDV-------- 176 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~---~~~~l~--~ad~viiv~~~~~~-------- 176 (295)
..+..-.+..+..... ++.|+|||...+++....+ +...|. .-|.+|+.-.|...
T Consensus 168 -----------~DFvaGavE~~v~~~~-~~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~ 235 (301)
T PF07755_consen 168 -----------SDFVAGAVEALVPEAA-EEHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHY 235 (301)
T ss_dssp -----------GGGHHHHHHHHHHHHC-CC-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTS
T ss_pred -----------hhhHHHHHHHHHHhhC-cCCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcC
Confidence 2234556677666665 3669999999988764332 223333 34888888888332
Q ss_pred hHHHHHHHHHHHhcCC-----CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeec
Q 022525 177 ALIDARKGITMFSKVQ-----VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIP 238 (295)
Q Consensus 177 s~~~~~~~~~~l~~~~-----~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip 238 (295)
.+....+.++.++... .+++|+-+|-.... . .-.+...+++.+++|+|+.-.+.
T Consensus 236 ~ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~------~--~e~~~~~~~~~~e~glPv~Dp~r 294 (301)
T PF07755_consen 236 PIPPLEEEIELIEALAGTKPPAKVVGISLNTSGLS------E--EEAKAAIERIEEELGLPVTDPLR 294 (301)
T ss_dssp C---HHHHHHHHHHCCCGC---EEEEEECC-TTS-------H--HHHHHHHHHHHHHH-S-EE-HHH
T ss_pred CCCCHHHHHHHHHHhhccCCCccEEEEEEECCCCC------H--HHHHHHHHHHHHHHCCCeeeccc
Confidence 3455566666666543 23788888875521 0 11124577888889988875444
No 258
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.36 E-value=0.021 Score=53.06 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=42.8
Q ss_pred CCccEEEEcCCCCCCcc--------chhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDA--------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~--------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+..+.|+|||+-.... ......+..||.+|+|.+........-....+++.+.+.+++ +|+|+.+.
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~pii-lV~NK~Dl 158 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVI-LAANKVDD 158 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECccC
Confidence 44568899998532110 012234557999999998876433333456666666666665 99999984
No 259
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.35 E-value=0.031 Score=43.54 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=42.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC--CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
....+.+.|+|+...........+..+|.++++...+. .++..+...++.+... +.+. .+|.|+.+.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 119 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPG-VLVGNKMDL 119 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECccc
Confidence 45778999998533222333445567899998887754 3455555555555443 3444 589999984
No 260
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=96.33 E-value=0.024 Score=44.89 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=43.7
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
.+.+.|.|+|+...........+..+|.+++|.+... .++......+..+.+. ...++.+|.|+.+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 4668899999644322334445668899999988744 4666666666554332 22345699999984
No 261
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.33 E-value=0.0066 Score=51.00 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=34.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEeCCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG 73 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D~~~ 73 (295)
-+.+.++..|+|||+++.+++..++. . |.+|+.+.++...
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~~~ 54 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEMSK 54 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCCCH
Confidence 34555799999999999999999998 6 9999999988744
No 262
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.31 E-value=0.016 Score=45.92 Aligned_cols=41 Identities=27% Similarity=0.351 Sum_probs=35.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+++++|+ +..|+||||+...|...|.. +|.+|..|-.+...
T Consensus 6 ~~ii~iv-G~sgsGKTTLi~~li~~l~~-~g~~vg~Ik~~~~~ 46 (173)
T PRK10751 6 IPLLAIA-AWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHD 46 (173)
T ss_pred ceEEEEE-CCCCChHHHHHHHHHHHHhh-cCCeEEEEEEcCCC
Confidence 5677776 67899999999999999999 99999999876543
No 263
>PRK04328 hypothetical protein; Provisional
Probab=96.29 E-value=0.011 Score=50.04 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=34.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+.++.| .+..|+|||+++.++++..++ .|.++++|+++...
T Consensus 23 gs~ili-~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~ 63 (249)
T PRK04328 23 RNVVLL-SGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHP 63 (249)
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCH
Confidence 455555 467779999999999999888 89999999998644
No 264
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.28 E-value=0.0058 Score=51.73 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=31.9
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.++.+-.|+||||+|..|+..+.. .|.+|.++|.|.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~-~~~~v~~i~~D~ 37 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE-KNIDVIILGTDL 37 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-cCCceEEEccHH
Confidence 355689999999999999999999 899999998774
No 265
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.25 E-value=0.0097 Score=56.63 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=47.6
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+.-.........+..+|.+++|++.+......+...+..+...+.+.+.+|+|+.|.
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADR 115 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCC
Confidence 3678999999643221223444567899999999887555566666677777788855699999984
No 266
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.24 E-value=0.019 Score=44.98 Aligned_cols=65 Identities=17% Similarity=0.010 Sum_probs=40.2
Q ss_pred ccEEEEcCCCCCCcc----ch---hhhhhccCceEEEeeCCCcc--hHHHHHHHHHHHhcC-----CCCeeeEEeccccC
Q 022525 140 LDILVIDMPPGTGDA----QL---TTTQTLQLSGALIVSTPQDV--ALIDARKGITMFSKV-----QVPILGLVENMSCF 205 (295)
Q Consensus 140 yD~iiiD~~~~~~~~----~~---~~~~l~~ad~viiv~~~~~~--s~~~~~~~~~~l~~~-----~~~~~~~ViN~~~~ 205 (295)
..+.++|+|+-.... .+ ....+..+|.++++...... ++......++.+... +.++ .+|+|+.+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~NK~Dl 126 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPR-IVVLNKIDL 126 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCcccccccc-EEEEEchhc
Confidence 378999999632110 01 11223458999999888764 556666555555432 3444 489999984
No 267
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.21 E-value=0.076 Score=41.67 Aligned_cols=67 Identities=10% Similarity=-0.000 Sum_probs=39.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhc-------CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSK-------VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~-------~~~~~~~~ViN~~~~ 205 (295)
..+.+.|.|+|+......+....+..+|.++++...+ ..++..+...+..+.. .+.|+ .+|.|+.+.
T Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 126 (170)
T cd04116 52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPF-VVLGNKNDI 126 (170)
T ss_pred eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcE-EEEEECccc
Confidence 4467889999864332223333455788888876654 3456665554443322 23444 489999984
No 268
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.20 E-value=0.012 Score=46.01 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=46.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+++.++|||+...........+..+|.++++..++..........+..+...+.+++ +|+|+.+.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl 114 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFI-VALNKIDK 114 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEEceec
Confidence 57899999999643321222334567899999998876444455555666666777764 89999984
No 269
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.20 E-value=0.0079 Score=48.59 Aligned_cols=41 Identities=29% Similarity=0.333 Sum_probs=30.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHh---------CCCeEEEEEeCCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASK---------CQLKVGLLDADVYG 73 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~---------~g~~VlliD~D~~~ 73 (295)
-+.++.+.+|+||||++.+++..++.- .+.+|++|+++...
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 366667999999999999999999961 35799999999764
No 270
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.17 Score=43.64 Aligned_cols=172 Identities=19% Similarity=0.201 Sum_probs=104.2
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
..++|.+.+..--|||=|++..|...+.. .|+++..+-.++.+ -+ . .+ .++ -++-+
T Consensus 147 ~a~~V~vvGTd~~vGKrTTa~~L~~~~~e-~G~~a~fvaTgqtg-il---~-~~--~gv------------vvdav---- 202 (339)
T COG3367 147 DAKVVLVVGTDCAVGKRTTALELREAARE-EGIKAGFVATGQTG-IL---I-AD--DGV------------VVDAV---- 202 (339)
T ss_pred CCcEEEEeccccccchhHHHHHHHHHHHH-hCCccceEecCcee-eE---E-ec--Cce------------Eecch----
Confidence 36899999999999999999999999999 99999988666443 11 1 00 000 00000
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccc----hhhhhhccCceEEEeeCCCcchHH------
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ----LTTTQTLQLSGALIVSTPQDVALI------ 179 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~----~~~~~l~~ad~viiv~~~~~~s~~------ 179 (295)
...+.+..+..+.-.+...++|+|+|...+++.... +.+..-...|.+++.-.|+...+.
T Consensus 203 ----------~~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P~~i 272 (339)
T COG3367 203 ----------VMDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFPEPI 272 (339)
T ss_pred ----------hHHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCCCcC
Confidence 011223344444444442499999999988765433 222222345889998888775433
Q ss_pred -HHHHHHHHHhc-CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccc
Q 022525 180 -DARKGITMFSK-VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDI 243 (295)
Q Consensus 180 -~~~~~~~~l~~-~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~ 243 (295)
.....+...+. .+.+++++.+|--+.. . ...++..+++..++|+++...+.+.+++
T Consensus 273 p~leevi~l~e~l~~a~Vvgi~lNtr~~d------E--~~are~~a~l~~efglP~~Dp~~~~~d~ 330 (339)
T COG3367 273 PPLEEVIALYELLSNAKVVGIALNTRNLD------E--EEARELCAKLEAEFGLPVTDPLRFGEDV 330 (339)
T ss_pred CCHHHHHHHHHHccCCcEEEEEecccccC------h--HHHHHHHHHHhhccCCccccccccchHH
Confidence 22333333333 2478889999864421 1 1113446666677787777666665553
No 271
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.18 E-value=0.013 Score=48.14 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=31.6
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+.+|+| ++..|+||||++..|+..+ .+..+.+++.|...
T Consensus 5 ~~~iI~I-~G~sGsGKTTl~~~l~~~l---~~~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGI-AGGSGSGKTTVASTIYEEL---GDESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEE-ECCCCCCHHHHHHHHHHHh---CCCceEEEeCCccc
Confidence 3567777 5899999999999999887 34578889888643
No 272
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.16 E-value=0.015 Score=50.82 Aligned_cols=41 Identities=22% Similarity=0.153 Sum_probs=31.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEEeCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY 72 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~-----~g~~VlliD~D~~ 72 (295)
-.|.-..+..|+|||+++..++...+.. .+.+|+.||....
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 4566667999999999999999765520 3579999998854
No 273
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.12 E-value=0.017 Score=56.17 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=34.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
-.|....+..|+||||++.+++...+. .|.+|++||....-
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~-~G~~v~yId~E~t~ 100 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEHAL 100 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccch
Confidence 345555689999999999999999888 99999999987654
No 274
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.12 E-value=0.066 Score=42.76 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=30.0
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
|.+.++==|+||||+-.+|.. ... .|.++.+|-.|...
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~-~~~~~~vI~ne~g~ 39 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNR-QGERVAVIVNEFGE 39 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHT-TTS-EEEEECSTTS
T ss_pred EEEEEcCCCCCHHHHHHHHHH-Hhc-CCceeEEEEccccc
Confidence 345567789999999999998 555 89999999888764
No 275
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.11 E-value=0.1 Score=41.21 Aligned_cols=66 Identities=9% Similarity=0.049 Sum_probs=40.2
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
.+.+.++|+|+...........+..+|.+++|...... ++......+..+.+ .+.++ .+|.|+.|.
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl 127 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATL-LILANKQDL 127 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCE-EEEEECccc
Confidence 46789999996432112223345578988888776654 45555444443322 34454 499999984
No 276
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.11 E-value=0.0079 Score=52.98 Aligned_cols=40 Identities=30% Similarity=0.311 Sum_probs=34.2
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~ 74 (295)
.+..+-.|+||||++..|+..|....|.+|.++|.|-.-+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 4566889999999999999999832899999999997654
No 277
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.10 E-value=0.064 Score=49.31 Aligned_cols=67 Identities=10% Similarity=-0.026 Sum_probs=44.9
Q ss_pred CCccEEEEcCCCCCCcc-----------chhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDA-----------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~-----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
++.++.++|||+..... ..+...+..+|.+++|.+...............+.+.+.+.+ +|+|+.|.
T Consensus 219 ~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~i-vv~NK~Dl 296 (435)
T PRK00093 219 DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALV-IVVNKWDL 296 (435)
T ss_pred CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEE-EEEECccC
Confidence 45678999999632110 012334567899999998877544555566666666676665 99999984
No 278
>PLN03118 Rab family protein; Provisional
Probab=96.09 E-value=0.11 Score=42.65 Aligned_cols=67 Identities=13% Similarity=0.009 Sum_probs=39.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHH-HHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGIT-MFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~-~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+|++.+.+. .++..+..... .+.. .+.++ .+|.|+.+.
T Consensus 60 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~-ilv~NK~Dl 132 (211)
T PLN03118 60 KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK-MLVGNKVDR 132 (211)
T ss_pred EEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 34678999999754432333444557898888877654 34555544322 2221 22344 488999984
No 279
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.09 E-value=0.099 Score=41.14 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=41.7
Q ss_pred CCccEEEEcCCCCCCcc-chhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDA-QLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~-~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+++..... ......+..+|.++++...+. .++..+...++.+... +.|+ .+|.|+.+.
T Consensus 49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl 121 (170)
T cd04115 49 ERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPR-ILVGNKCDL 121 (170)
T ss_pred eEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 45788999998643211 112223446788888877754 4566666666555542 3455 499999984
No 280
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.07 E-value=0.0089 Score=47.82 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=29.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
++-+.++| ..|+|||.+|..+|..+.+ .|++|+.+++.
T Consensus 47 ~~~l~l~G-~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~ 84 (178)
T PF01695_consen 47 GENLILYG-PPGTGKTHLAVAIANEAIR-KGYSVLFITAS 84 (178)
T ss_dssp --EEEEEE-STTSSHHHHHHHHHHHHHH-TT--EEEEEHH
T ss_pred CeEEEEEh-hHhHHHHHHHHHHHHHhcc-CCcceeEeecC
Confidence 35566654 6899999999999999999 99999999654
No 281
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.06 E-value=0.041 Score=44.80 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=36.6
Q ss_pred CccEEEEcCCCCCCcc-c-----h--hhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDA-Q-----L--TTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~-~-----~--~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
.+.++|+|+|+..... . + .......+|.++++...... +........+.+... +.+ +.+|+|+.|.
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl 165 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDL 165 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEcccc
Confidence 3478999998642210 0 0 11123468988888876543 333333333444332 334 4599999984
No 282
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.05 E-value=0.14 Score=40.59 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=24.6
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
.++.+..|+|||++|..++.. .|.++++++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEcc
Confidence 355688999999999988753 57789888443
No 283
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.05 E-value=0.016 Score=46.08 Aligned_cols=39 Identities=36% Similarity=0.297 Sum_probs=32.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+|.| .+-.|+||||++..|+..|.. .+..+.++|.|.
T Consensus 7 ~~~I~i-~G~~GsGKst~a~~l~~~l~~-~~~~~~~~~~d~ 45 (176)
T PRK05541 7 GYVIWI-TGLAGSGKTTIAKALYERLKL-KYSNVIYLDGDE 45 (176)
T ss_pred CCEEEE-EcCCCCCHHHHHHHHHHHHHH-cCCcEEEEecHH
Confidence 466666 588899999999999999998 888888887553
No 284
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.05 E-value=0.013 Score=49.90 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=34.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D~~~ 73 (295)
.-+.+.++..|+|||+++.++|..++. . |.+|+++.++...
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~-~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAAL-NGGYPVLYFSLEMSE 60 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHH-TTSSEEEEEESSS-H
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHH-hcCCeEEEEcCCCCH
Confidence 345566799999999999999999999 6 6999999988654
No 285
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.04 E-value=0.012 Score=51.45 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=33.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++++-|+ +..|+||||++.+++...++ .|.+|++||+..
T Consensus 55 G~iteI~-Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~ 93 (325)
T cd00983 55 GRIIEIY-GPESSGKTTLALHAIAEAQK-LGGTVAFIDAEH 93 (325)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCCEEEECccc
Confidence 3555554 68999999999999999999 999999999864
No 286
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.03 E-value=0.016 Score=46.59 Aligned_cols=40 Identities=40% Similarity=0.379 Sum_probs=33.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.+|.+. +..|+||||++..|+..+.. .|..++++|.|.-
T Consensus 18 ~~~i~i~-G~~GsGKstla~~l~~~l~~-~~~~~~~l~~d~~ 57 (184)
T TIGR00455 18 GVVIWLT-GLSGSGKSTIANALEKKLES-KGYRVYVLDGDNV 57 (184)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCcEEEECChHH
Confidence 5666664 77799999999999999988 8988999987753
No 287
>PHA00729 NTP-binding motif containing protein
Probab=96.02 E-value=0.015 Score=48.05 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=20.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALAS 58 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~ 58 (295)
..|.|+ +..|+||||+|..||..+..
T Consensus 18 ~nIlIt-G~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIF-GKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHh
Confidence 345554 67899999999999998763
No 288
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.01 E-value=0.012 Score=51.06 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=79.4
Q ss_pred EEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCch
Q 022525 142 ILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGG 221 (295)
Q Consensus 142 ~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~ 221 (295)
|-=+|||+..+-.--.+......|..|+|+......+..+.+.+-..++.|++-+.+.+|+++..... ....+-.-+
T Consensus 119 YaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~---e~leLVEmE 195 (449)
T KOG0460|consen 119 YAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDP---EMLELVEME 195 (449)
T ss_pred cccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCH---HHHHHHHHH
Confidence 44579997665211123334457999999999999999999999999999999999999999843111 111111123
Q ss_pred hhHHHHHhCCcEE--EeecCCccccccccCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 022525 222 THRTAAEMGLKVI--GEIPIEMDIRKGSDDGVPVVISAPDSTVSRAYGEVAVNVVNRLQELAKEQEHPES 289 (295)
Q Consensus 222 ~~~~~~~~g~~~~--~~Ip~~~~~~~a~~~g~~i~~~~~~s~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 289 (295)
+++++..+|.+=. ++|.-+.. +.-+|+. | ....+++.+|.+.+-+.+-...++-++|++
T Consensus 196 ~RElLse~gf~Gd~~PvI~GSAL---~ALeg~~-----p-eig~~aI~kLldavDsyip~P~R~~~~pFl 256 (449)
T KOG0460|consen 196 IRELLSEFGFDGDNTPVIRGSAL---CALEGRQ-----P-EIGLEAIEKLLDAVDSYIPTPERDLDKPFL 256 (449)
T ss_pred HHHHHHHcCCCCCCCCeeecchh---hhhcCCC-----c-cccHHHHHHHHHHHhccCCCcccccCCCce
Confidence 6677777775422 23322221 1223321 1 123455666666665555444444444544
No 289
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.98 E-value=0.013 Score=49.75 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=30.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
+-+.+ .++.|||||.+++.+|..+.+ .|.+|+++.
T Consensus 106 ~nl~l-~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~ 140 (254)
T COG1484 106 ENLVL-LGPPGVGKTHLAIAIGNELLK-AGISVLFIT 140 (254)
T ss_pred CcEEE-ECCCCCcHHHHHHHHHHHHHH-cCCeEEEEE
Confidence 44555 499999999999999999998 999999993
No 290
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=95.97 E-value=0.32 Score=40.51 Aligned_cols=186 Identities=14% Similarity=0.086 Sum_probs=97.6
Q ss_pred eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcc--------------ccccCcccccccCCce
Q 022525 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE--------------VTKDMKMVPIENYGVK 103 (295)
Q Consensus 38 s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~--------------~~~~~~~~~~~~~~~~ 103 (295)
+--.|.||-.+|+.++..|.. +|.+|..+-+||-- +...-.-.+-+++ +....+..........
T Consensus 8 gv~s~lgkgi~~as~g~ll~~-~g~~v~~~K~DpYl-Nvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l~~~~ 85 (255)
T cd03113 8 GVVSSLGKGITAASLGRLLKA-RGLKVTAQKLDPYL-NVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNLSRDN 85 (255)
T ss_pred CcccCcchHHHHHHHHHHHHH-CCCeEEEEeecccc-cCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCCcCcc
Confidence 345678999999999999999 99999999999854 2111100000100 0000111110000000
Q ss_pred eeccc-------------cccCCCCCCccCCchHHHHHHHHHHhcc-CCCccEEEEcCCCCCCccch-----hhhhh---
Q 022525 104 CMSMG-------------FLVPSSSPVVWRGPMVMSALRKMSREVD-WGNLDILVIDMPPGTGDAQL-----TTTQT--- 161 (295)
Q Consensus 104 ~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~yD~iiiD~~~~~~~~~~-----~~~~l--- 161 (295)
.+..| .+..... .--+...+.+++.+..+. ...+|++|+..++..++-.- ++..+
T Consensus 86 niTtGkiy~~vi~kER~G~ylG~TV---QviPHit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~ 162 (255)
T cd03113 86 NITTGKIYSSVIEKERRGDYLGKTV---QVIPHITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLE 162 (255)
T ss_pred CcChHHHHHHHHHHhhccCccCceE---EECcCccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHHHHHHH
Confidence 00111 0000000 001123456666666554 26899999999987774311 00000
Q ss_pred ------ccCceEEEeeC--CCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcE
Q 022525 162 ------LQLSGALIVST--PQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKV 233 (295)
Q Consensus 162 ------~~ad~viiv~~--~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 233 (295)
......++|.. ....--..++..++.++..|+++.++|+|.-++ ......+.+..-.+++.
T Consensus 163 ~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~p-----------L~e~~keKIAlFcnVpv 231 (255)
T cd03113 163 LGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKP-----------LPPEIREKIALFCDVPP 231 (255)
T ss_pred hCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCC-----------CchHHHHHHHHhcCCCH
Confidence 01122233322 244445567788999999999999999997221 11233555555557776
Q ss_pred EEeecC
Q 022525 234 IGEIPI 239 (295)
Q Consensus 234 ~~~Ip~ 239 (295)
.++|+.
T Consensus 232 e~VI~~ 237 (255)
T cd03113 232 EAVISA 237 (255)
T ss_pred HHeeec
Confidence 655553
No 291
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.96 E-value=0.01 Score=48.09 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=30.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCe----EEEEEeCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLK----VGLLDADVY 72 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~----VlliD~D~~ 72 (295)
+|+| ++-.|+||||+|..|+..|.+ .|.. +..+..|..
T Consensus 1 IIgI-~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~ 42 (194)
T PF00485_consen 1 IIGI-AGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDF 42 (194)
T ss_dssp EEEE-EESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGG
T ss_pred CEEE-ECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeeccc
Confidence 4566 588999999999999999998 8876 666666643
No 292
>PRK06526 transposase; Provisional
Probab=95.95 E-value=0.0052 Score=52.09 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=29.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
-+.+ .+..|+|||+++.+++..+.+ .|++|+.+.+
T Consensus 100 nlll-~Gp~GtGKThLa~al~~~a~~-~g~~v~f~t~ 134 (254)
T PRK06526 100 NVVF-LGPPGTGKTHLAIGLGIRACQ-AGHRVLFATA 134 (254)
T ss_pred eEEE-EeCCCCchHHHHHHHHHHHHH-CCCchhhhhH
Confidence 3444 478899999999999999999 9999987533
No 293
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=95.95 E-value=0.1 Score=41.77 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=42.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+..............+|.+|++.+.+. .++......+..+.+. ....+.+|.|+.+.
T Consensus 59 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 130 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130 (182)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCC
Confidence 45779999999643322233344567899999988754 4566665555444221 12334589999984
No 294
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.95 E-value=0.095 Score=41.03 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=37.4
Q ss_pred ccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc-------CCCCeeeEEeccccCC
Q 022525 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK-------VQVPILGLVENMSCFI 206 (295)
Q Consensus 140 yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~-------~~~~~~~~ViN~~~~~ 206 (295)
+-+.++|+|+...........+..+|.+|++..... .++.......+.+.. .+.++ .+|+|+.+..
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~ 122 (172)
T cd01862 49 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPF-VVLGNKIDLE 122 (172)
T ss_pred EEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceE-EEEEECcccc
Confidence 446689998643322233344556898888876653 344444433332221 13455 4899999853
No 295
>PRK05439 pantothenate kinase; Provisional
Probab=95.94 E-value=0.019 Score=49.92 Aligned_cols=41 Identities=37% Similarity=0.393 Sum_probs=34.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC--CCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~--g~~VlliD~D~~~ 73 (295)
+.+|+| ++..|+||||+|..|+..|.+ . |.+|.+|..|-..
T Consensus 86 ~~iIgI-aG~~gsGKSTla~~L~~~l~~-~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 86 PFIIGI-AGSVAVGKSTTARLLQALLSR-WPEHPKVELVTTDGFL 128 (311)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHHHh-hCCCCceEEEeccccc
Confidence 467777 588999999999999999986 4 6789999999654
No 296
>PLN03108 Rab family protein; Provisional
Probab=95.91 E-value=0.31 Score=39.93 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=38.0
Q ss_pred ccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 140 yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
+.+-|+|+++...........+..+|.++++...... ++..+...+..+.. ...++ .+|.|+.+.
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~pi-iiv~nK~Dl 123 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDL 123 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECccC
Confidence 4567889986443222333445568888888776543 45544444443332 23444 489999884
No 297
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=95.88 E-value=0.15 Score=40.85 Aligned_cols=67 Identities=7% Similarity=-0.044 Sum_probs=41.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC--CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
..+.+.|.|+++.-.........+..+|.++++.+.+. .++..+...++.+.+. ...++ +|.|+.|.
T Consensus 47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pi-lVgnK~Dl 116 (182)
T cd04128 47 TEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVGTKYDL 116 (182)
T ss_pred EEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEEchhc
Confidence 34778899998643322222233457888888777544 4677766666666542 22233 78999985
No 298
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.88 E-value=0.12 Score=40.21 Aligned_cols=68 Identities=9% Similarity=0.062 Sum_probs=41.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcC-------CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKV-------QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~-------~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|||+.-.........+..+|.+|++.+.+.. ++......+..+.+. ....+.+|.|+.+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 567889999996432222223334578999999877643 455555555544432 12345699999984
No 299
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=95.88 E-value=0.19 Score=38.85 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=41.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.++|+|+...........+..+|.++++.+... .++......+..+.+ .+.++ .+|.|+.+.
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~-~iv~nK~D~ 118 (161)
T cd01863 47 KKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVK-MLVGNKIDK 118 (161)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcE-EEEEECCcc
Confidence 45778999999743322233344557899888887664 345555554444433 23444 489999884
No 300
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.86 E-value=0.16 Score=39.86 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=37.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHh----cCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFS----KVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~----~~~~~~~~~ViN~~~~ 205 (295)
..+++.++|+|+...........+..+|.++++.+... .++......+..+. ..+.++ .+++|+.+.
T Consensus 56 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 127 (173)
T cd04155 56 DGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPV-LVFANKQDL 127 (173)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCE-EEEEECCCC
Confidence 45678899998643211122233456788888876654 23444444433332 234555 488899884
No 301
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.84 E-value=0.054 Score=42.05 Aligned_cols=91 Identities=13% Similarity=0.041 Sum_probs=55.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhcCC--CCeeeEEeccccCCCCCCCCCc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKVQ--VPILGLVENMSCFICPHCSEPS 214 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~ViN~~~~~~~~~~~~~ 214 (295)
..+.+-|.|+++..............+|.++++.+.+ ..++..+...+..+.... ..++.+|.|+.+... .
T Consensus 46 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~------~ 119 (162)
T PF00071_consen 46 KPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD------E 119 (162)
T ss_dssp EEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG------G
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc------c
Confidence 5678999999854332223334455788888886544 456777777776665432 345668889988432 1
Q ss_pred cccCCchhhHHHHHhCCcEE
Q 022525 215 FIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 215 ~~~~~~~~~~~~~~~g~~~~ 234 (295)
........+++++.++.++.
T Consensus 120 ~~v~~~~~~~~~~~~~~~~~ 139 (162)
T PF00071_consen 120 REVSVEEAQEFAKELGVPYF 139 (162)
T ss_dssp SSSCHHHHHHHHHHTTSEEE
T ss_pred ccchhhHHHHHHHHhCCEEE
Confidence 12222346667777775544
No 302
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.84 E-value=0.055 Score=42.94 Aligned_cols=41 Identities=12% Similarity=-0.110 Sum_probs=32.4
Q ss_pred cCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 27 ~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
.+.++.+... .-.|=||||.|..+|...+- +|+||++|-+=
T Consensus 18 ~~~~Gli~VY--tGdGKGKTTAAlGlalRAaG-~G~rV~iiQFl 58 (178)
T PRK07414 18 YTIEGLVQVF--TSSQRNFFTSVMAQALRIAG-QGTPVLIVQFL 58 (178)
T ss_pred CCCCCEEEEE--eCCCCCchHHHHHHHHHHhc-CCCEEEEEEEe
Confidence 3444555555 45688999999999999999 99999999654
No 303
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.80 E-value=0.015 Score=43.00 Aligned_cols=30 Identities=43% Similarity=0.424 Sum_probs=21.9
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 36 i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++.+..|+||||+|..||..+ |..++ ++|-
T Consensus 3 ~I~G~~gsGKST~a~~La~~~----~~~~i--~~d~ 32 (121)
T PF13207_consen 3 IISGPPGSGKSTLAKELAERL----GFPVI--SMDD 32 (121)
T ss_dssp EEEESTTSSHHHHHHHHHHHH----TCEEE--EEHH
T ss_pred EEECCCCCCHHHHHHHHHHHH----CCeEE--Eecc
Confidence 446899999999999887655 55554 5553
No 304
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=95.79 E-value=0.12 Score=42.68 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=40.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc--CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK--VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~--~~~~~~~~ViN~~~~ 205 (295)
..+.+.|.|+++.-....+.......+|.+|++...+. .++..+...++.+.+ .+.++ .+|.|+.+.
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~pi-ilvgNK~Dl 129 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDV 129 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEEchhh
Confidence 34678899998643322222223456788887766554 466666655555543 23444 599999985
No 305
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=95.79 E-value=0.13 Score=39.29 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=37.7
Q ss_pred CCccEEEEcCCCCCCccc--------hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQ--------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~--------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.++++|+|+...... .....+..+|.++++.......-..-...+.. ..+.++ .+|+|+.+.
T Consensus 47 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~v-i~v~nK~D~ 119 (157)
T cd04164 47 GGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPI-IVVLNKSDL 119 (157)
T ss_pred CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCE-EEEEEchhc
Confidence 456789999996332111 12234457899999988875332222233332 234444 599999984
No 306
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.78 E-value=0.023 Score=49.58 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=33.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
++++-|+++ .|+||||++.++...+.+ .|..+++||+...
T Consensus 53 G~ivEi~G~-~ssGKttLaL~~ia~~q~-~g~~~a~ID~e~~ 92 (322)
T PF00154_consen 53 GRIVEIYGP-ESSGKTTLALHAIAEAQK-QGGICAFIDAEHA 92 (322)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHHHH-TT-EEEEEESSS-
T ss_pred CceEEEeCC-CCCchhhhHHHHHHhhhc-ccceeEEecCccc
Confidence 689999877 578999999999999888 8999999998754
No 307
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.72 E-value=0.017 Score=52.80 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=34.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
--+.++++..|+|||+++.++|..+|...|++|++++++-..
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~ 235 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSA 235 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 345566899999999999999999983279999999988543
No 308
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=95.72 E-value=0.48 Score=39.77 Aligned_cols=67 Identities=19% Similarity=0.064 Sum_probs=39.6
Q ss_pred CCccEEEEcCCCCCCc------cc-------hhhhhhccC-ceEEEeeCCC-cchHHHHHHHHHHHhcCCCCeeeEEecc
Q 022525 138 GNLDILVIDMPPGTGD------AQ-------LTTTQTLQL-SGALIVSTPQ-DVALIDARKGITMFSKVQVPILGLVENM 202 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~------~~-------~~~~~l~~a-d~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~ViN~ 202 (295)
...|+++||+|+-... .. .....+... +.++.|+... ...-....++.+++...+.+.+ .|+|+
T Consensus 123 ~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti-~ViTK 201 (240)
T smart00053 123 HVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTI-GVITK 201 (240)
T ss_pred CCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEE-EEEEC
Confidence 3589999999964321 00 112222323 3555555433 2234455677788877776665 89999
Q ss_pred ccC
Q 022525 203 SCF 205 (295)
Q Consensus 203 ~~~ 205 (295)
.+.
T Consensus 202 ~D~ 204 (240)
T smart00053 202 LDL 204 (240)
T ss_pred CCC
Confidence 984
No 309
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.68 E-value=0.2 Score=39.06 Aligned_cols=67 Identities=12% Similarity=0.011 Sum_probs=41.2
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCC-CcchHHHHHHHHHHHhcCC--CCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTP-QDVALIDARKGITMFSKVQ--VPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~--~~~~~~ViN~~~~ 205 (295)
.+.+.|.|+++..............+|.++++.+. +..++..+...++.+.... ...+.+|.|+.|.
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 35678899986433222223344568888888764 4457777776666554431 2334589999884
No 310
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.031 Score=53.94 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=71.6
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFG 218 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~ 218 (295)
.|.+-+||||+..+...-....|..+|..|+|+.+...-...+...++++.+.+.|.+ +++|++|.-.. . -
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmDR~~a-------~-~ 145 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMDRLGA-------D-F 145 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECcccccc-------C-h
Confidence 4889999999998876666777888999999999999888899999999999999987 99999983211 1 1
Q ss_pred CchhhHHHHHhCCcEEE-eec
Q 022525 219 KGGTHRTAAEMGLKVIG-EIP 238 (295)
Q Consensus 219 ~~~~~~~~~~~g~~~~~-~Ip 238 (295)
....+++...++..... .+|
T Consensus 146 ~~~~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 146 YLVVEQLKERLGANPVPVQLP 166 (697)
T ss_pred hhhHHHHHHHhCCCceeeecc
Confidence 24577888888764432 455
No 311
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.67 E-value=0.15 Score=39.85 Aligned_cols=66 Identities=9% Similarity=0.017 Sum_probs=38.8
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
.+.+.+.|+|+...........+..+|.++++.+.... ++......+..+.. .+.+.+ +|.|+.|.
T Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i-~v~NK~D~ 124 (169)
T cd04114 55 KIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITI-LVGNKIDL 124 (169)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECccc
Confidence 35678899986433222223455678888888776543 44444444433332 345554 89999984
No 312
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.66 E-value=0.03 Score=49.56 Aligned_cols=42 Identities=26% Similarity=0.214 Sum_probs=32.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHH--h-C--CCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALAS--K-C--QLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~--~-~--g~~VlliD~D~~ 72 (295)
...|+...+..|+|||+++..|+...+. . . +.+|+.||....
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t 171 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT 171 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC
Confidence 3566666799999999999999976652 0 1 369999999754
No 313
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.034 Score=43.13 Aligned_cols=35 Identities=34% Similarity=0.446 Sum_probs=29.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
+..|.|+ +..||||||++.-++-.|.+ .|++|.-+
T Consensus 5 ~mki~IT-G~PGvGKtTl~~ki~e~L~~-~g~kvgGf 39 (179)
T COG1618 5 AMKIFIT-GRPGVGKTTLVLKIAEKLRE-KGYKVGGF 39 (179)
T ss_pred ceEEEEe-CCCCccHHHHHHHHHHHHHh-cCceeeeE
Confidence 4566664 88999999999999999999 99998655
No 314
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.64 E-value=0.025 Score=47.21 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=33.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.++.+ .+..|+||||++.+++..+++ .|.+++.|+++...
T Consensus 25 ~~~~i-~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~~~ 64 (230)
T PRK08533 25 SLILI-EGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQLTT 64 (230)
T ss_pred cEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCH
Confidence 44444 589999999999999999999 99999999977543
No 315
>PRK13351 elongation factor G; Reviewed
Probab=95.61 E-value=0.16 Score=49.58 Aligned_cols=92 Identities=15% Similarity=0.076 Sum_probs=64.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..+.+.++|||+..+........+..+|.+++|.+............++.+...+.+++ +|+|+.+.... .
T Consensus 71 ~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~~~-------~- 141 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDRVGA-------D- 141 (687)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCCCCC-------C-
Confidence 46789999999754433344566778999999998876555556677777777788876 89999984311 1
Q ss_pred CCchhhHHHHHhCCcEEE-eec
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIP 238 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip 238 (295)
-...++++.+.++..... .+|
T Consensus 142 ~~~~~~~i~~~l~~~~~~~~~P 163 (687)
T PRK13351 142 LFKVLEDIEERFGKRPLPLQLP 163 (687)
T ss_pred HHHHHHHHHHHHCCCeEEEEec
Confidence 124577888888876653 455
No 316
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.046 Score=47.55 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=34.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+...+.++|||+..+--...+......|..++|++....--..+.+.+-. .+.-.+.+.+|+|+.+.
T Consensus 68 e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii-g~~~c~klvvvinkid~ 134 (522)
T KOG0461|consen 68 EQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII-GELLCKKLVVVINKIDV 134 (522)
T ss_pred ccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhh-hhhhccceEEEEecccc
Confidence 45668999999766521112222223466666665444321122222221 22334555699999874
No 317
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=95.58 E-value=0.11 Score=40.80 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=40.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHH-HHHHHHhc--CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDAR-KGITMFSK--VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~-~~~~~l~~--~~~~~~~~ViN~~~~ 205 (295)
..+++.|+|+|+...........+..+|.++++.... ..++..+. ..++.++. .+.++ .+|.|+.+.
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pv-iiv~nK~Dl 115 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPI-ILVGNKSDL 115 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhc
Confidence 5678999999854332122233456789888887654 34555543 23333432 34454 589999985
No 318
>PRK06762 hypothetical protein; Provisional
Probab=95.55 E-value=0.021 Score=44.93 Aligned_cols=36 Identities=33% Similarity=0.434 Sum_probs=26.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+++|.+ .+..|+||||+|..|+..+ |..+.+++.|.
T Consensus 2 ~~li~i-~G~~GsGKST~A~~L~~~l----~~~~~~i~~D~ 37 (166)
T PRK06762 2 TTLIII-RGNSGSGKTTIAKQLQERL----GRGTLLVSQDV 37 (166)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHh----CCCeEEecHHH
Confidence 455655 6999999999999888666 33577787654
No 319
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.53 E-value=0.11 Score=45.66 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=28.9
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
|.+.++==|+||||+--++... . .|.|+.+|-.|...
T Consensus 6 v~iltGFLGaGKTTll~~ll~~--~-~~~riaVi~NEfG~ 42 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE--Q-HGYKIAVIENEFGE 42 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--c-cCCcccccccCcCC
Confidence 4555688899999999988753 4 68899999777654
No 320
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.53 E-value=0.03 Score=46.66 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=33.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+..+.+. +..|+||||++.+++...++ .|.+|++++++..
T Consensus 20 G~~~~i~-G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVT-GEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEE-CCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCC
Confidence 4566664 78899999999999998888 8999999998643
No 321
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=95.52 E-value=0.12 Score=40.59 Aligned_cols=67 Identities=18% Similarity=0.116 Sum_probs=42.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC--CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
..+.+.+.|+++.-.........+..+|.+|++...+. .++..+...+..+.+. +.++ .+|.|+.+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pi-iiv~nK~Dl 116 (166)
T cd00877 47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPI-VLCGNKVDI 116 (166)
T ss_pred EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEEchhc
Confidence 45778999998643322222334456888888877654 3566665555555543 4555 499999985
No 322
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.015 Score=47.06 Aligned_cols=37 Identities=32% Similarity=0.331 Sum_probs=31.5
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.+.++-.|+||||+|-+||..|.+ .+.+|.-+..|..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~-~i~~vi~l~kdy~ 40 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ-EIWRVIHLEKDYL 40 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH-hhhhccccchhhh
Confidence 345688999999999999999999 9999987766654
No 323
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.49 E-value=0.031 Score=46.38 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=34.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.+. +..|+|||+++.+++...++ .|.+|++++++..
T Consensus 16 g~~~li~-G~~G~GKt~~~~~~~~~~~~-~g~~~~y~s~e~~ 55 (224)
T TIGR03880 16 GHVIVVI-GEYGTGKTTFSLQFLYQGLK-NGEKAMYISLEER 55 (224)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCC
Confidence 4666665 56999999999999999999 8999999999864
No 324
>PRK09354 recA recombinase A; Provisional
Probab=95.47 E-value=0.028 Score=49.66 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=34.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++-|+ +..|+||||++.+++...++ .|.+++.||+...
T Consensus 60 G~IteI~-G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s 99 (349)
T PRK09354 60 GRIVEIY-GPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHA 99 (349)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccc
Confidence 3555554 67999999999999999999 9999999998753
No 325
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.46 E-value=0.061 Score=49.77 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=22.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~ 58 (295)
+-+++|+ +..|+||||+...|-..+.+
T Consensus 69 PfIvavv-GPpGtGKsTLirSlVrr~tk 95 (1077)
T COG5192 69 PFIVAVV-GPPGTGKSTLIRSLVRRFTK 95 (1077)
T ss_pred CeEEEee-cCCCCChhHHHHHHHHHHHH
Confidence 3566665 77899999999999888887
No 326
>PRK05595 replicative DNA helicase; Provisional
Probab=95.46 E-value=0.025 Score=52.11 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=34.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.-+.++++..|+|||+++.++|..+|...|++|+++.+.-.
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 45667789999999999999999887427999999988753
No 327
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.43 E-value=0.033 Score=46.75 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=34.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.++.| .+..|+|||+++.++++..++ .|.+|++|.++...
T Consensus 22 s~~lI-~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~ 61 (237)
T TIGR03877 22 NVVLL-SGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHP 61 (237)
T ss_pred eEEEE-EcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCH
Confidence 44444 689999999999999999888 99999999998754
No 328
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.41 E-value=0.11 Score=48.32 Aligned_cols=67 Identities=10% Similarity=0.040 Sum_probs=40.4
Q ss_pred CCccEEEEcCCCCCC-------ccch----hhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTG-------DAQL----TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~-------~~~~----~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
++..+.++|||+-.. ...+ +...+..||.+++|...+......-...+..+...+.+++ +|+|+.|.
T Consensus 257 ~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piI-iV~NK~Dl 334 (472)
T PRK03003 257 GGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALV-LAFNKWDL 334 (472)
T ss_pred CCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 345578899985210 0011 1123457899999988766432333345566655666664 99999984
No 329
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.41 E-value=0.051 Score=48.76 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=37.1
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
++++|+|+ +..|+||||+...|...|.+ +|++|.+|-.|...
T Consensus 204 ~~~~~~~~-g~~~~GKtt~~~~l~~~l~~-~g~~v~~iKh~~h~ 245 (366)
T PRK14489 204 APPLLGVV-GYSGTGKTTLLEKLIPELIA-RGYRIGLIKHSHHR 245 (366)
T ss_pred CccEEEEe-cCCCCCHHHHHHHHHHHHHH-cCCEEEEEEECCcc
Confidence 46899997 56899999999999999999 99999999887553
No 330
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.40 E-value=0.03 Score=50.20 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.+.+.++..|+||||++..+|..+++ .|.+|++|+...
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~EE 120 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEE 120 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCc
Confidence 45556789999999999999999999 899999998764
No 331
>PRK12377 putative replication protein; Provisional
Probab=95.39 E-value=0.029 Score=47.36 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=30.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
-+.+ .+..|+|||.++..+|..+.+ .|++|+++...
T Consensus 103 ~l~l-~G~~GtGKThLa~AIa~~l~~-~g~~v~~i~~~ 138 (248)
T PRK12377 103 NFVF-SGKPGTGKNHLAAAIGNRLLA-KGRSVIVVTVP 138 (248)
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEHH
Confidence 4444 478899999999999999999 99999988653
No 332
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.38 E-value=0.055 Score=42.37 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=41.7
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHH-HHHHHhcC--CCCeeeEEeccccCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARK-GITMFSKV--QVPILGLVENMSCFI 206 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~-~~~~l~~~--~~~~~~~ViN~~~~~ 206 (295)
..+.+.++|+|+......+....+..+|.++++...+. .++..... .+..+... +.++ .+|.|+.+..
T Consensus 46 ~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~ 117 (171)
T cd00157 46 KQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPI-ILVGTKIDLR 117 (171)
T ss_pred EEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEEccHHhh
Confidence 56789999999754322233333456899999988766 45444433 23333322 3444 5999999853
No 333
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.037 Score=47.85 Aligned_cols=155 Identities=16% Similarity=0.128 Sum_probs=78.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHh---CCCeEEEEEeCCCCCCcccccccCCCc---cccccCcccccccCCceeec
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDADVYGPSVPMMMKIDQKP---EVTKDMKMVPIENYGVKCMS 106 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~---~g~~VlliD~D~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~ 106 (295)
.+...-+..|+|||+++-.||+.|.-+ +-.+..+|+.+... -.+-||+....- -+.+...... ...++.++=
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs-LFSKWFsESgKlV~kmF~kI~ELv~-d~~~lVfvL 255 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS-LFSKWFSESGKLVAKMFQKIQELVE-DRGNLVFVL 255 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH-HHHHHHhhhhhHHHHHHHHHHHHHh-CCCcEEEEE
Confidence 344445889999999999999999841 23567788777643 444555443210 0000000000 011111111
Q ss_pred ccc---cc----CCCCCCccC-CchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchH
Q 022525 107 MGF---LV----PSSSPVVWR-GPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL 178 (295)
Q Consensus 107 ~~~---~~----~~~~~~~~~-~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~ 178 (295)
.+. +- +.....+.. .......+-..++.++ ...+++|+=|. .+.+ .+..+..-.||.+..|-.|+..++
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-~~~NvliL~TS-Nl~~-siD~AfVDRADi~~yVG~Pt~~ai 332 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-RYPNVLILATS-NLTD-SIDVAFVDRADIVFYVGPPTAEAI 332 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEecc-chHH-HHHHHhhhHhhheeecCCccHHHH
Confidence 000 00 000000001 1112334444556665 55566666555 4443 445555668999999988888877
Q ss_pred HHHHH-HHHHHhcCC
Q 022525 179 IDARK-GITMFSKVQ 192 (295)
Q Consensus 179 ~~~~~-~~~~l~~~~ 192 (295)
..+.+ .++.+-+.|
T Consensus 333 ~~IlkscieEL~~~g 347 (423)
T KOG0744|consen 333 YEILKSCIEELISSG 347 (423)
T ss_pred HHHHHHHHHHHHhcC
Confidence 76653 444544443
No 334
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.37 E-value=0.031 Score=51.43 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=34.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
..+.+..+..|+||||++..++..+++ .|.+|++|+...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~Ee 118 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSGEE 118 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccc
Confidence 345566789999999999999999998 899999999764
No 335
>PRK08760 replicative DNA helicase; Provisional
Probab=95.37 E-value=0.026 Score=52.34 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=34.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
--+.+.++..|+|||+++.++|...|.+.|++|+++.++-..
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 356666899999999999999999986269999999887644
No 336
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=95.37 E-value=0.06 Score=49.35 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=42.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch---HHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA---LIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s---~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.+.|+|+|+.-.........+..+|.+++|++.+... ...+...+..+...+.+.+.+++|+.|.
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl 153 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDS 153 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhc
Confidence 5678999999964321111233345789999998877652 2223333334444565666689999995
No 337
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.36 E-value=0.038 Score=47.08 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=37.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~ 76 (295)
+.++.| .+..|+|||+++.++++..++ .|.+|+.|.++.....+
T Consensus 23 g~~~lI-~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 23 GSVVLI-TGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEEL 66 (260)
T ss_pred CcEEEE-EcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHH
Confidence 455555 589999999999999999999 89999999999766443
No 338
>PRK09183 transposase/IS protein; Provisional
Probab=95.36 E-value=0.03 Score=47.68 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=29.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
..+.++ +..|+|||+++..+|..+.. .|++|+.++
T Consensus 103 ~~v~l~-Gp~GtGKThLa~al~~~a~~-~G~~v~~~~ 137 (259)
T PRK09183 103 ENIVLL-GPSGVGKTHLAIALGYEAVR-AGIKVRFTT 137 (259)
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 445554 67899999999999999888 999999885
No 339
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.31 E-value=0.031 Score=51.54 Aligned_cols=38 Identities=32% Similarity=0.458 Sum_probs=33.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
-+.+.++..|+||||++..++..+++ .|.+|++|+.+.
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~-~g~kvlYvs~EE 132 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAK-NQMKVLYVSGEE 132 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEECcC
Confidence 45556799999999999999999999 899999998864
No 340
>PRK08506 replicative DNA helicase; Provisional
Probab=95.31 E-value=0.03 Score=51.98 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=35.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
--+.++++..|+|||+++.++|..+++ .|++|+++.++-..
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~-~g~~V~~fSlEMs~ 232 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALN-QDKGVAFFSLEMPA 232 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHh-cCCcEEEEeCcCCH
Confidence 446666899999999999999999998 89999999888644
No 341
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.31 E-value=0.044 Score=48.53 Aligned_cols=42 Identities=19% Similarity=0.085 Sum_probs=31.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH--h---CCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALAS--K---CQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~--~---~g~~VlliD~D~~~ 73 (295)
-.|....+..|+|||+++..++...+. . .+.+|+.||.....
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f 169 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTF 169 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCc
Confidence 455556689999999999999976542 0 12489999998643
No 342
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=95.30 E-value=0.24 Score=39.31 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=41.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHH-HHHHHhc--CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARK-GITMFSK--VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~-~~~~l~~--~~~~~~~~ViN~~~~ 205 (295)
..+.+.|.|+++.-.........+..+|.+|++.+.+ ..++..+.. .+..+.+ .+.|+ .+|.|+.+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~pi-ilvgnK~Dl 117 (175)
T cd01874 47 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPF-LLVGTQIDL 117 (175)
T ss_pred EEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEECHhh
Confidence 4577899999965432222223455789888887744 446666653 4444443 24445 599999884
No 343
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.29 E-value=0.032 Score=45.45 Aligned_cols=35 Identities=40% Similarity=0.446 Sum_probs=28.2
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
++.+|+++ ++-|+||||++- .|++ .|.+| ||+|--
T Consensus 1 ~~~iIglT-G~igsGKStva~----~~~~-~G~~v--idaD~v 35 (201)
T COG0237 1 MMLIIGLT-GGIGSGKSTVAK----ILAE-LGFPV--IDADDV 35 (201)
T ss_pred CceEEEEe-cCCCCCHHHHHH----HHHH-cCCeE--EEccHH
Confidence 46899998 888999999887 6777 78887 588753
No 344
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.28 E-value=0.11 Score=50.93 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=42.4
Q ss_pred CCccEEEEcCCCCCCcc--------chhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDA--------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~--------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.++|||+..... ......+..||.+|+|+.....-...-....+.+++.+.+++ +|+|+.+.
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvI-lV~NK~D~ 395 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVV-LAVNKIDD 395 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 45678999999633210 111233567999999998765322222345666666677665 89999984
No 345
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=95.14 E-value=0.18 Score=44.88 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=37.9
Q ss_pred CccEEEEcCCCCCCc-cc-------hhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGD-AQ-------LTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~-~~-------~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
...++|+||++.... .. -+...+..||.+++|.+.+.. +........+.+.. .+.++ .+|+|+.|.
T Consensus 236 ~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~pi-IlV~NK~Dl 313 (351)
T TIGR03156 236 GGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQ-LLVYNKIDL 313 (351)
T ss_pred CceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCE-EEEEEeecC
Confidence 456899999864221 00 112235578999999876543 33333323333333 24444 499999984
No 346
>PRK05642 DNA replication initiation factor; Validated
Probab=95.14 E-value=0.033 Score=46.63 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=31.3
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.+..+..|+|||.++..++..+.+ .|.+|+.++++-
T Consensus 48 l~l~G~~G~GKTHLl~a~~~~~~~-~~~~v~y~~~~~ 83 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLRFEQ-RGEPAVYLPLAE 83 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEeeHHH
Confidence 345589999999999999999998 899999998763
No 347
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.13 E-value=0.033 Score=46.30 Aligned_cols=40 Identities=25% Similarity=0.211 Sum_probs=31.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D~~~ 73 (295)
.++.+ .+..|+|||+++.++++..++ . |.+|++|.++...
T Consensus 20 s~~li-~G~~GsGKT~l~~q~l~~~~~-~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 20 SVVLI-SGPPGSGKTTLALQFLYNGLK-NFGEKVLYVSFEEPP 60 (226)
T ss_dssp SEEEE-EESTTSSHHHHHHHHHHHHHH-HHT--EEEEESSS-H
T ss_pred cEEEE-EeCCCCCcHHHHHHHHHHhhh-hcCCcEEEEEecCCH
Confidence 45555 588999999999999999999 8 9999999987644
No 348
>COG4240 Predicted kinase [General function prediction only]
Probab=95.12 E-value=0.044 Score=45.02 Aligned_cols=41 Identities=29% Similarity=0.237 Sum_probs=34.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g-~~VlliD~D~~~ 73 (295)
..|..+|+..|+||||++..+-..|+. .| .+|+-+.+|--.
T Consensus 50 Pli~gisGpQGSGKStls~~i~~~L~~-kg~ert~~lSLDDlY 91 (300)
T COG4240 50 PLIVGISGPQGSGKSTLSALIVRLLAA-KGLERTATLSLDDLY 91 (300)
T ss_pred ceEEEeecCCCCchhhHHHHHHHHHHH-hcccceEEeehhhhh
Confidence 556666899999999999999999999 77 799999888543
No 349
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.12 E-value=0.038 Score=50.77 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=35.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
--+.+.++..|+|||+++.++|..+|...|.+|+++.++-..
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA 236 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence 345666899999999999999999986369999999888654
No 350
>PRK06749 replicative DNA helicase; Provisional
Probab=95.10 E-value=0.035 Score=50.80 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=35.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.-+.|.++..|+|||+++.++|...|+ .|++|+++.+.-..
T Consensus 186 G~LiiIaarPgmGKTafal~ia~~~a~-~g~~v~~fSlEMs~ 226 (428)
T PRK06749 186 GDFVVLGARPSMGKTAFALNVGLHAAK-SGAAVGLFSLEMSS 226 (428)
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHh-cCCCEEEEEeeCCH
Confidence 445666899999999999999999999 89999999887654
No 351
>PRK08727 hypothetical protein; Validated
Probab=95.06 E-value=0.037 Score=46.30 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=30.3
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
.+..+..|+|||.++..++..+.+ .|++|.++.++
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~-~~~~~~y~~~~ 78 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ-AGRSSAYLPLQ 78 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEeHH
Confidence 444588999999999999999999 89999999753
No 352
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.06 E-value=0.25 Score=40.25 Aligned_cols=38 Identities=32% Similarity=0.465 Sum_probs=29.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.|+++ +..|+||||+...+...+.. . .++.++..|...
T Consensus 3 ~i~i~-G~~GsGKTTll~~l~~~l~~-~-~~~~~~~~d~~~ 40 (199)
T TIGR00101 3 KIGVA-GPVGSGKTALIEALTRALRQ-K-YQLAVITNDIYT 40 (199)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHhhCc-C-CcEEEEeCCcCC
Confidence 45554 88999999999999988776 4 457777777544
No 353
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.05 E-value=0.045 Score=41.28 Aligned_cols=40 Identities=25% Similarity=0.164 Sum_probs=32.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+.+.+ .+..|+||||++..++..+.. .+.++..+++....
T Consensus 20 ~~v~i-~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~~~~~ 59 (151)
T cd00009 20 KNLLL-YGPPGTGKTTLARAIANELFR-PGAPFLYLNASDLL 59 (151)
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHhhc-CCCCeEEEehhhhh
Confidence 44444 589999999999999999988 88999999876543
No 354
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.05 E-value=0.08 Score=47.57 Aligned_cols=88 Identities=13% Similarity=0.000 Sum_probs=70.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
.++-+=|+|||+.-+.+.-++..|.++|-.|+|......--..+.++.+-|+-.++|++ ..+|+.+.. ..-
T Consensus 79 ~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~-TFiNKlDR~--------~rd 149 (528)
T COG4108 79 ADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIF-TFINKLDRE--------GRD 149 (528)
T ss_pred CCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceE-EEeeccccc--------cCC
Confidence 34556789999987777777888889999999999998878888999999988899987 899999832 111
Q ss_pred CCchhhHHHHHhCCcEE
Q 022525 218 GKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~ 234 (295)
.-+.++++.+.+++.+.
T Consensus 150 P~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 150 PLELLDEIEEELGIQCA 166 (528)
T ss_pred hHHHHHHHHHHhCccee
Confidence 23668999999988764
No 355
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.04 E-value=0.037 Score=48.76 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=31.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+-+.++ +..|+|||+++..+|..+.. .|++|+.++++
T Consensus 184 ~~Lll~-G~~GtGKThLa~aIa~~l~~-~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFY-GNTGTGKTFLSNCIAKELLD-RGKSVIYRTAD 220 (329)
T ss_pred CcEEEE-CCCCCcHHHHHHHHHHHHHH-CCCeEEEEEHH
Confidence 445554 67899999999999999999 99999999764
No 356
>PRK08006 replicative DNA helicase; Provisional
Probab=95.02 E-value=0.043 Score=50.83 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=34.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.-+.|+++..|+|||+++.|+|..+|...|++|+++.+.-..
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~ 265 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPG 265 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 456666899999999999999999995369999999887543
No 357
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.01 E-value=0.047 Score=50.93 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=36.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
-.+.+.++..|+||||++.++++..++ +|.+|+++-++...
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~ 303 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESR 303 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCH
Confidence 456666799999999999999999999 99999999988654
No 358
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=95.00 E-value=0.098 Score=39.27 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=40.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHH-----HHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGI-----TMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~-----~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+++.++|+|+...........+..+|.++++............... ......+.++ .+|+|+.+.
T Consensus 43 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ivv~nk~D~ 114 (157)
T cd00882 43 KKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPI-ILVGNKIDL 114 (157)
T ss_pred EEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcE-EEEEecccc
Confidence 568899999996443223334455678888888877764433322221 2222334455 599999884
No 359
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.00 E-value=0.038 Score=45.74 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=32.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
..|.++ ++.|+|||+++..++..+.+ .+.+++.+|++..
T Consensus 39 ~~lll~-G~~G~GKT~la~~~~~~~~~-~~~~~~~i~~~~~ 77 (226)
T TIGR03420 39 RFLYLW-GESGSGKSHLLQAACAAAEE-RGKSAIYLPLAEL 77 (226)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHh-cCCcEEEEeHHHH
Confidence 455554 78899999999999999988 8999999987644
No 360
>PRK06904 replicative DNA helicase; Validated
Probab=94.97 E-value=0.044 Score=50.79 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=34.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.-+.|.++..|+|||+++.|+|...|...|++|+++.+.-..
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~ 262 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPA 262 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 446666899999999999999999986369999999887543
No 361
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=94.95 E-value=0.036 Score=50.48 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.+.|+|||+...........+..+|.+++|+.....-...+.+.+..+...+.+.+.+++|+.|.
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 45679999999643321223456778999999999876555555566666666677666689999995
No 362
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.94 E-value=0.062 Score=43.40 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=30.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
++.|+|. +--|+||||++..|+..|.. .|++|..+-
T Consensus 3 g~~Ivie-G~~GsGKsT~~~~L~~~l~~-~g~~v~~~~ 38 (195)
T TIGR00041 3 GMFIVIE-GIDGAGKTTQANLLKKLLQE-NGYDVLFTR 38 (195)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 4667775 78899999999999999999 999997664
No 363
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.94 E-value=0.047 Score=45.42 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=31.6
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.+..+..|+|||+++..++..+.. .|.++..+++..
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~~~~-~~~~~~~i~~~~ 80 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVADASY-GGRNARYLDAAS 80 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEehHH
Confidence 344599999999999999999988 899999998865
No 364
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.93 E-value=0.32 Score=39.08 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=39.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHH-HHHHHHhc--CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSK--VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~-~~~~~l~~--~~~~~~~~ViN~~~~ 205 (295)
..+++.|.|+++......+.......+|.++++...+. .+++.+. ..+..+.. .+.+ +.+|.|+.|.
T Consensus 46 ~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl 116 (189)
T cd04134 46 LHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDL 116 (189)
T ss_pred EEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 34778999999643321222223446788887765443 4565554 23444443 2444 4599999984
No 365
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=94.91 E-value=0.06 Score=47.54 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=36.5
Q ss_pred CeEEEEeeC-CCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASG-KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~-kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+||.|-|- -||+|||-++..|+..|.+ +|++|.+|.-.+.+
T Consensus 56 vPVIsVGNitvGGTGKTP~v~~La~~l~~-~G~~~~IlSRGYg~ 98 (338)
T PRK01906 56 VPVVVVGNVTVGGTGKTPTVIALVDALRA-AGFTPGVVSRGYGA 98 (338)
T ss_pred CCEEEECCccCCCCChHHHHHHHHHHHHH-cCCceEEEecCCCC
Confidence 478888774 5899999999999999999 99999999776654
No 366
>PRK05748 replicative DNA helicase; Provisional
Probab=94.89 E-value=0.044 Score=50.62 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=34.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
--+.+.++..|+|||+++.++|...|...|.+|+++.+.-..
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~ 244 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGA 244 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCH
Confidence 345566799999999999999999985269999999887654
No 367
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.89 E-value=0.046 Score=45.34 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=33.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCC------CeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ------LKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g------~~VlliD~D~~ 72 (295)
+.++.|+ +..|+|||+++.++|...+. .+ .+|+.||.+..
T Consensus 19 g~v~~I~-G~~GsGKT~l~~~ia~~~~~-~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 19 GRITEIF-GEFGSGKTQLCLQLAVEAQL-PGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred CcEEEEe-CCCCCChhHHHHHHHHHhhc-ccccCCCcceEEEEecCCC
Confidence 4666665 69999999999999999888 77 89999998753
No 368
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=94.89 E-value=0.17 Score=43.91 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=34.1
Q ss_pred CCccEEEEcCCCCCCccchh---hhhhc------cCceEEEeeCCCcchHHHH-HHHHHHHhc-CCC---CeeeEEeccc
Q 022525 138 GNLDILVIDMPPGTGDAQLT---TTQTL------QLSGALIVSTPQDVALIDA-RKGITMFSK-VQV---PILGLVENMS 203 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~---~~~l~------~ad~viiv~~~~~~s~~~~-~~~~~~l~~-~~~---~~~~~ViN~~ 203 (295)
.++.+.|||||+-.+..... ...+. ..|.+++|...+...+... ...++.+.. +|. ....+|+++.
T Consensus 84 ~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~ 163 (313)
T TIGR00991 84 AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHA 163 (313)
T ss_pred CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECC
Confidence 45678999998533321111 11111 3677888865443322211 233333332 121 2355889988
Q ss_pred cC
Q 022525 204 CF 205 (295)
Q Consensus 204 ~~ 205 (295)
+.
T Consensus 164 d~ 165 (313)
T TIGR00991 164 QF 165 (313)
T ss_pred cc
Confidence 74
No 369
>PRK08840 replicative DNA helicase; Provisional
Probab=94.88 E-value=0.049 Score=50.35 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=35.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
..-+.+.++..|+|||+++.|+|...|...|++|+++.+.-..
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~ 258 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPA 258 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCH
Confidence 3456666899999999999999999985369999999888543
No 370
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.88 E-value=0.047 Score=47.66 Aligned_cols=38 Identities=29% Similarity=0.229 Sum_probs=31.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
.+-+.++ +.-|+|||.++..+|..+++ .|.+|.++.+.
T Consensus 156 ~~gl~L~-G~~G~GKThLa~Aia~~l~~-~g~~v~~~~~~ 193 (306)
T PRK08939 156 VKGLYLY-GDFGVGKSYLLAAIANELAK-KGVSSTLLHFP 193 (306)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHH-cCCCEEEEEHH
Confidence 3455554 67899999999999999999 99999999653
No 371
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=94.87 E-value=0.072 Score=48.23 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=57.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
++|-+=|+|||+..+...-.-..|...|.+++++.+....+-.+.-.++.....+++++ +|+|+++..
T Consensus 66 ~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PI-VVvNKiDrp 133 (603)
T COG1217 66 NGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPI-VVINKIDRP 133 (603)
T ss_pred CCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcE-EEEeCCCCC
Confidence 77889999999877655444556778899999999999999999999998888999887 999999843
No 372
>PRK08118 topology modulation protein; Reviewed
Probab=94.85 E-value=0.035 Score=43.87 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=18.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALAS 58 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~ 58 (295)
.|.|+ +.+|+||||+|..|+..+.-
T Consensus 3 rI~I~-G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILI-GSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhCC
Confidence 44444 78999999999887755433
No 373
>PTZ00035 Rad51 protein; Provisional
Probab=94.82 E-value=0.093 Score=46.46 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=30.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~-----~g~~VlliD~D~~ 72 (295)
+.++-| .+..|+|||+++..++.....- .+.+|+.||....
T Consensus 118 G~iteI-~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~ 163 (337)
T PTZ00035 118 GSITEL-FGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT 163 (337)
T ss_pred CeEEEE-ECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence 344445 5799999999999998775410 2568999998653
No 374
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.029 Score=50.34 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=45.4
Q ss_pred CCeEEEEee---CCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCccccc
Q 022525 30 VKDVIAVAS---GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPI 97 (295)
Q Consensus 30 ~~~vI~i~s---~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~ 97 (295)
.+|.|.|++ ..-|.||||++..|+.+|.+ .|+++.+- ...|++--.||++....-.....+.|.
T Consensus 51 ~gKlILVTaitPTPaGEGKsTttiGL~~al~~-lgK~~i~a---lRePSlGP~fGiKGGAaGGGyaqv~Pm 117 (554)
T COG2759 51 DGKLILVTAITPTPAGEGKTTTTIGLVDALNK-LGKKAIIA---LREPSLGPVFGIKGGAAGGGYAQVLPM 117 (554)
T ss_pred CceEEEEEecCCCCCCCCcceeeehHHHHHHh-cCchheEE---eccCCcCCccccccccCCCceeeeeeh
Confidence 467776665 56799999999999999999 99998654 445677777888764333333333333
No 375
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.78 E-value=0.034 Score=43.99 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 40 KGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 40 kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
--|=||||-|..+|...+- +|.||+++-+
T Consensus 11 G~GKGKTTAAlGlalRA~G-~G~rV~ivQF 39 (172)
T PF02572_consen 11 GDGKGKTTAALGLALRAAG-HGMRVLIVQF 39 (172)
T ss_dssp SSSS-HHHHHHHHHHHHHC-TT--EEEEES
T ss_pred CCCCCchHHHHHHHHHHHh-CCCEEEEEEE
Confidence 3477999999999999999 9999999954
No 376
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.77 E-value=0.11 Score=42.41 Aligned_cols=105 Identities=14% Similarity=0.190 Sum_probs=57.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (295)
.+.+.=+--|+|||-++..+++-+-+ .|++|.++..... . ..+...-..-+.+ ..... -...+.++|..
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~-~g~~v~yvsTe~T--~-refi~qm~sl~yd-v~~~~--l~G~l~~~~~~---- 97 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLM-NGYRVTYVSTELT--V-REFIKQMESLSYD-VSDFL--LSGRLLFFPVN---- 97 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHh-CCceEEEEEechh--H-HHHHHHHHhcCCC-chHHH--hcceeEEEEec----
Confidence 34444588899999999999999999 9999999965432 1 2222110000000 00000 00111222211
Q ss_pred CCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCC
Q 022525 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP 149 (295)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~ 149 (295)
.....+........++.+++..+..++|+||||+=.
T Consensus 98 -~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls 133 (235)
T COG2874 98 -LEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLS 133 (235)
T ss_pred -ccccccChHHHHHHHHHHHhhHHhhcCCEEEEeccc
Confidence 112222233334556666666666899999999853
No 377
>PRK08181 transposase; Validated
Probab=94.77 E-value=0.043 Score=46.91 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=29.3
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 36 i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
+..+..|+|||.++..+|..+.+ .|++|+.+.+
T Consensus 110 ll~Gp~GtGKTHLa~Aia~~a~~-~g~~v~f~~~ 142 (269)
T PRK08181 110 LLFGPPGGGKSHLAAAIGLALIE-NGWRVLFTRT 142 (269)
T ss_pred EEEecCCCcHHHHHHHHHHHHHH-cCCceeeeeH
Confidence 33488999999999999999999 9999999865
No 378
>PRK06893 DNA replication initiation factor; Validated
Probab=94.77 E-value=0.052 Score=45.31 Aligned_cols=35 Identities=14% Similarity=-0.036 Sum_probs=31.0
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
.+..+..|+|||+++..+|..+.+ .|.+|.+++++
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~y~~~~ 76 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLL-NQRTAIYIPLS 76 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEeeHH
Confidence 344589999999999999999999 89999999875
No 379
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.72 E-value=0.082 Score=45.68 Aligned_cols=41 Identities=37% Similarity=0.422 Sum_probs=33.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC--CCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~--g~~VlliD~D~~~ 73 (295)
+.+|+| .+..|+||||++.-|...+.+ . +.+|.++..|...
T Consensus 62 p~IIGI-aG~~GSGKSTlar~L~~ll~~-~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 62 PYIISI-AGSVAVGKSTTARILQALLSR-WPEHRKVELITTDGFL 104 (290)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHHhh-cCCCCceEEEeccccc
Confidence 467777 588999999999999988885 3 4579999888755
No 380
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.71 E-value=0.16 Score=49.78 Aligned_cols=67 Identities=18% Similarity=0.034 Sum_probs=41.3
Q ss_pred CCccEEEEcCCCCCC-------ccch----hhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTG-------DAQL----TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~-------~~~~----~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
++.++.++|||+-.. ...+ +...+..+|.++++..........-.+.+..+...+.+++ +|+|+.|.
T Consensus 496 ~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piI-iV~NK~DL 573 (712)
T PRK09518 496 DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALV-LVFNKWDL 573 (712)
T ss_pred CCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEEchhc
Confidence 445688999995211 0011 1223557899999988766433333445555555666665 99999984
No 381
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.70 E-value=0.036 Score=45.77 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=26.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHH--------HHhCCCeEEEEE
Q 022525 34 IAVASGKGGVGKSTTAVNLAVAL--------ASKCQLKVGLLD 68 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~l--------a~~~g~~VlliD 68 (295)
++++++..|+||||+.+.+...+ .. .+.+++++-
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~-~~~~il~~~ 60 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSAD-RGKKILVVS 60 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCC-CSS-EEEEE
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhh-ccccceeec
Confidence 67788899999999999999998 45 788888873
No 382
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.68 E-value=0.052 Score=45.00 Aligned_cols=39 Identities=36% Similarity=0.377 Sum_probs=30.7
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHh-CCCeEEEEEeCCCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG 73 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~-~g~~VlliD~D~~~ 73 (295)
|+| ++..|+||||++..|+..|... .+.+|.+|.+|...
T Consensus 2 igI-~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 2 IGI-AGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEe-eCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 556 4889999999999999998741 35678888888654
No 383
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.66 E-value=0.035 Score=43.10 Aligned_cols=28 Identities=46% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEE
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVG 65 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vl 65 (295)
+|+| |++.|+||||+|..||-. .|.+.+
T Consensus 2 ~ItI-sG~pGsG~TTva~~lAe~----~gl~~v 29 (179)
T COG1102 2 VITI-SGLPGSGKTTVARELAEH----LGLKLV 29 (179)
T ss_pred EEEe-ccCCCCChhHHHHHHHHH----hCCcee
Confidence 3444 899999999999866544 455553
No 384
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=94.65 E-value=0.4 Score=38.79 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=36.2
Q ss_pred CCccEEEEcCCCCCCccc----hh-------hhhhccCceEEEeeCCCcchHHHHHHHHHHHhcC-C---CCeeeEEecc
Q 022525 138 GNLDILVIDMPPGTGDAQ----LT-------TTQTLQLSGALIVSTPQDVALIDARKGITMFSKV-Q---VPILGLVENM 202 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~----~~-------~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-~---~~~~~~ViN~ 202 (295)
.+..++|||||+-.+... +. .......|.+++|...+... ..-...++.+.+. + .....+|+|+
T Consensus 47 ~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~ 125 (196)
T cd01852 47 DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFT-EEEEQAVETLQELFGEKVLDHTIVLFTR 125 (196)
T ss_pred CCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcC-HHHHHHHHHHHHHhChHhHhcEEEEEEC
Confidence 356789999985333210 00 00112457788887766533 3334555555542 3 2345588888
Q ss_pred ccC
Q 022525 203 SCF 205 (295)
Q Consensus 203 ~~~ 205 (295)
.+.
T Consensus 126 ~d~ 128 (196)
T cd01852 126 GDD 128 (196)
T ss_pred ccc
Confidence 773
No 385
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.61 E-value=0.081 Score=34.99 Aligned_cols=32 Identities=47% Similarity=0.546 Sum_probs=25.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
|++ .+.-|+||||++..|+..| .+.++.++|-
T Consensus 2 i~i-~G~~gsGKst~~~~l~~~l---~~~~~~~i~~ 33 (69)
T cd02019 2 IAI-TGGSGSGKSTVAKKLAEQL---GGRSVVVLDE 33 (69)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh---cCCCEEEEeE
Confidence 444 4888999999999999988 3667777765
No 386
>PRK06321 replicative DNA helicase; Provisional
Probab=94.59 E-value=0.064 Score=49.71 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=34.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
--+.+.++..|+|||+++.++|..+|.+.|++|+++.+.-..
T Consensus 226 G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~ 267 (472)
T PRK06321 226 SNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV 267 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 345566799999999999999999995369999999887644
No 387
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=94.56 E-value=0.067 Score=44.49 Aligned_cols=41 Identities=32% Similarity=0.239 Sum_probs=35.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la-~~~g~~VlliD~D~~~ 73 (295)
.+-++|. +.-|+|||+++..|...+. + .|.+++++|..-..
T Consensus 23 ~~H~~I~-G~TGsGKS~~~~~ll~~l~~~-~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 23 NRHIAIF-GTTGSGKSNTVKVLLEELLKK-KGAKVIIFDPHGEY 64 (229)
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHHHhc-CCCCEEEEcCCCcc
Confidence 4677777 8889999999999999999 7 89999999876544
No 388
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.55 E-value=0.081 Score=44.12 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=32.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEE-EEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL-LDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vll-iD~D~~ 72 (295)
+.+|+| ++..|+||||++..|+..+.. .+..+.+ |.+|..
T Consensus 33 ~~iigi-~G~~GsGKTTl~~~L~~~l~~-~~g~~~v~i~~D~~ 73 (229)
T PRK09270 33 RTIVGI-AGPPGAGKSTLAEFLEALLQQ-DGELPAIQVPMDGF 73 (229)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHhhh-ccCCceEEEecccc
Confidence 467777 499999999999999999998 7776655 777653
No 389
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=94.51 E-value=0.41 Score=38.30 Aligned_cols=67 Identities=12% Similarity=0.015 Sum_probs=41.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHH-HHHHHHHhcC--CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDA-RKGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~-~~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
..+.+-|.||++.-....+.......+|.++++.+.+. .++..+ ...++.+.+. +.++ .+|.|+.|.
T Consensus 51 ~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~pi-ilVgNK~DL 121 (182)
T cd04172 51 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LLVGCKSDL 121 (182)
T ss_pred EEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEeEChhh
Confidence 45678899998643221222333456888888877544 566665 4555555442 3444 489999985
No 390
>PLN02924 thymidylate kinase
Probab=94.49 E-value=0.09 Score=43.56 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=33.1
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
+++++.|+|- +--|+||||.+..|+..|.. .|.+|.++.
T Consensus 13 ~~~g~~IviE-GiDGsGKsTq~~~L~~~l~~-~g~~v~~~~ 51 (220)
T PLN02924 13 ESRGALIVLE-GLDRSGKSTQCAKLVSFLKG-LGVAAELWR 51 (220)
T ss_pred CCCCeEEEEE-CCCCCCHHHHHHHHHHHHHh-cCCCceeee
Confidence 4557788885 88899999999999999999 999986653
No 391
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.48 E-value=0.074 Score=43.25 Aligned_cols=33 Identities=36% Similarity=0.401 Sum_probs=26.9
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
+.++.+..|+||||+...+...+.. .|.+|+++
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~-~g~~v~~~ 52 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEA-AGKRVIGL 52 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHH-TT--EEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 4444577999999999999999999 89999988
No 392
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.46 E-value=0.062 Score=45.97 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=26.4
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
.++++-.|+||||+|..|...|.. .+.+|.+|+-|
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~-~~~~v~~i~~~ 38 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEE-KGKEVVIISDD 38 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHH-TT--EEEE-TH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHh-cCCEEEEEccc
Confidence 344689999999999999999999 99999999844
No 393
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.46 E-value=0.096 Score=45.96 Aligned_cols=41 Identities=22% Similarity=0.105 Sum_probs=29.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH--hCC---CeEEEEEeCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALAS--KCQ---LKVGLLDADVY 72 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~--~~g---~~VlliD~D~~ 72 (295)
-.|....+..|+||||++..++...+. ..| .+|+.||....
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 344444579999999999999874432 123 48999998764
No 394
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.45 E-value=0.053 Score=45.26 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=31.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC------CCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~------g~~VlliD~D~~ 72 (295)
+.++.+ .+..|+|||+++.+++..... . +.+|+.||.+..
T Consensus 19 g~i~~i-~G~~GsGKT~l~~~l~~~~~~-~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 19 GSITEI-FGEFGSGKTQLCHQLAVTVQL-PIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHeeC-ccccCCCCccEEEEeCCCC
Confidence 456655 588999999999999987654 4 379999999864
No 395
>PRK08116 hypothetical protein; Validated
Probab=94.45 E-value=0.067 Score=45.80 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=29.7
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
.+..+..|+|||.++..++..+.+ .|.+|+++++
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~-~~~~v~~~~~ 150 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIE-KGVPVIFVNF 150 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEH
Confidence 344578999999999999999999 8999999964
No 396
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=94.42 E-value=0.49 Score=39.26 Aligned_cols=67 Identities=10% Similarity=-0.028 Sum_probs=40.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHH-HHhc--CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGIT-MFSK--VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~-~l~~--~~~~~~~~ViN~~~~ 205 (295)
..+.+.|.||++......+.......+|.++++.+... .+++.+...+. .+.. .+.++ .+|.|+.|.
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~pi-iLVgnK~DL 117 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKV-VLVGCKLDM 117 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEEECccc
Confidence 45778899998643322222333457898888877655 46666643332 2322 34455 489999985
No 397
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.42 E-value=0.07 Score=44.73 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=31.7
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.+..+.-|+|||+++..++..+.+ .|.+|.++.++.
T Consensus 48 l~l~Gp~G~GKThLl~a~~~~~~~-~~~~v~y~~~~~ 83 (235)
T PRK08084 48 IYLWSREGAGRSHLLHAACAELSQ-RGRAVGYVPLDK 83 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEEHHH
Confidence 344589999999999999999999 899999998874
No 398
>PLN02759 Formate--tetrahydrofolate ligase
Probab=94.37 E-value=0.081 Score=49.40 Aligned_cols=69 Identities=26% Similarity=0.245 Sum_probs=47.8
Q ss_pred CCeEEEEee---CCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCC
Q 022525 30 VKDVIAVAS---GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYG 101 (295)
Q Consensus 30 ~~~vI~i~s---~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 101 (295)
.+|.|.|++ ..-|.||||++..|+.+|.++.|+++++- ..+|++--.||++....-.-...+.|.+..|
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~~---lRePSlGP~FGiKGGAaGGGysQv~Pme~iN 139 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTC---LRQPSQGPTFGIKGGAAGGGYSQVIPMEEFN 139 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEEE---eecCCcCCcCCcccccCCCcccccccHhhhc
Confidence 367666554 67899999999999999996579998765 4556766678887754433344444433333
No 399
>PRK06851 hypothetical protein; Provisional
Probab=94.36 E-value=0.13 Score=45.83 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=36.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~ 76 (295)
.+.+-+..+..|+||||+...++..+.+ +|.+|.+.-|-....++
T Consensus 213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~-~G~~v~~~hC~~dPdsl 257 (367)
T PRK06851 213 VKNRYFLKGRPGTGKSTMLKKIAKAAEE-RGFDVEVYHCGFDPDSL 257 (367)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCCc
Confidence 3455555688899999999999999999 99999999776554443
No 400
>PF05729 NACHT: NACHT domain
Probab=94.35 E-value=0.058 Score=41.98 Aligned_cols=27 Identities=41% Similarity=0.412 Sum_probs=23.2
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQ 61 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g 61 (295)
+.+..+.+|+||||++..++..++. .+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~-~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE-EE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh-cC
Confidence 3455799999999999999999998 54
No 401
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=94.34 E-value=0.14 Score=44.79 Aligned_cols=105 Identities=16% Similarity=0.093 Sum_probs=68.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
+.-+|||.|||+..--.--......-||..|+.+.....-++.+.+.--...-.|++-+.+-+|+.+...... .....
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e--~~F~~ 161 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE--EVFEA 161 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH--HHHHH
Confidence 5678999999974321111122344678999999988877777777666666689998889999998543321 10000
Q ss_pred CCchhhHHHHHhCCcEEEeecCCcccc
Q 022525 218 GKGGTHRTAAEMGLKVIGEIPIEMDIR 244 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~~Ip~~~~~~ 244 (295)
-......+.+.+|......||-+....
T Consensus 162 I~~dy~~fa~~L~~~~~~~IPiSAl~G 188 (431)
T COG2895 162 IVADYLAFAAQLGLKDVRFIPISALLG 188 (431)
T ss_pred HHHHHHHHHHHcCCCcceEEechhccC
Confidence 012244566677888888999765543
No 402
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=94.33 E-value=1.2 Score=39.48 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=30.1
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~ 75 (295)
|.+.++==|+||||+--++... . .|.++.+|-.|...-+
T Consensus 6 v~iltGFLGaGKTTll~~ll~~--~-~~~~iavi~Ne~G~~~ 44 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN--A-AGRRIAVIVNEFGDLG 44 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--c-CCCcEEEEECCCcccc
Confidence 4555678899999999988753 4 6889999987765533
No 403
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=94.33 E-value=0.4 Score=36.78 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=39.7
Q ss_pred CccEEEEcCCCCCCccc------hhhhhh--ccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQ------LTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~------~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+++.++|||+...... +....+ ..+|.++++...... .........+.+.+.+++ +|+|+.+.
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~i-iv~NK~Dl 113 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVV-VALNMIDE 113 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEE-EEEehhhh
Confidence 46799999996433211 112222 278999999887653 222334445555666665 99999995
No 404
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=94.32 E-value=0.28 Score=44.37 Aligned_cols=65 Identities=20% Similarity=0.044 Sum_probs=39.0
Q ss_pred ccEEEEcCCCCCCcc-------chhhhhhccCceEEEeeCCC----cchHHHHHHHHHHHhcC-----CCCeeeEEeccc
Q 022525 140 LDILVIDMPPGTGDA-------QLTTTQTLQLSGALIVSTPQ----DVALIDARKGITMFSKV-----QVPILGLVENMS 203 (295)
Q Consensus 140 yD~iiiD~~~~~~~~-------~~~~~~l~~ad~viiv~~~~----~~s~~~~~~~~~~l~~~-----~~~~~~~ViN~~ 203 (295)
..++++|+|+-.... ...+..+..+|.++.++... ...+......++.+... +.+. .+|+|+.
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~-IlVlNKi 285 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPR-WLVFNKI 285 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCE-EEEEeCC
Confidence 348999998643211 11223466789999988765 22344445555555542 3344 5899999
Q ss_pred cC
Q 022525 204 CF 205 (295)
Q Consensus 204 ~~ 205 (295)
+.
T Consensus 286 Dl 287 (390)
T PRK12298 286 DL 287 (390)
T ss_pred cc
Confidence 84
No 405
>PRK05636 replicative DNA helicase; Provisional
Probab=94.31 E-value=0.082 Score=49.43 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=34.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
--+.+.++..|+|||+++.++|...|.+.|++|+++.+.-..
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 455566799999999999999999885368999999877643
No 406
>PRK09866 hypothetical protein; Provisional
Probab=94.29 E-value=0.13 Score=48.83 Aligned_cols=67 Identities=16% Similarity=0.052 Sum_probs=43.5
Q ss_pred CCccEEEEcCCCCCCcc--c----hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCC-CeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDA--Q----LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQV-PILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~--~----~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~-~~~~~ViN~~~~ 205 (295)
..+.+|++|||+ +... . .....+..+|.|+.|+.....--..-....+.+.+.+. ..+.+|+|+++.
T Consensus 228 ~~~QIIFVDTPG-Ihk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 228 YPGQLTLLDTPG-PNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred ccCCEEEEECCC-CCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 468899999995 4321 1 23446778999999998875322222345566665552 234599999995
No 407
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.26 E-value=0.098 Score=41.59 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=28.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
++.+.| .+..|+|||++...+...++. .+.-++.++++..
T Consensus 24 ~~~~ll-~G~~G~GKT~ll~~~~~~~~~-~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLL-TGESGSGKTSLLRALLDRLAE-RGGYVISINCDDS 63 (185)
T ss_dssp ---EEE--B-TTSSHHHHHHHHHHHHHH-HT--EEEEEEETT
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCEEEEEEEecc
Confidence 344444 589999999999999999999 5444888888876
No 408
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=94.23 E-value=0.18 Score=43.93 Aligned_cols=42 Identities=33% Similarity=0.450 Sum_probs=36.6
Q ss_pred CeEEEEeeC-CCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASG-KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~-kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+||.|.|. -||+|||-++..||..|.+ +|.++.++.-.+-+
T Consensus 47 vPVI~VGNltvGGtGKTP~vi~la~~l~~-rG~~~gvvSRGYgg 89 (336)
T COG1663 47 VPVICVGNLTVGGTGKTPVVIWLAEALQA-RGVRVGVVSRGYGG 89 (336)
T ss_pred CCEEEEccEEECCCCcCHHHHHHHHHHHh-cCCeeEEEecCcCC
Confidence 477877664 5999999999999999999 99999999887765
No 409
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.23 E-value=0.06 Score=40.26 Aligned_cols=41 Identities=29% Similarity=0.254 Sum_probs=30.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhC-----CCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKC-----QLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~-----g~~VlliD~D~~~ 73 (295)
+.+.+..+..|+|||+++.+++..+.. . ..+|+.+++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNA-EAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHH-HHHHCCCEEEEEEEHHHHS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHH-hhhccCCCcEEEEEeCCCC
Confidence 344555699999999999999999986 4 6788888777654
No 410
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.23 E-value=0.1 Score=47.12 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=34.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+-+|+| ++..|+||||++..|...+.. .|.+|..|..|-..
T Consensus 212 PlIIGI-sG~qGSGKSTLa~~L~~lL~~-~g~~vgvISiDDfY 252 (460)
T PLN03046 212 PLVIGF-SAPQGCGKTTLVFALDYLFRV-TGRKSATLSIDDFY 252 (460)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHhcc-cCCceEEEEECCcc
Confidence 456666 588999999999999998888 78899999888654
No 411
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.23 E-value=0.07 Score=46.70 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=31.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEEeCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY 72 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~-----~g~~VlliD~D~~ 72 (295)
..|....+..|+|||+++..++...+.. .+.+|+.||+...
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 3455556899999999999999887630 1239999999864
No 412
>PF12846 AAA_10: AAA-like domain
Probab=94.22 E-value=0.076 Score=45.80 Aligned_cols=32 Identities=34% Similarity=0.386 Sum_probs=29.5
Q ss_pred eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 38 s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
.++-|+||||++.++...+.. .|..++++|..
T Consensus 7 ~G~tGsGKT~~~~~l~~~~~~-~g~~~~i~D~~ 38 (304)
T PF12846_consen 7 LGKTGSGKTTLLKNLLEQLIR-RGPRVVIFDPK 38 (304)
T ss_pred ECCCCCcHHHHHHHHHHHHHH-cCCCEEEEcCC
Confidence 489999999999999999999 99999999655
No 413
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.19 E-value=0.38 Score=38.38 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=29.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
+-++.+ .--|=||||-|..+|....- +|.+|++|-+
T Consensus 29 Gli~V~--TG~GKGKTTAAlG~alRa~G-hG~rv~vvQF 64 (198)
T COG2109 29 GLIIVF--TGNGKGKTTAALGLALRALG-HGLRVGVVQF 64 (198)
T ss_pred CeEEEE--ecCCCChhHHHHHHHHHHhc-CCCEEEEEEE
Confidence 344444 55688999999999999999 9999999954
No 414
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.19 E-value=0.073 Score=43.65 Aligned_cols=39 Identities=33% Similarity=0.424 Sum_probs=31.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
..+|+| ++-+|+||||+|..|...|.. . +|.+|-.|.-.
T Consensus 8 ~iiIgI-aG~SgSGKTTva~~l~~~~~~-~--~~~~I~~D~YY 46 (218)
T COG0572 8 VIIIGI-AGGSGSGKTTVAKELSEQLGV-E--KVVVISLDDYY 46 (218)
T ss_pred eEEEEE-eCCCCCCHHHHHHHHHHHhCc-C--cceEeeccccc
Confidence 357777 577889999999999988876 3 88899888655
No 415
>PRK09165 replicative DNA helicase; Provisional
Probab=94.18 E-value=0.079 Score=49.53 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=33.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHh--------------CCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASK--------------CQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~--------------~g~~VlliD~D~~~ 73 (295)
.-+.+.++..|+||||++.++|...|.. .|.+|+++.+.-..
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 3456668999999999999999999862 27889999877654
No 416
>PRK06217 hypothetical protein; Validated
Probab=94.17 E-value=0.054 Score=43.46 Aligned_cols=32 Identities=34% Similarity=0.491 Sum_probs=22.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.|.|+ +-.|+||||++..|+..+ |.. .+|+|.
T Consensus 3 ~I~i~-G~~GsGKSTla~~L~~~l----~~~--~~~~D~ 34 (183)
T PRK06217 3 RIHIT-GASGSGTTTLGAALAERL----DIP--HLDTDD 34 (183)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHc----CCc--EEEcCc
Confidence 34453 789999999999888544 444 577774
No 417
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.16 E-value=0.13 Score=50.43 Aligned_cols=37 Identities=32% Similarity=0.241 Sum_probs=32.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
+=.+++=+-.|+||||+-+.|-..|.- .|++||+.-.
T Consensus 685 edy~LI~GMPGTGKTTtI~~LIkiL~~-~gkkVLLtsy 721 (1100)
T KOG1805|consen 685 EDYALILGMPGTGKTTTISLLIKILVA-LGKKVLLTSY 721 (1100)
T ss_pred cchheeecCCCCCchhhHHHHHHHHHH-cCCeEEEEeh
Confidence 455666688999999999999999999 9999999853
No 418
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=94.15 E-value=0.068 Score=43.01 Aligned_cols=46 Identities=9% Similarity=0.182 Sum_probs=29.4
Q ss_pred HHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc
Q 022525 125 MSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV 176 (295)
Q Consensus 125 ~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~ 176 (295)
...+++++..+. .+|-+||+|.|--+. ...+..+..+++|+-+...
T Consensus 93 ~em~ke~~~~~l-~G~r~ivlDiPLLFE-----~~~~~~~~~tvvV~cd~~~ 138 (225)
T KOG3220|consen 93 KEMFKEILKLLL-RGYRVIVLDIPLLFE-----AKLLKICHKTVVVTCDEEL 138 (225)
T ss_pred HHHHHHHHHHHh-cCCeEEEEechHHHH-----HhHHhheeeEEEEEECcHH
Confidence 455666777776 899999999994222 2233456666666555443
No 419
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=94.12 E-value=0.069 Score=49.43 Aligned_cols=68 Identities=25% Similarity=0.223 Sum_probs=48.3
Q ss_pred CCeEEEEee---CCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCC
Q 022525 30 VKDVIAVAS---GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYG 101 (295)
Q Consensus 30 ~~~vI~i~s---~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 101 (295)
.+|.|.|++ ..-|.||||++..|+.+|.+ .|+++++. ..+|++--.||++....-.-...+.|.+..|
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~-lgk~~~~~---lRePSlGP~FGiKGGAaGGGysQv~Pme~iN 132 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGK-RGKKVSGA---IRQPSGGPTMNIKGSAAGGGLSQCIPLTPFS 132 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHh-hcCceEEE---EecCCcCCcCCcccccCCCccccccchhhcc
Confidence 367776655 57799999999999999999 99998765 4456766678887754444444444444333
No 420
>PRK06921 hypothetical protein; Provisional
Probab=94.12 E-value=0.088 Score=45.01 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=30.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDA 69 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~ 69 (295)
.-+.++ +.-|+|||+++..+|..+.+ . |.+|+.+.+
T Consensus 118 ~~l~l~-G~~G~GKThLa~aia~~l~~-~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALL-GQPGSGKTHLLTAAANELMR-KKGVPVLYFPF 154 (266)
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHHhh-hcCceEEEEEH
Confidence 445554 67899999999999999998 7 999998864
No 421
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=94.10 E-value=0.08 Score=43.23 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=42.0
Q ss_pred ccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 140 yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+-+.++|||+...........+..+|.+++|++.... ........+..+...+.+.+.+|+|+.|.
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 6789999997433212233445567999999887752 22233445555555565555589999984
No 422
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.09 E-value=0.088 Score=42.74 Aligned_cols=36 Identities=33% Similarity=0.508 Sum_probs=28.1
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
|++ ++..|+||||++..|+..+ . +.++.++.+|...
T Consensus 2 igi-~G~~GsGKSTl~~~l~~~l-~--~~~~~v~~~D~~~ 37 (198)
T cd02023 2 IGI-AGGSGSGKTTVAEEIIEQL-G--NPKVVIISQDSYY 37 (198)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh-C--CCCeEEEEecccc
Confidence 555 4779999999999998887 3 4578888888543
No 423
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.62 Score=44.32 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=46.5
Q ss_pred cEEEEcCCCCCCcc----chhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCC
Q 022525 141 DILVIDMPPGTGDA----QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICP 208 (295)
Q Consensus 141 D~iiiD~~~~~~~~----~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~ 208 (295)
|++++|.|+ ++.+ .|...-...+|.+|+|+.....-......++....+. -|.+.+|.|++|..+.
T Consensus 207 DivliDsPG-ld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPG-LDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCC-CCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEEEEechhhhhcc
Confidence 999999994 4422 3444455578999999998887766666666665544 4555688999985533
No 424
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.03 E-value=0.055 Score=42.69 Aligned_cols=33 Identities=36% Similarity=0.372 Sum_probs=23.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.|.+ .+..|+||||++..||..+.- .++|.|.
T Consensus 5 ~~i~l-~G~~GsGKstla~~La~~l~~------~~~d~d~ 37 (175)
T PRK00131 5 PNIVL-IGFMGAGKSTIGRLLAKRLGY------DFIDTDH 37 (175)
T ss_pred CeEEE-EcCCCCCHHHHHHHHHHHhCC------CEEEChH
Confidence 44444 589999999999988877633 4456663
No 425
>PRK11058 GTPase HflX; Provisional
Probab=94.02 E-value=0.45 Score=43.61 Aligned_cols=64 Identities=20% Similarity=0.124 Sum_probs=37.5
Q ss_pred cEEEEcCCCCCCc-c--c-----hhhhhhccCceEEEeeCCCcch-HHHH---HHHHHHHhcCCCCeeeEEeccccC
Q 022525 141 DILVIDMPPGTGD-A--Q-----LTTTQTLQLSGALIVSTPQDVA-LIDA---RKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 141 D~iiiD~~~~~~~-~--~-----~~~~~l~~ad~viiv~~~~~~s-~~~~---~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.++++||++.... . . .+......||.+++|.+.+... .... ...++.+...+.+++ +|+|+.|.
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvI-iV~NKiDL 321 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTL-LVMNKIDM 321 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEE-EEEEcccC
Confidence 5788999865332 0 0 1122345689898888876543 2332 234444433345554 99999995
No 426
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=93.95 E-value=0.034 Score=51.45 Aligned_cols=52 Identities=29% Similarity=0.284 Sum_probs=34.6
Q ss_pred CCeEEEEee---CCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC
Q 022525 30 VKDVIAVAS---GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85 (295)
Q Consensus 30 ~~~vI~i~s---~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~ 85 (295)
.+|.|.|++ ..-|.||||++..|+.+|.+ .|+++.+. ..+|++--.||++..
T Consensus 53 ~gklilVTaitPTp~GEGKtTttiGL~~al~~-lg~~~~~~---lRePSlGP~fG~KGG 107 (557)
T PF01268_consen 53 DGKLILVTAITPTPAGEGKTTTTIGLAQALNR-LGKKAIAA---LREPSLGPVFGIKGG 107 (557)
T ss_dssp --EEEEEEESS--TTS-SHHHHHHHHHHHHHH-TT--EEEE---E----CHHHHCST-S
T ss_pred CCcEEEEEecCCCCCCCCceeHHHHHHHHHHh-cCCceEEE---EecCCCCCccCcccc
Confidence 478777765 56799999999999999999 99998765 456777777888864
No 427
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=93.94 E-value=0.18 Score=46.38 Aligned_cols=65 Identities=18% Similarity=0.084 Sum_probs=38.2
Q ss_pred CCccEEEEcCCCCCCcc-ch-------hhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDA-QL-------TTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~-~~-------~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+++.+.|+|||+-.... .+ ....+..+|.+++|.+.+.. +.... .+..+...+.+++ +|+||.|.
T Consensus 249 ~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~~~piI-lV~NK~Dl 322 (442)
T TIGR00450 249 NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNKSKKPFI-LVLNKIDL 322 (442)
T ss_pred CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhhCCCCEE-EEEECccC
Confidence 44667899998532211 11 12345578999988776543 33332 4444444455654 99999985
No 428
>PLN02796 D-glycerate 3-kinase
Probab=93.93 E-value=0.11 Score=45.78 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=33.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+-+|+|. +..|+||||++..|...+.. .|.++..|-.|-..
T Consensus 100 pliIGI~-G~sGSGKSTLa~~L~~lL~~-~g~~~g~IsiDdfY 140 (347)
T PLN02796 100 PLVIGIS-APQGCGKTTLVFALVYLFNA-TGRRAASLSIDDFY 140 (347)
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHhcc-cCCceeEEEECCcc
Confidence 4566664 88999999999999999988 78888888777543
No 429
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=93.88 E-value=0.3 Score=45.16 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=37.7
Q ss_pred CCccEEEEcCCCCCCccc--------hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 138 GNLDILVIDMPPGTGDAQ--------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~--------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
+++.+.|+|||+...... .+...+..+|.+++|.+.+......-...+.. ..+.++ .+|+||.|..
T Consensus 261 ~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~pi-iiV~NK~DL~ 334 (449)
T PRK05291 261 DGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPV-IVVLNKADLT 334 (449)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCc-EEEEEhhhcc
Confidence 456689999995322111 02234557899999988765422222222222 234454 4999999853
No 430
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.83 E-value=0.13 Score=41.34 Aligned_cols=35 Identities=31% Similarity=0.305 Sum_probs=29.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
+|+|. +--|+||||++..|+..|.. .|.+|..+..
T Consensus 2 ~I~ie-G~~GsGKtT~~~~L~~~l~~-~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFE-GIDGAGKTTLIELLAERLEA-RGYEVVLTRE 36 (200)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 45554 78899999999999999998 9999976644
No 431
>PRK07004 replicative DNA helicase; Provisional
Probab=93.83 E-value=0.096 Score=48.47 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=34.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
--+.+.++..|+|||+++.++|..+|...|++|+++.+.-..
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~ 254 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG 254 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 345566799999999999999999885379999999877654
No 432
>PRK06761 hypothetical protein; Provisional
Probab=93.81 E-value=0.099 Score=44.90 Aligned_cols=39 Identities=36% Similarity=0.499 Sum_probs=30.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEE-EEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL-LDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vll-iD~D~ 71 (295)
.++|.| .+..|+||||++..|+..|.. .|.++.. .+.|.
T Consensus 3 ~~lIvI-~G~~GsGKTTla~~L~~~L~~-~g~~v~~~~~~~~ 42 (282)
T PRK06761 3 TKLIII-EGLPGFGKSTTAKMLNDILSQ-NGIEVELYLEGNL 42 (282)
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHhcCc-CceEEEEEecCCC
Confidence 355555 567889999999999999988 8888865 45454
No 433
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.77 E-value=0.097 Score=45.99 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=31.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhC------CCeEEEEEeCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADVY 72 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~------g~~VlliD~D~~ 72 (295)
..|....+..|+|||+++.++++..+. . +.+|++||++..
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~-~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQL-PEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhcc-ccccCCCCceEEEEeCCCC
Confidence 344555689999999999999988765 3 349999999864
No 434
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=93.77 E-value=0.09 Score=48.88 Aligned_cols=68 Identities=12% Similarity=0.075 Sum_probs=45.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.++++|||+...........+..+|.+++|+.....-...+.+.+..+...+.+.+.+++|++|.
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~ 172 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDL 172 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecc
Confidence 56789999999743321223445678899999988766433334445555555666666689999995
No 435
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.74 E-value=0.093 Score=45.11 Aligned_cols=42 Identities=31% Similarity=0.379 Sum_probs=29.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCC-eEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~-~VlliD~D~~~ 73 (295)
.++|+|+ +-||+||||+|..++........+ .++-|++....
T Consensus 19 ~~~v~I~-G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~ 61 (287)
T PF00931_consen 19 VRVVAIV-GMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP 61 (287)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S
T ss_pred eEEEEEE-cCCcCCcceeeeeccccccccccccccccccccccc
Confidence 4777775 889999999999999875541222 46667776543
No 436
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.72 E-value=0.12 Score=53.55 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=28.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
.++|+|+ +.||+||||+|..++..++. .-.-.+.+|
T Consensus 207 ~~vvgI~-G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~ 242 (1153)
T PLN03210 207 VRMVGIW-GSSGIGKTTIARALFSRLSR-QFQSSVFID 242 (1153)
T ss_pred eEEEEEE-cCCCCchHHHHHHHHHHHhh-cCCeEEEee
Confidence 6889887 88999999999999988877 433334454
No 437
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.68 E-value=0.061 Score=41.45 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=24.2
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+..+..|+||||++..|+..+ + ..++|.|.-.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~----~--~~~i~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL----G--APFIDGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc----C--CEEEeCcccc
Confidence 3556999999999999887653 2 2567877654
No 438
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=93.67 E-value=1.4 Score=38.66 Aligned_cols=141 Identities=17% Similarity=0.133 Sum_probs=72.5
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccCCC
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSS 114 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (295)
.+.++==|+||||+-.+|- ++..|+|+.+|=-+...-++. . ..........+.-++
T Consensus 4 tvitGFLGsGKTTlL~~lL---~~~~g~kiAVIVNEfGEvgID------~-------~~~l~~~~e~~~El~-------- 59 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLL---ANRDGKKIAVIVNEFGEVGID------G-------GALLSDTGEEVVELT-------- 59 (323)
T ss_pred EEEeecCCCCHHHHHHHHH---hccCCCcEEEEEecCcccccc------C-------CCccccCCccEEEeC--------
Confidence 4445556899999988764 443588998886665442222 1 000000111111111
Q ss_pred CCCccC--CchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchh--------hhhhccCceEEEeeCCCcchHHH---H
Q 022525 115 SPVVWR--GPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT--------TTQTLQLSGALIVSTPQDVALID---A 181 (295)
Q Consensus 115 ~~~~~~--~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~--------~~~l~~ad~viiv~~~~~~s~~~---~ 181 (295)
..+.|. .......+..+.+ .+ +.+|+|||.+.+-..+.... +.....-|.+|-++.+..+.-.. .
T Consensus 60 nGCICCT~r~dl~~~~~~L~~-~~-~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~ 137 (323)
T COG0523 60 NGCICCTVRDDLLPALERLLR-RR-DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIA 137 (323)
T ss_pred CceEEEeccchhHHHHHHHHh-cc-CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHH
Confidence 122221 1234566677777 55 77999999999544431111 11112335567777766653211 1
Q ss_pred HHHHHHHhcCCCCeeeEEeccccC
Q 022525 182 RKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 182 ~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+++.-.+ .+|+||.+.
T Consensus 138 ~~~~~Qia~AD----~ivlNK~Dl 157 (323)
T COG0523 138 ELAEDQLAFAD----VIVLNKTDL 157 (323)
T ss_pred HHHHHHHHhCc----EEEEecccC
Confidence 23333433232 389999984
No 439
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=93.64 E-value=0.2 Score=45.09 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=33.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.+|+|+ +..|+||||++..|...|.. + .+|.+|..+..
T Consensus 5 ~~~i~i~-G~~gsGKTTl~~~l~~~l~~-~-~~V~~ik~~~~ 43 (369)
T PRK14490 5 PFEIAFC-GYSGSGKTTLITALVRRLSE-R-FSVGYYKHGCH 43 (369)
T ss_pred CEEEEEE-eCCCCCHHHHHHHHHHHHhh-C-ceEEEEEeCCC
Confidence 5788887 55899999999999999999 8 99999986543
No 440
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.59 E-value=0.6 Score=38.71 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=28.5
Q ss_pred eCCCCCcHHHHHHHHHHHHHHh----CCCeEEEEEeC
Q 022525 38 SGKGGVGKSTTAVNLAVALASK----CQLKVGLLDAD 70 (295)
Q Consensus 38 s~kGGvGKTt~a~~LA~~la~~----~g~~VlliD~D 70 (295)
=+..||||||+-..+|..++.- .++||++||--
T Consensus 143 igpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer 179 (308)
T COG3854 143 IGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER 179 (308)
T ss_pred ecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc
Confidence 3889999999999999999963 47999999754
No 441
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.59 E-value=0.12 Score=42.42 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=27.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+|+|. +..|+||||++..|+..+.. ..+.++..|.
T Consensus 6 g~vi~I~-G~sGsGKSTl~~~l~~~l~~---~~~~~i~~D~ 42 (207)
T TIGR00235 6 GIIIGIG-GGSGSGKTTVARKIYEQLGK---LEIVIISQDN 42 (207)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHHHhcc---cCCeEecccc
Confidence 5777775 89999999999999877653 3455565554
No 442
>COG2229 Predicted GTPase [General function prediction only]
Probab=93.57 E-value=2.5 Score=33.57 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=45.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
+++.+-++|+|+......+-......+...|+++.....--..+..+++.+.......+.+.+|+.+..
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~ 134 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLF 134 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccC
Confidence 557888999997654323333334456766666665554444788888888876633445999998843
No 443
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=93.56 E-value=0.14 Score=45.65 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=48.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHH------H-HHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI------D-ARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~------~-~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
+.|.+.|+|||+.-+..--.+.....||..|+|+......++ + +...+-..+..|+..+.+.+|+.|..
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v 158 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLV 158 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccccc
Confidence 778899999997444322345566678999999888877433 2 23333444557888888999999853
No 444
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=93.55 E-value=0.081 Score=44.16 Aligned_cols=27 Identities=44% Similarity=0.528 Sum_probs=22.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALAS 58 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~ 58 (295)
..|.+.++-.||||||+|..+|..|.-
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rLgI 115 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRLGI 115 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHcCC
Confidence 577777999999999999988876653
No 445
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.53 E-value=0.053 Score=41.27 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=23.5
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.++.+..|+||||++..|+.. .| ..+||.|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~----~~--~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR----LG--AVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH----ST--EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH----CC--CEEEeHHH
Confidence 3456799999999998876543 44 46688886
No 446
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.27 Score=45.56 Aligned_cols=68 Identities=15% Similarity=0.078 Sum_probs=52.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
..|-+=+||||+..+.+.-....+.+||.+++++.+.+.-...+....-..-+.++.++ .|+|+++.+
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iI-pVlNKIDlp 190 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAII-PVLNKIDLP 190 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEE-EeeeccCCC
Confidence 56889999999988766555566778999999999988766666555444455777776 999999954
No 447
>PLN02200 adenylate kinase family protein
Probab=93.51 E-value=0.13 Score=43.15 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 22 SKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 22 ~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
..+..+......+.++.+..|+||||+|..||..+
T Consensus 33 ~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 33 ERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred cccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33333333334566667999999999999887543
No 448
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=93.47 E-value=0.11 Score=48.96 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=57.7
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEecccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSC 204 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~ 204 (295)
+.|=+-|+|||+..+...-+...+..+|.+++++.....-+..+.+.++..-+.+.++. +|+|+++
T Consensus 195 KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~-vviNKiD 260 (971)
T KOG0468|consen 195 KSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIV-VVINKVD 260 (971)
T ss_pred ceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEE-EEEehhH
Confidence 67888999999988876667788888999999999999889999999999888887775 9999987
No 449
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=93.44 E-value=0.54 Score=38.71 Aligned_cols=32 Identities=44% Similarity=0.446 Sum_probs=25.8
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHhCCCe--EEEEE
Q 022525 36 VASGKGGVGKSTTAVNLAVALASKCQLK--VGLLD 68 (295)
Q Consensus 36 i~s~kGGvGKTt~a~~LA~~la~~~g~~--VlliD 68 (295)
++++-.-.||||-|.+|..+|+. +|.| |.++|
T Consensus 5 vi~G~P~SGKstrA~~L~~~l~~-~~~K~~v~ii~ 38 (281)
T KOG3062|consen 5 VICGLPCSGKSTRAVELREALKE-RGTKQSVRIID 38 (281)
T ss_pred EEeCCCCCCchhHHHHHHHHHHh-hcccceEEEec
Confidence 44578889999999999999999 8854 55553
No 450
>PTZ00301 uridine kinase; Provisional
Probab=93.43 E-value=0.19 Score=41.26 Aligned_cols=42 Identities=33% Similarity=0.593 Sum_probs=30.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCC-eEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~-~VlliD~D~~~ 73 (295)
..+|+| ++-.|+||||+|..|+..+....|- .|+++-.|...
T Consensus 3 ~~iIgI-aG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 3 CTVIGI-SGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CEEEEE-ECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 367777 5788999999999999888541453 45577666543
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.42 E-value=1.4 Score=35.72 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=25.4
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 35 ~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
.++++..|+||||+...|...+....+.+++.++
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 4556899999999999988888761345666554
No 452
>PF13173 AAA_14: AAA domain
Probab=93.39 E-value=0.13 Score=38.49 Aligned_cols=39 Identities=28% Similarity=0.305 Sum_probs=30.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+++.+. +.-||||||++.+++..+. ...+++.+|+|-..
T Consensus 3 ~~~~l~-G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILT-GPRGVGKTTLLKQLAKDLL--PPENILYINFDDPR 41 (128)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHhc--ccccceeeccCCHH
Confidence 555664 6778999999999988776 24588999988543
No 453
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.30 E-value=0.1 Score=41.14 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=25.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
++.|.++ +-.|+||||++..||..+ |. -++|.|..
T Consensus 2 ~~~i~~~-G~~GsGKst~~~~la~~l----g~--~~~d~D~~ 36 (171)
T PRK03731 2 TQPLFLV-GARGCGKTTVGMALAQAL----GY--RFVDTDQW 36 (171)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHh----CC--CEEEccHH
Confidence 3556664 889999999999887665 33 35687753
No 454
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=93.27 E-value=0.28 Score=42.19 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=64.8
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccccC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (295)
-|++. +-..|||||++-+ . -|.||..+....+. ..+..+|+-.
T Consensus 74 ~vavI-G~PNvGKStLtN~------m-ig~kv~~vS~K~~T-Tr~~ilgi~t---------------------------- 116 (379)
T KOG1423|consen 74 YVAVI-GAPNVGKSTLTNQ------M-IGQKVSAVSRKVHT-TRHRILGIIT---------------------------- 116 (379)
T ss_pred EEEEE-cCCCcchhhhhhH------h-hCCccccccccccc-eeeeeeEEEe----------------------------
Confidence 45555 7789999999984 4 68899888766654 3333333210
Q ss_pred CCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccc------------hhhhhhccCceEEEeeCCCcchHHH
Q 022525 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ------------LTTTQTLQLSGALIVSTPQDVALID 180 (295)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~------------~~~~~l~~ad~viiv~~~~~~s~~~ 180 (295)
..++.+|++|||+-++... -...++..||.++++.+.....-.-
T Consensus 117 ------------------------s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l 172 (379)
T KOG1423|consen 117 ------------------------SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPL 172 (379)
T ss_pred ------------------------cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCcc
Confidence 1667788888887554321 1223455789888888777422111
Q ss_pred HHHHHHHHhcC-CCCeeeEEeccccC
Q 022525 181 ARKGITMFSKV-QVPILGLVENMSCF 205 (295)
Q Consensus 181 ~~~~~~~l~~~-~~~~~~~ViN~~~~ 205 (295)
--+.+..++.. .++-+ +|.|+++.
T Consensus 173 ~p~vl~~l~~ys~ips~-lvmnkid~ 197 (379)
T KOG1423|consen 173 HPRVLHMLEEYSKIPSI-LVMNKIDK 197 (379)
T ss_pred ChHHHHHHHHHhcCCce-eeccchhc
Confidence 12333333332 23433 67787763
No 455
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.24 E-value=0.21 Score=40.57 Aligned_cols=35 Identities=29% Similarity=0.232 Sum_probs=29.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
++.|+|. +--|+||||++..|+..|.. .|..|...
T Consensus 3 ~~~I~ie-G~~gsGKsT~~~~L~~~l~~-~~~~~~~~ 37 (205)
T PRK00698 3 GMFITIE-GIDGAGKSTQIELLKELLEQ-QGRDVVFT 37 (205)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCceeEe
Confidence 4677775 88899999999999999998 88776654
No 456
>PLN02348 phosphoribulokinase
Probab=93.21 E-value=0.22 Score=44.64 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=31.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCC---------------CeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ---------------LKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g---------------~~VlliD~D~~ 72 (295)
.-+|+| ++-.|+||||++..|+..|.. .+ ..+.+|-+|-.
T Consensus 49 p~IIGI-aG~SGSGKSTfA~~L~~~Lg~-~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 49 TVVIGL-AADSGCGKSTFMRRLTSVFGG-AAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHHhh-ccCCCccccccccccccCceEEEEcccc
Confidence 456666 588999999999999999976 42 46778877744
No 457
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=93.17 E-value=0.12 Score=48.26 Aligned_cols=69 Identities=25% Similarity=0.268 Sum_probs=48.3
Q ss_pred CCeEEEEee---CCCCCcHHHHHHHHHHHHH-HhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCc
Q 022525 30 VKDVIAVAS---GKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGV 102 (295)
Q Consensus 30 ~~~vI~i~s---~kGGvGKTt~a~~LA~~la-~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 102 (295)
.+|.|.|++ ..-|.||||++..|+.+|. + .|+++.+- ..+|++--.||++....-.-...+.|.+..|+
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~-lgk~~~~~---lRePSlGP~FGiKGGAaGGGysQv~Pme~iNL 139 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAH-LHRKTFAC---IRQPSQGPTFGIKGGAAGGGYSQVIPMEDFNL 139 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHH-hCcceEEE---EecCCcCCcCCcccccCCCccccccchhhccc
Confidence 367666554 5789999999999999999 7 89998765 34566666688887544444444555444443
No 458
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=93.12 E-value=0.15 Score=49.19 Aligned_cols=41 Identities=29% Similarity=0.252 Sum_probs=35.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+++|.+ .+..|+||||+|..|+..|.. .|..+.++|.|.-.
T Consensus 460 ~~~i~~-~G~~gsGKst~a~~l~~~l~~-~~~~~~~l~~D~~r 500 (632)
T PRK05506 460 PATVWF-TGLSGSGKSTIANLVERRLHA-LGRHTYLLDGDNVR 500 (632)
T ss_pred cEEEEe-cCCCCchHHHHHHHHHHHHHH-cCCCEEEEcChhhh
Confidence 566666 588899999999999999998 89999999988654
No 459
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.10 E-value=0.14 Score=45.69 Aligned_cols=38 Identities=32% Similarity=0.387 Sum_probs=30.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHH--HHhCCCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVAL--ASKCQLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~l--a~~~g~~VlliD~D 70 (295)
|.+.++.+-.|+|||.++.+|+..+ .. .+.+++++-..
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~-~~~~~~~l~~n 40 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSE-EGKKVLYLCGN 40 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccc-cCCceEEEEec
Confidence 4567778999999999999999999 66 67777766443
No 460
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=93.07 E-value=0.29 Score=40.12 Aligned_cols=67 Identities=15% Similarity=0.057 Sum_probs=37.8
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHH-HHHHHHHHhcCC--CCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALID-ARKGITMFSKVQ--VPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~-~~~~~~~l~~~~--~~~~~~ViN~~~~ 205 (295)
.+++.++|+++-.....+...-...++.++++..... .+... .......+.... .-.+.+|.|+.+.
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl 123 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccc
Confidence 4668899998543321222233346777777777664 34333 344444544433 2344599999884
No 461
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.06 E-value=0.18 Score=47.34 Aligned_cols=40 Identities=28% Similarity=0.269 Sum_probs=34.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.| .+..|+|||+++.+++...++ .|.+|++|+++..
T Consensus 273 g~~~li-~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~ 312 (509)
T PRK09302 273 GSIILV-SGATGTGKTLLASKFAEAACR-RGERCLLFAFEES 312 (509)
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCC
Confidence 455555 578999999999999999999 9999999998754
No 462
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.03 E-value=0.16 Score=47.68 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=34.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D~~~ 73 (295)
+.++.+ .+..|+|||+++.++++..+. + |.+|++|.++...
T Consensus 31 Gs~~li-~G~pGsGKT~l~~qf~~~~~~-~~ge~~lyis~ee~~ 72 (509)
T PRK09302 31 GRPTLV-SGTAGTGKTLFALQFLVNGIK-RFDEPGVFVTFEESP 72 (509)
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHH-hcCCCEEEEEccCCH
Confidence 455555 588999999999999998888 6 9999999988754
No 463
>PRK07933 thymidylate kinase; Validated
Probab=93.01 E-value=0.22 Score=41.07 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=30.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
.|+| -+--|+||||.+..|+..|.. .|.+|.++..-
T Consensus 2 ~Ivi-EG~dGsGKST~~~~L~~~L~~-~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAI-EGVDGAGKRTLTEALRAALEA-RGRSVATLAFP 37 (213)
T ss_pred EEEE-EcCCCCCHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 3455 477899999999999999999 99999988764
No 464
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.96 E-value=0.11 Score=38.55 Aligned_cols=21 Identities=48% Similarity=0.466 Sum_probs=18.1
Q ss_pred EeeCCCCCcHHHHHHHHHHHH
Q 022525 36 VASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 36 i~s~kGGvGKTt~a~~LA~~l 56 (295)
+.++..|+||||++..|+..+
T Consensus 2 ~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 2 GISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 346889999999999888886
No 465
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=92.91 E-value=0.14 Score=47.26 Aligned_cols=67 Identities=7% Similarity=0.086 Sum_probs=47.6
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+.+.+||+|+...........+..+|.+++|+.+... ....+.+.+..++..+++.+.+++|++|.
T Consensus 116 ~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDl 183 (460)
T PTZ00327 116 KRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDL 183 (460)
T ss_pred cceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccc
Confidence 45689999997533222334556678999999998864 34455666666777788776799999984
No 466
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.91 E-value=0.21 Score=47.51 Aligned_cols=41 Identities=39% Similarity=0.381 Sum_probs=33.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.+|.++ +-.|+||||++..||..|....|.++.++|.|.-
T Consensus 392 g~~Ivl~-Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 392 GFTVFFT-GLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CeEEEEE-CCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 5677664 8999999999999999998535778999988844
No 467
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.90 E-value=0.12 Score=37.52 Aligned_cols=21 Identities=48% Similarity=0.545 Sum_probs=18.9
Q ss_pred eCCCCCcHHHHHHHHHHHHHH
Q 022525 38 SGKGGVGKSTTAVNLAVALAS 58 (295)
Q Consensus 38 s~kGGvGKTt~a~~LA~~la~ 58 (295)
.+..|+|||+++..|+..+.+
T Consensus 4 ~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 4 YGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 466699999999999999998
No 468
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=92.86 E-value=0.41 Score=37.17 Aligned_cols=67 Identities=10% Similarity=-0.003 Sum_probs=41.9
Q ss_pred CCccEEEEcCCCCCCcc-------c----hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDA-------Q----LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~-------~----~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
...++.++|||+..... . .....+..+|.++++..............+..+...+.+++ +|+|+.+.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl 125 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALV-IVVNKWDL 125 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEE-EEEecccc
Confidence 34568999998632210 0 11223457899999988766544444455666655666655 89999984
No 469
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=92.83 E-value=0.52 Score=46.55 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=55.3
Q ss_pred CCccEEEEcCCCCCCccch----------hhhh--hccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQL----------TTTQ--TLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~----------~~~~--l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.++++.++|+|+..+.... .... ...+|.++.|++.+.. +.......++.+.+.|.+ +++||.|.
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvI-vVlNK~Dl 124 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCI-VALNMLDI 124 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEE-EEEEchhh
Confidence 5678999999975442110 1111 1268999999887653 333345556667787765 99999994
Q ss_pred CCCCCCCCccccCCchhhHHHHHhCCcEEE
Q 022525 206 ICPHCSEPSFIFGKGGTHRTAAEMGLKVIG 235 (295)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 235 (295)
.... .. ....+++.+.+|.+++.
T Consensus 125 ~~~~------~i-~id~~~L~~~LG~pVvp 147 (772)
T PRK09554 125 AEKQ------NI-RIDIDALSARLGCPVIP 147 (772)
T ss_pred hhcc------Cc-HHHHHHHHHHhCCCEEE
Confidence 2110 11 13467788889998775
No 470
>PRK13973 thymidylate kinase; Provisional
Probab=92.82 E-value=0.3 Score=40.19 Aligned_cols=35 Identities=31% Similarity=0.302 Sum_probs=30.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
++.|+| =+--|+||||.+..|+..|.. .|.+|...
T Consensus 3 g~~Ivi-EG~dGsGKtTq~~~l~~~l~~-~g~~~~~~ 37 (213)
T PRK13973 3 GRFITF-EGGEGAGKSTQIRLLAERLRA-AGYDVLVT 37 (213)
T ss_pred ceEEEE-EcCCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 567777 478899999999999999999 99999766
No 471
>PTZ00369 Ras-like protein; Provisional
Probab=92.82 E-value=2.9 Score=33.41 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=40.7
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
..+.+-|+|+|+.-.........+..+|.++++...+. .++..+...++.+.+. +.++ .+|.|+.+.
T Consensus 51 ~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~Dl 122 (189)
T PTZ00369 51 ETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPM-ILVGNKCDL 122 (189)
T ss_pred EEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 34567789998654432222234456788888866544 4566666655555432 3444 589999984
No 472
>PRK06547 hypothetical protein; Provisional
Probab=92.78 E-value=0.13 Score=40.87 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=19.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVA 55 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~ 55 (295)
+.+|+|. +..|+||||++..|+..
T Consensus 15 ~~~i~i~-G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 15 MITVLID-GRSGSGKTTLAGALAAR 38 (172)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHH
Confidence 4666665 89999999999888765
No 473
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=92.78 E-value=0.27 Score=39.54 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=39.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.++|||+...........+..+|.+++|+......-......+......+.+++ +|+|+.+.
T Consensus 66 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl 132 (192)
T cd01889 66 ENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLI-VVLNKIDL 132 (192)
T ss_pred cCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 57899999999642211111223345789999988765322222233334444456554 99999984
No 474
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=92.77 E-value=0.27 Score=46.96 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=47.0
Q ss_pred cEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 141 DILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 141 D~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+.|+|||+..............+|.+++|...+......+...+..+...+.|++ +++|+.|.
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiI-VviNKiDl 199 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPII-VAINKIDK 199 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEE-EEEECccc
Confidence 68999999765433333344567899999998876666666677777777788854 99999984
No 475
>PRK06851 hypothetical protein; Provisional
Probab=92.74 E-value=0.32 Score=43.40 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=37.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~ 77 (295)
.+.+.+.++..|+||||+...++..+.+ .|.+|-.+=|-....++.
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~-~g~~Ve~~~~~~d~~slD 74 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLE-KGYDVEFLHCSSDNDSLD 74 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEcCCCCCcee
Confidence 4556677899999999999999999999 899998886666665554
No 476
>PRK07261 topology modulation protein; Provisional
Probab=92.74 E-value=0.14 Score=40.63 Aligned_cols=21 Identities=48% Similarity=0.578 Sum_probs=16.4
Q ss_pred EEEeeCCCCCcHHHHHHHHHHH
Q 022525 34 IAVASGKGGVGKSTTAVNLAVA 55 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~ 55 (295)
|.|+ +.+|+||||++..|+..
T Consensus 3 i~i~-G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 3 IAII-GYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEE-cCCCCCHHHHHHHHHHH
Confidence 4444 79999999999988644
No 477
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.67 E-value=0.15 Score=40.85 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=19.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
.++|+|.+ ..|+||||++..|+..+
T Consensus 3 ~~ii~i~G-~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVG-GPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEEC-CCCCCHHHHHHHHHHHh
Confidence 46777764 59999999999887654
No 478
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.67 E-value=0.14 Score=41.58 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=23.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
.+.++++..|+||||++..||..+ |..+ ++..|
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~----~~~~-~~~~D 36 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR----AIDI-VLSGD 36 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----CCeE-EehhH
Confidence 345557999999999999777653 4443 45555
No 479
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=92.66 E-value=0.13 Score=41.79 Aligned_cols=40 Identities=30% Similarity=0.415 Sum_probs=27.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+++.|+.+-.|+||||++..+...+. +...+.||.|.-.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~---~~~~v~i~~D~~r 53 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG---GGGIVVIDADEFR 53 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT----TT-SEEE-GGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc---CCCeEEEehHHHH
Confidence 477777889999999999997755443 5678889988643
No 480
>PRK12338 hypothetical protein; Provisional
Probab=92.56 E-value=0.14 Score=44.67 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=23.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.+.++++..|+||||+|..||..+ |.+. +++.|..
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l----~~~~-~~~tD~~ 39 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTL----NIKH-LIETDFI 39 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCeE-EccChHH
Confidence 455557999999999999777655 4443 4455543
No 481
>PRK04040 adenylate kinase; Provisional
Probab=92.53 E-value=0.17 Score=40.86 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=21.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la 57 (295)
+++|+|+ +-.|+||||++..|+..+.
T Consensus 2 ~~~i~v~-G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVT-GVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEE-eCCCCCHHHHHHHHHHHhc
Confidence 4666665 7899999999999888774
No 482
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=92.50 E-value=0.2 Score=41.78 Aligned_cols=31 Identities=32% Similarity=0.314 Sum_probs=26.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
+|+|+ |+.||||+...||..|.. +|++|++-
T Consensus 1 vi~~v---G~gGKTtl~~~l~~~~~~-~g~~v~~T 31 (232)
T TIGR03172 1 VIAFV---GAGGKTSTMFWLAAEYRK-EGYRVLVT 31 (232)
T ss_pred CEEEE---cCCcHHHHHHHHHHHHHH-CCCeEEEE
Confidence 35555 458999999999999999 99999875
No 483
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=92.48 E-value=0.32 Score=41.27 Aligned_cols=41 Identities=34% Similarity=0.375 Sum_probs=34.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCe--EEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK--VGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~--VlliD~D~~~ 73 (295)
+-+|++ ++.-|+||||+|..|...+++ .+.+ |-+|-+|...
T Consensus 82 pfIIgi-aGsvavGKST~ar~L~~ll~~-~~~~~~v~lvpmDGFh 124 (283)
T COG1072 82 PFIIGI-AGSVAVGKSTTARILQALLSR-WPESPKVDLVTMDGFH 124 (283)
T ss_pred CEEEEe-ccCccccHHHHHHHHHHHHhh-CCCCCceEEEeccccc
Confidence 466776 588999999999999999999 7665 8888888654
No 484
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=92.42 E-value=2.9 Score=34.23 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=65.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccCCCCCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCFICPHCSEP 213 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~~~~~~~~~ 213 (295)
..+.+.|+|+++...........+..+|.++++.+.+. .++..+...++.+.+. ....+.+|.|+.|....
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~----- 124 (211)
T cd04111 50 VRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQ----- 124 (211)
T ss_pred CEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccc-----
Confidence 34678899999644322333344557888888877654 4666666666655432 22345588899985321
Q ss_pred ccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCCChHHHHHHHHHHHHHHHHHHH
Q 022525 214 SFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDSTVSRAYGEVAVNVVNRLQEL 280 (295)
Q Consensus 214 ~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~s~~~~~~~~l~~~l~~~~~~~ 280 (295)
.........++.+.++.+++. -+... .....+.+..|++.+..++...
T Consensus 125 -~~v~~~~~~~~~~~~~~~~~e---------~Sak~---------g~~v~e~f~~l~~~~~~~~~~~ 172 (211)
T cd04111 125 -RQVTREEAEKLAKDLGMKYIE---------TSART---------GDNVEEAFELLTQEIYERIKRG 172 (211)
T ss_pred -cccCHHHHHHHHHHhCCEEEE---------EeCCC---------CCCHHHHHHHHHHHHHHHhhcC
Confidence 111123345555555533221 11111 2235566777777776665443
No 485
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.32 E-value=0.26 Score=42.23 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=33.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.++=| -+..|+||||+|.+++..... .|.++++||...
T Consensus 60 g~ItEi-yG~~gsGKT~lal~~~~~aq~-~g~~a~fIDtE~ 98 (279)
T COG0468 60 GRITEI-YGPESSGKTTLALQLVANAQK-PGGKAAFIDTEH 98 (279)
T ss_pred ceEEEE-ecCCCcchhhHHHHHHHHhhc-CCCeEEEEeCCC
Confidence 345555 588999999999999999999 999999999874
No 486
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=92.30 E-value=0.23 Score=45.80 Aligned_cols=67 Identities=18% Similarity=0.114 Sum_probs=56.4
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
...+.+||||+......+-......+|.+++|+..+..-...+...++.++..+.|++ +.+|+.+..
T Consensus 54 ~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~i-VAiNKiDk~ 120 (509)
T COG0532 54 IPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIV-VAINKIDKP 120 (509)
T ss_pred CceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEE-EEEecccCC
Confidence 3568999999876654555555667899999999999999999999999999999997 899999853
No 487
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.24 E-value=0.31 Score=38.63 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=33.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la-~~~g~~VlliD~D~~~ 73 (295)
+...+..+..|||||.++..||..+- . ...+.+.+|+-...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~-~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVG-SERPLIRIDMSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-S-SCCEEEEEEGGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccC-CccchHHHhhhccc
Confidence 44555568999999999999999999 7 67788999887655
No 488
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.19 E-value=0.27 Score=45.92 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=32.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.| .+..|+||||++.++++.-+...|.++++|.++..
T Consensus 21 g~~~Li-~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 21 GRSTLV-SGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES 61 (484)
T ss_pred CeEEEE-EcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 355555 58899999999999998866614999999998743
No 489
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=92.17 E-value=1.6 Score=35.19 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=34.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+..|.| ++.-|+|||++.-.+-..|.. . +++.+|--|...
T Consensus 13 ~~~i~v-~Gp~GSGKTaLie~~~~~L~~-~-~~~aVI~~Di~t 52 (202)
T COG0378 13 MLRIGV-GGPPGSGKTALIEKTLRALKD-E-YKIAVITGDIYT 52 (202)
T ss_pred eEEEEe-cCCCCcCHHHHHHHHHHHHHh-h-CCeEEEeceeec
Confidence 366776 478899999999999999998 5 999999888766
No 490
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=92.13 E-value=0.24 Score=47.79 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=31.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
-+.++.+..|+||||+.+.+...+.+ .|.+|++.-
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~-~g~~VLv~a 208 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVK-RGLRVLVTA 208 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEEc
Confidence 45667899999999999999999999 999999874
No 491
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.12 E-value=0.28 Score=38.82 Aligned_cols=31 Identities=32% Similarity=0.384 Sum_probs=24.6
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 36 i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
+..++.|+||||+...+...|.. .|.+|.-+
T Consensus 3 ~iTG~pG~GKTTll~k~i~~l~~-~~~~v~Gf 33 (168)
T PF03266_consen 3 FITGPPGVGKTTLLKKVIEELKK-KGLPVGGF 33 (168)
T ss_dssp EEES-TTSSHHHHHHHHHHHHHH-TCGGEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHhhc-cCCccceE
Confidence 34589999999999999999988 77776443
No 492
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.11 E-value=0.14 Score=39.99 Aligned_cols=30 Identities=37% Similarity=0.451 Sum_probs=22.4
Q ss_pred eeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 37 ~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
..+..|+||||++..|+..+. ..+||.|..
T Consensus 3 l~G~~GsGKSTla~~l~~~l~------~~~v~~D~~ 32 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRLG------AKFIEGDDL 32 (163)
T ss_pred EECCCCCCHHHHHHHHHHhcC------CeEEeCccc
Confidence 458899999999998886653 255777654
No 493
>PRK13947 shikimate kinase; Provisional
Probab=92.03 E-value=0.18 Score=39.76 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=22.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
|.+ .+-.|+||||++..||..| |.+ ++|.|.
T Consensus 4 I~l-~G~~GsGKst~a~~La~~l----g~~--~id~d~ 34 (171)
T PRK13947 4 IVL-IGFMGTGKTTVGKRVATTL----SFG--FIDTDK 34 (171)
T ss_pred EEE-EcCCCCCHHHHHHHHHHHh----CCC--EEECch
Confidence 444 3889999999999887655 444 477775
No 494
>PRK07773 replicative DNA helicase; Validated
Probab=92.02 E-value=0.25 Score=49.63 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=34.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
--+.+.++..|+|||+++.++|...|...|.+|+++.++-..
T Consensus 217 G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~ 258 (886)
T PRK07773 217 GQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSK 258 (886)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCH
Confidence 345566799999999999999999996358999999887654
No 495
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=92.00 E-value=1.2 Score=34.38 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=40.8
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+......+....+..+|.++++...+. .++......++.+.+ .+.|+ .+|.|+.+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-iiv~NK~Dl 119 (164)
T cd04145 49 WAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPM-ILVGNKADL 119 (164)
T ss_pred EEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCE-EEEeeCccc
Confidence 3567889999754433344445567888888877654 345555544444433 24455 489999984
No 496
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=92.00 E-value=0.36 Score=39.63 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=24.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
..+|+++ +.-|+||||++.- |+. .|..| +|+|
T Consensus 5 ~~~igit-G~igsGKSt~~~~----l~~-~g~~v--~d~D 36 (208)
T PRK14731 5 PFLVGVT-GGIGSGKSTVCRF----LAE-MGCEL--FEAD 36 (208)
T ss_pred CEEEEEE-CCCCCCHHHHHHH----HHH-CCCeE--Eecc
Confidence 4677775 8889999999874 456 67766 6888
No 497
>PLN02165 adenylate isopentenyltransferase
Probab=91.96 E-value=0.2 Score=44.02 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=26.9
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
...+++|+|+ +.-|+||||++..||..+.- -+|++|.-
T Consensus 40 ~~~g~iivIi-GPTGSGKStLA~~LA~~l~~------eIIsaDs~ 77 (334)
T PLN02165 40 NCKDKVVVIM-GATGSGKSRLSVDLATRFPS------EIINSDKM 77 (334)
T ss_pred CCCCCEEEEE-CCCCCcHHHHHHHHHHHcCC------ceecCChh
Confidence 3346677776 68899999999987766532 45777743
No 498
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=91.94 E-value=0.11 Score=40.64 Aligned_cols=26 Identities=38% Similarity=0.342 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 41 GGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 41 GGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
-|+||||++..||..|.. -++|+|..
T Consensus 1 ~GsGKStvg~~lA~~L~~------~fiD~D~~ 26 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGR------PFIDLDDE 26 (158)
T ss_dssp TTSSHHHHHHHHHHHHTS------EEEEHHHH
T ss_pred CCCcHHHHHHHHHHHhCC------CccccCHH
Confidence 399999999999988887 67899853
No 499
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=91.92 E-value=1 Score=35.50 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=42.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+......+....+..+|.++++...+. .++..+....+.+.+ .+.|+ .+|.|+.+.
T Consensus 48 ~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pi-ilvgNK~Dl 119 (172)
T cd04141 48 EPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPL-VLVGNKVDL 119 (172)
T ss_pred EEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCE-EEEEEChhh
Confidence 45678899998654432333344557888888866544 466666655444443 24455 599999984
No 500
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.82 E-value=0.38 Score=48.05 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=36.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC--CCCcccccccCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY--GPSVPMMMKIDQ 84 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~--~~~~~~~~g~~~ 84 (295)
.-+.++.+..|||||.+|..||..|-. .+..+..+|+... ..+...++|..+
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~-~~~~~~~~dmse~~~~~~~~~l~g~~~ 649 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYG-GEQNLITINMSEFQEAHTVSRLKGSPP 649 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhC-CCcceEEEeHHHhhhhhhhccccCCCC
Confidence 334455689999999999999999877 6678888886432 223445555543
Done!