Query 022525
Match_columns 295
No_of_seqs 130 out of 1611
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ea0_A ATPase, para family; al 100.0 7.3E-36 2.5E-40 251.3 13.8 226 29-275 2-244 (245)
2 1g3q_A MIND ATPase, cell divis 100.0 2.5E-35 8.4E-40 246.9 15.7 226 30-276 1-236 (237)
3 3q9l_A Septum site-determining 100.0 2.7E-35 9.1E-40 250.0 15.1 229 30-276 1-249 (260)
4 1hyq_A MIND, cell division inh 100.0 2.7E-35 9.2E-40 250.5 14.5 226 30-276 1-235 (263)
5 2ph1_A Nucleotide-binding prot 100.0 3.8E-34 1.3E-38 243.4 20.8 228 27-255 14-244 (262)
6 3end_A Light-independent proto 100.0 7.9E-34 2.7E-38 246.9 20.0 228 28-277 38-287 (307)
7 3fwy_A Light-independent proto 100.0 1.2E-33 4.1E-38 244.9 20.6 231 30-279 47-296 (314)
8 4dzz_A Plasmid partitioning pr 100.0 5.2E-34 1.8E-38 233.7 15.8 200 31-278 1-206 (206)
9 3kjh_A CO dehydrogenase/acetyl 100.0 8.6E-34 2.9E-38 239.5 15.7 221 33-277 2-253 (254)
10 1cp2_A CP2, nitrogenase iron p 100.0 1.1E-33 3.7E-38 241.4 14.5 234 31-278 1-249 (269)
11 1wcv_1 SOJ, segregation protei 100.0 1.5E-34 5E-39 245.2 8.8 236 30-283 5-252 (257)
12 2afh_E Nitrogenase iron protei 100.0 2.5E-33 8.4E-38 241.7 15.4 234 31-278 2-252 (289)
13 3pg5_A Uncharacterized protein 100.0 1.4E-32 4.9E-37 243.6 15.7 249 31-283 1-355 (361)
14 3k9g_A PF-32 protein; ssgcid, 100.0 4.9E-32 1.7E-36 231.0 16.2 228 29-277 25-267 (267)
15 2oze_A ORF delta'; para, walke 100.0 3.2E-32 1.1E-36 235.7 12.3 239 31-283 34-296 (298)
16 3cwq_A Para family chromosome 100.0 4.3E-32 1.5E-36 222.9 12.2 198 32-281 1-203 (209)
17 3ez2_A Plasmid partition prote 100.0 7.5E-32 2.6E-36 242.4 10.3 260 10-281 88-396 (398)
18 3ez9_A Para; DNA binding, wing 100.0 5.6E-31 1.9E-35 237.1 15.0 240 27-280 107-398 (403)
19 2xj4_A MIPZ; replication, cell 100.0 1.4E-31 4.9E-36 230.2 7.0 228 30-274 3-265 (286)
20 3la6_A Tyrosine-protein kinase 100.0 3.9E-30 1.3E-34 220.4 12.9 190 5-206 70-267 (286)
21 3bfv_A CAPA1, CAPB2, membrane 100.0 1.2E-29 4E-34 216.1 11.5 189 5-205 60-256 (271)
22 3cio_A ETK, tyrosine-protein k 100.0 9.4E-29 3.2E-33 213.5 11.6 190 5-206 82-279 (299)
23 3fkq_A NTRC-like two-domain pr 99.9 1.2E-26 4.1E-31 206.6 11.3 197 28-245 140-355 (373)
24 3ug7_A Arsenical pump-driving 99.9 5.7E-27 1.9E-31 206.6 8.3 231 5-242 3-317 (349)
25 3zq6_A Putative arsenical pump 99.9 2.1E-24 7.1E-29 188.5 11.5 209 31-242 13-302 (324)
26 2woo_A ATPase GET3; tail-ancho 99.9 1.9E-23 6.5E-28 182.7 7.8 221 10-240 2-300 (329)
27 2woj_A ATPase GET3; tail-ancho 99.9 5.4E-23 1.8E-27 181.3 9.3 171 31-204 17-275 (354)
28 1byi_A Dethiobiotin synthase; 99.9 3.6E-22 1.2E-26 165.3 13.4 195 32-242 2-208 (224)
29 3iqw_A Tail-anchored protein t 99.9 1.1E-22 3.8E-27 177.4 8.4 171 31-204 15-262 (334)
30 3io3_A DEHA2D07832P; chaperone 99.9 4E-22 1.4E-26 174.7 6.7 208 31-241 17-313 (348)
31 1ihu_A Arsenical pump-driving 99.8 1.4E-19 4.8E-24 170.3 8.3 210 30-242 325-570 (589)
32 3igf_A ALL4481 protein; two-do 99.8 1.5E-18 5.2E-23 153.0 11.8 168 32-202 2-252 (374)
33 1ihu_A Arsenical pump-driving 99.8 5E-19 1.7E-23 166.5 7.9 171 32-205 8-239 (589)
34 2xxa_A Signal recognition part 99.7 2.5E-16 8.6E-21 141.8 15.5 166 30-234 99-271 (433)
35 3of5_A Dethiobiotin synthetase 99.6 1.2E-15 4E-20 126.2 11.0 190 30-238 3-206 (228)
36 1j8m_F SRP54, signal recogniti 99.6 2.3E-15 7.7E-20 129.3 12.4 165 31-234 98-270 (297)
37 1zu4_A FTSY; GTPase, signal re 99.6 1.4E-14 4.9E-19 125.5 14.6 170 30-234 104-285 (320)
38 1ls1_A Signal recognition part 99.6 1.8E-14 6E-19 123.8 13.4 166 30-234 97-268 (295)
39 3fgn_A Dethiobiotin synthetase 99.6 5.8E-14 2E-18 117.3 13.9 191 30-243 25-227 (251)
40 2ffh_A Protein (FFH); SRP54, s 99.5 4.9E-14 1.7E-18 126.1 13.2 166 30-234 97-268 (425)
41 1yrb_A ATP(GTP)binding protein 99.5 1.1E-14 3.7E-19 123.0 7.9 46 29-76 11-56 (262)
42 3qxc_A Dethiobiotin synthetase 99.5 2.2E-14 7.4E-19 119.2 8.9 212 25-248 15-239 (242)
43 3dm5_A SRP54, signal recogniti 99.5 3.8E-13 1.3E-17 120.5 14.4 166 30-234 99-270 (443)
44 2v3c_C SRP54, signal recogniti 99.5 9E-13 3.1E-17 118.6 14.8 164 31-234 99-269 (432)
45 2j37_W Signal recognition part 99.4 6.5E-13 2.2E-17 121.3 12.2 167 29-234 99-271 (504)
46 3kl4_A SRP54, signal recogniti 99.4 6.1E-12 2.1E-16 112.7 15.0 215 30-291 96-323 (433)
47 1vma_A Cell division protein F 99.3 5.7E-11 1.9E-15 102.1 14.6 166 29-234 102-280 (306)
48 2px0_A Flagellar biosynthesis 99.3 6E-11 2.1E-15 101.7 13.4 161 30-234 104-270 (296)
49 2r8r_A Sensor protein; KDPD, P 99.1 1.6E-10 5.4E-15 94.1 8.9 44 31-75 5-48 (228)
50 3p32_A Probable GTPase RV1496/ 99.1 2.2E-10 7.7E-15 100.9 9.6 149 31-205 79-229 (355)
51 2p67_A LAO/AO transport system 98.9 3.3E-09 1.1E-13 92.9 9.1 150 31-205 56-206 (341)
52 4a0g_A Adenosylmethionine-8-am 98.6 9E-07 3.1E-11 85.9 16.5 92 139-242 201-299 (831)
53 3pzx_A Formate--tetrahydrofola 98.6 2.3E-08 7.9E-13 88.7 3.1 74 9-86 34-111 (557)
54 2yhs_A FTSY, cell division pro 98.5 8.5E-06 2.9E-10 73.8 18.0 164 31-234 293-469 (503)
55 2obn_A Hypothetical protein; s 98.5 1.9E-06 6.7E-11 74.5 13.1 167 31-240 152-338 (349)
56 3e70_C DPA, signal recognition 98.4 2.7E-06 9.1E-11 73.7 12.4 167 29-234 127-299 (328)
57 2rdo_7 EF-G, elongation factor 98.3 1.1E-05 3.6E-10 77.1 14.9 92 138-238 80-172 (704)
58 2h5e_A Peptide chain release f 98.2 7E-06 2.4E-10 75.7 10.8 89 138-235 80-168 (529)
59 1rj9_A FTSY, signal recognitio 98.1 0.00037 1.3E-08 59.6 17.8 42 30-73 101-142 (304)
60 2wsm_A Hydrogenase expression/ 97.9 4.2E-05 1.4E-09 62.0 9.2 40 31-73 30-69 (221)
61 2www_A Methylmalonic aciduria 97.9 0.00027 9.4E-09 61.7 14.8 43 31-75 74-116 (349)
62 2ce2_X GTPase HRAS; signaling 97.7 0.00052 1.8E-08 52.2 12.0 88 138-233 49-141 (166)
63 1g5t_A COB(I)alamin adenosyltr 97.7 0.00024 8.3E-09 56.3 10.0 38 31-71 29-66 (196)
64 4fn5_A EF-G 1, elongation fact 97.7 0.00034 1.2E-08 66.9 13.0 92 138-238 83-175 (709)
65 1xjc_A MOBB protein homolog; s 97.7 6.3E-05 2.1E-09 58.5 6.1 41 31-73 4-44 (169)
66 3iev_A GTP-binding protein ERA 97.7 0.00021 7E-09 61.3 9.9 66 139-205 58-134 (308)
67 2xex_A Elongation factor G; GT 97.7 0.00021 7.3E-09 68.0 10.9 92 138-238 73-165 (693)
68 3con_A GTPase NRAS; structural 97.7 0.00051 1.7E-08 53.9 11.4 87 138-232 67-158 (190)
69 2og2_A Putative signal recogni 97.6 0.0031 1.1E-07 55.0 16.4 42 30-73 156-197 (359)
70 3b9q_A Chloroplast SRP recepto 97.6 0.003 1E-07 53.8 16.0 42 30-73 99-140 (302)
71 1dar_A EF-G, elongation factor 97.6 0.00035 1.2E-08 66.6 10.9 92 138-238 75-167 (691)
72 2qm8_A GTPase/ATPase; G protei 97.6 0.00081 2.8E-08 58.4 11.9 41 31-73 55-95 (337)
73 3oes_A GTPase rhebl1; small GT 97.5 0.0035 1.2E-07 49.7 14.4 67 138-205 70-141 (201)
74 3j25_A Tetracycline resistance 97.5 0.00026 9E-09 66.8 8.6 88 138-234 65-152 (638)
75 1z2a_A RAS-related protein RAB 97.4 0.0011 3.8E-08 50.5 10.1 88 138-232 52-142 (168)
76 2c78_A Elongation factor TU-A; 97.4 0.00065 2.2E-08 60.5 9.7 68 138-205 73-140 (405)
77 3iby_A Ferrous iron transport 97.4 0.0007 2.4E-08 56.4 9.3 90 138-237 46-147 (256)
78 4dsu_A GTPase KRAS, isoform 2B 97.4 0.014 4.7E-07 45.3 16.4 87 139-233 51-142 (189)
79 1xp8_A RECA protein, recombina 97.4 0.00058 2E-08 59.9 8.7 40 31-72 74-113 (366)
80 3cph_A RAS-related protein SEC 97.4 0.0015 5.1E-08 52.1 10.6 66 139-205 68-137 (213)
81 3t1o_A Gliding protein MGLA; G 97.4 0.0041 1.4E-07 48.7 12.9 67 138-205 72-147 (198)
82 3vqt_A RF-3, peptide chain rel 97.4 0.00036 1.2E-08 64.6 7.5 92 138-238 98-190 (548)
83 3clv_A RAB5 protein, putative; 97.4 0.0027 9.2E-08 50.0 11.8 64 140-204 93-158 (208)
84 1g16_A RAS-related protein SEC 97.3 0.0023 7.9E-08 48.8 11.0 67 138-205 50-120 (170)
85 3tkl_A RAS-related protein RAB 97.3 0.007 2.4E-07 47.4 13.9 88 139-233 64-155 (196)
86 3t5g_A GTP-binding protein RHE 97.3 0.01 3.4E-07 45.9 14.2 116 138-282 52-172 (181)
87 2efe_B Small GTP-binding prote 97.3 0.005 1.7E-07 47.5 12.2 89 138-232 59-150 (181)
88 2a9k_A RAS-related protein RAL 97.3 0.0025 8.4E-08 49.5 10.4 67 138-205 64-135 (187)
89 1d2e_A Elongation factor TU (E 97.2 0.00084 2.9E-08 59.6 8.4 68 138-205 64-131 (397)
90 1u8z_A RAS-related protein RAL 97.2 0.0023 7.9E-08 48.6 9.9 67 138-205 50-121 (168)
91 4bas_A ADP-ribosylation factor 97.2 0.0038 1.3E-07 49.1 11.4 67 138-205 61-139 (199)
92 2lkc_A Translation initiation 97.2 0.0014 4.7E-08 50.6 8.3 67 138-205 53-119 (178)
93 2g0t_A Conserved hypothetical 97.2 0.0059 2E-07 52.9 12.6 137 30-202 168-323 (350)
94 2bcg_Y Protein YP2, GTP-bindin 97.2 0.0057 1.9E-07 48.5 11.9 68 138-206 55-126 (206)
95 2hf9_A Probable hydrogenase ni 97.2 0.0019 6.5E-08 52.2 9.0 39 31-72 38-76 (226)
96 2erx_A GTP-binding protein DI- 97.2 0.003 1E-07 48.2 9.8 67 138-205 49-121 (172)
97 1wf3_A GTP-binding protein; GT 97.1 0.00095 3.2E-08 57.0 7.4 67 138-205 53-129 (301)
98 2p5s_A RAS and EF-hand domain 97.1 0.00097 3.3E-08 52.9 6.8 67 138-205 75-145 (199)
99 2a5j_A RAS-related protein RAB 97.1 0.0043 1.5E-07 48.6 10.5 66 139-205 69-138 (191)
100 1kao_A RAP2A; GTP-binding prot 97.1 0.0074 2.5E-07 45.6 11.5 67 138-205 49-120 (167)
101 2gf0_A GTP-binding protein DI- 97.1 0.0032 1.1E-07 49.5 9.7 67 138-205 54-126 (199)
102 1z08_A RAS-related protein RAB 97.1 0.0055 1.9E-07 46.7 10.7 89 138-233 53-145 (170)
103 3cpj_B GTP-binding protein YPT 97.1 0.0071 2.4E-07 48.8 11.9 66 139-205 61-130 (223)
104 1jny_A EF-1-alpha, elongation 97.1 0.0021 7.3E-08 57.7 9.4 69 138-206 82-157 (435)
105 1x3s_A RAS-related protein RAB 97.1 0.0044 1.5E-07 48.5 10.0 68 138-205 62-133 (195)
106 1z0f_A RAB14, member RAS oncog 97.1 0.0062 2.1E-07 46.8 10.8 67 138-205 62-132 (179)
107 2bov_A RAla, RAS-related prote 97.0 0.0059 2E-07 48.3 10.8 67 138-205 60-131 (206)
108 2dy1_A Elongation factor G; tr 97.0 0.002 6.8E-08 61.1 9.1 90 138-238 72-162 (665)
109 2b8t_A Thymidine kinase; deoxy 97.0 0.0031 1.1E-07 51.2 8.8 36 31-68 12-47 (223)
110 1u94_A RECA protein, recombina 97.0 0.00091 3.1E-08 58.4 5.9 40 31-72 63-102 (356)
111 2yvu_A Probable adenylyl-sulfa 97.0 0.0012 4.2E-08 51.8 6.1 39 31-71 13-51 (186)
112 3i8s_A Ferrous iron transport 97.0 0.005 1.7E-07 51.7 10.2 88 138-235 48-147 (274)
113 3kkq_A RAS-related protein M-R 97.0 0.013 4.4E-07 45.3 12.1 90 138-234 64-158 (183)
114 3sjy_A Translation initiation 97.0 0.00079 2.7E-08 59.9 5.5 67 139-205 74-141 (403)
115 1s1m_A CTP synthase; CTP synth 97.0 0.0016 5.4E-08 59.7 7.4 168 31-202 3-212 (545)
116 1c1y_A RAS-related protein RAP 96.9 0.0071 2.4E-07 45.8 10.1 67 138-205 49-120 (167)
117 3dz8_A RAS-related protein RAB 96.9 0.0014 4.8E-08 51.5 6.2 88 138-232 70-161 (191)
118 3k53_A Ferrous iron transport 96.9 0.0061 2.1E-07 51.0 10.4 88 138-235 48-144 (271)
119 1vco_A CTP synthetase; tetrame 96.9 0.021 7.3E-07 52.4 14.3 41 30-71 11-52 (550)
120 1m2o_B GTP-binding protein SAR 96.9 0.013 4.3E-07 46.0 11.4 67 138-205 65-136 (190)
121 1zo1_I IF2, translation initia 96.9 0.0026 8.8E-08 58.1 8.1 67 139-206 50-116 (501)
122 2atv_A RERG, RAS-like estrogen 96.9 0.01 3.5E-07 46.6 10.8 66 138-205 74-144 (196)
123 2hup_A RAS-related protein RAB 96.9 0.0087 3E-07 47.4 10.4 66 139-205 77-146 (201)
124 2ged_A SR-beta, signal recogni 96.9 0.0097 3.3E-07 46.5 10.6 66 139-205 90-168 (193)
125 1wms_A RAB-9, RAB9, RAS-relate 96.9 0.014 4.8E-07 44.7 11.4 66 139-205 55-128 (177)
126 4dcu_A GTP-binding protein ENG 96.9 0.0014 4.7E-08 59.4 6.2 66 138-205 69-143 (456)
127 1g7s_A Translation initiation 96.9 0.0049 1.7E-07 57.5 9.9 67 139-206 69-135 (594)
128 3q72_A GTP-binding protein RAD 96.8 0.012 4E-07 44.6 10.6 67 138-205 47-118 (166)
129 2dyk_A GTP-binding protein; GT 96.8 0.0025 8.4E-08 48.2 6.6 66 139-205 48-120 (161)
130 1z0j_A RAB-22, RAS-related pro 96.8 0.015 5E-07 44.2 11.1 68 138-205 53-123 (170)
131 1r2q_A RAS-related protein RAB 96.8 0.0055 1.9E-07 46.6 8.4 68 138-205 53-123 (170)
132 1moz_A ARL1, ADP-ribosylation 96.8 0.047 1.6E-06 41.9 13.9 68 138-205 60-131 (183)
133 2ywe_A GTP-binding protein LEP 96.8 0.0048 1.6E-07 57.5 9.3 67 138-205 71-137 (600)
134 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0015 5.1E-08 54.4 5.4 39 31-71 4-42 (260)
135 4dhe_A Probable GTP-binding pr 96.8 0.0036 1.2E-07 50.3 7.4 66 138-205 77-156 (223)
136 3q85_A GTP-binding protein REM 96.8 0.0046 1.6E-07 47.2 7.6 89 138-233 49-143 (169)
137 1np6_A Molybdopterin-guanine d 96.8 0.0031 1E-07 49.2 6.5 41 31-73 6-46 (174)
138 4dkx_A RAS-related protein RAB 96.7 0.023 8E-07 45.7 12.0 90 138-234 60-153 (216)
139 1vg8_A RAS-related protein RAB 96.7 0.014 4.9E-07 46.0 10.6 68 138-206 55-130 (207)
140 1ega_A Protein (GTP-binding pr 96.7 0.0044 1.5E-07 52.8 7.8 66 138-205 54-128 (301)
141 1xx6_A Thymidine kinase; NESG, 96.7 0.0019 6.3E-08 51.2 5.1 36 31-68 8-43 (191)
142 1upt_A ARL1, ADP-ribosylation 96.7 0.021 7.1E-07 43.4 11.0 66 139-205 50-120 (171)
143 1ky3_A GTP-binding protein YPT 96.7 0.029 9.9E-07 43.0 11.8 67 138-205 56-130 (182)
144 3izy_P Translation initiation 96.7 0.003 1E-07 58.1 6.9 67 139-206 51-117 (537)
145 2h17_A ADP-ribosylation factor 96.6 0.023 7.9E-07 43.9 11.1 67 138-205 63-134 (181)
146 1r8s_A ADP-ribosylation factor 96.6 0.033 1.1E-06 42.0 11.7 67 138-205 42-113 (164)
147 2il1_A RAB12; G-protein, GDP, 96.6 0.0049 1.7E-07 48.4 7.1 67 138-205 73-143 (192)
148 2bme_A RAB4A, RAS-related prot 96.6 0.012 4E-07 45.6 9.1 66 139-205 58-127 (186)
149 2fv8_A H6, RHO-related GTP-bin 96.6 0.011 3.9E-07 46.9 9.2 66 139-205 72-141 (207)
150 2o52_A RAS-related protein RAB 96.6 0.013 4.4E-07 46.3 9.4 66 139-205 73-142 (200)
151 3tr5_A RF-3, peptide chain rel 96.6 0.008 2.7E-07 55.3 9.1 92 138-238 80-172 (528)
152 3q3j_B RHO-related GTP-binding 96.6 0.018 6.3E-07 46.0 10.3 67 138-205 73-143 (214)
153 2ew1_A RAS-related protein RAB 96.6 0.016 5.4E-07 46.0 9.7 66 139-205 74-143 (201)
154 3io5_A Recombination and repai 96.5 0.011 3.7E-07 50.5 8.5 38 34-72 30-69 (333)
155 2gco_A H9, RHO-related GTP-bin 96.5 0.018 6.1E-07 45.5 9.6 67 138-205 71-141 (201)
156 3pqc_A Probable GTP-binding pr 96.4 0.01 3.5E-07 46.2 7.7 42 163-205 104-145 (195)
157 1rz3_A Hypothetical protein rb 96.4 0.0058 2E-07 48.6 6.0 41 31-73 22-62 (201)
158 3bh0_A DNAB-like replicative h 96.4 0.0046 1.6E-07 53.0 5.7 38 34-72 70-107 (315)
159 2dr3_A UPF0273 protein PH0284; 96.3 0.0049 1.7E-07 50.3 5.5 40 31-72 23-62 (247)
160 2j9r_A Thymidine kinase; TK1, 96.3 0.0032 1.1E-07 50.6 4.2 36 31-68 28-63 (214)
161 1zd9_A ADP-ribosylation factor 96.3 0.038 1.3E-06 43.0 10.4 67 138-205 65-136 (188)
162 3lxw_A GTPase IMAP family memb 96.2 0.014 4.9E-07 48.0 7.8 67 138-205 68-151 (247)
163 3hr8_A Protein RECA; alpha and 96.2 0.0091 3.1E-07 52.0 6.8 40 31-72 61-100 (356)
164 1nks_A Adenylate kinase; therm 96.2 0.0056 1.9E-07 47.9 4.9 37 32-70 2-38 (194)
165 3dpu_A RAB family protein; roc 96.2 0.019 6.4E-07 53.0 9.2 88 138-234 96-185 (535)
166 2zr9_A Protein RECA, recombina 96.2 0.0061 2.1E-07 53.0 5.5 39 31-71 61-99 (349)
167 1mky_A Probable GTP-binding pr 96.2 0.014 4.9E-07 52.4 8.1 66 138-204 47-121 (439)
168 2f1r_A Molybdopterin-guanine d 96.2 0.0051 1.7E-07 47.8 4.4 41 30-72 1-41 (171)
169 4a1f_A DNAB helicase, replicat 96.1 0.0068 2.3E-07 52.4 5.6 38 34-72 48-85 (338)
170 1a7j_A Phosphoribulokinase; tr 96.1 0.0029 1E-07 53.6 3.2 41 31-73 5-45 (290)
171 1nrj_B SR-beta, signal recogni 96.1 0.011 3.8E-07 47.3 6.5 67 139-206 54-133 (218)
172 2hjg_A GTP-binding protein ENG 96.1 0.0081 2.8E-07 53.9 6.2 67 138-205 49-123 (436)
173 3bgw_A DNAB-like replicative h 96.1 0.006 2.1E-07 54.9 5.3 40 33-73 198-237 (444)
174 2cvh_A DNA repair and recombin 96.0 0.0079 2.7E-07 48.2 5.3 37 31-72 20-56 (220)
175 3mca_A HBS1, elongation factor 96.0 0.0034 1.1E-07 58.7 3.4 68 138-205 253-327 (592)
176 4gzl_A RAS-related C3 botulinu 96.0 0.02 6.9E-07 45.3 7.6 67 138-205 76-146 (204)
177 1uj2_A Uridine-cytidine kinase 96.0 0.0056 1.9E-07 50.6 4.4 42 31-73 22-67 (252)
178 3lvq_E ARF-GAP with SH3 domain 96.0 0.11 3.8E-06 47.2 13.4 67 138-205 364-435 (497)
179 3avx_A Elongation factor TS, e 96.0 0.012 4.1E-07 58.6 7.1 68 138-205 357-424 (1289)
180 1svi_A GTP-binding protein YSX 95.9 0.0096 3.3E-07 46.6 5.3 40 165-205 107-146 (195)
181 1wb1_A Translation elongation 95.9 0.0076 2.6E-07 54.9 5.1 67 138-205 71-137 (482)
182 3uie_A Adenylyl-sulfate kinase 95.8 0.015 5E-07 46.1 5.9 40 30-71 24-63 (200)
183 2qu8_A Putative nucleolar GTP- 95.8 0.11 3.7E-06 41.8 11.1 68 138-206 74-155 (228)
184 2pez_A Bifunctional 3'-phospho 95.8 0.015 5.3E-07 45.0 5.7 40 31-72 5-44 (179)
185 2zts_A Putative uncharacterize 95.8 0.012 4E-07 48.1 5.3 39 34-72 32-70 (251)
186 2g3y_A GTP-binding protein GEM 95.8 0.074 2.5E-06 42.5 9.9 66 139-205 86-157 (211)
187 3j2k_7 ERF3, eukaryotic polype 95.7 0.014 4.8E-07 52.4 6.1 68 138-205 93-167 (439)
188 4dcu_A GTP-binding protein ENG 95.7 0.015 5.1E-07 52.5 6.3 68 138-206 241-319 (456)
189 2w58_A DNAI, primosome compone 95.6 0.013 4.5E-07 46.4 5.0 37 32-70 55-91 (202)
190 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.014 4.9E-07 46.9 5.3 40 31-72 23-62 (235)
191 2j69_A Bacterial dynamin-like 95.6 0.037 1.3E-06 52.7 8.5 64 140-205 174-242 (695)
192 3ec2_A DNA replication protein 95.6 0.01 3.4E-07 46.2 3.9 37 31-69 38-75 (180)
193 3lxx_A GTPase IMAP family memb 95.5 0.056 1.9E-06 43.9 8.6 21 32-53 30-50 (239)
194 2aka_B Dynamin-1; fusion prote 95.5 0.063 2.1E-06 45.1 9.1 67 139-206 124-205 (299)
195 2q6t_A DNAB replication FORK h 95.4 0.019 6.4E-07 51.7 5.6 39 34-72 202-240 (444)
196 2xtp_A GTPase IMAP family memb 95.4 0.023 7.7E-07 47.0 5.7 66 138-205 69-151 (260)
197 1m7g_A Adenylylsulfate kinase; 95.4 0.018 6E-07 46.1 4.8 39 31-71 25-64 (211)
198 3trf_A Shikimate kinase, SK; a 95.3 0.0082 2.8E-07 46.8 2.7 34 31-71 5-38 (185)
199 2cjw_A GTP-binding protein GEM 95.3 0.22 7.5E-06 38.8 11.1 66 139-205 55-126 (192)
200 2r6a_A DNAB helicase, replicat 95.3 0.024 8.1E-07 51.2 5.9 41 31-72 203-243 (454)
201 2fh5_B SR-beta, signal recogni 95.2 0.024 8.1E-07 45.1 5.2 67 139-206 53-128 (214)
202 2gf9_A RAS-related protein RAB 95.2 0.058 2E-06 41.8 7.3 88 138-232 69-160 (189)
203 1q57_A DNA primase/helicase; d 95.1 0.013 4.5E-07 53.5 3.8 40 31-72 242-282 (503)
204 3ihw_A Centg3; RAS, centaurin, 95.1 0.1 3.5E-06 40.4 8.6 62 138-205 65-131 (184)
205 3bos_A Putative DNA replicatio 95.1 0.029 1E-06 45.2 5.5 39 31-71 52-90 (242)
206 2elf_A Protein translation elo 95.1 0.055 1.9E-06 47.4 7.4 67 138-205 58-125 (370)
207 2hxs_A RAB-26, RAS-related pro 95.0 0.091 3.1E-06 40.0 7.9 67 139-205 55-127 (178)
208 2gks_A Bifunctional SAT/APS ki 95.0 0.025 8.6E-07 52.2 5.3 39 31-71 372-410 (546)
209 3t61_A Gluconokinase; PSI-biol 95.0 0.015 5E-07 46.1 3.3 38 27-71 14-51 (202)
210 1kht_A Adenylate kinase; phosp 94.9 0.02 6.9E-07 44.6 3.9 37 32-70 4-40 (192)
211 2orw_A Thymidine kinase; TMTK, 94.8 0.04 1.4E-06 43.1 5.3 37 31-69 3-39 (184)
212 2z43_A DNA repair and recombin 94.8 0.023 7.8E-07 48.8 4.1 40 31-72 107-152 (324)
213 1cr0_A DNA primase/helicase; R 94.7 0.04 1.4E-06 46.5 5.5 40 31-71 35-74 (296)
214 3c8u_A Fructokinase; YP_612366 94.7 0.056 1.9E-06 43.0 6.1 40 31-72 22-61 (208)
215 1f60_A Elongation factor EEF1A 94.7 0.057 2E-06 48.7 6.7 68 138-205 83-157 (458)
216 2kjq_A DNAA-related protein; s 94.7 0.032 1.1E-06 42.1 4.3 38 31-70 36-73 (149)
217 1qhx_A CPT, protein (chloramph 94.7 0.017 5.8E-07 44.6 2.8 35 31-70 3-37 (178)
218 3bc1_A RAS-related protein RAB 94.7 0.079 2.7E-06 40.9 6.7 66 139-205 69-139 (195)
219 2fu5_C RAS-related protein RAB 94.6 0.089 3E-06 40.4 6.8 87 139-232 56-146 (183)
220 1e6c_A Shikimate kinase; phosp 94.6 0.022 7.7E-07 43.6 3.2 33 31-70 2-34 (173)
221 1zun_B Sulfate adenylate trans 94.5 0.058 2E-06 48.3 6.3 68 138-205 102-169 (434)
222 2g6b_A RAS-related protein RAB 94.5 0.13 4.6E-06 39.1 7.6 67 139-206 59-129 (180)
223 3l0i_B RAS-related protein RAB 94.4 0.089 3.1E-06 41.2 6.6 86 139-231 81-170 (199)
224 2qgz_A Helicase loader, putati 94.4 0.049 1.7E-06 46.4 5.3 37 32-70 153-190 (308)
225 1sq5_A Pantothenate kinase; P- 94.4 0.052 1.8E-06 46.2 5.4 41 31-73 80-122 (308)
226 2fg5_A RAB-22B, RAS-related pr 94.3 0.12 3.9E-06 40.3 6.9 67 138-205 70-140 (192)
227 3def_A T7I23.11 protein; chlor 94.3 0.15 5E-06 42.2 7.8 68 138-205 82-163 (262)
228 3tqc_A Pantothenate kinase; bi 94.3 0.065 2.2E-06 45.9 5.7 42 31-73 92-134 (321)
229 2nzj_A GTP-binding protein REM 94.2 0.21 7.2E-06 37.7 8.2 67 139-206 51-124 (175)
230 2f7s_A C25KG, RAS-related prot 94.2 0.1 3.6E-06 41.3 6.7 88 139-232 83-174 (217)
231 1x6v_B Bifunctional 3'-phospho 94.1 0.062 2.1E-06 50.3 5.7 40 30-71 51-90 (630)
232 3do6_A Formate--tetrahydrofola 94.1 0.023 7.8E-07 50.6 2.5 52 30-85 42-96 (543)
233 1zbd_A Rabphilin-3A; G protein 94.1 0.17 5.8E-06 39.6 7.5 88 138-232 55-146 (203)
234 2e87_A Hypothetical protein PH 94.0 0.65 2.2E-05 40.2 11.8 66 139-205 213-292 (357)
235 3t5d_A Septin-7; GTP-binding p 94.0 0.45 1.6E-05 39.4 10.5 40 164-205 116-156 (274)
236 1via_A Shikimate kinase; struc 94.0 0.031 1.1E-06 43.1 3.0 34 31-71 4-37 (175)
237 2pbr_A DTMP kinase, thymidylat 94.0 0.09 3.1E-06 40.9 5.8 34 33-68 2-35 (195)
238 2hjg_A GTP-binding protein ENG 94.0 0.079 2.7E-06 47.4 6.0 67 139-206 222-299 (436)
239 1h65_A Chloroplast outer envel 94.0 0.036 1.2E-06 46.2 3.5 68 138-205 85-166 (270)
240 1r5b_A Eukaryotic peptide chai 94.0 0.046 1.6E-06 49.4 4.4 68 138-205 119-193 (467)
241 2z0h_A DTMP kinase, thymidylat 93.9 0.098 3.3E-06 40.8 5.8 34 33-68 2-35 (197)
242 2iyv_A Shikimate kinase, SK; t 93.9 0.025 8.5E-07 43.9 2.2 33 32-71 3-35 (184)
243 3e2i_A Thymidine kinase; Zn-bi 93.9 0.063 2.1E-06 43.1 4.5 36 31-68 28-63 (219)
244 3a1s_A Iron(II) transport prot 93.9 0.17 5.9E-06 41.7 7.5 90 138-237 50-147 (258)
245 1odf_A YGR205W, hypothetical 3 93.9 0.05 1.7E-06 45.9 4.2 40 31-72 31-73 (290)
246 2axn_A 6-phosphofructo-2-kinas 93.8 0.078 2.7E-06 48.6 5.6 40 31-71 34-73 (520)
247 1m8p_A Sulfate adenylyltransfe 93.8 0.073 2.5E-06 49.4 5.5 39 31-71 396-435 (573)
248 1nlf_A Regulatory protein REPA 93.8 0.078 2.7E-06 44.3 5.2 39 31-71 30-78 (279)
249 2wwf_A Thymidilate kinase, put 93.7 0.1 3.5E-06 41.3 5.7 36 31-68 10-45 (212)
250 1nn5_A Similar to deoxythymidy 93.6 0.092 3.1E-06 41.6 5.2 35 31-67 9-43 (215)
251 1qf9_A UMP/CMP kinase, protein 93.6 0.051 1.7E-06 42.2 3.6 34 30-70 5-38 (194)
252 4edh_A DTMP kinase, thymidylat 93.6 0.12 4E-06 41.5 5.7 36 31-68 6-41 (213)
253 2ze6_A Isopentenyl transferase 93.6 0.053 1.8E-06 44.7 3.8 33 32-71 2-34 (253)
254 1kag_A SKI, shikimate kinase I 93.5 0.038 1.3E-06 42.3 2.7 33 31-70 4-36 (173)
255 2plr_A DTMP kinase, probable t 93.5 0.097 3.3E-06 41.3 5.2 34 31-67 4-37 (213)
256 3cb4_D GTP-binding protein LEP 93.5 0.081 2.8E-06 49.3 5.3 67 138-205 69-135 (599)
257 3p26_A Elongation factor 1 alp 93.5 0.12 4.2E-06 46.8 6.4 68 138-205 109-183 (483)
258 3crm_A TRNA delta(2)-isopenten 93.5 0.059 2E-06 46.1 4.0 36 30-72 4-39 (323)
259 1knq_A Gluconate kinase; ALFA/ 93.5 0.091 3.1E-06 40.3 4.8 34 31-71 8-41 (175)
260 3vaa_A Shikimate kinase, SK; s 93.3 0.051 1.8E-06 42.9 3.2 34 31-71 25-58 (199)
261 2y8e_A RAB-protein 6, GH09086P 93.3 0.17 6E-06 38.3 6.2 66 139-205 62-131 (179)
262 2yc2_C IFT27, small RAB-relate 93.3 0.15 5.2E-06 39.9 5.9 87 139-231 72-165 (208)
263 1l8q_A Chromosomal replication 93.2 0.092 3.2E-06 44.8 4.9 37 32-70 38-74 (324)
264 1jbk_A CLPB protein; beta barr 93.2 0.12 4E-06 39.8 5.1 26 32-58 44-69 (195)
265 2zej_A Dardarin, leucine-rich 93.2 0.18 6.2E-06 38.9 6.2 67 138-205 54-124 (184)
266 1v5w_A DMC1, meiotic recombina 93.2 0.083 2.8E-06 45.7 4.5 41 31-72 122-167 (343)
267 2fn4_A P23, RAS-related protei 93.2 0.41 1.4E-05 36.2 8.2 66 139-205 56-126 (181)
268 2ehv_A Hypothetical protein PH 93.1 0.14 4.6E-06 41.6 5.5 39 31-71 30-69 (251)
269 1ek0_A Protein (GTP-binding pr 93.0 0.49 1.7E-05 35.3 8.4 68 138-206 50-121 (170)
270 1zuh_A Shikimate kinase; alpha 93.0 0.058 2E-06 41.2 3.0 34 31-71 7-40 (168)
271 1ukz_A Uridylate kinase; trans 93.0 0.067 2.3E-06 42.2 3.5 35 29-70 13-47 (203)
272 3zvr_A Dynamin-1; hydrolase, D 93.0 0.37 1.3E-05 46.1 9.0 68 138-206 148-230 (772)
273 2i1q_A DNA repair and recombin 92.9 0.066 2.3E-06 45.8 3.5 40 31-72 98-153 (322)
274 1n0w_A DNA repair protein RAD5 92.8 0.11 3.6E-06 42.1 4.5 40 31-71 24-68 (243)
275 3kb2_A SPBC2 prophage-derived 92.8 0.092 3.2E-06 39.9 3.9 33 32-71 2-34 (173)
276 3tw8_B RAS-related protein RAB 92.7 0.4 1.4E-05 36.3 7.6 88 139-232 57-146 (181)
277 1gvn_B Zeta; postsegregational 92.7 0.061 2.1E-06 45.3 3.0 36 32-71 33-68 (287)
278 1zj6_A ADP-ribosylation factor 92.6 0.45 1.5E-05 36.5 7.7 68 138-205 58-129 (187)
279 3lw7_A Adenylate kinase relate 92.6 0.077 2.6E-06 40.3 3.2 27 33-65 3-29 (179)
280 2p65_A Hypothetical protein PF 92.6 0.11 3.7E-06 39.8 4.1 26 32-58 44-69 (187)
281 3cmw_A Protein RECA, recombina 92.5 0.12 4.2E-06 53.6 5.4 41 31-73 383-423 (1706)
282 3izq_1 HBS1P, elongation facto 92.5 0.18 6.1E-06 47.2 6.1 68 138-205 243-317 (611)
283 1tev_A UMP-CMP kinase; ploop, 92.5 0.086 3E-06 41.0 3.4 33 31-70 3-35 (196)
284 2qtf_A Protein HFLX, GTP-bindi 92.5 0.28 9.6E-06 42.7 7.0 65 140-205 226-304 (364)
285 2f6r_A COA synthase, bifunctio 92.5 0.12 4.1E-06 43.3 4.5 35 29-71 73-107 (281)
286 1g8f_A Sulfate adenylyltransfe 92.5 0.099 3.4E-06 47.7 4.1 40 31-71 395-435 (511)
287 3cmw_A Protein RECA, recombina 92.4 0.13 4.4E-06 53.4 5.4 41 31-73 732-772 (1706)
288 1z06_A RAS-related protein RAB 92.4 0.3 1E-05 37.7 6.5 66 139-205 68-139 (189)
289 3c5c_A RAS-like protein 12; GD 92.4 0.45 1.5E-05 36.7 7.5 66 138-205 67-139 (187)
290 3e1s_A Exodeoxyribonuclease V, 92.4 0.16 5.6E-06 47.1 5.6 33 34-67 206-238 (574)
291 2c95_A Adenylate kinase 1; tra 92.4 0.088 3E-06 41.1 3.3 33 31-70 9-41 (196)
292 2atx_A Small GTP binding prote 92.4 0.53 1.8E-05 36.3 7.9 67 138-205 64-134 (194)
293 3b1v_A Ferrous iron uptake tra 92.3 0.41 1.4E-05 39.8 7.5 89 139-237 48-144 (272)
294 2bwj_A Adenylate kinase 5; pho 92.3 0.076 2.6E-06 41.5 2.8 33 31-70 12-44 (199)
295 3d3q_A TRNA delta(2)-isopenten 92.3 0.1 3.6E-06 44.9 3.9 34 32-72 8-41 (340)
296 2a5y_B CED-4; apoptosis; HET: 92.3 0.1 3.5E-06 48.2 4.1 23 31-54 152-174 (549)
297 3n70_A Transport activator; si 92.2 0.078 2.7E-06 39.5 2.7 32 38-71 30-61 (145)
298 3lv8_A DTMP kinase, thymidylat 92.2 0.21 7.2E-06 40.7 5.4 35 31-67 27-62 (236)
299 1kk1_A EIF2gamma; initiation o 92.2 0.091 3.1E-06 46.6 3.5 66 140-205 83-149 (410)
300 1n0u_A EF-2, elongation factor 92.1 0.16 5.6E-06 49.4 5.4 67 138-205 96-162 (842)
301 4hlc_A DTMP kinase, thymidylat 92.1 0.23 7.8E-06 39.5 5.5 35 30-67 1-35 (205)
302 2qby_B CDC6 homolog 3, cell di 92.1 0.14 4.8E-06 44.5 4.6 39 31-71 45-91 (384)
303 4tmk_A Protein (thymidylate ki 92.0 0.24 8.1E-06 39.7 5.5 35 31-67 3-38 (213)
304 3llu_A RAS-related GTP-binding 92.0 0.38 1.3E-05 37.4 6.7 67 138-205 67-141 (196)
305 3asz_A Uridine kinase; cytidin 92.0 0.17 5.8E-06 40.0 4.6 38 31-73 6-43 (211)
306 4djt_A GTP-binding nuclear pro 91.9 0.31 1E-05 38.6 6.2 65 140-205 61-129 (218)
307 1ly1_A Polynucleotide kinase; 91.9 0.13 4.6E-06 39.3 3.8 33 32-70 3-35 (181)
308 4b3f_X DNA-binding protein smu 91.9 0.2 6.7E-06 47.3 5.6 36 32-68 205-240 (646)
309 4fcw_A Chaperone protein CLPB; 91.8 0.21 7.1E-06 42.1 5.3 39 33-73 49-87 (311)
310 2jeo_A Uridine-cytidine kinase 91.8 0.21 7E-06 40.8 5.1 40 31-71 25-68 (245)
311 2oil_A CATX-8, RAS-related pro 91.8 0.72 2.5E-05 35.5 8.1 68 138-205 72-142 (193)
312 2h57_A ADP-ribosylation factor 91.8 0.63 2.2E-05 35.8 7.7 67 138-205 65-138 (190)
313 2grj_A Dephospho-COA kinase; T 91.7 0.13 4.4E-06 40.5 3.5 34 32-72 13-46 (192)
314 1gtv_A TMK, thymidylate kinase 91.7 0.062 2.1E-06 42.6 1.7 34 33-68 2-35 (214)
315 2rhm_A Putative kinase; P-loop 91.6 0.17 5.8E-06 39.3 4.2 25 31-56 5-29 (193)
316 1s0u_A EIF-2-gamma, translatio 91.6 0.13 4.4E-06 45.6 3.8 67 140-206 81-148 (408)
317 2if2_A Dephospho-COA kinase; a 91.6 0.092 3.1E-06 41.4 2.6 32 32-71 2-33 (204)
318 3qq5_A Small GTP-binding prote 91.6 0.28 9.4E-06 43.7 5.9 63 141-206 84-153 (423)
319 3aez_A Pantothenate kinase; tr 91.6 0.29 9.9E-06 41.7 5.8 42 30-72 89-131 (312)
320 4eun_A Thermoresistant glucoki 91.5 0.17 5.7E-06 39.9 4.0 34 31-71 29-62 (200)
321 3hjn_A DTMP kinase, thymidylat 91.3 0.32 1.1E-05 38.3 5.5 30 38-68 6-35 (197)
322 3cmu_A Protein RECA, recombina 91.3 0.19 6.4E-06 53.1 5.1 41 31-73 383-423 (2050)
323 2chg_A Replication factor C sm 91.3 0.11 3.9E-06 40.9 2.9 34 36-70 42-75 (226)
324 2b6h_A ADP-ribosylation factor 91.2 0.54 1.9E-05 36.4 6.8 67 138-205 71-142 (192)
325 2v54_A DTMP kinase, thymidylat 91.0 0.2 6.8E-06 39.3 4.0 34 31-68 4-37 (204)
326 3upu_A ATP-dependent DNA helic 91.0 0.3 1E-05 43.9 5.6 33 34-67 47-80 (459)
327 1pzn_A RAD51, DNA repair and r 91.0 0.23 7.8E-06 43.0 4.7 40 31-71 131-175 (349)
328 2x77_A ADP-ribosylation factor 90.9 0.44 1.5E-05 36.6 6.0 67 138-205 64-135 (189)
329 2qby_A CDC6 homolog 1, cell di 90.9 0.2 6.9E-06 43.3 4.3 39 31-71 45-86 (386)
330 3exa_A TRNA delta(2)-isopenten 90.8 0.16 5.4E-06 43.2 3.4 34 32-72 4-37 (322)
331 2v1u_A Cell division control p 90.8 0.19 6.6E-06 43.5 4.1 39 31-71 44-88 (387)
332 3cmu_A Protein RECA, recombina 90.7 0.23 7.9E-06 52.4 5.1 40 31-72 1427-1466(2050)
333 2p5t_B PEZT; postsegregational 90.7 0.12 4.2E-06 42.4 2.6 37 31-72 32-68 (253)
334 3a8t_A Adenylate isopentenyltr 90.7 0.13 4.4E-06 44.2 2.8 35 32-73 41-75 (339)
335 2z4s_A Chromosomal replication 90.7 0.22 7.7E-06 44.5 4.5 37 32-70 131-169 (440)
336 2cdn_A Adenylate kinase; phosp 90.5 0.28 9.6E-06 38.4 4.5 33 31-70 20-52 (201)
337 1w5s_A Origin recognition comp 90.4 0.24 8.2E-06 43.4 4.4 33 38-71 58-96 (412)
338 3syl_A Protein CBBX; photosynt 90.4 0.29 9.8E-06 41.2 4.7 35 32-68 68-106 (309)
339 1uf9_A TT1252 protein; P-loop, 90.4 0.22 7.7E-06 38.9 3.8 35 29-71 6-40 (203)
340 2r2a_A Uncharacterized protein 90.4 0.18 6.1E-06 39.9 3.2 36 34-70 7-48 (199)
341 1jjv_A Dephospho-COA kinase; P 90.3 0.23 7.9E-06 39.1 3.8 33 31-71 2-34 (206)
342 1aky_A Adenylate kinase; ATP:A 90.3 0.26 8.9E-06 39.3 4.1 33 31-70 4-36 (220)
343 1fnn_A CDC6P, cell division co 90.2 0.37 1.3E-05 41.8 5.5 38 33-72 46-84 (389)
344 1z6t_A APAF-1, apoptotic prote 90.2 0.33 1.1E-05 45.0 5.4 41 31-72 147-190 (591)
345 2vhj_A Ntpase P4, P4; non- hyd 90.1 0.15 5.1E-06 43.6 2.7 34 32-70 124-157 (331)
346 1zd8_A GTP:AMP phosphotransfer 90.0 0.15 5E-06 41.1 2.5 33 31-70 7-39 (227)
347 3jvv_A Twitching mobility prot 90.0 2.1 7.3E-05 37.0 10.0 36 32-68 124-159 (356)
348 3foz_A TRNA delta(2)-isopenten 90.0 0.28 9.4E-06 41.7 4.1 35 31-72 10-44 (316)
349 2vli_A Antibiotic resistance p 90.0 0.13 4.5E-06 39.5 2.1 30 31-65 5-34 (183)
350 3ake_A Cytidylate kinase; CMP 89.9 0.28 9.5E-06 38.5 4.0 33 32-71 3-35 (208)
351 1jwy_B Dynamin A GTPase domain 89.9 0.34 1.2E-05 40.9 4.8 68 138-206 129-211 (315)
352 1y63_A LMAJ004144AAA protein; 89.8 0.19 6.6E-06 38.9 2.9 34 31-70 10-43 (184)
353 4a74_A DNA repair and recombin 89.8 0.36 1.2E-05 38.5 4.7 40 31-71 25-69 (231)
354 3gj0_A GTP-binding nuclear pro 89.7 0.74 2.5E-05 36.4 6.5 88 138-234 62-152 (221)
355 2bjv_A PSP operon transcriptio 89.7 0.22 7.6E-06 41.0 3.4 34 38-72 35-68 (265)
356 3tau_A Guanylate kinase, GMP k 89.7 0.29 9.8E-06 38.8 3.9 25 30-55 7-31 (208)
357 2pt5_A Shikimate kinase, SK; a 89.6 0.21 7.1E-06 37.8 3.0 31 34-71 3-33 (168)
358 2orv_A Thymidine kinase; TP4A 89.6 0.58 2E-05 37.9 5.6 39 29-69 17-55 (234)
359 3nrs_A Dihydrofolate:folylpoly 89.5 0.6 2.1E-05 41.7 6.3 36 28-67 49-84 (437)
360 3ld9_A DTMP kinase, thymidylat 89.5 0.5 1.7E-05 38.1 5.2 41 31-72 21-61 (223)
361 1kgd_A CASK, peripheral plasma 89.5 0.26 9.1E-06 38.0 3.5 25 31-56 5-29 (180)
362 3t15_A Ribulose bisphosphate c 89.5 0.3 1E-05 41.0 4.1 33 32-69 37-69 (293)
363 1cke_A CK, MSSA, protein (cyti 89.5 0.32 1.1E-05 38.8 4.2 24 32-56 6-29 (227)
364 3v9p_A DTMP kinase, thymidylat 89.5 0.27 9.3E-06 39.8 3.7 35 31-67 25-63 (227)
365 1ksh_A ARF-like protein 2; sma 89.5 0.68 2.3E-05 35.4 5.9 67 138-205 60-131 (186)
366 2qt1_A Nicotinamide riboside k 89.4 0.32 1.1E-05 38.3 4.1 36 31-72 21-56 (207)
367 2c5m_A CTP synthase; cytidine 89.3 0.56 1.9E-05 38.3 5.2 42 31-73 23-65 (294)
368 4ag6_A VIRB4 ATPase, type IV s 89.3 0.46 1.6E-05 41.6 5.4 32 39-71 42-73 (392)
369 1zp6_A Hypothetical protein AT 89.3 0.3 1E-05 37.8 3.7 35 31-70 9-43 (191)
370 3cbq_A GTP-binding protein REM 89.2 1.9 6.3E-05 33.4 8.3 67 138-205 70-142 (195)
371 1mh1_A RAC1; GTP-binding, GTPa 89.2 0.54 1.8E-05 35.8 5.1 67 138-205 51-121 (186)
372 2bdt_A BH3686; alpha-beta prot 89.0 0.29 1E-05 37.9 3.5 23 31-54 2-24 (189)
373 3nwj_A ATSK2; P loop, shikimat 89.0 0.25 8.6E-06 40.6 3.2 34 31-71 48-81 (250)
374 1w78_A FOLC bifunctional prote 89.0 0.68 2.3E-05 41.1 6.2 35 29-67 47-81 (422)
375 3pxg_A Negative regulator of g 88.9 0.8 2.8E-05 41.2 6.7 22 37-58 206-227 (468)
376 4i1u_A Dephospho-COA kinase; s 88.9 0.43 1.5E-05 38.1 4.3 33 31-71 9-41 (210)
377 2j0v_A RAC-like GTP-binding pr 88.8 0.58 2E-05 36.7 5.2 67 138-205 55-125 (212)
378 3reg_A RHO-like small GTPase; 88.8 0.95 3.2E-05 34.9 6.3 90 138-232 69-162 (194)
379 3iij_A Coilin-interacting nucl 88.8 0.31 1.1E-05 37.4 3.4 25 31-56 11-35 (180)
380 3bwd_D RAC-like GTP-binding pr 88.7 0.67 2.3E-05 35.1 5.3 67 138-205 54-124 (182)
381 1f6b_A SAR1; gtpases, N-termin 88.7 1.5 5.1E-05 34.1 7.5 67 138-205 67-138 (198)
382 2wjg_A FEOB, ferrous iron tran 88.7 1.4 4.7E-05 33.6 7.2 86 138-233 52-145 (188)
383 3umf_A Adenylate kinase; rossm 88.7 0.48 1.6E-05 38.0 4.5 26 30-56 28-53 (217)
384 2wji_A Ferrous iron transport 88.6 1.8 6.1E-05 32.4 7.6 64 139-205 49-120 (165)
385 1bif_A 6-phosphofructo-2-kinas 88.6 0.58 2E-05 42.2 5.5 38 32-70 39-76 (469)
386 1ak2_A Adenylate kinase isoenz 88.5 0.44 1.5E-05 38.4 4.3 33 31-70 16-48 (233)
387 2qpt_A EH domain-containing pr 88.5 0.35 1.2E-05 44.6 4.0 65 140-205 154-230 (550)
388 2bbw_A Adenylate kinase 4, AK4 88.4 0.42 1.4E-05 38.9 4.1 26 31-57 27-52 (246)
389 3t34_A Dynamin-related protein 88.4 0.64 2.2E-05 40.2 5.5 67 139-206 135-216 (360)
390 3orf_A Dihydropteridine reduct 88.4 0.42 1.4E-05 39.0 4.1 41 27-73 18-58 (251)
391 3cr8_A Sulfate adenylyltranfer 88.3 0.34 1.2E-05 44.7 3.9 40 31-71 369-408 (552)
392 3cm0_A Adenylate kinase; ATP-b 88.3 0.51 1.7E-05 36.3 4.4 33 31-70 4-36 (186)
393 1w36_D RECD, exodeoxyribonucle 88.3 0.52 1.8E-05 44.0 5.2 35 33-67 165-202 (608)
394 3o47_A ADP-ribosylation factor 88.2 1.6 5.6E-05 37.2 7.9 67 138-205 207-278 (329)
395 3lda_A DNA repair protein RAD5 88.1 0.4 1.4E-05 42.3 4.0 40 31-71 178-222 (400)
396 1zak_A Adenylate kinase; ATP:A 88.1 0.34 1.2E-05 38.7 3.3 26 31-57 5-30 (222)
397 1m7b_A RND3/RHOE small GTP-bin 88.0 1.2 4.3E-05 33.9 6.5 67 138-205 53-123 (184)
398 4e22_A Cytidylate kinase; P-lo 87.9 0.44 1.5E-05 39.0 4.0 26 30-56 26-51 (252)
399 2eyu_A Twitching motility prot 87.9 0.94 3.2E-05 37.4 6.0 38 31-70 25-63 (261)
400 2qor_A Guanylate kinase; phosp 87.8 0.3 1E-05 38.5 2.8 25 31-56 12-36 (204)
401 1tf7_A KAIC; homohexamer, hexa 87.7 0.62 2.1E-05 42.6 5.2 38 31-70 281-318 (525)
402 3tr0_A Guanylate kinase, GMP k 87.4 0.48 1.6E-05 37.0 3.8 25 31-56 7-31 (205)
403 2vos_A Folylpolyglutamate synt 87.3 0.74 2.5E-05 41.7 5.4 34 30-67 63-96 (487)
404 4eaq_A DTMP kinase, thymidylat 87.2 0.82 2.8E-05 36.8 5.1 34 31-67 26-59 (229)
405 2j41_A Guanylate kinase; GMP, 87.1 0.49 1.7E-05 37.0 3.7 25 31-56 6-30 (207)
406 2jaq_A Deoxyguanosine kinase; 87.1 0.52 1.8E-05 36.7 3.9 24 33-57 2-25 (205)
407 1vt4_I APAF-1 related killer D 87.1 0.73 2.5E-05 45.8 5.4 41 31-72 150-192 (1221)
408 1jbw_A Folylpolyglutamate synt 87.0 0.77 2.6E-05 40.8 5.3 34 30-67 38-71 (428)
409 1w4r_A Thymidine kinase; type 87.0 1.2 4.1E-05 35.0 5.7 41 28-70 17-57 (195)
410 2q3h_A RAS homolog gene family 87.0 1.3 4.3E-05 34.3 6.1 66 139-205 67-136 (201)
411 3eph_A TRNA isopentenyltransfe 86.8 0.55 1.9E-05 41.4 4.1 34 32-72 3-36 (409)
412 2ewv_A Twitching motility prot 86.7 1 3.5E-05 39.2 5.8 36 31-68 136-172 (372)
413 3be4_A Adenylate kinase; malar 86.7 0.46 1.6E-05 37.8 3.3 25 31-56 5-29 (217)
414 3r20_A Cytidylate kinase; stru 86.5 0.62 2.1E-05 37.8 4.0 34 31-71 9-42 (233)
415 3ged_A Short-chain dehydrogena 86.4 0.56 1.9E-05 38.4 3.8 35 31-71 2-36 (247)
416 1njg_A DNA polymerase III subu 86.2 0.64 2.2E-05 36.9 4.0 26 32-58 46-71 (250)
417 3nva_A CTP synthase; rossman f 86.2 1.4 4.8E-05 40.0 6.4 42 31-73 3-45 (535)
418 1vht_A Dephospho-COA kinase; s 86.1 0.49 1.7E-05 37.6 3.2 32 31-70 4-35 (218)
419 2ocp_A DGK, deoxyguanosine kin 86.0 0.58 2E-05 37.9 3.6 25 31-56 2-26 (241)
420 3pxi_A Negative regulator of g 85.9 1 3.5E-05 43.2 5.8 38 33-72 523-560 (758)
421 2gk6_A Regulator of nonsense t 85.7 0.87 3E-05 42.6 5.2 34 34-67 197-230 (624)
422 2fna_A Conserved hypothetical 85.6 0.63 2.1E-05 39.6 3.9 34 34-71 32-65 (357)
423 2qmh_A HPR kinase/phosphorylas 85.6 1 3.5E-05 35.6 4.6 32 31-70 34-65 (205)
424 1fzq_A ADP-ribosylation factor 85.6 2.3 7.7E-05 32.4 6.8 67 138-205 58-129 (181)
425 2qz4_A Paraplegin; AAA+, SPG7, 85.5 0.91 3.1E-05 36.9 4.6 34 32-70 40-73 (262)
426 2i3b_A HCR-ntpase, human cance 85.5 0.81 2.8E-05 35.7 4.1 28 32-61 2-29 (189)
427 3eag_A UDP-N-acetylmuramate:L- 85.5 1.1 3.6E-05 38.3 5.2 31 31-65 108-138 (326)
428 1q3t_A Cytidylate kinase; nucl 85.3 0.64 2.2E-05 37.5 3.6 34 31-71 16-49 (236)
429 3ney_A 55 kDa erythrocyte memb 85.2 0.73 2.5E-05 36.3 3.7 25 30-55 18-42 (197)
430 3te6_A Regulatory protein SIR3 85.0 0.83 2.8E-05 38.9 4.3 27 31-58 45-71 (318)
431 1e8c_A UDP-N-acetylmuramoylala 85.0 1.2 4.2E-05 40.4 5.7 34 30-67 107-140 (498)
432 3hdt_A Putative kinase; struct 84.9 0.86 2.9E-05 36.7 4.1 34 31-71 14-47 (223)
433 3tlx_A Adenylate kinase 2; str 84.7 0.98 3.4E-05 36.7 4.4 25 31-56 29-53 (243)
434 3vtz_A Glucose 1-dehydrogenase 84.6 0.81 2.8E-05 37.7 4.0 39 28-72 11-49 (269)
435 1tue_A Replication protein E1; 84.6 0.55 1.9E-05 37.3 2.7 23 33-56 60-82 (212)
436 3a00_A Guanylate kinase, GMP k 84.6 0.53 1.8E-05 36.4 2.6 32 32-64 2-33 (186)
437 2vo1_A CTP synthase 1; pyrimid 84.6 2.3 7.8E-05 35.0 6.3 42 31-73 23-65 (295)
438 3bs4_A Uncharacterized protein 84.5 1.4 4.9E-05 36.2 5.4 41 31-73 21-61 (260)
439 1o5z_A Folylpolyglutamate synt 84.4 1.1 3.6E-05 40.1 4.9 34 30-67 51-84 (442)
440 1ofh_A ATP-dependent HSL prote 84.4 1.2 4.2E-05 37.1 5.1 35 32-71 51-85 (310)
441 1lvg_A Guanylate kinase, GMP k 84.2 0.73 2.5E-05 36.1 3.3 26 31-57 4-29 (198)
442 3fb4_A Adenylate kinase; psych 84.2 0.86 2.9E-05 36.0 3.8 22 34-56 3-24 (216)
443 3sfz_A APAF-1, apoptotic pepti 84.1 0.62 2.1E-05 47.0 3.6 40 31-71 147-189 (1249)
444 1ltq_A Polynucleotide kinase; 84.1 0.77 2.6E-05 38.4 3.7 32 34-70 4-35 (301)
445 3l6e_A Oxidoreductase, short-c 84.1 0.85 2.9E-05 36.8 3.8 35 31-71 3-37 (235)
446 2wjy_A Regulator of nonsense t 84.0 1.2 4E-05 43.1 5.3 34 34-67 373-406 (800)
447 2ehd_A Oxidoreductase, oxidore 83.8 0.78 2.7E-05 36.7 3.5 36 30-71 4-39 (234)
448 1ojl_A Transcriptional regulat 83.7 0.52 1.8E-05 39.8 2.4 34 38-72 31-64 (304)
449 3ice_A Transcription terminati 83.7 0.97 3.3E-05 39.7 4.1 30 31-62 174-203 (422)
450 2wtz_A UDP-N-acetylmuramoyl-L- 83.5 1.5 5.3E-05 40.1 5.7 34 30-67 145-178 (535)
451 3dii_A Short-chain dehydrogena 83.5 0.91 3.1E-05 36.8 3.8 36 30-71 1-36 (247)
452 3sr0_A Adenylate kinase; phosp 83.4 1.1 3.7E-05 35.6 4.0 22 34-56 3-24 (206)
453 1htw_A HI0065; nucleotide-bind 83.3 1.1 3.9E-05 33.8 3.9 25 31-56 33-57 (158)
454 2npi_A Protein CLP1; CLP1-PCF1 83.2 0.74 2.5E-05 41.4 3.3 40 31-72 138-178 (460)
455 1e4v_A Adenylate kinase; trans 82.9 0.97 3.3E-05 35.7 3.6 30 34-70 3-32 (214)
456 1ye8_A Protein THEP1, hypothet 82.9 1.1 3.9E-05 34.4 3.9 23 34-57 3-25 (178)
457 1e9r_A Conjugal transfer prote 82.9 1.5 5.3E-05 38.8 5.3 37 32-71 55-91 (437)
458 1o5i_A 3-oxoacyl-(acyl carrier 82.8 1.2 3.9E-05 36.3 4.1 38 28-71 16-53 (249)
459 2ekp_A 2-deoxy-D-gluconate 3-d 82.8 1 3.6E-05 36.2 3.8 35 31-71 2-36 (239)
460 2h92_A Cytidylate kinase; ross 82.7 0.54 1.8E-05 37.3 2.0 33 32-71 4-36 (219)
461 1znw_A Guanylate kinase, GMP k 82.6 0.93 3.2E-05 35.7 3.4 26 31-57 20-45 (207)
462 2l8b_A Protein TRAI, DNA helic 82.5 4 0.00014 31.6 6.7 110 31-152 50-162 (189)
463 2xb4_A Adenylate kinase; ATP-b 82.5 1.1 3.8E-05 35.7 3.9 21 36-56 4-24 (223)
464 3p19_A BFPVVD8, putative blue 82.5 1.1 3.6E-05 37.0 3.8 36 30-71 15-50 (266)
465 3gem_A Short chain dehydrogena 82.4 0.8 2.7E-05 37.6 3.0 39 28-72 24-62 (260)
466 1gwn_A RHO-related GTP-binding 82.3 1.9 6.3E-05 33.8 5.1 67 138-205 74-144 (205)
467 3r6d_A NAD-dependent epimerase 82.3 1.3 4.4E-05 35.0 4.2 38 29-72 3-41 (221)
468 3tpc_A Short chain alcohol deh 82.1 1.4 4.9E-05 35.8 4.5 36 31-72 7-42 (257)
469 3qiv_A Short-chain dehydrogena 82.1 1.3 4.4E-05 35.9 4.1 37 29-71 7-43 (253)
470 3pxi_A Negative regulator of g 82.0 2.5 8.6E-05 40.5 6.7 22 37-58 206-227 (758)
471 3guy_A Short-chain dehydrogena 82.0 0.87 3E-05 36.4 3.0 35 31-71 1-35 (230)
472 3r7w_A Gtpase1, GTP-binding pr 82.0 1.4 4.7E-05 37.2 4.4 67 138-205 50-127 (307)
473 2fwm_X 2,3-dihydro-2,3-dihydro 81.8 1.5 5.3E-05 35.5 4.6 36 30-71 6-41 (250)
474 4dqx_A Probable oxidoreductase 81.8 1.4 4.7E-05 36.5 4.3 38 28-71 24-61 (277)
475 3lyl_A 3-oxoacyl-(acyl-carrier 81.7 1.2 4.1E-05 36.0 3.8 36 30-71 4-39 (247)
476 1fjh_A 3alpha-hydroxysteroid d 81.6 1.3 4.3E-05 36.0 4.0 35 31-71 1-35 (257)
477 1z6g_A Guanylate kinase; struc 81.6 0.91 3.1E-05 36.2 3.0 25 31-56 23-47 (218)
478 3tzq_B Short-chain type dehydr 81.6 1.6 5.4E-05 36.0 4.5 37 30-72 10-46 (271)
479 2j1l_A RHO-related GTP-binding 81.6 1.4 4.7E-05 34.7 4.1 67 138-205 80-150 (214)
480 3dl0_A Adenylate kinase; phosp 81.5 0.97 3.3E-05 35.7 3.1 30 34-70 3-32 (216)
481 4gp7_A Metallophosphoesterase; 81.5 1.1 3.6E-05 34.2 3.2 20 31-51 9-28 (171)
482 4b79_A PA4098, probable short- 81.4 1.5 5E-05 35.8 4.2 36 31-72 11-46 (242)
483 3gvc_A Oxidoreductase, probabl 81.3 1.3 4.3E-05 36.8 3.9 36 30-71 28-63 (277)
484 3lk7_A UDP-N-acetylmuramoylala 81.3 2.3 7.9E-05 38.0 5.8 33 31-67 112-144 (451)
485 3zvl_A Bifunctional polynucleo 81.2 0.68 2.3E-05 41.0 2.3 34 32-71 258-291 (416)
486 3h7a_A Short chain dehydrogena 81.2 1.4 4.8E-05 35.8 4.1 35 31-71 7-41 (252)
487 3sc4_A Short chain dehydrogena 81.1 1.4 4.7E-05 36.7 4.1 39 28-72 6-44 (285)
488 1ex7_A Guanylate kinase; subst 81.0 0.91 3.1E-05 35.4 2.7 18 36-53 5-22 (186)
489 1ooe_A Dihydropteridine reduct 81.0 1.4 4.8E-05 35.3 4.0 36 31-72 3-38 (236)
490 1sxj_A Activator 1 95 kDa subu 80.8 1.5 5E-05 40.1 4.4 34 32-70 78-111 (516)
491 3m1a_A Putative dehydrogenase; 80.8 1.1 3.7E-05 37.1 3.3 36 30-71 4-39 (281)
492 3tqf_A HPR(Ser) kinase; transf 80.7 1.6 5.4E-05 33.7 3.8 27 31-63 16-42 (181)
493 1s96_A Guanylate kinase, GMP k 80.6 1.3 4.5E-05 35.4 3.6 25 31-56 16-40 (219)
494 1qvr_A CLPB protein; coiled co 80.6 1.3 4.5E-05 43.1 4.3 38 33-72 590-627 (854)
495 1geg_A Acetoin reductase; SDR 80.5 1.3 4.5E-05 36.0 3.7 35 31-71 2-36 (256)
496 2cfc_A 2-(R)-hydroxypropyl-COM 80.5 1.4 4.7E-05 35.6 3.8 35 31-71 2-36 (250)
497 2xzl_A ATP-dependent helicase 80.5 1.7 5.8E-05 42.0 4.9 35 34-68 377-411 (802)
498 3l77_A Short-chain alcohol deh 80.5 1.4 4.9E-05 35.2 3.9 35 31-71 2-36 (235)
499 1dhr_A Dihydropteridine reduct 80.4 1.5 5E-05 35.3 3.9 36 31-72 7-42 (241)
500 1um8_A ATP-dependent CLP prote 80.3 1.7 5.8E-05 37.7 4.5 35 32-71 73-107 (376)
No 1
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=100.00 E-value=7.3e-36 Score=251.29 Aligned_cols=226 Identities=17% Similarity=0.167 Sum_probs=179.6
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEeCCCCCCccccc-ccCCCccccccCc------------c
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMM-KIDQKPEVTKDMK------------M 94 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D~~~~~~~~~~-g~~~~~~~~~~~~------------~ 94 (295)
+++++|+|+|.|||+||||+|+|||..||+ . |+||++||+|+|.++++.++ +..+..++.+... .
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~-~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQ-EPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTM 80 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTT-STTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHH
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHh-CcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHH
Confidence 357999999999999999999999999999 8 99999999999988988888 5555544443211 1
Q ss_pred cccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC
Q 022525 95 VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ 174 (295)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~ 174 (295)
......++++++.+.. ...........+..+++.++ +.||+|||||||+++ ......+..+|.+|+|+.++
T Consensus 81 ~~~~~~~l~~l~~~~~------~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~ 151 (245)
T 3ea0_A 81 VQHISPSLDLIPSPAT------FEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS 151 (245)
T ss_dssp SEEEETTEEEECCCSS------HHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS
T ss_pred hEecCCCeEEEcCCCC------hHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc
Confidence 1223356666654321 11111122467888888888 799999999999987 45566788899999999999
Q ss_pred cchHHHHHHHHHHHhcCC--CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCc-cccccccCCC
Q 022525 175 DVALIDARKGITMFSKVQ--VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEM-DIRKGSDDGV 251 (295)
Q Consensus 175 ~~s~~~~~~~~~~l~~~~--~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~-~~~~a~~~g~ 251 (295)
..++..+.++++.+++.+ ...+++|+|+++.... ...+++.+.+|.++++.||++. .+.++...|+
T Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~-----------~~~~~~~~~~~~~v~~~ip~~~~~~~~a~~~g~ 220 (245)
T 3ea0_A 152 LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR-----------ITSDEIEKVIGRPISKRIPQDEDAMQESLLSGQ 220 (245)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT-----------SCHHHHHHHHTSCEEEEECCCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC-----------CCHHHHHHHhCCCeEEECCCChHHHHHHHHcCC
Confidence 999999999999998876 5678999999974311 1246788889999999999996 7999999999
Q ss_pred ceEEcCCCChHHHHHHHHHHHHHH
Q 022525 252 PVVISAPDSTVSRAYGEVAVNVVN 275 (295)
Q Consensus 252 ~i~~~~~~s~~~~~~~~l~~~l~~ 275 (295)
|++++.|+++++++|++|+++|++
T Consensus 221 ~v~~~~~~s~~~~~~~~la~~l~g 244 (245)
T 3ea0_A 221 SVLKVAPKSQLSKTIVDWALHLNG 244 (245)
T ss_dssp CHHHHCTTSHHHHHHHHHHHCC--
T ss_pred CccccCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998865
No 2
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=100.00 E-value=2.5e-35 Score=246.91 Aligned_cols=226 Identities=23% Similarity=0.308 Sum_probs=180.8
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC-ccccccCc--------ccccccC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKDMK--------MVPIENY 100 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~-~~~~~~~~--------~~~~~~~ 100 (295)
|+++|+|+|.|||+||||+|+|||..||+ +|+||++||+|+++++++.++|..+. .++.+... ..+....
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 79 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGD-RGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFD 79 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSST
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCC
Confidence 46999999999999999999999999999 99999999999998899999998775 34332210 1111124
Q ss_pred CceeeccccccCCCCCCccCCchH-HHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHH
Q 022525 101 GVKCMSMGFLVPSSSPVVWRGPMV-MSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI 179 (295)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~ 179 (295)
++++++.. ..... .... ...+..+++.++ ..||+|||||||+++ ......+..+|.+|+|+.++..++.
T Consensus 80 ~l~~lp~~------~~~~~-~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~ 149 (237)
T 1g3q_A 80 NVYVLPGA------VDWEH-VLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLT 149 (237)
T ss_dssp TEEEECCC------CSHHH-HHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHH
T ss_pred CEEEEeCC------Cccch-hhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHH
Confidence 45555411 11000 0011 356778888888 899999999999988 4556677889999999999999999
Q ss_pred HHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCC
Q 022525 180 DARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPD 259 (295)
Q Consensus 180 ~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~ 259 (295)
.+.+.++.+++.+.+.+++|+|+++..... ...+++.+.+|.++++.||+++.+.++...|+|+.++.|+
T Consensus 150 ~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~----------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~ 219 (237)
T 1g3q_A 150 DTMKVGIVLKKAGLAILGFVLNRYGRSDRD----------IPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPE 219 (237)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEETSCTTC----------CCHHHHHHHHCSCEEEEEECCHHHHHHHHHTSCHHHHSTT
T ss_pred HHHHHHHHHHhCCCceEEEEEecCCcccch----------hHHHHHHHHhCccceeeCCCChHHHHHHHcCCCeEEeCCC
Confidence 999999999988888999999999843111 3367788889999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHH
Q 022525 260 STVSRAYGEVAVNVVNR 276 (295)
Q Consensus 260 s~~~~~~~~l~~~l~~~ 276 (295)
++++++|.+|+++|+++
T Consensus 220 ~~~~~~~~~la~~l~~~ 236 (237)
T 1g3q_A 220 SKGAKAFVKLAEEIEKL 236 (237)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999999753
No 3
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=100.00 E-value=2.7e-35 Score=250.01 Aligned_cols=229 Identities=16% Similarity=0.254 Sum_probs=181.2
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC--ccccccC--------cccc-cc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK--PEVTKDM--------KMVP-IE 98 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~--~~~~~~~--------~~~~-~~ 98 (295)
|+++|+|+|.|||+||||+|+|||.+||+ +|++|++||+|+++++++.++|.... .++.+.. .... ..
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 79 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKR 79 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCC
Confidence 47999999999999999999999999999 99999999999988899999988654 2222210 0111 12
Q ss_pred cCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCC-CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch
Q 022525 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWG-NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA 177 (295)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s 177 (295)
..++++++.+... .........+..+++.++ . .||+|||||||+++ ......+..+|.+|+|+.++..+
T Consensus 80 ~~~l~~lp~~~~~-------~~~~~~~~~~~~~l~~l~-~~~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s 149 (260)
T 3q9l_A 80 TENLYILPASQTR-------DKDALTREGVAKVLDDLK-AMDFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSS 149 (260)
T ss_dssp STTEEEECCCSCC-------CTTSSCHHHHHHHHHHHH-HTTCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHH
T ss_pred CCCEEEecCCCcc-------chhhCCHHHHHHHHHHHh-ccCCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhH
Confidence 3566776654321 122334677888888888 7 99999999999988 45667777999999999999999
Q ss_pred HHHHHHHHHHHhcCCC--------CeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccC
Q 022525 178 LIDARKGITMFSKVQV--------PILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDD 249 (295)
Q Consensus 178 ~~~~~~~~~~l~~~~~--------~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~ 249 (295)
+..+.++++.++..+. ..+++|+|+++....... .....+++.+.+|.++++.||++..+.++...
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~ 223 (260)
T 3q9l_A 150 VRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRG------DMLSMEDVLEILRIKLVGVIPEDQSVLRASNQ 223 (260)
T ss_dssp HHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTT------SSCCHHHHHHHHCSEEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccccc------cccCHHHHHHHhCCceEEecCCChhHHHHHHc
Confidence 9999999999987542 478999999974211100 01124788889999999999999999999999
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHHHH
Q 022525 250 GVPVVISAPDSTVSRAYGEVAVNVVNR 276 (295)
Q Consensus 250 g~~i~~~~~~s~~~~~~~~l~~~l~~~ 276 (295)
|.|+++ .|+++++++|.+++++|+++
T Consensus 224 g~~v~~-~~~s~~~~~~~~la~~l~~~ 249 (260)
T 3q9l_A 224 GEPVIL-DINADAGKAYADTVERLLGE 249 (260)
T ss_dssp TCCGGG-CTTCHHHHHHHHHHHHHTTC
T ss_pred CCCeEE-CCCCHHHHHHHHHHHHHhcC
Confidence 999999 99999999999999999763
No 4
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=100.00 E-value=2.7e-35 Score=250.54 Aligned_cols=226 Identities=26% Similarity=0.373 Sum_probs=180.0
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC-ccccccCc-------ccccccCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKDMK-------MVPIENYG 101 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~-~~~~~~~~-------~~~~~~~~ 101 (295)
|+++|+|+|+|||+||||+|+|||..||+ .|++|++||+|+++++++.++|..+. .++.+... .......+
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 79 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQ-LGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGG 79 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHH-TTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGG
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHh-CCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCC
Confidence 46999999999999999999999999999 99999999999988899999998775 34332210 00011244
Q ss_pred ceeeccccccCCCCCCccCCchH-HHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHH
Q 022525 102 VKCMSMGFLVPSSSPVVWRGPMV-MSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALID 180 (295)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~ 180 (295)
+++++.. .... ..... ...+..+++.++ ..||+|||||||+.+ ......+..+|.+|+|+.++..++..
T Consensus 80 l~~lp~~------~~~~-~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~ 149 (263)
T 1hyq_A 80 VKVVPAG------VSLE-GLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITD 149 (263)
T ss_dssp CEEEECC------SCHH-HHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHH
T ss_pred eEEEcCC------CCcC-hhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHH
Confidence 5555521 1110 01112 567788888888 899999999999988 45566777899999999999999999
Q ss_pred HHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCCC
Q 022525 181 ARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDS 260 (295)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~s 260 (295)
+.+.++.+++.+.+.+++|+|+++.. ... ...+++.+.+|.++++.||+++.+.++...|.|+.++.|++
T Consensus 150 ~~~~~~~l~~~~~~~~~vv~N~~~~~-------~~~---~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~ 219 (263)
T 1hyq_A 150 GLKTKIVAERLGTKVLGVVVNRITTL-------GIE---MAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNS 219 (263)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEECTT-------THH---HHHHHHHHHTTSCEEEEEECCHHHHHHHHHTSCHHHHCTTS
T ss_pred HHHHHHHHHhcCCCeeEEEEccCCcc-------ccc---chHHHHHHHhCCCeEEECCCCHHHHHHHHcCCceEEcCCCC
Confidence 99999999888888999999999732 111 34677888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 022525 261 TVSRAYGEVAVNVVNR 276 (295)
Q Consensus 261 ~~~~~~~~l~~~l~~~ 276 (295)
+++++|.+++++|.++
T Consensus 220 ~~~~~~~~la~~l~~~ 235 (263)
T 1hyq_A 220 PAARAIVELANYIAGG 235 (263)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999886
No 5
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=100.00 E-value=3.8e-34 Score=243.38 Aligned_cols=228 Identities=43% Similarity=0.755 Sum_probs=173.1
Q ss_pred cCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCccccc--ccCCcee
Q 022525 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPI--ENYGVKC 104 (295)
Q Consensus 27 ~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~ 104 (295)
+..++++|+|+|+||||||||+|+|||..||+ .|+||++||+|+|+++++.++|..+...+.......+. ...++++
T Consensus 14 l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~-~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~v 92 (262)
T 2ph1_A 14 LGKIKSRIAVMSGKGGVGKSTVTALLAVHYAR-QGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKV 92 (262)
T ss_dssp HTTCSCEEEEECSSSCTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEE
T ss_pred hccCCeEEEEEcCCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEE
Confidence 34457999999999999999999999999999 99999999999999888888988754322111112222 3456777
Q ss_pred eccccccCCCCC-CccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHH
Q 022525 105 MSMGFLVPSSSP-VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 105 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~ 183 (295)
++.+........ ...........+.++++.+++..||||||||||+++........+..+|.+|+|+.++..++..+.+
T Consensus 93 lp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~ 172 (262)
T 2ph1_A 93 MSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEK 172 (262)
T ss_dssp ECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHH
T ss_pred EeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHH
Confidence 777654433221 1122334566788888877546899999999999885334444444789999999999999999999
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEE
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVI 255 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~ 255 (295)
.++.+++.+.+.+|+|+|+++...+.+......+.....+++.+.+|.++++.||++..+.++...|+|++.
T Consensus 173 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~~~~ 244 (262)
T 2ph1_A 173 AINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKLADSGRIEEY 244 (262)
T ss_dssp HHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEEECCBCHHHHHHHHTTCGGGC
T ss_pred HHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEEEeeCchHHHHhccCCceeec
Confidence 999999889999999999998543332222222233457889999999999999999999999999999863
No 6
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=100.00 E-value=7.9e-34 Score=246.85 Aligned_cols=228 Identities=20% Similarity=0.202 Sum_probs=176.1
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccC-------------cc
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM-------------KM 94 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~-------------~~ 94 (295)
.+.+++|+|+ +||||||||+|+|||.+||+ +|++|++||+|+|+ ++..+++.....++.+.. ..
T Consensus 38 ~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~~-~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~ 114 (307)
T 3end_A 38 ITGAKVFAVY-GKGGIGKSTTSSNLSAAFSI-LGKRVLQIGCDPKH-DSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDF 114 (307)
T ss_dssp --CCEEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEEEESSSC-CTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHH
T ss_pred cCCceEEEEE-CCCCccHHHHHHHHHHHHHH-CCCeEEEEeCCCCC-CHHHHhCccCCCCHHHHHhhccccccCCCHHHh
Confidence 4458999999 89999999999999999999 99999999999987 455666655554443321 11
Q ss_pred cccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHh--ccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeC
Q 022525 95 VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSRE--VDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVST 172 (295)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~ 172 (295)
......++++++.+........ ..........+++. +. +.||||||||||++... .....+..||.+|+|+.
T Consensus 115 i~~~~~~l~vlp~~~~~~~~~~----~~~~~~~~~~~l~~~~~~-~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~ 188 (307)
T 3end_A 115 VFEGFNGVMCVEAGGPPAGTGC----GGYVVGQTVKLLKQHHLL-DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTA 188 (307)
T ss_dssp CEECGGGCEEEECCCCCSSSSC----TTHHHHHHHHHHHHTTTT-SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEEC
T ss_pred hccCCCCceEEECCCccccccc----chhhhHHHHHHHHhhhcc-ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEec
Confidence 1123456777766543222111 11223344455555 55 79999999999988742 23455678999999999
Q ss_pred CCcchHHHHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcccccccc
Q 022525 173 PQDVALIDARKGITMFSK----VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSD 248 (295)
Q Consensus 173 ~~~~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~ 248 (295)
++..++..+.++++.+++ .+.+++|+|+|+++. ....+++.+.+|.++++.||+++.+.++..
T Consensus 189 ~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~-------------~~~~~~~~~~~g~~v~~~Ip~~~~v~~a~~ 255 (307)
T 3end_A 189 NDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-------------TDEVDRFCKETNFRRLAHMPDLDAIRRSRL 255 (307)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-------------CHHHHHHHHHHTCCEEEEECCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc-------------HHHHHHHHHHcCCCceeeCCccHHHHHHHH
Confidence 999999999999999986 356678999999972 245888899999999999999999999999
Q ss_pred CCCceEEcCCC---ChHHHHHHHHHHHHHHHH
Q 022525 249 DGVPVVISAPD---STVSRAYGEVAVNVVNRL 277 (295)
Q Consensus 249 ~g~~i~~~~~~---s~~~~~~~~l~~~l~~~~ 277 (295)
.|+|++++.|. ++++++|++|+++|+++.
T Consensus 256 ~g~~v~~~~p~~~~s~~~~~~~~la~~l~~~~ 287 (307)
T 3end_A 256 KKKTLFEMDEDQDVLAARAEYIRLAESLWRGL 287 (307)
T ss_dssp TTCCTTTSCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCeEeeCCccccHHHHHHHHHHHHHHHhcC
Confidence 99999999998 899999999999998754
No 7
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=1.2e-33 Score=244.87 Aligned_cols=231 Identities=20% Similarity=0.177 Sum_probs=169.0
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccccc------------Cccccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------------MKMVPI 97 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~------------~~~~~~ 97 (295)
..|+|||+ +||||||||+|+|||.+||+ .|+||++||+|+|.+++..+.+.......... ......
T Consensus 47 ~aKVIAIa-GKGGVGKTTtavNLA~aLA~-~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 124 (314)
T 3fwy_A 47 GAKVFAVY-GKGGIGKSTTSSNLSAAFSI-LGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFE 124 (314)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEE
T ss_pred CceEEEEE-CCCccCHHHHHHHHHHHHHH-CCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheee
Confidence 47999998 69999999999999999999 99999999999998776544433322111100 011222
Q ss_pred ccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch
Q 022525 98 ENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA 177 (295)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s 177 (295)
...++.+++.+...+. ..+........+..+.+...++.||+|++||+++.....+ ..++..||.+|||+.++.++
T Consensus 125 ~~~~i~~v~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e~~A 200 (314)
T 3fwy_A 125 GFNGVMCVEAGGPPAG---TGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTANDFDS 200 (314)
T ss_dssp CGGGCEEEECCCCCTT---CSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSSHHH
T ss_pred cCCCeEEEeCCCCccc---chhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCcHHH
Confidence 3345556555432221 1222222334444444332237899999999998875333 25567899999999999999
Q ss_pred HHHHHHHHHHHhcC----CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCce
Q 022525 178 LIDARKGITMFSKV----QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPV 253 (295)
Q Consensus 178 ~~~~~~~~~~l~~~----~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i 253 (295)
+.++.++++.++.. +.++.|+|+|+... ....+++.++++.++++.||++..+.++...|+|+
T Consensus 201 l~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-------------~~~v~~~a~~~~~~~lg~IP~d~~Vr~a~~~G~pv 267 (314)
T 3fwy_A 201 IYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-------------TDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTL 267 (314)
T ss_dssp HHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-------------CHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEcCCCc-------------hhHHHHHHHHhCCeEEEEecCchHHHHHHHcCCce
Confidence 99999888877653 45667899987541 24578899999999999999999999999999999
Q ss_pred EEcCCCChHHHH---HHHHHHHHHHHHHH
Q 022525 254 VISAPDSTVSRA---YGEVAVNVVNRLQE 279 (295)
Q Consensus 254 ~~~~~~s~~~~~---~~~l~~~l~~~~~~ 279 (295)
+++.|+|+.+.+ |++||++|++..+.
T Consensus 268 v~~~P~S~~a~aa~~Y~~LA~eil~~~~~ 296 (314)
T 3fwy_A 268 FEMDEDQDVLAARAEYIRLAESLWRGLDP 296 (314)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred EEECCCChhhHHHHHHHHHHHHHHhCCCC
Confidence 999999986555 99999999876543
No 8
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=100.00 E-value=5.2e-34 Score=233.71 Aligned_cols=200 Identities=18% Similarity=0.193 Sum_probs=165.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
|++|+|+|+|||+||||+|+|||..|++ +|++|++||+|+|+ ++..+++..+ .++++++.+
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~-~g~~vlliD~D~~~-~~~~~~~~~~---------------~~~~~~~~~-- 61 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSR-SGYNIAVVDTDPQM-SLTNWSKAGK---------------AAFDVFTAA-- 61 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTC-HHHHHHTTSC---------------CSSEEEECC--
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEECCCCC-CHHHHHhcCC---------------CCCcEEecC--
Confidence 5899999999999999999999999999 99999999999987 4455554321 124444432
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhc
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSK 190 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~ 190 (295)
...+...++.++ +.||+|||||||+.+ ......+..+|.+++|+.++..+ ..+.+.++.+++
T Consensus 62 --------------~~~l~~~l~~l~-~~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~ 123 (206)
T 4dzz_A 62 --------------SEKDVYGIRKDL-ADYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLE 123 (206)
T ss_dssp --------------SHHHHHTHHHHT-TTSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHT
T ss_pred --------------cHHHHHHHHHhc-CCCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHH
Confidence 156778888888 889999999999996 55667778899999999999999 999999999986
Q ss_pred CC-----CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE-EeecCCccccccccCCCceEEcCCCChHHH
Q 022525 191 VQ-----VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI-GEIPIEMDIRKGSDDGVPVVISAPDSTVSR 264 (295)
Q Consensus 191 ~~-----~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~Ip~~~~~~~a~~~g~~i~~~~~~s~~~~ 264 (295)
.+ .++ ++|+|+++.. ... .....+..+.+|.+++ +.||++..+.++...|.|+++ .|++++++
T Consensus 124 ~~~~~~~~~~-~vv~N~~~~~-------~~~--~~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v~~-~~~s~~~~ 192 (206)
T 4dzz_A 124 AQAYSRKVEA-RFLITRKIEM-------ATM--LNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFE-SSDGAAKG 192 (206)
T ss_dssp TSCGGGCCEE-EEEECSBCTT-------EEE--EHHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCGGG-SSCHHHHH
T ss_pred HHHhCCCCcE-EEEEeccCCC-------chH--HHHHHHHHHHcCCceeeccccccHHHHHHHHcCCCccc-CCchHHHH
Confidence 53 344 9999999732 111 1346677777899988 799999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHH
Q 022525 265 AYGEVAVNVVNRLQ 278 (295)
Q Consensus 265 ~~~~l~~~l~~~~~ 278 (295)
+|.+|+++|+++++
T Consensus 193 ~~~~la~~i~~~le 206 (206)
T 4dzz_A 193 EIEILTKEIVRIFE 206 (206)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998763
No 9
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=100.00 E-value=8.6e-34 Score=239.46 Aligned_cols=221 Identities=18% Similarity=0.116 Sum_probs=169.8
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcc--------ccccC------------
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE--------VTKDM------------ 92 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~--------~~~~~------------ 92 (295)
.|+| |+||||||||+|+|||..||+ +|+||++||+|+| ++++.+||..+... +.+..
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMAS-DYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLIL 78 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTT-TCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCS
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCccccc
Confidence 3888 889999999999999999999 9999999999998 79999998865432 11100
Q ss_pred ----cccc----cccCCcee-eccccccCCCCCCccCCchHHHHHHHHHHhc-cCCCccEEEEcCCCCCCccchhhhhhc
Q 022525 93 ----KMVP----IENYGVKC-MSMGFLVPSSSPVVWRGPMVMSALRKMSREV-DWGNLDILVIDMPPGTGDAQLTTTQTL 162 (295)
Q Consensus 93 ----~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~yD~iiiD~~~~~~~~~~~~~~l~ 162 (295)
...| ....++.+ ++.+.......... ......+..+++.+ + ..||+|||||||+++. .....+.
T Consensus 79 ~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~l~~l~~-~~yD~viiD~pp~~~~--~~~~~l~ 152 (254)
T 3kjh_A 79 NPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCY---CRENSFLGSVVSALFL-DKKEAVVMDMGAGIEH--LTRGTAK 152 (254)
T ss_dssp SCCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCC---HHHHHHHHHHHHHHHH-TCCSEEEEEECTTCTT--CCHHHHT
T ss_pred CCchhccHHhcccccCCeEEEEEecccccCCCCCC---cchHHHHHHHHHHhcc-CCCCEEEEeCCCcccH--HHHHHHH
Confidence 0000 01112222 32222111111111 11125588888888 7 8999999999999984 5567778
Q ss_pred cCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhC-CcEEEeecCCc
Q 022525 163 QLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMG-LKVIGEIPIEM 241 (295)
Q Consensus 163 ~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~Ip~~~ 241 (295)
.+|.+|+|+.++..++..+.++.+.+.+.+.+.+++|+|+++. ....+++.+.++ .++.+.||++.
T Consensus 153 ~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-------------~~~~~~~~~~~~~~~~~~~Ip~~~ 219 (254)
T 3kjh_A 153 AVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-------------IKEEKLIKKHLPEDKILGIIPYNE 219 (254)
T ss_dssp TCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-------------HHHHHHHHHHSCGGGEEEEEECCH
T ss_pred HCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-------------hhHHHHHHHHhcCCcccccccCcH
Confidence 9999999999999999999999998888888888999999872 134677888887 78889999999
Q ss_pred cccccccCCCceEEcCCCChHHHHHHHHHHHHHHHH
Q 022525 242 DIRKGSDDGVPVVISAPDSTVSRAYGEVAVNVVNRL 277 (295)
Q Consensus 242 ~~~~a~~~g~~i~~~~~~s~~~~~~~~l~~~l~~~~ 277 (295)
.+.++...|+|++++.| +++++|++++++|+++.
T Consensus 220 ~~~~a~~~g~~~~~~~~--~~~~~~~~la~~l~~~~ 253 (254)
T 3kjh_A 220 LFIELSLKGEEIWQSTN--PAFVNLHDIYQKLRLEV 253 (254)
T ss_dssp HHHSCSSSSCCTTSTTS--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccccCCc--HHHHHHHHHHHHHHhhc
Confidence 99999999999998876 79999999999998875
No 10
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=100.00 E-value=1.1e-33 Score=241.40 Aligned_cols=234 Identities=20% Similarity=0.198 Sum_probs=170.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCc----------ccccccC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK----------MVPIENY 100 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~ 100 (295)
|++|+| ++||||||||+|+|||..||+ +|+||++||+|+|++.+..+++..+..++.+... .......
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~-~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~ 78 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHA-MGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYG 78 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHT-TTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGG
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHH-CCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCC
Confidence 589999 689999999999999999999 9999999999999988887777665544433211 1112345
Q ss_pred CceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhh-hhhccCceEEEeeCCCcchHH
Q 022525 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTT-TQTLQLSGALIVSTPQDVALI 179 (295)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~-~~l~~ad~viiv~~~~~~s~~ 179 (295)
++++++.+...... .....+......+.+.++.++ +.||||||||||.+....+.. .....+|.+|+|+.++..++.
T Consensus 79 ~l~vl~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~-~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~ 156 (269)
T 1cp2_A 79 GIRCVESGGPEPGV-GCAGRGIITSINMLEQLGAYT-DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALY 156 (269)
T ss_dssp GCEEEECCCCCTTS-SCHHHHHHHHHHHHHHTTCCC-TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHH
T ss_pred CeeEEeCCCchhhc-cccCcchhhHHHHHHHHHhhc-cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHH
Confidence 66777655322111 000000001112333344445 789999999998765322211 112369999999999999999
Q ss_pred HHHHHHHHHhcC----CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEE
Q 022525 180 DARKGITMFSKV----QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVI 255 (295)
Q Consensus 180 ~~~~~~~~l~~~----~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~ 255 (295)
.+.++++.++.. +.+++++|+|+++.. ......+++.+.+|.++++.||++..+.++...|+|+++
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----------~~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a~~~g~~v~~ 226 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKVA----------NEYELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIE 226 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----------CCHHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----------hhHHHHHHHHHHcCCcccccCCCCcHHHHHHHcCCceEE
Confidence 998888877642 566789999998621 012457788888999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHH
Q 022525 256 SAPDSTVSRAYGEVAVNVVNRLQ 278 (295)
Q Consensus 256 ~~~~s~~~~~~~~l~~~l~~~~~ 278 (295)
+.|+++++++|.+++++|+++.+
T Consensus 227 ~~~~s~~~~~~~~l~~~l~~~~~ 249 (269)
T 1cp2_A 227 YDPTCEQAEEYRELARKVDANEL 249 (269)
T ss_dssp HCTTSHHHHHHHHHHHHHHHCCC
T ss_pred ECCCChHHHHHHHHHHHHHhccc
Confidence 99999999999999999987643
No 11
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=100.00 E-value=1.5e-34 Score=245.22 Aligned_cols=236 Identities=25% Similarity=0.322 Sum_probs=170.0
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccc-----cCCcee
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIE-----NYGVKC 104 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~ 104 (295)
++++|+|+|.|||+||||+|+|||..||+ .|+||++||+|+|+ +++.++|..+..++.+...-.+.. ..++++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~-~~~~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~v 82 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLAR-LGKRVLLVDLDPQG-NATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHL 82 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHH-TTCCEEEEECCTTC-HHHHHTTCCCSCCHHHHHTTCCGGGTCEEETTEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHH-CCCCEEEEECCCCc-CHHHHhCCCCCCCHHHHHcCCCHHHHccccCCEEE
Confidence 47999999999999999999999999999 99999999999985 677788877644443221100000 245555
Q ss_pred eccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHH
Q 022525 105 MSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKG 184 (295)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~ 184 (295)
++.+........ ..... ...+.++++. ..||||||||||+++ ......+..||.+|+|+.++..++..+.++
T Consensus 83 lp~~~~~~~~~~-~l~~~--~~~l~~~l~~---~~yD~iiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~ 154 (257)
T 1wcv_1 83 LPATPDLVGATV-ELAGA--PTALREALRD---EGYDLVLLDAPPSLS--PLTLNALAAAEGVVVPVQAEYYALEGVAGL 154 (257)
T ss_dssp ECCCTTHHHHHH-HHTTC--TTHHHHHCCC---TTCSEEEEECCSSCC--HHHHHHHHHCSEEEEEEESSTHHHHHHHHH
T ss_pred EeCChhHHHHHH-HHhhH--HHHHHHHhcc---cCCCEEEEeCCCCCC--HHHHHHHHHCCeEEEEecCchHHHHHHHHH
Confidence 554321100000 00000 0334444433 579999999999988 445566778999999999999999988877
Q ss_pred HHHHhc------CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE-EeecCCccccccccCCCceEEcC
Q 022525 185 ITMFSK------VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI-GEIPIEMDIRKGSDDGVPVVISA 257 (295)
Q Consensus 185 ~~~l~~------~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~Ip~~~~~~~a~~~g~~i~~~~ 257 (295)
++.++. .+.+++++|+|+++... ...+...+++.+.+|.+++ +.||++..+.++...|+|++++.
T Consensus 155 ~~~l~~~~~~~~~~~~~~gvv~N~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~ 226 (257)
T 1wcv_1 155 LATLEEVRAGLNPRLRLLGILVTMYDGRT--------LLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHA 226 (257)
T ss_dssp HHHHHHHHHHTCTTCEEEEEEEESBCTTC--------SHHHHHHHHHHHHHGGGBCSCCCBCCHHHHHHHHHTCCHHHHC
T ss_pred HHHHHHHHHHhCCCceEEEEEEEeECCCc--------HHHHHHHHHHHHHccccccCccCCCcHHHHHHHHcCCCHHHhC
Confidence 777754 35667899999997421 1122345667777888876 69999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHh
Q 022525 258 PDSTVSRAYGEVAVNVVNRLQELAKE 283 (295)
Q Consensus 258 ~~s~~~~~~~~l~~~l~~~~~~~~~~ 283 (295)
|.++++++|.+++++|+++++.....
T Consensus 227 ~~~~~~~~~~~la~~l~~~~~~~~~~ 252 (257)
T 1wcv_1 227 PTSPGAHAYRRLAEEVMARVQEAGSH 252 (257)
T ss_dssp TTSHHHHHHHHHHHHHHHHHC-----
T ss_pred CCChHHHHHHHHHHHHHHhhcccCcc
Confidence 99999999999999999887665544
No 12
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=100.00 E-value=2.5e-33 Score=241.71 Aligned_cols=234 Identities=21% Similarity=0.232 Sum_probs=168.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccC------------cccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM------------KMVPIE 98 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~------------~~~~~~ 98 (295)
|++|+| ++||||||||+|+|||.+||+ +|+||++||+|+|++.+..+++.....++.+.. ......
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~-~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~ 79 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAE-MGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAG 79 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHH-TTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEEC
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHH-CCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccC
Confidence 699999 689999999999999999999 999999999999998887777765544433211 011122
Q ss_pred cCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchh-hhhhccCceEEEeeCCCcch
Q 022525 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT-TTQTLQLSGALIVSTPQDVA 177 (295)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~-~~~l~~ad~viiv~~~~~~s 177 (295)
..++++++.+....... ....+......+.+.+..++ +.||||||||||.+....+. ......+|.+|+|+.++..+
T Consensus 80 ~~~l~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~-~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s 157 (289)
T 2afh_E 80 YGGVKCVESGGPEPGVG-CAGRGVITAINFLEEEGAYE-DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMA 157 (289)
T ss_dssp GGGCEEEECCCCCTTTC-CHHHHHHHHHHHHHHTTCSS-TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHH
T ss_pred CCCeEEEeCCCcccccc-ccchhhhHHHHHHHHHHhhc-cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHH
Confidence 35666666553221110 00000000112222333344 78999999999876532221 11124699999999999999
Q ss_pred HHHHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCce
Q 022525 178 LIDARKGITMFSK----VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPV 253 (295)
Q Consensus 178 ~~~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i 253 (295)
+..+.++++.++. .+.++.++|+|+++.. . .....+++.+.+|.++++.||++..+.++...|+|+
T Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~------~----~~~~~~~l~~~~g~~~l~~Ip~~~~~~~a~~~g~~v 227 (289)
T 2afh_E 158 MYAANNISKGIVKYANSGSVRLGGLICNSRNTD------R----EDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTV 227 (289)
T ss_dssp HHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT------T----HHHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEecCCch------h----HHHHHHHHHHHcCccccccCCCchhHHHHHHcCCCc
Confidence 9998888877764 3667789999997521 1 124577788889999999999999999999999999
Q ss_pred EEcCCCChHHHHHHHHHHHHHHHHH
Q 022525 254 VISAPDSTVSRAYGEVAVNVVNRLQ 278 (295)
Q Consensus 254 ~~~~~~s~~~~~~~~l~~~l~~~~~ 278 (295)
+++.|+++++++|.+|+++|+++..
T Consensus 228 ~~~~~~s~~~~~~~~la~~l~~~~~ 252 (289)
T 2afh_E 228 IEYDPKAKQADEYRALARKVVDNKL 252 (289)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHCCC
T ss_pred eeeCCCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999987643
No 13
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.4e-32 Score=243.65 Aligned_cols=249 Identities=18% Similarity=0.149 Sum_probs=150.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC-------------------cccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-------------------PEVTKD 91 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~-------------------~~~~~~ 91 (295)
||+|+|+|+||||||||+|+|||+.||+ .|+|||+||+|+|++.+..+++.... .++.+.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 79 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFAL-QGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAI 79 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHH-TTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHh-CCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHH
Confidence 5899999999999999999999999999 99999999999998777666653210 122221
Q ss_pred C--------------cccccccCCceeeccccccCCCCCCccC-----------CchHHHHHHHHHHhccCC--CccEEE
Q 022525 92 M--------------KMVPIENYGVKCMSMGFLVPSSSPVVWR-----------GPMVMSALRKMSREVDWG--NLDILV 144 (295)
Q Consensus 92 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~l~~~--~yD~ii 144 (295)
. ...+....+++++|.+............ .......+.++++.++ . .|||||
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~-~~~~yD~VI 158 (361)
T 3pg5_A 80 FVPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAME-RDDRYDVIF 158 (361)
T ss_dssp GHHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHH-HTTCCSEEE
T ss_pred HHHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHh-hccCCCEEE
Confidence 1 1222233466666655322221110000 0000134777788776 5 999999
Q ss_pred EcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcC--------------------C------------
Q 022525 145 IDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV--------------------Q------------ 192 (295)
Q Consensus 145 iD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~--------------------~------------ 192 (295)
|||||+++ ..+...+..||.+|+|+.++..++.++.++++.+++. .
T Consensus 159 ID~pP~l~--~~~~~aL~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 236 (361)
T 3pg5_A 159 FDVGPSLG--PFNRTVLLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGG 236 (361)
T ss_dssp EECCSCCS--HHHHHHHTTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTS
T ss_pred EECCCCcC--HHHHHHHHHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcccccccccccccc
Confidence 99999998 6677788899999999999999999988888777543 1
Q ss_pred -----CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHh-----------CCcEEEeecCC-ccccccccCCCceEE
Q 022525 193 -----VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEM-----------GLKVIGEIPIE-MDIRKGSDDGVPVVI 255 (295)
Q Consensus 193 -----~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~~Ip~~-~~~~~a~~~g~~i~~ 255 (295)
++++|+|+|+++.+....+......-....+++.... ....++.||.. ..+..|+..|.|+++
T Consensus 237 ~~~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~~~~Pi~~ 316 (361)
T 3pg5_A 237 FDGEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQDVHAPIME 316 (361)
T ss_dssp SSSSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC------------------
T ss_pred ccccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHHHCCCeEE
Confidence 6779999999997644321000111122334444444 44567888854 457889999999999
Q ss_pred cCC-----------CChHHHHHHHHHHHHHHHHHHHHHh
Q 022525 256 SAP-----------DSTVSRAYGEVAVNVVNRLQELAKE 283 (295)
Q Consensus 256 ~~~-----------~s~~~~~~~~l~~~l~~~~~~~~~~ 283 (295)
..+ ...+.+.|.+||..|.++++.++-|
T Consensus 317 l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~~~~ 355 (361)
T 3pg5_A 317 LSSSDRVRGAQINQRNAYAEKINSVAANVYKALFPNELE 355 (361)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHCCCC--
T ss_pred CchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence 977 3478899999999999999877655
No 14
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.98 E-value=4.9e-32 Score=230.97 Aligned_cols=228 Identities=17% Similarity=0.084 Sum_probs=152.6
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCC-------Ccccccc-------Ccc
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ-------KPEVTKD-------MKM 94 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~-------~~~~~~~-------~~~ 94 (295)
+++++|+|+|+||||||||+|+|||.+|| +|+||++||+|+|++....+++... ..++.+. ...
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la--~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 102 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS--KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDST 102 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT--TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGG
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH--CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHh
Confidence 45899999999999999999999999999 5999999999999865544432211 1111111 111
Q ss_pred cccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC
Q 022525 95 VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ 174 (295)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~ 174 (295)
......++++++.+.......... .......+..+++.++ ..||+|||||||+++ ......+..||.+|+|+.++
T Consensus 103 i~~~~~~l~~lp~~~~~~~~~~~~--~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~ 177 (267)
T 3k9g_A 103 IINVDNNLDLIPSYLTLHNFSEDK--IEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE 177 (267)
T ss_dssp CEEEETTEEEECCCGGGGGTTTCC--CTTGGGHHHHHHHTTC-TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC
T ss_pred hccCCCCEEEEeCChHHHHHHHhh--hhhHHHHHHHHHHHhh-cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC
Confidence 111236777777664332222111 1112467888888888 899999999999997 55667778899999999999
Q ss_pred cchHHHHHHHHHHHhcCCCC-eeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCce
Q 022525 175 DVALIDARKGITMFSKVQVP-ILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPV 253 (295)
Q Consensus 175 ~~s~~~~~~~~~~l~~~~~~-~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i 253 (295)
..++..+.++++.+++.+.. .+++|+|++... .. .+...+.+ ++ +.++++.||+++.+.++...|.++
T Consensus 178 ~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~-~~--------~~~~~~~l-~~-~~~~~~~Ip~~~~~~~a~~~g~~~ 246 (267)
T 3k9g_A 178 KWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN-RT--------HKTLFEIL-KT-KDRFLGTISEREDLNRRIAENNNF 246 (267)
T ss_dssp TTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT-CS--------CCHHHHHH-TT-STTEEEEEEC--------------
T ss_pred hHHHHHHHHHHHHHHHHhccCCEEEEEecccCc-ch--------HHHHHHHH-hc-CcccceecCcHHHHHHHHHhcCCc
Confidence 99999999999999887543 356999999421 11 11223333 32 789999999999999999999987
Q ss_pred EEcCCCChHHHHHHHHHHHHHHHH
Q 022525 254 VISAPDSTVSRAYGEVAVNVVNRL 277 (295)
Q Consensus 254 ~~~~~~s~~~~~~~~l~~~l~~~~ 277 (295)
.. .+++.++|+++++++++++
T Consensus 247 ~~---~~~~~~~~~~i~~~l~~~l 267 (267)
T 3k9g_A 247 DL---NKDYIKEYENILEIFLKKI 267 (267)
T ss_dssp -----CCHHHHHHHHHHHHHHHHC
T ss_pred ch---hHHHHHHHHHHHHHHHhhC
Confidence 65 4789999999999998763
No 15
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.97 E-value=3.2e-32 Score=235.75 Aligned_cols=239 Identities=16% Similarity=0.169 Sum_probs=173.1
Q ss_pred CeEEEEee--CCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc---cccccCC-Ccccccc-------Cccccc
Q 022525 31 KDVIAVAS--GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP---MMMKIDQ-KPEVTKD-------MKMVPI 97 (295)
Q Consensus 31 ~~vI~i~s--~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~---~~~g~~~-~~~~~~~-------~~~~~~ 97 (295)
+++|+|+| .||||||||+|+|||..||+ +|+||++||+|+|++... ..++... ..++.+. ..+.+
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~-~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~- 111 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDK-LNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVH- 111 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEE-
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcc-
Confidence 57899998 89999999999999999999 999999999999985422 2234432 1222211 01111
Q ss_pred ccCCceeeccccccCCCCCCcc--CCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc
Q 022525 98 ENYGVKCMSMGFLVPSSSPVVW--RGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD 175 (295)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~ 175 (295)
...+++++|.+........+.. ........+..+++.++ ..||||||||||+++ ......+..+|.+|+|+.++.
T Consensus 112 ~~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~ 188 (298)
T 2oze_A 112 LTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPS--VYTNNAIVASDYVMIPLQAEE 188 (298)
T ss_dssp SSSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECGGG
T ss_pred cCCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCcc--HHHHHHHHHCCeEEEEecCcH
Confidence 1256666665532221100000 00112345888888888 899999999999988 455667778999999999999
Q ss_pred chHHHHHHHHHHHhc------CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCC--cEE-EeecCCcccccc
Q 022525 176 VALIDARKGITMFSK------VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGL--KVI-GEIPIEMDIRKG 246 (295)
Q Consensus 176 ~s~~~~~~~~~~l~~------~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~-~~Ip~~~~~~~a 246 (295)
.++..+.++++.+.+ .+.+++|+|+|+++... .......+++.+.++. +++ +.||++..+.++
T Consensus 189 ~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~Ip~~~~~~~a 260 (298)
T 2oze_A 189 ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS--------ATIKSNLEELYKQHKEDNLVFQNIIKRSNKVSTW 260 (298)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC--------HHHHHHHHHHHHHTTTTCCBCSSCEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc--------HHHHHHHHHHHHHhccccccccccccccHHHHHH
Confidence 999999988888765 36778999999997421 1122457778888886 454 599999999999
Q ss_pred ccCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 022525 247 SDDGVPVVISAPDSTVSRAYGEVAVNVVNRLQELAKE 283 (295)
Q Consensus 247 ~~~g~~i~~~~~~s~~~~~~~~l~~~l~~~~~~~~~~ 283 (295)
...|.|+++ ..+++++++|.+|+++|++++...+.+
T Consensus 261 ~~~G~~v~~-~~~~~~~~~~~~la~ei~~~~~~~~~~ 296 (298)
T 2oze_A 261 SKNGITEHK-GYDKKVLSMYKNVFFEMLERIIQLENE 296 (298)
T ss_dssp HHHCCCSSS-TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCChhh-hcChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999986 223468999999999999998766654
No 16
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.97 E-value=4.3e-32 Score=222.88 Aligned_cols=198 Identities=23% Similarity=0.190 Sum_probs=157.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccccc
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (295)
++|+|+|+|||+||||+|+|||..|++ +| +|++||+|+|+ ++..+++. ++ .|. .+++.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~-~g-~VlliD~D~q~-~~~~~~~~-~~---------l~~-----~vi~~---- 58 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLAL-QG-ETLLIDGDPNR-SATGWGKR-GS---------LPF-----KVVDE---- 58 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHT-TS-CEEEEEECTTC-HHHHHHHH-SC---------CSS-----EEEEG----
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHh-cC-CEEEEECCCCC-CHHHHhcC-CC---------CCc-----ceeCH----
Confidence 589999999999999999999999999 99 99999999997 55556654 11 111 22221
Q ss_pred CCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCC-CCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhc
Q 022525 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG-TGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSK 190 (295)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~-~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~ 190 (295)
. .++.+. ..||+|||||||+ .+ ......+..+|.+|+|+.++..++..+.++++.+++
T Consensus 59 --------------~----~l~~l~-~~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~ 117 (209)
T 3cwq_A 59 --------------R----QAAKYA-PKYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDALALDALMLTIETLQK 117 (209)
T ss_dssp --------------G----GHHHHG-GGCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred --------------H----HHHHhh-hcCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHh
Confidence 0 344455 7899999999999 66 455667779999999999999999999999999987
Q ss_pred C-CCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE-EeecCCccccccccCCCceEEc-CCCC-hHHHHH
Q 022525 191 V-QVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI-GEIPIEMDIRKGSDDGVPVVIS-APDS-TVSRAY 266 (295)
Q Consensus 191 ~-~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~Ip~~~~~~~a~~~g~~i~~~-~~~s-~~~~~~ 266 (295)
. +.+ +++|+|+++.... .. .....+..+++|.+++ +.||++..+.++...|.|+.++ .|++ +++++|
T Consensus 118 ~~~~~-~~vv~N~~~~~~~------~~--~~~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v~~~~~p~~~~~~~~~ 188 (209)
T 3cwq_A 118 LGNNR-FRILLTIIPPYPS------KD--GDEARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVVSEVSDSKAGIAWSDY 188 (209)
T ss_dssp TCSSS-EEEEECSBCCTTS------CH--HHHHHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCTTTSSSTTHHHHHHHH
T ss_pred ccCCC-EEEEEEecCCccc------hH--HHHHHHHHHHcCCchhhccCCCcHHHHHHHHcCCCHHHhCCccchhHHHHH
Confidence 4 444 7899999984310 00 1234455555898888 6999999999999999999999 8999 999999
Q ss_pred HHHHHHHHHHHHHHH
Q 022525 267 GEVAVNVVNRLQELA 281 (295)
Q Consensus 267 ~~l~~~l~~~~~~~~ 281 (295)
.+++++|++++..-+
T Consensus 189 ~~l~~el~~~~~~~~ 203 (209)
T 3cwq_A 189 KATGKEIVEEILTLE 203 (209)
T ss_dssp HHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999998765443
No 17
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.97 E-value=7.5e-32 Score=242.44 Aligned_cols=260 Identities=15% Similarity=0.112 Sum_probs=175.4
Q ss_pred hhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHH-----hCCCeEEEEEeCCCCCCcccccccCC
Q 022525 10 RLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALAS-----KCQLKVGLLDADVYGPSVPMMMKIDQ 84 (295)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~-----~~g~~VlliD~D~~~~~~~~~~g~~~ 84 (295)
.+..+++.+...... ....++++|+|+|+||||||||+|+|||+.||. ..|+||++||+|+|+ +++.++|..+
T Consensus 88 ~i~~~~~~~~~~~~~-~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~-~l~~~l~~~~ 165 (398)
T 3ez2_A 88 NIIDIYEHRGVPKYR-DRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS-SATMFLSHKH 165 (398)
T ss_dssp HHHHHHHHTTCCCGG-GTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC-HHHHHHSCHH
T ss_pred HHHHHHHHhcccccC-cCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhHHhCCcc
Confidence 344555444432211 234568999999999999999999999999994 169999999999986 7888887654
Q ss_pred Ccc-----cccc------------CcccccccCCceeeccccccCCC----CC----CccCCchHHHHHHHHHHhccCCC
Q 022525 85 KPE-----VTKD------------MKMVPIENYGVKCMSMGFLVPSS----SP----VVWRGPMVMSALRKMSREVDWGN 139 (295)
Q Consensus 85 ~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~l~~~~~~l~~~~ 139 (295)
..+ +.+. ..+.+....+++++|.+...... .. ...........+..+++.++ +.
T Consensus 166 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~ 244 (398)
T 3ez2_A 166 SIGIVNATSAQAMLQNVSREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SD 244 (398)
T ss_dssp HHSSCCSCHHHHHHHCCCHHHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TT
T ss_pred ccccccccHHHHHHhhccccccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-cc
Confidence 211 1110 11223334667777765321000 00 00001111234456777777 89
Q ss_pred ccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHH-------HHHHHhcC--CCCeeeEEeccccCCCCCC
Q 022525 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARK-------GITMFSKV--QVPILGLVENMSCFICPHC 210 (295)
Q Consensus 140 yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~-------~~~~l~~~--~~~~~~~ViN~~~~~~~~~ 210 (295)
||||||||||+++ ......+..||.+|+|+.|+..++..+.+ .++.+++. +.++.|+|.|+.+...
T Consensus 245 yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~--- 319 (398)
T 3ez2_A 245 YDFILVDSGPHLD--AFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSN--- 319 (398)
T ss_dssp CSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECS---
T ss_pred CCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCC---
Confidence 9999999999998 45667788999999999999886655444 34444443 4455666666554211
Q ss_pred CCCccccCCchhhHHHHHhCCcEE-EeecCCccccccccCCCceEEcCCCC---------hHHHHHHHHHHHHHHHHHHH
Q 022525 211 SEPSFIFGKGGTHRTAAEMGLKVI-GEIPIEMDIRKGSDDGVPVVISAPDS---------TVSRAYGEVAVNVVNRLQEL 280 (295)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~g~~~~-~~Ip~~~~~~~a~~~g~~i~~~~~~s---------~~~~~~~~l~~~l~~~~~~~ 280 (295)
........+++.+.+|.+++ +.||++..+.++...|.|++++.|.+ .+.+++.+++++|.++++.-
T Consensus 320 ----~~~~~~~~~~l~~~~g~~vl~~~IP~~~~i~~a~~~G~~v~~~~p~s~~~~~~~~~~a~~~~~~l~~~i~~~l~~~ 395 (398)
T 3ez2_A 320 ----KADHKYCHSLAKEVFGGDMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRIEFI 395 (398)
T ss_dssp ----CHHHHHHHHHHHHHHGGGBCSCCEECCHHHHHHHHTTCCTTTSCTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----chhHHHHHHHHHHHhcccccceeccchHHHHHHHhcCCCceeeccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122446777888998888 79999999999999999999998863 56778889999998888764
Q ss_pred H
Q 022525 281 A 281 (295)
Q Consensus 281 ~ 281 (295)
+
T Consensus 396 ~ 396 (398)
T 3ez2_A 396 R 396 (398)
T ss_dssp H
T ss_pred h
Confidence 3
No 18
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.97 E-value=5.6e-31 Score=237.10 Aligned_cols=240 Identities=16% Similarity=0.119 Sum_probs=132.1
Q ss_pred cCCCCeEEEEeeCCCCCcHHHHHHHHHHHHH------HhCCCeEEEEEeCCCCCCcccccccCCCcccccc---------
Q 022525 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALA------SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD--------- 91 (295)
Q Consensus 27 ~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la------~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~--------- 91 (295)
...++++|+|+|+||||||||+|+|||++|| + .|+||++||+|+|+ +++.+||.....+....
T Consensus 107 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~-~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~ 184 (403)
T 3ez9_A 107 IHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLR-HDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNN 184 (403)
T ss_dssp HSCSCEEEEECCC--------CHHHHHHHHHSCGGGGG-GCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHT
T ss_pred CCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhc-CCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhc
Confidence 3456899999999999999999999999999 6 79999999999987 78888887653221110
Q ss_pred --------CcccccccCCceeeccccccCCC----CC----CccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccc
Q 022525 92 --------MKMVPIENYGVKCMSMGFLVPSS----SP----VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ 155 (295)
Q Consensus 92 --------~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~ 155 (295)
..+.+....+++++|.+...... .. ...........++.+++.++ +.||||||||||+++ .
T Consensus 185 ~~~~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~--~ 261 (403)
T 3ez9_A 185 LDAETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLD--P 261 (403)
T ss_dssp CCHHHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCS--H
T ss_pred ccccccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCcc--H
Confidence 11222334567777665321000 00 00000111223456677777 899999999999998 5
Q ss_pred hhhhhhccCceEEEeeCCCcchHHHHHH-------HHHHHhcCC--CCeeeE--EeccccCCCCCCCCCccccCCchhhH
Q 022525 156 LTTTQTLQLSGALIVSTPQDVALIDARK-------GITMFSKVQ--VPILGL--VENMSCFICPHCSEPSFIFGKGGTHR 224 (295)
Q Consensus 156 ~~~~~l~~ad~viiv~~~~~~s~~~~~~-------~~~~l~~~~--~~~~~~--ViN~~~~~~~~~~~~~~~~~~~~~~~ 224 (295)
.....+..||.+|+|+.|+..++..+.+ .++.+++.+ .++.|+ ++|+++. . .......++
T Consensus 262 ~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~-------~--~~~~~~~~~ 332 (403)
T 3ez9_A 262 FLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG-------K--RDHETSHSL 332 (403)
T ss_dssp HHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC----------C--HHHHHHHHH
T ss_pred HHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC-------c--hhHHHHHHH
Confidence 5667788999999999999887655443 444444443 344444 4555431 1 111234567
Q ss_pred HHHHhCCcEE-EeecCCccccccccCCCceEEcCCCC---------hHHHHHHHHHHHHHHHHHHH
Q 022525 225 TAAEMGLKVI-GEIPIEMDIRKGSDDGVPVVISAPDS---------TVSRAYGEVAVNVVNRLQEL 280 (295)
Q Consensus 225 ~~~~~g~~~~-~~Ip~~~~~~~a~~~g~~i~~~~~~s---------~~~~~~~~l~~~l~~~~~~~ 280 (295)
+.+.+|.+++ +.||+++.+.++...|.|++++.|.+ .+.++|.+++++|.++++..
T Consensus 333 ~~~~~g~~vl~~~IP~~~~v~~a~~~G~~v~~~~p~s~~~~~~~~~~~~~~~~~la~~i~~~i~~~ 398 (403)
T 3ez9_A 333 AREVYASNILDSSLPRLDGFERCGESFDTVISANPQSYPGSAEALKKARTEAERFTKAVFDRIEFV 398 (403)
T ss_dssp HHHHHTTSEECCC-----------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHhhhceeCCchHHHHHHHhcCCCceecCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778999988 79999999999999999999988753 46678889999998888764
No 19
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.97 E-value=1.4e-31 Score=230.22 Aligned_cols=228 Identities=15% Similarity=0.086 Sum_probs=159.3
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCc-eeeccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGV-KCMSMG 108 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 108 (295)
|+++|+|+|.||||||||+|+|||..||+ .|++|++||+|+.+++++.+++.... +.+... .+ ...++ ++++.+
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~q~~l~~~l~~~~~--~~~~~~-~~-~~~~l~~vl~~~ 77 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLY-GGAKVAVIDLDLRQRTSARFFENRRA--WLDNKK-IE-LPEPLALNLSDN 77 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHH-TTCCEEEEECCTTTCHHHHHHHHHHH--HHHHHT-CC-CCCCEEECSSSC
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCHHHHhCCChh--HhHhcc-cc-CCCchheEeeCC
Confidence 46899999999999999999999999999 99999999999955688877775431 100000 00 01233 444431
Q ss_pred cccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHH-
Q 022525 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITM- 187 (295)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~- 187 (295)
... .....+......+..+++.++ ..||||||||||+++ ......+..||.+|+|+.++..++..+.++++.
T Consensus 78 ~~~----~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~ 150 (286)
T 2xj4_A 78 DVA----LAERPEEEQVAGFEAAFARAM-AECDFILIDTPGGDS--AITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVT 150 (286)
T ss_dssp HHH----HTTSCHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCC--HHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTT
T ss_pred CCC----CcChhhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCcc--HHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHh
Confidence 100 001112233567888888888 899999999999986 556677889999999999998887665443333
Q ss_pred ------------H---h-------cCC-CCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcccc
Q 022525 188 ------------F---S-------KVQ-VPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIR 244 (295)
Q Consensus 188 ------------l---~-------~~~-~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~ 244 (295)
+ + ..+ .+ +++|+|+++.... .....-.+.+++.++++|..+.+.||++..+.
T Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~vV~N~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~~~Ip~~~~~~ 225 (286)
T 2xj4_A 151 LELTKPSLYSLTVWEGRKQRALSGQRQAMD-WVVLRNRLATTEA----RNRKRLEDRLNALAKRVGFRIGPGLRDRVIYR 225 (286)
T ss_dssp CCEEEECHHHHHHHHHHHHHHHHCSSCCCE-EEEEEECCTTCCG----GGHHHHHHHHHHHHHHHCCEEEECCCCCHHHH
T ss_pred hhccccchhhhhhhcchhhhhhccCCcccc-EEEEEeeecCCCc----chhHHHHHHHHHHHHHcCCccCCCCCchHHHH
Confidence 3 2 223 33 5799999974210 00000001122333348887778999999999
Q ss_pred ccccCCCceEEcCC----------CChHHHHHHHHHHHHH
Q 022525 245 KGSDDGVPVVISAP----------DSTVSRAYGEVAVNVV 274 (295)
Q Consensus 245 ~a~~~g~~i~~~~~----------~s~~~~~~~~l~~~l~ 274 (295)
++...|+|++++.| +++++++|.+|+++|.
T Consensus 226 ~a~~~g~~v~~~~~~~~~~~~~~~~s~~~~~~~~la~~l~ 265 (286)
T 2xj4_A 226 ELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMHSLG 265 (286)
T ss_dssp HHGGGTCCGGGCBTTBCCSCCCSTTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCHHHhCccccccccccccchHHHHHHHHHHHhC
Confidence 99999999999998 8899999999999985
No 20
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.97 E-value=3.9e-30 Score=220.40 Aligned_cols=190 Identities=15% Similarity=0.197 Sum_probs=154.0
Q ss_pred hhhhhhhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCC
Q 022525 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (295)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~ 84 (295)
+.+.|+++.||+++.+.... ..+++|+|+|+|||+||||+|+|||..||+ .|+||++||+|++.++++.+|+..+
T Consensus 70 ~~~~Ea~r~lrt~l~~~~~~----~~~kvI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLID~D~~~~~l~~~~~~~~ 144 (286)
T 3la6_A 70 DLAIEAIRSLRTSLHFAMMQ----AQNNVLMMTGVSPSIGMTFVCANLAAVISQ-TNKRVLLIDCDMRKGYTHELLGTNN 144 (286)
T ss_dssp CHHHHHHHHHHHHHHHHSTT----TTCCEEEEEESSSSSSHHHHHHHHHHHHHT-TTCCEEEEECCTTTCCHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhhhccC----CCCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCCEEEEeccCCCCCHHHHhCCCC
Confidence 34679999999999986533 336999999999999999999999999999 9999999999999999999999988
Q ss_pred Ccccccc--------CcccccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch
Q 022525 85 KPEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL 156 (295)
Q Consensus 85 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~ 156 (295)
..++.+. ..+.+....++++++.+...+... +......+..+++.++ ..||+|||||||.+... .
T Consensus 145 ~~gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~-----ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~-d 217 (286)
T 3la6_A 145 VNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPS-----ELLMSERFAELVNWAS-KNYDLVLIDTPPILAVT-D 217 (286)
T ss_dssp TTCHHHHHHTSSCTTTTCEECSSTTEEEECCCSCCSCHH-----HHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCT-H
T ss_pred CCCHHHHccCCCCHHHheeccCCCCEEEEeCCCCCCCHH-----HHhchHHHHHHHHHHH-hCCCEEEEcCCCCcchH-H
Confidence 7766543 122333446778887765433221 2223478889999998 89999999999987642 2
Q ss_pred hhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 157 TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 157 ~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
.......+|.+|+|+.++..+...+.+.++.+++.+.+++|+|+|+++..
T Consensus 218 a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 218 AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 23344568999999999999999999999999999999999999999853
No 21
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.96 E-value=1.2e-29 Score=216.12 Aligned_cols=189 Identities=21% Similarity=0.288 Sum_probs=150.5
Q ss_pred hhhhhhhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCC
Q 022525 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (295)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~ 84 (295)
+.+.|+++.||+++.+.... ..+++|+|+|.|||+||||+|+|||..||+ .|+||++||+|++.|+++.+|+..+
T Consensus 60 ~~~~Ea~r~lrt~l~~~~~~----~~~kvI~vts~kgG~GKTt~a~nLA~~lA~-~G~rVLLID~D~~~~~l~~~~~~~~ 134 (271)
T 3bfv_A 60 SPISEKFRGIRSNIMFANPD----SAVQSIVITSEAPGAGKSTIAANLAVAYAQ-AGYKTLIVDGDMRKPTQHYIFNLPN 134 (271)
T ss_dssp SHHHHHHHHHHHHHHHSSTT----CCCCEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCSSSCCHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHhhccC----CCCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCccHHHHcCCCC
Confidence 45679999999999987532 337999999999999999999999999999 9999999999999999999999887
Q ss_pred CccccccC--------cccccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch
Q 022525 85 KPEVTKDM--------KMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL 156 (295)
Q Consensus 85 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~ 156 (295)
..++.+.. .+.+....++++++.+...+... +......+..+++.++ ..||+|||||||.+... .
T Consensus 135 ~~gl~~~L~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~-----ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~-d 207 (271)
T 3bfv_A 135 NEGLSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPS-----ELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVT-D 207 (271)
T ss_dssp SSSHHHHHTTSSCHHHHEEECSSTTEEEECCCSCCSCHH-----HHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCS-H
T ss_pred CCCHHHHhCCCCCHHHcEEeCCCCCEEEEECCCCCCCHH-----HHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHH-H
Confidence 76655431 12222336777777664332221 1122467888888888 89999999999987632 2
Q ss_pred hhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 157 TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 157 ~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
....+..+|.+|+|+.++..+...+.+.++.+++.+.+++|+|+|+++.
T Consensus 208 ~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 208 AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 2233346899999999999999999999999999999999999999984
No 22
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.96 E-value=9.4e-29 Score=213.46 Aligned_cols=190 Identities=14% Similarity=0.205 Sum_probs=150.4
Q ss_pred hhhhhhhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCC
Q 022525 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (295)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~ 84 (295)
+.+.|+++.||+++.+.... ..+++|+|+|.|||+||||+|+|||..||+ .|+||++||+|++.++++.+|+..+
T Consensus 82 ~~~~Ea~r~lrt~l~~~~~~----~~~kvI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLID~D~r~~~l~~~~~~~~ 156 (299)
T 3cio_A 82 DSAVEAVRALRTSLHFAMME----TENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRGYSHNLFTVSN 156 (299)
T ss_dssp CHHHHHHHHHHHHHHHHTSS----CSCCEEEEEESSSSSCHHHHHHHHHHHHHH-TTCCEEEEECCTTTCCHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHhccC----CCCeEEEEECCCCCCChHHHHHHHHHHHHh-CCCcEEEEECCCCCccHHHHcCCCC
Confidence 34568999999999876532 236999999999999999999999999999 9999999999999999999999887
Q ss_pred CccccccC--------cccccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch
Q 022525 85 KPEVTKDM--------KMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL 156 (295)
Q Consensus 85 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~ 156 (295)
..++.+.. .+.+....++++++.+...+... +......+..+++.++ ..||+|||||||.+....
T Consensus 157 ~~gl~~~L~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~-----ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d- 229 (299)
T 3cio_A 157 EHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPS-----ELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSD- 229 (299)
T ss_dssp SSSHHHHHTTSSCHHHHCEEETTTTEEEECCCSCCSCHH-----HHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTH-
T ss_pred CCCHHHHCcCCCCHHHhhhccCCCCEEEEECCCCCCCHH-----HHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHH-
Confidence 76665431 12223346778887764333221 1123467888888888 899999999999876322
Q ss_pred hhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 157 TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 157 ~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
.......+|.+|+|+.++..+...+...++.+++.+.+++|+|+|+++..
T Consensus 230 ~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 230 AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 22333469999999999999999999999999999999999999999853
No 23
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.94 E-value=1.2e-26 Score=206.59 Aligned_cols=197 Identities=15% Similarity=0.208 Sum_probs=137.8
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcc-------------
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKM------------- 94 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~------------- 94 (295)
...+++|+|+|+||||||||+|+|||..||+ +|+||++||+| ..++++.++|..+..++.+....
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~-~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~ 217 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHAN-MGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLE 217 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHH-HTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHh-CCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHH
Confidence 3458999999999999999999999999999 89999999999 66799999999887666543111
Q ss_pred --cccccCCceeeccccccCCCCCCccCCchHHHHHHHHHHhcc-CCCccEEEEcCCCCCCccchhhhhhccCceEEEee
Q 022525 95 --VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD-WGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVS 171 (295)
Q Consensus 95 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~ 171 (295)
......++++++.+..... ........+..+++.++ +..||+|||||||+.+. .....+..||.+++|+
T Consensus 218 ~~i~~~~~~l~~l~~~~~~~~------~~~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~--~~~~~l~~aD~vivv~ 289 (373)
T 3fkq_A 218 SCIKQSQEGVSYFSSTKVALD------ILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLEI--EKLKLLSKAWRIIVVN 289 (373)
T ss_dssp HTCEECTTSCEECCCCSSGGG------GGGCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCH--HHHHHHTTCSEEEEEE
T ss_pred HHhhcCCCCEEEecCCCChHh------HHhCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCH--HHHHHHHHCCEEEEEe
Confidence 1112355666655431111 11123455556665554 25899999999999884 4556677999999999
Q ss_pred CCCcch---HHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccc
Q 022525 172 TPQDVA---LIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRK 245 (295)
Q Consensus 172 ~~~~~s---~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~ 245 (295)
.|+..+ +..+.+.++.+... .+ +++|.|+........ ...+++++..++++++.||+++....
T Consensus 290 ~~~~~s~~~l~~~~~~l~~l~~~-~~-~~vv~N~~~v~~~~~---------~~~~~fl~~~~l~~lG~IP~D~~~~~ 355 (373)
T 3fkq_A 290 DGSQLSNYKFMRAYESVVLLEQN-DD-INIIRNMNMIYNKFS---------NKNSEMLSNISIKTIGGAPRYEHATV 355 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTS-TT-CCCGGGEEEEECSCC---------TTTCCCCCSCSCEEEEECCCCTTCCH
T ss_pred cCCchHHHHHHHHHHHHHHhccc-CC-cEEEehhHHHHHHHH---------HHHHHHhhcCCccceeecCCCCCcCH
Confidence 999988 56666666666542 22 556666653221110 12334444568999999999988643
No 24
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.93 E-value=5.7e-27 Score=206.58 Aligned_cols=231 Identities=18% Similarity=0.206 Sum_probs=143.1
Q ss_pred hhhhhhhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCC
Q 022525 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (295)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~ 84 (295)
+.+.|.++.+|+++.+.... ..+++|+|+|+||||||||+|+|||..+|+ .|+||++||+|++ ++++.+||.+.
T Consensus 3 s~~~E~~r~lrt~~~~~~~~----~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~-~G~rVLlvD~D~~-~~l~~~l~~~~ 76 (349)
T 3ug7_A 3 SKIKDSINSLRGITEKKLEK----KDGTKYIMFGGKGGVGKTTMSAATGVYLAE-KGLKVVIVSTDPA-HSLRDIFEQEF 76 (349)
T ss_dssp -------CTTHHHHHHHHHS----SCSCEEEEEECSSSTTHHHHHHHHHHHHHH-SSCCEEEEECCTT-CHHHHHHCSCC
T ss_pred HHHHHHHHHHhhhHHHhhcc----cCCCEEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEeCCCC-CCHHHHhCCCC
Confidence 57789999999999876533 237999999999999999999999999999 9999999999996 58889998864
Q ss_pred CccccccC---c-----ccccc----------cCCceeeccccccCCC--CCCccCCchHHHHHHHHHHhccCCCccEEE
Q 022525 85 KPEVTKDM---K-----MVPIE----------NYGVKCMSMGFLVPSS--SPVVWRGPMVMSALRKMSREVDWGNLDILV 144 (295)
Q Consensus 85 ~~~~~~~~---~-----~~~~~----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~~yD~ii 144 (295)
........ . ..+.. ......++.+...... .....++......+..+.+.++...||+||
T Consensus 77 ~~~~~~v~g~~~l~~~~id~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VI 156 (349)
T 3ug7_A 77 GHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVI 156 (349)
T ss_dssp CSSCEECTTCSSEEEEECCHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEE
T ss_pred CcCccccccccceeeeccCHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 33211110 0 00000 0000000000000000 000001111112222333333337899999
Q ss_pred EcCCCCCCccc-hhhh----------------------------------------------------------hhc--c
Q 022525 145 IDMPPGTGDAQ-LTTT----------------------------------------------------------QTL--Q 163 (295)
Q Consensus 145 iD~~~~~~~~~-~~~~----------------------------------------------------------~l~--~ 163 (295)
|||||+..... +... .+. .
T Consensus 157 iDtpPt~~tlrlL~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~ 236 (349)
T 3ug7_A 157 FDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPE 236 (349)
T ss_dssp ECSCCCTTGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ECCCCChHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999653210 0000 000 1
Q ss_pred CceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCC---CCCCCccccCCchhhHHHHHhCCcEEEeecCC
Q 022525 164 LSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICP---HCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIE 240 (295)
Q Consensus 164 ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~ 240 (295)
.+.+++|+.|+..++.++.+.++.+++.++++.|+|+|++..... .+....... ....+++.+.++...++.||..
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~-~~~l~~i~~~~~~~~l~~iPl~ 315 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQ-LKRLEMIKEKFGDKVIAYVPLL 315 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHH-HHHHHHHHHHSTTSEEEEEECC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHH-HHHHHHHHHHcCCCcEEEecCC
Confidence 478999999999999999999999999999999999999975421 111111111 3457888889999999999987
Q ss_pred cc
Q 022525 241 MD 242 (295)
Q Consensus 241 ~~ 242 (295)
+.
T Consensus 316 ~~ 317 (349)
T 3ug7_A 316 RT 317 (349)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 25
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.91 E-value=2.1e-24 Score=188.53 Aligned_cols=209 Identities=17% Similarity=0.260 Sum_probs=128.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCccc------c--------
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMV------P-------- 96 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~------~-------- 96 (295)
+++|+|+|+||||||||+|+|||..+|+ .|+||++||+|+ .++++.+||.+............ +
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~-~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~~ 90 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMAR-SGKKTLVISTDP-AHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQ 90 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEECCS-SCCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHH-CCCcEEEEeCCC-CcCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHHH
Confidence 4899999999999999999999999999 999999999999 46889999886433222110000 0
Q ss_pred --cccCCceeecccc-ccCCCCCC--ccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc------c-h--------
Q 022525 97 --IENYGVKCMSMGF-LVPSSSPV--VWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA------Q-L-------- 156 (295)
Q Consensus 97 --~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~------~-~-------- 156 (295)
........++.+. ........ ..+.......+..+.+.+.+..||+|||||||..... . +
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~l~ 170 (324)
T 3zq6_A 91 AKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMI 170 (324)
T ss_dssp HHC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHHHHHHHHHHHH
Confidence 0000001111110 00000000 0111111222333333322378999999999943100 0 0
Q ss_pred ------------------------------------------hhhhhcc--CceEEEeeCCCcchHHHHHHHHHHHhcCC
Q 022525 157 ------------------------------------------TTTQTLQ--LSGALIVSTPQDVALIDARKGITMFSKVQ 192 (295)
Q Consensus 157 ------------------------------------------~~~~l~~--ad~viiv~~~~~~s~~~~~~~~~~l~~~~ 192 (295)
....+.. .+.+++|+.|+..++.++.+.++.+++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~~g 250 (324)
T 3zq6_A 171 KIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYS 250 (324)
T ss_dssp HHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHHCC
Confidence 0001111 35899999999999999999999999999
Q ss_pred CCeeeEEeccccCCCC---CCCCCccccCCchhhHHHHHhCCcEEEeecCCcc
Q 022525 193 VPILGLVENMSCFICP---HCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMD 242 (295)
Q Consensus 193 ~~~~~~ViN~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~ 242 (295)
+++.|+|+|++..... .+....... ...++++.+.++...+..||..+.
T Consensus 251 i~v~gvV~N~~~~~~~~~~~~~~~~~~~-~~~l~~i~~~~~~~~~~~iPl~~~ 302 (324)
T 3zq6_A 251 IHADGVIVNQVLPEESDCEFCNARRKLQ-QERLKQIREKFSDKVVAEVPLLKK 302 (324)
T ss_dssp CCEEEEEEEEECCSCCCSHHHHHHHHHH-HHHHHHHHHHTTTSEEEEEECCSS
T ss_pred CCccEEEEcCCccccCCChHHHHHHHHH-HHHHHHHHHHcCCCcEEEecCCCC
Confidence 9999999999975421 111111111 234778888888888889997654
No 26
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.88 E-value=1.9e-23 Score=182.69 Aligned_cols=221 Identities=14% Similarity=0.092 Sum_probs=129.6
Q ss_pred hhhccccccccCCCccccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCc---
Q 022525 10 RLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--- 86 (295)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~--- 86 (295)
.++.+|+++.+... ...++|+|+|+||||||||+|+|||..||+ .|+||++||+|++ ++++.+||.....
T Consensus 2 ~~r~lr~~l~~~~~-----~~~~~i~v~sgkGGvGKTTva~~LA~~lA~-~G~rVllvD~D~~-~~l~~~l~~~~~~~~~ 74 (329)
T 2woo_A 2 SFDPLPGTLENLLE-----QTSLKWIFVGGKGGVGKTTTSCSLAIQMSK-VRSSVLLISTDPA-HNLSDAFGTKFGKDAR 74 (329)
T ss_dssp -----CCSTHHHHH-----CTTCCEEEEECSSSSSHHHHHHHHHHHHHT-SSSCEEEEECCTT-CHHHHHHSSCCCSSCE
T ss_pred CcchhhccHHHHhc-----CCCCEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEECCCC-cCHHHHhCCcCCCCCe
Confidence 45677777765422 225889999999999999999999999999 9999999999999 7888888875321
Q ss_pred ---cccccCc--cccc---ccC--C-----ce-eeccccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCC
Q 022525 87 ---EVTKDMK--MVPI---ENY--G-----VK-CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG 150 (295)
Q Consensus 87 ---~~~~~~~--~~~~---~~~--~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~ 150 (295)
++.+... ..+. ... . +. +++.. +. ......++......+..+.+.+.+..||+|||||||.
T Consensus 75 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~--~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPt 151 (329)
T 2woo_A 75 KVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGM-MQ--DLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPT 151 (329)
T ss_dssp ECTTCSSEEEEECCHHHHHHHHHHTC--------CCHH-HH--HHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSS
T ss_pred eccCCCCeeEEecCHHHHHHHHHHHHhhhhHHHHhhHH-HH--HHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCc
Confidence 1111100 0000 000 0 00 01100 00 0000112222223455555555536899999999993
Q ss_pred -CCccchhh----------------------hh-------------------------------hc--cCceEEEeeCCC
Q 022525 151 -TGDAQLTT----------------------TQ-------------------------------TL--QLSGALIVSTPQ 174 (295)
Q Consensus 151 -~~~~~~~~----------------------~~-------------------------------l~--~ad~viiv~~~~ 174 (295)
..-..+.. .. +. ..+.+++|+.|+
T Consensus 152 g~~l~lL~~p~~~~~~l~~l~~~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe 231 (329)
T 2woo_A 152 GHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISE 231 (329)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHTSCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Confidence 21000000 00 00 124799999999
Q ss_pred cchHHHHHHHHHHHhcCCCCeeeEEeccccCCCC-CCCCC--ccccCCchhhHHHHHhCCcEEEeecCC
Q 022525 175 DVALIDARKGITMFSKVQVPILGLVENMSCFICP-HCSEP--SFIFGKGGTHRTAAEMGLKVIGEIPIE 240 (295)
Q Consensus 175 ~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~g~~~~~~Ip~~ 240 (295)
..++.++.+.++.+++.++++.++|+|++..... .+... ....+...++++.+.++...+..||.-
T Consensus 232 ~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~vP~~ 300 (329)
T 2woo_A 232 FLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHVVKVPQV 300 (329)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred cchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 9999999999999999999999999999973111 00000 000112335567777754444677754
No 27
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.88 E-value=5.4e-23 Score=181.26 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=112.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH--HhCCCeEEEEEeCCCCCCcccccccCCCcc------ccccCc--ccccc--
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYGPSVPMMMKIDQKPE------VTKDMK--MVPIE-- 98 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la--~~~g~~VlliD~D~~~~~~~~~~g~~~~~~------~~~~~~--~~~~~-- 98 (295)
.++|+|+|+||||||||+|+|||..|| + .|+||++||+|++ ++++.+||.+.... +.+... +.+..
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~-~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~~l 94 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQ-PNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAAL 94 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHC-TTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhc-CCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHHHH
Confidence 589999999999999999999999999 8 9999999999996 79999999865321 111100 00000
Q ss_pred -c------------------CCceeeccccccCCCCCCccCCchHHHHHHHHHHhccC------CCccEEEEcCCC-CC-
Q 022525 99 -N------------------YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW------GNLDILVIDMPP-GT- 151 (295)
Q Consensus 99 -~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~------~~yD~iiiD~~~-~~- 151 (295)
. .++..++.+... .......++......+..+++.+++ ..||+||||||| |.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~-~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpPtG~t 173 (354)
T 2woj_A 95 KDMNDMAVSRANNNGSDGQGDDLGSLLQGGAL-ADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHT 173 (354)
T ss_dssp HHHHTC--------------------CCSSHH-HHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCCHHHH
T ss_pred HHHHHHHHhhcccccccchhhhhhhccchhHH-HHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCCchHH
Confidence 0 012222110000 0000001222223556667766652 179999999999 43
Q ss_pred --------------------Cccchhh---------------------------hhhc--cCceEEEeeCCCcchHHHHH
Q 022525 152 --------------------GDAQLTT---------------------------TQTL--QLSGALIVSTPQDVALIDAR 182 (295)
Q Consensus 152 --------------------~~~~~~~---------------------------~~l~--~ad~viiv~~~~~~s~~~~~ 182 (295)
....... ..+. .+|.+++|+.|+..++.++.
T Consensus 174 LrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea~ 253 (354)
T 2woj_A 174 LRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETE 253 (354)
T ss_dssp HHHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHHH
Confidence 0000000 0011 57899999999999999999
Q ss_pred HHHHHHhcCCCCeeeEEecccc
Q 022525 183 KGITMFSKVQVPILGLVENMSC 204 (295)
Q Consensus 183 ~~~~~l~~~~~~~~~~ViN~~~ 204 (295)
+.++.+++.+.+..++|+|++.
T Consensus 254 r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 254 RLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCCEEEEecCC
Confidence 9999999999999999999997
No 28
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.88 E-value=3.6e-22 Score=165.34 Aligned_cols=195 Identities=12% Similarity=0.067 Sum_probs=122.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccc-cccCCC-cc-ccccCccc-ccccCCceeecc
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMM-MKIDQK-PE-VTKDMKMV-PIENYGVKCMSM 107 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~-~g~~~~-~~-~~~~~~~~-~~~~~~~~~~~~ 107 (295)
|+|+|+|.|||+||||+|+|||.+|++ +|+||+++| +|....... .+.... .. +....... +........+..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~-~G~rVll~d--p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKA-AGYRTAGYK--PVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAE 78 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHH-TTCCEEEEC--SEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEESS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEc--ceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEeCC
Confidence 789999999999999999999999999 999999974 554221100 000000 00 00000000 000000001100
Q ss_pred ccccCCCCCC---ccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccc---hhhhhhc-c-CceEEEeeCCCcchHH
Q 022525 108 GFLVPSSSPV---VWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ---LTTTQTL-Q-LSGALIVSTPQDVALI 179 (295)
Q Consensus 108 ~~~~~~~~~~---~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~---~~~~~l~-~-ad~viiv~~~~~~s~~ 179 (295)
+..... ..........+.+.++.++ +.||||||||||+++... .....+. . .+.+++|+.+...++.
T Consensus 79 ----~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~ 153 (224)
T 1byi_A 79 ----PTSPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCIN 153 (224)
T ss_dssp ----CSCHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHH
T ss_pred ----CCCHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHH
Confidence 000000 0000123567888888888 899999999999987422 1111111 1 1248888888888999
Q ss_pred HHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcc
Q 022525 180 DARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMD 242 (295)
Q Consensus 180 ~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~ 242 (295)
.+...++.+++.+.++.|+|+|+++... .......+.+.+.++.++++.||+++.
T Consensus 154 ~~~~~i~~l~~~~~~i~gvvlN~~~~~~--------~~~~~~~~~l~~~~~~~vl~~Ip~~~~ 208 (224)
T 1byi_A 154 HAMLTAQVIQHAGLTLAGWVANDVTPPG--------KRHAEYMTTLTRMIPAPLLGEIPWLAE 208 (224)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCSSCC--------TTHHHHHHHHHHHSSSCEEEEECCCTT
T ss_pred HHHHHHHHHHHCCCcEEEEEEeCCCCch--------hhHHHHHHHHHHHcCCCEEEECCCCcC
Confidence 9999999998888999999999997421 111244667777889999999999884
No 29
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.87 E-value=1.1e-22 Score=177.43 Aligned_cols=171 Identities=20% Similarity=0.182 Sum_probs=105.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccC--------cccccc---c
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM--------KMVPIE---N 99 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~---~ 99 (295)
+++|.|+|+||||||||+|+|||..||+ .|+||++||+|++. +++.+||........... ...+.. .
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~-~g~~vllid~D~~~-~l~~~l~~~~~~~~~~v~~~~~L~~~~id~~~~~~~ 92 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAK-VRRSVLLLSTDPAH-NLSDAFSQKFGKEARLVEGFDNLYAMEIDPNGSMQD 92 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTT-SSSCEEEEECCSSC-HHHHHHTSCCCSSCEECTTCSSEEEEECCC------
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHh-CCCcEEEEECCCCC-ChhHHhccccCCCceeecCCCCceeeecCHHHHHHH
Confidence 4677799999999999999999999999 99999999999875 777788764322111110 000000 0
Q ss_pred CCceeecc-----ccccCCCCCC--ccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc-chh--------------
Q 022525 100 YGVKCMSM-----GFLVPSSSPV--VWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA-QLT-------------- 157 (295)
Q Consensus 100 ~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~-~~~-------------- 157 (295)
........ ..+ ...... ..++......+..+.+.+.+..||+|||||||..... .+.
T Consensus 93 ~~~~~~~~~~~~~~~l-~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~~l~~~l~~~~~ 171 (334)
T 3iqw_A 93 LLAGQTGDGDAGMGGV-GVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQ 171 (334)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHHHC---------
T ss_pred HHHHhhcccccccccc-hhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000 000000 0112212222333333333478999999999921100 000
Q ss_pred ------------------------------------------hhhhc--cCceEEEeeCCCcchHHHHHHHHHHHhcCCC
Q 022525 158 ------------------------------------------TTQTL--QLSGALIVSTPQDVALIDARKGITMFSKVQV 193 (295)
Q Consensus 158 ------------------------------------------~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~ 193 (295)
...+. ..+.+++|+.|+..++.++.+.++.+++.++
T Consensus 172 ~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~~L~~~gi 251 (334)
T 3iqw_A 172 LSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQELANYGI 251 (334)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHHHHHHHHCCC
Confidence 00011 1357999999999999999999999999999
Q ss_pred CeeeEEecccc
Q 022525 194 PILGLVENMSC 204 (295)
Q Consensus 194 ~~~~~ViN~~~ 204 (295)
++.|+|+|++.
T Consensus 252 ~v~gvVvN~~~ 262 (334)
T 3iqw_A 252 DTHCIVVNQLL 262 (334)
T ss_dssp CEEEEEEEEEC
T ss_pred CccEEEECCCc
Confidence 99999999986
No 30
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.85 E-value=4e-22 Score=174.74 Aligned_cols=208 Identities=15% Similarity=0.151 Sum_probs=111.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH--HhCCCeEEEEEeCCCCCCcccccccCCCccccccC--------cccccc--
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM--------KMVPIE-- 98 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la--~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~-- 98 (295)
.+.|+|+|+||||||||+|+|||..+| + .|++|++||+|++ ++++.+||.+......... .+.+..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~-~g~~vllid~D~~-~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~~ 94 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQ-PNEQFLLISTDPA-HNLSDAFCQKFGKDARKVEGLPNLSCMEIDPEAAM 94 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHC-TTSCEEEEECCSS-CHHHHHHTSCCCSSCEEETTEEEEEEEECCC----
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhc-CCCeEEEEECCCC-CChHHHhccccCCCceeccCCCCceEEeeCHHHHH
Confidence 456777788999999999999999999 8 9999999999976 4788888865322211110 000000
Q ss_pred -cCCceee--------ccccccCCCCCCccCCchHHHHHHHHHHhccC------------CCccEEEEcCCCCCCcc---
Q 022525 99 -NYGVKCM--------SMGFLVPSSSPVVWRGPMVMSALRKMSREVDW------------GNLDILVIDMPPGTGDA--- 154 (295)
Q Consensus 99 -~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~------------~~yD~iiiD~~~~~~~~--- 154 (295)
.....+. +...+.. ......++......+.++++.+.+ ..||+|||||||.....
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL 173 (348)
T 3io3_A 95 SDLQQQASQYNNDPNDPLKSMMS-DMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFL 173 (348)
T ss_dssp --------------------------------------------------------------CCEEEEECSSHHHHHHHT
T ss_pred HHHHHHHHhhcccccccHhHHhH-HhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCchHHHHHH
Confidence 0000000 0000000 000000111111233444444441 27999999999932100
Q ss_pred -------c-hh--------------------------------------hhhhc--cCceEEEeeCCCcchHHHHHHHHH
Q 022525 155 -------Q-LT--------------------------------------TTQTL--QLSGALIVSTPQDVALIDARKGIT 186 (295)
Q Consensus 155 -------~-~~--------------------------------------~~~l~--~ad~viiv~~~~~~s~~~~~~~~~ 186 (295)
. +. ...+. ..+.+++|+.|+..++.++.+.++
T Consensus 174 ~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~ 253 (348)
T 3io3_A 174 QLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYETERMIQ 253 (348)
T ss_dssp C---------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHHHHHHHH
Confidence 0 00 00000 136799999999999999999999
Q ss_pred HHhcCCCCeeeEEeccccCCC-C--CCCCC--ccccCCchhhHHHHHhCCcEEEeecCCc
Q 022525 187 MFSKVQVPILGLVENMSCFIC-P--HCSEP--SFIFGKGGTHRTAAEMGLKVIGEIPIEM 241 (295)
Q Consensus 187 ~l~~~~~~~~~~ViN~~~~~~-~--~~~~~--~~~~~~~~~~~~~~~~g~~~~~~Ip~~~ 241 (295)
.+++.++++.|+|+|++.... . .+... ....+...++++.+.++...+..||.-+
T Consensus 254 ~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~pl~~ 313 (348)
T 3io3_A 254 ELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLVKMPLLG 313 (348)
T ss_dssp HHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCS
T ss_pred HHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEEEecCCC
Confidence 999999999999999998532 0 00000 0000122355666666544455666443
No 31
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.78 E-value=1.4e-19 Score=170.28 Aligned_cols=210 Identities=18% Similarity=0.177 Sum_probs=118.0
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCc-cccccCcccccccCCceeeccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP-EVTKDMKMVPIENYGVKCMSMG 108 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 108 (295)
+.++|.|+++|||+||||+|+|||..+++ +|++|++||+|+++ ++...++..... .................+++..
T Consensus 325 ~~~~~~~~~~~~g~Gktt~a~~lA~~l~~-~g~~vllvD~Dp~~-~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 402 (589)
T 1ihu_A 325 NEHGLIMLMGKGGVGKTTMAAAIAVRLAD-MGFDVHLTTSDPAA-HLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETK 402 (589)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESCCC------------CCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCCCCChhhHHHHHHHHHHH-CCCcEEEEeCCCcc-cHhHHhcccCCCceeeecchHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999999 99999999999994 677777663211 1111110000000000011100
Q ss_pred --ccc----CC-CCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCC--------------------cc--chh-h
Q 022525 109 --FLV----PS-SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG--------------------DA--QLT-T 158 (295)
Q Consensus 109 --~~~----~~-~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~--------------------~~--~~~-~ 158 (295)
.+. +. ..............+..+.+.+++..||+|||||||+.. +. ... .
T Consensus 403 ~~~l~~~~~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~~~~ 482 (589)
T 1ihu_A 403 GKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPM 482 (589)
T ss_dssp HTTCCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC------------------CCH
T ss_pred hccCChhhHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHHHHH
Confidence 000 00 000000000011233444444432579999999999832 00 000 1
Q ss_pred hhhc--cCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCC---ccccCCchhhHHHHHhCCcE
Q 022525 159 TQTL--QLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEP---SFIFGKGGTHRTAAEMGLKV 233 (295)
Q Consensus 159 ~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~ 233 (295)
..+. .+|.+++|+.|+..++.++.+.++.+++.+++..++|+|++.......... ........++++.+.++.++
T Consensus 483 ~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v 562 (589)
T 1ihu_A 483 MLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHASRV 562 (589)
T ss_dssp HHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTTCSSE
T ss_pred HHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 1111 468999999999999999999999999999999999999998532110000 00011123556677777766
Q ss_pred EEeecCCcc
Q 022525 234 IGEIPIEMD 242 (295)
Q Consensus 234 ~~~Ip~~~~ 242 (295)
+.||+.+.
T Consensus 563 -~~iP~~~~ 570 (589)
T 1ihu_A 563 -ALVPVLAS 570 (589)
T ss_dssp -EEEECCSS
T ss_pred -EEccCCCC
Confidence 78886544
No 32
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.77 E-value=1.5e-18 Score=153.00 Aligned_cols=168 Identities=18% Similarity=0.191 Sum_probs=103.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccc---------cC--
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIE---------NY-- 100 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------~~-- 100 (295)
..|.++++|||+||||+|++||..+|+ .|+||++||+ ++ ++++.+||................. ..
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~-~g~~vllvd~-~~-~~l~~~~~~~~~~~~~~v~~~L~~~eid~~~~~~~~~~ 78 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLAS-QGKRVLLAGL-AE-PVLPLLLEQTLTPDPQQIAPNLEVVQFQSSVLLERNWE 78 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHH-TTCCEEEEEC-SC-SHHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCeEEEeC-CC-CChHHhhCCCCCCCcccccccccccccCHHHHHHHHHH
Confidence 456788999999999999999999999 9999999999 65 5888888876432221110000000 00
Q ss_pred -----CceeeccccccCCC--CCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCcc-------------------
Q 022525 101 -----GVKCMSMGFLVPSS--SPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA------------------- 154 (295)
Q Consensus 101 -----~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~------------------- 154 (295)
....++...+.... .....++......+..+.+.+.+..||+|||||||....-
T Consensus 79 ~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~~l~~l~~~ 158 (374)
T 3igf_A 79 EVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVRRFRQL 158 (374)
T ss_dssp HHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHHHHHHHHHH
Confidence 00000000000000 0001122222223334443333378999999999932100
Q ss_pred --c------h------------------------------------hhhhhcc--CceEEEeeCCCcchHHHHHHHHHHH
Q 022525 155 --Q------L------------------------------------TTTQTLQ--LSGALIVSTPQDVALIDARKGITMF 188 (295)
Q Consensus 155 --~------~------------------------------------~~~~l~~--ad~viiv~~~~~~s~~~~~~~~~~l 188 (295)
. . ....+.. ...+++|+.|+..++.++.+.++.+
T Consensus 159 ~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~ea~r~~~~L 238 (374)
T 3igf_A 159 FVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVSVRYLWGSA 238 (374)
T ss_dssp C-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred HhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHHHHHHHHHH
Confidence 0 0 0001111 1468999999999999999999999
Q ss_pred hcCCCCeeeEEecc
Q 022525 189 SKVQVPILGLVENM 202 (295)
Q Consensus 189 ~~~~~~~~~~ViN~ 202 (295)
.+.++++.|+|+|+
T Consensus 239 ~~~gi~v~gvVvN~ 252 (374)
T 3igf_A 239 QQIGLTIGGVIQVS 252 (374)
T ss_dssp HHHTCCEEEEEECC
T ss_pred HHcCCCccEEEEcC
Confidence 99999999999999
No 33
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.76 E-value=5e-19 Score=166.48 Aligned_cols=171 Identities=15% Similarity=0.127 Sum_probs=110.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccc---cc----------
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVP---IE---------- 98 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~---~~---------- 98 (295)
+.|.|+|+||||||||+|+|||..+|+ .|+||++||+|++ ++++..||.+............. ..
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~-~G~rVLlvd~D~~-~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~~~ 85 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAE-QGKRVLLVSTDPA-SNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQY 85 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTT-CCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHHH
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHH-CCCcEEEEECCCC-cCHHHHhCCcccCCCceeccchhhhhccCCHHHHHHHH
Confidence 456688999999999999999999999 9999999999996 79999998865433221110000 00
Q ss_pred -----cCCceeeccccccCCCCCC---ccCCchHHHHHHHHHH--hccCCCccEEEEcCCCCCCccc-h-----------
Q 022525 99 -----NYGVKCMSMGFLVPSSSPV---VWRGPMVMSALRKMSR--EVDWGNLDILVIDMPPGTGDAQ-L----------- 156 (295)
Q Consensus 99 -----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~l~~~~yD~iiiD~~~~~~~~~-~----------- 156 (295)
.....+++..........+ ...+....+.+..+++ .++ ..||+|||||||...... +
T Consensus 86 ~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~-~~yD~VIiDt~P~~~~lrll~lP~~~~~~l~ 164 (589)
T 1ihu_A 86 RARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLL-TRFDHIIFDTAPTGHTIRLLQLPGAWSSFID 164 (589)
T ss_dssp HHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHH-HHCSEEEESSCCCHHHHHHHHCGGGGTCCC-
T ss_pred HHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhc-ccCCEEEECCCCchhHHHHHHhHHHHHHHHH
Confidence 0000011100000000000 0011123456677777 555 789999999998632100 0
Q ss_pred ------------------------hhhhhc--cCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 157 ------------------------TTTQTL--QLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 157 ------------------------~~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
....+. ..+.+++|+.++..++..+.+.++.+++.+.+..++|+|++..
T Consensus 165 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~ 239 (589)
T 1ihu_A 165 SNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLP 239 (589)
T ss_dssp -----CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECC
T ss_pred HhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcC
Confidence 000010 1236999999999999999999999999999999999999974
No 34
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.70 E-value=2.5e-16 Score=141.77 Aligned_cols=166 Identities=20% Similarity=0.216 Sum_probs=105.0
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (295)
.+++|+|+ ++||+||||++.+||.+|++ + |++|++||+|++.+.....+.. .....++++++.+
T Consensus 99 ~~~vI~iv-G~~GvGKTT~a~~LA~~l~~-~~G~kVllvd~D~~r~~a~~ql~~-------------~~~~~~l~v~~~~ 163 (433)
T 2xxa_A 99 PPAVVLMA-GLQGAGKTTSVGKLGKFLRE-KHKKKVLVVSADVYRPAAIKQLET-------------LAEQVGVDFFPSD 163 (433)
T ss_dssp SSEEEEEE-CSTTSSHHHHHHHHHHHHHH-TSCCCEEEEECCCSSTTHHHHHHH-------------HHHHHTCEECCCC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-hcCCeEEEEecCCCCccHHHHHHh-------------hcccCCeeEEeCC
Confidence 46899998 58999999999999999999 8 9999999999998654321110 0112344544432
Q ss_pred cccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhh------hhccCceEEEeeCCCcchHHHHH
Q 022525 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT------QTLQLSGALIVSTPQDVALIDAR 182 (295)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~------~l~~ad~viiv~~~~~~s~~~~~ 182 (295)
. . ......+...+..+++..||+|||||||.+........ .+...+.+++|+.+... .++.
T Consensus 164 ~------~-----~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g--~~~~ 230 (433)
T 2xxa_A 164 V------G-----QKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG--QDAA 230 (433)
T ss_dssp S------S-----SCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC--TTHH
T ss_pred C------C-----CCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh--HHHH
Confidence 1 0 01123345566665435899999999987653222222 13357788887776532 3344
Q ss_pred HHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 183 KGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 183 ~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
...+.+.. ..++.|+|+|+++..... .....+...++.++.
T Consensus 231 ~~~~~f~~-~l~i~gvVlnK~D~~~~~----------g~~l~i~~~~~~Pi~ 271 (433)
T 2xxa_A 231 NTAKAFNE-ALPLTGVVLTKVDGDARG----------GAALSIRHITGKPIK 271 (433)
T ss_dssp HHHHHHHH-HSCCCCEEEECTTSSSCC----------THHHHHHHHHCCCEE
T ss_pred HHHHHHhc-cCCCeEEEEecCCCCccH----------HHHHHHHHHHCCCeE
Confidence 44444432 456778999999843111 235567777776643
No 35
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.63 E-value=1.2e-15 Score=126.20 Aligned_cols=190 Identities=12% Similarity=0.091 Sum_probs=119.1
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCcccc--ccCc----c-cccccCCc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT--KDMK----M-VPIENYGV 102 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~--~~~~----~-~~~~~~~~ 102 (295)
.|+.|.|++...|+|||+++++|+..|++ +|++|..+- |.+.... ... .++. |... . .+....+.
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~-~G~~V~~~K--Pv~~g~~---~~~--~~~~~~D~~~~~~~~~~~~~~~~~ 74 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEH-QNIKSLCLK--PVASGQS---QFS--ELCEDVESILNAYKHKFTAAEINL 74 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHH-TTCCEEEEC--SEEESBC---SSS--SSBHHHHHHHHHTTTSSCHHHHCS
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHH-CCCeeEEec--ceeecCc---cCC--CCCChHHHHHHhcCCCCChhhEEE
Confidence 47999999999999999999999999999 999999863 3221110 000 0110 1000 0 01111111
Q ss_pred eeeccccccCCCCC-CccCCchHHHHHHHHHHh-ccCCCccEEEEcCCCCCCccch---hhhhh--ccCceEEEeeCCCc
Q 022525 103 KCMSMGFLVPSSSP-VVWRGPMVMSALRKMSRE-VDWGNLDILVIDMPPGTGDAQL---TTTQT--LQLSGALIVSTPQD 175 (295)
Q Consensus 103 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-l~~~~yD~iiiD~~~~~~~~~~---~~~~l--~~ad~viiv~~~~~ 175 (295)
..+.. .. +++.. .........+.+...++. +. ..||+||||+++|+..... ....+ ....-+|+|+.+..
T Consensus 75 ~~~~~-p~-sp~~aa~~~~~~i~~~~i~~~~~~~l~-~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~ 151 (228)
T 3of5_A 75 ISFNQ-AV-APHIIAAKTKVDISIENLKQFIEDKYN-QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKV 151 (228)
T ss_dssp EEESS-SS-CHHHHHHHTTCCCCHHHHHHHHHGGGG-SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECST
T ss_pred EEECC-CC-CHHHHHHHcCCCCCHHHHHHHHHHHHH-ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCc
Confidence 11110 00 00000 000111235678888888 87 8999999999987753211 11111 01234888999999
Q ss_pred chHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeec
Q 022525 176 VALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIP 238 (295)
Q Consensus 176 ~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip 238 (295)
.++..+...++.++..+.++.|+|+|+++.... ......+.+.+.+|.+++++||
T Consensus 152 ~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~--------~~~~~~~~l~~~~g~pvLG~iP 206 (228)
T 3of5_A 152 GCINHTLLTINELNRHNIKLAGWIANCNDSNIK--------YIDEQINTIEELSGYKCSAKIS 206 (228)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEEEEECCTTCS--------CHHHHHHHHHHHHSCCCSEEEE
T ss_pred chHHHHHHHHHHHHhCCCcEEEEEEECcCCcch--------hhHHHHHHHHHhhCCCEEEECC
Confidence 999999999999999999999999999873211 1123466777778999999999
No 36
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.63 E-value=2.3e-15 Score=129.28 Aligned_cols=165 Identities=21% Similarity=0.226 Sum_probs=106.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
+++|+++ +++|+||||++.+||..++. .|++|+++|+|++.+.....+.. + ....++++++..
T Consensus 98 ~~vi~i~-G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~~ql~~-----~--------~~~~~v~v~~~~-- 160 (297)
T 1j8m_F 98 PYVIMLV-GVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQ-----L--------GQQIGVPVYGEP-- 160 (297)
T ss_dssp SEEEEEE-CSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHH-----H--------HHHHTCCEECCT--
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHH-----H--------hccCCeEEEecC--
Confidence 6888887 68999999999999999999 99999999999998654322210 0 111233443321
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCC--ccchhh------hhhccCceEEEeeCCCcchHHHHH
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG--DAQLTT------TQTLQLSGALIVSTPQDVALIDAR 182 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~--~~~~~~------~~l~~ad~viiv~~~~~~s~~~~~ 182 (295)
. .......+...++.+++..||+|||||||... ...... .....+|.+++|+.+... ..+.
T Consensus 161 ----~-----~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~ 229 (297)
T 1j8m_F 161 ----G-----EKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAY 229 (297)
T ss_dssp ----T-----CCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHH
T ss_pred ----C-----CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHH
Confidence 0 01112334556666643789999999998776 311111 234478999999877642 3444
Q ss_pred HHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 183 KGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 183 ~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
...+.+.. ..++.++|+|+++.... ......+...++.++.
T Consensus 230 ~~~~~~~~-~~~i~gvVlnk~D~~~~----------~g~~~~~~~~~~~pi~ 270 (297)
T 1j8m_F 230 DLASKFNQ-ASKIGTIIITKMDGTAK----------GGGALSAVAATGATIK 270 (297)
T ss_dssp HHHHHHHH-TCTTEEEEEECGGGCTT----------HHHHHHHHHTTTCCEE
T ss_pred HHHHHHHh-hCCCCEEEEeCCCCCcc----------hHHHHHHHHHHCcCEE
Confidence 44455543 46778999999984311 1235567777787765
No 37
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.60 E-value=1.4e-14 Score=125.53 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=102.4
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.+++|+|+|. +|+||||++.+||..++. .|++|+++|+|++.+.....+. .+.+. ....++.++|.+.
T Consensus 104 ~~~vI~ivG~-~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r~~a~~ql~-----~~~~~-----~~~~~l~vip~~~ 171 (320)
T 1zu4_A 104 RLNIFMLVGV-NGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAGATQQLE-----EWIKT-----RLNNKVDLVKANK 171 (320)
T ss_dssp SCEEEEEESS-TTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHHHHHHHH-----HHHTT-----TSCTTEEEECCSS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHH-----HHHhc-----cccCCceEEeCCC
Confidence 3789999987 999999999999999999 9999999999997643211000 00000 0023445543221
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhh------------ccCceEEEeeCCCcch
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT------------LQLSGALIVSTPQDVA 177 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l------------~~ad~viiv~~~~~~s 177 (295)
... .. .......+...++ ..||+|||||||.+......+..+ ..+|.+++|+.+.. .
T Consensus 172 -----~~~---~p-~~~~~~~l~~~~~-~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~-~ 240 (320)
T 1zu4_A 172 -----LNA---DP-ASVVFDAIKKAKE-QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT-G 240 (320)
T ss_dssp -----TTC---CH-HHHHHHHHHHHHH-TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG-T
T ss_pred -----CCC---CH-HHHHHHHHHHHHh-cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC-c
Confidence 000 00 1112333333445 899999999999876321111111 13678888877663 3
Q ss_pred HHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 178 LIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
. .+....+.+. ...++.|+|+|+++..... ..+..+...++.|+.
T Consensus 241 ~-~~l~~~~~~~-~~~~i~GvVltk~d~~~~~----------g~~~~~~~~~~~Pi~ 285 (320)
T 1zu4_A 241 Q-NGVIQAEEFS-KVADVSGIILTKMDSTSKG----------GIGLAIKELLNIPIK 285 (320)
T ss_dssp H-HHHHHHHHHT-TTSCCCEEEEECGGGCSCT----------THHHHHHHHHCCCEE
T ss_pred H-HHHHHHHHHh-hcCCCcEEEEeCCCCCCch----------hHHHHHHHHHCcCEE
Confidence 2 3333333333 2367889999999853211 346677778888874
No 38
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.58 E-value=1.8e-14 Score=123.78 Aligned_cols=166 Identities=19% Similarity=0.167 Sum_probs=104.5
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.+++|+++ +++|+||||++.+||..++. .|.+|+++|+|++.+.....++. .....++++++.+.
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~-------------~~~~~~l~~~~~~~ 161 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRL-------------LGEKVGVPVLEVMD 161 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHH-------------HHHHHTCCEEECCT
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHH-------------hcccCCeEEEEcCC
Confidence 57899998 78999999999999999999 99999999999987544321210 01122344443321
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhh------ccCceEEEeeCCCcchHHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT------LQLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l------~~ad~viiv~~~~~~s~~~~~~ 183 (295)
. .. ....++..+..+....||+|||||||..+........+ ...|.+++|+.+.. . .++..
T Consensus 162 ------~---~~--p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-~-~~~~~ 228 (295)
T 1ls1_A 162 ------G---ES--PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALS 228 (295)
T ss_dssp ------T---CC--HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-HHHHH
T ss_pred ------C---CC--HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-c-HHHHH
Confidence 0 00 11222445555421689999999998776422222221 24788888877653 2 34444
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
..+.+.. ..++.|+|+|+++.... ......+....|.|+.
T Consensus 229 ~~~~~~~-~~~i~givlnk~d~~~~----------~g~~~~~~~~~~~pi~ 268 (295)
T 1ls1_A 229 VARAFDE-KVGVTGLVLTKLDGDAR----------GGAALSARHVTGKPIY 268 (295)
T ss_dssp HHHHHHH-HTCCCEEEEECGGGCSS----------CHHHHHHHHHHCCCEE
T ss_pred HHHHHhh-cCCCCEEEEECCCCCcc----------HHHHHHHHHHHCcCEE
Confidence 4444432 35678999999985311 1346677778888776
No 39
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.56 E-value=5.8e-14 Score=117.27 Aligned_cols=191 Identities=15% Similarity=0.114 Sum_probs=118.7
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccc----cCCceee
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIE----NYGVKCM 105 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~ 105 (295)
.++.|.|++...|+|||++++.|+.+|++ +|++|..+- |.+... .+.. .|...+.... ..+...+
T Consensus 25 ~m~~i~Itgt~t~vGKT~vt~gL~~~l~~-~G~~V~~fK--Pv~~g~------~~~~--~D~~~~~~~~g~~~~~~~~~~ 93 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAARQ-AGIDVAVCK--PVQTGT------ARGD--DDLAEVGRLAGVTQLAGLARY 93 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHHH-TTCCEEEEE--EEECCG------GGTC--CHHHHHHHHHCCCEEEEEEEC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEe--eeecCC------CCCC--HHHHHHHHHcCCCCCCCCeeE
Confidence 37999999999999999999999999999 999999874 211110 0000 1110000000 0011000
Q ss_pred c--cccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccc----hhhhhh--ccCceEEEeeCCCcch
Q 022525 106 S--MGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ----LTTTQT--LQLSGALIVSTPQDVA 177 (295)
Q Consensus 106 ~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~----~~~~~l--~~ad~viiv~~~~~~s 177 (295)
. ..+.... ..........+.+...++.+. ..||+||||+++|+.... .....+ ....-+|+|+.+...+
T Consensus 94 ~~p~sP~~aa--~~~~~~~~~~~~i~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~ 170 (251)
T 3fgn_A 94 PQPMAPAAAA--EHAGMALPARDQIVRLIADLD-RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGT 170 (251)
T ss_dssp SSSSCHHHHH--HHTTCCCCCHHHHHHHHHTTC-CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTH
T ss_pred CCCCChHHHH--HHcCCCCCCHHHHHHHHHHHH-hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCcc
Confidence 0 0000000 000011223567888888888 899999999999875321 111111 1245688999999889
Q ss_pred HHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccc
Q 022525 178 LIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDI 243 (295)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~ 243 (295)
+..+...++.++..+.++.|+|+|+++.. .. ... ....+..+++ ++++++||+++..
T Consensus 171 i~~~~lt~~~l~~~g~~i~GvIlN~v~~~------~~-~~~-~~~~~~le~~-vpvLG~iP~~~~~ 227 (251)
T 3fgn_A 171 LNHTKLTLEALAAQQVSCAGLVIGSWPDP------PG-LVA-ASNRSALARI-AMVRAALPAGAAS 227 (251)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEEECSS------CC-HHH-HHHHHHHHHH-SCEEEEEETTGGG
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEECCCCc------hh-hhh-hhHHHHHHHh-CCEEEEeeCCCCc
Confidence 99999999999889999999999998621 10 001 1123444455 9999999998753
No 40
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.54 E-value=4.9e-14 Score=126.06 Aligned_cols=166 Identities=19% Similarity=0.164 Sum_probs=105.4
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.+++|+++ +++|+||||++.+||..++. .|++|+++|+|++.+.....+... ....++++++.+.
T Consensus 97 ~~~vi~i~-G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~v~~~~~ 161 (425)
T 2ffh_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMD 161 (425)
T ss_dssp SSEEEEEE-CCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCCEEECCT
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEeeccccCchhHHHHHHh-------------cccCCccEEecCC
Confidence 46899998 67999999999999999999 999999999999986543322110 1123444444321
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhh------hhhccCceEEEeeCCCcchHHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTT------TQTLQLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~------~~l~~ad~viiv~~~~~~s~~~~~~ 183 (295)
. ......+...++.++...||+|||||||......... ......|.+++|+.+.. . .++..
T Consensus 162 ------~-----~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t-g-q~av~ 228 (425)
T 2ffh_A 162 ------G-----ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALS 228 (425)
T ss_dssp ------T-----CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-THHHH
T ss_pred ------C-----CCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc-h-HHHHH
Confidence 0 0112233556666522789999999998775321111 12235788888877653 2 44444
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
..+.+.. ..++.|+|+|+++.... ......+....|.++.
T Consensus 229 ~a~~f~~-~l~i~GVIlTKlD~~~~----------~g~alsi~~~~g~PI~ 268 (425)
T 2ffh_A 229 VARAFDE-KVGVTGLVLTKLDGDAR----------GGAALSARHVTGKPIY 268 (425)
T ss_dssp HHHHHHH-HTCCCEEEEESGGGCSS----------CHHHHHHHHHHCCCEE
T ss_pred HHHHHHh-cCCceEEEEeCcCCccc----------HHHHHHHHHHHCCCEE
Confidence 4444432 35678999999984311 1235567777787754
No 41
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.53 E-value=1.1e-14 Score=123.03 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=41.3
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCc
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~ 76 (295)
.+...++++++|||+||||++.+||..++ .|++|++||+|+|.+.+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd~D~~~~~~ 56 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLDTGVKEL 56 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECCSSCSCC
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEeCCCCcccc
Confidence 34578899999999999999999999998 69999999999998665
No 42
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.53 E-value=2.2e-14 Score=119.21 Aligned_cols=212 Identities=10% Similarity=-0.011 Sum_probs=120.1
Q ss_pred cccCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccc-----cccCccccccc
Q 022525 25 LKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEV-----TKDMKMVPIEN 99 (295)
Q Consensus 25 ~~~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~ 99 (295)
.....+++.|.|++...|+|||++++.|+.+|++ +|.+|..+- |.+......-+.+....+ .....-.+...
T Consensus 15 ~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~-~G~~V~~fK--Pv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~ 91 (242)
T 3qxc_A 15 ENLYFQGHMLFISATNTNAGKTTCARLLAQYCNA-CGVKTILLK--PIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKD 91 (242)
T ss_dssp ----CCCEEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEC--CEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHH
T ss_pred hHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHh-CCCceEEEe--eeecCCcccCCCCchHHHHHHHHHHHhCCCChHH
Confidence 3455668999999999999999999999999999 999999984 322111100000000000 00000001010
Q ss_pred CCceeec--cccccCCCCCCccCC-chHHHHHHHHHHhccCCCccEEEEcCCCCCCccc---hhhhhh--ccCceEEEee
Q 022525 100 YGVKCMS--MGFLVPSSSPVVWRG-PMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ---LTTTQT--LQLSGALIVS 171 (295)
Q Consensus 100 ~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~---~~~~~l--~~ad~viiv~ 171 (295)
.+...+. ..+..+. ...... ....+.+.+.++.+. ..||+||||+++|+.... .....+ ....-+|+|+
T Consensus 92 ~~p~~~~~p~sp~~aa--~~~g~~~~i~~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~ 168 (242)
T 3qxc_A 92 ISFYRYHKVSAPLIAQ--QEEDPNAPIDTDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLIS 168 (242)
T ss_dssp HCCEECSSSSCHHHHH--HHHCTTCCCCHHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEE
T ss_pred eeeEEECCCCChHHHH--HHcCCCCcCCHHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEE
Confidence 1111100 0000000 000000 223567888888888 899999999999876421 111111 1124588899
Q ss_pred CCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCcccccccc
Q 022525 172 TPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSD 248 (295)
Q Consensus 172 ~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~ 248 (295)
.+...++..+...++.++..+.+ .|+|+|+++... ......+.++++.......+++.++|.-+.+.+.+-
T Consensus 169 ~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~-----~~~~~~~p~le~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (242)
T 3qxc_A 169 HDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNT-----AFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFAL 239 (242)
T ss_dssp CCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCC-----HHHHHTHHHHHHHHHHCSSCCEEGGGCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCcc-----chhhhhHHHHHHhcCcccCCceeccccHHHHHHHHh
Confidence 99888999999999999999999 999999997321 001111122444444445566666666655554443
No 43
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.49 E-value=3.8e-13 Score=120.50 Aligned_cols=166 Identities=15% Similarity=0.196 Sum_probs=101.0
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.+++|.+++. +|+||||++.+||.+|++ .|++|++||+|++.+....-+..- ....++++....
T Consensus 99 ~p~vIlivG~-~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~-------------~~~~gvpv~~~~- 162 (443)
T 3dm5_A 99 KPTILLMVGI-QGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQL-------------LDRYHIEVFGNP- 162 (443)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHH-------------HGGGTCEEECCT-
T ss_pred CCeEEEEECc-CCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHH-------------HHhcCCcEEecC-
Confidence 3688888766 999999999999999999 999999999999876432111100 011122222110
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch------hhhhhccCceEEEeeCCCcchHHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL------TTTQTLQLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~------~~~~l~~ad~viiv~~~~~~s~~~~~~ 183 (295)
. .......+...++.+....||+|||||++....... .+......|.+++|+.+... +++..
T Consensus 163 -----~-----~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g--q~a~~ 230 (443)
T 3dm5_A 163 -----Q-----EKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG--QQAYN 230 (443)
T ss_dssp -----T-----CCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHH
T ss_pred -----C-----CCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc--hhHHH
Confidence 0 011234445556655535799999999976543211 11223356888888877652 23333
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
..+.+.. ..++.|+|+|+++.... ......+....+.|+.
T Consensus 231 ~a~~f~~-~~~i~gVIlTKlD~~~~----------gG~~ls~~~~~g~PI~ 270 (443)
T 3dm5_A 231 QALAFKE-ATPIGSIIVTKLDGSAK----------GGGALSAVAATGAPIK 270 (443)
T ss_dssp HHHHHHH-SCTTEEEEEECCSSCSS----------HHHHHHHHHTTCCCEE
T ss_pred HHHHHHh-hCCCeEEEEECCCCccc----------ccHHHHHHHHHCCCEE
Confidence 4444442 34677899999984211 1235566667787764
No 44
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.46 E-value=9e-13 Score=118.59 Aligned_cols=164 Identities=21% Similarity=0.207 Sum_probs=99.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
+++|+|+| .+|+||||++.+||..+++ .|++|++||+|++.+.....+.. .....++++++...
T Consensus 99 ~~vI~ivG-~~GvGKTTla~~La~~l~~-~G~kVllv~~D~~r~~a~~qL~~-------------~~~~~gv~v~~~~~- 162 (432)
T 2v3c_C 99 QNVILLVG-IQGSGKTTTAAKLARYIQK-RGLKPALIAADTYRPAAYEQLKQ-------------LAEKIHVPIYGDET- 162 (432)
T ss_dssp CCCEEEEC-CSSSSTTHHHHHHHHHHHH-HHCCEEEECCSCCCTTGGGSSHH-------------HHHHSSCCEECCSS-
T ss_pred CeEEEEEC-CCCCCHHHHHHHHHHHHHH-cCCeEEEEeccccCchHHHHHHH-------------hhhccCcceEecCC-
Confidence 57888887 5999999999999999999 89999999999998764322210 01122344433220
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchh------hhhhccCceEEEeeCCCcchHHHHHHH
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT------TTQTLQLSGALIVSTPQDVALIDARKG 184 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~------~~~l~~ad~viiv~~~~~~s~~~~~~~ 184 (295)
.. .+. ...+...+..+ ..||+|||||||........ ...+..+|.+++|+.+.... ++...
T Consensus 163 ----~~---~dp--~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~ 229 (432)
T 2v3c_C 163 ----RT---KSP--VDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQ 229 (432)
T ss_dssp ----SC---CSS--STTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHH
T ss_pred ----CC---CCH--HHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHH
Confidence 00 000 01123444444 68999999999876531111 11223578888887664431 33333
Q ss_pred HHHHhcCCC-CeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 185 ITMFSKVQV-PILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 185 ~~~l~~~~~-~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
.+.+. ... ++.++|+|+++.... ......+...++.++.
T Consensus 230 ~~~~~-~~~~~i~gvVlnK~D~~~~----------~g~~l~~~~~~~~pi~ 269 (432)
T 2v3c_C 230 AKAFK-EAVGEIGSIIVTKLDGSAK----------GGGALSAVAETKAPIK 269 (432)
T ss_dssp HHHHH-TTSCSCEEEEEECSSSCST----------THHHHHHHHHSSCCEE
T ss_pred HHHHh-hcccCCeEEEEeCCCCccc----------hHHHHHHHHHHCCCEE
Confidence 44443 245 778999999984211 1224457777787765
No 45
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.44 E-value=6.5e-13 Score=121.32 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=98.7
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccc
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (295)
..+++|+|++. +|+||||++.+||..+++ .|++|++||+|++.+.....+.... ...++++++..
T Consensus 99 ~~~~vI~ivG~-~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~-------------~~~~i~v~~~~ 163 (504)
T 2j37_W 99 GKQNVIMFVGL-QGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNA-------------TKARIPFYGSY 163 (504)
T ss_dssp S--EEEEEECS-TTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHH-------------HHHTCCEEECC
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHh-------------hccCceEEccC
Confidence 34678999855 899999999999999999 9999999999998865432221100 01122222211
Q ss_pred cccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchh------hhhhccCceEEEeeCCCcchHHHHH
Q 022525 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT------TTQTLQLSGALIVSTPQDVALIDAR 182 (295)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~------~~~l~~ad~viiv~~~~~~s~~~~~ 182 (295)
.. ......+...+..+.+..||+||||||+........ ......+|.+++|+.+.... . ..
T Consensus 164 ------~~-----~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~-~-~~ 230 (504)
T 2j37_W 164 ------TE-----MDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ-A-CE 230 (504)
T ss_dssp ------CC-----SCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT-T-HH
T ss_pred ------CC-----CCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc-c-HH
Confidence 00 011222334444443378999999999876521111 11123678888888776531 1 23
Q ss_pred HHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 183 KGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 183 ~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
...+.+.+. .++.++|+|+++.... ......+...+|.|+.
T Consensus 231 ~~a~~~~~~-~~i~gvVlNK~D~~~~----------~g~~l~~~~~~g~PI~ 271 (504)
T 2j37_W 231 AQAKAFKDK-VDVASVIVTKLDGHAK----------GGGALSAVAATKSPII 271 (504)
T ss_dssp HHHHHHHHH-HCCCCEEEECTTSCCC----------CTHHHHHHHHHCCCEE
T ss_pred HHHHHHHhh-cCceEEEEeCCccccc----------hHHHHHHHHHhCCCeE
Confidence 333444332 4556899999984311 1224456677887764
No 46
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.39 E-value=6.1e-12 Score=112.72 Aligned_cols=215 Identities=19% Similarity=0.166 Sum_probs=111.5
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.+++|+++ +.+|+||||++.+||..++. .|++|+++|+|++.+.....+.. .....++.+...
T Consensus 96 ~~~vI~lv-G~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~r~~a~eqL~~-------------~~~~~gv~~~~~-- 158 (433)
T 3kl4_A 96 LPFIIMLV-GVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVYRPAAYDQLLQ-------------LGNQIGVQVYGE-- 158 (433)
T ss_dssp SSEEEEEC-CCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCSCHHHHHHHHH-------------HHHTTTCCEECC--
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCccchhHHHHHHH-------------HHHhcCCceeec--
Confidence 46788876 67899999999999999999 99999999999876432111100 000111111111
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCC--ccch------hhhhhccCceEEEeeCCCcchHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG--DAQL------TTTQTLQLSGALIVSTPQDVALIDA 181 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~--~~~~------~~~~l~~ad~viiv~~~~~~s~~~~ 181 (295)
.. ...........+..+.+..||+||||||+... .... .+......+.+++|..+... +++
T Consensus 159 ----~~-----~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a 227 (433)
T 3kl4_A 159 ----PN-----NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKA 227 (433)
T ss_dssp ----TT-----CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGG
T ss_pred ----cc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHH
Confidence 00 01122334455666654789999999997544 2111 11122245788888776542 233
Q ss_pred HHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCCCh
Q 022525 182 RKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDST 261 (295)
Q Consensus 182 ~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~s~ 261 (295)
....+.+.+ ..++.++|+|+++.... ......+....|.|+. ++-..+.+. .+-...|+.-
T Consensus 228 ~~~a~~f~~-~~~~~gVIlTKlD~~a~----------~G~als~~~~~g~Pi~-fig~Ge~v~-------dL~~f~p~~~ 288 (433)
T 3kl4_A 228 YDLASRFHQ-ASPIGSVIITKMDGTAK----------GGGALSAVVATGATIK-FIGTGEKID-------ELETFNAKRF 288 (433)
T ss_dssp HHHHHHHHH-HCSSEEEEEECGGGCSC----------HHHHHHHHHHHTCEEE-EEECCSSSS-------CEEECCHHHH
T ss_pred HHHHHHHhc-ccCCcEEEEeccccccc----------chHHHHHHHHHCCCEE-EEECCCChH-------hCccCCHHHH
Confidence 334444442 23567899999984311 1235566667787764 222222221 1222333322
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 022525 262 VSR-----AYGEVAVNVVNRLQELAKEQEHPESNS 291 (295)
Q Consensus 262 ~~~-----~~~~l~~~l~~~~~~~~~~~~~~~~~~ 291 (295)
+.+ ++..|.+++.+.+.+..+++-..++++
T Consensus 289 ~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~ 323 (433)
T 3kl4_A 289 VSRILGMGDIESILEKVKGLEEYDKIQKKMEDVME 323 (433)
T ss_dssp HHHHHCSSHHHHHHHHHHHC---------------
T ss_pred HHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 222 566777777666655543333333333
No 47
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.29 E-value=5.7e-11 Score=102.14 Aligned_cols=166 Identities=19% Similarity=0.166 Sum_probs=97.2
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccc
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (295)
..+++|+++|. +|+||||++.+||..++. .|.+|+++|+|.+.+....-+. .+ ....++.+++..
T Consensus 102 ~~~~vi~ivG~-~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~a~eqL~-----~~--------~~~~gl~~~~~~ 166 (306)
T 1vma_A 102 EPPFVIMVVGV-NGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLK-----IW--------GERVGATVISHS 166 (306)
T ss_dssp SSCEEEEEECC-TTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHH-----HH--------HHHHTCEEECCS
T ss_pred CCCeEEEEEcC-CCChHHHHHHHHHHHHHh-cCCEEEEEccccccHHHHHHHH-----HH--------HHHcCCcEEecC
Confidence 34789999987 999999999999999999 9999999999987643210000 00 011122332211
Q ss_pred cccCCCCCCccCCchHHHH-HHHHHHhccCCCccEEEEcCCCCCCccchhhh-------hh-----ccCceEEEeeCCCc
Q 022525 109 FLVPSSSPVVWRGPMVMSA-LRKMSREVDWGNLDILVIDMPPGTGDAQLTTT-------QT-----LQLSGALIVSTPQD 175 (295)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~-l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~-------~l-----~~ad~viiv~~~~~ 175 (295)
.. .+ .... ...+...+. ..||+||+|+|+.......... .+ ...+.+++|.....
T Consensus 167 ------s~---~~--~~~v~~~al~~a~~-~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 167 ------EG---AD--PAAVAFDAVAHALA-RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp ------TT---CC--HHHHHHHHHHHHHH-TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred ------Cc---cC--HHHHHHHHHHHHHh-cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 00 01 1111 122223344 7899999999976432111000 01 12577788876652
Q ss_pred chHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 176 VALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 176 ~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
. .+.....+.+.+ ..++.|+|+|+++..... ..+..+...++.|+.
T Consensus 235 -~-~~~l~~a~~~~~-~~~i~gvVlTk~D~~~~g----------G~~l~~~~~~~~Pi~ 280 (306)
T 1vma_A 235 -G-QNGLVQAKIFKE-AVNVTGIILTKLDGTAKG----------GITLAIARELGIPIK 280 (306)
T ss_dssp -H-HHHHHHHHHHHH-HSCCCEEEEECGGGCSCT----------THHHHHHHHHCCCEE
T ss_pred -C-HHHHHHHHHHHh-cCCCCEEEEeCCCCccch----------HHHHHHHHHHCCCEE
Confidence 2 233333333332 256789999999843221 347788888888776
No 48
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.26 E-value=6e-11 Score=101.67 Aligned_cols=161 Identities=16% Similarity=0.131 Sum_probs=94.5
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
.+++|++++. +|+||||++.+||..++...|++|+++|+|++.+.....+.... ...++.+...
T Consensus 104 ~g~vi~lvG~-~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~-------------~~~gl~~~~~-- 167 (296)
T 2px0_A 104 HSKYIVLFGS-TGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYA-------------ELLQAPLEVC-- 167 (296)
T ss_dssp CSSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHH-------------TTTTCCCCBC--
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHH-------------HhcCCCeEec--
Confidence 4689999876 89999999999999999437999999999997644321111000 0011111100
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchh---hhhhc---cCceEEEeeCCCcchHHHHHH
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT---TTQTL---QLSGALIVSTPQDVALIDARK 183 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~---~~~l~---~ad~viiv~~~~~~s~~~~~~ 183 (295)
.. ...+...+..+ .+||+||+||++........ +..+. ..+.+++++.... ....+..
T Consensus 168 ----------~~---~~~l~~al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~-~~~~~~~ 231 (296)
T 2px0_A 168 ----------YT---KEEFQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATA-KYEDMKH 231 (296)
T ss_dssp ----------SS---HHHHHHHHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTB-CHHHHHH
T ss_pred ----------CC---HHHHHHHHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCC-CHHHHHH
Confidence 00 13345555554 57999999998655422111 11122 2455566653333 3444555
Q ss_pred HHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 184 GITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 184 ~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
..+.+. .....++|+|+++.... ......+...+|.++.
T Consensus 232 ~~~~~~--~l~~~giVltk~D~~~~----------~g~~~~~~~~~~~pi~ 270 (296)
T 2px0_A 232 IVKRFS--SVPVNQYIFTKIDETTS----------LGSVFNILAESKIGVG 270 (296)
T ss_dssp HTTTTS--SSCCCEEEEECTTTCSC----------CHHHHHHHHTCSCCCS
T ss_pred HHHHHh--cCCCCEEEEeCCCcccc----------hhHHHHHHHHHCcCEE
Confidence 444444 34567899999984311 1346677777777654
No 49
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=99.13 E-value=1.6e-10 Score=94.09 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=40.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~ 75 (295)
++...|+++||||||||++.++|..+++ .|++|+++|+|+|+..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVETHGRA 48 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCTTCH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCCCCCh
Confidence 6788888999999999999999999999 9999999999998744
No 50
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.11 E-value=2.2e-10 Score=100.85 Aligned_cols=149 Identities=15% Similarity=0.144 Sum_probs=78.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc-cccccCCCccccccCccccc-ccCCceeeccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPI-ENYGVKCMSMG 108 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~-~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 108 (295)
..+|+++ +++|+||||++.+|+..++. .|++|+++|+|++.+... .+++ +....... ...++.+.+..
T Consensus 79 ~~~I~i~-G~~G~GKSTl~~~L~~~l~~-~g~kV~vi~~Dp~~~~~~g~~l~--------d~~~~~~~~~~~~~~i~~~~ 148 (355)
T 3p32_A 79 AHRVGIT-GVPGVGKSTAIEALGMHLIE-RGHRVAVLAVDPSSTRTGGSILG--------DKTRMARLAVHPNAYIRPSP 148 (355)
T ss_dssp SEEEEEE-CCTTSSHHHHHHHHHHHHHT-TTCCEEEEEEC------------------------CHHHHTCTTEEEECCC
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHh-CCCceEEEecCCCCCcccchhcc--------chhhHHhhccCCCeeEEECC
Confidence 5677775 67999999999999999999 999999999999875321 1111 10000000 11222222211
Q ss_pred cccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHH
Q 022525 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMF 188 (295)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l 188 (295)
.... ...........+..+....||++||||| |+.... ...+..+|.+++|+.+....... .....+
T Consensus 149 ------~~~~--~~~~~~~t~d~i~~~~~~~~~~iiiDTp-Gi~~~~--~~~~~~aD~vl~V~d~~~~~~~~--~l~~~~ 215 (355)
T 3p32_A 149 ------TSGT--LGGVTRATRETVVLLEAAGFDVILIETV-GVGQSE--VAVANMVDTFVLLTLARTGDQLQ--GIKKGV 215 (355)
T ss_dssp --------CC--HHHHHHHHHHHHHHHHHTTCCEEEEEEC-SCSSHH--HHHHTTCSEEEEEEESSTTCTTT--TCCTTS
T ss_pred ------CCcc--ccchhHHHHHHHHHHhhCCCCEEEEeCC-CCCcHH--HHHHHhCCEEEEEECCCCCccHH--HHHHhH
Confidence 0000 0011222233333333378999999998 555322 23346899999999876542110 000001
Q ss_pred hcCCCCeeeEEeccccC
Q 022525 189 SKVQVPILGLVENMSCF 205 (295)
Q Consensus 189 ~~~~~~~~~~ViN~~~~ 205 (295)
...+ ..+|+||.|.
T Consensus 216 --~~~p-~ivVlNK~Dl 229 (355)
T 3p32_A 216 --LELA-DIVVVNKADG 229 (355)
T ss_dssp --GGGC-SEEEEECCCG
T ss_pred --hhcC-CEEEEECCCC
Confidence 1123 3599999983
No 51
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.92 E-value=3.3e-09 Score=92.86 Aligned_cols=150 Identities=15% Similarity=0.134 Sum_probs=76.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc-cccccCCCccccccCcccccccCCceeecccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
+.+|++++ ++|+||||+..+|+..++. .|.+|.++|.|++.+... .+++.... ... +...+.+.
T Consensus 56 ~~~i~i~G-~~g~GKSTl~~~l~~~~~~-~~~~v~v~~~d~~~~~~~~~il~d~~~--~~~-----------~~~~~~~~ 120 (341)
T 2p67_A 56 TLRLGVTG-TPGAGKSTFLEAFGMLLIR-EGLKVAVIAVDPSSPVTGGSILGDKTR--MND-----------LARAEAAF 120 (341)
T ss_dssp SEEEEEEE-CTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC-----------------CT-----------TTTCTTEE
T ss_pred CEEEEEEc-CCCCCHHHHHHHHHHHHHh-cCCeEEEEeecCCcCCCCcceecccch--HHh-----------hccCCCce
Confidence 68888875 9999999999999999999 999999999999875432 12221100 000 00000111
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHh
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFS 189 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~ 189 (295)
..+...... .+.. ...+...+..+.+.+|+++|+|||+.... .. .....+|.+++|+.+..... . ..+.. .
T Consensus 121 i~~~~~~~~-l~g~-~~~~~~~~~~~~~~~~~i~liDTpG~~~~-~~--~~~~~aD~vl~Vvd~~~~~~--~-~~l~~-~ 191 (341)
T 2p67_A 121 IRPVPSSGH-LGGA-SQRARELMLLCEAAGYDVVIVETVGVGQS-ET--EVARMVDCFISLQIAGGGDD--L-QGIKK-G 191 (341)
T ss_dssp EEEECC------CH-HHHHHHHHHHHHHTTCSEEEEEEECCTTH-HH--HHHTTCSEEEEEECC---------CCCCH-H
T ss_pred eecCccccc-cchh-HHHHHHHHHHhhccCCCEEEEeCCCccch-HH--HHHHhCCEEEEEEeCCccHH--H-HHHHH-h
Confidence 000000000 0011 12222222222227899999999854332 22 23568999999998864321 1 00000 0
Q ss_pred cCCCCeeeEEeccccC
Q 022525 190 KVQVPILGLVENMSCF 205 (295)
Q Consensus 190 ~~~~~~~~~ViN~~~~ 205 (295)
..+.+. .+|+||.+.
T Consensus 192 ~~~~p~-ivv~NK~Dl 206 (341)
T 2p67_A 192 LMEVAD-LIVINKDDG 206 (341)
T ss_dssp HHHHCS-EEEECCCCT
T ss_pred hhcccC-EEEEECCCC
Confidence 012233 489999984
No 52
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.62 E-value=9e-07 Score=85.95 Aligned_cols=92 Identities=9% Similarity=0.061 Sum_probs=59.4
Q ss_pred CccEEEEcCCCCCCcc------chhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCC
Q 022525 139 NLDILVIDMPPGTGDA------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSE 212 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~ 212 (295)
.+|++||....|+... ...+.....+ -||+|......++..+...++.+...+.++.|+|+|+...
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~~-PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~------- 272 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFRL-PGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGL------- 272 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGGCC-CEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSS-------
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHcCC-CEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCch-------
Confidence 7999999998765421 1122222222 3677777788889999999999988899999999997641
Q ss_pred CccccCCchhhHH-HHHhCCcEEEeecCCcc
Q 022525 213 PSFIFGKGGTHRT-AAEMGLKVIGEIPIEMD 242 (295)
Q Consensus 213 ~~~~~~~~~~~~~-~~~~g~~~~~~Ip~~~~ 242 (295)
.. .+...+. .+..++++++++|+.+.
T Consensus 273 ~~----~~~l~~~l~~~~~v~vLg~lP~~~~ 299 (831)
T 4a0g_A 273 VN----EVPLTSYLRNKVPVLVLPPVPKDPS 299 (831)
T ss_dssp CT----HHHHHHHTTTSSCEEEECCCCCCTT
T ss_pred hH----HHHHHHHHHhCCCceeeCCCCCCCH
Confidence 00 0112222 22346666788887654
No 53
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=98.56 E-value=2.3e-08 Score=88.74 Aligned_cols=74 Identities=24% Similarity=0.177 Sum_probs=57.9
Q ss_pred hhhhccccccccCCCcc-ccCCCCeEEEEeeCCC---CCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCC
Q 022525 9 TRLGGVRYYAAFGSKDL-KIDGVKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (295)
Q Consensus 9 ~~~~~l~~~~~~~~~~~-~~~~~~~vI~i~s~kG---GvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~ 84 (295)
+.|..+|+.+.+..... ......|+|.|+|... |.||||+++|||..||+ .|+||+++ ...|+++..||++.
T Consensus 34 E~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~-~GkkVLLi---LR~Psl~~~FGikg 109 (557)
T 3pzx_A 34 ELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALAR-LGKRVMVC---LREPSLGPSFGIKG 109 (557)
T ss_dssp EEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHH-TTCCEEEE---ECCCCSHHHHHTCC
T ss_pred HHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHH-cCCeEEEE---eCCCCccccCCCCC
Confidence 44555555554432111 1233479999999999 99999999999999999 99999998 88999999999987
Q ss_pred Cc
Q 022525 85 KP 86 (295)
Q Consensus 85 ~~ 86 (295)
..
T Consensus 110 ga 111 (557)
T 3pzx_A 110 GA 111 (557)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 54
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.49 E-value=8.5e-06 Score=73.81 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=89.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
+.+|+|++. .|+||||+...||..+.. .+.+|++.+.|........-+. .+. ...++.++..
T Consensus 293 GeVI~LVGp-NGSGKTTLl~~LAgll~~-~~G~V~l~g~D~~r~aa~eQL~-----~~~--------~r~~I~vV~Q--- 354 (503)
T 2yhs_A 293 PFVILMVGV-NGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRAAAVEQLQ-----VWG--------QRNNIPVIAQ--- 354 (503)
T ss_dssp TEEEEEECC-TTSSHHHHHHHHHHHHHH-TTCCEEEECCCTTCHHHHHHHH-----HHH--------HHHTCCEECC---
T ss_pred CeEEEEECC-CcccHHHHHHHHHHHhhh-cCCeEEEecCcccchhhHHHHH-----HHH--------HhcCceEEec---
Confidence 689999855 899999999999999998 8999999988875421000000 000 0011111111
Q ss_pred cCCCCCCccCCchHHHHHHH-HHHhccCCCccEEEEcCCCCCCccchhhhh---h---------ccCceEEEeeCCCcch
Q 022525 111 VPSSSPVVWRGPMVMSALRK-MSREVDWGNLDILVIDMPPGTGDAQLTTTQ---T---------LQLSGALIVSTPQDVA 177 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~---l---------~~ad~viiv~~~~~~s 177 (295)
.... .....+.. +..... .+||+|||||++........... + ..-+.++++..+...
T Consensus 355 ---~~~~-----~p~~tV~e~l~~a~~-~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG- 424 (503)
T 2yhs_A 355 ---HTGA-----DSASVIFDAIQAAKA-RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG- 424 (503)
T ss_dssp ---STTC-----CHHHHHHHHHHHHHH-TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT-
T ss_pred ---ccCc-----CHHHHHHHHHHHHHh-cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc-
Confidence 0000 01112222 222233 78999999999765422111111 0 013466777665542
Q ss_pred HHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 178 LIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
++....++.+.+ ...+-++|+|+.+.... -..+..+...++.++.
T Consensus 425 -q~al~~ak~f~~-~~~itgvIlTKLD~tak----------gG~~lsi~~~~~~PI~ 469 (503)
T 2yhs_A 425 -QNAVSQAKLFHE-AVGLTGITLTKLDGTAK----------GGVIFSVADQFGIPIR 469 (503)
T ss_dssp -HHHHHHHHHHHH-HTCCSEEEEECGGGCSC----------CTHHHHHHHHHCCCEE
T ss_pred -HHHHHHHHHHHh-hcCCCEEEEEcCCCccc----------ccHHHHHHHHHCCCEE
Confidence 333344444432 12345799999884211 1346677777887765
No 55
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=98.48 E-value=1.9e-06 Score=74.53 Aligned_cols=167 Identities=17% Similarity=0.133 Sum_probs=111.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccccc
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (295)
++.|.+++.--.|||||++..|...+.+ +|.++..+- +..+-.+- .. .+ .+ .+.+.
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~-~G~~a~~~~-----tgqtg~~~-~~-~g-------i~-----~Dav~---- 207 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKL-RGWRSKFLA-----TGQTGVML-EG-DG-------VA-----LDAVR---- 207 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHH-TTCCEEEEC-----CSHHHHHH-HS-CS-------CC-----GGGSB----
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHh-cCCcEEEEe-----ccchhhhh-hc-CC-------cc-----hhHHH----
Confidence 6899999999999999999999999999 999998852 11111110 00 00 00 00000
Q ss_pred cCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccch--h--hhhhccCceEEEeeCCCcchH--------
Q 022525 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL--T--TTQTLQLSGALIVSTPQDVAL-------- 178 (295)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~--~--~~~l~~ad~viiv~~~~~~s~-------- 178 (295)
....+..+..+...+. ++||+|+|...+++..... + +..-...|.+|++..+....+
T Consensus 208 ----------~df~aG~ve~~~~~~~-~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~ 276 (349)
T 2obn_A 208 ----------VDFAAGAVEQMVMRYG-KNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPI 276 (349)
T ss_dssp ----------HHHHHHHHHHHHHHHT-TTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBC
T ss_pred ----------HHHHhhhHHHHHHHhc-cCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCC
Confidence 0112234555666666 7899999999988764321 1 112223477999988877666
Q ss_pred ---HHHHHHHHHHhc-----CCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEEEeecCC
Q 022525 179 ---IDARKGITMFSK-----VQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEIPIE 240 (295)
Q Consensus 179 ---~~~~~~~~~l~~-----~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~ 240 (295)
.....+++.+.. .+.++.|+++|.+... ....++..+++.+.+|+|++..+.+.
T Consensus 277 p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~--------~~~~~~~~~~ie~~~glPv~d~~r~g 338 (349)
T 2obn_A 277 PPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLD--------EYAAKEAIAHTIAETGLPCTDVVRFG 338 (349)
T ss_dssp CCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSC--------HHHHHHHHHHHHHHHCSCEECHHHHC
T ss_pred CCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCC--------HHHHHHHHHHHHHHHCCCEEEEecCC
Confidence 777777777755 6789999999987631 11123568888899999999877654
No 56
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.42 E-value=2.7e-06 Score=73.69 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=93.9
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeeccc
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (295)
..+.+|+++++ .|+||||+...||..+.. .|.+|++++.|.........+.. .....++.+++.
T Consensus 127 ~~g~vi~lvG~-nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~r~~a~eql~~-------------~~~~~gv~~v~q- 190 (328)
T 3e70_C 127 EKPYVIMFVGF-NGSGKTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEE-------------HAKRIGVKVIKH- 190 (328)
T ss_dssp CSSEEEEEECC-TTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHH-------------HHHHTTCEEECC-
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHHHh-cCCEEEEEeecccccchHHHHHH-------------HHHHcCceEEec-
Confidence 34789999865 899999999999999999 89999999999865332110000 000111212111
Q ss_pred cccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchh------hhhhccCceEEEeeCCCcchHHHHH
Q 022525 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT------TTQTLQLSGALIVSTPQDVALIDAR 182 (295)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~------~~~l~~ad~viiv~~~~~~s~~~~~ 182 (295)
..... ........+..... ..+|++++|+++........ +......|..+++.++... +++.
T Consensus 191 -----~~~~~----p~~~v~e~l~~~~~-~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~ 258 (328)
T 3e70_C 191 -----SYGAD----PAAVAYDAIQHAKA-RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIV 258 (328)
T ss_dssp -----CTTCC----HHHHHHHHHHHHHH-HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHH
T ss_pred -----cccCC----HHHHHHHHHHHHHh-ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHH
Confidence 00000 01111222222223 67999999999765421111 1122346777777765443 3444
Q ss_pred HHHHHHhcCCCCeeeEEeccccCCCCCCCCCccccCCchhhHHHHHhCCcEE
Q 022525 183 KGITMFSKVQVPILGLVENMSCFICPHCSEPSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 183 ~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
..++.+.+ ...+-++|+|+.+.... ....-.+....+.++.
T Consensus 259 ~~~~~~~~-~~~it~iilTKlD~~a~----------~G~~l~~~~~~~~pi~ 299 (328)
T 3e70_C 259 EQARQFNE-AVKIDGIILTKLDADAR----------GGAALSISYVIDAPIL 299 (328)
T ss_dssp HHHHHHHH-HSCCCEEEEECGGGCSC----------CHHHHHHHHHHTCCEE
T ss_pred HHHHHHHH-hcCCCEEEEeCcCCccc----------hhHHHHHHHHHCCCEE
Confidence 44444442 12445699999984211 1335567777787766
No 57
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.31 E-value=1.1e-05 Score=77.13 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=65.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..|++.|+|||+..+........+..+|.+|+|+.+.......+...+..+...+.+.+ +|+|+.|.....
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~~~~~-------- 150 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRMGAN-------- 150 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCccccc--------
Confidence 56999999999866543445566778999999999887666666777777777788876 899999843211
Q ss_pred CCchhhHHHHHhCCcEEE-eec
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIP 238 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip 238 (295)
.....+++.+.++..++. .+|
T Consensus 151 ~~~~~~~l~~~l~~~~~~~~~P 172 (704)
T 2rdo_7 151 FLKVVNQIKTRLGANPVPLQLA 172 (704)
T ss_pred HHHHHHHHHHHhCCCceeEEcc
Confidence 124567777777765543 555
No 58
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.21 E-value=7e-06 Score=75.75 Aligned_cols=89 Identities=12% Similarity=-0.048 Sum_probs=63.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..+.+.|+|||+..+........+..+|.+|+|+.+...........+..+...+.++ .+|+|+.+.... .
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi-ivviNK~Dl~~~-------~- 150 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKLDRDIR-------D- 150 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECTTSCCS-------C-
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCE-EEEEcCcCCccc-------c-
Confidence 5688999999976554344556677899999999987765566677777777778886 499999984211 0
Q ss_pred CCchhhHHHHHhCCcEEE
Q 022525 218 GKGGTHRTAAEMGLKVIG 235 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~ 235 (295)
.....+++.+.++.....
T Consensus 151 ~~~~~~~i~~~l~~~~~~ 168 (529)
T 2h5e_A 151 PMELLDEVENELKIGCAP 168 (529)
T ss_dssp HHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHhCCCccc
Confidence 113477888888887654
No 59
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.06 E-value=0.00037 Score=59.60 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=37.5
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+.+|++++ ..|+||||+...||..+.. .+.+|++.+.|...
T Consensus 101 ~g~vi~lvG-~nGsGKTTll~~Lagll~~-~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVVG-VNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEEC-STTSSHHHHHHHHHHHHHT-TTCCEEEECCCCSS
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHHh-cCCEEEEEeecCCC
Confidence 478999985 5899999999999999998 89999999999765
No 60
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.93 E-value=4.2e-05 Score=61.98 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=33.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.++|+|+ +.+|+||||+..+|+..+.. . .+|.+|+.|++.
T Consensus 30 ~~~i~i~-G~~g~GKTTl~~~l~~~~~~-~-~~~~~i~~d~~~ 69 (221)
T 2wsm_A 30 TVAVNIM-GAIGSGKTLLIERTIERIGN-E-VKIGAMLGDVVS 69 (221)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHTT-T-SCEEEEECSCCC
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhcc-C-CeEEEEecCCCC
Confidence 4667776 68999999999999998866 5 899999998853
No 61
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.92 E-value=0.00027 Score=61.66 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=35.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~ 75 (295)
..+|+++ +..|+||||+.-.|+..+.. .+.+|.++..|++...
T Consensus 74 ~~~v~lv-G~pgaGKSTLln~L~~~~~~-~~~~v~V~~~dp~~~~ 116 (349)
T 2www_A 74 AFRVGLS-GPPGAGKSTFIEYFGKMLTE-RGHKLSVLAVDPSSCT 116 (349)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC----
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhhh-cCCeEEEEeecCCCCC
Confidence 5677776 89999999999999999998 8999999999998643
No 62
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.74 E-value=0.00052 Score=52.16 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=52.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCFICPHCSE 212 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~ 212 (295)
..+++.++|+|+...........+..+|.++++..... .++..+...++.+.. .+.++ .+|+|+.|....
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~-iiv~nK~Dl~~~---- 123 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM-VLVGNKSDLAAR---- 123 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE-EEEEECTTCSCC----
T ss_pred EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEEchhhhhc----
Confidence 45789999999755433333445567898888887654 344555555554433 24555 499999985321
Q ss_pred CccccCCchhhHHHHHhCCcE
Q 022525 213 PSFIFGKGGTHRTAAEMGLKV 233 (295)
Q Consensus 213 ~~~~~~~~~~~~~~~~~g~~~ 233 (295)
.......+++.+.++.++
T Consensus 124 ---~~~~~~~~~~~~~~~~~~ 141 (166)
T 2ce2_X 124 ---TVESRQAQDLARSYGIPY 141 (166)
T ss_dssp ---CSCHHHHHHHHHHHTCCE
T ss_pred ---ccCHHHHHHHHHHcCCeE
Confidence 111234566666666543
No 63
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.72 E-value=0.00024 Score=56.33 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=32.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.++ ++.++| .||||.|..+|...+. +|++|+++-+..
T Consensus 29 g~i~-v~tG~G-kGKTTaA~GlalRA~g-~G~rV~~vQF~K 66 (196)
T 1g5t_A 29 GIII-VFTGNG-KGKTTAAFGTAARAVG-HGKNVGVVQFIK 66 (196)
T ss_dssp CCEE-EEESSS-SCHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred ceEE-EECCCC-CCHHHHHHHHHHHHHH-CCCeEEEEEeeC
Confidence 4444 445777 9999999999999999 999999997775
No 64
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.72 E-value=0.00034 Score=66.91 Aligned_cols=92 Identities=15% Similarity=0.041 Sum_probs=73.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
+.|-+=|||||+..+...-....|..+|.+|+|++....-...+...++++.+.+++++ +++|++|.... .
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i-~~iNKiDr~~a-------~- 153 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMDRQGA-------N- 153 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEE-EEEECSSSTTC-------C-
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEccccccCc-------c-
Confidence 46778899999988876667778889999999999998888899999999999999986 99999993211 1
Q ss_pred CCchhhHHHHHhCCcEEE-eec
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIP 238 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip 238 (295)
-...++++.+.++..+.. .+|
T Consensus 154 ~~~~~~ei~~~l~~~~~~~~~p 175 (709)
T 4fn5_A 154 FLRVVEQIKKRLGHTPVPVQLA 175 (709)
T ss_dssp HHHHHHHHHHHHCSCEEESEEE
T ss_pred HHHHHHHhhhhcccceeeeecc
Confidence 124578888888876654 444
No 65
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.69 E-value=6.3e-05 Score=58.47 Aligned_cols=41 Identities=22% Similarity=0.177 Sum_probs=35.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+++|+|++ ..|+||||++..|+..|.. +|.+|.+|..|+..
T Consensus 4 ~~~i~i~G-~sGsGKTTl~~~L~~~l~~-~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 4 MNVWQVVG-YKHSGKTTLMEKWVAAAVR-EGWRVGTVKHHGHG 44 (169)
T ss_dssp CCEEEEEC-CTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC--
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHhhHh-cCCeeeEEEeCCCC
Confidence 68899987 5599999999999999999 99999999999864
No 66
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.69 E-value=0.00021 Score=61.32 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=45.0
Q ss_pred CccEEEEcCCCCCCcc----------chhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDA----------QLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~----------~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+.++|+|||+..... ......+..+|.+++|+..+.. +.......++.+...+.+++ +|+|+.|.
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK~Dl 134 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINKIDK 134 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEECGGG
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEECccC
Confidence 6889999999644321 1223445679999999988764 33433333777777677765 99999984
No 67
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.68 E-value=0.00021 Score=68.03 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=63.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..+.+.|+|||+..+........+..+|.+|+|+++...........+..+...+.+++ +|+|+.|.... .
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~~~-------~- 143 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDKLGA-------N- 143 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTC-------C-
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCcccc-------c-
Confidence 46889999999766544445566778999999999877555556666777777777776 89999984311 0
Q ss_pred CCchhhHHHHHhCCcEEE-eec
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIP 238 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip 238 (295)
.....+++.+.++..... .+|
T Consensus 144 ~~~~~~~l~~~l~~~~~~~~ip 165 (693)
T 2xex_A 144 FEYSVSTLHDRLQANAAPIQLP 165 (693)
T ss_dssp HHHHHHHHHHHHCCCEEESEEE
T ss_pred hHHHHHHHHHHhCCCceeEEee
Confidence 113466777777765432 455
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.67 E-value=0.00051 Score=53.93 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=47.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCFICPHCSE 212 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~ 212 (295)
..+++.|+|+|+...........+..+|.++++..... .++..+...++.+.. .+.++ .+|+|+.|...
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ilv~nK~Dl~~----- 140 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM-VLVGNKCDLPT----- 140 (190)
T ss_dssp EEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE-EEEEECTTCSC-----
T ss_pred EEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeE-EEEEECCcCCc-----
Confidence 45789999999754322333344557888888877654 355555554444443 24555 49999998532
Q ss_pred CccccCCchhhHHHHHhCCc
Q 022525 213 PSFIFGKGGTHRTAAEMGLK 232 (295)
Q Consensus 213 ~~~~~~~~~~~~~~~~~g~~ 232 (295)
........+++.+.++.+
T Consensus 141 --~~~~~~~~~~~~~~~~~~ 158 (190)
T 3con_A 141 --RTVDTKQAHELAKSYGIP 158 (190)
T ss_dssp --CCSCHHHHHHHHHHHTCC
T ss_pred --ccCCHHHHHHHHHHcCCe
Confidence 111123456666666643
No 69
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.62 E-value=0.0031 Score=55.04 Aligned_cols=42 Identities=29% Similarity=0.296 Sum_probs=36.9
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+.+|++++ ..|+||||+...||..+.. .+.+|++.+.|...
T Consensus 156 ~g~vi~lvG-~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r 197 (359)
T 2og2_A 156 KPAVIMIVG-VNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFR 197 (359)
T ss_dssp SSEEEEEEC-CTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSC
T ss_pred CCeEEEEEc-CCCChHHHHHHHHHhhccc-cCCEEEEecccccc
Confidence 368999985 5999999999999999998 89999999888654
No 70
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.61 E-value=0.003 Score=53.82 Aligned_cols=42 Identities=29% Similarity=0.296 Sum_probs=36.8
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+.++++++ ..|+||||+...||..+.. .+.+|++.+.|...
T Consensus 99 ~g~vi~lvG-~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 99 KPAVIMIVG-VNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFR 140 (302)
T ss_dssp SCEEEEEEC-CTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSC
T ss_pred CCcEEEEEc-CCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccc
Confidence 368999985 5999999999999999998 89999999888654
No 71
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.60 E-value=0.00035 Score=66.59 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=64.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..+.+.|+|||+..+........+..+|.+|+|+++...........+..+...+.+++ +|+|+.|.....
T Consensus 75 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~-------- 145 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKTGAD-------- 145 (691)
T ss_dssp TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC--------
T ss_pred CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCcccCC--------
Confidence 46889999999765544455566778999999999887655666667777777788876 899999843110
Q ss_pred CCchhhHHHHHhCCcEEE-eec
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIP 238 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip 238 (295)
.....+++.+.++..... .+|
T Consensus 146 ~~~~~~~l~~~l~~~~~~~~~P 167 (691)
T 1dar_A 146 LWLVIRTMQERLGARPVVMQLP 167 (691)
T ss_dssp HHHHHHHHHHTTCCCEEECEEE
T ss_pred HHHHHHHHHHHhCCCccceecc
Confidence 123567777777765443 455
No 72
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.56 E-value=0.00081 Score=58.36 Aligned_cols=41 Identities=34% Similarity=0.384 Sum_probs=36.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+.+++++ +..|+||||+.-.|+..+.. .+.+|.++..|++.
T Consensus 55 g~~v~i~-G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 55 AIRVGIT-GVPGVGKSTTIDALGSLLTA-AGHKVAVLAVDPSS 95 (337)
T ss_dssp SEEEEEE-CCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhhhh-CCCEEEEEEEcCcc
Confidence 5788876 88899999999999999988 89999999999864
No 73
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.51 E-value=0.0035 Score=49.66 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=44.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...+. .++..+...+..+... +.++ .+|+|+.|.
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 141 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKADL 141 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCE-EEEEECTTC
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccC
Confidence 56788999999744332334455567898888887654 4566666666666543 4455 499999984
No 74
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.50 E-value=0.00026 Score=66.80 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=70.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
++|.+-|||||+..+...-....|..+|.+|+|+++...-...+...++.+.+.+++.+ +++|++|.....
T Consensus 65 ~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr~~a~-------- 135 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQNGID-------- 135 (638)
T ss_dssp SSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCSSSCC--------
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccccccCC--------
Confidence 56788999999988876667788889999999999988877788999999999999986 889999842111
Q ss_pred CCchhhHHHHHhCCcEE
Q 022525 218 GKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~ 234 (295)
-....+++.+.++..++
T Consensus 136 ~~~~~~~i~~~l~~~~~ 152 (638)
T 3j25_A 136 LSTVYQDIKEKLSAEIV 152 (638)
T ss_dssp SHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHhCCCcc
Confidence 12457788888876543
No 75
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.43 E-value=0.0011 Score=50.53 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=52.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc--CCCCeeeEEeccccCCCCCCCCCc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK--VQVPILGLVENMSCFICPHCSEPS 214 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~--~~~~~~~~ViN~~~~~~~~~~~~~ 214 (295)
..+.+.|+|+|+...........+..+|.++++...+.. ++..+...+..+.. .+.++ .+|+|+.|.....
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl~~~~----- 125 (168)
T 1z2a_A 52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPT-ALVQNKIDLLDDS----- 125 (168)
T ss_dssp EEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCE-EEEEECGGGGGGC-----
T ss_pred EEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECcccCccc-----
Confidence 357899999997433223334455678999998887653 45555555554433 34555 4999999853211
Q ss_pred cccCCchhhHHHHHhCCc
Q 022525 215 FIFGKGGTHRTAAEMGLK 232 (295)
Q Consensus 215 ~~~~~~~~~~~~~~~g~~ 232 (295)
.......+++.+.++.+
T Consensus 126 -~~~~~~~~~~~~~~~~~ 142 (168)
T 1z2a_A 126 -CIKNEEAEGLAKRLKLR 142 (168)
T ss_dssp -SSCHHHHHHHHHHHTCE
T ss_pred -ccCHHHHHHHHHHcCCe
Confidence 11123455666666653
No 76
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.42 E-value=0.00065 Score=60.50 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=51.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|||+...........+..+|.+|+|+++.......+.+.+..+...+.+.+.+++|+.|.
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccc
Confidence 56889999998654432334455667999999999877666677777777777888855689999984
No 77
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.42 E-value=0.0007 Score=56.36 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=57.9
Q ss_pred CCccEEEEcCCCCCCccc----------hhhhhh--ccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQ----------LTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~----------~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.++.+.|+|+|+..+... +....+ ..+|.+++|+.... .........++...+.+++ +|+||.|.
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvi-lv~NK~Dl 122 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVV-VALNMMDI 122 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEE-EEEECHHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 345789999997544321 122222 56899999988776 4455566777777777765 99999984
Q ss_pred CCCCCCCCccccCCchhhHHHHHhCCcEEEee
Q 022525 206 ICPHCSEPSFIFGKGGTHRTAAEMGLKVIGEI 237 (295)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~I 237 (295)
.... -.....+.+.+.+|.+++.+-
T Consensus 123 ~~~~-------~~~~~~~~l~~~lg~~vi~~S 147 (256)
T 3iby_A 123 AEHR-------GISIDTEKLESLLGCSVIPIQ 147 (256)
T ss_dssp HHHT-------TCEECHHHHHHHHCSCEEECB
T ss_pred CCcC-------CcHHHHHHHHHHcCCCEEEEE
Confidence 3111 011236678888898877533
No 78
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.41 E-value=0.014 Score=45.28 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=50.8
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCCC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCFICPHCSEP 213 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~~ 213 (295)
.+.+.|+|+|+...........+..+|.++++...+. .++..+...+..+.. .+.++ .+|+|+.|...
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl~~------ 123 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM-VLVGNKCDLPS------ 123 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE-EEEEECTTSSS------
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECccCcc------
Confidence 4668889999754433344444567888888877654 355555555555443 24555 49999998531
Q ss_pred ccccCCchhhHHHHHhCCcE
Q 022525 214 SFIFGKGGTHRTAAEMGLKV 233 (295)
Q Consensus 214 ~~~~~~~~~~~~~~~~g~~~ 233 (295)
........+++.+.++.++
T Consensus 124 -~~~~~~~~~~~~~~~~~~~ 142 (189)
T 4dsu_A 124 -RTVDTKQAQDLARSYGIPF 142 (189)
T ss_dssp -CSSCHHHHHHHHHHHTCCE
T ss_pred -cccCHHHHHHHHHHcCCeE
Confidence 1112234666666666543
No 79
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.38 E-value=0.00058 Score=59.91 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=34.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.|+ +..|+||||++.+++..+++ .|.+|++||++..
T Consensus 74 G~li~I~-G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIY-GPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred CcEEEEE-cCCCCChHHHHHHHHHHHHH-CCCeEEEEECCCC
Confidence 4666664 67889999999999999999 9999999999854
No 80
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.37 E-value=0.0015 Score=52.14 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=42.6
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +.+ +.+|+|+.|.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl 137 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDM 137 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence 4779999999643322333445667899999988764 3455555555555432 344 4599999985
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.36 E-value=0.0041 Score=48.68 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=42.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc----hHHHHHHHHHHHhc-----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV----ALIDARKGITMFSK-----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~----s~~~~~~~~~~l~~-----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+++|...... .........+++.. .+.++ .+|.|+.|.
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~pi-ilv~NK~Dl 147 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPI-VIQVNKRDL 147 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCE-EEEEECTTS
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCE-EEEEEchhc
Confidence 457799999997544334444556689999999988743 22222333344433 24444 599999984
No 82
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.36 E-value=0.00036 Score=64.58 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=75.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
++|.+=|||||+..+...-....|..+|.+|+|+.+...-...+...++.+.+.++|.+ +++|++|.... .
T Consensus 98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~Dr~~a-------d- 168 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMDREAL-------H- 168 (548)
T ss_dssp TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSCCC-------C-
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecccchhc-------c-
Confidence 67889999999988776667788889999999999999989999999999999999986 99999994211 1
Q ss_pred CCchhhHHHHHhCCcEEE-eec
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIP 238 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip 238 (295)
-...++++.+.++..+.. .+|
T Consensus 169 ~~~~~~~i~~~l~~~~~p~~~P 190 (548)
T 3vqt_A 169 PLDVMADIEQHLQIECAPMTWP 190 (548)
T ss_dssp HHHHHHHHHHHHTSEEEESEEE
T ss_pred hhHhhhhhhhhcCCceEeEEee
Confidence 125588999999987765 555
No 83
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.35 E-value=0.0027 Score=49.96 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=43.6
Q ss_pred ccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc-CCCCeeeEEecccc
Q 022525 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK-VQVPILGLVENMSC 204 (295)
Q Consensus 140 yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~-~~~~~~~~ViN~~~ 204 (295)
+.+.|+|+|+...........+..+|.+++|...... ++..+...+..+.. .+ ..+.+|+|+.|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCC
Confidence 8899999996433223344555688999999887654 45555555555554 34 45569999998
No 84
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.34 E-value=0.0023 Score=48.80 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=42.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...... ++..+...+..+... +.++ .+|+|+.+.
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl 120 (170)
T 1g16_A 50 KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQL-LLVGNKSDM 120 (170)
T ss_dssp CEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTC
T ss_pred EEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECccC
Confidence 356799999996433223334455678988888886543 555555555555432 4444 599999985
No 85
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.33 E-value=0.007 Score=47.37 Aligned_cols=88 Identities=13% Similarity=0.149 Sum_probs=52.9
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccCCCCCCCCCc
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCFICPHCSEPS 214 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~~~~~~~~~~ 214 (295)
.+.+.|+|+|+...........+..+|.++++..... .++..+...+..+... +.++ .+|.|+.|.....
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ilv~nK~Dl~~~~----- 137 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK-LLVGNKCDLTTKK----- 137 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTCTTTC-----
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECccccccc-----
Confidence 4679999999754332334455667899999887655 3455555555555432 4444 5899999853211
Q ss_pred cccCCchhhHHHHHhCCcE
Q 022525 215 FIFGKGGTHRTAAEMGLKV 233 (295)
Q Consensus 215 ~~~~~~~~~~~~~~~g~~~ 233 (295)
.......+++.+.++.++
T Consensus 138 -~~~~~~~~~~~~~~~~~~ 155 (196)
T 3tkl_A 138 -VVDYTTAKEFADSLGIPF 155 (196)
T ss_dssp -CSCHHHHHHHHHHTTCCE
T ss_pred -ccCHHHHHHHHHHcCCcE
Confidence 111234566667666543
No 86
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.28 E-value=0.01 Score=45.86 Aligned_cols=116 Identities=12% Similarity=0.114 Sum_probs=62.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCFICPHCSE 212 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~ 212 (295)
..+.+.|+|+|+...........+..+|.++++..... .++..+...+..+.+ .+.++ .+|.|+.|....
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~---- 126 (181)
T 3t5g_A 52 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHME---- 126 (181)
T ss_dssp EEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCE-EEEEECTTCTTT----
T ss_pred EEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccchhc----
Confidence 34778999999744322333344556898888877654 455555555544432 24555 499999985311
Q ss_pred CccccCCchhhHHHHHhCCcEEEeecCCccccccccCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 022525 213 PSFIFGKGGTHRTAAEMGLKVIGEIPIEMDIRKGSDDGVPVVISAPDSTVSRAYGEVAVNVVNRLQELAK 282 (295)
Q Consensus 213 ~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~i~~~~~~s~~~~~~~~l~~~l~~~~~~~~~ 282 (295)
........+++.+.++.+ +++... .....+.++...|...+.....
T Consensus 127 --~~~~~~~~~~~~~~~~~~--------------------~~~~Sa--~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 127 --RVISYEEGKALAESWNAA--------------------FLESSA--KENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp --CCSCHHHHHHHHHHTTCE--------------------EEECCT--TSHHHHHHHHHHHHHHHHTC--
T ss_pred --ceecHHHHHHHHHHhCCc--------------------EEEEec--CCCCCHHHHHHHHHHHHHHhcC
Confidence 111223455566655543 233222 2234566666666666655443
No 87
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.26 E-value=0.005 Score=47.52 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=52.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcCC--CCeeeEEeccccCCCCCCCCCc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQ--VPILGLVENMSCFICPHCSEPS 214 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~--~~~~~~ViN~~~~~~~~~~~~~ 214 (295)
..+.+.|+|+|+...........+..+|.++++..... .++..+...+..+.... ...+.+|+|+.|.....
T Consensus 59 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~----- 133 (181)
T 2efe_B 59 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR----- 133 (181)
T ss_dssp EEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC-----
T ss_pred EEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc-----
Confidence 35779999999754332333445567899999888754 35566666666655432 22345999999853211
Q ss_pred cccCCchhhHHHHHhCCc
Q 022525 215 FIFGKGGTHRTAAEMGLK 232 (295)
Q Consensus 215 ~~~~~~~~~~~~~~~g~~ 232 (295)
.......+++.+..+.+
T Consensus 134 -~~~~~~~~~~~~~~~~~ 150 (181)
T 2efe_B 134 -KVTAEDAQTYAQENGLF 150 (181)
T ss_dssp -CSCHHHHHHHHHHTTCE
T ss_pred -cCCHHHHHHHHHHcCCE
Confidence 11123455566655543
No 88
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.26 E-value=0.0025 Score=49.49 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=42.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.++ .+|+|+.|.
T Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 135 (187)
T 2a9k_A 64 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDL 135 (187)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCE-EEEEECGGG
T ss_pred EEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 34689999999754433333444567899888887664 344555444444432 24555 499999985
No 89
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.25 E-value=0.00084 Score=59.64 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=50.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|||+...........+..+|.+|+|+.+.......+...+..+...+.+.+.+++|+.|.
T Consensus 64 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADA 131 (397)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECccc
Confidence 56889999999643322223444567999999999887666667777777777888865689999985
No 90
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.24 E-value=0.0023 Score=48.57 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=41.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...+. .++..+...+..+.. .+.++ .+|+|+.|.
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 121 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDL 121 (168)
T ss_dssp EEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCE-EEEEECGGG
T ss_pred EEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECccc
Confidence 34689999999754432333444557898888887664 345555554444433 24555 499999985
No 91
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.23 E-value=0.0038 Score=49.06 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=45.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcC-----------CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKV-----------QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~-----------~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+|+|...... ++..+...+..+.+. +.++ .+|.|+.|.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 139 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPF-LFFANKMDA 139 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCE-EEEEECcCC
Confidence 567899999996543323333445678999998887654 577776666655443 5555 499999984
No 92
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.20 E-value=0.0014 Score=50.61 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=44.7
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+...+.|+|+|+...........+..+|.++++...+..........+..+...+.+++ +|+|+.|.
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~i-lv~nK~Dl 119 (178)
T 2lkc_A 53 NDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPII-VAINKMDK 119 (178)
T ss_dssp TTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEE-EEEETTTS
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEE-EEEECccC
Confidence 34567899999644322233344556888999987766555555666666666666754 99999984
No 93
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=97.17 E-value=0.0059 Score=52.86 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=82.3
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCCccccccCcccccccCCceeecccc
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (295)
..++|.+++.--++||||++..|...+.+ +|.++..+-....+ .+.+.+ .++. .....
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~-~G~~v~~v~tgqtg----~li~~~--~gv~-------~D~~~-------- 225 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALE-KGIKAGFLATGQTG----ILIGAD--AGYV-------IDAVP-------- 225 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHH-TTCCEEEEECSHHH----HHTTCS--EECC-------GGGSB--------
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHh-cCCeEEEEccCcee----eeeccC--CCCC-------CCcee--------
Confidence 36899999999999999999999999999 99999886322111 111100 0000 00000
Q ss_pred ccCCCCCCccCCchHHHHHHHHHHhc-cCCCccEEEEcCCCCCCccchh---hhhh--ccCceEEEeeCCC---------
Q 022525 110 LVPSSSPVVWRGPMVMSALRKMSREV-DWGNLDILVIDMPPGTGDAQLT---TTQT--LQLSGALIVSTPQ--------- 174 (295)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~yD~iiiD~~~~~~~~~~~---~~~l--~~ad~viiv~~~~--------- 174 (295)
..........++... + ++||++|+..++++...... ...+ ...|.+|+.-.|.
T Consensus 226 -----------~~~~ag~~e~~i~~~~~-~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~ 293 (350)
T 2g0t_A 226 -----------ADFVSGVVEKAVLKLEK-TGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPE 293 (350)
T ss_dssp -----------GGGHHHHHHHHHHHHHH-TTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTT
T ss_pred -----------cchhhHHHHhhHHHhhh-cCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCc
Confidence 011112222333333 4 79999999999888754322 1111 2357777755443
Q ss_pred --c-chHHHHHHHHHHHhcCCCCeeeEE-ecc
Q 022525 175 --D-VALIDARKGITMFSKVQVPILGLV-ENM 202 (295)
Q Consensus 175 --~-~s~~~~~~~~~~l~~~~~~~~~~V-iN~ 202 (295)
. .++.....+++.+. +.+++|++ +|.
T Consensus 294 ~~~~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 294 IPKKPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp SSCCCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred ccCCcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 1 35566666666654 67889999 895
No 94
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.17 E-value=0.0057 Score=48.52 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=44.7
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCFI 206 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~~ 206 (295)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +.+ +.+|+|+.|..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 126 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 34789999999754332334455667899999888755 3566666655555432 334 45999999853
No 95
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.16 E-value=0.0019 Score=52.20 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=32.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
...|+++ +.+|+||||+..+|+..+.. . .++..|+.|++
T Consensus 38 ~~~i~iv-G~~gvGKTtl~~~l~~~~~~-~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFM-GAIGSGKTLLIEKLIDNLKD-K-YKIACIAGDVI 76 (226)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHTT-T-CCEEEEEEETT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHhcc-C-CeEEEEECCCC
Confidence 4667776 55999999999999988766 4 78999999875
No 96
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.16 E-value=0.003 Score=48.23 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=42.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc-----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK-----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~-----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...+.. ++..+...+..+.+ .+.++ .+|+|+.|.
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pi-i~v~nK~Dl 121 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI-MLVGNKCDE 121 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCE-EEEEECGGG
T ss_pred EEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCE-EEEEEcccc
Confidence 346799999997554333344445678999888876543 45555555544443 24555 599999985
No 97
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.15 E-value=0.00095 Score=56.96 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=42.9
Q ss_pred CCccEEEEcCCCCCCc--------cchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcC--CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGD--------AQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~--------~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
..+.++|+|||+-... .......+..+|.+++|.+.+..--......++.+.+. +.+.+ +|+|+.|.
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~i-lV~NK~Dl 129 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPIL-LVGNKLDA 129 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEE-EEEECGGG
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEE-EEEECccc
Confidence 4677999999964331 11233456679999999887653222234455666655 55654 99999984
No 98
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.12 E-value=0.00097 Score=52.85 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=42.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+|+|..... .++..+...++.+.. .+.++ .+|+|+.|.
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~NK~Dl 145 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPI-MLVGNKADI 145 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCE-EEEEECGGG
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCE-EEEEECccc
Confidence 34678999999754433333444567899999988654 455555555555543 24555 499999984
No 99
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.11 E-value=0.0043 Score=48.62 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=43.0
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +.++ .+|+|+.|.
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~pi-ilv~nK~Dl 138 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVI-MLIGNKSDL 138 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTC
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECccc
Confidence 4678999999643322333445667899998888654 4556556555555432 4444 599999985
No 100
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.11 E-value=0.0074 Score=45.62 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=41.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++..... .++..+...+..+.+ .+.++ .+|+|+.|.
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 120 (167)
T 1kao_A 49 SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV-ILVGNKVDL 120 (167)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCE-EEEEECGGG
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECCcc
Confidence 34668999999754432333344556888888877654 355555555444432 34555 599999985
No 101
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.11 E-value=0.0032 Score=49.53 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=42.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc-----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK-----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~-----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...+. .++..+...+..+.. .+.++ .+|+|+.|.
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pi-ilv~nK~Dl 126 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV-MLVGNKCDE 126 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCE-EEEEECTTC
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccC
Confidence 45679999999644332333444567899888887654 345555544444433 24454 599999985
No 102
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.10 E-value=0.0055 Score=46.70 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=48.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc---CCCCeeeEEeccccCCCCCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPILGLVENMSCFICPHCSEP 213 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~~~~~~~~~ 213 (295)
..+.+.|+|+|+...........+..+|.++++..... .++..+...++.+.. .+.++ .+|.|+.+.....
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~---- 127 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICL-CIVGNKIDLEKER---- 127 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEE-EEEEECGGGGGGC----
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEECccccccc----
Confidence 45678999999643322233333457898888887654 355555555554443 33444 5999999853211
Q ss_pred ccccCCchhhHHHHHhCCcE
Q 022525 214 SFIFGKGGTHRTAAEMGLKV 233 (295)
Q Consensus 214 ~~~~~~~~~~~~~~~~g~~~ 233 (295)
.......+++.+..+.++
T Consensus 128 --~~~~~~~~~~~~~~~~~~ 145 (170)
T 1z08_A 128 --HVSIQEAESYAESVGAKH 145 (170)
T ss_dssp --CSCHHHHHHHHHHTTCEE
T ss_pred --ccCHHHHHHHHHHcCCeE
Confidence 111234556666666443
No 103
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0071 Score=48.75 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=42.3
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.+|+|..... .++..+...+..+... +.+ +.+|+|+.|.
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl 130 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDL 130 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccc
Confidence 4778999999754332333445567898998887654 3566666555555442 344 4589999985
No 104
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.09 E-value=0.0021 Score=57.71 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=50.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHH-------HHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI-------DARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
..+.+.|+|||+...........+..+|.+|+|++....+++ .+.+.+..+...+.+.+.+++|+.|..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 568899999997655333345556688999999998886555 445555566667776556999999953
No 105
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.0044 Score=48.47 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=44.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...++.+... ....+.+|+|+.|.
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 45779999999754322334455667899999887654 3555666666666542 12344599999985
No 106
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.05 E-value=0.0062 Score=46.76 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=43.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...... ++..+...+..+.. .+.+ +.+|+|+.|.
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 132 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADL 132 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTC
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccc
Confidence 356799999996443223344556678999988887643 45555555444443 3444 4599999985
No 107
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.05 E-value=0.0059 Score=48.26 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=42.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...+. .++..+...+..+.. .+.++ .+|+|+.|.
T Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 131 (206)
T 2bov_A 60 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDL 131 (206)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE-EEEEECTTC
T ss_pred EEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEeccCc
Confidence 34679999999754433333444557898888877654 455555555554443 24555 499999985
No 108
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.04 E-value=0.002 Score=61.13 Aligned_cols=90 Identities=10% Similarity=0.085 Sum_probs=61.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..+.+.|+|||+..+........+..+|.+++|..+.......+...+..+...+.+++ +|+|+.+.. . .
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~~-~--------~ 141 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDKG-G--------D 141 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGGC-C--------C
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCchh-h--------h
Confidence 35778999999655433344556678999999998876655666777777777788876 889999843 1 1
Q ss_pred CCchhhHHHHHhCCcEEE-eec
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIP 238 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip 238 (295)
.....+++.+.++ .+.. .+|
T Consensus 142 ~~~~~~~l~~~l~-~~~~~~~P 162 (665)
T 2dy1_A 142 YYALLEDLRSTLG-PILPIDLP 162 (665)
T ss_dssp HHHHHHHHHHHHC-SEEECEEE
T ss_pred HHHHHHHHHHHhC-CcceEEee
Confidence 1245677777777 4332 444
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.00 E-value=0.0031 Score=51.21 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=31.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
+. +.++.+.-|+||||.+..++..++. +|.+|+++-
T Consensus 12 G~-i~litG~mGsGKTT~ll~~~~r~~~-~g~kVli~~ 47 (223)
T 2b8t_A 12 GW-IEFITGPMFAGKTAELIRRLHRLEY-ADVKYLVFK 47 (223)
T ss_dssp CE-EEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred cE-EEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEE
Confidence 44 4455688999999999999999999 999999994
No 110
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.99 E-value=0.00091 Score=58.43 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=34.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.|+ +++|+||||++.+++..+++ .|.+|++||++..
T Consensus 63 G~ii~I~-G~pGsGKTtLal~la~~~~~-~g~~vlyid~E~s 102 (356)
T 1u94_A 63 GRIVEIY-GPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHA 102 (356)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 4555554 79999999999999999999 9999999999743
No 111
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.99 E-value=0.0012 Score=51.79 Aligned_cols=39 Identities=36% Similarity=0.389 Sum_probs=34.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+|.+. +..|+||||++..|+..+.. .|.+|.++|.|.
T Consensus 13 ~~~i~l~-G~~GsGKsT~~~~L~~~l~~-~~~~~~~~~~d~ 51 (186)
T 2yvu_A 13 GIVVWLT-GLPGSGKTTIATRLADLLQK-EGYRVEVLDGDW 51 (186)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHh-cCCeEEEeeHHH
Confidence 5666665 88999999999999999999 999999998774
No 112
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.98 E-value=0.005 Score=51.66 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=55.3
Q ss_pred CCccEEEEcCCCCCCccch----------h--hhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQL----------T--TTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~----------~--~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|||+..+.... . ......+|.+++|+.... .........++...+.+++ +|+||.|.
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~i-vv~NK~Dl 124 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCI-VALNMLDI 124 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEE-EEEECHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 3467899999975442210 0 111247899999988776 4445556666666777775 99999984
Q ss_pred CCCCCCCCccccCCchhhHHHHHhCCcEEE
Q 022525 206 ICPHCSEPSFIFGKGGTHRTAAEMGLKVIG 235 (295)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 235 (295)
.... . .....+.+.+.+|.+++.
T Consensus 125 ~~~~------~-~~~~~~~l~~~lg~~~i~ 147 (274)
T 3i8s_A 125 AEKQ------N-IRIEIDALSARLGCPVIP 147 (274)
T ss_dssp HHHT------T-EEECHHHHHHHHTSCEEE
T ss_pred hhhh------h-HHHHHHHHHHhcCCCEEE
Confidence 2111 0 012367778888887764
No 113
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.98 E-value=0.013 Score=45.28 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=52.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc----CCCCeeeEEeccccCCCCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPILGLVENMSCFICPHCSE 212 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~~~~~~~~ 212 (295)
..+.+.|+|+|+...........+..+|.++++...... ++..+...+..+.+ .+.+++ +|.|+.|....
T Consensus 64 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~---- 138 (183)
T 3kkq_A 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI-LVANKVDLMHL---- 138 (183)
T ss_dssp EEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE-EEEECTTCSTT----
T ss_pred cEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECCCchhc----
Confidence 345577899997443223334445678999888876653 45555554444432 455554 99999985321
Q ss_pred CccccCCchhhHHHHHhCCcEE
Q 022525 213 PSFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 213 ~~~~~~~~~~~~~~~~~g~~~~ 234 (295)
........+++.+.++.+++
T Consensus 139 --~~v~~~~~~~~~~~~~~~~~ 158 (183)
T 3kkq_A 139 --RKVTRDQGKEMATKYNIPYI 158 (183)
T ss_dssp --CCSCHHHHHHHHHHHTCCEE
T ss_pred --cCcCHHHHHHHHHHhCCeEE
Confidence 11222446667777765433
No 114
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.97 E-value=0.00079 Score=59.91 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=50.2
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch-HHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-LIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|||+...........+..+|.+++++..+... ...+...+..+...+.+.+.+|+|+.|.
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 377999999975543334455566899999999888764 7777777777777776556699999984
No 115
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=96.96 E-value=0.0016 Score=59.74 Aligned_cols=168 Identities=16% Similarity=0.095 Sum_probs=90.5
Q ss_pred CeEEEEe-eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC------CCccc---ccccCCCccccccCcccccccC
Q 022525 31 KDVIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG------PSVPM---MMKIDQKPEVTKDMKMVPIENY 100 (295)
Q Consensus 31 ~~vI~i~-s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~------~~~~~---~~g~~~~~~~~~~~~~~~~~~~ 100 (295)
+|-|.|+ +.-.|+||+++++.|+..|++ +|.+|..+-.||-- .+... .|-.+.... .+...-.+....
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~-~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e-~~~~~~~~~~~~ 80 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEA-RGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAE-TDLDLGHYERFI 80 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHT-TTCCEEEEEEECCSCSCGGGSCTTTSCCCEECTTSCE-ECTHHHHHHHHC
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHh-CCceeeeeeccccccCCCCccCcccCCCeEECCCCCe-ehhhhccceeee
Confidence 5888888 899999999999999999999 99999999997432 22110 000000000 000000011111
Q ss_pred Cceeecc-----cc----cc----CCCCC--CccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCCccchhhhhhc---
Q 022525 101 GVKCMSM-----GF----LV----PSSSP--VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL--- 162 (295)
Q Consensus 101 ~~~~~~~-----~~----~~----~~~~~--~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~~~~~~~~~l~--- 162 (295)
++.+-+. |. .. ....- ...--....+.+++.+..+. ..||+||+..++..++- .++..+.
T Consensus 81 ~~~l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~-~~~d~~i~e~~gt~~di-~~~~~~~~~~ 158 (545)
T 1s1m_A 81 RTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGG-EGHDVVLVEIGGTVGDI-ESLPFLEAIR 158 (545)
T ss_dssp SSCCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHH-TTCSEEEEEECSCTTSS-TTHHHHHHHH
T ss_pred ceeecCCCCeeccEEeeehhhhccccccccCceeehhHHHHHHHHHHHHHh-ccCCEEEEECCCChhhh-hChHHHHHHH
Confidence 2111111 10 00 00000 00001123455677788888 89999999999877642 2111111
Q ss_pred ------cC------ceEEEeeC--CCcchHHHHHHHHHHHhcCCCCeeeEEecc
Q 022525 163 ------QL------SGALIVST--PQDVALIDARKGITMFSKVQVPILGLVENM 202 (295)
Q Consensus 163 ------~a------d~viiv~~--~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~ 202 (295)
.. ...++|.. ....--..+..-.+.++..++.+-++|+--
T Consensus 159 q~~~~~~~~~~~~~h~~~~p~~~~~ge~ktkptq~sv~~l~s~gi~pd~lv~R~ 212 (545)
T 1s1m_A 159 QMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRS 212 (545)
T ss_dssp HHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHTTTCCCSEEEEEE
T ss_pred HHhHhhCcCcEEEEEEeCcccccCCCCcCCCCCcCCHHHHhCCCCccCEEEEeC
Confidence 11 12233322 233445667778888888888776666553
No 116
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.95 E-value=0.0071 Score=45.83 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=42.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.++|+|+...........+..+|.++++...+. .++..+...++.+.+ .+.++ .+|+|+.|.
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 120 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM-ILVGNKCDL 120 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCE-EEEEECTTC
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcE-EEEEECccc
Confidence 45779999999754332333444557898888886654 455555555544433 35555 499999985
No 117
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.95 E-value=0.0014 Score=51.48 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=53.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhc---CCCCeeeEEeccccCCCCCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSK---VQVPILGLVENMSCFICPHCSEP 213 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~~~~~~~~~ 213 (295)
..+.+.|+|+|+...........+..+|.+++|.... ..++..+...++.+.. .+.+ +.+|.|+.|....
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~----- 143 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEE----- 143 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG-----
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccc-----
Confidence 4577999999863322233344566789998888776 3456666666666654 3444 4599999984211
Q ss_pred ccccCCchhhHHHHHhCCc
Q 022525 214 SFIFGKGGTHRTAAEMGLK 232 (295)
Q Consensus 214 ~~~~~~~~~~~~~~~~g~~ 232 (295)
........+.+.+.++.+
T Consensus 144 -~~~~~~~~~~~~~~~~~~ 161 (191)
T 3dz8_A 144 -RVVPTEKGQLLAEQLGFD 161 (191)
T ss_dssp -CCSCHHHHHHHHHHHTCE
T ss_pred -cccCHHHHHHHHHHcCCe
Confidence 111223455666666654
No 118
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.94 E-value=0.0061 Score=50.95 Aligned_cols=88 Identities=15% Similarity=0.085 Sum_probs=53.4
Q ss_pred CCccEEEEcCCCCCCccc------hhhhhh--ccCceEEEeeCCCcchHHHHHHHHHHHhcCC-CCeeeEEeccccCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQ------LTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQ-VPILGLVENMSCFICP 208 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~------~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~-~~~~~~ViN~~~~~~~ 208 (295)
..+.+.|+|+|+..+... .....+ ..+|.++++...... .........+...+ .+++ +|+||.+....
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~~ 124 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNII-LVLNKFDLLKK 124 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEE-EEEECHHHHHH
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEE-EEEEChhcCcc
Confidence 456689999997554222 111111 358999999877663 34444444555566 6654 99999984211
Q ss_pred CCCCCccccCCchhhHHHHHhCCcEEE
Q 022525 209 HCSEPSFIFGKGGTHRTAAEMGLKVIG 235 (295)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~g~~~~~ 235 (295)
. . .......+.+.+|.+++.
T Consensus 125 ~------~-~~~~~~~l~~~lg~~~~~ 144 (271)
T 3k53_A 125 K------G-AKIDIKKMRKELGVPVIP 144 (271)
T ss_dssp H------T-CCCCHHHHHHHHSSCEEE
T ss_pred c------c-cHHHHHHHHHHcCCcEEE
Confidence 1 0 112377888889988775
No 119
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=96.90 E-value=0.021 Score=52.38 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=38.0
Q ss_pred CCeEEEEe-eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 30 VKDVIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 30 ~~~vI~i~-s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
|+|.|.|+ +.-.|+||+.+++.|+..|++ +|.+|..+-.||
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~-~g~~v~~~k~~p 52 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLRA-RGYRVTAIKIDP 52 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHHT-TTCCEEEEEEEC
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHHh-CCceeeEeeccc
Confidence 46889999 889999999999999999999 999999999975
No 120
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.90 E-value=0.013 Score=45.99 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=43.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
+++.+.++|+|+...........+..+|.++++.+.... ++......+..+.+ .+.++ .+|.|+.|.
T Consensus 65 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 136 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF-VILGNKIDA 136 (190)
T ss_dssp TTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCE-EEEEECCCC
Confidence 347789999996433222223345578999888887654 67777666665543 34454 599999984
No 121
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.89 E-value=0.0026 Score=58.05 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=47.3
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
.+.+.|+|||+...........+..+|.+++++..+......+...+..+...+.|+ .+++|+.|..
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPi-IVviNKiDl~ 116 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPV-VVAVNKIDKP 116 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCE-EEEEECSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceE-EEEEEecccc
Confidence 456789999976543333344456789999998877655555566666777778885 4999999964
No 122
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.01 Score=46.65 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=43.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+... .......+..+|.++++...+. .++..+...+..+.. .+.++ .+|.|+.|.
T Consensus 74 ~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl 144 (196)
T 2atv_A 74 EVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL-ILVGNKADL 144 (196)
T ss_dssp EEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCE-EEEEECGGG
T ss_pred EEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcE-EEEEECccc
Confidence 457789999996544 2334455567899999888764 455555554444433 35555 499999985
No 123
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.88 E-value=0.0087 Score=47.41 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=43.3
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.+|+|..... .++..+...++.+.. .+.++ .+|.|+.|.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~NK~Dl 146 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ-LLIGNKSDL 146 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTC
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCcc
Confidence 4779999999654322333444567899999988654 456666555555544 23444 589999985
No 124
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0097 Score=46.52 Aligned_cols=66 Identities=11% Similarity=0.047 Sum_probs=37.5
Q ss_pred CccEEEEcCCCCCCccchhhhhh----ccCceEEEeeCCC--cchHHHHHHHHHHHhc-------CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQT----LQLSGALIVSTPQ--DVALIDARKGITMFSK-------VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l----~~ad~viiv~~~~--~~s~~~~~~~~~~l~~-------~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+ ..+|.+++|.... ..++......+..+.. .+.++ .+|+|+.|.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 168 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI-LIACNKSEL 168 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCE-EEEEECTTS
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCE-EEEEEchHh
Confidence 46788999996432211111112 2378888888775 3455554443333321 24555 499999985
No 125
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.88 E-value=0.014 Score=44.72 Aligned_cols=66 Identities=12% Similarity=0.025 Sum_probs=40.2
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc-------CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK-------VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~-------~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.++++...+.. ++..+...++.+.. .+.++ .+|+|+.+.
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl 128 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF-VILGNKIDI 128 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCE-EEEEECTTC
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcE-EEEEECCcc
Confidence 46799999996443222333445568888888776543 44444444444332 34454 599999985
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.87 E-value=0.0014 Score=59.36 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=41.0
Q ss_pred CCccEEEEcCCCCCCcc---------chhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDA---------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~---------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
....+.|+|||+ +... ......+..+|.+|+++.....-...-....+.+++.+.+++ +|+|+.+.
T Consensus 69 ~~~~~~liDT~G-~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvi-lV~NK~D~ 143 (456)
T 4dcu_A 69 LNYDFNLIDTGG-IDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDN 143 (456)
T ss_dssp CSSCCEEECCCC-------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEE-EEEECC--
T ss_pred CCceEEEEECCC-CCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 456789999985 2210 112233456899999988765433444566677776676665 89999984
No 127
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.86 E-value=0.0049 Score=57.53 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=48.2
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
.+.+.|+|||+...........+..+|.+|+|.+.+..-...+...+..+...+.|++ +++|+.|..
T Consensus 69 ~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiI-VViNKiDl~ 135 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFV-VAANKIDRI 135 (594)
T ss_dssp CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEE-EEEECGGGS
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEE-EEecccccc
Confidence 3469999999765433333344556899999998877544556666777777788865 999999964
No 128
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.84 E-value=0.012 Score=44.61 Aligned_cols=67 Identities=21% Similarity=0.153 Sum_probs=36.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
..+.+.++|+|+...........+..+|.++++...+ ..++..+...+..+.+. +.++ .+|.|+.|.
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 118 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI-ILVGNKSDL 118 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCE-EEEEECTTC
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEecccc
Confidence 4567889999864432223334455788888887654 44566666666666543 4455 499999985
No 129
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.84 E-value=0.0025 Score=48.21 Aligned_cols=66 Identities=9% Similarity=-0.065 Sum_probs=39.8
Q ss_pred CccEEEEcCCCCCCc-------cchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGD-------AQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~-------~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
...+.|+|+|+.... .......+..+|.++++.......-.......+++...+.++ .+|.|+.|.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 120 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPV-ILVATKVDD 120 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCE-EEEEECCCS
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCE-EEEEECccc
Confidence 456889999864431 011223355788888888876532222234455555556665 499999984
No 130
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.83 E-value=0.015 Score=44.16 Aligned_cols=68 Identities=10% Similarity=0.013 Sum_probs=43.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcCC--CCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQ--VPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~--~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...+. .++..+...++.+.... ..++.+|.|+.|.
T Consensus 53 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl 123 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 123 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTC
T ss_pred eEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcc
Confidence 35779999999643322333444567898888887654 35566655556555432 2334588899985
No 131
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.80 E-value=0.0055 Score=46.57 Aligned_cols=68 Identities=10% Similarity=0.087 Sum_probs=43.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcCC--CCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQ--VPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~--~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...+. .++..+...+..+.+.. ..++.+|.|+.|.
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl 123 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence 35779999999754332333444567899999888754 35666666655554421 2234478899985
No 132
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.80 E-value=0.047 Score=41.94 Aligned_cols=68 Identities=18% Similarity=0.090 Sum_probs=42.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
+.+.+.|+|+|+...........+..+|.++++.+... .++..+...+..+.+. ....+.+|+|+.|.
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 60 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 34678999999654322333444557898888887643 4677776666665432 22345599999984
No 133
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.79 E-value=0.0048 Score=57.55 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=48.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..|.+.|+|||+..+........+..+|.+|+|++........+...+..+...+.+++ +|+|+.|.
T Consensus 71 ~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiI-vviNKiDl 137 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVII-PVINKIDL 137 (600)
T ss_dssp CEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEE-EEEECTTS
T ss_pred CeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEE-EEEeccCc
Confidence 45889999999766543344455678999999998876544455555555556777754 99999984
No 134
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.79 E-value=0.0015 Score=54.43 Aligned_cols=39 Identities=38% Similarity=0.466 Sum_probs=32.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+|.+. +-.|+||||++..|+..|.. .|..++++|.|.
T Consensus 4 ~~lIvl~-G~pGSGKSTla~~La~~L~~-~g~~~i~~~~D~ 42 (260)
T 3a4m_A 4 IMLIILT-GLPGVGKSTFSKNLAKILSK-NNIDVIVLGSDL 42 (260)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHH-TTCCEEEECTHH
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHh-CCCEEEEECchH
Confidence 4666665 66999999999999999998 999998887763
No 135
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.76 E-value=0.0036 Score=50.31 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=41.9
Q ss_pred CCccEEEEcCCCCCCcc-----------ch---hhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccc
Q 022525 138 GNLDILVIDMPPGTGDA-----------QL---TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMS 203 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~-----------~~---~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~ 203 (295)
..+.+.|+|||+ +... .. .+.....+|.+++++.....--......++++...+.+++ +|+|+.
T Consensus 77 ~~~~~~l~DtpG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~ 154 (223)
T 4dhe_A 77 AEPVAHLVDLPG-YGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIH-SLLTKC 154 (223)
T ss_dssp TSCSEEEEECCC-CCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEE-EEEECG
T ss_pred CCCcEEEEcCCC-CCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEecc
Confidence 568899999995 3321 01 1111223677888887765433445566777777677765 999999
Q ss_pred cC
Q 022525 204 CF 205 (295)
Q Consensus 204 ~~ 205 (295)
|.
T Consensus 155 Dl 156 (223)
T 4dhe_A 155 DK 156 (223)
T ss_dssp GG
T ss_pred cc
Confidence 84
No 136
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.76 E-value=0.0046 Score=47.16 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=48.8
Q ss_pred CCccEEEEcCCCCCCccc-hhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC----CCCeeeEEeccccCCCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQ-LTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPILGLVENMSCFICPHCS 211 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~-~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~~~~~~~ 211 (295)
..+.+.++|+|+...... +....+..+|.++++...+. .++..+...+..+... +.++ .+|.|+.|....
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~--- 124 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-ILVGNKSDLARS--- 124 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCE-EEEEECTTCGGG---
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCE-EEEeeCcchhhc---
Confidence 357788999986433211 22223446888888877654 3555555555555432 4555 499999985311
Q ss_pred CCccccCCchhhHHHHHhCCcE
Q 022525 212 EPSFIFGKGGTHRTAAEMGLKV 233 (295)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~g~~~ 233 (295)
.........++.+.++.++
T Consensus 125 ---~~~~~~~~~~~~~~~~~~~ 143 (169)
T 3q85_A 125 ---REVSLEEGRHLAGTLSCKH 143 (169)
T ss_dssp ---CCSCHHHHHHHHHHTTCEE
T ss_pred ---ccCCHHHHHHHHHHcCCcE
Confidence 1112234556666666543
No 137
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.75 E-value=0.0031 Score=49.17 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=35.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+++++|++ ..|+||||+...|...+.. .|.+|..|..|+..
T Consensus 6 ~~~i~i~G-~sGsGKTTl~~~l~~~l~~-~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAA-WSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEEC-CTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC-
T ss_pred ceEEEEEe-CCCCCHHHHHHHHHHhccc-cCCceeEEeeCCCc
Confidence 57787765 7799999999999999999 99999999988754
No 138
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.74 E-value=0.023 Score=45.73 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=56.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc---CCCCeeeEEeccccCCCCCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPILGLVENMSCFICPHCSEP 213 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~~~~~~~~~ 213 (295)
..+.+-|.||++.-....+...-...++.++++...+. .++..+...++.+.. .+.+ +.+|.|+.|...
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~------ 132 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLAD------ 132 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGG------
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHh------
Confidence 45778899999654433333344557888888876544 467777666666654 2344 458999998432
Q ss_pred ccccCCchhhHHHHHhCCcEE
Q 022525 214 SFIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 214 ~~~~~~~~~~~~~~~~g~~~~ 234 (295)
......+..+++.+.++.+++
T Consensus 133 ~r~V~~~e~~~~a~~~~~~~~ 153 (216)
T 4dkx_A 133 KRQVSIEEGERKAKELNVMFI 153 (216)
T ss_dssp GCCSCHHHHHHHHHHHTCEEE
T ss_pred cCcccHHHHhhHHHHhCCeeE
Confidence 122333557778888886543
No 139
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.73 E-value=0.014 Score=46.03 Aligned_cols=68 Identities=9% Similarity=-0.057 Sum_probs=42.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc-------CCCCeeeEEeccccCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK-------VQVPILGLVENMSCFI 206 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~-------~~~~~~~~ViN~~~~~ 206 (295)
..+.+.|+|+|+...........+..+|.+|+|..... .++..+...+..+.. .+.++ .+|+|+.|..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 130 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF-VVLGNKIDLE 130 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCE-EEEEECTTSS
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcE-EEEEECCCCc
Confidence 45779999999643322233344557899999987654 345555444444332 23444 5999999853
No 140
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.71 E-value=0.0044 Score=52.78 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=40.0
Q ss_pred CCccEEEEcCCCCC-Cc--------cchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGT-GD--------AQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~-~~--------~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.++++|||+.. .. .......+..+|.++++......+ .......+.+...+.|.+ +|+|+.|.
T Consensus 54 ~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~-~~~~~i~~~l~~~~~P~i-lvlNK~D~ 128 (301)
T 1ega_A 54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT-PDDEMVLNKLREGKAPVI-LAVNKVDN 128 (301)
T ss_dssp TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCC-HHHHHHHHHHHSSSSCEE-EEEESTTT
T ss_pred CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCC-HHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 45678999998543 10 011234455788888877765432 223345556665566765 88899984
No 141
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.71 E-value=0.0019 Score=51.24 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=31.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
++++.+ -+.-|.||||.+..++..+.. +|++|+++-
T Consensus 8 g~i~v~-~G~mgsGKTT~ll~~a~r~~~-~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVI-VGPMYSGKSEELIRRIRRAKI-AKQKIQVFK 43 (191)
T ss_dssp CEEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CEEEEE-ECCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 565555 577899999999999999999 999999995
No 142
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.70 E-value=0.021 Score=43.41 Aligned_cols=66 Identities=14% Similarity=0.017 Sum_probs=43.1
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.++++..... .++......+..+.. .+.+ +.+|+|+.|.
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 120 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDM 120 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCC
Confidence 4678999999654322333344557899999887654 356666665555543 2444 4599999984
No 143
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.68 E-value=0.029 Score=43.00 Aligned_cols=67 Identities=10% Similarity=-0.022 Sum_probs=38.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc-------CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK-------VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~-------~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++..... .++..+...+..+.. .+.++ .+|+|+.|.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 130 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF-VILGNKIDA 130 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCE-EEEEECTTS
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcE-EEEEECCcc
Confidence 45789999999643322233344557899998887654 345555544444432 34454 599999984
No 144
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.67 E-value=0.003 Score=58.07 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=51.1
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
.+.+.|+|||+...........+..+|.+++|+..+..........+..+...+.|++ +++|+.|..
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiI-VViNKiDl~ 117 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIV-LAINKCDKA 117 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEE-ECCBSGGGT
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEE-EEEeccccc
Confidence 3457899999754433344445667899999999888777788888888888888864 999999953
No 145
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.65 E-value=0.023 Score=43.91 Aligned_cols=67 Identities=13% Similarity=0.035 Sum_probs=44.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
+.+.+.|+|+|+...........+..+|.+++|.+.... ++..+...+..+.+ .+.+ +.+|+|+.|.
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 134 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDV 134 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCc
Confidence 347799999996533223334456678999998887653 67777666665543 3344 4599999984
No 146
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.63 E-value=0.033 Score=41.96 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=43.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++..... .++......+..+... +.+ +.+|.|+.|.
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 113 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDL 113 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCC
Confidence 45779999999654322233334567899988887654 4567666666655432 444 4599999984
No 147
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.62 E-value=0.0049 Score=48.42 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=43.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+|+|..... .++..+...++.+.. .+.+ +.+|+|+.|.
T Consensus 73 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl 143 (192)
T 2il1_A 73 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDC 143 (192)
T ss_dssp EEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred eEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccc
Confidence 34779999999644322333444567899999888655 355555555555443 2344 4599999985
No 148
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.61 E-value=0.012 Score=45.62 Aligned_cols=66 Identities=14% Similarity=0.032 Sum_probs=41.6
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.++++...+. .++..+...+..+.. .+.+ +.+|.|+.+.
T Consensus 58 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 127 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDL 127 (186)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccc
Confidence 4678999999644322333344557898888887655 355555555444433 3444 4599999985
No 149
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.011 Score=46.86 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=42.6
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHH-HHHHHHHhcC--CCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDA-RKGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~-~~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.++++...+. .++..+ ...+..+... +.+++ +|+|+.|.
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 141 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII-LVANKKDL 141 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECGGG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEchhh
Confidence 4779999999754332333444557899998877654 355555 3444555442 55554 99999984
No 150
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.59 E-value=0.013 Score=46.31 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=41.4
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.+|++..... .++..+...+..+.. .+.+ +.+|+|+.|.
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 142 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDL 142 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCc
Confidence 4779999999632211223344567899998887654 355555555555443 2444 4599999985
No 151
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.59 E-value=0.008 Score=55.31 Aligned_cols=92 Identities=13% Similarity=0.004 Sum_probs=66.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCCCCCcccc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHCSEPSFIF 217 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~~~~~~~~ 217 (295)
..+.+.|+|||+..+........+..+|.+|+|+.+...........+..+...+.+++ +|+|+.|.... .
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPii-vviNK~Dl~~~--------~ 150 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIM-TFINKMDRDTR--------P 150 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEE-EEEECTTSCCS--------C
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCCCccc--------c
Confidence 46889999999766544555666778999999999887666667778888888888775 99999984211 0
Q ss_pred CCchhhHHHHHhCCcEEE-eec
Q 022525 218 GKGGTHRTAAEMGLKVIG-EIP 238 (295)
Q Consensus 218 ~~~~~~~~~~~~g~~~~~-~Ip 238 (295)
.....+++.+.++..+.. .+|
T Consensus 151 ~~~~l~ei~~~l~~~~~~~~~p 172 (528)
T 3tr5_A 151 SIELLDEIESILRIHCAPVTWP 172 (528)
T ss_dssp HHHHHHHHHHHHCCEEEESEEE
T ss_pred HHHHHHHHHHhhCCCceeeecc
Confidence 123477888888876654 344
No 152
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.57 E-value=0.018 Score=46.01 Aligned_cols=67 Identities=7% Similarity=-0.035 Sum_probs=43.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHH-HHHHHHHHhcC--CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALID-ARKGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~-~~~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+++...........+..+|.+|++.+.+. .++.. ....+..+... +.++ .+|.|+.|.
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl 143 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDL 143 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEE-EEEEECGGG
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhh
Confidence 45789999999644322333444567899998887654 35555 34555555443 4444 589999985
No 153
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.016 Score=46.01 Aligned_cols=66 Identities=9% Similarity=-0.023 Sum_probs=41.8
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.++++.+... .++..+...++.+.. .+.+ +.+|.|+.|.
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl 143 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDL 143 (201)
T ss_dssp EEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence 4678999999643322233444567899999887654 355555555555543 2334 4589999985
No 154
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.49 E-value=0.011 Score=50.52 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=32.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhC--CCeEEEEEeCCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADVY 72 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~--g~~VlliD~D~~ 72 (295)
+..+.+..|+||||++.+++..+++ . |.+|+.||....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s 69 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccch
Confidence 3455677999999999999999998 6 889999998654
No 155
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.48 E-value=0.018 Score=45.46 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=42.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHH-HHHHHHHhcC--CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDA-RKGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~-~~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...+. .++... ...++.+... +.+++ +|+|+.|.
T Consensus 71 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 141 (201)
T 2gco_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 141 (201)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECGGG
T ss_pred EEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEecHHh
Confidence 34778999999643322233344557899998877554 356555 3444555442 55554 99999985
No 156
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.41 E-value=0.01 Score=46.24 Aligned_cols=42 Identities=7% Similarity=0.004 Sum_probs=29.3
Q ss_pred cCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 163 QLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 163 ~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+|.+++++..............+++...+.+++ +|+|+.|.
T Consensus 104 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl 145 (195)
T 3pqc_A 104 SLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFT-IVLTKMDK 145 (195)
T ss_dssp TEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGG
T ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 3488888887665434444466677777777765 99999984
No 157
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.37 E-value=0.0058 Score=48.60 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=35.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+.+|+++ +..|+||||++..|+..+.. .|.+|.+++.|...
T Consensus 22 ~~~i~i~-G~~GsGKstl~~~l~~~~~~-~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 22 RLVLGID-GLSRSGKTTLANQLSQTLRE-QGISVCVFHMDDHI 62 (201)
T ss_dssp SEEEEEE-ECTTSSHHHHHHHHHHHHHH-TTCCEEEEEGGGGC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhh-cCCeEEEeccCccc
Confidence 5777775 77999999999999999998 89999999888654
No 158
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.36 E-value=0.0046 Score=53.03 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=33.2
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.+..|+||||++.++|..++. .|.+|+++++...
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE~s 107 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMG 107 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECCCC
Confidence 4444699999999999999999999 8999999998843
No 159
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.33 E-value=0.0049 Score=50.34 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=34.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.++ +..|+||||++.+++..++. .|.+|++++.+..
T Consensus 23 G~~~~i~-G~~GsGKTtl~~~~~~~~~~-~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 23 RNVVLLS-GGPGTGKTIFSQQFLWNGLK-MGEPGIYVALEEH 62 (247)
T ss_dssp TCEEEEE-ECTTSSHHHHHHHHHHHHHH-TTCCEEEEESSSC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccCC
Confidence 4566665 67999999999999999999 8999999998864
No 160
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.33 E-value=0.0032 Score=50.61 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=31.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
+++. |+.+.-|.||||.+..++..+.. +|++|+++-
T Consensus 28 G~l~-vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~k 63 (214)
T 2j9r_A 28 GWIE-VICGSMFSGKSEELIRRVRRTQF-AKQHAIVFK 63 (214)
T ss_dssp CEEE-EEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CEEE-EEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 5544 44588899999999999999999 999999994
No 161
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.31 E-value=0.038 Score=43.00 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=44.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+++|.+... .++..+...+..+.+ .+.++ .+|+|+.|.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 136 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV-LVLGNKRDL 136 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCE-EEEEECCCC
Confidence 56789999999643322233344567899999888654 467776666655543 34555 599999984
No 162
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.22 E-value=0.014 Score=48.00 Aligned_cols=67 Identities=7% Similarity=0.033 Sum_probs=37.9
Q ss_pred CCccEEEEcCCCCCCccc-----h---hhh----hhccCceEEEeeCCCcchHHHHHHHHHHHhcC-C----CCeeeEEe
Q 022525 138 GNLDILVIDMPPGTGDAQ-----L---TTT----QTLQLSGALIVSTPQDVALIDARKGITMFSKV-Q----VPILGLVE 200 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~-----~---~~~----~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-~----~~~~~~Vi 200 (295)
....++|+|||+-.+... + ... ....+|.+|+|...+... ......++++.+. + ...+.++.
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~iilv~ 146 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFT-AQDQQAVRQVRDMFGEDVLKWMVIVFT 146 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCC-HHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCC-HHHHHHHHHHHHHhChhhhccEEEEEE
Confidence 456799999996432110 0 001 125789999998877543 2233444444432 1 22345889
Q ss_pred ccccC
Q 022525 201 NMSCF 205 (295)
Q Consensus 201 N~~~~ 205 (295)
|+.+.
T Consensus 147 nK~Dl 151 (247)
T 3lxw_A 147 RKEDL 151 (247)
T ss_dssp CGGGG
T ss_pred chHhc
Confidence 99874
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.20 E-value=0.0091 Score=51.98 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=34.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.|++ ..|+||||++.+++..++. .|.+|++||....
T Consensus 61 G~i~~I~G-ppGsGKSTLal~la~~~~~-~gg~VlyId~E~s 100 (356)
T 3hr8_A 61 GRIVEIFG-QESSGKTTLALHAIAEAQK-MGGVAAFIDAEHA 100 (356)
T ss_dssp TEEEEEEE-STTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred CcEEEEEC-CCCCCHHHHHHHHHHHHHh-cCCeEEEEecccc
Confidence 56777765 5999999999999999999 9999999988754
No 164
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.18 E-value=0.0056 Score=47.93 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=31.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+.|.|. +-.|+||||++..|+..+.. .|.++..+|.|
T Consensus 2 ~~I~i~-G~~GsGKsT~~~~L~~~l~~-~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVT-GIPGVGKSTVLAKVKEILDN-QGINNKIINYG 38 (194)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHHHHHT-TTCCEEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHh-cCceEEEEECC
Confidence 556664 67899999999999999998 89999888654
No 165
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.18 E-value=0.019 Score=52.98 Aligned_cols=88 Identities=7% Similarity=-0.098 Sum_probs=51.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcC--CCCeeeEEeccccCCCCCCCCCcc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV--QVPILGLVENMSCFICPHCSEPSF 215 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~--~~~~~~~ViN~~~~~~~~~~~~~~ 215 (295)
..+.+.|+|+|+.-.........+..+|.+|+|.+.... ......+..+... +.+++ +|.|+.|.....
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvi-lV~NK~Dl~~~~------ 166 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVI-VVMNKIDENPSY------ 166 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEE-EEECCTTTCTTC------
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEE-EEEECCCccccc------
Confidence 468899999997433222333345578999999876543 4445555555543 35554 999999953211
Q ss_pred ccCCchhhHHHHHhCCcEE
Q 022525 216 IFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 216 ~~~~~~~~~~~~~~g~~~~ 234 (295)
.......++.....+.+++
T Consensus 167 ~v~~~~~~~~~~~~~~~~~ 185 (535)
T 3dpu_A 167 NIEQKKINERFPAIENRFH 185 (535)
T ss_dssp CCCHHHHHHHCGGGTTCEE
T ss_pred ccCHHHHHHHHHhcCCceE
Confidence 1112234455555565554
No 166
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.16 E-value=0.0061 Score=53.03 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=34.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.++.|+ +..|+||||++.+++..++. .|.+|++||++.
T Consensus 61 G~iv~I~-G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIY-GPESSGKTTVALHAVANAQA-AGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence 4666665 67999999999999999999 999999999985
No 167
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.16 E-value=0.014 Score=52.36 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=38.7
Q ss_pred CCccEEEEcCCCCCCcc---------chhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEecccc
Q 022525 138 GNLDILVIDMPPGTGDA---------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSC 204 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~---------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~ 204 (295)
.+..+.|+|||+-.... ......+..||.+++|++....-...-....+++++.+.+++ +|+|+.+
T Consensus 47 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~i-lv~NK~D 121 (439)
T 1mky_A 47 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTI-LVANKAE 121 (439)
T ss_dssp TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEE-EEEESCC
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCC
Confidence 34568899998633210 112334567899999987654211122334455555566654 8999987
No 168
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.15 E-value=0.0051 Score=47.76 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=32.6
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
|+++++|++ ..|+||||++..|+..+.. .|.++..|-.|..
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~~-~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILRE-RGLRVAVVKRHAH 41 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHHH-TTCCEEEEEC---
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhhh-cCCceEEEEEcCc
Confidence 367899987 7799999999999999999 8988887777754
No 169
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.14 E-value=0.0068 Score=52.39 Aligned_cols=38 Identities=11% Similarity=0.295 Sum_probs=33.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.+..|+||||++.++|..++. .|.+|+++.+.-.
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlEms 85 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLEMS 85 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCCC
Confidence 4444699999999999999999999 9999999988743
No 170
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.13 E-value=0.0029 Score=53.57 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=32.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
..+|+|. +..|+||||+|..|+..|.. .|.++.+||+|--.
T Consensus 5 ~~iIgIt-G~sGSGKSTva~~L~~~lg~-~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVT-GSSGAGTSTVKHTFDQIFRR-EGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEE-SCC---CCTHHHHHHHHHHH-HTCCEEEEEGGGGB
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHhh-cCCCeeEeecchhh
Confidence 4678886 78899999999999999988 78899999999655
No 171
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.13 E-value=0.011 Score=47.28 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=38.2
Q ss_pred CccEEEEcCCCCCCccchhhhhhcc----CceEEEeeCCC--cchHHHHHHHHHHHhc-------CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQ----LSGALIVSTPQ--DVALIDARKGITMFSK-------VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~----ad~viiv~~~~--~~s~~~~~~~~~~l~~-------~~~~~~~~ViN~~~~ 205 (295)
.+++.|+|+|+...........+.. +|.++++.... ..++......+..+.. .+.++ .+|.|+.|.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 132 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI-LIACNKSEL 132 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCE-EEEEECTTS
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCE-EEEEEchHh
Confidence 4678999999643321111222222 78888887765 2455555444443322 34555 599999985
Q ss_pred C
Q 022525 206 I 206 (295)
Q Consensus 206 ~ 206 (295)
.
T Consensus 133 ~ 133 (218)
T 1nrj_B 133 F 133 (218)
T ss_dssp T
T ss_pred c
Confidence 3
No 172
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.12 E-value=0.0081 Score=53.92 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=38.0
Q ss_pred CCccEEEEcCCCCCCc--------cchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGD--------AQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~--------~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+..+.|+|||+.... .......+..||.++++++....-...-....+.+++.+.+++ +|+|+.+.
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvi-lv~NK~D~ 123 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDN 123 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEE-EEEECCCC
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccC
Confidence 4567899999864310 0122334567899998887654322222345556666666664 99999984
No 173
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.10 E-value=0.006 Score=54.90 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=34.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
-+.++.+..|+||||++.++|..++. .|.+|+++.+.-..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~-~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMGK 237 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHH-TTCEEEEECSSSCT
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH-cCCEEEEEECCCCH
Confidence 34455689999999999999999999 89999999888543
No 174
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.04 E-value=0.0079 Score=48.17 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=30.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.+ .+..|+||||++.+++. . .|.+|+++|.+.+
T Consensus 20 G~~~~i-~G~~GsGKTtl~~~l~~---~-~~~~v~~i~~~~~ 56 (220)
T 2cvh_A 20 GVLTQV-YGPYASGKTTLALQTGL---L-SGKKVAYVDTEGG 56 (220)
T ss_dssp TSEEEE-ECSTTSSHHHHHHHHHH---H-HCSEEEEEESSCC
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHH---H-cCCcEEEEECCCC
Confidence 455555 58899999999999998 5 6889999998864
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.02 E-value=0.0034 Score=58.68 Aligned_cols=68 Identities=9% Similarity=-0.057 Sum_probs=36.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch-------HHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-------LIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|||+...........+..+|.+|+|+...... ...+...+..+...+.+.+.+|+|+.+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl 327 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL 327 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 4578999999975432223344456789888888776532 3445566666677788756689999984
No 176
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.02 E-value=0.02 Score=45.33 Aligned_cols=67 Identities=16% Similarity=0.044 Sum_probs=42.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHH-HHHHHHhcC--CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~-~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...+. .++.... ..+..+... +.++ .+|.|+.|.
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 146 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDL 146 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCE-EEEEECHHH
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEechhh
Confidence 45778899999643322333445567899998887654 3555554 445555443 5555 499999984
No 177
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.02 E-value=0.0056 Score=50.59 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=32.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHh----CCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASK----CQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~----~g~~VlliD~D~~~ 73 (295)
+.+|+|+ +-.|+||||+|..|+..|... .+++|++||+|--.
T Consensus 22 ~~iI~I~-G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVS-GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 5677775 889999999999998876641 26789999998543
No 178
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.00 E-value=0.11 Score=47.22 Aligned_cols=67 Identities=16% Similarity=0.072 Sum_probs=45.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+||++...........+..+|.+|+|.+... .++......+..+.+ .+.++ .+|+||.|.
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl 435 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQDL 435 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEE-EEEEECCSS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcE-EEEEECCCC
Confidence 45789999999754433344455667999999988654 467777666665543 24444 599999984
No 179
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=95.98 E-value=0.012 Score=58.63 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=48.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|||+...........+..+|.+|+|+.........+...+..+...+.+.+.+++|+.|.
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDM 424 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccc
Confidence 56789999999644322223344567899999998877555556666666666788865689999984
No 180
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.95 E-value=0.0096 Score=46.57 Aligned_cols=40 Identities=5% Similarity=0.103 Sum_probs=25.7
Q ss_pred ceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 165 SGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 165 d~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
|.++++.......-......++++...+.+++ +|+|+.|.
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl 146 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVI-VIATKADK 146 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 77888776554322223345566666666765 99999984
No 181
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=95.91 E-value=0.0076 Score=54.85 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=48.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.+.|+|||+...........+..+|.++++++.+......+...+..+...+.+. .+|+|+.|.
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl 137 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDN 137 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTS
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence 3477999999964332223344566789999999887655556666667777788888 599999984
No 182
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.83 E-value=0.015 Score=46.14 Aligned_cols=40 Identities=38% Similarity=0.282 Sum_probs=33.9
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.+.+|++. +..|+||||++..|+..+.. .|.-+..+|.|.
T Consensus 24 ~g~~i~l~-G~sGsGKSTl~~~La~~l~~-~G~~~~~~d~d~ 63 (200)
T 3uie_A 24 KGCVIWVT-GLSGSGKSTLACALNQMLYQ-KGKLCYILDGDN 63 (200)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHh-cCceEEEecCch
Confidence 36778776 88899999999999999997 898877888764
No 183
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.78 E-value=0.11 Score=41.79 Aligned_cols=68 Identities=15% Similarity=-0.032 Sum_probs=39.3
Q ss_pred CCccEEEEcCCCCCCcc---c-----hh-hhhhccCceEEEeeCCCcc-h--HHHHHHHHHHHhcC--CCCeeeEEeccc
Q 022525 138 GNLDILVIDMPPGTGDA---Q-----LT-TTQTLQLSGALIVSTPQDV-A--LIDARKGITMFSKV--QVPILGLVENMS 203 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~---~-----~~-~~~l~~ad~viiv~~~~~~-s--~~~~~~~~~~l~~~--~~~~~~~ViN~~ 203 (295)
..+.+.|+|||+..... . .. ......+|.+++|.+.+.. + .......+..+... +.++ .+|+|+.
T Consensus 74 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~pi-ilv~nK~ 152 (228)
T 2qu8_A 74 KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSI-VIGFNKI 152 (228)
T ss_dssp TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCE-EEEEECG
T ss_pred CCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcE-EEEEeCc
Confidence 34678999999653210 0 01 1123456888888776543 2 23334555555554 5555 5999999
Q ss_pred cCC
Q 022525 204 CFI 206 (295)
Q Consensus 204 ~~~ 206 (295)
|..
T Consensus 153 Dl~ 155 (228)
T 2qu8_A 153 DKC 155 (228)
T ss_dssp GGC
T ss_pred ccC
Confidence 853
No 184
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.77 E-value=0.015 Score=45.01 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=33.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.+|+++ +--|+||||++..|+..+.. .|.+++.+|.|.-
T Consensus 5 g~~i~l~-G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLT-GLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 5777775 78899999999999999988 8999988886643
No 185
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.77 E-value=0.012 Score=48.09 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=31.2
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.+..|+|||+++.++|...+...|.+|++++++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 444568899999999999998765426899999988754
No 186
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.074 Score=42.54 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=37.6
Q ss_pred CccEEEEcCCCCCC-ccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTG-DAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~-~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
.+.++++|+++... ...+.......+|.+++|..-+ ..++..+......+.+. +.++ .+|.|+.|.
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pi-ilVgNK~DL 157 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI-ILVGNKSDL 157 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCE-EEEEECTTC
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcE-EEEEEChHH
Confidence 45678888874322 1111111122467777776543 45677776666555532 4554 499999984
No 187
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=95.75 E-value=0.014 Score=52.43 Aligned_cols=68 Identities=13% Similarity=0.020 Sum_probs=49.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchH-------HHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL-------IDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.++|+|||+...........+..+|.+++|+..+...+ ..+.+.+..+...+.+.+.+++|+.|.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 56789999999754432334445567999999999877543 356666677777888855699999984
No 188
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.75 E-value=0.015 Score=52.48 Aligned_cols=68 Identities=6% Similarity=0.014 Sum_probs=44.7
Q ss_pred CCccEEEEcCCCCCC--------ccc---hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 138 GNLDILVIDMPPGTG--------DAQ---LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~--------~~~---~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
....+.|+|||+-.. ... .....+..+|.++++.................+...+.+++ +|+|++|..
T Consensus 241 ~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~i-lv~NK~Dl~ 319 (456)
T 4dcu_A 241 NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV-IVVNKWDAV 319 (456)
T ss_dssp TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGS
T ss_pred CCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEEChhcC
Confidence 345789999985211 001 12234557899999988777555556667777777776664 999999953
No 189
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.65 E-value=0.013 Score=46.36 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=31.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+.+.++ +..|+||||++..++..+.. .|.+++.+++.
T Consensus 55 ~~~~l~-G~~GtGKT~la~~i~~~~~~-~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLH-GSFGVGKTYLLAAIANELAK-RNVSSLIVYVP 91 (202)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHT-TTCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEEEhH
Confidence 455554 78899999999999999998 89999988664
No 190
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.62 E-value=0.014 Score=46.93 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=34.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.+++++ +..|+||||++..++..++. .+.+|++++.+..
T Consensus 23 G~~~~i~-G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 23 GFFIALT-GEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTEES 62 (235)
T ss_dssp TCEEEEE-CSTTSSHHHHHHHHHHHHHH-HTCCEEEEESSSC
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcccC
Confidence 4677775 77999999999999999988 7889999998763
No 191
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.55 E-value=0.037 Score=52.69 Aligned_cols=64 Identities=16% Similarity=0.069 Sum_probs=40.9
Q ss_pred ccEEEEcCCCCCCc----cchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 140 LDILVIDMPPGTGD----AQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 140 yD~iiiD~~~~~~~----~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
++++|+|||+ +.. .......+..+|.+|+|+.++.. +........+.+...+.+ +.+|+|+.|.
T Consensus 174 ~~l~LiDTPG-l~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl 242 (695)
T 2j69_A 174 KGIEIVDSPG-LNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQ 242 (695)
T ss_dssp TTEEEEECCC-HHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred CCeEEEECCC-CCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECccc
Confidence 6899999995 321 12333455679999999887653 333333333445545666 4599999985
No 192
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.55 E-value=0.01 Score=46.16 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=30.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEEe
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDA 69 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la-~~~g~~VlliD~ 69 (295)
++.+.++ +..|+||||++..++..+. . .|.+++.+++
T Consensus 38 g~~~~l~-G~~G~GKTtL~~~i~~~~~~~-~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFV-GSPGVGKTHLAVATLKAIYEK-KGIRGYFFDT 75 (180)
T ss_dssp CCEEEEC-CSSSSSHHHHHHHHHHHHHHH-SCCCCCEEEH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHH-cCCeEEEEEH
Confidence 4667665 7899999999999999998 6 7888877643
No 193
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.54 E-value=0.056 Score=43.93 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=15.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHH
Q 022525 32 DVIAVASGKGGVGKSTTAVNLA 53 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA 53 (295)
..|+++ +..|+||||+.-.|.
T Consensus 30 ~~i~lv-G~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLV-GKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHc
Confidence 445554 899999999987543
No 194
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.53 E-value=0.063 Score=45.12 Aligned_cols=67 Identities=16% Similarity=0.084 Sum_probs=37.7
Q ss_pred CccEEEEcCCCCCC-------cc------chhhhhhccCceEE-EeeCCCc-chHHHHHHHHHHHhcCCCCeeeEEeccc
Q 022525 139 NLDILVIDMPPGTG-------DA------QLTTTQTLQLSGAL-IVSTPQD-VALIDARKGITMFSKVQVPILGLVENMS 203 (295)
Q Consensus 139 ~yD~iiiD~~~~~~-------~~------~~~~~~l~~ad~vi-iv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~ViN~~ 203 (295)
.++++|+|||+-.. .. ......+..++.++ ++..... .........++.+...+.+++ +|+|+.
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i-~V~NK~ 202 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTI-GVITKL 202 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEE-EEEECG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEE-EEEEcc
Confidence 48999999995321 10 11222333566555 3544432 333333456666665566654 999999
Q ss_pred cCC
Q 022525 204 CFI 206 (295)
Q Consensus 204 ~~~ 206 (295)
|..
T Consensus 203 Dl~ 205 (299)
T 2aka_B 203 DLM 205 (299)
T ss_dssp GGS
T ss_pred ccC
Confidence 853
No 195
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.39 E-value=0.019 Score=51.68 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=32.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.+..+..|+||||++.++|...+...|.+|+++++...
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP 240 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 444568999999999999999999724899999998743
No 196
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.37 E-value=0.023 Score=46.97 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=36.0
Q ss_pred CCccEEEEcCCCCCCccc-----------hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcC-----CCCeeeEEec
Q 022525 138 GNLDILVIDMPPGTGDAQ-----------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV-----QVPILGLVEN 201 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~-----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-----~~~~~~~ViN 201 (295)
..+.++|+|||+...... .....+..+|.+|+|....... ......++++.+. ..+.+ +|+|
T Consensus 69 ~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~i-~vv~ 146 (260)
T 2xtp_A 69 GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT-SQDQQAAQRVKEIFGEDAMGHTI-VLFT 146 (260)
T ss_dssp TTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCC-HHHHHHHHHHHHHHCGGGGGGEE-EEEE
T ss_pred CCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC-HHHHHHHHHHHHHhCchhhccEE-EEEE
Confidence 457799999996332110 0011344689999998877522 1222233333332 34554 5666
Q ss_pred -cccC
Q 022525 202 -MSCF 205 (295)
Q Consensus 202 -~~~~ 205 (295)
+.+.
T Consensus 147 nK~Dl 151 (260)
T 2xtp_A 147 HKEDL 151 (260)
T ss_dssp CGGGG
T ss_pred ccccc
Confidence 8884
No 197
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.35 E-value=0.018 Score=46.08 Aligned_cols=39 Identities=33% Similarity=0.307 Sum_probs=32.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la-~~~g~~VlliD~D~ 71 (295)
+++|.+. +-.|+||||++..|+..+. . .|.++..+|.|.
T Consensus 25 ~~~i~~~-G~~GsGKsT~~~~l~~~l~~~-~g~~~~~~~~d~ 64 (211)
T 1m7g_A 25 GLTIWLT-GLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDN 64 (211)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHhccc-cCCcEEEECChH
Confidence 5777775 7789999999999999998 6 798899998653
No 198
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.34 E-value=0.0082 Score=46.78 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=24.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++.|.++ +-.|+||||++..||..+ |.. ++|.|.
T Consensus 5 ~~~i~l~-G~~GsGKst~a~~La~~l----~~~--~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLI-GLMGAGKTSVGSQLAKLT----KRI--LYDSDK 38 (185)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHH----CCC--EEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh----CCC--EEEChH
Confidence 5667765 568999999999887655 433 456663
No 199
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.32 E-value=0.22 Score=38.82 Aligned_cols=66 Identities=23% Similarity=0.212 Sum_probs=36.3
Q ss_pred CccEEEEcCCCCCC-ccchhhhhhccCceEEEeeCC-CcchHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTG-DAQLTTTQTLQLSGALIVSTP-QDVALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~-~~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
.+.++++|++.... ...+.......+|.+++|..- +..++.........+.+ .+.++ .+|.|+.+.
T Consensus 55 ~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pi-ilV~NK~Dl 126 (192)
T 2cjw_A 55 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI-ILVGNKSDL 126 (192)
T ss_dssp EEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCE-EEEEECTTC
T ss_pred EEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeE-EEEEechhh
Confidence 35567888875322 111222223346777777655 44566666655554443 24454 499999884
No 200
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.29 E-value=0.024 Score=51.16 Aligned_cols=41 Identities=29% Similarity=0.475 Sum_probs=33.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.++.+ .+..|+||||++.++|..++...|.+|++++++..
T Consensus 203 G~liiI-~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 203 SDLIIV-AARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp TCEEEE-ECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 345544 59999999999999999999635889999998754
No 201
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.23 E-value=0.024 Score=45.11 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=38.4
Q ss_pred CccEEEEcCCCCCCccc-hhhhhhccCceEEEeeCCCcc--hHHHHHHHHHHH-h-----cCCCCeeeEEeccccCC
Q 022525 139 NLDILVIDMPPGTGDAQ-LTTTQTLQLSGALIVSTPQDV--ALIDARKGITMF-S-----KVQVPILGLVENMSCFI 206 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~-~~~~~l~~ad~viiv~~~~~~--s~~~~~~~~~~l-~-----~~~~~~~~~ViN~~~~~ 206 (295)
.+.+.|+|+|+...... +....+..+|.+++|.+.... +.......+..+ . ..+.+ +.+|.|+.|..
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 128 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIA 128 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTST
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCC
Confidence 57899999996433211 222224578999999887652 233333332222 1 12344 45999999853
No 202
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.20 E-value=0.058 Score=41.84 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=53.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccCCCCCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCFICPHCSEP 213 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~~~~~~~~~ 213 (295)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +.+ +.+|+|+.|.....
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~---- 143 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDER---- 143 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC----
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccccccc----
Confidence 35779999999754333344455667899999888754 3566666666555543 344 45999999853211
Q ss_pred ccccCCchhhHHHHHhCCc
Q 022525 214 SFIFGKGGTHRTAAEMGLK 232 (295)
Q Consensus 214 ~~~~~~~~~~~~~~~~g~~ 232 (295)
.......+++.+.++.+
T Consensus 144 --~~~~~~~~~~~~~~~~~ 160 (189)
T 2gf9_A 144 --VVPAEDGRRLADDLGFE 160 (189)
T ss_dssp --CSCHHHHHHHHHHHTCE
T ss_pred --CCCHHHHHHHHHHcCCe
Confidence 11123456666666653
No 203
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.13 E-value=0.013 Score=53.54 Aligned_cols=40 Identities=25% Similarity=0.239 Sum_probs=33.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D~~ 72 (295)
+.++ ++.+..|+||||++.++|..++. . |.+|++++++..
T Consensus 242 G~l~-li~G~pG~GKT~lal~~a~~~a~-~~g~~vl~~s~E~s 282 (503)
T 1q57_A 242 GEVI-MVTSGSGMVMSTFVRQQALQWGT-AMGKKVGLAMLEES 282 (503)
T ss_dssp TCEE-EEEESSCHHHHHHHHHHHHHHTT-TSCCCEEEEESSSC
T ss_pred CeEE-EEeecCCCCchHHHHHHHHHHHH-hcCCcEEEEeccCC
Confidence 3444 55688999999999999999998 6 999999998754
No 204
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.13 E-value=0.1 Score=40.40 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=40.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+++... +. .+..+|.++++...+. .++..+...+..+... +.++ .+|.|+.|.
T Consensus 65 ~~~~l~i~Dt~G~~~---~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 131 (184)
T 3ihw_A 65 QSYLLLIRDEGGPPE---LQ--FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM-VLVGTQDAI 131 (184)
T ss_dssp EEEEEEEEECSSSCC---HH--HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCE-EEEEECTTC
T ss_pred EEEEEEEEECCCChh---hh--eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 346688899985433 21 3446898888876554 4566666666666553 3444 489999985
No 205
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.09 E-value=0.029 Score=45.23 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=32.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++.+.++ +..|+||||++..++..+.. .|.++..++++.
T Consensus 52 ~~~~ll~-G~~G~GKT~la~~l~~~~~~-~~~~~~~~~~~~ 90 (242)
T 3bos_A 52 VQAIYLW-GPVKSGRTHLIHAACARANE-LERRSFYIPLGI 90 (242)
T ss_dssp CSEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEEEGGG
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHHH
Confidence 3555554 77899999999999999999 899999998754
No 206
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=95.07 E-value=0.055 Score=47.38 Aligned_cols=67 Identities=6% Similarity=-0.109 Sum_probs=51.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEec-cccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVEN-MSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN-~~~~ 205 (295)
..+.+.|+|||+...........+..+|.+|+|++ +......+.+.+..+...+.+.+.+++| +.|.
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 45779999999765532334455668999999999 7666777778888888888888568999 9983
No 207
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.04 E-value=0.091 Score=40.02 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=44.8
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc-----CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK-----VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~-----~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.+++|...... ++..+...+..+.. .+.+.+.+|.|+.|.
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl 127 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL 127 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGG
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccc
Confidence 47899999997544323344556679999999887653 55555555555543 255656689999985
No 208
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.02 E-value=0.025 Score=52.23 Aligned_cols=39 Identities=41% Similarity=0.351 Sum_probs=33.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+|.++ +..|+||||++..|+..|.. .|.++.++|.|.
T Consensus 372 ~~~I~l~-G~~GsGKSTia~~La~~L~~-~G~~~~~ld~D~ 410 (546)
T 2gks_A 372 GFCVWLT-GLPCAGKSTIAEILATMLQA-RGRKVTLLDGDV 410 (546)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEECHHH
T ss_pred ceEEEcc-CCCCCCHHHHHHHHHHHhhh-cCCeEEEECchH
Confidence 4666665 77889999999999999999 999999999874
No 209
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.01 E-value=0.015 Score=46.13 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=26.4
Q ss_pred cCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 27 ~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+..++++|++. +-.|+||||++..|+..+ |. .+||.|.
T Consensus 14 m~~~~~~I~l~-G~~GsGKSTla~~L~~~l----g~--~~i~~d~ 51 (202)
T 3t61_A 14 VRRFPGSIVVM-GVSGSGKSSVGEAIAEAC----GY--PFIEGDA 51 (202)
T ss_dssp -CCCSSCEEEE-CSTTSCHHHHHHHHHHHH----TC--CEEEGGG
T ss_pred cCCCCeEEEEE-CCCCCCHHHHHHHHHHHh----CC--EEEeCCc
Confidence 34445677664 888999999999887765 32 4567764
No 210
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.94 E-value=0.02 Score=44.58 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=28.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
++|+| .+-.|+||||++..|+..+.. .|.+.-.+|.|
T Consensus 4 ~~I~i-~G~~GsGKsT~~~~L~~~l~~-~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVV-TGVPGVGSTTSSQLAMDNLRK-EGVNYKMVSFG 40 (192)
T ss_dssp CEEEE-ECCTTSCHHHHHHHHHHHHHT-TTCCCEEEEHH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHHHh-cCcceEEEehH
Confidence 45555 578899999999999999988 78555566644
No 211
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.79 E-value=0.04 Score=43.11 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=30.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
++++.+ .+.-|+||||++..++..+.. .|.+|+++-.
T Consensus 3 g~i~vi-~G~~gsGKTT~ll~~~~~~~~-~g~~v~~~~~ 39 (184)
T 2orw_A 3 GKLTVI-TGPMYSGKTTELLSFVEIYKL-GKKKVAVFKP 39 (184)
T ss_dssp CCEEEE-EESTTSSHHHHHHHHHHHHHH-TTCEEEEEEE
T ss_pred cEEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCeEEEEee
Confidence 355555 467789999999999999999 9999999843
No 212
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.76 E-value=0.023 Score=48.81 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=32.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC------CCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~------g~~VlliD~D~~ 72 (295)
+.++.| .+..|+||||++.+++...+. . |.+|++||++..
T Consensus 107 G~i~~i-~G~~GsGKT~la~~la~~~~~-~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 107 RTMTEF-FGEFGSGKTQLCHQLSVNVQL-PPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TSEEEE-EESTTSSHHHHHHHHHHHTTS-CGGGTCCSCEEEEEESSSC
T ss_pred CcEEEE-ECCCCCCHhHHHHHHHHHHhc-ccccCCCCCeEEEEECCCC
Confidence 455555 477899999999999998776 5 789999998854
No 213
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.74 E-value=0.04 Score=46.46 Aligned_cols=40 Identities=33% Similarity=0.361 Sum_probs=33.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+++++ +..|+||||++.++|..++...|.+|++++.+.
T Consensus 35 G~~~~i~-G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 35 GEVIMVT-SGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TCEEEEE-ESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CeEEEEE-eCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 4666665 888999999999999999972388999998764
No 214
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.71 E-value=0.056 Score=42.98 Aligned_cols=40 Identities=33% Similarity=0.487 Sum_probs=33.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.+|+|. +..|+||||++..|+..+.. .|.++..|..|..
T Consensus 22 g~~v~I~-G~sGsGKSTl~~~l~~~~~~-~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 22 RQLVALS-GAPGSGKSTLSNPLAAALSA-QGLPAEVVPMDGF 61 (208)
T ss_dssp CEEEEEE-CCTTSCTHHHHHHHHHHHHH-TTCCEEEEESGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhh-cCCceEEEecCCC
Confidence 6788886 88999999999999999988 6877888887753
No 215
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=94.70 E-value=0.057 Score=48.69 Aligned_cols=68 Identities=18% Similarity=0.050 Sum_probs=48.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHH-------HHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI-------DARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.++|+|||+...........+..+|.+|++++.....+. .+.+.+..+...+.+.+.+|+|+.|.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl 157 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS 157 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 567899999997554323344556689999999998875443 45556666666787756689999995
No 216
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.69 E-value=0.032 Score=42.05 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=32.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+..+.++ +..|+||||++..++..+.. .|.+++.++..
T Consensus 36 g~~~~l~-G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVW-GEEGAGKSHLLQAWVAQALE-AGKNAAYIDAA 73 (149)
T ss_dssp CSEEEEE-SSSTTTTCHHHHHHHHHHHT-TTCCEEEEETT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHH
Confidence 4667775 77999999999999999988 89888888654
No 217
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.67 E-value=0.017 Score=44.57 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=24.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+++| +.++-.|+||||++..|+..+ +...+.+|.|
T Consensus 3 ~~~i-~l~G~~GsGKST~a~~La~~l----~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMI-ILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVD 37 (178)
T ss_dssp CCEE-EEECCTTSSHHHHHHHHHHHS----SSCEEEEEHH
T ss_pred ceEE-EEECCCCCCHHHHHHHHHHhc----CCCeEEeccc
Confidence 3444 446889999999999776544 4455666666
No 218
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.66 E-value=0.079 Score=40.91 Aligned_cols=66 Identities=18% Similarity=0.129 Sum_probs=43.7
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.++ .+|+|+.|.
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 139 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDI-VLCGNKSDL 139 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCE-EEEEECTTC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 5789999999654332333445667899999888654 455555555555543 34455 599999985
No 219
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.60 E-value=0.089 Score=40.39 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=46.1
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccCCCCCCCCCc
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCFICPHCSEPS 214 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~~~~~~~~~~ 214 (295)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +.+ +.+|.|+.|.....
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----- 129 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKR----- 129 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCC-----
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccC-----
Confidence 4779999999643322233344557899999888765 3566666665555542 344 45999999853211
Q ss_pred cccCCchhhHHHHHhCCc
Q 022525 215 FIFGKGGTHRTAAEMGLK 232 (295)
Q Consensus 215 ~~~~~~~~~~~~~~~g~~ 232 (295)
........++.+.++.+
T Consensus 130 -~v~~~~~~~~~~~~~~~ 146 (183)
T 2fu5_C 130 -QVSKERGEKLALDYGIK 146 (183)
T ss_dssp -CSCHHHHHHHHHHHTCE
T ss_pred -cCCHHHHHHHHHHcCCe
Confidence 11123455666666643
No 220
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.55 E-value=0.022 Score=43.61 Aligned_cols=33 Identities=33% Similarity=0.502 Sum_probs=24.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+++|.+. +-.|+||||++..|+..| |.. ++|.|
T Consensus 2 ~~~I~l~-G~~GsGKsT~a~~La~~l----g~~--~id~d 34 (173)
T 1e6c_A 2 TEPIFMV-GARGCGMTTVGRELARAL----GYE--FVDTD 34 (173)
T ss_dssp CCCEEEE-SCTTSSHHHHHHHHHHHH----TCE--EEEHH
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHh----CCc--EEccc
Confidence 4667775 678999999999887655 333 56776
No 221
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=94.52 E-value=0.058 Score=48.26 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=49.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|||+...........+..+|.+|+|++........+.+.+..+...+.+.+.+|+|+.|.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence 45779999999754422233445668999999999887655666666667777777766699999984
No 222
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.48 E-value=0.13 Score=39.12 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=40.3
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc---CCCCeeeEEeccccCC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPILGLVENMSCFI 206 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~~ 206 (295)
.+.+.|+|+|+...........+..+|.++++..... .++..+...+..+.. .+.+ +.+|+|+.|..
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 129 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSA 129 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccC
Confidence 4679999999754332333444567899999888765 345555555555543 3344 45999999953
No 223
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.43 E-value=0.089 Score=41.20 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=48.9
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccCCCCCCCCCc
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCFICPHCSEPS 214 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~~~~~~~~~~ 214 (295)
.+.+.|+|+|+...........+..+|.++++..... .++..+...+..+... +.+ +.+|.|+.|.....
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~----- 154 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKK----- 154 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--C-----
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCCccc-----
Confidence 4679999999754432333445567899999987654 4566666666666654 334 45899999853211
Q ss_pred cccCCchhhHHHHHhCC
Q 022525 215 FIFGKGGTHRTAAEMGL 231 (295)
Q Consensus 215 ~~~~~~~~~~~~~~~g~ 231 (295)
.......+++.+.++.
T Consensus 155 -~v~~~~~~~~~~~~~~ 170 (199)
T 3l0i_B 155 -VVDYTTAKEFADSLGI 170 (199)
T ss_dssp -CCCSCC-CHHHHTTTC
T ss_pred -cCCHHHHHHHHHHcCC
Confidence 1112335556665554
No 224
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.39 E-value=0.049 Score=46.36 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=31.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la-~~~g~~VlliD~D 70 (295)
+-+.++ +..|+|||+++..+|..+. . .|.+|+.+.+.
T Consensus 153 ~~lll~-G~~GtGKT~La~aia~~~~~~-~g~~v~~~~~~ 190 (308)
T 2qgz_A 153 KGLYLY-GDMGIGKSYLLAAMAHELSEK-KGVSTTLLHFP 190 (308)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHHH-SCCCEEEEEHH
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEHH
Confidence 455554 7789999999999999999 8 99999988664
No 225
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.35 E-value=0.052 Score=46.19 Aligned_cols=41 Identities=37% Similarity=0.422 Sum_probs=33.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH--HhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la--~~~g~~VlliD~D~~~ 73 (295)
+.+|+++ +..|+||||++..|+..+. - .+.+|.+|++|...
T Consensus 80 g~iigI~-G~~GsGKSTl~~~L~~~l~~~~-~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 80 PYIISIA-GSVAVGKSTTARVLQALLSRWP-EHRRVELITTDGFL 122 (308)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHHTTST-TCCCEEEEEGGGGB
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhCC-CCCeEEEEecCCcc
Confidence 6788886 7889999999999998886 4 45679999988654
No 226
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.27 E-value=0.12 Score=40.29 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=44.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++..... .++..+...+..+... +.+ +.+|+|+.|.
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl 140 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDL 140 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 45789999999754332333445667899988887654 4566666666655543 344 4599999985
No 227
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.27 E-value=0.15 Score=42.19 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=35.7
Q ss_pred CCccEEEEcCCCCCCccch---hhhhhc------cCceEEEeeCCCcchHHHH-HHHHHHHhcC---CC-CeeeEEeccc
Q 022525 138 GNLDILVIDMPPGTGDAQL---TTTQTL------QLSGALIVSTPQDVALIDA-RKGITMFSKV---QV-PILGLVENMS 203 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~---~~~~l~------~ad~viiv~~~~~~s~~~~-~~~~~~l~~~---~~-~~~~~ViN~~ 203 (295)
....+.|+|||+..+.... ....+. .+|.+++|...+...+... ...++.+... +. ..+.+|+|+.
T Consensus 82 ~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~ 161 (262)
T 3def_A 82 GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161 (262)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECT
T ss_pred CCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCc
Confidence 4567999999964321111 111111 5788888865544323222 2334444332 11 2445899999
Q ss_pred cC
Q 022525 204 CF 205 (295)
Q Consensus 204 ~~ 205 (295)
+.
T Consensus 162 Dl 163 (262)
T 3def_A 162 QF 163 (262)
T ss_dssp TC
T ss_pred cc
Confidence 85
No 228
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.27 E-value=0.065 Score=45.90 Aligned_cols=42 Identities=31% Similarity=0.328 Sum_probs=33.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHh-CCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~-~g~~VlliD~D~~~ 73 (295)
+.+|+|. +..|+||||++..|+..+... .+.+|.+|..|...
T Consensus 92 p~iigI~-GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 92 PYIIGIA-GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 4677775 888999999999999888740 25689999998654
No 229
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.25 E-value=0.21 Score=37.74 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=40.2
Q ss_pred CccEEEEcCCCCCC--ccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhcC----CCCeeeEEeccccCC
Q 022525 139 NLDILVIDMPPGTG--DAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKV----QVPILGLVENMSCFI 206 (295)
Q Consensus 139 ~yD~iiiD~~~~~~--~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~~ 206 (295)
.+.+.++|+|+... ........+..+|.++++...+ ..++..+...+..+.+. +.++ .+|.|+.|..
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pi-ilv~NK~Dl~ 124 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPI-ILVGNKADLA 124 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCE-EEEEECTTCT
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCE-EEEEEChhhc
Confidence 46789999996433 1122233344578888877665 45666666666666543 4555 4999999853
No 230
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.24 E-value=0.1 Score=41.34 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=50.2
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC---CCCeeeEEeccccCCCCCCCCCc
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPILGLVENMSCFICPHCSEPS 214 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~~~~~~~~~~ 214 (295)
.+.+.|+|+|+...........+..+|.+|+|..... .++..+...++.+... ....+.+|+|+.|....
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~------ 156 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ------ 156 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG------
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc------
Confidence 5779999999643322233445567899999888654 3455555444444331 12345599999985311
Q ss_pred cccCCchhhHHHHHhCCc
Q 022525 215 FIFGKGGTHRTAAEMGLK 232 (295)
Q Consensus 215 ~~~~~~~~~~~~~~~g~~ 232 (295)
........+++.+.++.+
T Consensus 157 ~~v~~~~~~~~~~~~~~~ 174 (217)
T 2f7s_A 157 REVNERQARELADKYGIP 174 (217)
T ss_dssp CCSCHHHHHHHHHHTTCC
T ss_pred cccCHHHHHHHHHHCCCc
Confidence 111123455666666543
No 231
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.14 E-value=0.062 Score=50.27 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=33.6
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++.+|.|+ +-.|+||||++..|+..|.+ +|.+++.+|.|.
T Consensus 51 ~g~lIvLt-GlsGSGKSTlAr~La~~L~~-~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLT-GLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEESHHH
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHHh-cCCeEEEechHH
Confidence 35666664 77899999999999999999 899998888664
No 232
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=94.07 E-value=0.023 Score=50.59 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=41.6
Q ss_pred CCeEEEEee---CCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC
Q 022525 30 VKDVIAVAS---GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85 (295)
Q Consensus 30 ~~~vI~i~s---~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~ 85 (295)
.+|.|.|++ .+-|.||||++..|+.+|.+ .|+++.+. ..+|++--.||++..
T Consensus 42 ~GklIlVTaItPTPaGEGKtTttiGL~~aL~~-lgk~~~~~---lRePSlGP~FGiKGG 96 (543)
T 3do6_A 42 DGKLILVTAVTPTPAGEGKTTTSIGLSMSLNR-IGKKSIVT---LREPSLGPTLGLKGG 96 (543)
T ss_dssp CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHH-TTCCEEEE---ECCCCHHHHHHSCCS
T ss_pred CCeEEEEEecCCCCCCCCccchHHHHHHHHHh-cCCeeEEE---EecCCCCCcCCcccc
Confidence 467776654 57899999999999999999 99998654 456777777888764
No 233
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.06 E-value=0.17 Score=39.59 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=53.3
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc---CCCCeeeEEeccccCCCCCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPILGLVENMSCFICPHCSEP 213 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~~~~~~~~~ 213 (295)
..+.+.|+|+|+...........+..+|.+|++..... .++..+...+..+.. .+.++ .+|+|+.+.....
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~---- 129 (203)
T 1zbd_A 55 KRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQV-LLVGNKCDMEDER---- 129 (203)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEE-EEEEECTTCTTSC----
T ss_pred eEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECcccCccc----
Confidence 35779999999644322333444567899998888754 355666665555554 24444 5999999853211
Q ss_pred ccccCCchhhHHHHHhCCc
Q 022525 214 SFIFGKGGTHRTAAEMGLK 232 (295)
Q Consensus 214 ~~~~~~~~~~~~~~~~g~~ 232 (295)
........++.+.++.+
T Consensus 130 --~~~~~~~~~~~~~~~~~ 146 (203)
T 1zbd_A 130 --VVSSERGRQLADHLGFE 146 (203)
T ss_dssp --CSCHHHHHHHHHHHTCE
T ss_pred --ccCHHHHHHHHHHCCCe
Confidence 11223456666666654
No 234
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.04 E-value=0.65 Score=40.17 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=39.8
Q ss_pred CccEEEEcCCCCCCccch--------hh-hhhccCceEEEeeCCCcc---hHHHHHHHHHHHhc-C-CCCeeeEEecccc
Q 022525 139 NLDILVIDMPPGTGDAQL--------TT-TQTLQLSGALIVSTPQDV---ALIDARKGITMFSK-V-QVPILGLVENMSC 204 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~--------~~-~~l~~ad~viiv~~~~~~---s~~~~~~~~~~l~~-~-~~~~~~~ViN~~~ 204 (295)
.+++.++|||+....... .. .....+|.+++|.+.+.. +.......+..+.. . +.++ .+|.|+.|
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pi-ilV~NK~D 291 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPF-LVVINKID 291 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCE-EEEECCTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCE-EEEEECcc
Confidence 456899999965432111 01 112247889988885543 45665566665544 2 4454 49999988
Q ss_pred C
Q 022525 205 F 205 (295)
Q Consensus 205 ~ 205 (295)
.
T Consensus 292 l 292 (357)
T 2e87_A 292 V 292 (357)
T ss_dssp T
T ss_pred c
Confidence 3
No 235
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.03 E-value=0.45 Score=39.42 Aligned_cols=40 Identities=10% Similarity=-0.004 Sum_probs=23.3
Q ss_pred CceEEEeeCCCcch-HHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 164 LSGALIVSTPQDVA-LIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 164 ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+|.+++++.+.... ...-...++.+.. +.+++ +|+|+.|.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi-~V~nK~D~ 156 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNII-PLIAKADT 156 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEE-EEESSGGG
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEE-EEEeccCC
Confidence 55666666555422 2233445566655 55554 89999884
No 236
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.01 E-value=0.031 Score=43.09 Aligned_cols=34 Identities=41% Similarity=0.387 Sum_probs=23.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
|+.|++. +..|+||||++..||..+.- .++|.|.
T Consensus 4 m~~i~i~-G~~GsGKsTla~~La~~l~~------~~~d~d~ 37 (175)
T 1via_A 4 AKNIVFI-GFMGSGKSTLARALAKDLDL------VFLDSDF 37 (175)
T ss_dssp -CCEEEE-CCTTSCHHHHHHHHHHHHTC------EEEEHHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHcCC------CEEcccH
Confidence 4556664 88999999999988765532 4567663
No 237
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.00 E-value=0.09 Score=40.86 Aligned_cols=34 Identities=35% Similarity=0.351 Sum_probs=27.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
+|++. +-.|+||||++..|+..+.. .|..++-.|
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~-~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFE-GIDGSGKTTQAKKLYEYLKQ-KGYFVSLYR 35 (195)
T ss_dssp EEEEE-CSTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 35554 77899999999999999988 898876443
No 238
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.97 E-value=0.079 Score=47.42 Aligned_cols=67 Identities=6% Similarity=-0.004 Sum_probs=41.1
Q ss_pred CccEEEEcCCCCCCcc-------c----hhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 139 NLDILVIDMPPGTGDA-------Q----LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~-------~----~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
+..+.|+|||+..... . .....+..+|.++++.+..........+.+..+...+.++ .+|+|+.|..
T Consensus 222 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~i-iiv~NK~Dl~ 299 (436)
T 2hjg_A 222 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAV-VIVVNKWDAV 299 (436)
T ss_dssp TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEE-EEEEECGGGS
T ss_pred CeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcE-EEEEECccCC
Confidence 4458899998531100 1 1223456789999888876643333345566666666665 4999999853
No 239
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.97 E-value=0.036 Score=46.16 Aligned_cols=68 Identities=9% Similarity=0.024 Sum_probs=36.3
Q ss_pred CCccEEEEcCCCCCCccchh---hhh------hccCceEEEeeCCCcchHHH-HHHHHHHHhcC-CC---CeeeEEeccc
Q 022525 138 GNLDILVIDMPPGTGDAQLT---TTQ------TLQLSGALIVSTPQDVALID-ARKGITMFSKV-QV---PILGLVENMS 203 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~---~~~------l~~ad~viiv~~~~~~s~~~-~~~~~~~l~~~-~~---~~~~~ViN~~ 203 (295)
..+.+.|+|||+........ ... ...+|.+++|...+..++.. ....++.+... +. ..+.+|+|+.
T Consensus 85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~ 164 (270)
T 1h65_A 85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164 (270)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECC
T ss_pred CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECc
Confidence 45779999999642211110 011 12578898885544433322 22444444332 22 2345999999
Q ss_pred cC
Q 022525 204 CF 205 (295)
Q Consensus 204 ~~ 205 (295)
+.
T Consensus 165 Dl 166 (270)
T 1h65_A 165 QF 166 (270)
T ss_dssp SC
T ss_pred cc
Confidence 84
No 240
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=93.95 E-value=0.046 Score=49.43 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=42.7
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchH-------HHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL-------IDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.+.|+|||+...........+..+|.+|+|++.....+ ..+.+.+..+...+.+.+.+++|+.|.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 45779999999754432333444567999999998876532 245555666666788755699999995
No 241
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.90 E-value=0.098 Score=40.82 Aligned_cols=34 Identities=38% Similarity=0.290 Sum_probs=27.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
.|++. +--|+||||++..|+..|.. .|.+|+..+
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~-~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFE-GIDGSGKSTQIQLLAQYLEK-RGKKVILKR 35 (197)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHHHH-CCC-EEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEee
Confidence 35554 77889999999999999999 899987554
No 242
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.87 E-value=0.025 Score=43.94 Aligned_cols=33 Identities=45% Similarity=0.517 Sum_probs=23.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++|.+ .+-.|+||||++..||..+ |.. ++|.|.
T Consensus 3 ~~I~l-~G~~GsGKsT~a~~La~~l----g~~--~id~D~ 35 (184)
T 2iyv_A 3 PKAVL-VGLPGSGKSTIGRRLAKAL----GVG--LLDTDV 35 (184)
T ss_dssp CSEEE-ECSTTSSHHHHHHHHHHHH----TCC--EEEHHH
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHc----CCC--EEeCch
Confidence 45555 4888999999999887655 434 567774
No 243
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.87 E-value=0.063 Score=43.05 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=29.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
+.+..+ .+.-|+||||....++..+.. +|.+|+++-
T Consensus 28 G~I~vi-tG~M~sGKTT~Llr~~~r~~~-~g~kvli~k 63 (219)
T 3e2i_A 28 GWIECI-TGSMFSGKSEELIRRLRRGIY-AKQKVVVFK 63 (219)
T ss_dssp CEEEEE-EECTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCceEEEE
Confidence 455555 566899999999999999988 999999994
No 244
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.87 E-value=0.17 Score=41.72 Aligned_cols=90 Identities=10% Similarity=0.010 Sum_probs=56.4
Q ss_pred CCccEEEEcCCCCCCccc------hhhhhh--ccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQ------LTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPH 209 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~------~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~ 209 (295)
..+.+.|+|+|+..+... +....+ ..+|.+++|.+.... .........+...+.+++ +|+||.|.....
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvi-lv~NK~Dl~~~~ 126 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVI-LAMTAIDEAKKT 126 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEE-EEEECHHHHHHT
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEE-EEEECcCCCCcc
Confidence 457899999997544221 112222 368999999887653 333445566666777765 999999842111
Q ss_pred CCCCccccCCchhhHHHHHhCCcEEEee
Q 022525 210 CSEPSFIFGKGGTHRTAAEMGLKVIGEI 237 (295)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~g~~~~~~I 237 (295)
.. ....+++.+.+|.+++.+-
T Consensus 127 ------~i-~~~~~~l~~~lg~~vi~~S 147 (258)
T 3a1s_A 127 ------GM-KIDRYELQKHLGIPVVFTS 147 (258)
T ss_dssp ------TC-CBCHHHHHHHHCSCEEECC
T ss_pred ------ch-HHHHHHHHHHcCCCEEEEE
Confidence 01 1236788888898877533
No 245
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.86 E-value=0.05 Score=45.92 Aligned_cols=40 Identities=25% Similarity=0.168 Sum_probs=30.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCC--CeEEEE-EeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ--LKVGLL-DADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g--~~Vlli-D~D~~ 72 (295)
+.+|+|. +..|+||||++..|+..+.. .| .++..+ ..|..
T Consensus 31 ~~ii~I~-G~sGsGKSTla~~L~~~l~~-~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 31 PLFIFFS-GPQGSGKSFTSIQIYNHLME-KYGGEKSIGYASIDDF 73 (290)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHH-HHGGGSCEEEEEGGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhhh-cCCCCceEEEeccccc
Confidence 5777775 88899999999999999987 55 444444 77754
No 246
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.79 E-value=0.078 Score=48.64 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=34.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++.+.++.+-.|+||||++..||..|.. .+.++.+++.|-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~-~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW-IGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh-cCCCeEEecccH
Confidence 4555566789999999999999999998 899999998884
No 247
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.78 E-value=0.073 Score=49.41 Aligned_cols=39 Identities=31% Similarity=0.245 Sum_probs=32.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g-~~VlliD~D~ 71 (295)
+.+|.|. +-.|+||||++..|+..|.. .| .++.++|.|.
T Consensus 396 ~~~I~l~-GlsGSGKSTiA~~La~~L~~-~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLT-GYMNSGKDAIARALQVTLNQ-QGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHH-HCSSCEEEEEHHH
T ss_pred ceEEEee-cCCCCCHHHHHHHHHHHhcc-cCCceEEEECcHH
Confidence 5666665 67779999999999999998 78 8999998774
No 248
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.76 E-value=0.078 Score=44.26 Aligned_cols=39 Identities=36% Similarity=0.339 Sum_probs=29.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC----------CCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC----------QLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~----------g~~VlliD~D~ 71 (295)
+.++.++ +..|+||||++..++..++. . +.+|++++...
T Consensus 30 G~i~~i~-G~~GsGKTtl~~~l~~~~~~-g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALV-SPGGAGKSMLALQLAAQIAG-GPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHT-CCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHhc-CCCcCCCccCCCccEEEEECCC
Confidence 4666665 88999999999999997765 3 35677776553
No 249
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.73 E-value=0.1 Score=41.27 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=29.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
+++|++. +--|+||||++..|+..+.. .+.++.++.
T Consensus 10 ~~~I~l~-G~~GsGKST~~~~L~~~l~~-~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFE-GLDRSGKSTQSKLLVEYLKN-NNVEVKHLY 45 (212)
T ss_dssp SCEEEEE-ESTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHH-cCCcEEEEe
Confidence 4667775 66789999999999999998 888885443
No 250
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.62 E-value=0.092 Score=41.62 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=29.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
+++|++. +-.|+||||++..|+..|.. .|.+|..+
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~L~~~l~~-~~~~v~~~ 43 (215)
T 1nn5_A 9 GALIVLE-GVDRAGKSTQSRKLVEALCA-AGHRAELL 43 (215)
T ss_dssp CCEEEEE-ESTTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCcEEEe
Confidence 4667665 66899999999999999998 89888544
No 251
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.61 E-value=0.051 Score=42.25 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
++++|++. +-.|+||||++..|+..+ |. ..+|.|
T Consensus 5 ~~~~I~l~-G~~GsGKsT~~~~L~~~l----~~--~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVL-GGPGSGKGTQCANIVRDF----GW--VHLSAG 38 (194)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHHHH----CC--EEEEHH
T ss_pred cCcEEEEE-CCCCCCHHHHHHHHHHHh----CC--eEeeHH
Confidence 35666665 778999999998777654 43 456765
No 252
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.59 E-value=0.12 Score=41.50 Aligned_cols=36 Identities=31% Similarity=0.331 Sum_probs=30.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
++.|+|. +--|+||||.+..|+..|.. .|.+|....
T Consensus 6 g~~i~~e-G~~gsGKsT~~~~l~~~l~~-~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLE-GPEGAGKSTNRDYLAERLRE-RGIEVQLTR 41 (213)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHT-TTCCEEEEE
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHHHH-cCCCccccc
Confidence 5667664 78899999999999999999 999997653
No 253
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.57 E-value=0.053 Score=44.72 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=23.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++|+| .+..|+||||++..||..+ |. .+|+.|.
T Consensus 2 ~li~I-~G~~GSGKSTla~~La~~~----~~--~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLI-YGPTCSGKTDMAIQIAQET----GW--PVVALDR 34 (253)
T ss_dssp EEEEE-ECCTTSSHHHHHHHHHHHH----CC--CEEECCS
T ss_pred eEEEE-ECCCCcCHHHHHHHHHhcC----CC--eEEeccH
Confidence 55555 5889999999999887644 33 3567774
No 254
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.54 E-value=0.038 Score=42.35 Aligned_cols=33 Identities=39% Similarity=0.511 Sum_probs=23.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+++|+++ +..|+||||++..||..+ |. ..+|.|
T Consensus 4 ~~~i~l~-G~~GsGKSTl~~~La~~l----~~--~~id~d 36 (173)
T 1kag_A 4 KRNIFLV-GPMGAGKSTIGRQLAQQL----NM--EFYDSD 36 (173)
T ss_dssp CCCEEEE-CCTTSCHHHHHHHHHHHT----TC--EEEEHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHh----CC--CEEecc
Confidence 4567665 778999999988776543 43 456766
No 255
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.53 E-value=0.097 Score=41.32 Aligned_cols=34 Identities=32% Similarity=0.263 Sum_probs=26.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
+++|+| .+-.|+||||++..|+..+.. .| +|+..
T Consensus 4 ~~~I~i-~G~~GsGKsT~~~~L~~~l~~-~g-~~~~~ 37 (213)
T 2plr_A 4 GVLIAF-EGIDGSGKSSQATLLKDWIEL-KR-DVYLT 37 (213)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHHTT-TS-CEEEE
T ss_pred CeEEEE-EcCCCCCHHHHHHHHHHHHhh-cC-CEEEe
Confidence 356666 477899999999999999987 77 76443
No 256
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=93.51 E-value=0.081 Score=49.34 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=47.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..|.+.|+|||+..+........+..+|.+|+|++........+...+..+...+.+++ +|+|+.|.
T Consensus 69 ~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiI-vViNKiDl 135 (599)
T 3cb4_D 69 ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVV-PVLNKIDL 135 (599)
T ss_dssp CEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEE-EEEECTTS
T ss_pred CeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EeeeccCc
Confidence 45889999999766543444556778999999998766433344444555555677754 99999984
No 257
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=93.50 E-value=0.12 Score=46.82 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=48.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch-------HHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-------LIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.++|+|||+...........+..+|.+|++++.+... .......+..+...+.+.+.+|+|+.|.
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl 183 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 183 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc
Confidence 5688999999965443334455567899999999887642 2355566666666777656699999985
No 258
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.49 E-value=0.059 Score=46.13 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=25.8
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
|.++|.+ .+..|+||||++..||..+ + ..+||+|..
T Consensus 4 m~~~i~i-~GptGsGKTtla~~La~~l----~--~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFL-MGPTAAGKTDLAMALADAL----P--CELISVDSA 39 (323)
T ss_dssp CCEEEEE-ECCTTSCHHHHHHHHHHHS----C--EEEEEECTT
T ss_pred CCcEEEE-ECCCCCCHHHHHHHHHHHc----C--CcEEeccch
Confidence 3455555 5889999999999876543 3 467888854
No 259
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.45 E-value=0.091 Score=40.29 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=25.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+|+++ +..|+||||++..|+..+ |. ..+|.|.
T Consensus 8 g~~i~l~-G~~GsGKSTl~~~l~~~~----g~--~~i~~d~ 41 (175)
T 1knq_A 8 HHIYVLM-GVSGSGKSAVASEVAHQL----HA--AFLDGDF 41 (175)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHH----TC--EEEEGGG
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHhh----Cc--EEEeCcc
Confidence 5777775 778999999999887655 32 4677764
No 260
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.32 E-value=0.051 Score=42.87 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=24.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+++|+++ +..|+||||++..||..+ |.. .+|.|.
T Consensus 25 ~~~i~l~-G~~GsGKsTl~~~La~~l----~~~--~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLT-GYMGAGKTTLGKAFARKL----NVP--FIDLDW 58 (199)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH----TCC--EEEHHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc----CCC--EEcchH
Confidence 4667665 889999999999888766 333 456663
No 261
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.29 E-value=0.17 Score=38.33 Aligned_cols=66 Identities=17% Similarity=0.081 Sum_probs=42.2
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.++++..... .++..+...+..+.. .+.++ .+|+|+.|.
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl 131 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVII-MLVGNKTDL 131 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEE-EEEEECGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECCcc
Confidence 4679999999643322333344567899999888754 355555555554443 24444 599999985
No 262
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.27 E-value=0.15 Score=39.87 Aligned_cols=87 Identities=9% Similarity=0.005 Sum_probs=49.2
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc------CCCCeeeEEeccccCCCCCCC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK------VQVPILGLVENMSCFICPHCS 211 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~------~~~~~~~~ViN~~~~~~~~~~ 211 (295)
.+.+.|+|+|+...........+..+|.++++..... .++..+...+..+.. .+.+ +.+|+|+.|....
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~--- 147 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQ--- 147 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC--------
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchh---
Confidence 5789999999643221223334556899988888754 355666666666654 2344 4599999985320
Q ss_pred CCccccCCchhhHHHHHhCC
Q 022525 212 EPSFIFGKGGTHRTAAEMGL 231 (295)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~g~ 231 (295)
..........++.+.++.
T Consensus 148 --~~~v~~~~~~~~~~~~~~ 165 (208)
T 2yc2_C 148 --RHQVRLDMAQDWATTNTL 165 (208)
T ss_dssp ----CCCHHHHHHHHHHTTC
T ss_pred --hccCCHHHHHHHHHHcCC
Confidence 011112345666666663
No 263
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.24 E-value=0.092 Score=44.77 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=31.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
..+.++ +..|+||||++..++..+.. .+.+++.+++.
T Consensus 38 ~~lll~-G~~GtGKT~la~~i~~~~~~-~~~~~~~i~~~ 74 (324)
T 1l8q_A 38 NPIFIY-GSVGTGKTHLLQAAGNEAKK-RGYRVIYSSAD 74 (324)
T ss_dssp SSEEEE-CSSSSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHHHH-CCCEEEEEEHH
Confidence 455554 67899999999999999999 89999999865
No 264
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.19 E-value=0.12 Score=39.76 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=21.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALAS 58 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~ 58 (295)
..+.+ .+..|+|||+++..++..+..
T Consensus 44 ~~~ll-~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVL-IGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEE-ECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEE-ECCCCCCHHHHHHHHHHHHHh
Confidence 44544 588899999999999998876
No 265
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.17 E-value=0.18 Score=38.87 Aligned_cols=67 Identities=13% Similarity=-0.057 Sum_probs=35.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc--hHHHHHHHHHHHhc--CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV--ALIDARKGITMFSK--VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~--s~~~~~~~~~~l~~--~~~~~~~~ViN~~~~ 205 (295)
..+.+.|.|+++...........+..+|.++++...+.. ++..+...+..+.. .+.++ .+|.|+.|.
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 124 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPV-ILVGTHLDV 124 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEE-EEEEECGGG
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcE-EEEEECCCc
Confidence 456788999985221111112223457877777665442 45555554444433 24444 478899883
No 266
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.17 E-value=0.083 Score=45.68 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=31.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~-----~g~~VlliD~D~~ 72 (295)
+.++.| .+..|+||||++.++|...+.. .|.+|++||++..
T Consensus 122 G~i~~I-~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 122 MAITEA-FGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SEEEEE-ECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 345554 5888999999999999875431 2789999998864
No 267
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.16 E-value=0.41 Score=36.23 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=42.2
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHH----hcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMF----SKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l----~~~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.++++...... ++..+...+..+ ...+.++ .+|+|+.|.
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 126 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV-VLVGNKADL 126 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCE-EEEEECGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 46789999997543323334445578988888876653 555555544444 2235555 499999985
No 268
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.06 E-value=0.14 Score=41.63 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=31.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la-~~~g~~VlliD~D~ 71 (295)
+.++++. +..|+||||+...++.... . .+..+++++.+.
T Consensus 30 G~~~~l~-GpnGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLT-GGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEE-CCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 5788875 7899999999999997665 5 678888887654
No 269
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.03 E-value=0.49 Score=35.30 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=44.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc---CCCCeeeEEeccccCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK---VQVPILGLVENMSCFI 206 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~~ 206 (295)
..+.+.|+|+|+...........+..+|.++++...+.. ++..+...+..+.. .+.+ +.+|.|+.|..
T Consensus 50 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 121 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXL 121 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcc
Confidence 346799999997543323344456678999998876553 56666555555543 2334 45999999854
No 270
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.02 E-value=0.058 Score=41.15 Aligned_cols=34 Identities=41% Similarity=0.581 Sum_probs=24.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+++|++. +--|+||||++..||..| |.++ +|+|.
T Consensus 7 ~~~i~l~-G~~GsGKSTva~~La~~l----g~~~--id~D~ 40 (168)
T 1zuh_A 7 MQHLVLI-GFMGSGKSSLAQELGLAL----KLEV--LDTDM 40 (168)
T ss_dssp -CEEEEE-SCTTSSHHHHHHHHHHHH----TCCE--EEHHH
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHh----CCCE--EEChH
Confidence 5677775 778899999998776554 4444 67764
No 271
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.01 E-value=0.067 Score=42.17 Aligned_cols=35 Identities=31% Similarity=0.316 Sum_probs=24.9
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
..+++|+|. +-.|+||||++..|+.. .|. ..||+|
T Consensus 13 ~~~~~I~l~-G~~GsGKsT~~~~L~~~----~g~--~~i~~d 47 (203)
T 1ukz_A 13 DQVSVIFVL-GGPGAGKGTQCEKLVKD----YSF--VHLSAG 47 (203)
T ss_dssp TTCEEEEEE-CSTTSSHHHHHHHHHHH----SSC--EEEEHH
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHH----cCc--eEEeHH
Confidence 345677775 78899999999877653 454 456766
No 272
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=92.99 E-value=0.37 Score=46.11 Aligned_cols=68 Identities=21% Similarity=0.044 Sum_probs=41.4
Q ss_pred CCccEEEEcCCCCCCcc--------------chhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcCCCCeeeEEecc
Q 022525 138 GNLDILVIDMPPGTGDA--------------QLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPILGLVENM 202 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~--------------~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~ViN~ 202 (295)
...+++++|||+-.... .+.......+|.+++|+..... ...+...+++.+...+.+.+ +|+|+
T Consensus 148 ~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvI-lVlNK 226 (772)
T 3zvr_A 148 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTI-GVITK 226 (772)
T ss_dssp TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEE-EEEEC
T ss_pred CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEE-EEEeC
Confidence 35679999999533310 0011111357888888766542 23344467777776777765 99999
Q ss_pred ccCC
Q 022525 203 SCFI 206 (295)
Q Consensus 203 ~~~~ 206 (295)
.|..
T Consensus 227 iDlv 230 (772)
T 3zvr_A 227 LDLM 230 (772)
T ss_dssp TTSS
T ss_pred cccC
Confidence 9853
No 273
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.92 E-value=0.066 Score=45.76 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=30.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH------------HhCC----CeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA------------SKCQ----LKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la------------~~~g----~~VlliD~D~~ 72 (295)
+.++.| .+..|+||||++.++|...+ . .| .+|++||++..
T Consensus 98 g~i~~i-~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~-~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 98 QSVTEF-AGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVS-KGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp TEEEEE-EESTTSSHHHHHHHHHHHTTCGGGEECCTTTSC-TTTTSSEEEEEEESSSC
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHhccccccccccccc-cCCCCCceEEEEECCCC
Confidence 355555 57799999999999998753 3 45 79999998864
No 274
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.78 E-value=0.11 Score=42.08 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=30.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~-----~g~~VlliD~D~ 71 (295)
+.++.++ +..|+||||++..++...+.. .+.+|+.||.+.
T Consensus 24 G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMF-GEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4677775 789999999999999864430 167899998875
No 275
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.76 E-value=0.092 Score=39.92 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=22.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++|++ .+-.|+||||++..|+..+ |.. .+|.|.
T Consensus 2 ~~i~l-~G~~GsGKsT~~~~L~~~l----~~~--~i~~d~ 34 (173)
T 3kb2_A 2 TLIIL-EGPDCCFKSTVAAKLSKEL----KYP--IIKGSS 34 (173)
T ss_dssp CEEEE-ECSSSSSHHHHHHHHHHHH----CCC--EEECCC
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHh----CCe--eecCcc
Confidence 44555 5889999999999776544 434 466663
No 276
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.74 E-value=0.4 Score=36.31 Aligned_cols=88 Identities=13% Similarity=0.088 Sum_probs=50.9
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcCC-CCeeeEEeccccCCCCCCCCCccc
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQ-VPILGLVENMSCFICPHCSEPSFI 216 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~-~~~~~~ViN~~~~~~~~~~~~~~~ 216 (295)
.+.+.|+|+|+...........+..+|.++++...+. .++..+...+..+.... ...+.+|+|+.|.... ..
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~ 130 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER------KV 130 (181)
T ss_dssp EEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG------CC
T ss_pred EEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh------cc
Confidence 3679999999743322333444567898888887654 45556555555554422 2334599999984311 11
Q ss_pred cCCchhhHHHHHhCCc
Q 022525 217 FGKGGTHRTAAEMGLK 232 (295)
Q Consensus 217 ~~~~~~~~~~~~~g~~ 232 (295)
........+....+.+
T Consensus 131 ~~~~~~~~~~~~~~~~ 146 (181)
T 3tw8_B 131 VETEDAYKFAGQMGIQ 146 (181)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHcCCe
Confidence 1123355556666644
No 277
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.73 E-value=0.061 Score=45.29 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=25.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
..+.++++-.|+||||++..|+..+ +.....||.|.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~----~~~~~~Is~D~ 68 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET----QGNVIVIDNDT 68 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT----TTCCEEECTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCCeEEEechH
Confidence 4556667999999999999886543 22456777763
No 278
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.45 Score=36.55 Aligned_cols=68 Identities=13% Similarity=0.013 Sum_probs=44.4
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcC---CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKV---QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~---~~~~~~~ViN~~~~ 205 (295)
+.+.+.|+|+|+...........+..+|.+++|.+.+.. ++......+..+.+. ....+.+|.|+.|.
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 357799999997543223334456679999999887654 677777776666542 22344599999984
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.61 E-value=0.077 Score=40.33 Aligned_cols=27 Identities=41% Similarity=0.358 Sum_probs=20.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEE
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVG 65 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vl 65 (295)
+|++ .+..|+||||++..| .+ .|..++
T Consensus 3 ~I~l-~G~~GsGKsT~a~~L----~~-~g~~~i 29 (179)
T 3lw7_A 3 VILI-TGMPGSGKSEFAKLL----KE-RGAKVI 29 (179)
T ss_dssp EEEE-ECCTTSCHHHHHHHH----HH-TTCEEE
T ss_pred EEEE-ECCCCCCHHHHHHHH----HH-CCCcEE
Confidence 4444 588999999999977 56 788764
No 280
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.57 E-value=0.11 Score=39.83 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=21.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALAS 58 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~ 58 (295)
..+ +..+..|+||||++..++..+..
T Consensus 44 ~~v-ll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNP-ILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEE-EEESCGGGCHHHHHHHHHHHHHT
T ss_pred Cce-EEECCCCCCHHHHHHHHHHHHHh
Confidence 344 44588899999999999998876
No 281
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.54 E-value=0.12 Score=53.59 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=35.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+.++.| .+..|+||||++.+++...++ .|.+|++||++...
T Consensus 383 G~lilI-~G~pGsGKTtLaLq~a~~~~~-~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 383 GRIVEI-YGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL 423 (1706)
T ss_dssp TSEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCC
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCch
Confidence 345555 599999999999999999999 99999999998654
No 282
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=92.51 E-value=0.18 Score=47.20 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=49.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch-------HHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-------LIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.++|+|||+...........+..+|.+|+|+..+... ...+...+..+...+.+.+.+|+|+++.
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl 317 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 317 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 5678999999975443333445566799999999987642 2355666666777787766799999984
No 283
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.51 E-value=0.086 Score=40.97 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=23.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+++|++ .+-.|+||||++..|+..+ |.. .||.|
T Consensus 3 ~~~I~l-~G~~GsGKsT~a~~L~~~~----~~~--~i~~d 35 (196)
T 1tev_A 3 PLVVFV-LGGPGAGKGTQCARIVEKY----GYT--HLSAG 35 (196)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHH----CCE--EEEHH
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHh----CCe--EEeHH
Confidence 355665 4889999999999877654 433 46765
No 284
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.49 E-value=0.28 Score=42.73 Aligned_cols=65 Identities=11% Similarity=0.040 Sum_probs=35.3
Q ss_pred ccEEEEcCCCCCCcc--------chhhhhhccCceEEEeeCCCcch---HHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 140 LDILVIDMPPGTGDA--------QLTTTQTLQLSGALIVSTPQDVA---LIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 140 yD~iiiD~~~~~~~~--------~~~~~~l~~ad~viiv~~~~~~s---~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
.++.++||++..... ..+...+..+|.+++|...+... ........+.+.. .+.++ .+|.|+.+.
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~-ilV~NK~Dl 304 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPI-LVTLNKIDK 304 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCE-EEEEECGGG
T ss_pred EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCE-EEEEECCCC
Confidence 557788888543310 01223355789888887765432 2222222333333 34444 599999984
No 285
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.48 E-value=0.12 Score=43.27 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=25.5
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
..+.+|+|+ +..|+||||++..|+ + .|..+ ||+|.
T Consensus 73 ~~~~iI~I~-G~~GSGKSTva~~La----~-lg~~~--id~D~ 107 (281)
T 2f6r_A 73 SGLYVLGLT-GISGSGKSSVAQRLK----N-LGAYI--IDSDH 107 (281)
T ss_dssp TTCEEEEEE-ECTTSCHHHHHHHHH----H-HTCEE--EEHHH
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHH----H-CCCcE--EehhH
Confidence 345677775 788999999998777 3 46554 78874
No 286
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.47 E-value=0.099 Score=47.71 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=32.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHH-hCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALAS-KCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~-~~g~~VlliD~D~ 71 (295)
+.+|.++ +-.|+||||++..||..|.. ..|+.+-++|.|.
T Consensus 395 ~~~I~l~-GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 395 GFSIVLG-NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CEEEEEC-TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ceEEEec-ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4666665 66799999999999999984 2567888898886
No 287
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.44 E-value=0.13 Score=53.45 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=34.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+.+|.| .+..|+||||++.++|..++. .|.+|+++++....
T Consensus 732 G~lVlI-~G~PG~GKTtLal~lA~~aa~-~g~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 732 GRIVEI-YGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL 772 (1706)
T ss_dssp TSEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCC
T ss_pred CceEEE-ECCCCCCcHHHHHHHHHHHHH-cCCCeEEEeccchH
Confidence 345555 589999999999999999999 99999999887543
No 288
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.44 E-value=0.3 Score=37.68 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=40.7
Q ss_pred CccEEEEcCCCCCCcc-chhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDA-QLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~-~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+..... ......+..+|.+++|..... .++..+...++.+.+ .+.++ .+|+|+.|.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 139 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR-ILVGNKCDL 139 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCE-EEEEECTTC
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 4679999999643211 222334557899999888654 344555444444432 34554 499999985
No 289
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.39 E-value=0.45 Score=36.70 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=41.7
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc------CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK------VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~------~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+++......+ ...+..+|.++++...+. .++..+...+..+.. .+.++ .+|.|+.|.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~nK~Dl 139 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPA-LLLGNKLDM 139 (187)
T ss_dssp EEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEEECGGG
T ss_pred EEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCE-EEEEECcch
Confidence 4577889999964332222 234557898888877653 466666655555543 35555 499999985
No 290
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.38 E-value=0.16 Score=47.11 Aligned_cols=33 Identities=42% Similarity=0.496 Sum_probs=29.5
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
+.++.+-.|+||||++..++..+.. .|.+|+++
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~ 238 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLC 238 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEe
Confidence 4555689999999999999999999 99999987
No 291
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.37 E-value=0.088 Score=41.07 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=24.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+++|++. +-.|+||||++..||..+ |.. .+|.|
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~La~~l----~~~--~i~~d 41 (196)
T 2c95_A 9 TNIIFVV-GGPGSGKGTQCEKIVQKY----GYT--HLSTG 41 (196)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH----CCE--EEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh----CCe--EEcHH
Confidence 4667765 778999999999887655 433 56766
No 292
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.36 E-value=0.53 Score=36.32 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=43.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHH-HHHHHHhcC--CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~-~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+++|..... .++..+. ..+..+... +.++ .+|.|+.|.
T Consensus 64 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 134 (194)
T 2atx_A 64 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPF-LLIGTQIDL 134 (194)
T ss_dssp CEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECTTS
T ss_pred EEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhh
Confidence 34778999999654332333444557899999887654 3465554 455555543 5555 499999985
No 293
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.31 E-value=0.41 Score=39.80 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=53.6
Q ss_pred CccEEEEcCCCCCCcc------chhhhhhc--cCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCCC
Q 022525 139 NLDILVIDMPPGTGDA------QLTTTQTL--QLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPHC 210 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~------~~~~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~~ 210 (295)
.+.+.|+|+|+..... .+....+. .+|.+++|.+... .........++...+.+++ +|+||.|.....
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~i-lv~NK~Dl~~~~- 123 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN--LERNLYLTTQLIETGIPVT-IALNMIDVLDGQ- 123 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEE-EEEECHHHHHHT-
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc--hHhHHHHHHHHHhcCCCEE-EEEEChhhCCcC-
Confidence 3668999999754422 11122222 4899998887655 3344445555666677765 999999842111
Q ss_pred CCCccccCCchhhHHHHHhCCcEEEee
Q 022525 211 SEPSFIFGKGGTHRTAAEMGLKVIGEI 237 (295)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~g~~~~~~I 237 (295)
.. ....+.+.+.+|.+++.+-
T Consensus 124 -----~~-~~~~~~l~~~lg~~vi~~S 144 (272)
T 3b1v_A 124 -----GK-KINVDKLSYHLGVPVVATS 144 (272)
T ss_dssp -----TC-CCCHHHHHHHHTSCEEECB
T ss_pred -----Cc-HHHHHHHHHHcCCCEEEEE
Confidence 01 1346777888888776533
No 294
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.29 E-value=0.076 Score=41.55 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=23.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+++|++. +..|+||||++..|+..+.- ..+|.|
T Consensus 12 ~~~I~l~-G~~GsGKsT~a~~L~~~l~~------~~i~~d 44 (199)
T 2bwj_A 12 CKIIFII-GGPGSGKGTQCEKLVEKYGF------THLSTG 44 (199)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHHTC------EEEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHhCC------eEEcHH
Confidence 3566664 78999999999988775532 456765
No 295
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.29 E-value=0.1 Score=44.89 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=25.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
++|+| .+..|+||||++..||..+ + +.+|++|.-
T Consensus 8 ~lI~I-~GptgSGKTtla~~La~~l----~--~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVI-VGPTASGKTELSIEVAKKF----N--GEIISGDSM 41 (340)
T ss_dssp EEEEE-ECSTTSSHHHHHHHHHHHT----T--EEEEECCSS
T ss_pred ceEEE-ECCCcCcHHHHHHHHHHHc----C--Cceeccccc
Confidence 45555 5788999999999887644 3 578999965
No 296
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.28 E-value=0.1 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAV 54 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~ 54 (295)
.++|+|+ +-||+||||+|..++.
T Consensus 152 ~~vv~I~-G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLH-GRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHH
Confidence 5788886 7799999999998875
No 297
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.22 E-value=0.078 Score=39.51 Aligned_cols=32 Identities=22% Similarity=0.059 Sum_probs=25.8
Q ss_pred eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 38 s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.+..|+|||++|..++..... .+...+ +++..
T Consensus 30 ~G~~GtGKt~lA~~i~~~~~~-~~~~~v-~~~~~ 61 (145)
T 3n70_A 30 YGAPGTGRMTGARYLHQFGRN-AQGEFV-YRELT 61 (145)
T ss_dssp ESSTTSSHHHHHHHHHHSSTT-TTSCCE-EEECC
T ss_pred ECCCCCCHHHHHHHHHHhCCc-cCCCEE-EECCC
Confidence 488899999999988877766 677777 87764
No 298
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.20 E-value=0.21 Score=40.69 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=28.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCe-EEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLL 67 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~-Vlli 67 (295)
++.|+|. +-.|+||||.+..|+..|.. .|.+ |.+.
T Consensus 27 ~~~i~~e-G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIE-GLEGAGKSTAIQVVVETLQQ-NGIDHITRT 62 (236)
T ss_dssp CCEEEEE-ESTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHh-cCCCeeeee
Confidence 5677775 66789999999999999999 9999 5444
No 299
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=92.15 E-value=0.091 Score=46.59 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=44.5
Q ss_pred ccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch-HHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-LIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 140 yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
+.+.|+|||+...........+..+|.+++|+..+... ...+.+.+..+...+.+.+.+++|+.|.
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccC
Confidence 67999999964332222334455679999999887543 4555555555665666656689999984
No 300
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=92.10 E-value=0.16 Score=49.37 Aligned_cols=67 Identities=16% Similarity=0.085 Sum_probs=50.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|||+..+........+..+|.+|+|++............+..+...+.+++ +|+|+.|.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-lviNK~D~ 162 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPV-VVINKVDR 162 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEE-EEEECHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeE-EEEECCCc
Confidence 46889999999876644455566778999999998877644455566666666777775 89999984
No 301
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.08 E-value=0.23 Score=39.48 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=27.6
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
|++-|+|= +--|+||||.+..|+..|. .|.+|++.
T Consensus 1 M~kFI~~E-G~dGsGKsTq~~~L~~~L~--~~~~v~~~ 35 (205)
T 4hlc_A 1 MSAFITFE-GPEGSGKTTVINEVYHRLV--KDYDVIMT 35 (205)
T ss_dssp -CEEEEEE-CCTTSCHHHHHHHHHHHHT--TTSCEEEE
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHH--CCCCEEEe
Confidence 45777774 6678999999999999994 48888765
No 302
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.07 E-value=0.14 Score=44.51 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=30.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC--------CCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC--------QLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~--------g~~VlliD~D~ 71 (295)
++.+.+ .+..|+||||++..++..+.. . +..++.+++..
T Consensus 45 ~~~vll-~G~~G~GKT~la~~l~~~~~~-~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 45 KFSNLF-LGLTGTGKTFVSKYIFNEIEE-VKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCEEEE-EECTTSSHHHHHHHHHHHHHH-HHHHSSSSTTCEEEEEEHHH
T ss_pred CCcEEE-ECCCCCCHHHHHHHHHHHHHH-HhhhhcCCCCceEEEEECcc
Confidence 344544 588999999999999999877 5 78888887643
No 303
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.01 E-value=0.24 Score=39.66 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=28.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCC-eEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLL 67 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~-~Vlli 67 (295)
++.|+|- +-.|+||||.+..|+..|.. .|. .|.+.
T Consensus 3 g~~i~~e-G~~gsGKsT~~~~l~~~l~~-~~~~~v~~~ 38 (213)
T 4tmk_A 3 SKYIVIE-GLEGAGKTTARNVVVETLEQ-LGIRDMVFT 38 (213)
T ss_dssp CCEEEEE-ECTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCCcceee
Confidence 5677775 77899999999999999999 898 66443
No 304
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.01 E-value=0.38 Score=37.39 Aligned_cols=67 Identities=12% Similarity=-0.036 Sum_probs=42.3
Q ss_pred CCccEEEEcCCCCCCccchh---hhhhccCceEEEeeCCCcchHHHHHHHHHHHhc-----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLT---TTQTLQLSGALIVSTPQDVALIDARKGITMFSK-----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~---~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~-----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+++........ ...+..+|.+|+|................++.. .+.++ .+|.|+.|.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~pi-ilv~nK~Dl 141 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNF-EVFIHKVDG 141 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEE-EEEEECGGG
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcE-EEEEecccc
Confidence 56889999999754321222 344567999999988877533333444344432 24444 599999984
No 305
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.00 E-value=0.17 Score=40.03 Aligned_cols=38 Identities=42% Similarity=0.481 Sum_probs=29.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+.+|+++ +..|+||||++..|+..+.. ++.+++.|...
T Consensus 6 ~~~i~i~-G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~~~ 43 (211)
T 3asz_A 6 PFVIGIA-GGTASGKTTLAQALARTLGE----RVALLPMDHYY 43 (211)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHGG----GEEEEEGGGCB
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHhCC----CeEEEecCccc
Confidence 5788887 55699999999988776643 57888888643
No 306
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.94 E-value=0.31 Score=38.57 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=41.1
Q ss_pred ccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhc---CCCCeeeEEeccccC
Q 022525 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK---VQVPILGLVENMSCF 205 (295)
Q Consensus 140 yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~---~~~~~~~~ViN~~~~ 205 (295)
+.+.|+|+|+...........+..+|.++++...+.. +.......+..+.. .+.++ .+|+|+.|.
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 129 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPI-VVCANKIDI 129 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCE-EEEEECTTC
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCC
Confidence 7799999996433223334445578999888877653 44444444444433 34555 499999984
No 307
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.89 E-value=0.13 Score=39.30 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=22.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
++| ++.+-.|+||||++..|+.. . .| ...||.|
T Consensus 3 ~~I-~i~G~~GsGKST~a~~L~~~--~-~~--~~~i~~d 35 (181)
T 1ly1_A 3 KII-LTIGCPGSGKSTWAREFIAK--N-PG--FYNINRD 35 (181)
T ss_dssp EEE-EEECCTTSSHHHHHHHHHHH--S-TT--EEEECHH
T ss_pred eEE-EEecCCCCCHHHHHHHHHhh--c-CC--cEEecHH
Confidence 444 44688999999999988762 3 34 4556665
No 308
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.88 E-value=0.2 Score=47.28 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=31.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
+-++++.+..|+|||++.+++...+.+ .|.+||+.-
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~l~~-~~~~ILv~a 240 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQAVK-QGLKVLCCA 240 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEc
Confidence 347788899999999999999999999 999999873
No 309
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.83 E-value=0.21 Score=42.08 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=31.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
.+.+ .+..|+||||++..+|..+.. .+..++.+|+....
T Consensus 49 ~~ll-~G~~GtGKt~la~~la~~~~~-~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 49 SFLF-LGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTEYM 87 (311)
T ss_dssp EEEE-ESCSSSSHHHHHHHHHHHHHS-CGGGEEEEEGGGCC
T ss_pred EEEE-ECCCCcCHHHHHHHHHHHHcC-CCcceEEeeccccc
Confidence 4555 477899999999999999988 78889999887543
No 310
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.82 E-value=0.21 Score=40.78 Aligned_cols=40 Identities=33% Similarity=0.330 Sum_probs=30.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHh----CCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASK----CQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~----~g~~VlliD~D~ 71 (295)
+.+|++. +.-|+||||++.-|+..+... ...++.+++.|.
T Consensus 25 g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 25 PFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 5788887 888999999999988877531 134677888774
No 311
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.81 E-value=0.72 Score=35.51 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=43.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcCC--CCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQ--VPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~--~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+|++..... .++..+...+..+.... ...+.+|+|+.+.
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl 142 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCc
Confidence 45778999999644332334445667898888887654 34555555555555431 2334599999985
No 312
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.79 E-value=0.63 Score=35.77 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=44.8
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc------CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK------VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~------~~~~~~~~ViN~~~~ 205 (295)
+.+.+.|+|+|+...........+..+|.++++.+... .++..+...+..+.+ .+.++ .+|+|+.|.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 138 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPI-LFFANKMDL 138 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeE-EEEEeCcCc
Confidence 35779999999754433333455667899999988765 356666666555543 24444 599999985
No 313
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.69 E-value=0.13 Score=40.53 Aligned_cols=34 Identities=35% Similarity=0.378 Sum_probs=24.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.+|+++ +.-|+||||++..|+..+ |.. +||+|.-
T Consensus 13 ~iIglt-G~~GSGKSTva~~L~~~l----g~~--vid~D~~ 46 (192)
T 2grj_A 13 MVIGVT-GKIGTGKSTVCEILKNKY----GAH--VVNVDRI 46 (192)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH----CCE--EEEHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc----CCE--EEECcHH
Confidence 567776 678999999998766532 644 5788854
No 314
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.66 E-value=0.062 Score=42.63 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=28.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
+|+| .+-.|+||||++..|+..|.. .|.+|.++.
T Consensus 2 ~I~i-~G~~GsGKsTl~~~L~~~l~~-~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAI-EGVDGAGKRTLVEKLSGAFRA-AGRSVATLA 35 (214)
T ss_dssp EEEE-EEEEEEEHHHHHHHHHHHHHE-EEEEEEEEE
T ss_pred EEEE-EcCCCCCHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 4555 477899999999999999998 888888775
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.61 E-value=0.17 Score=39.27 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=19.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
+++|.+ .+-.|+||||++..|+..+
T Consensus 5 ~~~I~l-~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIV-TGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEE-EESTTSSHHHHHHHHHHHH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHc
Confidence 345555 5788999999999887655
No 316
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=91.60 E-value=0.13 Score=45.57 Aligned_cols=67 Identities=10% Similarity=0.158 Sum_probs=44.7
Q ss_pred ccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcch-HHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-LIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 140 yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
+.+.|+|||+...........+..+|.++++++.+... ...+.+.+..++..+.+.+.+++|+.|..
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 67999999964332122233344679999999887543 45555556666666766566999999953
No 317
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.59 E-value=0.092 Score=41.39 Aligned_cols=32 Identities=38% Similarity=0.394 Sum_probs=22.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++|+++ +..|+||||++..|+. .|.. ++|+|.
T Consensus 2 ~~i~i~-G~~GsGKSTl~~~L~~-----~g~~--~i~~d~ 33 (204)
T 2if2_A 2 KRIGLT-GNIGCGKSTVAQMFRE-----LGAY--VLDADK 33 (204)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHH-----TTCE--EEEHHH
T ss_pred eEEEEE-CCCCcCHHHHHHHHHH-----CCCE--EEEccH
Confidence 567775 6789999999886654 4544 467664
No 318
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=91.58 E-value=0.28 Score=43.70 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=44.0
Q ss_pred cEEEEcCCCCCCccch-------hhhhhccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCC
Q 022525 141 DILVIDMPPGTGDAQL-------TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFI 206 (295)
Q Consensus 141 D~iiiD~~~~~~~~~~-------~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~ 206 (295)
.+.|+|||+....... ....+..+|.+++|++.+ ........+..+.+.+.+++ +|+|+.|..
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~--~~~~~~~~l~~l~~~~~piI-vV~NK~Dl~ 153 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA--PTPYEDDVVNLFKEMEIPFV-VVVNKIDVL 153 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSS--CCHHHHHHHHHHHHTTCCEE-EECCCCTTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCC--ChHHHHHHHHHHHhcCCCEE-EEEeCcCCC
Confidence 6899999964432111 233456799999999873 33455677777777787775 999999854
No 319
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.57 E-value=0.29 Score=41.65 Aligned_cols=42 Identities=43% Similarity=0.433 Sum_probs=32.8
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEEeCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVY 72 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g-~~VlliD~D~~ 72 (295)
.+.+|+|. +..|+||||++..|+..+....| .+|.+|..|..
T Consensus 89 ~g~ivgI~-G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 89 VPFIIGVA-GSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEE-CCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 36888886 88899999999999999875134 57888877653
No 320
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.52 E-value=0.17 Score=39.87 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=25.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+|+++ +.-|+||||++..|+..+ |. ..+|.|.
T Consensus 29 g~~i~l~-G~~GsGKSTl~~~L~~~~----g~--~~i~~d~ 62 (200)
T 4eun_A 29 TRHVVVM-GVSGSGKTTIAHGVADET----GL--EFAEADA 62 (200)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH----CC--EEEEGGG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhh----CC--eEEcccc
Confidence 4677775 888999999999888766 32 5567664
No 321
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.34 E-value=0.32 Score=38.31 Aligned_cols=30 Identities=40% Similarity=0.277 Sum_probs=27.0
Q ss_pred eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 38 s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
-+--|+||||.+..|+..|.. .|.+|++..
T Consensus 6 EG~DGsGKsTq~~~L~~~L~~-~g~~v~~tr 35 (197)
T 3hjn_A 6 EGIDGSGKSTQIQLLAQYLEK-RGKKVILKR 35 (197)
T ss_dssp ECSTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHH-CCCcEEEEE
Confidence 477799999999999999999 999998764
No 322
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.32 E-value=0.19 Score=53.06 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=34.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+.++.| .+..|+||||++.++|..+++ .|.+|++||+....
T Consensus 383 G~lilI-~G~pGsGKTtLaLqia~~~a~-~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 383 GRIVEI-YGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL 423 (2050)
T ss_dssp TSEEEE-ECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCC
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEcCCCH
Confidence 344444 599999999999999999999 99999999988644
No 323
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.31 E-value=0.11 Score=40.93 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=24.8
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 36 i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+..+..|+|||+++..++..+.. .+..+..+..+
T Consensus 42 ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~ 75 (226)
T 2chg_A 42 LFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMN 75 (226)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHhc-cccccceEEec
Confidence 44588899999999999999876 55444334433
No 324
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.24 E-value=0.54 Score=36.42 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=42.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+++|.+... .++..+...+..+... +.+ +.+|.|+.|.
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl 142 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDM 142 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCC
Confidence 45789999999643322333344567899988887654 4577776666655432 444 4599999984
No 325
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.98 E-value=0.2 Score=39.28 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=24.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
++.|++. +-.|+||||++..|+..+ .|.+++.++
T Consensus 4 ~~~I~l~-G~~GsGKsT~~~~L~~~l---~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFE-GLDKSGKTTQCMNIMESI---PANTIKYLN 37 (204)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHTS---CGGGEEEEE
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHH---CCCceEEEe
Confidence 4667775 778999999999776554 256776554
No 326
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.96 E-value=0.3 Score=43.95 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=28.4
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCC-eEEEE
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLL 67 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~-~Vlli 67 (295)
..++.+..|+||||++..++..|.. .|. +|+++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~-~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIS-TGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh-cCCceEEEe
Confidence 5566789999999999999999999 787 77776
No 327
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.96 E-value=0.23 Score=43.02 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=31.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHH--hC---CCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALAS--KC---QLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~--~~---g~~VlliD~D~ 71 (295)
+.++.|+ +..|+||||++..++..++. .. |.+|+.||...
T Consensus 131 G~i~~I~-G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 131 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 5777776 67799999999999988743 02 46889998764
No 328
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.95 E-value=0.44 Score=36.63 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=43.5
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
+.+.+.|+|+|+...........+..+|.+++|.+.+. .++......+..+... +.+ +.+|+|+.|.
T Consensus 64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 135 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDL 135 (189)
T ss_dssp TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCC
Confidence 35779999999643322333344557899988888654 3567666655555432 344 4599999984
No 329
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.87 E-value=0.2 Score=43.31 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=31.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC---CCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC---QLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~---g~~VlliD~D~ 71 (295)
+..+.| .+..|+||||++..++..+.. . +..++.+++..
T Consensus 45 ~~~vli-~G~~G~GKTtl~~~l~~~~~~-~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 45 PNNIFI-YGLTGTGKTAVVKFVLSKLHK-KFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCEEE-EECTTSSHHHHHHHHHHHHHH-HTCSSCEEEEEEHHH
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHHHH-HhcCCceEEEEECCC
Confidence 345555 488999999999999998887 5 77888888653
No 330
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.85 E-value=0.16 Score=43.25 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=24.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
++|+ +++..|+||||++..||..+ ...+|++|..
T Consensus 4 ~~i~-i~GptgsGKt~la~~La~~~------~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVA-IVGPTAVGKTKTSVMLAKRL------NGEVISGDSM 37 (322)
T ss_dssp EEEE-EECCTTSCHHHHHHHHHHTT------TEEEEECCGG
T ss_pred cEEE-EECCCcCCHHHHHHHHHHhC------ccceeecCcc
Confidence 4554 46888999999999876543 2467888854
No 331
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.82 E-value=0.19 Score=43.52 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=29.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC------CCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~------g~~VlliD~D~ 71 (295)
+..+.| .+..|+||||++..++..+.. . +..++.+++..
T Consensus 44 ~~~vll-~G~~G~GKT~l~~~~~~~~~~-~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 44 PSNALL-YGLTGTGKTAVARLVLRRLEA-RASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCEEE-CBCTTSSHHHHHHHHHHHHHH-HHHHHTCCEEEEEEETTT
T ss_pred CCcEEE-ECCCCCCHHHHHHHHHHHHHH-HHhccCCCeEEEEEECCc
Confidence 344544 588999999999999999876 4 66777777654
No 332
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.73 E-value=0.23 Score=52.40 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=34.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
++.|.+ .+..|+|||++|.+++...++ +|.+|++||++..
T Consensus 1427 g~~vll-~GppGtGKT~LA~ala~ea~~-~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEI-YGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEE-ECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSC
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCcEEEEEcccc
Confidence 344444 588999999999999999999 9999999998854
No 333
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.71 E-value=0.12 Score=42.43 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=26.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.+|.+ .+..|+||||++..|+..+ +..+.++|.|.-
T Consensus 32 ~~~i~l-~G~~GsGKSTla~~L~~~l----~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILL-GGQSGAGKTTIHRIKQKEF----QGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEE-ESCGGGTTHHHHHHHHHHT----TTCCEEECGGGG
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHhc----CCCcEEEecHHH
Confidence 455554 5889999999999877543 445677888753
No 334
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.70 E-value=0.13 Score=44.24 Aligned_cols=35 Identities=23% Similarity=0.496 Sum_probs=25.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
++|.| .+--|+||||++..||..+ ..-+||+|..+
T Consensus 41 ~lIvI-~GPTgsGKTtLa~~LA~~l------~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVL-MGATGTGKSRLSIDLAAHF------PLEVINSDKMQ 75 (339)
T ss_dssp EEEEE-ECSTTSSHHHHHHHHHTTS------CEEEEECCSST
T ss_pred ceEEE-ECCCCCCHHHHHHHHHHHC------CCcEEcccccc
Confidence 55555 5778999999999776533 34678999654
No 335
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.70 E-value=0.22 Score=44.54 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=30.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhC--CCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~--g~~VlliD~D 70 (295)
..+.+ .+..|+||||++..++..+.. . +.+++.+++.
T Consensus 131 ~~lll-~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFI-YGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSE 169 (440)
T ss_dssp CCEEE-ECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHH
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHH
Confidence 44555 478899999999999999987 5 8889988765
No 336
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.55 E-value=0.28 Score=38.45 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=23.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+..|.+ .+-.|+||||++..|+..+ |.. +||.|
T Consensus 20 ~~~I~l-~G~~GsGKST~a~~La~~l----~~~--~i~~d 52 (201)
T 2cdn_A 20 HMRVLL-LGPPGAGKGTQAVKLAEKL----GIP--QISTG 52 (201)
T ss_dssp CCEEEE-ECCTTSSHHHHHHHHHHHH----TCC--EEEHH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHh----CCc--EEehh
Confidence 455655 4888999999999887765 434 46664
No 337
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.43 E-value=0.24 Score=43.44 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=27.5
Q ss_pred eCCCCCcHHHHHHHHHHHHHHhC------CCeEEEEEeCC
Q 022525 38 SGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADV 71 (295)
Q Consensus 38 s~kGGvGKTt~a~~LA~~la~~~------g~~VlliD~D~ 71 (295)
.+.+|+||||++..++..+.. . +..++.+++..
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSE-AAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHH-HHHHTTCCEEEEEEEGGG
T ss_pred cCcCCCCHHHHHHHHHHHHHH-HHhccCCceeEEEEECCC
Confidence 699999999999999988876 4 66788888753
No 338
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.40 E-value=0.29 Score=41.19 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=27.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCC----eEEEEE
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQL----KVGLLD 68 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~----~VlliD 68 (295)
..|.++ +..|+|||+++..+|..+.. .+. .++.++
T Consensus 68 ~~vll~-G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~ 106 (309)
T 3syl_A 68 LHMSFT-GNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVT 106 (309)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEEC
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEc
Confidence 445554 78999999999999999988 654 566554
No 339
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.39 E-value=0.22 Score=38.89 Aligned_cols=35 Identities=37% Similarity=0.414 Sum_probs=24.6
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
..+.+|+++ +..|+||||++..| ++ .|.. ++|.|.
T Consensus 6 ~~~~~I~i~-G~~GsGKST~~~~L----a~-~g~~--~id~d~ 40 (203)
T 1uf9_A 6 KHPIIIGIT-GNIGSGKSTVAALL----RS-WGYP--VLDLDA 40 (203)
T ss_dssp CCCEEEEEE-ECTTSCHHHHHHHH----HH-TTCC--EEEHHH
T ss_pred cCceEEEEE-CCCCCCHHHHHHHH----HH-CCCE--EEcccH
Confidence 335777775 67899999998755 45 4544 578773
No 340
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.37 E-value=0.18 Score=39.93 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=26.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHH-----HhCC-CeEEEEEeC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALA-----SKCQ-LKVGLLDAD 70 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la-----~~~g-~~VlliD~D 70 (295)
|.++.+..|+|||+.|..++..++ + .| ++|.+..+|
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~-~g~r~v~~~~~~ 48 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDE-NGIRRKVFTNIK 48 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCT-TSCCCCEEECCT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccc-cCceEEEEecCC
Confidence 444568889999999998877765 5 67 666556544
No 341
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.31 E-value=0.23 Score=39.12 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=24.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+|+++ +.-|+||||++..|+ . .|..+ +|.|.
T Consensus 2 ~~~i~l~-G~~GsGKST~~~~La----~-lg~~~--id~d~ 34 (206)
T 1jjv_A 2 TYIVGLT-GGIGSGKTTIANLFT----D-LGVPL--VDADV 34 (206)
T ss_dssp CEEEEEE-CSTTSCHHHHHHHHH----T-TTCCE--EEHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHH----H-CCCcc--cchHH
Confidence 4677776 778999999988664 4 56554 68774
No 342
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.27 E-value=0.26 Score=39.32 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=23.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+..|.+. +..|+||||++..||..+ |. ..||.|
T Consensus 4 ~~~I~l~-G~~GsGKsT~a~~La~~l----~~--~~i~~d 36 (220)
T 1aky_A 4 SIRMVLI-GPPGAGKGTQAPNLQERF----HA--AHLATG 36 (220)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH----CC--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc----Cc--eEEehh
Confidence 4556664 777999999999887755 33 346654
No 343
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.23 E-value=0.37 Score=41.77 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=30.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEeCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVY 72 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D~~ 72 (295)
.+.| .+..|+||||++..++..+.. . +..++.+++...
T Consensus 46 ~~li-~G~~G~GKTtl~~~l~~~~~~-~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 46 RATL-LGRPGTGKTVTLRKLWELYKD-KTTARFVYINGFIY 84 (389)
T ss_dssp EEEE-ECCTTSSHHHHHHHHHHHHTT-SCCCEEEEEETTTC
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHHhh-hcCeeEEEEeCccC
Confidence 5555 588999999999999988877 6 688888886543
No 344
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.23 E-value=0.33 Score=45.00 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=28.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH---HHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL---ASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l---a~~~g~~VlliD~D~~ 72 (295)
.++|+| .+-||+||||++..++... +......|.-++++..
T Consensus 147 ~~~v~I-~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 147 PGWVTI-HGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CceEEE-EcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 466666 5889999999999987643 2213345777777643
No 345
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.11 E-value=0.15 Score=43.57 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=27.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
.++ +..+..|+||||++.++|.. .|.+|++|+++
T Consensus 124 svi-LI~GpPGsGKTtLAlqlA~~----~G~~VlyIs~~ 157 (331)
T 2vhj_A 124 GMV-IVTGKGNSGKTPLVHALGEA----LGGKDKYATVR 157 (331)
T ss_dssp EEE-EEECSCSSSHHHHHHHHHHH----HHTTSCCEEEE
T ss_pred cEE-EEEcCCCCCHHHHHHHHHHh----CCCCEEEEEec
Confidence 444 56799999999999999876 36788999883
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.01 E-value=0.15 Score=41.06 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=22.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
++.|.|. +..|+||||++..||.. .|.. .||.|
T Consensus 7 ~~~I~l~-G~~GsGKsT~a~~La~~----l~~~--~i~~d 39 (227)
T 1zd8_A 7 LLRAVIM-GAPGSGKGTVSSRITTH----FELK--HLSSG 39 (227)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHH----SSSE--EEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHH----cCCe--EEech
Confidence 3556664 78999999999877654 4544 45654
No 347
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.99 E-value=2.1 Score=36.99 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=27.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
.+|+| .+.-|+||||+...++..+....|.+++.+.
T Consensus 124 g~i~I-~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 124 GLVLV-TGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp EEEEE-ECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEE-ECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 45555 5889999999999999888872366666553
No 348
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.96 E-value=0.28 Score=41.68 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=25.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+++| +.++..|+||||++..||..+ ..-+|.+|..
T Consensus 10 ~~~i-~i~GptgsGKt~la~~La~~~------~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAI-FLMGPTASGKTALAIELRKIL------PVELISVDSA 44 (316)
T ss_dssp CEEE-EEECCTTSCHHHHHHHHHHHS------CEEEEECCTT
T ss_pred CcEE-EEECCCccCHHHHHHHHHHhC------CCcEEecccc
Confidence 3455 456888999999999887543 2457888854
No 349
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.96 E-value=0.13 Score=39.55 Aligned_cols=30 Identities=30% Similarity=0.264 Sum_probs=17.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG 65 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vl 65 (295)
+++|.+ .+-.|+||||++..|+.. .|..++
T Consensus 5 ~~~I~l-~G~~GsGKST~a~~La~~----l~~~~i 34 (183)
T 2vli_A 5 SPIIWI-NGPFGVGKTHTAHTLHER----LPGSFV 34 (183)
T ss_dssp CCEEEE-ECCC----CHHHHHHHHH----STTCEE
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHh----cCCCEE
Confidence 456655 488999999999877543 455554
No 350
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.93 E-value=0.28 Score=38.51 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=23.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++|+|+ +..|+||||++..||..+ |. -++|.|.
T Consensus 3 ~~i~i~-G~~GsGKst~~~~la~~l----g~--~~~d~d~ 35 (208)
T 3ake_A 3 GIVTID-GPSASGKSSVARRVAAAL----GV--PYLSSGL 35 (208)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHH----TC--CEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc----CC--ceeccch
Confidence 467765 778999999999887655 32 4567773
No 351
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=89.86 E-value=0.34 Score=40.87 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=40.8
Q ss_pred CCccEEEEcCCCCCCc-------------cchhhhhhccCceEEEeeCCC-cc-hHHHHHHHHHHHhcCCCCeeeEEecc
Q 022525 138 GNLDILVIDMPPGTGD-------------AQLTTTQTLQLSGALIVSTPQ-DV-ALIDARKGITMFSKVQVPILGLVENM 202 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~-------------~~~~~~~l~~ad~viiv~~~~-~~-s~~~~~~~~~~l~~~~~~~~~~ViN~ 202 (295)
..++++|+|||+-... .......+..+|.+++++.+. .. .-......++.+...+.+.+ +|+|+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i-~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTI-GVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEE-EEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEE-EEEcC
Confidence 3478999999964320 012233455789887777652 21 11223456666666666664 99999
Q ss_pred ccCC
Q 022525 203 SCFI 206 (295)
Q Consensus 203 ~~~~ 206 (295)
.|..
T Consensus 208 ~Dl~ 211 (315)
T 1jwy_B 208 LDLM 211 (315)
T ss_dssp TTSS
T ss_pred cccC
Confidence 9853
No 352
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.83 E-value=0.19 Score=38.93 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=23.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
++.|.++ +.-|+||||++..|+..+ .|. .+||+|
T Consensus 10 ~~~I~l~-G~~GsGKSTv~~~La~~l---~g~--~~id~d 43 (184)
T 1y63_A 10 GINILIT-GTPGTGKTSMAEMIAAEL---DGF--QHLEVG 43 (184)
T ss_dssp SCEEEEE-CSTTSSHHHHHHHHHHHS---TTE--EEEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc---CCC--EEeeHH
Confidence 4566664 789999999998666541 243 457877
No 353
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.80 E-value=0.36 Score=38.48 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=29.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~-----~g~~VlliD~D~ 71 (295)
+.+++++ +..|+||||++..++..+... .+.+++.++...
T Consensus 25 G~~~~l~-G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 25 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 5777776 788999999999998865530 155688887654
No 354
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=89.74 E-value=0.74 Score=36.43 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=53.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcC--CCCeeeEEeccccCCCCCCCCCc
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKV--QVPILGLVENMSCFICPHCSEPS 214 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~--~~~~~~~ViN~~~~~~~~~~~~~ 214 (295)
..+.+.|+|+|+...........+..+|.++++...+.. ++..+...+..+.+. +.++ .+|.|+.+......
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~---- 136 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI-VLCGNKVDIKDRKV---- 136 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCE-EEEEECTTSSSCSS----
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECCccccccc----
Confidence 457799999996433223334445578999888876653 455555555555442 4555 49999999532211
Q ss_pred cccCCchhhHHHHHhCCcEE
Q 022525 215 FIFGKGGTHRTAAEMGLKVI 234 (295)
Q Consensus 215 ~~~~~~~~~~~~~~~g~~~~ 234 (295)
.....++.+..+.+++
T Consensus 137 ----~~~~~~~~~~~~~~~~ 152 (221)
T 3gj0_A 137 ----KAKSIVFHRKKNLQYY 152 (221)
T ss_dssp ----CGGGCCHHHHHTCEEE
T ss_pred ----cHHHHHHHHHcCCEEE
Confidence 1234556666676654
No 355
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.72 E-value=0.22 Score=40.98 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=28.4
Q ss_pred eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 38 s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.+..|+|||+++..++..+.. .+.+++.|+|...
T Consensus 35 ~G~~GtGKt~la~~i~~~~~~-~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 35 IGERGTGKELIASRLHYLSSR-WQGPFISLNCAAL 68 (265)
T ss_dssp ECCTTSCHHHHHHHHHHTSTT-TTSCEEEEEGGGS
T ss_pred ECCCCCcHHHHHHHHHHhcCc-cCCCeEEEecCCC
Confidence 488999999999999888777 6788888887643
No 356
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.65 E-value=0.29 Score=38.82 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=19.4
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHH
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVA 55 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~ 55 (295)
.+++|++ .+..|+||||++..|+..
T Consensus 7 ~g~~i~l-~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVL-SGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEE-ECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEE-ECcCCCCHHHHHHHHHhh
Confidence 3577777 488999999999877644
No 357
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.61 E-value=0.21 Score=37.81 Aligned_cols=31 Identities=32% Similarity=0.327 Sum_probs=22.0
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
|++ .+-.|+||||++..|+..+ |.. ++|.|.
T Consensus 3 I~l-~G~~GsGKsT~a~~L~~~l----~~~--~i~~d~ 33 (168)
T 2pt5_A 3 IYL-IGFMCSGKSTVGSLLSRSL----NIP--FYDVDE 33 (168)
T ss_dssp EEE-ESCTTSCHHHHHHHHHHHH----TCC--EEEHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh----CCC--EEECcH
Confidence 444 4788999999999887655 434 467663
No 358
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.56 E-value=0.58 Score=37.87 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=32.1
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
.++++..+ -+.-|.||||-+..++..+.. +|++|+++-.
T Consensus 17 ~~g~l~v~-~G~MgsGKTT~lL~~~~r~~~-~g~kvli~kp 55 (234)
T 2orv_A 17 TRGQIQVI-LGPMFSGKSTELMRRVRRFQI-AQYKCLVIKY 55 (234)
T ss_dssp -CCEEEEE-ECCTTSCHHHHHHHHHHHHHT-TTCCEEEEEE
T ss_pred CceEEEEE-ECCCCCcHHHHHHHHHHHHHH-CCCeEEEEee
Confidence 34665555 577889999999999999999 9999999963
No 359
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=89.55 E-value=0.6 Score=41.67 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=31.1
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
+...++|.|++. .||||++.-|+..|.. .|++|.++
T Consensus 49 ~~~~~vI~VtGT---NGKgSt~~~l~~iL~~-~G~~vg~~ 84 (437)
T 3nrs_A 49 KPAPKIFTVAGT---NGKGTTCCTLEAILLA-AGLRVGVY 84 (437)
T ss_dssp CSSSEEEEEECS---SSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cccCCEEEEECC---cChHHHHHHHHHHHHH-CCCcEEEE
Confidence 334799999844 7899999999999999 99999886
No 360
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.54 E-value=0.5 Score=38.07 Aligned_cols=41 Identities=24% Similarity=0.207 Sum_probs=31.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
++.|+|. +--|+||||++..|+..|....|.+|.++-..|.
T Consensus 21 ~~~i~~~-G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 21 SMFITFE-GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 5777775 7789999999999999997524888877445554
No 361
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.53 E-value=0.26 Score=37.99 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=20.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
+++|+++ +..|+||||++..|+..+
T Consensus 5 g~~i~i~-GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLL-GAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 5677775 788999999999887654
No 362
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.52 E-value=0.3 Score=41.04 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=25.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEe
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 69 (295)
+.+.+ .+..|+|||+++..+|..+ |.+++.+++
T Consensus 37 ~~lLl-~GppGtGKT~la~aiA~~l----~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGI-WGGKGQGKSFQCELVFRKM----GINPIMMSA 69 (293)
T ss_dssp SEEEE-EECTTSCHHHHHHHHHHHH----TCCCEEEEH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEEeH
Confidence 45555 4888999999999888766 667887775
No 363
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.51 E-value=0.32 Score=38.78 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=19.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
.+|+++ +..|+||||++..|+..+
T Consensus 6 ~~i~i~-G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITID-GPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 577776 788999999999776654
No 364
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.49 E-value=0.27 Score=39.75 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=26.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC----CCeEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC----QLKVGLL 67 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~----g~~Vlli 67 (295)
++.|+| .+-.|+||||.+..|+..|.. . |.+|.+.
T Consensus 25 g~~I~~-eG~~GsGKsT~~~~l~~~l~~-~~~~~g~~v~~~ 63 (227)
T 3v9p_A 25 GKFITF-EGIDGAGKTTHLQWFCDRLQE-RLGPAGRHVVVT 63 (227)
T ss_dssp CCEEEE-ECCC---CHHHHHHHHHHHHH-HHGGGTCCEEEE
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHh-hccccceeeeee
Confidence 456666 588999999999999999998 7 9998654
No 365
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.47 E-value=0.68 Score=35.36 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=43.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhcC----CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~----~~~~~~~ViN~~~~ 205 (295)
+.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.+. +.+ +.+|.|+.|.
T Consensus 60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 131 (186)
T 1ksh_A 60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDL 131 (186)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccC
Confidence 35779999999643222233344557899998888654 4577766666655432 344 4599999984
No 366
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.43 E-value=0.32 Score=38.29 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=25.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+.+|+++ +..|+||||++..|+..+ ..+.+||.|..
T Consensus 21 ~~~i~i~-G~~GsGKSTl~~~L~~~~-----~~~~~i~~D~~ 56 (207)
T 2qt1_A 21 TFIIGIS-GVTNSGKTTLAKNLQKHL-----PNCSVISQDDF 56 (207)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHTTS-----TTEEEEEGGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc-----CCcEEEeCCcc
Confidence 5788886 566999999988654422 14678888853
No 367
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=89.33 E-value=0.56 Score=38.32 Aligned_cols=42 Identities=33% Similarity=0.499 Sum_probs=37.5
Q ss_pred CeEEEEeeCC-CCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGK-GGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~k-GGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+|-|.|+++- .|.||-.+|+.++..|.. +|.+|..+-+||--
T Consensus 23 mKyIfVTGGVvSglGKGi~aaSlG~LLk~-rG~~Vt~~KiDPYl 65 (294)
T 2c5m_A 23 MKYILVTGGVISGIGKGIIASSVGTILKS-CGLHVTSIKIDPYI 65 (294)
T ss_dssp CEEEEEEECSSTTSCHHHHHHHHHHHHHT-TTCCEECCEEECBC
T ss_pred eEEEEEcCccccccchHHHHHHHHHHHHH-CCCeeEEEecCCce
Confidence 5777777766 899999999999999999 99999999999854
No 368
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.33 E-value=0.46 Score=41.62 Aligned_cols=32 Identities=31% Similarity=0.258 Sum_probs=28.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 39 ~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+..|+||||+...+...+.. .|.+|+++|.+.
T Consensus 42 G~~G~GKs~~~~~~~~~~~~-~~~~~~~~D~~~ 73 (392)
T 4ag6_A 42 AKPGAGKSFTAKMLLLREYM-QGSRVIIIDPER 73 (392)
T ss_dssp CCTTSSHHHHHHHHHHHHHT-TTCCEEEEESSC
T ss_pred cCCCCCHHHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 78889999999999999988 899999998654
No 369
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.27 E-value=0.3 Score=37.84 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=23.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+.+|+++ +..|+||||++..|+.. .+...+.+|.|
T Consensus 9 g~~i~l~-G~~GsGKSTl~~~La~~----~~~g~i~i~~d 43 (191)
T 1zp6_A 9 GNILLLS-GHPGSGKSTIAEALANL----PGVPKVHFHSD 43 (191)
T ss_dssp TEEEEEE-ECTTSCHHHHHHHHHTC----SSSCEEEECTT
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhc----cCCCeEEEccc
Confidence 5677775 78899999998877653 23344556544
No 370
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.18 E-value=1.9 Score=33.44 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=41.3
Q ss_pred CCccEEEEcCCCCCCccc-hhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQ-LTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~-~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+++...... +....+..+|.++++...+. .++..+...+..+.. .+.++ .+|.|+.|.
T Consensus 70 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 142 (195)
T 3cbq_A 70 EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-ILVGNKSDL 142 (195)
T ss_dssp EEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCE-EEEEECTTC
T ss_pred EEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEeechhc
Confidence 346788999985433211 22233446898888877654 456666665555543 24555 499999985
No 371
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.16 E-value=0.54 Score=35.78 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=42.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHH-HHHHHHhcC--CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~-~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+++|...+. .++.... ..+..+... +.++ .+|+|+.|.
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 121 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDL 121 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCE-EEEEECHHH
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCE-EEEeEcccc
Confidence 45678899999643322233344557899988888655 4555554 344455432 4555 499999984
No 372
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.99 E-value=0.29 Score=37.88 Aligned_cols=23 Identities=48% Similarity=0.678 Sum_probs=18.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAV 54 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~ 54 (295)
+.+|+++ +..|+||||++..|+.
T Consensus 2 g~ii~l~-G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIIT-GPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCcHHHHHHHHhc
Confidence 4566664 7799999999998874
No 373
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.98 E-value=0.25 Score=40.59 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=25.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+++|+++ +..|+||||++..||..+.- -++|.|.
T Consensus 48 g~~i~l~-G~~GsGKSTl~~~La~~lg~------~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLV-GMMGSGKTTVGKIMARSLGY------TFFDCDT 81 (250)
T ss_dssp TCCEEEE-CSTTSCHHHHHHHHHHHHTC------EEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhcCC------cEEeCcH
Confidence 4667775 78899999999988876644 4567663
No 374
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=88.96 E-value=0.68 Score=41.06 Aligned_cols=35 Identities=34% Similarity=0.350 Sum_probs=30.4
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
...++|+|++. .||||++.-++..|.. .|++|.++
T Consensus 47 ~~~~vI~VTGT---nGKtTT~~~l~~iL~~-~G~~~g~~ 81 (422)
T 1w78_A 47 PAPFVFTVAGT---NGKGTTCRTLESILMA-AGYKVGVY 81 (422)
T ss_dssp CSSEEEEEECS---SCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cCCcEEEEeCC---cChHHHHHHHHHHHHH-CCCCEEEE
Confidence 34689999855 6899999999999999 99999876
No 375
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.92 E-value=0.8 Score=41.24 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.4
Q ss_pred eeCCCCCcHHHHHHHHHHHHHH
Q 022525 37 ASGKGGVGKSTTAVNLAVALAS 58 (295)
Q Consensus 37 ~s~kGGvGKTt~a~~LA~~la~ 58 (295)
..+..|||||+++..+|..+..
T Consensus 206 L~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 206 LIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EESCTTTTTHHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 3488999999999999999876
No 376
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=88.85 E-value=0.43 Score=38.08 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=25.7
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+..|+++ +--|+||||++. .|++ .|..| ||+|.
T Consensus 9 ~~~iglT-GgigsGKStv~~----~l~~-~g~~v--idaD~ 41 (210)
T 4i1u_A 9 MYAIGLT-GGIGSGKTTVAD----LFAA-RGASL--VDTDL 41 (210)
T ss_dssp CCEEEEE-CCTTSCHHHHHH----HHHH-TTCEE--EEHHH
T ss_pred eeEEEEE-CCCCCCHHHHHH----HHHH-CCCcE--EECcH
Confidence 5678887 667899999988 4567 78776 68886
No 377
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.83 E-value=0.58 Score=36.73 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=42.7
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHH-HHHHHHhcC--CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSKV--QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~-~~~~~l~~~--~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+++|..... .++..+. ..+..+... +.+++ +|.|+.|.
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 125 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV-LVGTKLDL 125 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE-EEEECHHH
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEeCHHh
Confidence 45789999999654322333344567899999987654 4555554 455555442 55554 99999984
No 378
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.79 E-value=0.95 Score=34.87 Aligned_cols=90 Identities=10% Similarity=-0.060 Sum_probs=51.7
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHH-HHHHHHHhcC--CCCeeeEEeccccCCCCCCCCC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDA-RKGITMFSKV--QVPILGLVENMSCFICPHCSEP 213 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~-~~~~~~l~~~--~~~~~~~ViN~~~~~~~~~~~~ 213 (295)
..+.+.|+|+|+...........+..+|.++++...+. .++..+ ...+..+... +.+ +.+|.|+.|.....
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~---- 143 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDG---- 143 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTT----
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCC----
Confidence 45678999999643322333444557899988887654 345554 3344444432 344 45999999954211
Q ss_pred ccccCCchhhHHHHHhCCc
Q 022525 214 SFIFGKGGTHRTAAEMGLK 232 (295)
Q Consensus 214 ~~~~~~~~~~~~~~~~g~~ 232 (295)
..........++.+.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 144 SDDVTKQEGDDLCQKLGCV 162 (194)
T ss_dssp TTCCCHHHHHHHHHHHTCS
T ss_pred CCcccHHHHHHHHHhcCCC
Confidence 1112234466666766654
No 379
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.76 E-value=0.31 Score=37.40 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=18.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
++.|.+ .+-.|+||||++..|+..+
T Consensus 11 ~~~i~i-~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILL-TGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEE-ECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEE-EeCCCCCHHHHHHHHHHHh
Confidence 345555 5888999999999877654
No 380
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.71 E-value=0.67 Score=35.14 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=40.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHH-HHHHHHhc--CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSK--VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~-~~~~~l~~--~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++..... .++..+. ..+..+.. .+.++ .+|.|+.|.
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 124 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-VLVGTKLDL 124 (182)
T ss_dssp ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE-EEEEECHHH
T ss_pred EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEechhh
Confidence 35667899999754332333444557899999888754 4555554 35555544 24555 499999984
No 381
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.71 E-value=1.5 Score=34.08 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=42.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
+++.+.++|+|+...........+..+|.++++.+... .++..+...+..+.+ .+.|+ .+|.|+.|.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 138 (198)
T 1f6b_A 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI-LILGNKIDR 138 (198)
T ss_dssp TTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCE-EEEEECTTS
T ss_pred CCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE-EEEEECCCc
Confidence 34778999999643322333344557899999888654 467777666665543 34555 599999984
No 382
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.68 E-value=1.4 Score=33.62 Aligned_cols=86 Identities=12% Similarity=0.032 Sum_probs=49.7
Q ss_pred CCccEEEEcCCCCCCcc------chhhhhh--ccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccCCCCC
Q 022525 138 GNLDILVIDMPPGTGDA------QLTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCFICPH 209 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~------~~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~~~~~ 209 (295)
+.+.+.|+|+|+..... .+....+ ..+|.++++..... .......+..+...+.+++ +|.|+.+.....
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~ 128 (188)
T 2wjg_A 52 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLL-LALNKMDLAKSL 128 (188)
T ss_dssp TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEE-EEEECHHHHHHT
T ss_pred CCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEE-EEEEhhhccccc
Confidence 34678999999644321 1111111 24788888877653 5555566666666666665 899998843111
Q ss_pred CCCCccccCCchhhHHHHHhCCcE
Q 022525 210 CSEPSFIFGKGGTHRTAAEMGLKV 233 (295)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~g~~~ 233 (295)
. . ....+++.+.++.++
T Consensus 129 ~------~-~~~~~~~~~~~~~~~ 145 (188)
T 2wjg_A 129 G------I-EIDVDKLEKILGVKV 145 (188)
T ss_dssp T------C-CCCHHHHHHHHTSCE
T ss_pred c------c-hHHHHHHHHHhCCCe
Confidence 0 0 123566666666543
No 383
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.66 E-value=0.48 Score=38.00 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=20.5
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
.+++|.+. +..|+||+|.|..|+..+
T Consensus 28 k~kiI~ll-GpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVL-GGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence 36788777 678999999999887644
No 384
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.58 E-value=1.8 Score=32.35 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=38.8
Q ss_pred CccEEEEcCCCCCCcc------chhhhhh--ccCceEEEeeCCCcchHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDA------QLTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~------~~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
.+.+.++|||+..... .+....+ ..+|.++++.+.... ......+..+.+.+.+++ +|.|+.+.
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~i-lv~nK~Dl 120 (165)
T 2wji_A 49 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLL-LALNKMDL 120 (165)
T ss_dssp TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEE-EEEECHHH
T ss_pred CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEE-EEEEchHh
Confidence 4568999998644321 0111111 268999998887653 333444555555566654 99999884
No 385
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.56 E-value=0.58 Score=42.18 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=30.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+.+.++.+-.|+||||++..|+..+.. .+.++..++.|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d 76 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVG 76 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecc
Confidence 444455588999999999999999988 78888777644
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.54 E-value=0.44 Score=38.43 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=23.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+..|.|. +..|+||||++..||..+. . ..||.|
T Consensus 16 ~~~I~l~-G~~GsGKsT~a~~La~~l~----~--~~i~~d 48 (233)
T 1ak2_A 16 GVRAVLL-GPPGAGKGTQAPKLAKNFC----V--CHLATG 48 (233)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHHT----C--EEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhC----C--ceecHH
Confidence 4556664 7779999999998887653 2 456654
No 387
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=88.48 E-value=0.35 Score=44.64 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=43.0
Q ss_pred ccEEEEcCCCCCCc-----------cchhhhhhccCceEEEeeCCCcc-hHHHHHHHHHHHhcCCCCeeeEEeccccC
Q 022525 140 LDILVIDMPPGTGD-----------AQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPILGLVENMSCF 205 (295)
Q Consensus 140 yD~iiiD~~~~~~~-----------~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~ViN~~~~ 205 (295)
..++|+|||+-... .......+..+|.+++|+.+... ........++.+...+.++ .+|+|+.|.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pv-ilVlNK~Dl 230 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKI-RVVLNKADM 230 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGE-EEEEECGGG
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCE-EEEEECCCc
Confidence 35899999964321 01222345578999999988763 3455566677776555554 599999984
No 388
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.43 E-value=0.42 Score=38.88 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=20.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la 57 (295)
+.+|++. +..|+||||++..|+..+.
T Consensus 27 ~~~i~l~-G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVIL-GPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 4677775 8899999999998876653
No 389
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=88.37 E-value=0.64 Score=40.24 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=41.9
Q ss_pred CccEEEEcCCCCCCc-------------cchhhhhhccCceEEEeeCCCc--chHHHHHHHHHHHhcCCCCeeeEEeccc
Q 022525 139 NLDILVIDMPPGTGD-------------AQLTTTQTLQLSGALIVSTPQD--VALIDARKGITMFSKVQVPILGLVENMS 203 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~-------------~~~~~~~l~~ad~viiv~~~~~--~s~~~~~~~~~~l~~~~~~~~~~ViN~~ 203 (295)
..++.|+|+|+-... .......+..+|.+|+++.+.. .........+..+...+.+.+ +|+|+.
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i-~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTF-GVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEE-EEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEE-EEEeCC
Confidence 568999999953331 1233444567887777765432 233444556666655566665 899999
Q ss_pred cCC
Q 022525 204 CFI 206 (295)
Q Consensus 204 ~~~ 206 (295)
|..
T Consensus 214 Dl~ 216 (360)
T 3t34_A 214 DLM 216 (360)
T ss_dssp GGC
T ss_pred ccC
Confidence 853
No 390
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=88.36 E-value=0.42 Score=39.01 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=32.1
Q ss_pred cCCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 27 ~~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
...|+|++.|+++.||.|+ ++|..|++ +|.+|+++|-+...
T Consensus 18 ~~~m~k~vlITGas~gIG~-----~la~~l~~-~G~~V~~~~r~~~~ 58 (251)
T 3orf_A 18 GSHMSKNILVLGGSGALGA-----EVVKFFKS-KSWNTISIDFRENP 58 (251)
T ss_dssp ----CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSCCT
T ss_pred ccccCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCccc
Confidence 4456799999999999985 77888999 99999999877643
No 391
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.33 E-value=0.34 Score=44.66 Aligned_cols=40 Identities=38% Similarity=0.369 Sum_probs=31.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+|+++ +..|+||||++..|+..+....|.++.++|.|.
T Consensus 369 G~iI~Li-G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 369 GFTVFFT-GLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp CEEEEEE-ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ceEEEEE-CCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 5777776 668899999999999999862345777787663
No 392
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.32 E-value=0.51 Score=36.26 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=23.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+..|++. +-.|+||||++..|+..+ |. ..+|.|
T Consensus 4 g~~I~l~-G~~GsGKST~~~~La~~l----~~--~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFL-GPPGAGKGTQASRLAQEL----GF--KKLSTG 36 (186)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHHHHH----TC--EEECHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh----CC--eEecHH
Confidence 4556554 789999999999887654 43 346665
No 393
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=88.28 E-value=0.52 Score=44.02 Aligned_cols=35 Identities=37% Similarity=0.454 Sum_probs=27.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHh---CCCeEEEE
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLL 67 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~---~g~~Vlli 67 (295)
-+.+..+..|+||||++..+...|.+. .|.+|+++
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 355556889999999999999988851 45677776
No 394
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=88.16 E-value=1.6 Score=37.16 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=41.6
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCC-cchHHHHHHHHHHHhc-C---CCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSK-V---QVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~-~---~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|||+...........+..+|.+|+|...+ ..++..+...+..+.. . +.++ .+|+|+.|.
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilV~NK~Dl 278 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL-LVFANKQDL 278 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEE-EEEEECTTS
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeE-EEEEECccC
Confidence 4578999999975443333444456789998888775 3466666655554433 2 4444 599999984
No 395
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.11 E-value=0.4 Score=42.32 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=30.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~-----~g~~VlliD~D~ 71 (295)
+.++.|+ +..|+||||++..++...... .+.+|++||...
T Consensus 178 Gei~~I~-G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELF-GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEE-cCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4566665 889999999999988766531 257899998774
No 396
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.07 E-value=0.34 Score=38.69 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=19.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la 57 (295)
++.|.|. +-.|+||||++..||..+.
T Consensus 5 ~~~I~l~-G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMIS-GAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEE-ESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 4556664 6789999999998877553
No 397
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.97 E-value=1.2 Score=33.87 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=41.1
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHH-HHHHHHHhc--CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDA-RKGITMFSK--VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~-~~~~~~l~~--~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++...+. .++..+ ...+..+.. .+.+ +.+|.|+.|.
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 123 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDL 123 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchh
Confidence 45778999999643322233334557898888887654 455555 334444443 2444 4599999985
No 398
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.93 E-value=0.44 Score=39.01 Aligned_cols=26 Identities=42% Similarity=0.586 Sum_probs=20.5
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
.+.+|+|. +..|+||||++..||..|
T Consensus 26 ~g~~I~I~-G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVD-GPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEE-CCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 35788886 778999999999777444
No 399
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.89 E-value=0.94 Score=37.35 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=29.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D 70 (295)
+.+++|+ +.-|+||||+...|+..+.. . ..++.+.+-+
T Consensus 25 g~~v~i~-Gp~GsGKSTll~~l~g~~~~-~~~G~I~~~g~~ 63 (261)
T 2eyu_A 25 MGLILVT-GPTGSGKSTTIASMIDYINQ-TKSYHIITIEDP 63 (261)
T ss_dssp SEEEEEE-CSTTCSHHHHHHHHHHHHHH-HCCCEEEEEESS
T ss_pred CCEEEEE-CCCCccHHHHHHHHHHhCCC-CCCCEEEEcCCc
Confidence 5777776 66799999999999998876 4 5677665533
No 400
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.77 E-value=0.3 Score=38.48 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=19.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
+++|+++ +..|+||||++..|+..+
T Consensus 12 ~~~i~l~-G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVC-GPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEE-CCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 4666664 778899999999887654
No 401
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.69 E-value=0.62 Score=42.64 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=32.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+.++++. +..|+||||++..++..++. .|.+++.+...
T Consensus 281 G~i~~i~-G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~e 318 (525)
T 1tf7_A 281 DSIILAT-GATGTGKTLLVSRFVENACA-NKERAILFAYE 318 (525)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHHHT-TTCCEEEEESS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEe
Confidence 4566665 88999999999999999998 89999888754
No 402
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.37 E-value=0.48 Score=37.04 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=19.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
+.+|+++ +..|+||||++..|+..+
T Consensus 7 g~ii~l~-Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIIS-APSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 5778876 778999999999777553
No 403
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=87.31 E-value=0.74 Score=41.73 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=29.7
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
..++|+|++. .||||++.-|+..|.. .|++|.++
T Consensus 63 ~~~vI~VtGT---NGKtST~~~l~~iL~~-~G~~vG~~ 96 (487)
T 2vos_A 63 SYPSIHIAGT---NGKTSVARMVDALVTA-LHRRTGRT 96 (487)
T ss_dssp SSCEEEEECS---SSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cCeEEEEeCC---CCcHHHHHHHHHHHHH-cCCCeEEE
Confidence 4689999855 5899999999999999 99999766
No 404
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.16 E-value=0.82 Score=36.84 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=26.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
++.|+|. +-.|+||||++..|+..+.. |.+|+..
T Consensus 26 g~~i~i~-G~~GsGKsT~~~~l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFE-GPEGSGKTTVINEVYHRLVK--DYDVIMT 59 (229)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHHHHTT--TSCEEEE
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHhc--CCCceee
Confidence 5777775 77789999999999988865 6677543
No 405
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=87.14 E-value=0.49 Score=37.00 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=19.3
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
+.+|+++ +..|+||||++..|+..+
T Consensus 6 g~~i~l~-G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLS-GPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEE-CSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhh
Confidence 5677776 778999999998776544
No 406
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.13 E-value=0.52 Score=36.69 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=18.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHH
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALA 57 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la 57 (295)
.|++ .+-.|+||||++..|+..|.
T Consensus 2 ~I~i-~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAI-FGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEE-ECCTTSCHHHHHHHHHHHHC
T ss_pred EEEE-ECCCccCHHHHHHHHHHhcC
Confidence 3444 47789999999998887653
No 407
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=87.07 E-value=0.73 Score=45.83 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=29.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHH--HHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVA--LASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~--la~~~g~~VlliD~D~~ 72 (295)
.++|+|+ +-||+||||+|..++.. .....+..++.++.+..
T Consensus 150 ~RVV~Iv-GmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~ 192 (1221)
T 1vt4_I 150 AKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192 (1221)
T ss_dssp SCEEEEC-CSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS
T ss_pred CeEEEEE-cCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC
Confidence 4778775 77999999999998853 33324556888887643
No 408
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=87.03 E-value=0.77 Score=40.78 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=30.1
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
..++|+|++. .||||++.-|+..|.. .|++|.++
T Consensus 38 ~~~vI~VtGT---nGKtTT~~~l~~iL~~-~G~~vg~~ 71 (428)
T 1jbw_A 38 QGRYIHVTGT---NGKGSAANAIAHVLEA-SGLTVGLY 71 (428)
T ss_dssp SSCEEEEECS---SCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cCcEEEEECC---CChHHHHHHHHHHHHH-CCCCEEEE
Confidence 3689999855 6899999999999999 99999877
No 409
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.99 E-value=1.2 Score=34.97 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=31.7
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
..++++..++ +.-|.||||-.......+.. +|++|+++...
T Consensus 17 ~~~g~l~fiy-G~MgsGKTt~Ll~~i~n~~~-~~~kvl~~kp~ 57 (195)
T 1w4r_A 17 KTRGQIQVIL-GPMFSGKSTELMRRVRRFQI-AQYKCLVIKYA 57 (195)
T ss_dssp --CCEEEEEE-ECTTSCHHHHHHHHHHHHHH-TTCCEEEEEET
T ss_pred CCceEEEEEE-CCCCCcHHHHHHHHHHHHHH-cCCeEEEEccc
Confidence 3456766655 77789999988888888888 89999999644
No 410
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=86.97 E-value=1.3 Score=34.30 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=41.8
Q ss_pred CccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHH-HHHHHHhc--CCCCeeeEEeccccC
Q 022525 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSK--VQVPILGLVENMSCF 205 (295)
Q Consensus 139 ~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~-~~~~~l~~--~~~~~~~~ViN~~~~ 205 (295)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+. ..+..+.. .+.++ .+|.|+.|.
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 136 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPI-ILVGTQSDL 136 (201)
T ss_dssp EEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCE-EEEEECGGG
T ss_pred EEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEECHhh
Confidence 4678899999644322333344567899998888654 3555554 34444443 24555 499999985
No 411
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.79 E-value=0.55 Score=41.37 Aligned_cols=34 Identities=32% Similarity=0.595 Sum_probs=25.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
++|+| ++..|+||||++..||..+.. .+|.+|..
T Consensus 3 ~~i~i-~GptgsGKttla~~La~~~~~------~iis~Ds~ 36 (409)
T 3eph_A 3 KVIVI-AGTTGVGKSQLSIQLAQKFNG------EVINSDSM 36 (409)
T ss_dssp EEEEE-EECSSSSHHHHHHHHHHHHTE------EEEECCTT
T ss_pred cEEEE-ECcchhhHHHHHHHHHHHCCC------eEeecCcc
Confidence 45555 578899999999988876643 46888853
No 412
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=86.70 E-value=1 Score=39.21 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=29.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLD 68 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD 68 (295)
+.+|+|+ +.-|+||||+...|+..+.. . ..+|+.++
T Consensus 136 g~~i~iv-G~~GsGKTTll~~l~~~~~~-~~~g~I~~~e 172 (372)
T 2ewv_A 136 MGLILVT-GPTGSGKSTTIASMIDYINQ-TKSYHIITIE 172 (372)
T ss_dssp SEEEEEE-CSSSSSHHHHHHHHHHHHHH-HSCCEEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhcCc-CCCcEEEEec
Confidence 5677775 67799999999999999887 5 56777776
No 413
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.69 E-value=0.46 Score=37.82 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=19.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
+..|.|. +..|+||||++..||..+
T Consensus 5 ~~~I~l~-G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILI-GAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 3456665 677999999999887765
No 414
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.50 E-value=0.62 Score=37.76 Aligned_cols=34 Identities=41% Similarity=0.541 Sum_probs=23.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+|+|. +..|+||||++..||..|.- ..+|.|.
T Consensus 9 ~~~i~i~-G~~GsGKsTla~~la~~lg~------~~~d~g~ 42 (233)
T 3r20_A 9 SLVVAVD-GPAGTGKSSVSRGLARALGA------RYLDTGA 42 (233)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHHTC------EEEEHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhCC------CcccCCc
Confidence 3466664 77889999999988766543 4466654
No 415
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=86.44 E-value=0.56 Score=38.40 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=30.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.|++.|+++.+|.|+ .+|..|++ .|.+|+++|.|.
T Consensus 2 nK~vlVTGas~GIG~-----aia~~la~-~Ga~V~~~~~~~ 36 (247)
T 3ged_A 2 NRGVIVTGGGHGIGK-----QICLDFLE-AGDKVCFIDIDE 36 (247)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEecCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 488999999999997 56788999 999999998774
No 416
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.18 E-value=0.64 Score=36.89 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=20.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALAS 58 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~ 58 (295)
..+.| .+..|+||||++..++..+..
T Consensus 46 ~~~ll-~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLF-SGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEE-ECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHhcC
Confidence 34444 588999999999999887765
No 417
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=86.16 E-value=1.4 Score=40.00 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=37.8
Q ss_pred CeEEEEeeCC-CCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGK-GGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~k-GGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+|-|.|+++- .|.||-.+|+.|+..|.. +|.+|..+-+||--
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~-~g~~v~~~k~dpyl 45 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKR-RGYNVTAVKIDPYI 45 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHH-TTCCEEEEEEECSS
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHH-CCceEEEEecCcce
Confidence 5778887765 899999999999999999 99999999999854
No 418
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.12 E-value=0.49 Score=37.55 Aligned_cols=32 Identities=38% Similarity=0.566 Sum_probs=23.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+.+|+|. +.-|+||||++..|+ + .|.. ++|.|
T Consensus 4 ~~~I~i~-G~~GSGKST~~~~L~----~-lg~~--~id~D 35 (218)
T 1vht_A 4 RYIVALT-GGIGSGKSTVANAFA----D-LGIN--VIDAD 35 (218)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHH----H-TTCE--EEEHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHH----H-cCCE--EEEcc
Confidence 3566664 889999999888664 4 5654 46876
No 419
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.97 E-value=0.58 Score=37.88 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=20.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
++.|+|. +--|+||||++..|+..|
T Consensus 2 ~~~i~~~-G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIE-GNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHc
Confidence 4677775 668999999999887765
No 420
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=85.89 E-value=1 Score=43.21 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=31.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.+.| .+..|||||++|..+|..+.. .+.+.+.||+...
T Consensus 523 ~~Ll-~Gp~GtGKT~lA~ala~~l~~-~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 523 SFIF-LGPTGVGKTELARALAESIFG-DEESMIRIDMSEY 560 (758)
T ss_dssp EEEE-ESCTTSSHHHHHHHHHHHHHS-CTTCEEEEEGGGG
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHhcC-CCcceEEEechhc
Confidence 3444 478899999999999999987 7889999988543
No 421
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=85.71 E-value=0.87 Score=42.64 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=27.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
+.++.+..|+||||+.+.+...+.+..+.+|+++
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 4556688999999999999988875257788876
No 422
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.63 E-value=0.63 Score=39.64 Aligned_cols=34 Identities=26% Similarity=0.140 Sum_probs=25.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+..+..|+||||++..++..+. .+++.+++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~----~~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN----LPYIYLDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT----CCEEEEEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC----CCEEEEEchh
Confidence 444568899999999998876543 3578888764
No 423
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.57 E-value=1 Score=35.60 Aligned_cols=32 Identities=34% Similarity=0.452 Sum_probs=22.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
++.|.|+ +..|+||||+|..| ++ +|. -+|..|
T Consensus 34 g~~ilI~-GpsGsGKStLA~~L----a~-~g~--~iIsdD 65 (205)
T 2qmh_A 34 GLGVLIT-GDSGVGKSETALEL----VQ-RGH--RLIADD 65 (205)
T ss_dssp TEEEEEE-CCCTTTTHHHHHHH----HT-TTC--EEEESS
T ss_pred CEEEEEE-CCCCCCHHHHHHHH----HH-hCC--eEEecc
Confidence 5666665 78899999998854 56 666 334444
No 424
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.57 E-value=2.3 Score=32.37 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=43.0
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~~~ViN~~~~ 205 (295)
+.+.+.++|+|+...........+..+|.+++|.+... .++......+..+.+ .+.++ .+|.|+.|.
T Consensus 58 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 129 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV-LIFANKQDL 129 (181)
T ss_dssp TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCE-EEEEECcCc
Confidence 35778999999643322222334567899999887654 466666665554432 24454 599999984
No 425
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.49 E-value=0.91 Score=36.92 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=24.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+-|.+ .+..|+|||+++..+|..+ +.+++.+++.
T Consensus 40 ~~vll-~G~~GtGKT~la~~la~~~----~~~~~~~~~~ 73 (262)
T 2qz4_A 40 KGALL-LGPPGCGKTLLAKAVATEA----QVPFLAMAGA 73 (262)
T ss_dssp CEEEE-ESCTTSSHHHHHHHHHHHH----TCCEEEEETT
T ss_pred ceEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEechH
Confidence 44544 4788999999999887744 5577777664
No 426
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=85.45 E-value=0.81 Score=35.73 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=23.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQ 61 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g 61 (295)
.+++++ +.-|+||||+..-|+..+.. .|
T Consensus 2 ~~i~i~-G~nG~GKTTll~~l~g~~~~-~G 29 (189)
T 2i3b_A 2 RHVFLT-GPPGVGKTTLIHKASEVLKS-SG 29 (189)
T ss_dssp CCEEEE-SCCSSCHHHHHHHHHHHHHH-TT
T ss_pred CEEEEE-CCCCChHHHHHHHHHhhccc-CC
Confidence 356665 88899999999999999986 88
No 427
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=85.45 E-value=1.1 Score=38.32 Aligned_cols=31 Identities=45% Similarity=0.440 Sum_probs=27.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG 65 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vl 65 (295)
.++|+|+ |-.||||++.-+++.|.. .|+++.
T Consensus 108 ~~~IaVT---GTnGKTTTt~ll~~iL~~-~g~~~~ 138 (326)
T 3eag_A 108 HWVLGVA---GTHGKTTTASMLAWVLEY-AGLAPG 138 (326)
T ss_dssp SEEEEEE---SSSCHHHHHHHHHHHHHH-TTCCCE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHH-cCCCce
Confidence 4899997 558999999999999999 998874
No 428
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.32 E-value=0.64 Score=37.48 Aligned_cols=34 Identities=32% Similarity=0.363 Sum_probs=24.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.+|+++ +.-|+||||++..|+..| |. ..+|.|.
T Consensus 16 ~~~i~i~-G~~gsGKst~~~~l~~~l----g~--~~~d~d~ 49 (236)
T 1q3t_A 16 TIQIAID-GPASSGKSTVAKIIAKDF----GF--TYLDTGA 49 (236)
T ss_dssp CCEEEEE-CSSCSSHHHHHHHHHHHH----CC--EEEEHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc----CC--ceecCCC
Confidence 5677776 678999999998776544 43 4567764
No 429
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=85.17 E-value=0.73 Score=36.30 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=19.5
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHH
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVA 55 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~ 55 (295)
.+++|++ ++..|+||||+...|...
T Consensus 18 ~g~~ivl-~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVL-IGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEE-ECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEE-ECcCCCCHHHHHHHHHhh
Confidence 4567766 588899999999877654
No 430
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.05 E-value=0.83 Score=38.91 Aligned_cols=27 Identities=7% Similarity=0.051 Sum_probs=22.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~ 58 (295)
+..+ +.++..|+|||+++..++..|..
T Consensus 45 ~~~l-li~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLF-YITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CCEE-EEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCeE-EEECCCCCCHHHHHHHHHHHHHH
Confidence 4555 44699999999999999999976
No 431
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=85.04 E-value=1.2 Score=40.37 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=29.6
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
..++|+|+ |-.||||++.-|+..|.. .|++|.++
T Consensus 107 ~~~vI~VT---GTnGKTTT~~ml~~iL~~-~g~~~~~~ 140 (498)
T 1e8c_A 107 NLRLVGVT---GTNGKTTTTQLLAQWSQL-LGEISAVM 140 (498)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cCeEEEEe---CCcChHHHHHHHHHHHHh-CCCCEEEE
Confidence 35899997 457899999999999999 99999776
No 432
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=84.95 E-value=0.86 Score=36.65 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=24.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
..+|+| ++--|+||||++..||..|. .+ ++|.|.
T Consensus 14 ~~iI~i-~g~~gsGk~~i~~~la~~lg----~~--~~d~~~ 47 (223)
T 3hdt_A 14 NLIITI-EREYGSGGRIVGKKLAEELG----IH--FYDDDI 47 (223)
T ss_dssp CEEEEE-EECTTSCHHHHHHHHHHHHT----CE--EECHHH
T ss_pred CeEEEE-eCCCCCCHHHHHHHHHHHcC----Cc--EEcHHH
Confidence 456666 68899999999998876654 34 467654
No 433
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=84.68 E-value=0.98 Score=36.66 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=19.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
+..|.+ .+-.|+||||++..|+..+
T Consensus 29 ~~~I~l-~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIF-LGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHh
Confidence 355555 4888999999999887554
No 434
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=84.65 E-value=0.81 Score=37.75 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=32.5
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
...+|+|.|+++.||.|+ ++|..|++ .|.+|+++|.+..
T Consensus 11 ~~~~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~~ 49 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGL-----AVVDALVR-YGAKVVSVSLDEK 49 (269)
T ss_dssp TTTTCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCC-
T ss_pred CCCCCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCCch
Confidence 345799999999999996 67888999 9999999987754
No 435
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.59 E-value=0.55 Score=37.33 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=18.8
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
.|.| .+..|+||||++..||..+
T Consensus 60 ~ili-~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVF-CGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEE-ESCGGGCHHHHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHh
Confidence 4444 5999999999999988876
No 436
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=84.59 E-value=0.53 Score=36.44 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=22.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeE
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKV 64 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~V 64 (295)
++|++ .+..|+||||+...|+..+....|..+
T Consensus 2 ~ii~l-~GpsGaGKsTl~~~L~~~~~~~~~~~~ 33 (186)
T 3a00_A 2 RPIVI-SGPSGTGKSTLLKKLFAEYPDSFGFSV 33 (186)
T ss_dssp CCEEE-ESSSSSSHHHHHHHHHHHCGGGEECCC
T ss_pred CEEEE-ECCCCCCHHHHHHHHHhhCCccceEEe
Confidence 45666 478899999999988877753134433
No 437
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=84.57 E-value=2.3 Score=35.03 Aligned_cols=42 Identities=31% Similarity=0.418 Sum_probs=35.7
Q ss_pred CeEEEEe-eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~-s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+|-|.|+ +--.|.||-.+|+.||..|.. +|.+|-++-+||--
T Consensus 23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk~-~G~~Vt~~K~DPYl 65 (295)
T 2vo1_A 23 MKYILVTGGVISGIGKGIIASSVGTILKS-CGLHVTSIKIDPYI 65 (295)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHHH-TTCCEEEEEEECSS
T ss_pred ceEEEEcCCcccccccHHHHHHHHHHHHH-CCCcceeeecccce
Confidence 4655555 456789999999999999999 99999999999854
No 438
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=84.53 E-value=1.4 Score=36.24 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=32.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 73 (295)
+.++.+.++.||.|| |++.+++..-++ +|.+++++-++...
T Consensus 21 gs~~li~g~p~~~~~-~l~~qfl~~g~~-~Ge~~~~~~~~e~~ 61 (260)
T 3bs4_A 21 SLILIHEEDASSRGK-DILFYILSRKLK-SDNLVGMFSISYPL 61 (260)
T ss_dssp CEEEEEECSGGGCHH-HHHHHHHHHHHH-TTCEEEEEECSSCH
T ss_pred CcEEEEEeCCCccHH-HHHHHHHHHHHH-CCCcEEEEEEeCCH
Confidence 567777545555555 999999999999 99999999988543
No 439
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=84.41 E-value=1.1 Score=40.12 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=29.9
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
..++|+|++. .||||++.-|+..|.. .|++|.++
T Consensus 51 ~~~vI~VTGT---nGKtTT~~~l~~iL~~-~G~~vg~~ 84 (442)
T 1o5z_A 51 EYKTIHIGGT---NGKGSVANMVSNILVS-QGYRVGSY 84 (442)
T ss_dssp SSEEEEEECS---SSHHHHHHHHHHHHHH-HTCCEEEE
T ss_pred cCCEEEEECC---cCHHHHHHHHHHHHHH-CCCCEEEE
Confidence 3589999754 7899999999999999 99999876
No 440
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.36 E-value=1.2 Score=37.08 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=26.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.-+.++ +..|+|||+++..+|..+ +.+++.+++..
T Consensus 51 ~~vll~-G~~GtGKT~la~~la~~l----~~~~~~i~~~~ 85 (310)
T 1ofh_A 51 KNILMI-GPTGVGKTEIARRLAKLA----NAPFIKVEATK 85 (310)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHH----TCCEEEEEGGG
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh----CCCEEEEcchh
Confidence 344444 888999999999888766 45777787654
No 441
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.18 E-value=0.73 Score=36.13 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=20.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la 57 (295)
+++++|+ +..|+||||+...|...+.
T Consensus 4 g~~i~lv-GpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLS-GPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEE-CCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCc
Confidence 4667665 7889999999998877664
No 442
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.17 E-value=0.86 Score=35.96 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=17.0
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHH
Q 022525 34 IAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~l 56 (295)
|++ .+..|+||||++..|+..+
T Consensus 3 I~l-~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVL-MGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEE-ECSTTSSHHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh
Confidence 444 5888999999999887544
No 443
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=84.12 E-value=0.62 Score=46.95 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=28.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHh---CCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~---~g~~VlliD~D~ 71 (295)
.++|+|+ +-||+||||+|..++...... ....|+.+++..
T Consensus 147 ~~~v~i~-G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 147 PGWVTIY-GMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCEEEEE-eCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 5777776 889999999999888764321 234566776654
No 444
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=84.11 E-value=0.77 Score=38.42 Aligned_cols=32 Identities=28% Similarity=0.209 Sum_probs=21.9
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+.++.+-.|+||||++..|+..+ .| ...||.|
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~---~~--~~~i~~D 35 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN---PG--FYNINRD 35 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---TT--EEEECHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhC---CC--cEEeccc
Confidence 34446889999999999877621 23 4556666
No 445
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=84.06 E-value=0.85 Score=36.76 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=30.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+|++.|+++.||.|+ .+|..|++ +|.+|+++|-+.
T Consensus 3 ~k~vlVTGas~GIG~-----a~a~~l~~-~G~~V~~~~r~~ 37 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGR-----ALTIGLVE-RGHQVSMMGRRY 37 (235)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 588999999999996 67888999 999999998763
No 446
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=84.00 E-value=1.2 Score=43.09 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=27.9
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
+.++.+..|+||||+.+.+...+.+..+.+|+++
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 5566799999999999999988886257788776
No 447
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=83.83 E-value=0.78 Score=36.69 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=30.0
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+.++|.|+++.||.|+ +++..|++ +|.+|.+++-+.
T Consensus 4 ~~k~vlVtGasggiG~-----~~a~~l~~-~G~~V~~~~r~~ 39 (234)
T 2ehd_A 4 MKGAVLITGASRGIGE-----ATARLLHA-KGYRVGLMARDE 39 (234)
T ss_dssp CCCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 4688999999999985 67778899 999999997653
No 448
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=83.70 E-value=0.52 Score=39.83 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=28.3
Q ss_pred eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 38 s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.+..|+|||++|..++..... .+...+.|+|...
T Consensus 31 ~Ge~GtGKt~lAr~i~~~~~~-~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 31 HGDSGTGKELVARALHACSAR-SDRPLVTLNCAAL 64 (304)
T ss_dssp ESCTTSCHHHHHHHHHHHSSC-SSSCCCEEECSSC
T ss_pred ECCCCchHHHHHHHHHHhCcc-cCCCeEEEeCCCC
Confidence 488899999999999887777 7888888887643
No 449
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=83.66 E-value=0.97 Score=39.69 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=24.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL 62 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~ 62 (295)
+..++|++ ..|+||||++..++...++ .+.
T Consensus 174 GQr~~IvG-~sG~GKTtLl~~Iar~i~~-~~~ 203 (422)
T 3ice_A 174 GQRGLIVA-PPKAGKTMLLQNIAQSIAY-NHP 203 (422)
T ss_dssp TCEEEEEC-CSSSSHHHHHHHHHHHHHH-HCT
T ss_pred CcEEEEec-CCCCChhHHHHHHHHHHhh-cCC
Confidence 67788874 4699999999999999987 443
No 450
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=83.50 E-value=1.5 Score=40.12 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=29.5
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
..++|+|+ |-.||||++.-|+..|.. .|++|.++
T Consensus 145 ~~~vI~VT---GTnGKTTT~~ml~~iL~~-~G~~~g~~ 178 (535)
T 2wtz_A 145 RLTVIGIT---GTSGKTTTTYLVEAGLRA-AGRVAGLI 178 (535)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cceEEEee---CCCChHHHHHHHHHHHHH-CCCCEEEE
Confidence 35899997 457899999999999999 99999875
No 451
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=83.49 E-value=0.91 Score=36.82 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=30.0
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
|+|++.|+++.||.|+ ++|..|++ .|.+|+++|.+.
T Consensus 1 m~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 36 (247)
T 3dii_A 1 MNRGVIVTGGGHGIGK-----QICLDFLE-AGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3588999999999995 57788999 999999998654
No 452
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.40 E-value=1.1 Score=35.56 Aligned_cols=22 Identities=36% Similarity=0.444 Sum_probs=17.0
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHH
Q 022525 34 IAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~l 56 (295)
|.|. +..|+||+|.|..||..+
T Consensus 3 Iil~-GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFL-GPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHH
T ss_pred EEEE-CCCCCCHHHHHHHHHHHH
Confidence 3343 789999999999887654
No 453
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=83.27 E-value=1.1 Score=33.76 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
+.++++. +.-|+||||+...++..+
T Consensus 33 Ge~v~L~-G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLN-GDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 6788887 677999999999999888
No 454
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=83.19 E-value=0.74 Score=41.40 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=31.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCC-eEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~-~VlliD~D~~ 72 (295)
+.++++. +.-|+||||+..-|+-.+.. .+. +++.+|.|+.
T Consensus 138 Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p-~~G~~pI~vdg~~~ 178 (460)
T 2npi_A 138 GPRVVIV-GGSQTGKTSLSRTLCSYALK-FNAYQPLYINLDPQ 178 (460)
T ss_dssp CCCEEEE-ESTTSSHHHHHHHHHHTTHH-HHCCCCEEEECCTT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCcccc-cCCceeEEEcCCcc
Confidence 6778887 77899999999999988876 444 6567887764
No 455
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=82.94 E-value=0.97 Score=35.71 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=20.8
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
|+| .+..|+||||++..|+..+ |..+ ||.|
T Consensus 3 I~l-~G~~GsGKsT~a~~L~~~~----g~~~--i~~d 32 (214)
T 1e4v_A 3 IIL-LGAPVAGKGTQAQFIMEKY----GIPQ--ISTG 32 (214)
T ss_dssp EEE-EESTTSSHHHHHHHHHHHH----CCCE--EEHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh----CCeE--EeHH
Confidence 444 4677999999999887655 4444 5553
No 456
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=82.92 E-value=1.1 Score=34.45 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=18.8
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHH
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALA 57 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la 57 (295)
++++ +.-|+||||+...|+-.+.
T Consensus 3 i~l~-G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIIT-GEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEE-CCTTSSHHHHHHHHHHHHG
T ss_pred EEEE-CCCCCCHHHHHHHHHHHhC
Confidence 4554 8899999999999888774
No 457
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.89 E-value=1.5 Score=38.82 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=30.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.++.+ +.-|+|||++...+...+.. .|.+|+++|...
T Consensus 55 h~~i~--G~tGsGKs~~~~~li~~~~~-~g~~viv~Dpkg 91 (437)
T 1e9r_A 55 HLLVN--GATGTGKSVLLRELAYTGLL-RGDRMVIVDPNG 91 (437)
T ss_dssp CEEEE--ECTTSSHHHHHHHHHHHHHH-TTCEEEEEEETT
T ss_pred eEEEE--CCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence 44444 77899999998888888888 899999998653
No 458
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=82.81 E-value=1.2 Score=36.28 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=31.4
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.-.+|++.|+++.||.|+ ++|..|++ +|.+|.++|-+.
T Consensus 16 ~~~~k~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~ 53 (249)
T 1o5i_A 16 GIRDKGVLVLAASRGIGR-----AVADVLSQ-EGAEVTICARNE 53 (249)
T ss_dssp CCTTCEEEEESCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred ccCCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEcCCH
Confidence 334789999999999996 56778899 999999998664
No 459
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=82.80 E-value=1 Score=36.20 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=30.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+|++.|+++.||.|+ .++..|++ +|.+|.++|-+.
T Consensus 2 ~k~vlVTGas~giG~-----~~a~~l~~-~G~~V~~~~r~~ 36 (239)
T 2ekp_A 2 ERKALVTGGSRGIGR-----AIAEALVA-RGYRVAIASRNP 36 (239)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999999999996 57778999 999999998765
No 460
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=82.68 E-value=0.54 Score=37.28 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=22.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.+|++ .+.-|+||||++..|+.. .|.. ++|.|.
T Consensus 4 ~~i~i-~G~~gsGkst~~~~l~~~----~g~~--~~~~d~ 36 (219)
T 2h92_A 4 INIAL-DGPAAAGKSTIAKRVASE----LSMI--YVDTGA 36 (219)
T ss_dssp CCEEE-ECCTTSSHHHHHHHHHHH----TTCE--EEEHHH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHh----cCCc--eecCCh
Confidence 45655 478899999999876543 4544 577764
No 461
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=82.64 E-value=0.93 Score=35.68 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=21.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la 57 (295)
+.++++. +..|+||||+...|+-.+.
T Consensus 20 Gei~~l~-GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLS-GPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 5788886 7889999999998877663
No 462
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=82.54 E-value=4 Score=31.64 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=59.5
Q ss_pred CeEEEEeeCCCCCcHHHH-HHHHHHHHHHhCCCeEEEEEeCCCCCCcccccccCCC-cc-ccccCcccccccCCceeecc
Q 022525 31 KDVIAVASGKGGVGKSTT-AVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PE-VTKDMKMVPIENYGVKCMSM 107 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~-a~~LA~~la~~~g~~VlliD~D~~~~~~~~~~g~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 107 (295)
.+.++++|+-||++|++- ...|+..... .|++|.++--|-.. ...++.... .+ ......... ....+-+.
T Consensus 50 ~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-~Gr~V~vLAp~~~s---~~~l~~~~~l~~~t~t~~~ll~---~~~~~tp~ 122 (189)
T 2l8b_A 50 RPSLAIVSGQGGAAGQRERVAELVMMARE-QGREVQIIAADRRS---QMNMKQDERLSGELITGRRQLL---EGMAFTPG 122 (189)
T ss_dssp SCCEECCBCSSCSHHHHHHHHHHHHHHHH-TTCCEEEECSTTHH---HHHHSCTTTCSSCSSSTTTTTT---TSCCCCCC
T ss_pred CCceEEEecccchHHHHHHHHHHHHHHHh-cCeEEEEEcCchHH---HHHHHhhcCcCcceeehhhhhc---CCCCCCCC
Confidence 467889999999999988 5556666666 99999999544211 112211110 00 000000000 00000010
Q ss_pred ccccCCCCCCccCCchHHHHHHHHHHhccCCCccEEEEcCCCCCC
Q 022525 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152 (295)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~yD~iiiD~~~~~~ 152 (295)
+.+ ..+..+....+++..+++..+..+-.+|++|.....+
T Consensus 123 s~l-----IVD~AekLS~kE~~~Lld~A~~~naqvvll~~~~RqG 162 (189)
T 2l8b_A 123 STV-----IVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTG 162 (189)
T ss_dssp CEE-----EEEESSSHHHHHHHHHHHHHHHTTCCEEEEESSTTTC
T ss_pred CEE-----EEechhhcCHHHHHHHHHHHHhcCCEEEEeCCccccc
Confidence 000 1112355667788888887765678889988885444
No 463
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=82.53 E-value=1.1 Score=35.72 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=17.0
Q ss_pred EeeCCCCCcHHHHHHHHHHHH
Q 022525 36 VASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 36 i~s~kGGvGKTt~a~~LA~~l 56 (295)
++.+-.|+||||++..|+..+
T Consensus 4 ~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 335889999999999887655
No 464
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=82.46 E-value=1.1 Score=37.00 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=30.9
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++|++.|+++.||.|+ .+|..|++ .|.+|+++|-+.
T Consensus 15 ~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~ 50 (266)
T 3p19_A 15 MKKLVVITGASSGIGE-----AIARRFSE-EGHPLLLLARRV 50 (266)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHH-TTCCEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 4689999999999997 67788999 999999998653
No 465
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=82.38 E-value=0.8 Score=37.60 Aligned_cols=39 Identities=15% Similarity=0.027 Sum_probs=31.1
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
...+|++.|+++.||.|+ ++|..|++ .|.+|+++|-+..
T Consensus 24 ~l~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~~ 62 (260)
T 3gem_A 24 TLSSAPILITGASQRVGL-----HCALRLLE-HGHRVIISYRTEH 62 (260)
T ss_dssp ---CCCEEESSTTSHHHH-----HHHHHHHH-TTCCEEEEESSCC
T ss_pred CCCCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCChH
Confidence 334689999999999886 67888999 9999999987653
No 466
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=82.31 E-value=1.9 Score=33.80 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=41.2
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHH-HHHHHHHhc--CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDA-RKGITMFSK--VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~-~~~~~~l~~--~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.++++..... .++..+ ...+..+.+ .+.+ +.+|.|+.|.
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 144 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDL 144 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhh
Confidence 45779999999643322233334557898888887654 355555 344444443 2344 4599999985
No 467
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=82.27 E-value=1.3 Score=34.99 Aligned_cols=38 Identities=13% Similarity=0.290 Sum_probs=30.5
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEEeCCC
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVY 72 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la-~~~g~~VlliD~D~~ 72 (295)
.|+|+|.|+++.||+|+ .++..|+ + .|.+|.+++-++.
T Consensus 3 ~mmk~vlVtGasg~iG~-----~~~~~l~~~-~g~~V~~~~r~~~ 41 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQ-----XLTATLLTY-TDMHITLYGRQLK 41 (221)
T ss_dssp CSCSEEEEESTTSHHHH-----HHHHHHHHH-CCCEEEEEESSHH
T ss_pred ceEEEEEEEeCCcHHHH-----HHHHHHHhc-CCceEEEEecCcc
Confidence 35788999999999995 5666777 7 8999999987643
No 468
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=82.06 E-value=1.4 Score=35.78 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=31.2
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+|++.|+++.||.|+ ++|..|++ .|.+|+++|.+..
T Consensus 7 ~k~~lVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 7 SRVFIVTGASSGLGA-----AVTRMLAQ-EGATVLGLDLKPP 42 (257)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCChH
Confidence 689999999999996 57788999 9999999987754
No 469
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=82.06 E-value=1.3 Score=35.92 Aligned_cols=37 Identities=30% Similarity=0.276 Sum_probs=31.2
Q ss_pred CCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 29 ~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
-.+|++.|+++.||.|+ ++|..|++ +|.+|+++|-+.
T Consensus 7 ~~~k~vlITGas~giG~-----~~a~~l~~-~G~~V~~~~r~~ 43 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQ-----AYAEALAR-EGAAVVVADINA 43 (253)
T ss_dssp TTTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred cCCCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEcCCH
Confidence 34689999999999985 77888999 999999997653
No 470
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=82.03 E-value=2.5 Score=40.48 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.3
Q ss_pred eeCCCCCcHHHHHHHHHHHHHH
Q 022525 37 ASGKGGVGKSTTAVNLAVALAS 58 (295)
Q Consensus 37 ~s~kGGvGKTt~a~~LA~~la~ 58 (295)
..+..|||||+++-.||..+..
T Consensus 206 L~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 206 LIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp EESCTTTTTHHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 3488999999999999999875
No 471
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=81.98 E-value=0.87 Score=36.41 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=28.1
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
||++.|+++.||.|+ .+|..|++ +|.+|+++|-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITGASSGLGA-----ELAKLYDA-EGKATYLTGRSE 35 (230)
T ss_dssp --CEEEESTTSHHHH-----HHHHHHHH-TTCCEEEEESCH
T ss_pred CCEEEEecCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 478899999999886 56778899 999999998664
No 472
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=81.97 E-value=1.4 Score=37.21 Aligned_cols=67 Identities=10% Similarity=-0.036 Sum_probs=41.6
Q ss_pred CCccEEEEcCCCCCCc-----cchhhhhhccCceEEEeeCCCc-chHHHHHHHHHHHhc-----CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGD-----AQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK-----VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~-----~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~-----~~~~~~~~ViN~~~~ 205 (295)
+.+.+.|+|+|+.... .......+..+|.+++|.+.+. .++..+....+++.. .+.++ .+|+||.|.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~pi-ilv~NK~Dl 127 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKI-FVLLHKMDL 127 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEE-EEEEECGGG
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeE-EEEEecccc
Confidence 4577999999964321 1222333457899999988765 455666544444432 24454 599999984
No 473
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=81.83 E-value=1.5 Score=35.45 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=30.6
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.+|++.|+++.||.|+ .++..|++ .|.+|+++|-+.
T Consensus 6 ~~k~vlVTGas~giG~-----~ia~~l~~-~G~~V~~~~r~~ 41 (250)
T 2fwm_X 6 SGKNVWVTGAGKGIGY-----ATALAFVE-AGAKVTGFDQAF 41 (250)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCC
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCch
Confidence 3589999999999997 56788999 999999998764
No 474
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=81.81 E-value=1.4 Score=36.54 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=31.7
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
...+|++.|+++.||.|+ ++|..|++ +|.+|+++|.+.
T Consensus 24 ~l~~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~ 61 (277)
T 4dqx_A 24 DLNQRVCIVTGGGSGIGR-----ATAELFAK-NGAYVVVADVNE 61 (277)
T ss_dssp TTTTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCCCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 344699999999999986 67788999 999999998653
No 475
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=81.72 E-value=1.2 Score=35.95 Aligned_cols=36 Identities=28% Similarity=0.195 Sum_probs=30.7
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.+|++.|+++.||.|+ ++|..|++ +|.+|++++-+.
T Consensus 4 ~~k~vlITGas~gIG~-----~~a~~l~~-~G~~v~~~~r~~ 39 (247)
T 3lyl_A 4 NEKVALVTGASRGIGF-----EVAHALAS-KGATVVGTATSQ 39 (247)
T ss_dssp TTCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3689999999999986 67888999 999999998654
No 476
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=81.64 E-value=1.3 Score=35.96 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=29.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
||++.|+++.||.|+ +++..|++ +|.+|++++-+.
T Consensus 1 mk~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~ 35 (257)
T 1fjh_A 1 MSIIVISGCATGIGA-----ATRKVLEA-AGHQIVGIDIRD 35 (257)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSS
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCCc
Confidence 478899999999987 56778899 999999998764
No 477
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=81.61 E-value=0.91 Score=36.19 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=20.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
+.+++|+ +..|+||||+.-.|+..+
T Consensus 23 G~~~~lv-GpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVIC-GPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEE-CSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 5778776 788999999999887755
No 478
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=81.57 E-value=1.6 Score=35.97 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=31.4
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.+|++.|+++.||.|+ ++|..|++ +|.+|+++|.+..
T Consensus 10 ~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~~ 46 (271)
T 3tzq_B 10 ENKVAIITGACGGIGL-----ETSRVLAR-AGARVVLADLPET 46 (271)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEECTTS
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEcCCHH
Confidence 3689999999999985 67788999 9999999987643
No 479
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=81.55 E-value=1.4 Score=34.71 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=34.9
Q ss_pred CCccEEEEcCCCCCCccchhhhhhccCceEEEeeCCCc-chHHHHH-HHHHHHhc--CCCCeeeEEeccccC
Q 022525 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSK--VQVPILGLVENMSCF 205 (295)
Q Consensus 138 ~~yD~iiiD~~~~~~~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~-~~~~~l~~--~~~~~~~~ViN~~~~ 205 (295)
..+.+.|+|+|+...........+..+|.+++|..... .++..+. ..++.+.. .+.++ .+|.|+.|.
T Consensus 80 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 150 (214)
T 2j1l_A 80 KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPI-IVVGCKTDL 150 (214)
T ss_dssp EEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCE-EEEEECGGG
T ss_pred EEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhh
Confidence 34678999999643322222333557888888887654 4555554 34444443 24555 499999984
No 480
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=81.49 E-value=0.97 Score=35.69 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
|++ .+..|+||||++..|+. + .|..+ ||.|
T Consensus 3 I~l-~G~~GsGKsT~a~~L~~---~-~~~~~--i~~d 32 (216)
T 3dl0_A 3 LVL-MGLPGAGKGTQGERIVE---K-YGIPH--ISTG 32 (216)
T ss_dssp EEE-ECSTTSSHHHHHHHHHH---H-SSCCE--EEHH
T ss_pred EEE-ECCCCCCHHHHHHHHHH---H-hCCcE--EeHH
Confidence 444 48889999999987764 3 45444 5554
No 481
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=81.46 E-value=1.1 Score=34.19 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=16.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVN 51 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~ 51 (295)
+.+++++ +..|+||||++..
T Consensus 9 gei~~l~-G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLI-GSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEE-CCTTSCHHHHHHH
T ss_pred CEEEEEE-CCCCCCHHHHHHH
Confidence 5778876 7889999999985
No 482
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=81.42 E-value=1.5 Score=35.80 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=31.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+|++.|+++.+|.|+ .+|..|++ .|.+|++.|.|..
T Consensus 11 GK~alVTGas~GIG~-----aia~~la~-~Ga~Vv~~~~~~~ 46 (242)
T 4b79_A 11 GQQVLVTGGSSGIGA-----AIAMQFAE-LGAEVVALGLDAD 46 (242)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSTT
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCCHH
Confidence 799999999999996 46888999 9999999998754
No 483
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=81.33 E-value=1.3 Score=36.80 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=31.1
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
.+|++.|+++.||.|+ .+|..|++ .|.+|+++|.+.
T Consensus 28 ~gk~vlVTGas~gIG~-----aia~~la~-~G~~V~~~~r~~ 63 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGL-----AVARRLAD-EGCHVLCADIDG 63 (277)
T ss_dssp TTCEEEETTTTSTHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 4689999999999996 67888999 999999998654
No 484
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=81.27 E-value=2.3 Score=38.00 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=27.9
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 67 (295)
.++|+|++. .||||++.-+++.|.. .|++|.+.
T Consensus 112 ~~~IaVTGT---nGKTTTt~ml~~iL~~-~g~~~~~~ 144 (451)
T 3lk7_A 112 SQLIGITGS---NGKTTTTTMIAEVLNA-GGQRGLLA 144 (451)
T ss_dssp SEEEEEECS---SCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHHh-cCCCEEEe
Confidence 489999855 5699999999999999 99988553
No 485
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=81.21 E-value=0.68 Score=41.05 Aligned_cols=34 Identities=29% Similarity=0.281 Sum_probs=22.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
..+.++.+-.|+||||++..|+.. .|. ..||.|.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~----~~~--~~i~~D~ 291 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS----AGY--VHVNRDT 291 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG----GTC--EECCGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh----cCc--EEEccch
Confidence 344455688999999999877643 332 4456554
No 486
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=81.16 E-value=1.4 Score=35.82 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=30.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+|++.|+++.||.|+ .+|..|++ +|.+|+++|-+.
T Consensus 7 ~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~ 41 (252)
T 3h7a_A 7 NATVAVIGAGDYIGA-----EIAKKFAA-EGFTVFAGRRNG 41 (252)
T ss_dssp SCEEEEECCSSHHHH-----HHHHHHHH-TTCEEEEEESSG
T ss_pred CCEEEEECCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 689999999999985 67788999 999999998764
No 487
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=81.11 E-value=1.4 Score=36.66 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=32.9
Q ss_pred CCCCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 28 ~~~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
...+|++.|+++.||.|+ ++|..|++ +|.+|+++|-+..
T Consensus 6 ~l~~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~~ 44 (285)
T 3sc4_A 6 SLRGKTMFISGGSRGIGL-----AIAKRVAA-DGANVALVAKSAE 44 (285)
T ss_dssp CCTTCEEEEESCSSHHHH-----HHHHHHHT-TTCEEEEEESCCS
T ss_pred CCCCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEECChh
Confidence 334689999999999996 67888999 9999999988764
No 488
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=81.03 E-value=0.91 Score=35.39 Aligned_cols=18 Identities=50% Similarity=0.567 Sum_probs=14.7
Q ss_pred EeeCCCCCcHHHHHHHHH
Q 022525 36 VASGKGGVGKSTTAVNLA 53 (295)
Q Consensus 36 i~s~kGGvGKTt~a~~LA 53 (295)
|.++..|+||||+...|.
T Consensus 5 Vi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 5 VISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 457999999999987653
No 489
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=81.02 E-value=1.4 Score=35.32 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=30.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+|++.|+++.||.|+ .++..|++ +|.+|+++|-+..
T Consensus 3 ~k~vlITGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~~ 38 (236)
T 1ooe_A 3 SGKVIVYGGKGALGS-----AILEFFKK-NGYTVLNIDLSAN 38 (236)
T ss_dssp CEEEEEETTTSHHHH-----HHHHHHHH-TTEEEEEEESSCC
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEecCcc
Confidence 588999999999885 67788999 9999999987754
No 490
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.79 E-value=1.5 Score=40.06 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=25.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 70 (295)
+.+.| .+..|+||||++..+|..+ |..++.+++.
T Consensus 78 ~~lLL-~GppGtGKTtla~~la~~l----~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAML-YGPPGIGKTTAAHLVAQEL----GYDILEQNAS 111 (516)
T ss_dssp SEEEE-ECSTTSSHHHHHHHHHHHT----TCEEEEECTT
T ss_pred cEEEE-ECCCCCCHHHHHHHHHHHc----CCCEEEEeCC
Confidence 45554 5888999999999776554 7788777654
No 491
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=80.77 E-value=1.1 Score=37.06 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=30.6
Q ss_pred CCeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 30 ~~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
++|++.|+++.||.|+ +++..|++ +|.+|+++|-+.
T Consensus 4 ~~k~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~ 39 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGR-----AIAEAAVA-AGDTVIGTARRT 39 (281)
T ss_dssp CCCEEEETTTTSHHHH-----HHHHHHHH-TTCEEEEEESSG
T ss_pred CCcEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3689999999999996 67788999 999999998664
No 492
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=80.68 E-value=1.6 Score=33.67 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=20.0
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCe
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK 63 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~ 63 (295)
++-|.|. +..|+||||+|..| .+ +|++
T Consensus 16 G~gvli~-G~SGaGKStlal~L----~~-rG~~ 42 (181)
T 3tqf_A 16 KMGVLIT-GEANIGKSELSLAL----ID-RGHQ 42 (181)
T ss_dssp TEEEEEE-ESSSSSHHHHHHHH----HH-TTCE
T ss_pred CEEEEEE-cCCCCCHHHHHHHH----HH-cCCe
Confidence 5666665 78899999999855 45 6654
No 493
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=80.59 E-value=1.3 Score=35.37 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=19.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHH
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~l 56 (295)
+.+++++ +..|+||||+...|+..+
T Consensus 16 G~ii~l~-GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVS-APSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhccC
Confidence 4667665 889999999998776654
No 494
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.59 E-value=1.3 Score=43.08 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=31.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 33 vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
.+.| .+..|+|||++|..|+..+.. .+.+.+.|||...
T Consensus 590 ~vLl-~Gp~GtGKT~lA~~la~~~~~-~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 590 SFLF-LGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTEY 627 (854)
T ss_dssp EEEE-BSCSSSSHHHHHHHHHHHHHS-SGGGEEEECTTTC
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHhcC-CCCcEEEEechhc
Confidence 4444 588899999999999999988 7889988987644
No 495
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=80.53 E-value=1.3 Score=36.04 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=29.8
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+|++.|+++.||.|+ .++..|++ .|.+|.++|-+.
T Consensus 2 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 36 (256)
T 1geg_A 2 KKVALVTGAGQGIGK-----AIALRLVK-DGFAVAIADYND 36 (256)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 588999999999996 57788999 999999997653
No 496
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=80.52 E-value=1.4 Score=35.55 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=29.4
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+|++.|+++.||.|+ +++..|++ +|.+|+++|-+.
T Consensus 2 ~k~vlItGasggiG~-----~~a~~l~~-~G~~V~~~~r~~ 36 (250)
T 2cfc_A 2 SRVAIVTGASSGNGL-----AIATRFLA-RGDRVAALDLSA 36 (250)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999999999886 66778899 999999998653
No 497
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=80.48 E-value=1.7 Score=41.98 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=27.7
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEE
Q 022525 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (295)
Q Consensus 34 I~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 68 (295)
+.++.+..|+|||++.+.+...+.+..+.+|+++-
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a 411 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 411 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 45566889999999999998877652578888873
No 498
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=80.45 E-value=1.4 Score=35.15 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=29.5
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
+|++.|+++.||.|+ ++|..|++ +|.+|++++-+.
T Consensus 2 ~k~vlITGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 36 (235)
T 3l77_A 2 MKVAVITGASRGIGE-----AIARALAR-DGYALALGARSV 36 (235)
T ss_dssp CCEEEEESCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 588999999999885 67778899 999999997654
No 499
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=80.38 E-value=1.5 Score=35.34 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=30.6
Q ss_pred CeEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Q 022525 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (295)
Q Consensus 31 ~~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 72 (295)
+|++.|+++.||+|+ +++..|++ +|.+|.++|-+..
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~~ 42 (241)
T 1dhr_A 7 ARRVLVYGGRGALGS-----RCVQAFRA-RNWWVASIDVVEN 42 (241)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHT-TTCEEEEEESSCC
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHh-CCCEEEEEeCChh
Confidence 588999999999886 56778899 9999999987754
No 500
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.31 E-value=1.7 Score=37.65 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=25.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCC
Q 022525 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (295)
Q Consensus 32 ~vI~i~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 71 (295)
..|.+ .+..|+|||++|..+|..+ +.+++.+|+..
T Consensus 73 ~~ill-~Gp~GtGKT~la~~la~~l----~~~~~~~~~~~ 107 (376)
T 1um8_A 73 SNILL-IGPTGSGKTLMAQTLAKHL----DIPIAISDATS 107 (376)
T ss_dssp CCEEE-ECCTTSSHHHHHHHHHHHT----TCCEEEEEGGG
T ss_pred CCEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEecchh
Confidence 34444 4778999999999887654 66777777654
Done!