Query 022527
Match_columns 295
No_of_seqs 257 out of 1300
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:56:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vj8_A Squalene synthase; farn 100.0 2.6E-61 8.8E-66 459.8 24.4 244 2-248 96-342 (343)
2 3acx_A Dehydrosqualene synthas 100.0 3.3E-39 1.1E-43 300.6 19.4 180 21-207 105-286 (293)
3 4hd1_A Squalene synthase HPNC; 100.0 3.7E-37 1.3E-41 287.3 16.4 179 23-208 103-283 (294)
4 3lom_A Geranyltranstransferase 95.1 0.21 7.2E-06 46.4 12.0 130 18-162 144-287 (313)
5 2q80_A Geranylgeranyl pyrophos 94.9 1.4 4.8E-05 40.4 16.9 143 17-163 111-283 (301)
6 3lmd_A Geranylgeranyl pyrophos 94.8 0.11 3.8E-06 49.2 9.4 147 13-163 156-335 (360)
7 3tc1_A Octaprenyl pyrophosphat 94.8 0.45 1.5E-05 44.2 13.3 149 11-163 116-294 (315)
8 3rmg_A Octaprenyl-diphosphate 94.6 0.35 1.2E-05 45.2 12.1 145 16-163 132-309 (334)
9 1rtr_A Geranyltranstransferase 94.4 0.43 1.5E-05 43.9 12.0 122 27-162 148-275 (301)
10 4dhd_A Polyprenyl synthetase; 94.3 0.25 8.6E-06 46.6 10.5 140 19-162 134-321 (358)
11 2ftz_A Geranyltranstransferase 94.3 0.82 2.8E-05 41.8 13.7 129 17-161 134-267 (284)
12 3mzv_A Decaprenyl diphosphate 94.1 0.34 1.2E-05 45.4 10.9 143 17-163 139-316 (341)
13 4f62_A Geranyltranstransferase 94.1 0.77 2.6E-05 42.7 13.2 129 20-162 139-279 (317)
14 3lsn_A Geranyltranstransferase 94.0 0.87 3E-05 42.0 13.2 130 19-162 139-280 (304)
15 3p8r_A Geranyltranstransferase 93.9 0.43 1.5E-05 44.0 11.0 122 27-162 158-286 (302)
16 3m0g_A Farnesyl diphosphate sy 93.8 0.16 5.3E-06 46.9 7.9 122 27-162 147-273 (297)
17 3aqb_B Component B of hexapren 93.4 1.5 5E-05 40.6 13.8 94 17-113 130-241 (325)
18 1v4e_A Octoprenyl-diphosphate 93.4 0.62 2.1E-05 42.8 11.1 93 17-112 127-232 (299)
19 3ipi_A Geranyltranstransferase 93.3 1.5 5.1E-05 40.2 13.6 132 14-162 124-266 (295)
20 3ts7_A Geranyltranstransferase 93.2 0.53 1.8E-05 43.9 10.5 129 20-162 146-286 (324)
21 3nf2_A Putative polyprenyl syn 93.1 1.2 4E-05 42.0 12.8 140 18-161 144-324 (352)
22 3p8l_A Geranyltranstransferase 93.1 0.64 2.2E-05 42.9 10.6 121 27-161 156-282 (302)
23 3uca_A Geranyltranstransferase 93.0 0.91 3.1E-05 42.3 11.7 122 27-162 180-308 (324)
24 1wmw_A Geranylgeranyl diphosph 92.9 1.8 6E-05 40.2 13.5 94 17-113 130-241 (330)
25 1yhl_A Farnesyl pyrophosphate 92.9 1.7 5.8E-05 40.8 13.6 93 18-113 152-279 (362)
26 1rqj_A Geranyltranstransferase 92.7 0.57 1.9E-05 43.0 9.8 121 27-161 152-279 (299)
27 2h8o_A Geranyltranstransferase 92.7 0.53 1.8E-05 44.1 9.6 121 27-161 192-318 (335)
28 3pko_A Geranylgeranyl pyrophos 92.6 1.6 5.5E-05 40.6 12.9 144 16-162 142-316 (334)
29 3apz_A Geranyl diphosphate syn 92.4 4 0.00014 38.0 15.3 142 17-161 153-323 (348)
30 3pde_A Farnesyl-diphosphate sy 92.3 1.6 5.4E-05 40.4 12.2 120 27-160 155-280 (309)
31 3oyr_A Trans-isoprenyl diphosp 91.8 2.3 7.8E-05 39.9 12.9 144 17-163 151-328 (345)
32 2qis_A Farnesyl pyrophosphate 91.7 3.4 0.00012 39.0 14.0 93 18-113 177-293 (374)
33 2ihi_A Pyrophosphate synthase; 91.6 4.4 0.00015 38.6 14.8 140 19-162 180-378 (395)
34 2e8v_A Geranylgeranyl pyrophos 91.2 2.6 9E-05 39.2 12.6 93 18-113 132-244 (340)
35 1uby_A FPS, farnesyl diphospha 90.5 3.4 0.00012 38.9 12.8 93 18-113 170-286 (367)
36 3llw_A Geranyltranstransferase 89.9 5.9 0.0002 36.5 13.6 118 27-160 159-283 (311)
37 3npk_A Geranyltranstransferase 89.0 2.8 9.5E-05 38.4 10.5 121 26-162 144-270 (291)
38 3lk5_A Geranylgeranyl pyrophos 88.7 4.7 0.00016 38.2 12.3 138 21-161 179-353 (380)
39 1wy0_A Geranylgeranyl pyrophos 87.7 3.9 0.00013 38.0 10.8 93 19-114 139-249 (342)
40 3dyh_A Farnesyl pyrophosphate 87.7 11 0.00038 35.7 14.1 92 19-113 181-307 (390)
41 2her_A Fragment, farnesyl pyro 87.0 13 0.00045 35.0 14.2 139 19-162 170-338 (368)
42 2azj_A Geranylgeranyl pyrophos 86.5 7.1 0.00024 35.5 11.7 122 15-161 133-261 (289)
43 3mav_A Farnesyl pyrophosphate 83.3 31 0.001 32.5 15.1 92 20-114 181-316 (395)
44 2j1p_A Geranylgeranyl pyrophos 76.9 25 0.00084 31.8 11.5 114 19-160 147-274 (293)
45 2q58_A Fragment, farnesyl pyro 74.1 57 0.002 30.4 13.9 91 20-113 171-279 (368)
46 3kra_B Geranyl diphosphate syn 63.0 18 0.00062 32.5 7.2 73 19-91 136-219 (274)
47 1n1b_A (+)-bornyl diphosphate 58.5 1.4E+02 0.0049 29.3 16.7 102 40-153 388-498 (549)
48 3v1v_A 2-MIB synthase, 2-methy 54.3 1.4E+02 0.0049 28.4 12.3 106 39-156 281-393 (433)
49 3kb9_A EPI-isozizaene synthase 50.7 1.5E+02 0.0052 27.3 15.8 132 15-158 175-317 (382)
50 1ps1_A Pentalenene synthase; a 39.2 2E+02 0.007 25.4 17.6 131 15-157 132-274 (337)
51 1yfb_A Transition state regula 36.4 15 0.00051 25.5 1.6 22 105-126 21-42 (59)
52 4fp4_A Polyprenyl synthetase; 33.0 44 0.0015 30.3 4.6 80 12-97 128-210 (285)
53 3qkc_B Geranyl diphosphate syn 32.4 1.1E+02 0.0036 27.3 7.0 71 19-90 138-219 (273)
54 2l66_A SSO7C4, transcriptional 31.8 23 0.0008 23.6 1.9 21 105-125 11-31 (53)
55 3g4d_A (+)-delta-cadinene synt 20.5 6.2E+02 0.021 24.9 16.1 99 39-151 392-500 (554)
No 1
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=100.00 E-value=2.6e-61 Score=459.76 Aligned_cols=244 Identities=50% Similarity=0.868 Sum_probs=232.9
Q ss_pred CccchHHHHHcccChhhhhHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCCC---ChhH
Q 022527 2 DQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL---APDS 78 (295)
Q Consensus 2 ~~f~~v~~~~~~L~~~~~~~i~di~~~m~~GMa~dl~~~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~~~~~~~---~~~~ 78 (295)
++||.|+.+|..|++.++++|.+++++|++||++|+.++|+|++||+.|||+|||+||+|++++|+.++.+++ ...+
T Consensus 96 ~~~p~v~~~f~~l~~~~~~~i~~~~~~m~~gm~~dl~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~~~~~~~ 175 (343)
T 3vj8_A 96 EDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTE 175 (343)
T ss_dssp HTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHHHHHCHH
T ss_pred hcCcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccchhhhHHH
Confidence 3688899999999999999999999999999999999899999999999999999999999999987532222 2458
Q ss_pred HHHHHHHHHHHHHHHhchHhhhhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022527 79 LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSA 158 (295)
Q Consensus 79 ~A~slG~aLQltNILRD~~ED~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~ 158 (295)
.|++||.|+|+||||||++||+. +||+|||.|+|.+||++.+|+..+++++++++|+++++.+|+.|+.+|+.|++.
T Consensus 176 ~A~~lG~AlQltNilRDv~eD~~---~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~ 252 (343)
T 3vj8_A 176 RANSMGLFLQKTNIIRDYLEDQQ---GGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSR 252 (343)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHH---TTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHh---CCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCccccChHHHHHHHHHhcChhhHHHHHHHHHHHhccccCCCCCCHHHH
Q 022527 159 LRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKT 238 (295)
Q Consensus 159 l~~~~~~~fcaiP~~mAiatL~~~~~n~~Vf~~~vki~k~~~~~l~~ra~~~~~v~~~f~~~~~~i~~k~~~~dp~~~~~ 238 (295)
+|++++++||++|+.||++||..+++|++||+++|||+|++++|++|+++|+++|+.+|++|+++|++|++|+||||.+|
T Consensus 253 L~~~~~~~~~~ip~~lA~~tL~~i~~~~~v~~~rvkisr~~~~~l~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (343)
T 3vj8_A 253 LRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKT 332 (343)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTCGGGGTSCCCCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHTTCCTTCTTHHHH
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHhCCccccCCCcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHhhCCCCCCCHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 022527 239 LSRVEAIQKA 248 (295)
Q Consensus 239 ~~~~~~i~~~ 248 (295)
.++|++|++.
T Consensus 333 ~~~~~~~~~~ 342 (343)
T 3vj8_A 333 RQIISTIRTQ 342 (343)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999999873
No 2
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=100.00 E-value=3.3e-39 Score=300.62 Aligned_cols=180 Identities=17% Similarity=0.175 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHhhcc-ccCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCCCChhHHHHHHHHHHHHHHHHhchHhh
Q 022527 21 AIEDITKRMGAGMAKFICK-EVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRDYLED 99 (295)
Q Consensus 21 ~i~di~~~m~~GMa~dl~~-~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~~~~~~~~~~~~A~slG~aLQltNILRD~~ED 99 (295)
+-.+.+.+|++||++|+.+ +|+|++||+.|||+|||+||+|++++|+.+. .....+.|++||.|+|+||||||++||
T Consensus 105 l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~~A~~lG~AlQltNilRDv~eD 182 (293)
T 3acx_A 105 IAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYDVARRLGESLQLINILRDVGED 182 (293)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999985 7999999999999999999999999998541 133558999999999999999999999
Q ss_pred hhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhHHHHHHHH
Q 022527 100 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTL 179 (295)
Q Consensus 100 ~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~~~~~~fcaiP~~mAiatL 179 (295)
+. +||+|||.|+|.+||++.+|+.++++++++++++.+++.+|+.|+.+|+.+++.+|.++. .+|.++..++.++|
T Consensus 183 ~~---~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r-~~~~~~~~~~~~iL 258 (293)
T 3acx_A 183 FE---NERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQ-PIIELAARIYIEIL 258 (293)
T ss_dssp HH---TTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHH-HHHHHHHHHHHHHH
T ss_pred Hh---CCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH-HHHHHHHHHHHHHH
Confidence 99 899999999999999999999999999999999999999999999999999999998873 45677789999999
Q ss_pred HHHh-cCCCCCCCccccChHHHHHHHHHh
Q 022527 180 ALCY-NNIEVFRGVVKMRRGLTAKVIDRT 207 (295)
Q Consensus 180 ~~~~-~n~~Vf~~~vki~k~~~~~l~~ra 207 (295)
..+. +|++ |++++++++++++|++|++
T Consensus 259 ~~i~~~~~~-~~~r~~v~~~~k~~~~~~a 286 (293)
T 3acx_A 259 DEVRQANYT-LHERVFVEKRKKAKLFHEI 286 (293)
T ss_dssp HHHHHTTTC-SSSCCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCC-CCCCceeCHHHHHHHHHHH
Confidence 9887 7899 9999999999999999987
No 3
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=3.7e-37 Score=287.28 Aligned_cols=179 Identities=18% Similarity=0.193 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHhhc-cccCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCCCChhHHHHHHHHHHHHHHHHhchHhhhh
Q 022527 23 EDITKRMGAGMAKFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDIN 101 (295)
Q Consensus 23 ~di~~~m~~GMa~dl~-~~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~~~~~~~~~~~~A~slG~aLQltNILRD~~ED~~ 101 (295)
.+.+.+|++||++|+. .+++|++||+.|||+|||+||+|++++|+.. +....+.|.++|.|||+|||+||++||+.
T Consensus 103 ~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~---~~~~~~~A~~lG~AlQltNilRDv~eD~~ 179 (294)
T 4hd1_A 103 MEPFLRLIEANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCL---DDERARLSDATCTALQVANHMQDIDRDLA 179 (294)
T ss_dssp SHHHHHHHHHHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCC---SHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccchHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHhchhhhc
Confidence 4567789999999997 5799999999999999999999999999853 34456889999999999999999999999
Q ss_pred hCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhHHHHHHHHHH
Q 022527 102 EIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLAL 181 (295)
Q Consensus 102 e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~~~~~~fcaiP~~mAiatL~~ 181 (295)
+||+|||.|+|.+||++++|+..++.+++++.++.+++++|+.||.++..++..+|..+. ..+.++..++..+|..
T Consensus 180 ---~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r-~~~~~~~~~y~~il~~ 255 (294)
T 4hd1_A 180 ---LGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLA-RQLKLYRLGGEAILAA 255 (294)
T ss_dssp ---TTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHH-HHHHHHHHHHHHHHHH
T ss_pred ---cCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999998763 2344556666777877
Q ss_pred Hh-cCCCCCCCccccChHHHHHHHHHhc
Q 022527 182 CY-NNIEVFRGVVKMRRGLTAKVIDRTN 208 (295)
Q Consensus 182 ~~-~n~~Vf~~~vki~k~~~~~l~~ra~ 208 (295)
+. ++++||++|+++++.++.|++|++-
T Consensus 256 i~~~~~~~~~~R~~vs~~~Kl~l~~~al 283 (294)
T 4hd1_A 256 IRRQGYNPFAGRPVVSGKQKLRIALSVL 283 (294)
T ss_dssp HHTTTTCCC-------------------
T ss_pred HHhCCCCCCCCCCccCHHHHHHHHHHHH
Confidence 76 6789999999999999999999863
No 4
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=95.12 E-value=0.21 Score=46.42 Aligned_cols=130 Identities=10% Similarity=0.060 Sum_probs=79.3
Q ss_pred hhhHHHHHH-----HHHHHHHHHhhccc---cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCC-CCC----ChhHHHHHH
Q 022527 18 YQDAIEDIT-----KRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGT-EDL----APDSLSNSM 83 (295)
Q Consensus 18 ~~~~i~di~-----~~m~~GMa~dl~~~---~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~-~~~----~~~~~A~sl 83 (295)
.-+++..+. ..|..|...|+... -.|.++|..-..+=.|......+++ .. +|. .+. ....++.++
T Consensus 144 ~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~l 222 (313)
T 3lom_A 144 VVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHI 222 (313)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHH
Confidence 345555554 36788988888632 5689999776655555555555555 32 221 121 233788999
Q ss_pred HHHHHHHHHHhchHhhhhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 022527 84 GLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 84 G~aLQltNILRD~~ED~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~~ 162 (295)
|+|+|+.+=+-|+--|-.+ ++|- .-+|+.+++.+=...-.+..-...+.++.++|...+..+|+.
T Consensus 223 GlaFQI~DDilD~~gd~~~------------~GK~--~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 287 (313)
T 3lom_A 223 GLVFQMQDDYLDLYAPTQI------------LGKG--RSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSK 287 (313)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGG
T ss_pred HHHHHHHHHHHhccCCHHh------------hCCC--CcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999988887655442 2331 114666666666666667777788889999999988888764
No 5
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=94.91 E-value=1.4 Score=40.42 Aligned_cols=143 Identities=13% Similarity=0.054 Sum_probs=87.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcc--c--cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCCChhHHHHHHHHHHHHHH
Q 022527 17 GYQDAIEDITKRMGAGMAKFICK--E--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTN 91 (295)
Q Consensus 17 ~~~~~i~di~~~m~~GMa~dl~~--~--~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~slG~aLQltN 91 (295)
...+++.+.+.+|..|...|+.. . ..|+++|..-+++=.|......+++-.. ++ .+.....++.++|.|+|+.+
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~~l~~~g~~lG~aFQi~D 189 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKEDLKPLLNTLGLFFQIRD 189 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHHHHHH
Confidence 44566777888999999999963 2 4688998777766555555555555322 22 12345689999999999998
Q ss_pred HHhchH-----------hhhhhCCCCCccccHHHHHhccCChhhh---h-cccCCHHHHH-H---------HHHHHHHHH
Q 022527 92 IIRDYL-----------EDINEIPKCRMFWPREIWSKYVNKLEDL---K-YEENSDKAVQ-C---------LNDMVTNAL 146 (295)
Q Consensus 92 ILRD~~-----------ED~~e~~~GR~ylP~e~l~k~g~~~~dl---~-~~~~~~~~~~-~---------l~~lv~~A~ 146 (295)
=+-|+. .|+. .|.+-||.=..-+...+...+ . .+..++.... + +..-...+.
T Consensus 190 D~ld~~~~~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~ 266 (301)
T 2q80_A 190 DYANLHSKEYSENKSFCEDLT---EGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLK 266 (301)
T ss_dssp HHHHHHCC------CTTHHHH---HTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHhhhcCChhhhCCCccchhh---cCCcHHHHHHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 888763 6787 488889874433332111111 1 1222333222 2 223345566
Q ss_pred HHHHHHHHHHHhchhhh
Q 022527 147 MHVEDCLKYMSALRDHA 163 (295)
Q Consensus 147 ~hl~~a~~yl~~l~~~~ 163 (295)
.+..+|+..+..+|...
T Consensus 267 ~~~~~A~~~L~~l~~~~ 283 (301)
T 2q80_A 267 ELEAKAYKQIDARGGNP 283 (301)
T ss_dssp HHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHcCCCCH
Confidence 77777777777776543
No 6
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=94.81 E-value=0.11 Score=49.21 Aligned_cols=147 Identities=13% Similarity=0.114 Sum_probs=89.5
Q ss_pred ccChhhhhHHHHHHHHHHHHHHHhhccc--cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHH
Q 022527 13 ELGKGYQDAIEDITKRMGAGMAKFICKE--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLF 86 (295)
Q Consensus 13 ~L~~~~~~~i~di~~~m~~GMa~dl~~~--~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~a 86 (295)
++++..-+++.+.+.+|..|...|+... ..|+++|..-.++=.|......+++-.. +|.+. .....++.++|+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~a 235 (360)
T 3lmd_A 156 QLGTDTVAHFAETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMI 235 (360)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3455666778888889999999999642 3677777655555555555555544321 22111 1233778999999
Q ss_pred HHHHHHHhchH-----------hhhhhCCCCCccccHHHHHhccCCh--h---hhhc-ccCCHH-HHH---------HHH
Q 022527 87 LQKTNIIRDYL-----------EDINEIPKCRMFWPREIWSKYVNKL--E---DLKY-EENSDK-AVQ---------CLN 139 (295)
Q Consensus 87 LQltNILRD~~-----------ED~~e~~~GR~ylP~e~l~k~g~~~--~---dl~~-~~~~~~-~~~---------~l~ 139 (295)
+|+.+=+-|+. .|+. .|.+-||.=..-+.. ++ + ++.. +..++. ... .+.
T Consensus 236 FQI~DDilD~~~d~~~~GK~~g~Dl~---egK~Tlp~l~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~ 311 (360)
T 3lmd_A 236 FQIVDDIIDIFSETHESGKTPGTDLR---EGVFTLPVLYALRED-TPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQ 311 (360)
T ss_dssp HHHHHHHHHHHC--------CCHHHH---HTCCCHHHHHHHHCC-SHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHHccCChhhhCCCchhHHh---cCCchHHHHHHHHcC-CchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHH
Confidence 99999888873 6777 488889875433331 11 1 1111 112222 222 134
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhh
Q 022527 140 DMVTNALMHVEDCLKYMSALRDHA 163 (295)
Q Consensus 140 ~lv~~A~~hl~~a~~yl~~l~~~~ 163 (295)
.-...+..+..+|+..+..+|+..
T Consensus 312 ~a~~~a~~~~~~A~~~L~~lp~~~ 335 (360)
T 3lmd_A 312 AALDEVYRYMDIANAELDRLPDST 335 (360)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcH
Confidence 445567778888888888887643
No 7
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=94.81 E-value=0.45 Score=44.17 Aligned_cols=149 Identities=9% Similarity=0.061 Sum_probs=89.6
Q ss_pred HcccChhhhhHHHHHHHHHHHHHHHhhccc---cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCCChhHHHHHHHHH
Q 022527 11 FLELGKGYQDAIEDITKRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLF 86 (295)
Q Consensus 11 ~~~L~~~~~~~i~di~~~m~~GMa~dl~~~---~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~slG~a 86 (295)
+.++++..-+++.+.+..|..|...|+... -.|.++|..-+.+=.|......+++-.. +|.+......++.++|+|
T Consensus 116 l~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~a 195 (315)
T 3tc1_A 116 LSKMGELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDAKIYADFGLNFGMA 195 (315)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 334455566777888889999999998632 4688888665555555555555554322 222111233788999999
Q ss_pred HHHHHHHhch-----------HhhhhhCCCCCccccHHHHHhccCChh------hhhcccCCHHHHHH---------HHH
Q 022527 87 LQKTNIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE------DLKYEENSDKAVQC---------LND 140 (295)
Q Consensus 87 LQltNILRD~-----------~ED~~e~~~GR~ylP~e~l~k~g~~~~------dl~~~~~~~~~~~~---------l~~ 140 (295)
+|+.+=+-|+ +.|+. .|.+-||.=..-+.. +++ ++......+....+ +..
T Consensus 196 FQI~DD~ld~~~d~~~~GK~~g~Dl~---egK~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~ 271 (315)
T 3tc1_A 196 FQIIDDLLDITQDAKTLGKPNFSDFK---EGKTTLPYLLLYEKL-NQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEE 271 (315)
T ss_dssp HHHHHHHHTTSCCTTCCCCCCCCTGG---GTCCCHHHHHHHTTS-CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHhcccCCHHHhCCChhhHHH---cCChhHHHHHHHHhC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHH
Confidence 9999988887 56888 589999974333332 221 12222211222211 233
Q ss_pred HHHHHHHHHHHHHHHHHhchhhh
Q 022527 141 MVTNALMHVEDCLKYMSALRDHA 163 (295)
Q Consensus 141 lv~~A~~hl~~a~~yl~~l~~~~ 163 (295)
-...+..+..+|+..+..+|+..
T Consensus 272 ~~~~~~~~~~~A~~~L~~lp~s~ 294 (315)
T 3tc1_A 272 TLKTAQVYSKKALEAIKGENNLI 294 (315)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcH
Confidence 33446677777777777776543
No 8
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=94.57 E-value=0.35 Score=45.18 Aligned_cols=145 Identities=10% Similarity=0.073 Sum_probs=89.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhccc---cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHH
Q 022527 16 KGYQDAIEDITKRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQ 88 (295)
Q Consensus 16 ~~~~~~i~di~~~m~~GMa~dl~~~---~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQ 88 (295)
+..-+++.+.+..|..|...|+... -.|.++|..-.++=.|......+++-.. +|.+. .....++.++|+|+|
T Consensus 132 ~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQ 211 (334)
T 3rmg_A 132 YEIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQ 211 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445677888889999999999642 4688888776666666665555554321 22111 123378899999999
Q ss_pred HHHHHhchH----------hhhhhCCCCCccccHHHHHhccCCh--hhh---h-cccCCHHHHH----------HHHHHH
Q 022527 89 KTNIIRDYL----------EDINEIPKCRMFWPREIWSKYVNKL--EDL---K-YEENSDKAVQ----------CLNDMV 142 (295)
Q Consensus 89 ltNILRD~~----------ED~~e~~~GR~ylP~e~l~k~g~~~--~dl---~-~~~~~~~~~~----------~l~~lv 142 (295)
+.+=+-|+. .|+. .|.+-||.=..-+..... +.+ . .+..++.-.. .+..-.
T Consensus 212 i~DD~ld~~~~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~ 288 (334)
T 3rmg_A 212 IKDDIFDYFDSKKIGKPTGNDML---EGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYAC 288 (334)
T ss_dssp HHHHHHTTSCC------CCHHHH---TTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHhccCCChhhcCCCchhhhh---cCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHH
Confidence 999888873 7888 589999975433332211 111 1 1222222111 233344
Q ss_pred HHHHHHHHHHHHHHHhchhhh
Q 022527 143 TNALMHVEDCLKYMSALRDHA 163 (295)
Q Consensus 143 ~~A~~hl~~a~~yl~~l~~~~ 163 (295)
..+..+..+|...+..+|+..
T Consensus 289 ~~~~~~~~~A~~~L~~lp~~~ 309 (334)
T 3rmg_A 289 RTIEQYKKKAFDLLAALPDSN 309 (334)
T ss_dssp HHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHHHHHHHhCCCcH
Confidence 556778888888888887543
No 9
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=94.38 E-value=0.43 Score=43.94 Aligned_cols=122 Identities=11% Similarity=0.062 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhcc--ccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 022527 27 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 100 (295)
Q Consensus 27 ~~m~~GMa~dl~~--~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQltNILRD~~ED~ 100 (295)
..|..|...|+.. ...|.++|..-..+=.|......+++-.. +|.+. .....++.++|+|+|+.+=+-|+.-|-
T Consensus 148 ~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~ 227 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE 227 (301)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 5688999999863 35688888877776666666555554321 12111 123378899999999999888887665
Q ss_pred hhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 022527 101 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 101 ~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~~ 162 (295)
.+ .| |- .-+|+.+++.+-.....+..-...+.++.++|+..+..+|+.
T Consensus 228 ~~--~G----------K~--~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 275 (301)
T 1rtr_A 228 AK--LG----------KK--VGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQ 275 (301)
T ss_dssp CC---------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HH--hC----------CC--cchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 52 22 21 115777777776666677777888999999999999998743
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=94.29 E-value=0.25 Score=46.65 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHHHhhccc---------------cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHH
Q 022527 19 QDAIEDITKRMGAGMAKFICKE---------------VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSL 79 (295)
Q Consensus 19 ~~~i~di~~~m~~GMa~dl~~~---------------~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~ 79 (295)
-+++.+.+..|..|...|+... -.|.++|..-+.+=.|....+.+++-.. +|.+. .....+
T Consensus 134 ~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~ 213 (358)
T 4dhd_A 134 AKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNF 213 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4567777789999999998643 3488888766666555555555544322 22111 122378
Q ss_pred HHHHHHHHHHHHHHhch-----------HhhhhhCCCCCc-cccHHHHHhccCChh------hhh-cccCCHH-HHHH--
Q 022527 80 SNSMGLFLQKTNIIRDY-----------LEDINEIPKCRM-FWPREIWSKYVNKLE------DLK-YEENSDK-AVQC-- 137 (295)
Q Consensus 80 A~slG~aLQltNILRD~-----------~ED~~e~~~GR~-ylP~e~l~k~g~~~~------dl~-~~~~~~~-~~~~-- 137 (295)
+.++|+|+|+.+=+-|+ +.|+. .|.+ -||.=..-+.. +++ ++. ++..++. ...+
T Consensus 214 g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~---egK~~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~~~i~~ 289 (358)
T 4dhd_A 214 GMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIK---EHKRGNAVVAVALSHL-GEGERRRLLEILAREVVEEADVREAVA 289 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------CTTHHHH---TTBSCSHHHHHHHHHS-CHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCCchhhHh---cCChhhHHHHHHHHhC-ChhhHHHHHHHHcCCCCCHHHHHHHHH
Confidence 89999999999887776 46888 5888 88874333321 111 111 1211221 1111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHhchhh
Q 022527 138 -------LNDMVTNALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 138 -------l~~lv~~A~~hl~~a~~yl~~l~~~ 162 (295)
+..-...+..+.++|...+..+|+.
T Consensus 290 li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~ 321 (358)
T 4dhd_A 290 LLDSVGAREEALRLAARYREEAERHLAKIPNN 321 (358)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 2223556777888888888888754
No 11
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=94.29 E-value=0.82 Score=41.75 Aligned_cols=129 Identities=11% Similarity=-0.007 Sum_probs=82.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcc--c--cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCCChhHHHHHHHHHHHHHH
Q 022527 17 GYQDAIEDITKRMGAGMAKFICK--E--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTN 91 (295)
Q Consensus 17 ~~~~~i~di~~~m~~GMa~dl~~--~--~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~slG~aLQltN 91 (295)
..-+++.+.+..|..|...|+.. . -.|.++|..-..+=.|......+++-.. +|.+......++.++|+|+|+.+
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~D 213 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYD 213 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Confidence 44566677778999999999963 2 5689999887777666666665554321 12111234488999999999999
Q ss_pred HHhchHhhhhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022527 92 IIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 161 (295)
Q Consensus 92 ILRD~~ED~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~ 161 (295)
=+-|+.-|-.+ .|.- .| +|+. +.+-.....+..-...+.++.++|+..+..+|.
T Consensus 214 D~lD~~~d~~~--~GK~---------~g---~Dl~--K~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 267 (284)
T 2ftz_A 214 DLXDILGSFEK--VGKD---------LG---KDTE--XVTLVXXVGIQXAREMADXYYEEVLXGIESEGL 267 (284)
T ss_dssp HHHHHHHHCCC--C-------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhcCCHHh--hCCC---------cc---hhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 88888777652 2321 11 2333 334444445566677788888888888888763
No 12
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=94.12 E-value=0.34 Score=45.41 Aligned_cols=143 Identities=12% Similarity=0.097 Sum_probs=88.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccc---cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHH
Q 022527 17 GYQDAIEDITKRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 89 (295)
Q Consensus 17 ~~~~~i~di~~~m~~GMa~dl~~~---~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQl 89 (295)
..-+++.+.+.+|..|...|+... -.|.++|..-..+=.|......+++-.. +|.+. .....++.++|+|+|+
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI 218 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQI 218 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445667777889999999998632 4688888766665555555555554322 22111 1233788999999999
Q ss_pred HHHHhch-----------HhhhhhCCCCCccccHHHHHhccCChh------hhhc-cc-CCHHHHHH---------HHHH
Q 022527 90 TNIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE------DLKY-EE-NSDKAVQC---------LNDM 141 (295)
Q Consensus 90 tNILRD~-----------~ED~~e~~~GR~ylP~e~l~k~g~~~~------dl~~-~~-~~~~~~~~---------l~~l 141 (295)
.+=+-|+ +.|+. .|.+-||.=..-+.. +.+ ++.. +. ..+....+ +..-
T Consensus 219 ~DD~ld~~~d~~~~GK~~g~Dl~---egK~Tlp~i~al~~~-~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a 294 (341)
T 3mzv_A 219 VDDLLDYGGKSAEIGKNTGDDFR---ERKLTMPVIKAVALA-DEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEAT 294 (341)
T ss_dssp HHHHHHC----------CCHHHH---TTCCCHHHHHHHHTC-CHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHhccCChhhcCCCCCcccc---cCchhHHHHHHHHhC-CHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHH
Confidence 9988887 46788 589999974333322 111 1111 11 12222222 3444
Q ss_pred HHHHHHHHHHHHHHHHhchhhh
Q 022527 142 VTNALMHVEDCLKYMSALRDHA 163 (295)
Q Consensus 142 v~~A~~hl~~a~~yl~~l~~~~ 163 (295)
...+..+..+|+..+..+|+..
T Consensus 295 ~~~a~~~~~~A~~~L~~lp~~~ 316 (341)
T 3mzv_A 295 RLAAIGWTDTARKALAKLPDHP 316 (341)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHHHHHHHHhCCCCH
Confidence 5667788888888888887643
No 13
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=94.11 E-value=0.77 Score=42.68 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=77.7
Q ss_pred hHHHHHHH-----HHHHHHHHhhcc--ccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCC----ChhHHHHHHHHHH
Q 022527 20 DAIEDITK-----RMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL----APDSLSNSMGLFL 87 (295)
Q Consensus 20 ~~i~di~~-----~m~~GMa~dl~~--~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~~----~~~~~A~slG~aL 87 (295)
+++..+.+ .|..|...|+.. ...|.++|..-..+=.|......+++-.. +|..+. ....++.++|+|+
T Consensus 139 ~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAF 218 (317)
T 4f62_A 139 KLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAF 218 (317)
T ss_dssp HHHHHHHHHHSTTTHHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 45555543 478898888863 34688888776654444445555544322 221111 2337889999999
Q ss_pred HHHHHHhchHhhhhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 022527 88 QKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 88 QltNILRD~~ED~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~~ 162 (295)
|+.+=+-|+.-|-. .++|- .-+|+.+++.+=...-.+..-...|.++.++|...+..+|+.
T Consensus 219 QI~DDiLD~~gd~~------------~~GK~--~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 279 (317)
T 4f62_A 219 QVQDDIIDLTSDTE------------TLGKT--QFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGDK 279 (317)
T ss_dssp HHHHHHHHTC------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHhccCChH------------hhCCC--cchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 99988888754443 23331 124677777776666678888888999999999999988763
No 14
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=93.96 E-value=0.87 Score=42.01 Aligned_cols=130 Identities=16% Similarity=0.086 Sum_probs=80.9
Q ss_pred hhHHHHHHH-----HHHHHHHHhhcc--ccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCC----ChhHHHHHHHHH
Q 022527 19 QDAIEDITK-----RMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL----APDSLSNSMGLF 86 (295)
Q Consensus 19 ~~~i~di~~-----~m~~GMa~dl~~--~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~~----~~~~~A~slG~a 86 (295)
.+++..+.+ .|..|...|+.. ...|.++|..-+.+=.|......+++-.. +|..+. ....++.++|+|
T Consensus 139 ~~~~~~l~~a~~~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGla 218 (304)
T 3lsn_A 139 LRMVTTLAQAAGPAGMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLA 218 (304)
T ss_dssp HHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHchhhHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 345555543 388899888863 34688888776655555555555544322 222121 233788999999
Q ss_pred HHHHHHHhchHhhhhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 022527 87 LQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 87 LQltNILRD~~ED~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~~ 162 (295)
+|+.+=+-|+.-|-.+ ++|- .-+|+.+++.+=...-.+..--..+.++.++|...+..+|+.
T Consensus 219 FQI~DDilD~~~~~~~------------~GK~--~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 280 (304)
T 3lsn_A 219 FQVQDDILDVESDTAT------------LGKR--QGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA 280 (304)
T ss_dssp HHHHHHHHHHHHHHHH------------C--------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHhccCChHH------------hCCC--cccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 9999988888766552 2221 124777777777777777888888999999999999988763
No 15
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=93.89 E-value=0.43 Score=43.99 Aligned_cols=122 Identities=17% Similarity=0.152 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhcc--ccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cC---CCC-CChhHHHHHHHHHHHHHHHHhchHhh
Q 022527 27 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG---TED-LAPDSLSNSMGLFLQKTNIIRDYLED 99 (295)
Q Consensus 27 ~~m~~GMa~dl~~--~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~---~~~-~~~~~~A~slG~aLQltNILRD~~ED 99 (295)
..|..|...|+.. ...|.++|..-..+=.|......+++-.. +| .+. .....++.++|+|+|+.+=+-|+.-|
T Consensus 158 ~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~ 237 (302)
T 3p8r_A 158 QGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISD 237 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3678898888863 45688888776654444445555444321 11 111 12347889999999999877777554
Q ss_pred hhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 022527 100 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 100 ~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~~ 162 (295)
-. .++|- .-+|+.+++.+=.....+..-...|.++.++|...+..+|..
T Consensus 238 ~~------------~~GK~--~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 286 (302)
T 3p8r_A 238 TE------------TLGKP--QGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN 286 (302)
T ss_dssp -----------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HH------------HhCCC--cchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 43 23331 125777777777777788888889999999999999998764
No 16
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=93.84 E-value=0.16 Score=46.94 Aligned_cols=122 Identities=14% Similarity=0.010 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhcc----ccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCCChhHHHHHHHHHHHHHHHHhchHhhhh
Q 022527 27 KRMGAGMAKFICK----EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDIN 101 (295)
Q Consensus 27 ~~m~~GMa~dl~~----~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~slG~aLQltNILRD~~ED~~ 101 (295)
..|..|...|+.. .-.|.++|..-..+=.|......+++-.. +|.+......++.++|+|+|+.+=+-|+.-|-.
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~ 226 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEE 226 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 5688898888863 35688898776655555555555444221 121112344889999999999886666644433
Q ss_pred hCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 022527 102 EIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 102 e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~~ 162 (295)
.++|- .-+|+.+++.+=...-.+..-...+.++..+|...+..+|..
T Consensus 227 ------------~~GK~--~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~ 273 (297)
T 3m0g_A 227 ------------AAGKR--LGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEA 273 (297)
T ss_dssp ----------------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGGG
T ss_pred ------------HhCCC--ccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 23331 114666666665555556666677888888888888888764
No 17
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=93.42 E-value=1.5 Score=40.62 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=65.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccc---cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHH
Q 022527 17 GYQDAIEDITKRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 89 (295)
Q Consensus 17 ~~~~~i~di~~~m~~GMa~dl~~~---~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQl 89 (295)
..-+++.+.+.+|..|...|+... -.|.++|..-.++=.|......+++-.. +|.+. ....+++.++|.|+|+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi 209 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQI 209 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345667777889999999999632 4688888776666666666666555322 22111 1133788999999999
Q ss_pred HHHHhch-----------HhhhhhCCCCCccccHH
Q 022527 90 TNIIRDY-----------LEDINEIPKCRMFWPRE 113 (295)
Q Consensus 90 tNILRD~-----------~ED~~e~~~GR~ylP~e 113 (295)
.|=+-|+ +.|+. .|.+-||.=
T Consensus 210 ~DD~ld~~~~~~~~GK~~g~Dl~---~gk~T~p~i 241 (325)
T 3aqb_B 210 IDDILDYTSDEATLGKPVGSDIR---NGHITYPLM 241 (325)
T ss_dssp HHHHHHHHSCHHHHSSCTTHHHH---TTCCCHHHH
T ss_pred HHHHHhccCChhhcCCccchHhh---CCCccHHHH
Confidence 9888876 46777 588999874
No 18
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=93.39 E-value=0.62 Score=42.82 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=62.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccc--cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCCChhHHHHHHHHHHHHHHHH
Q 022527 17 GYQDAIEDITKRMGAGMAKFICKE--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNII 93 (295)
Q Consensus 17 ~~~~~i~di~~~m~~GMa~dl~~~--~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~slG~aLQltNIL 93 (295)
..-+++.+.+..|..|...|+... ..|+++|..-+++=.|......+++-.. +|.+.....+++.++|+|+|+.+=+
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQi~DD~ 206 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDI 206 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778889999999999632 3788888766666555555555544321 2222222348899999999999988
Q ss_pred hchHh----------hhhhCCCCCccccH
Q 022527 94 RDYLE----------DINEIPKCRMFWPR 112 (295)
Q Consensus 94 RD~~E----------D~~e~~~GR~ylP~ 112 (295)
-|+.- |+. .|.+-||.
T Consensus 207 lD~~~d~~~GK~~g~Dl~---egK~T~p~ 232 (299)
T 1v4e_A 207 MDFAGMEKIGKDGFLDLK---NGVASFPL 232 (299)
T ss_dssp HHHTTCCSCCTTSSCCCT---TTTCCHHH
T ss_pred HHccCccccCCCcchHhh---CCCchHHH
Confidence 88754 455 46777776
No 19
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=93.33 E-value=1.5 Score=40.23 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=77.2
Q ss_pred cChhhhhHHHHHHHHHHHHHHHhhccc--cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHH
Q 022527 14 LGKGYQDAIEDITKRMGAGMAKFICKE--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFL 87 (295)
Q Consensus 14 L~~~~~~~i~di~~~m~~GMa~dl~~~--~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aL 87 (295)
+++..-+++.+.+..|..|...|+... ..|.++|..-.++=.|......+++-.. +|.+. .....++.++|+|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaF 203 (295)
T 3ipi_A 124 YGEKVIQDFGKAGMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAY 203 (295)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 344445566677778999999998632 3566777655555555555555554321 22111 12337889999999
Q ss_pred HHHHHHhchHhh-----hhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 022527 88 QKTNIIRDYLED-----INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 88 QltNILRD~~ED-----~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~~ 162 (295)
|+.+=+-|+.-| .. .|..-||.=.-.+ ..+ ...+..-...|..+.++|...+..+|+.
T Consensus 204 QI~DDilD~~~~~~gkd~~---~gk~Tlp~l~al~------------~~~--~~~le~a~~~a~~~~~~A~~~L~~lp~~ 266 (295)
T 3ipi_A 204 QIVDDILEFLEVVEGKESK---FTSETLPHIYMKS------------TSK--EEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp HHHHHHHHHHHHHHC----------CCHHHHHTTT------------SCH--HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHhcCCccCCCcc---cCcccHHHHHHHh------------cCc--hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999988888654 33 3555566421111 111 1235666677888888999888888754
No 20
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=93.24 E-value=0.53 Score=43.91 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=79.8
Q ss_pred hHHHHHH-----HHHHHHHHHhhcc--ccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCC----ChhHHHHHHHHHH
Q 022527 20 DAIEDIT-----KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL----APDSLSNSMGLFL 87 (295)
Q Consensus 20 ~~i~di~-----~~m~~GMa~dl~~--~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~~----~~~~~A~slG~aL 87 (295)
+++..+. ..|..|...|+.. .-.|.++|..-..+=.|......+++-.. +|..+. ....++.++|+|+
T Consensus 146 ~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAF 225 (324)
T 3ts7_A 146 AMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAF 225 (324)
T ss_dssp HHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555554 4588999999863 35688998877655555555665554322 220111 2337889999999
Q ss_pred HHHHHHhchHhhhhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 022527 88 QKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 88 QltNILRD~~ED~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~~ 162 (295)
|+.+=+-|+.-|-. .++|- .-+|+.+++.+=...-.+..-...|.++.++|...+..+|+.
T Consensus 226 QI~DDiLD~~~d~~------------~~GK~--~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 286 (324)
T 3ts7_A 226 QIQDDILDEESDTQ------------TLGKT--RGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGPE 286 (324)
T ss_dssp HHHHHHHHHTCC-----------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred HHHHHHHhccCCHH------------HhCCC--ccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99988888755544 23331 114677777776666677778888999999999999888764
No 21
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=93.15 E-value=1.2 Score=41.97 Aligned_cols=140 Identities=12% Similarity=0.041 Sum_probs=85.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhccc---cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHH
Q 022527 18 YQDAIEDITKRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKT 90 (295)
Q Consensus 18 ~~~~i~di~~~m~~GMa~dl~~~---~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQlt 90 (295)
.-+++.+.+.+|..|...|+... -.|.++|..=..+=.|......+++-.. +|.+. .....++.++|+|+|+.
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~ 223 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAV 223 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788889999999998632 4588888766655555555555554322 22111 12237889999999999
Q ss_pred HHHhch-----------HhhhhhCCCCCccccHHHHHhccCChh-----hhhcc--------cCCH-HHHH---H-----
Q 022527 91 NIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE-----DLKYE--------ENSD-KAVQ---C----- 137 (295)
Q Consensus 91 NILRD~-----------~ED~~e~~~GR~ylP~e~l~k~g~~~~-----dl~~~--------~~~~-~~~~---~----- 137 (295)
+=+-|+ +.|+. .|.+-||.=..-+.+ +++ ++... ..++ .... +
T Consensus 224 DD~ld~~gd~~~~GK~~g~Dl~---egK~Tlpvi~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g 299 (352)
T 3nf2_A 224 DDLLGIWGDPDATGKQTWSDLR---QRKKSLPVVAALAAG-GAASERLGEILTADAKASDFANFSEEEFAARAALIEEAG 299 (352)
T ss_dssp HHHHHHHCCHHHHSSCTTHHHH---TTCCCHHHHHHHHHC-SHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHhccCChhhhCCCcCcccc---cCCccHHHHHHHHhC-ChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCC
Confidence 988876 47888 589999874333322 111 11111 1122 2211 1
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhchh
Q 022527 138 -LNDMVTNALMHVEDCLKYMSALRD 161 (295)
Q Consensus 138 -l~~lv~~A~~hl~~a~~yl~~l~~ 161 (295)
+..-...+..+..+|+..+..+|.
T Consensus 300 ~~~~a~~~a~~~~~~A~~~L~~lp~ 324 (352)
T 3nf2_A 300 GREWTADEARRQHTIAIEALDAVDM 324 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333445567788888888888775
No 22
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=93.06 E-value=0.64 Score=42.91 Aligned_cols=121 Identities=9% Similarity=-0.044 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhcc--ccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 022527 27 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 100 (295)
Q Consensus 27 ~~m~~GMa~dl~~--~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQltNILRD~~ED~ 100 (295)
..|..|...|+.. .-.|.++|..-..+=.|......+++-.. +|... .....++.++|+|+|+.+=+-|+.-|-
T Consensus 156 ~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~ 235 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTE 235 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 4688898888863 34588888776544444445555544221 12111 123378899999999998777775544
Q ss_pred hhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022527 101 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 161 (295)
Q Consensus 101 ~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~ 161 (295)
. .++|- .-+|+.+++.+=.....+..--..+.++..+|...+..+|+
T Consensus 236 ~------------~~GK~--~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~ 282 (302)
T 3p8l_A 236 A------------DLGKK--VGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIKA 282 (302)
T ss_dssp -----------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H------------HhCCC--hhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 22331 12577777777777777778888888999999999888864
No 23
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=93.02 E-value=0.91 Score=42.33 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhccc---cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhh
Q 022527 27 KRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLED 99 (295)
Q Consensus 27 ~~m~~GMa~dl~~~---~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQltNILRD~~ED 99 (295)
..|..|...|+... -.|.++|..-..+=.|......+++-.. +|.+. .....++.++|+|+|+.+=+-|+.-|
T Consensus 180 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd 259 (324)
T 3uca_A 180 DGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGN 259 (324)
T ss_dssp TTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 35888999998643 4588888766544444445555444221 12111 12337888999999999877777444
Q ss_pred hhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 022527 100 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 100 ~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~~ 162 (295)
-. .++|- .-+|+.+++.+=.....+..-...|.++.++|...+..+|..
T Consensus 260 ~~------------~~GK~--~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 308 (324)
T 3uca_A 260 AK------------DLGKN--VHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKGN 308 (324)
T ss_dssp -------------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HH------------HhCCC--cchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 33 23331 114666666666666667777788889999999999998764
No 24
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=92.91 E-value=1.8 Score=40.19 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=65.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcc-----ccCCHHHHHHHHHhhhhHH-HHHHHHhhcc-cCCCC-CChhHHHHHHHHHHH
Q 022527 17 GYQDAIEDITKRMGAGMAKFICK-----EVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTED-LAPDSLSNSMGLFLQ 88 (295)
Q Consensus 17 ~~~~~i~di~~~m~~GMa~dl~~-----~~~T~~dLd~Yc~~VAG~V-G~ll~~l~~~-~~~~~-~~~~~~A~slG~aLQ 88 (295)
..-+++.+.+.+|..|...|+.. .-.|+++|..-+++=.|.. ..+.+++-.. +|.+. .....++.++|.|+|
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~l~~~g~~lG~aFQ 209 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQ 209 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44566778888999999999865 2458888877666655555 5555544321 12111 114578999999999
Q ss_pred HHHHHhch----------HhhhhhCCCCCccccHH
Q 022527 89 KTNIIRDY----------LEDINEIPKCRMFWPRE 113 (295)
Q Consensus 89 ltNILRD~----------~ED~~e~~~GR~ylP~e 113 (295)
+.|=+-|+ +.|+. .|.+-||.=
T Consensus 210 i~DD~ld~~~d~~~GK~~g~Dl~---egK~T~p~i 241 (330)
T 1wmw_A 210 IVDDVLNLEGGEAYGKERAGDLY---EGKRTLILL 241 (330)
T ss_dssp HHHHHHHHSCSCCCSSSTTHHHH---HTCCCHHHH
T ss_pred HHHccCcccCCcccCCCcCchhh---CCCCCHHHH
Confidence 99988886 57888 489999974
No 25
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=92.90 E-value=1.7 Score=40.79 Aligned_cols=93 Identities=11% Similarity=0.110 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhccc-------------------cCCHHHHHHHHHhhhhHH-HHHHHHh---hcc-cCCCC
Q 022527 18 YQDAIEDITKRMGAGMAKFICKE-------------------VESIDDYDEYCYYVAGLV-GLGLSKL---FYA-SGTED 73 (295)
Q Consensus 18 ~~~~i~di~~~m~~GMa~dl~~~-------------------~~T~~dLd~Yc~~VAG~V-G~ll~~l---~~~-~~~~~ 73 (295)
.-+++.+.+.+|..|...|+... -.|+++|..=+++=.|.. ....+++ ++. ...+.
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~ 231 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVE 231 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHH
Confidence 35677788889999999999643 247888866666544444 3333332 322 11111
Q ss_pred -CChhHHHHHHHHHHHHHHHHhchH----------hhhhhCCCCCccccHH
Q 022527 74 -LAPDSLSNSMGLFLQKTNIIRDYL----------EDINEIPKCRMFWPRE 113 (295)
Q Consensus 74 -~~~~~~A~slG~aLQltNILRD~~----------ED~~e~~~GR~ylP~e 113 (295)
.....++.++|+|+|+.+=+-|+. .|+. .|.+-||.=
T Consensus 232 ~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~---egK~T~p~l 279 (362)
T 1yhl_A 232 MNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIE---DAKCSWLAV 279 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT---TTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHh---cCCchHHHH
Confidence 123378899999999999888875 5777 589999874
No 26
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=92.73 E-value=0.57 Score=43.00 Aligned_cols=121 Identities=19% Similarity=0.139 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhccc--cCCHHHHHHHHHhhhhHHHHHHHHhhccc--CCCC---CChhHHHHHHHHHHHHHHHHhchHhh
Q 022527 27 KRMGAGMAKFICKE--VESIDDYDEYCYYVAGLVGLGLSKLFYAS--GTED---LAPDSLSNSMGLFLQKTNIIRDYLED 99 (295)
Q Consensus 27 ~~m~~GMa~dl~~~--~~T~~dLd~Yc~~VAG~VG~ll~~l~~~~--~~~~---~~~~~~A~slG~aLQltNILRD~~ED 99 (295)
..|..|...|+... ..|.++|..-..+=.|......+++-..- |.+. .....++.++|+|+|+.+=+-|+.-|
T Consensus 152 ~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~ 231 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299)
T ss_dssp TTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 46889999998632 56888887776554444555555442211 1001 12337789999999999888887655
Q ss_pred hhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022527 100 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 161 (295)
Q Consensus 100 ~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~ 161 (295)
-.+ ++|- .-+|+.+++.+-.....+..-...+..+.++|+..+..+|.
T Consensus 232 ~~~------------~GK~--~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~ 279 (299)
T 1rqj_A 232 TAT------------LGKR--QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAE 279 (299)
T ss_dssp HHH------------HSSC--TTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH------------hCCC--hhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 442 2221 12566666666666666666777888888888888888865
No 27
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=92.67 E-value=0.53 Score=44.10 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhcc--ccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 022527 27 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 100 (295)
Q Consensus 27 ~~m~~GMa~dl~~--~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQltNILRD~~ED~ 100 (295)
..|..|...|+.. .-.|.++|..-.++=.|......+++-.. +|.+. .....++.++|+|+|+.+=+-|+.-|-
T Consensus 192 ~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 271 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADA 271 (335)
T ss_dssp TSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 5688999999863 35688888777766666555555544221 12111 123378899999999998888875443
Q ss_pred hhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022527 101 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 161 (295)
Q Consensus 101 ~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~ 161 (295)
.+ +.|- .-+|+.+++.+-.....+..-...+.++.++|+..+..+|.
T Consensus 272 ~~------------~GK~--~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~ 318 (335)
T 2h8o_A 272 AT------------MGKA--TGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE 318 (335)
T ss_dssp ----------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HH------------hCCC--cchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 31 2221 11355556555555555667777888888888888888764
No 28
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=92.63 E-value=1.6 Score=40.64 Aligned_cols=144 Identities=13% Similarity=0.022 Sum_probs=84.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhccc---cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHH
Q 022527 16 KGYQDAIEDITKRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQ 88 (295)
Q Consensus 16 ~~~~~~i~di~~~m~~GMa~dl~~~---~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQ 88 (295)
+..-+++.+.+..|..|...++... -.|.++|..-+.+=.|......+++-.. +|.+. .....++.++|+|+|
T Consensus 142 ~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQ 221 (334)
T 3pko_A 142 RSLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQ 221 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4555667778889999988888642 4578887665555555555555544322 22111 123377889999999
Q ss_pred HHHHHhch-----------HhhhhhCCCCCccccHHHHHhccC-Chhhhh--cccCCHHHHHH----------HHHHHHH
Q 022527 89 KTNIIRDY-----------LEDINEIPKCRMFWPREIWSKYVN-KLEDLK--YEENSDKAVQC----------LNDMVTN 144 (295)
Q Consensus 89 ltNILRD~-----------~ED~~e~~~GR~ylP~e~l~k~g~-~~~dl~--~~~~~~~~~~~----------l~~lv~~ 144 (295)
+.+=+-|+ +.|+. .|.+-||.=..-+... ...++. .+..++.-..- +..-...
T Consensus 222 i~DD~ld~~~~~~~~GK~~g~Dl~---egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~ 298 (334)
T 3pko_A 222 MLDDILDYAGDPKRTQKPVLEDLR---SGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQL 298 (334)
T ss_dssp HHHHHHHHCSCTTSCCHHHHHHHH---TTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhccCChhhcCCCCCCccc---cCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHH
Confidence 99877776 57888 5999999743222210 011111 11122221111 1233455
Q ss_pred HHHHHHHHHHHHHhchhh
Q 022527 145 ALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 145 A~~hl~~a~~yl~~l~~~ 162 (295)
+..+..+|...+..+|..
T Consensus 299 ~~~~~~~A~~~L~~lp~~ 316 (334)
T 3pko_A 299 AQDYTDRALTLIQQLPVG 316 (334)
T ss_dssp HHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 677778888888777754
No 29
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=92.38 E-value=4 Score=37.98 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=81.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccc---cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCC---ChhHHHHHHHHHHHH
Q 022527 17 GYQDAIEDITKRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQK 89 (295)
Q Consensus 17 ~~~~~i~di~~~m~~GMa~dl~~~---~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~slG~aLQl 89 (295)
..-+++.+.+.+|..|...|+... -.|+++|..=.++=.|......+++-.. +|.+.. ....++.++|.|+|+
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi 232 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQL 232 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 445677778889999999999642 3577777655444444444444443221 221111 123678999999999
Q ss_pred HHHHhchH-----------hhhhhCCCCCccccHHHHHhccCChhhhhccc--CCHH---HHH------HHHHHHHHHHH
Q 022527 90 TNIIRDYL-----------EDINEIPKCRMFWPREIWSKYVNKLEDLKYEE--NSDK---AVQ------CLNDMVTNALM 147 (295)
Q Consensus 90 tNILRD~~-----------ED~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~--~~~~---~~~------~l~~lv~~A~~ 147 (295)
.+=+-|+. .|+. .|.+-||.=..-+......++.... ..+. +.. .+......+..
T Consensus 233 ~DD~lD~~gd~~~~GK~~g~Dl~---egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~ 309 (348)
T 3apz_A 233 IDDILDFTGTSASLGKGSLSDIR---HGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAME 309 (348)
T ss_dssp HHHHHHHHTTTTCTTCSCCHHHH---TTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHhhccCChhhcCCcchhhHh---CCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 99888875 5677 5888888743222222222222111 1111 111 22333455566
Q ss_pred HHHHHHHHHHhchh
Q 022527 148 HVEDCLKYMSALRD 161 (295)
Q Consensus 148 hl~~a~~yl~~l~~ 161 (295)
+..+|...+..+|.
T Consensus 310 ~~~~A~~~L~~l~~ 323 (348)
T 3apz_A 310 HANLAAAAIGSLPE 323 (348)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHcCCC
Confidence 77777777777654
No 30
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=92.27 E-value=1.6 Score=40.39 Aligned_cols=120 Identities=15% Similarity=0.011 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhcc--ccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHhchHhhh
Q 022527 27 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDYLEDI 100 (295)
Q Consensus 27 ~~m~~GMa~dl~~--~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~slG~aLQltNILRD~~ED~ 100 (295)
..|..|...|+.. .-.|.++|..-..+=.|......+++-.. +|.+.. ....++.++|+|+|+.+=+-|+.-|-
T Consensus 155 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~ 234 (309)
T 3pde_A 155 SGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSP 234 (309)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 3588898888863 34588888776655555555555544221 121111 23378899999999998888876554
Q ss_pred hhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 022527 101 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 160 (295)
Q Consensus 101 ~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~ 160 (295)
. .+.|- .-+|+.+++.+=.....+..--..+.+++.+|...+..+|
T Consensus 235 ~------------~~GK~--~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~ 280 (309)
T 3pde_A 235 A------------EMGKA--TQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLP 280 (309)
T ss_dssp ------------------------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred H------------HhCCC--ccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 4 23331 1257777777777777778888888899999998888753
No 31
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=91.77 E-value=2.3 Score=39.85 Aligned_cols=144 Identities=13% Similarity=0.049 Sum_probs=83.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccc---cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHH
Q 022527 17 GYQDAIEDITKRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 89 (295)
Q Consensus 17 ~~~~~i~di~~~m~~GMa~dl~~~---~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQl 89 (295)
..-+++.+.+..|..|...|+... -.|.++|..-.++=.|......+++-.. +|.+. .....++.++|+|+|+
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi 230 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQL 230 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445677788889999999998642 4688888776666666666665554322 22111 1233788999999999
Q ss_pred HHHHhch-----------HhhhhhCCCCCccccHHHHHhccCChh-h----hhc-----ccCCHHHHHH------HHHHH
Q 022527 90 TNIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE-D----LKY-----EENSDKAVQC------LNDMV 142 (295)
Q Consensus 90 tNILRD~-----------~ED~~e~~~GR~ylP~e~l~k~g~~~~-d----l~~-----~~~~~~~~~~------l~~lv 142 (295)
.+=+-|+ +.|+. .|.+-||.=..-+.+...+ + +.. ++.-+.+... +..-.
T Consensus 231 ~DD~lD~~~d~~~~GK~~g~Dl~---egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~ 307 (345)
T 3oyr_A 231 ADDALDYGGATETLGKNAGDDFR---EGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATL 307 (345)
T ss_dssp HHHHTTC----------------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHhccCChhhcCCCccchhh---cCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHH
Confidence 9988886 46777 5888898743333321111 0 111 1111223332 34455
Q ss_pred HHHHHHHHHHHHHHHhchhhh
Q 022527 143 TNALMHVEDCLKYMSALRDHA 163 (295)
Q Consensus 143 ~~A~~hl~~a~~yl~~l~~~~ 163 (295)
..+..+.++|+..+..+|+..
T Consensus 308 ~~a~~~~~~A~~~L~~lp~~~ 328 (345)
T 3oyr_A 308 DLAADYADKAKAALAMFPAND 328 (345)
T ss_dssp HHHHHHHHHHHHTTTTSCSSH
T ss_pred HHHHHHHHHHHHHHHhCCCcH
Confidence 667778888888888887643
No 32
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=91.66 E-value=3.4 Score=39.04 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhccc----c----CCHHHHHHHHHhhhhHH-HHHHHHh---hcc-cCCCC-CChhHHHHHH
Q 022527 18 YQDAIEDITKRMGAGMAKFICKE----V----ESIDDYDEYCYYVAGLV-GLGLSKL---FYA-SGTED-LAPDSLSNSM 83 (295)
Q Consensus 18 ~~~~i~di~~~m~~GMa~dl~~~----~----~T~~dLd~Yc~~VAG~V-G~ll~~l---~~~-~~~~~-~~~~~~A~sl 83 (295)
.-+++.+.+.+|..|...|+... . .|+++|..-..+=.|.. ....+.+ ++. ...+. .....++.++
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~l 256 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEM 256 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 35667788889999999999632 1 58888877766655555 3333333 222 10011 1233788999
Q ss_pred HHHHHHHHHHhchH----------hhhhhCCCCCccccHH
Q 022527 84 GLFLQKTNIIRDYL----------EDINEIPKCRMFWPRE 113 (295)
Q Consensus 84 G~aLQltNILRD~~----------ED~~e~~~GR~ylP~e 113 (295)
|+|+|+.+=+-|+- .|+. .|.+-||.=
T Consensus 257 G~aFQI~DDiLD~~gd~~~~GK~g~Dl~---~gK~T~p~l 293 (374)
T 2qis_A 257 GEFFQIQDDYLDLFGDPSVTGKIGTDIQ---DNKCSWLVV 293 (374)
T ss_dssp HHHHHHHHHHHHHHSCHHHHCSCCCTTT---TTCCCHHHH
T ss_pred HHHHHHHHHHHHccCChhhcCCchhHHH---cCCccHHHH
Confidence 99999999888885 4677 589999874
No 33
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=91.59 E-value=4.4 Score=38.63 Aligned_cols=140 Identities=13% Similarity=0.062 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHHhhc-----------------------cc----cCCHHHHHHHHHhhhhHH-H---HHHHHhhc
Q 022527 19 QDAIEDITKRMGAGMAKFIC-----------------------KE----VESIDDYDEYCYYVAGLV-G---LGLSKLFY 67 (295)
Q Consensus 19 ~~~i~di~~~m~~GMa~dl~-----------------------~~----~~T~~dLd~Yc~~VAG~V-G---~ll~~l~~ 67 (295)
-+++.+.+..|..|...|+. .. -.|+++|..-+.+=.|.. . ..+..+++
T Consensus 180 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~la 259 (395)
T 2ihi_A 180 IATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLA 259 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHc
Confidence 46677788899999999991 11 357788765444433332 1 12222333
Q ss_pred ccCCCC--C-ChhHHHHHHHHHHHHHHHHhch----------HhhhhhCCCCCccccHHHHHhccCChhh---h---hcc
Q 022527 68 ASGTED--L-APDSLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPREIWSKYVNKLED---L---KYE 128 (295)
Q Consensus 68 ~~~~~~--~-~~~~~A~slG~aLQltNILRD~----------~ED~~e~~~GR~ylP~e~l~k~g~~~~d---l---~~~ 128 (295)
....+. . ....++.++|+|+|+.+=+-|+ +.|+. .|.+-||.=..-+. .++++ | ...
T Consensus 260 g~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~---egK~T~p~l~al~~-~~~~~~~~L~~~~~~ 335 (395)
T 2ihi_A 260 GIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ---NNKLTWPLIKTFEL-CSEPDKIKIVKNYGK 335 (395)
T ss_dssp TCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTT---TTCCCHHHHHHHHH-CCHHHHHHHHHHCC-
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhh---cCCchHHHHHHHHh-CCHHHHHHHHHHhCC
Confidence 221111 1 1237889999999999988887 56888 59998887433222 12221 1 111
Q ss_pred cCCHH---HHH------HHHHHHHHHHHHHHHHHHHHHhchhh
Q 022527 129 ENSDK---AVQ------CLNDMVTNALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 129 ~~~~~---~~~------~l~~lv~~A~~hl~~a~~yl~~l~~~ 162 (295)
...+. +.. .+......+..++.++...+..+|+.
T Consensus 336 ~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~ 378 (395)
T 2ihi_A 336 NNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHE 378 (395)
T ss_dssp CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCH
T ss_pred CCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 11111 111 23333445666677777777777653
No 34
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=91.19 E-value=2.6 Score=39.20 Aligned_cols=93 Identities=15% Similarity=0.083 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhcc--c----cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCC--CCChhHHHHHHHHHHH
Q 022527 18 YQDAIEDITKRMGAGMAKFICK--E----VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTE--DLAPDSLSNSMGLFLQ 88 (295)
Q Consensus 18 ~~~~i~di~~~m~~GMa~dl~~--~----~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~--~~~~~~~A~slG~aLQ 88 (295)
..+++.+.+.+|..|...|+.. . ..|+++|..-+++=.|....+.+++-.. +|.+ ......++.++|+|+|
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~l~~~g~~lG~aFQ 211 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLVPFINLLGIIYQ 211 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 3456677788899999999852 1 4589998777766555555555554322 1211 1233488999999999
Q ss_pred HHHHHhchH-----------hhhhhCCCCCccccHH
Q 022527 89 KTNIIRDYL-----------EDINEIPKCRMFWPRE 113 (295)
Q Consensus 89 ltNILRD~~-----------ED~~e~~~GR~ylP~e 113 (295)
+.+=+-|+. .|+. .|.+-||.=
T Consensus 212 i~DD~ld~~~~~~~~GK~~g~Dl~---egK~Tlp~i 244 (340)
T 2e8v_A 212 IRDDYLNLKDFQMSSEKGFAEDIT---EGKLSFPIV 244 (340)
T ss_dssp HHHHHHHHHC-----CCCTTHHHH---TTCCCHHHH
T ss_pred HHHHHHhccCChhhhCCCchhhHh---cCCchHHHH
Confidence 999888874 6777 588888874
No 35
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=90.50 E-value=3.4 Score=38.90 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhccc--------cCCHHHHHHHHHhhhhHH-HHHHHH---hhcc-cCCCC-CChhHHHHHH
Q 022527 18 YQDAIEDITKRMGAGMAKFICKE--------VESIDDYDEYCYYVAGLV-GLGLSK---LFYA-SGTED-LAPDSLSNSM 83 (295)
Q Consensus 18 ~~~~i~di~~~m~~GMa~dl~~~--------~~T~~dLd~Yc~~VAG~V-G~ll~~---l~~~-~~~~~-~~~~~~A~sl 83 (295)
.-+++.+.+.+|..|...|+... -.|+++|..=+.+=.|.. ....+. +++. ...+. .....++.++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~l 249 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEM 249 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 35667788889999999999632 347888866555444443 222222 2221 11010 1234778999
Q ss_pred HHHHHHHHHHhchH----------hhhhhCCCCCccccHH
Q 022527 84 GLFLQKTNIIRDYL----------EDINEIPKCRMFWPRE 113 (295)
Q Consensus 84 G~aLQltNILRD~~----------ED~~e~~~GR~ylP~e 113 (295)
|+|+|+.+=+-|+- .|+. .|.+-||.=
T Consensus 250 G~aFQI~DD~LD~~gd~~~~GK~g~Dl~---egK~T~p~l 286 (367)
T 1uby_A 250 GEYFQIQDDYLDCFGDPALTGAVGTDIQ---DNKCSWLVV 286 (367)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSCCCCCSS---SCCCCHHHH
T ss_pred HHHHHHHHHHHHhcCChhhcCCchhhHH---cCCchHHHH
Confidence 99999999998885 4677 589999974
No 36
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=89.86 E-value=5.9 Score=36.49 Aligned_cols=118 Identities=19% Similarity=0.024 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhcc--ccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCC----ChhHHHHHHHHHHHHHHHHhchHhh
Q 022527 27 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL----APDSLSNSMGLFLQKTNIIRDYLED 99 (295)
Q Consensus 27 ~~m~~GMa~dl~~--~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~~----~~~~~A~slG~aLQltNILRD~~ED 99 (295)
..|..|...|+.. .-.|.++|..-+.+=.|......+++-.. +|.+.. ....++.++|+|+|+.+=+-|+--|
T Consensus 159 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 238 (311)
T 3llw_A 159 KGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQD 238 (311)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4688898888863 35688888766555444444444443221 121221 2237889999999999988888766
Q ss_pred hhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 022527 100 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 160 (295)
Q Consensus 100 ~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~ 160 (295)
-. .++|-+ .+ .+++.+=.....+..--..+.+++.+|...+..++
T Consensus 239 ~~------------~~GK~~---g~-~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~ 283 (311)
T 3llw_A 239 EE------------ESGKTT---HL-DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALK 283 (311)
T ss_dssp ----------------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hH------------HHCccc---cc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55 233322 23 55666766777777777888889999998888743
No 37
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=88.99 E-value=2.8 Score=38.36 Aligned_cols=121 Identities=16% Similarity=0.085 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhcc--ccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhh
Q 022527 26 TKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLED 99 (295)
Q Consensus 26 ~~~m~~GMa~dl~~--~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQltNILRD~~ED 99 (295)
+..|..|...|+.. .-.|.++|..-..+=.|......+++-.. ++.+. .....++.++|+|+|+.+=+-|+.-|
T Consensus 144 ~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 223 (291)
T 3npk_A 144 LNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTS 223 (291)
T ss_dssp TTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45688898888852 35688888777655555555555543211 12111 12337889999999999988888766
Q ss_pred hhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 022527 100 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 162 (295)
Q Consensus 100 ~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~~ 162 (295)
-.+ +.|-... | +++.+=.....+..--..+.+++.+|...+..++..
T Consensus 224 ~~~------------~GK~~~~--d--~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~ 270 (291)
T 3npk_A 224 QEQ------------SGKPTNN--D--IHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEK 270 (291)
T ss_dssp ------------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred hHH------------HCCccch--h--cCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhchh
Confidence 542 2222111 2 455666666667777778888899999888888654
No 38
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=88.73 E-value=4.7 Score=38.23 Aligned_cols=138 Identities=12% Similarity=-0.022 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhhcc---ccCCHHHHHHHHHhhhhHH-HHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHH
Q 022527 21 AIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNI 92 (295)
Q Consensus 21 ~i~di~~~m~~GMa~dl~~---~~~T~~dLd~Yc~~VAG~V-G~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQltNI 92 (295)
++.+.+.+|..|...|+.. ...|.++|..-..+=.|.. ....+++-.. +|.+. .....++.++|+|+|+.+=
T Consensus 179 ~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DD 258 (380)
T 3lk5_A 179 AWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDD 258 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556788898888863 2458888866544444433 2333322111 12111 1233788999999999998
Q ss_pred Hhch-----------HhhhhhCCCCCccccHHHHHhccC--Ch------hhhhcccCCHH----HHHH------HHHHHH
Q 022527 93 IRDY-----------LEDINEIPKCRMFWPREIWSKYVN--KL------EDLKYEENSDK----AVQC------LNDMVT 143 (295)
Q Consensus 93 LRD~-----------~ED~~e~~~GR~ylP~e~l~k~g~--~~------~dl~~~~~~~~----~~~~------l~~lv~ 143 (295)
+-|+ +.|+. .|..-||.=..-+... ++ .++..+..++. ++.. +.....
T Consensus 259 iLd~~gd~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~ 335 (380)
T 3lk5_A 259 LLGVFGDPAITGKPAGDDIR---EGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQ 335 (380)
T ss_dssp HHHHHSCHHHHSSCTTHHHH---TTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHhccCChhhhCCCchhhHh---cCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHH
Confidence 8887 56888 5888888643322211 11 11222212222 2221 233445
Q ss_pred HHHHHHHHHHHHHHhchh
Q 022527 144 NALMHVEDCLKYMSALRD 161 (295)
Q Consensus 144 ~A~~hl~~a~~yl~~l~~ 161 (295)
.+..+..+|+..+..+|.
T Consensus 336 ~~~~~~~~A~~~L~~lp~ 353 (380)
T 3lk5_A 336 RISQLTESGLAHLDDVDI 353 (380)
T ss_dssp HHHHHHHHHHHHGGGSCC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 567777777777777763
No 39
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=87.68 E-value=3.9 Score=37.98 Aligned_cols=93 Identities=18% Similarity=0.134 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHHhhccc---cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHH
Q 022527 19 QDAIEDITKRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTN 91 (295)
Q Consensus 19 ~~~i~di~~~m~~GMa~dl~~~---~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aLQltN 91 (295)
-+++.+.+..|..|...|+... -.|.++|..-+++=.|......+++-.. +|.+. .....++.++|+|+|+.+
T Consensus 139 ~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~D 218 (342)
T 1wy0_A 139 LEVIVKASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWD 218 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677789999999999632 3488888777766666665555554321 22111 123378899999999999
Q ss_pred HHhchH-----------hhhhhCCCCCccccHHH
Q 022527 92 IIRDYL-----------EDINEIPKCRMFWPREI 114 (295)
Q Consensus 92 ILRD~~-----------ED~~e~~~GR~ylP~e~ 114 (295)
=+-|+. .|+. .|.+-||.=.
T Consensus 219 D~lD~~~d~~~~GK~~g~Dl~---egK~Tlp~i~ 249 (342)
T 1wy0_A 219 DVLDLIADEKKLGKPVGSDIR---KGKKTLIVAH 249 (342)
T ss_dssp HHHHHHSCHHHHTSCSCHHHH---HTCCCHHHHH
T ss_pred HHHhccCChhhhCCCchhHHh---CCCCcHHHHH
Confidence 888864 6777 4888888743
No 40
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=87.67 E-value=11 Score=35.74 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHhhccc-------------------cCCHHHHHHHHHhhhhHH-HHHHHH---hhcccCCCC--
Q 022527 19 QDAIEDITKRMGAGMAKFICKE-------------------VESIDDYDEYCYYVAGLV-GLGLSK---LFYASGTED-- 73 (295)
Q Consensus 19 ~~~i~di~~~m~~GMa~dl~~~-------------------~~T~~dLd~Yc~~VAG~V-G~ll~~---l~~~~~~~~-- 73 (295)
-+++.+.+..|..|...|+... -.|.++|..-+.+=.|.. ....++ +++....+.
T Consensus 181 ~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~ 260 (390)
T 3dyh_A 181 LCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDM 260 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHH
Confidence 4566677889999999999641 247788765555444443 333222 332211111
Q ss_pred CChhHHHHHHHHHHHHHHHHhchH----------hhhhhCCCCCccccHH
Q 022527 74 LAPDSLSNSMGLFLQKTNIIRDYL----------EDINEIPKCRMFWPRE 113 (295)
Q Consensus 74 ~~~~~~A~slG~aLQltNILRD~~----------ED~~e~~~GR~ylP~e 113 (295)
.....++.++|+|+|+.+=+-|+- .|+. .|.+-||.=
T Consensus 261 ~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~---egK~T~pvi 307 (390)
T 3dyh_A 261 GVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQ---DAKCSWLAV 307 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT---TTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHhCCCcchhh---cCCccHHHH
Confidence 113478999999999999888884 4788 699988864
No 41
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=87.02 E-value=13 Score=35.00 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcccc----CCH-HHHHHHH-HhhhhHHHHHHHH---hhcccCCCC---CChhHHHHHHHHH
Q 022527 19 QDAIEDITKRMGAGMAKFICKEV----ESI-DDYDEYC-YYVAGLVGLGLSK---LFYASGTED---LAPDSLSNSMGLF 86 (295)
Q Consensus 19 ~~~i~di~~~m~~GMa~dl~~~~----~T~-~dLd~Yc-~~VAG~VG~ll~~---l~~~~~~~~---~~~~~~A~slG~a 86 (295)
-+++.+.+.+|..|...|+.... .+. ++|..=. +-+|..-..+.++ +++....+. .....++.++|.|
T Consensus 170 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~a 249 (368)
T 2her_A 170 QKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEF 249 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Confidence 45667778899999999997432 344 4553333 3333330222222 233221121 1234889999999
Q ss_pred HHHHHHHhchH------hhhhhCCCCCccccHHHHHhccCChhh---h---hcccCCHHHHHHH------HHHHHHHHHH
Q 022527 87 LQKTNIIRDYL------EDINEIPKCRMFWPREIWSKYVNKLED---L---KYEENSDKAVQCL------NDMVTNALMH 148 (295)
Q Consensus 87 LQltNILRD~~------ED~~e~~~GR~ylP~e~l~k~g~~~~d---l---~~~~~~~~~~~~l------~~lv~~A~~h 148 (295)
+|+.+=+-|+- .|+. .|.+-||.=..-+. .++++ | ..... +.+.+++ ......+..+
T Consensus 250 FQI~DD~LD~~~~GK~g~Dl~---egK~T~pvi~al~~-a~~~~r~~L~~~~~~~~-~~v~~li~~~g~~~~~~~~~~~~ 324 (368)
T 2her_A 250 YQVHNDVSDYLFNDSNADDIC---RFKLTWPLQKSFEI-ADEEMKLKISENYGKNS-SLVKDCYNLLKINEHYLEYQRNA 324 (368)
T ss_dssp HHHHHHHHHHHSCCSSSCTTT---TTCCCHHHHSSTTT-CCHHHHHHHHHHTTTCH-HHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCChHh---CCcccHHHHHHHHh-CCHHHHHHHHHHhCCcH-HHHHHHHHHCCcHHHHHHHHHHH
Confidence 99999888874 7998 59999987422221 12211 1 11111 3444432 2333445666
Q ss_pred HHHHHHHHHhchhh
Q 022527 149 VEDCLKYMSALRDH 162 (295)
Q Consensus 149 l~~a~~yl~~l~~~ 162 (295)
+.++...+..+|..
T Consensus 325 ~~~A~~~L~~lp~~ 338 (368)
T 2her_A 325 LDYLIKLVKDITDD 338 (368)
T ss_dssp HHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCc
Confidence 77777777777654
No 42
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=86.54 E-value=7.1 Score=35.50 Aligned_cols=122 Identities=11% Similarity=0.019 Sum_probs=74.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHhhhhHHHHHHHHhhcccC-CCC--CChhHHHHHHHHHHHHHH
Q 022527 15 GKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASG-TED--LAPDSLSNSMGLFLQKTN 91 (295)
Q Consensus 15 ~~~~~~~i~di~~~m~~GMa~dl~~~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~~~-~~~--~~~~~~A~slG~aLQltN 91 (295)
++..-+++.+.+..|..|...|+.. .++|....++=.|......+++-..-+ .+. .....++.++|.|+|+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~GQ~~dl~~----~~~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~l~~~g~~lG~aFQi~D 208 (289)
T 2azj_A 133 GDDALNTSIELWKDTSVGALRDMYD----NSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVID 208 (289)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTT----TSCHHHHHHHHTHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777788899999999874 455555555544444444444322111 111 112378899999999999
Q ss_pred HHhchHh----hhhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022527 92 IIRDYLE----DINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 161 (295)
Q Consensus 92 ILRD~~E----D~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~~ 161 (295)
=+-|+.- |+. .|..-||.=. .+.|. +. ++ -..+..+.++|+..+..+|.
T Consensus 209 DilD~~~~~K~dl~---~gk~Tlp~l~-~~~g~-----------~~---a~---~~~a~~~~~~A~~~L~~lp~ 261 (289)
T 2azj_A 209 DFVDYKTKKVEEID---GSAKQLFKYY-REGKL-----------EE---YV---RSVYLEYKQKYDELISNIPF 261 (289)
T ss_dssp HHHHHTTSCTTTCC---TTGGGGHHHH-TTTCH-----------HH---HH---HHHHHHHHHHHHHHHHTSCC
T ss_pred hhhhhcCCCChhhh---cCcccHHHHH-HcCCH-----------HH---HH---HHHHHHHHHHHHHHHHhCCC
Confidence 8888853 344 3556677632 11111 11 11 23678888899988888876
No 43
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=83.34 E-value=31 Score=32.54 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHhhcc---------------------------ccCCHHHHHHHH-HhhhhHHHHHHH---Hhhcc
Q 022527 20 DAIEDITKRMGAGMAKFICK---------------------------EVESIDDYDEYC-YYVAGLVGLGLS---KLFYA 68 (295)
Q Consensus 20 ~~i~di~~~m~~GMa~dl~~---------------------------~~~T~~dLd~Yc-~~VAG~VG~ll~---~l~~~ 68 (295)
+++.+.+.+|..|...|+.. .-.|+++|..=. +-+|.......+ .+++.
T Consensus 181 ~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag 260 (395)
T 3mav_A 181 ATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAG 260 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 44556677888898888741 123666664433 344443222222 22322
Q ss_pred cCCCCC---ChhHHHHHHHHHHHHHHHHhch----------HhhhhhCCCCCccccHHH
Q 022527 69 SGTEDL---APDSLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPREI 114 (295)
Q Consensus 69 ~~~~~~---~~~~~A~slG~aLQltNILRD~----------~ED~~e~~~GR~ylP~e~ 114 (295)
...+.. ...+++..+|+|+|+.+=+-|+ +.|+. .|.+-||.=.
T Consensus 261 ~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~---egK~T~p~i~ 316 (395)
T 3mav_A 261 IAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ---NNKLTWPLIK 316 (395)
T ss_dssp CCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTT---TTCCCHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHh---cCCchHHHHH
Confidence 111111 1236888999999999988886 36788 5888888743
No 44
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=76.91 E-value=25 Score=31.85 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=63.6
Q ss_pred hhHHHHHHH-----HHHHHHHHhhcccc-----CCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHH
Q 022527 19 QDAIEDITK-----RMGAGMAKFICKEV-----ESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMG 84 (295)
Q Consensus 19 ~~~i~di~~-----~m~~GMa~dl~~~~-----~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG 84 (295)
.+++..+.. .|..|...|+...- .|.++|..-+.+=.|......+++-.. +|.+. .....++.++|
T Consensus 147 ~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG 226 (293)
T 2j1p_A 147 VRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIG 226 (293)
T ss_dssp HHHHHHHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 344555543 58899999996432 345555554444344444444443221 22111 12337889999
Q ss_pred HHHHHHHHHhchHhhhhhCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 022527 85 LFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 160 (295)
Q Consensus 85 ~aLQltNILRD~~ED~~e~~~GR~ylP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~l~ 160 (295)
+|+|+.+=+-|+..|- ..-+|. .-.+..-...|.++.++|+..+..++
T Consensus 227 ~aFQI~DDiLD~~~~~------K~T~p~----------------------l~gle~a~~~a~~~~~~A~~~L~~l~ 274 (293)
T 2j1p_A 227 LLFQVVDDILDVTKSS------KLTYPK----------------------LMGLEKSREFAEKLNTEARDQLLGFD 274 (293)
T ss_dssp HHHHHHHHHHHHHC--------CCCHHH----------------------HHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHccCCc------cccHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999988777775443 233442 11344455667777788887777776
No 45
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=74.11 E-value=57 Score=30.39 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHhhcc----c-cCCHHHHHH-HHHhhhhHHHHHHHH---hhccc--CCCC-CChhHHHHHHHHHH
Q 022527 20 DAIEDITKRMGAGMAKFICK----E-VESIDDYDE-YCYYVAGLVGLGLSK---LFYAS--GTED-LAPDSLSNSMGLFL 87 (295)
Q Consensus 20 ~~i~di~~~m~~GMa~dl~~----~-~~T~~dLd~-Yc~~VAG~VG~ll~~---l~~~~--~~~~-~~~~~~A~slG~aL 87 (295)
+++.+.+.+|..|...|+.. . -.|.++|.. .-+-+|+......+. +++.. ..+. .....++..+|+|+
T Consensus 171 ~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aF 250 (368)
T 2q58_A 171 KIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFY 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHH
Confidence 44555666788888888852 1 235555543 344556553333222 22211 1111 22447899999999
Q ss_pred HHHHHHhch------HhhhhhCCCCCccccHH
Q 022527 88 QKTNIIRDY------LEDINEIPKCRMFWPRE 113 (295)
Q Consensus 88 QltNILRD~------~ED~~e~~~GR~ylP~e 113 (295)
|+.+=+-|+ +.|+. .|.+-||.=
T Consensus 251 QI~DDiLD~~~gK~~g~Dl~---egK~T~p~i 279 (368)
T 2q58_A 251 QVHNDVSDYLFNDSNADDIC---RFKLTWPLQ 279 (368)
T ss_dssp HHHHHHHHHHSCCCSSCTTT---SCCCCHHHH
T ss_pred HHHHHHhhcccCCCCCchHh---cCCcHHHHH
Confidence 999988885 57999 699999863
No 46
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=62.96 E-value=18 Score=32.47 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=44.5
Q ss_pred hhHHHHHH-----HHHHHHHHHhhccc--cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHH
Q 022527 19 QDAIEDIT-----KRMGAGMAKFICKE--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFL 87 (295)
Q Consensus 19 ~~~i~di~-----~~m~~GMa~dl~~~--~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aL 87 (295)
.+++.+++ ..|..|...|+... ..|.++|..-+.+=.|....+.+++-.. +|.+. .....++.++|+++
T Consensus 136 ~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aF 215 (274)
T 3kra_B 136 LRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLR 215 (274)
T ss_dssp HHHHHHHHHHTSTTTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34555565 45789999998632 5688888765554444445555544221 22111 12337888999999
Q ss_pred HHHH
Q 022527 88 QKTN 91 (295)
Q Consensus 88 QltN 91 (295)
|+.+
T Consensus 216 QI~D 219 (274)
T 3kra_B 216 GMME 219 (274)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9944
No 47
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=58.47 E-value=1.4e+02 Score=29.29 Aligned_cols=102 Identities=10% Similarity=0.070 Sum_probs=54.4
Q ss_pred ccCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCCCCh--------hHHHHHHHHHHHHHHHHhchHhhhhhCCCCCcccc
Q 022527 40 EVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAP--------DSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWP 111 (295)
Q Consensus 40 ~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~~~~~~~~~--------~~~A~slG~aLQltNILRD~~ED~~e~~~GR~ylP 111 (295)
.++|++||......+.|.--..+...++....-.... ..+.+..+...-+.|=|..+..+.+ +|.+-=-
T Consensus 388 ~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~---rG~v~n~ 464 (549)
T 1n1b_A 388 YTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELA---RGDVPKT 464 (549)
T ss_dssp CCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC------------CCCCH
T ss_pred CCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhc---cCCccHH
Confidence 4789999999888777754444444444321101111 1344455555666666666666665 5654111
Q ss_pred H-HHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Q 022527 112 R-EIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCL 153 (295)
Q Consensus 112 ~-e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~ 153 (295)
- =.+.++|++.+ .+..-++.++.++.+.+.+..
T Consensus 465 V~cyMke~g~s~e---------eA~~~i~~~i~~~wk~ln~e~ 498 (549)
T 1n1b_A 465 IQCYMKETNASEE---------EAVEHVKFLIREAWKDMNTAI 498 (549)
T ss_dssp HHHHHHHHCCCHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 1 13456676544 466678899999988777643
No 48
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=54.34 E-value=1.4e+02 Score=28.36 Aligned_cols=106 Identities=11% Similarity=-0.041 Sum_probs=59.8
Q ss_pred cccCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCC-----CChhHHHHHHHHHHHHHHHHhchHhhhhhCCCC-Cc-ccc
Q 022527 39 KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED-----LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKC-RM-FWP 111 (295)
Q Consensus 39 ~~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~~~~~~-----~~~~~~A~slG~aLQltNILRD~~ED~~e~~~G-R~-ylP 111 (295)
+.++|++||..+-..+++.....+...+......+ .....+-+..+...-++|=|..+..+.+ +| .+ =..
T Consensus 281 g~vPsleEYl~~R~~sg~~p~~~l~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~Sy~kE~~---~gg~~~N~V 357 (433)
T 3v1v_A 281 GHVPEVWEYLAMRQFNNFRPCPTITDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYSYTKELN---SPGRHLNLP 357 (433)
T ss_dssp TCCCCHHHHHHHHHHSSSTTTGGGHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHSHHHHTT---SSSCCCCHH
T ss_pred CCCCCHHHHHHHHHHHhHHHHHHHHHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHHHHHHHh---cCCCCCcHH
Confidence 35899999999877763322222222221110111 1112456677888888888888888877 53 43 333
Q ss_pred HHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022527 112 REIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYM 156 (295)
Q Consensus 112 ~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl 156 (295)
.=++.++|++.++ +..-+.+++.+..+.+.+...-+
T Consensus 358 ~~~mke~g~S~ee---------A~~~v~~~i~~~~~~F~~~~~~L 393 (433)
T 3v1v_A 358 VVIAEREQLCERD---------AYLKAVEVHNELQHSFEAAAADL 393 (433)
T ss_dssp HHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355677776553 44445566666666665555433
No 49
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=50.75 E-value=1.5e+02 Score=27.25 Aligned_cols=132 Identities=9% Similarity=-0.074 Sum_probs=77.9
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhc----cccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC-----CChhHHHHHHH
Q 022527 15 GKGYQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED-----LAPDSLSNSMG 84 (295)
Q Consensus 15 ~~~~~~~i~di~~~m~~GMa~dl~----~~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~~-----~~~~~~A~slG 84 (295)
.+..+..+++.+.++..++..-.. +.++|++||..+-..+.|.--.+..-.++. ....+ +....+-+..+
T Consensus 175 ~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~p~~~~l~~~~~ 254 (382)
T 3kb9_A 175 PATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQ 254 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhChHHHHHHHHHH
Confidence 444455555555666666654432 358999999999887777533332222221 11111 11124566778
Q ss_pred HHHHHHHHHhchHhhhhhCCCCCcc-ccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022527 85 LFLQKTNIIRDYLEDINEIPKCRMF-WPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSA 158 (295)
Q Consensus 85 ~aLQltNILRD~~ED~~e~~~GR~y-lP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~ 158 (295)
...-++|=|-.+..+.+ +|.+- .-.=.+..+|++.+ .+...+.+++.++.+.+.++..-+..
T Consensus 255 ~i~rL~NDi~S~~kE~~---~G~~~N~V~~~m~~~g~s~e---------eA~~~v~~~i~~~~k~~~~~~~~L~~ 317 (382)
T 3kb9_A 255 EFAAWYNDLCSLPKEIA---GDEVHNLGISLITHHSLTLE---------EAIGEVRRRVEECITEFLAVERDALR 317 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---TTCCCSHHHHHHHHSCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---cCCcccHHHHHHHcCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888887 57541 11223455676644 45666778888887777766655443
No 50
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=39.23 E-value=2e+02 Score=25.40 Aligned_cols=131 Identities=7% Similarity=-0.152 Sum_probs=75.8
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhc----cccC-CHHHHHHHHHhhhhHHHHHHHHhhccc-CCCC-----CChhHHHHHH
Q 022527 15 GKGYQDAIEDITKRMGAGMAKFIC----KEVE-SIDDYDEYCYYVAGLVGLGLSKLFYAS-GTED-----LAPDSLSNSM 83 (295)
Q Consensus 15 ~~~~~~~i~di~~~m~~GMa~dl~----~~~~-T~~dLd~Yc~~VAG~VG~ll~~l~~~~-~~~~-----~~~~~~A~sl 83 (295)
.+.-+..+.+.++.+..++..-.. +.++ |++||..+-..+.|.--.+.+-.++.. ..++ +....+-+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~l~~~~ 211 (337)
T 1ps1_A 132 TPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIA 211 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHHHHHHHH
Confidence 333344555555566666554322 3578 999998888777765443333333221 1111 1112466678
Q ss_pred HHHHHHHHHHhchHhhhhhCCCCCcc-ccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022527 84 GLFLQKTNIIRDYLEDINEIPKCRMF-WPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMS 157 (295)
Q Consensus 84 G~aLQltNILRD~~ED~~e~~~GR~y-lP~e~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~ 157 (295)
+...-++|=|-.+..+.. +|-+- .-.=.+.++|++.+ .+..-+.+++.++.+.+.+...-+.
T Consensus 212 ~~i~rL~NDl~S~~kE~~---~G~~~n~V~~~m~~~g~s~e---------eA~~~v~~~i~~~~~~~~~~~~~lp 274 (337)
T 1ps1_A 212 VDVNLLLNDIASLEKEEA---RGEQNNMVMILRREHGWSKS---------RSVSHMQNEVRARLEQYLLLESCLP 274 (337)
T ss_dssp HHHHHHHHHHHTHHHHHH---TTCCCSHHHHHHHHHCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHh---cCCcchHHHHHHHHcCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888898888888887 67632 22224556676644 4566678888888877776664443
No 51
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=36.43 E-value=15 Score=25.49 Aligned_cols=22 Identities=18% Similarity=0.059 Sum_probs=19.3
Q ss_pred CCCccccHHHHHhccCChhhhh
Q 022527 105 KCRMFWPREIWSKYVNKLEDLK 126 (295)
Q Consensus 105 ~GR~ylP~e~l~k~g~~~~dl~ 126 (295)
+||+.+|.|+.++.|+++.|-.
T Consensus 21 kGqItIPkeiR~~Lgi~~Gd~l 42 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIAEKDAL 42 (59)
T ss_dssp TCEEECCHHHHHHTTCCTTCEE
T ss_pred CCEEEeCHHHHHHcCCCCCCEE
Confidence 7999999999999999877643
No 52
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=33.05 E-value=44 Score=30.28 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=42.0
Q ss_pred cccChhhhhHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCC-C-CChhHHHHHHHHHHH
Q 022527 12 LELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTE-D-LAPDSLSNSMGLFLQ 88 (295)
Q Consensus 12 ~~L~~~~~~~i~di~~~m~~GMa~dl~~~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~-~~~~-~-~~~~~~A~slG~aLQ 88 (295)
.++++..-+++.+.+..|..|...|+...... ..-+.+|+. ..+.+++-.. +|.+ . .....++.++|.|+|
T Consensus 128 ~~~~~~~~~~ls~~~~~~~~GQ~lDl~~~~~~-----~i~~KTg~L-f~~a~~lGa~lag~~~~~~~l~~~G~~lGlAFQ 201 (285)
T 4fp4_A 128 VNLGADVVTYLADVAQRLSVGQALDLEGERDK-----AAEFKTAPL-IEAALVMPLVILGRRELIETAKKLGTKLGILYQ 201 (285)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHTTCHHH-----HHHHHTHHH-HHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHHHHhHHHHHhccccc-----hhhcCcHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 34455566777888889999999998632211 333344444 3333332211 1111 1 123378899999999
Q ss_pred HHHHHhchH
Q 022527 89 KTNIIRDYL 97 (295)
Q Consensus 89 ltNILRD~~ 97 (295)
+.+=+-|+.
T Consensus 202 I~DDiLD~~ 210 (285)
T 4fp4_A 202 YSDDYSDEN 210 (285)
T ss_dssp CC-------
T ss_pred HHHHHhccC
Confidence 877666654
No 53
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=32.38 E-value=1.1e+02 Score=27.28 Aligned_cols=71 Identities=10% Similarity=-0.025 Sum_probs=38.9
Q ss_pred hhHHHHHHH-----HHHHHHHHhhccc-cCCHHHHHHH-HHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHH
Q 022527 19 QDAIEDITK-----RMGAGMAKFICKE-VESIDDYDEY-CYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFL 87 (295)
Q Consensus 19 ~~~i~di~~-----~m~~GMa~dl~~~-~~T~~dLd~Y-c~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~slG~aL 87 (295)
.+++.++++ .|..|...|+... -.+.+.++.- -+-+|.+ ....+++-.. +|.+. .....++.++|+++
T Consensus 138 ~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L-~~~a~~lGailaga~~~~~~~l~~~G~~lGlaF 216 (273)
T 3qkc_B 138 LRAIIELTRVMGSEGIVEGQYHELGLNQLNDLELIEYVCKKKEGTL-HACGAACGAILGGCDEDKIEKLRRFGLYVGTVQ 216 (273)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHTTCCSSCCHHHHHHHHHHTHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 456666654 4688999998642 2245445433 3444444 4444444211 12111 12337888999999
Q ss_pred HHH
Q 022527 88 QKT 90 (295)
Q Consensus 88 Qlt 90 (295)
|+.
T Consensus 217 QI~ 219 (273)
T 3qkc_B 217 GLL 219 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
No 54
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=31.76 E-value=23 Score=23.56 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.8
Q ss_pred CCCccccHHHHHhccCChhhh
Q 022527 105 KCRMFWPREIWSKYVNKLEDL 125 (295)
Q Consensus 105 ~GR~ylP~e~l~k~g~~~~dl 125 (295)
+||+-+|.++..+.|++..|-
T Consensus 11 kgqi~IPk~ir~~lgi~~Gd~ 31 (53)
T 2l66_A 11 NYQVTIPAKVRQKFQIKEGDL 31 (53)
T ss_dssp SSCBCCCHHHHHHSCCCTTCE
T ss_pred CCEEEeCHHHHHHcCcCCCCE
Confidence 699999999999999987764
No 55
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=20.49 E-value=6.2e+02 Score=24.89 Aligned_cols=99 Identities=8% Similarity=0.061 Sum_probs=52.2
Q ss_pred cccCCHHHHHHHHHhhhhHHHHHHHHhhcccC-CCCC------ChhHHHHHHHHHHHHHHHHhchHhhhhhCCCCCcccc
Q 022527 39 KEVESIDDYDEYCYYVAGLVGLGLSKLFYASG-TEDL------APDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWP 111 (295)
Q Consensus 39 ~~~~T~~dLd~Yc~~VAG~VG~ll~~l~~~~~-~~~~------~~~~~A~slG~aLQltNILRD~~ED~~e~~~GR~ylP 111 (295)
+.++|++||-....-+.|.--..++..++... .... ....+.+..+...-+.|=|..+....+ +|- .+
T Consensus 392 gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~---rG~--va 466 (554)
T 3g4d_A 392 NYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHR---RED--DC 466 (554)
T ss_dssp TCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC-----------CC
T ss_pred CCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhc---cCC--cc
Confidence 35899999999988877765555544554321 0000 011333444444445554444444444 443 33
Q ss_pred HH---HHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Q 022527 112 RE---IWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVED 151 (295)
Q Consensus 112 ~e---~l~k~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~ 151 (295)
.- .+.++|++.+ .+..-+..+++++.+-+.+
T Consensus 467 n~V~cYMke~GvSeE---------eA~~~i~~~Ie~~wK~lN~ 500 (554)
T 3g4d_A 467 SAIECYMEEYGVTAQ---------EAYDVFNKHVESAWKDLNQ 500 (554)
T ss_dssp CHHHHHHHHHTCCHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHH
Confidence 32 2455676655 4566688888888776653
Done!