BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022528
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
           Phosphorylation Of Tyrosine 151
 pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
           Phosphorylation Of Tyrosine 151
          Length = 224

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 83  LLDQAKMAAELAVKDGMKLMEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPE 142
           +L QAK  A    K    +  + F   G DS  GDS G +   G ++ +  + D      
Sbjct: 142 VLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQLQGVVSWGDGCAQKN 201

Query: 143 K-VTRTRIFFPEANEVKFARKSV 164
           K    T+++    N VK+ + ++
Sbjct: 202 KPGVYTKVY----NYVKWIKNTI 220


>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
           D-Phe-Pro-Arg- Chloromethylketone
          Length = 228

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 59  TNSVSSDGNNSINVDVPFPSDYSEL----LDQAKMAAELAVKDGMKLMEIEFPTAGLDSV 114
           T  + S   N+ +    +P +   L    L QAK  A    K    +  + F   G DS 
Sbjct: 118 TKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSC 177

Query: 115 PGDSEGGIEMTGSMRLICEFCDLFVTPEK-VTRTRIFFPEANEVKFARKSV 164
            GDS G +   G ++ +  + D      K    T+++    N VK+ + ++
Sbjct: 178 QGDSGGPVVCNGQLQGVVSWGDGCAQKNKPGVYTKVY----NYVKWIKNTI 224


>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
           Trypsin Inhibitor (bpti)
 pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
           Trypsin Inhibitor (bpti)
          Length = 224

 Score = 27.7 bits (60), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 83  LLDQAKMAAELAVKDGMKLMEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPE 142
           +L QAK  A    K    +  + F   G DS  GD+ G +   G ++ +  + D      
Sbjct: 142 VLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDAGGPVVCNGQLQGVVSWGDGCAQKN 201

Query: 143 K-VTRTRIFFPEANEVKFARKSV 164
           K    T+++    N VK+ + ++
Sbjct: 202 KPGVYTKVY----NYVKWIKNTI 220


>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
           Peptide- Binding Site
 pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
           Peptide- Binding Site
          Length = 243

 Score = 27.7 bits (60), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 205 VAYPYFNVNEMLVVEELYKEA--VFNTAWKLIIFNGELDRIRSGYYPSFFYPKLA 257
            A  Y+    + VV+E+YKEA  +F  A +  + NG+L  +          PKLA
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,923,915
Number of Sequences: 62578
Number of extensions: 363244
Number of successful extensions: 728
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 4
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)