BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022528
         (295 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P38290|UBS1_YEAST Ubiquitin-conjugating enzyme suppressor 1 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=UBS1 PE=4
           SV=1
          Length = 277

 Score = 33.1 bits (74), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 198 LEDELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLA 257
           L+D LF +  P F++     ++       FN AW  II+           + S+F   + 
Sbjct: 99  LQDLLFHIWQPLFHIQATEDLQYSPSTVKFNRAWNRIIYKD---------FKSYFPELIG 149

Query: 258 ALSKTLFPVMETIYYIHNFKGRNGGTLFRFLEG 290
            L    + ++++    HN    NGG++  F+  
Sbjct: 150 TLQPGDYSIVKSYSKNHNISNSNGGSVNEFMSS 182


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,979,536
Number of Sequences: 539616
Number of extensions: 4679033
Number of successful extensions: 10564
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10563
Number of HSP's gapped (non-prelim): 10
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)