Query 022528
Match_columns 295
No_of_seqs 91 out of 102
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09353 DUF1995: Domain of un 100.0 6.8E-43 1.5E-47 311.2 19.0 180 76-294 1-183 (209)
2 PLN02842 nucleotide kinase 100.0 5.1E-34 1.1E-38 285.0 15.0 172 85-294 245-453 (505)
3 COG0480 FusA Translation elong 39.4 42 0.00091 36.3 4.7 108 151-273 49-166 (697)
4 PF03681 UPF0150: Uncharacteri 37.2 28 0.0006 24.0 2.0 20 78-97 29-48 (48)
5 TIGR00057 Sua5/YciO/YrdC/YwlC 34.1 92 0.002 27.9 5.4 49 215-266 41-89 (201)
6 PF12487 DUF3703: Protein of u 31.6 27 0.00058 29.6 1.4 27 58-84 85-111 (112)
7 PRK11630 hypothetical protein; 31.2 1.2E+02 0.0025 27.5 5.6 53 214-269 46-98 (206)
8 PF00701 DHDPS: Dihydrodipicol 30.3 78 0.0017 29.4 4.4 39 201-239 98-136 (289)
9 PF00990 GGDEF: GGDEF domain; 30.1 66 0.0014 25.2 3.4 26 76-101 136-161 (161)
10 PF04413 Glycos_transf_N: 3-De 27.7 1.1E+02 0.0024 27.1 4.7 118 131-273 37-156 (186)
11 PF13466 STAS_2: STAS domain 24.3 2.9E+02 0.0062 20.2 7.4 65 83-161 11-75 (80)
12 COG0079 HisC Histidinol-phosph 24.0 3.6E+02 0.0079 26.4 7.9 101 125-239 82-185 (356)
13 TIGR03249 KdgD 5-dehydro-4-deo 22.3 2.7E+02 0.006 26.2 6.5 62 201-274 101-162 (296)
14 PRK10634 tRNA(ANN) t(6)A37 thr 21.9 1.8E+02 0.0038 26.0 4.9 67 199-269 27-94 (190)
15 PRK09549 mtnW 2,3-diketo-5-met 21.6 6E+02 0.013 25.9 9.0 178 78-286 81-268 (407)
16 TIGR03332 salvage_mtnW 2,3-dik 20.6 6.3E+02 0.014 25.8 9.0 159 79-262 87-254 (407)
No 1
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=100.00 E-value=6.8e-43 Score=311.19 Aligned_cols=180 Identities=31% Similarity=0.486 Sum_probs=148.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCce--EEEeecCCCCCCCCCCCCCcccccchHHHHHHHHhhcCCCCCCceEEEEecC
Q 022528 76 FPSDYSELLDQAKMAAELAVKDGMKL--MEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTRIFFPE 153 (295)
Q Consensus 76 ~P~sy~e~v~QA~~Av~~AL~DG~~l--lEVEFP~~~~~s~~Gd~eg~ie~n~~~~lar~f~~~f~~~~~g~rvri~FPD 153 (295)
||.||+|++.||++|+++||+||.+| |||+||.+ .+ ..++++++|++.|. +.+++++++|||
T Consensus 1 lP~s~~ea~~qA~~Av~~Al~~g~~r~~ve~~fP~l----~~----------~~~~la~~~~~~l~--~~~~~~~~~~pd 64 (209)
T PF09353_consen 1 LPSSLEEAVEQAAEAVQAALEDGDSRQLVELEFPGL----NP----------SNMPLAREFARKLA--ASGRRVRVVFPD 64 (209)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEECCCc----ch----------hHHHHHHHHHHHHH--hcCceEEEEcCC
Confidence 79999999999999999999988766 99999855 11 22788888888885 467999999999
Q ss_pred hHHHHHHHhhhcCCCeeeeeccCCCCcccccCCcccccccccCCCCCeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeE
Q 022528 154 ANEVKFARKSVFEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKL 233 (295)
Q Consensus 154 ~~eaalAr~~~f~g~~f~ld~l~k~s~~~~~G~~~r~~~~drv~~eDeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPl 233 (295)
++|+++|+ +.|++.++++.++.+..... +. ...|+++|||+|.. .|+..+|++|+. ..+||+
T Consensus 65 ~g~~alA~-~~~~~~~~~~~~l~~~~~~~-----------~~-~~~~~~~vvv~p~~--~~l~~~e~~~~~---~~~rpv 126 (209)
T PF09353_consen 65 AGEAALAR-RDWGDGSFKIASLDDWSSSE-----------DE-SKFDDILVVVAPSP--QELDDVEKLCEA---AGGRPV 126 (209)
T ss_pred hHHHHHHh-ccccCCCeEEeeccCccccc-----------cc-cccCCEEEEEECCh--hhHHHHHHHHHh---cCCCeE
Confidence 99999999 58898988886554421100 00 01179999999854 899999999999 677999
Q ss_pred EEEccchhhhh-cCCCCCccchHHHHHHHhhccCcceEEEEeecCCCCceeEEeecCCCCcC
Q 022528 234 IIFNGELDRIR-SGYYPSFFYPKLAALSKTLFPVMETIYYIHNFKGRNGGTLFRFLEGPQES 294 (295)
Q Consensus 234 Vl~N~eLd~vR-~gy~p~~F~p~~r~L~~rFLs~fe~VYYlrn~~g~~~GaLFR~YPGpWQv 294 (295)
||||++||++| .| .+|.+ |++|++||++||+||||||+.....|+|||||||||||
T Consensus 127 vl~Np~l~~~~~~g---~g~~~--r~~~~~Fl~~fe~vY~l~~l~~~~~gal~r~yP~~Wqv 183 (209)
T PF09353_consen 127 VLLNPQLEDVRSVG---FGFPG--RKLRERFLSSFETVYYLRPLRISGNGALFRCYPGPWQV 183 (209)
T ss_pred EEEecccccCCccc---ccccc--HHHHHHHHhhceEEEEEEeeccCCcEEEEEeCCCCcEE
Confidence 99999999999 55 34444 99999999999999999999654469999999999997
No 2
>PLN02842 nucleotide kinase
Probab=100.00 E-value=5.1e-34 Score=284.96 Aligned_cols=172 Identities=16% Similarity=0.115 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHcCCceEEEeecCCCCCCCCCCCCCcccccch---------HHHHHHHHhhcCCCCCCceEEEEecC-h
Q 022528 85 DQAKMAAELAVKDGMKLMEIEFPTAGLDSVPGDSEGGIEMTGS---------MRLICEFCDLFVTPEKVTRTRIFFPE-A 154 (295)
Q Consensus 85 ~QA~~Av~~AL~DG~~llEVEFP~~~~~s~~Gd~eg~ie~n~~---------~~lar~f~~~f~~~~~g~rvri~FPD-~ 154 (295)
.+|.+||++||+||++||+||+-.+ |+|.+ |+|+|+|+..|. +.|+++||+||| +
T Consensus 245 ~~~~~a~~~a~~~g~~r~~~~~~~p-------------el~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~kv~~~~~~ 309 (505)
T PLN02842 245 DDVLQATQRAVNDGRTRLKVEINIP-------------ELNPEMDVYRIGTLMELVRVLALSFA--DDGKRVKVCVQGSM 309 (505)
T ss_pred HHHHHHHHHHHhCCcceEEEEEecC-------------ccccccccccchhHHHHHHHHHHHHh--hcCCceEEEecCCc
Confidence 4789999999999999988876666 44443 789999999995 789999999999 9
Q ss_pred HHHHH--------------HHhhhcCCCeeeeeccCCCCcccccCCcccccccccCCCCCeEEEEEecCCCch---hHHH
Q 022528 155 NEVKF--------------ARKSVFEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFLVAYPYFNVN---EMLV 217 (295)
Q Consensus 155 ~eaal--------------Ar~~~f~g~~f~ld~l~k~s~~~~~G~~~r~~~~drv~~eDeifVvv~P~~s~~---El~~ 217 (295)
|+++| |+ .+|++.+|+=++ .+--++++ ++++++|++||+|.|.. .+ |+++
T Consensus 310 g~~~~~~~~~~~~~~~~~~~~-~dw~~~~~~~~~------~~~~~~~~-----~~~~~~d~~~i~v~P~~-~v~~~~~~~ 376 (505)
T PLN02842 310 GEGALAGMPLQLAGTRKILEF-MDWGDYGAKGTF------VKIGAIGA-----KEVDEEDDMFILVAPQN-AVGNCIIDD 376 (505)
T ss_pred chhHhccCccccccchhhhhh-cccccccccccc------eeeccccc-----CCCCCCCcEEEEEcCCc-cccccchHH
Confidence 99999 99 799998873322 11133444 56789999999999964 24 9999
Q ss_pred HHHHHHHhhhCCCeeEEEEccchhhh----hcC-CCCCccchHHHHHHHhhccCcceEEEEeecCCC-----CceeEEee
Q 022528 218 VEELYKEAVFNTAWKLIIFNGELDRI----RSG-YYPSFFYPKLAALSKTLFPVMETIYYIHNFKGR-----NGGTLFRF 287 (295)
Q Consensus 218 VEkl~e~~~~~~~rPlVl~N~eLd~v----R~g-y~p~~F~p~~r~L~~rFLs~fe~VYYlrn~~g~-----~~GaLFR~ 287 (295)
||++|+. +++||+||+||+|+++ .+| |. +|++|++|+++||+|||+||+... -.|||+|+
T Consensus 377 ~e~~~~~---~~~rpvillnp~LeD~~~~vGig~~~-------~R~~R~~f~~t~~~~Y~~~~l~~~~~~~~~~gal~~~ 446 (505)
T PLN02842 377 LQAMTTA---AGKRPVILVNPRLKDLPGSSGIMQTM-------GREQRLEYAASFENCYSFRLLYYAGTQYPIMGALRMS 446 (505)
T ss_pred HHHHHHH---hCCCeEEEECCcccccccccchhHHH-------HHHHHHHHHHHhhheeEEEeccccccccccceeeeec
Confidence 9999999 9999999999999996 366 64 699999999999999999998432 23999999
Q ss_pred cCCCCcC
Q 022528 288 LEGPQES 294 (295)
Q Consensus 288 YPGpWQv 294 (295)
||++||+
T Consensus 447 yp~~w~l 453 (505)
T PLN02842 447 YPYRYEL 453 (505)
T ss_pred CCCCeeE
Confidence 9999996
No 3
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=39.43 E-value=42 Score=36.26 Aligned_cols=108 Identities=17% Similarity=0.277 Sum_probs=68.6
Q ss_pred ecChHHHHHHHhhh----------cCCCeeeeeccCCCCcccccCCcccccccccCCCCCeEEEEEecCCCchhHHHHHH
Q 022528 151 FPEANEVKFARKSV----------FEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFLVAYPYFNVNEMLVVEE 220 (295)
Q Consensus 151 FPD~~eaalAr~~~----------f~g~~f~ld~l~k~s~~~~~G~~~r~~~~drv~~eDeifVvv~P~~s~~El~~VEk 220 (295)
|-|--|.++.| +. |++ .+++.-++.|.- .||...+. --+.--|-+.+|+.... .-.++.|.
T Consensus 49 ~~D~~e~EqeR-GITI~saa~s~~~~~-~~~iNlIDTPGH---VDFt~EV~--rslrvlDgavvVvdave--GV~~QTEt 119 (697)
T COG0480 49 TMDWMEQEQER-GITITSAATTLFWKG-DYRINLIDTPGH---VDFTIEVE--RSLRVLDGAVVVVDAVE--GVEPQTET 119 (697)
T ss_pred cCCCcHHHHhc-CCEEeeeeeEEEEcC-ceEEEEeCCCCc---cccHHHHH--HHHHhhcceEEEEECCC--CeeecHHH
Confidence 57777777777 42 665 223333444432 23343222 12334466777774333 34669999
Q ss_pred HHHHhhhCCCeeEEEEccchhhhhcCCCCCccchHHHHHHHhhccCcceEEEE
Q 022528 221 LYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYYI 273 (295)
Q Consensus 221 l~e~~~~~~~rPlVl~N~eLd~vR~gy~p~~F~p~~r~L~~rFLs~fe~VYYl 273 (295)
++.++. ..+.|.|+|-+.+|+++.+|+.. ..+++.+|.....++...
T Consensus 120 v~rqa~-~~~vp~i~fiNKmDR~~a~~~~~-----~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 120 VWRQAD-KYGVPRILFVNKMDRLGADFYLV-----VEQLKERLGANPVPVQLP 166 (697)
T ss_pred HHHHHh-hcCCCeEEEEECccccccChhhh-----HHHHHHHhCCCceeeecc
Confidence 998822 34568888888999999888642 699999999988777764
No 4
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=37.23 E-value=28 Score=24.02 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHHHHHc
Q 022528 78 SDYSELLDQAKMAAELAVKD 97 (295)
Q Consensus 78 ~sy~e~v~QA~~Av~~AL~D 97 (295)
.|++|+++.+++|+...|+|
T Consensus 29 ~t~eea~~~~~eal~~~le~ 48 (48)
T PF03681_consen 29 DTLEEALENAKEALELWLED 48 (48)
T ss_dssp SSHHHHHHHHHHHHHHHCT-
T ss_pred CCHHHHHHHHHHHHHHHhhC
Confidence 48999999999999988764
No 5
>TIGR00057 Sua5/YciO/YrdC/YwlC family protein. partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.
Probab=34.10 E-value=92 Score=27.94 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhCCCeeEEEEccchhhhhcCCCCCccchHHHHHHHhhccC
Q 022528 215 MLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPV 266 (295)
Q Consensus 215 l~~VEkl~e~~~~~~~rPlVl~N~eLd~vR~gy~p~~F~p~~r~L~~rFLs~ 266 (295)
-..||+||+.-....++|++++=..++.+. .|. .+++..++|-++|.+.
T Consensus 41 ~~av~ri~~iK~R~~~Kpl~~l~~~~~~l~-~~~--~~~~~~~~l~~~~~Pg 89 (201)
T TIGR00057 41 EDAVRRLYRIKGRPSNKPLTVLVSDLSEIE-KYA--YVPDDAKRLMKKFWPG 89 (201)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEECCHHHHH-HHh--cCCHHHHHHHHhcCCC
Confidence 457888887743455788999888888763 333 1455567777777765
No 6
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=31.64 E-value=27 Score=29.56 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.9
Q ss_pred ccccccCCCCCCCCcCCCCCCCHHHHH
Q 022528 58 LTNSVSSDGNNSINVDVPFPSDYSELL 84 (295)
Q Consensus 58 ~~~~~~g~~~~~~~~~~~~P~sy~e~v 84 (295)
.++||.|+.+-+...+++.|.|+.+++
T Consensus 85 ~P~GNtG~anV~~f~pmpip~dl~~~l 111 (112)
T PF12487_consen 85 VPVGNTGGANVSPFKPMPIPEDLQALL 111 (112)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHh
Confidence 678999998888888999999998876
No 7
>PRK11630 hypothetical protein; Provisional
Probab=31.15 E-value=1.2e+02 Score=27.53 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhhhCCCeeEEEEccchhhhhcCCCCCccchHHHHHHHhhccCcce
Q 022528 214 EMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMET 269 (295)
Q Consensus 214 El~~VEkl~e~~~~~~~rPlVl~N~eLd~vR~gy~p~~F~p~~r~L~~rFLs~fe~ 269 (295)
--..|++||+.-....++|++++=..++.+. .|.- .++..++|.++|.+.=-|
T Consensus 46 n~~Av~~l~~lK~R~~~Kpl~ll~~~~~~~~-~~~~--~~~~~~~l~~~~wPGplT 98 (206)
T PRK11630 46 DKNAMERICRIRQLPDGHNFTLMCRDLSELS-TYSF--VDNVAFRLMKNNTPGNYT 98 (206)
T ss_pred CHHHHHHHHHHcCCCCCCCeEEEECCHHHHH-HHhc--CCHHHHHHHHhcCCCCeE
Confidence 3568889888744567889999988888874 3442 244567777777764444
No 8
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=30.30 E-value=78 Score=29.42 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=30.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEccc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGE 239 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~e 239 (295)
+.++++.|.+....-..+.++|+.+..+.+.|+|+.|--
T Consensus 98 d~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 98 DAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred eEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 457777787755555678888888777899999999963
No 9
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=30.15 E-value=66 Score=25.23 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCce
Q 022528 76 FPSDYSELLDQAKMAAELAVKDGMKL 101 (295)
Q Consensus 76 ~P~sy~e~v~QA~~Av~~AL~DG~~l 101 (295)
-..+++++++.|..|.+.|-+.|.++
T Consensus 136 ~~~~~~~ll~~a~~al~~ak~~g~n~ 161 (161)
T PF00990_consen 136 DGQDADELLKKADQALQEAKEQGRNQ 161 (161)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45799999999999999999999763
No 10
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=27.72 E-value=1.1e+02 Score=27.14 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=45.1
Q ss_pred HHHHHhhcCCCCCCceEEEEecChHHHHHHHhhhcCCCeeeeeccCCCCcccccCCcc-cccccccCCCCCeEEEEEecC
Q 022528 131 ICEFCDLFVTPEKVTRTRIFFPEANEVKFARKSVFEGASFKLDYLTKPSFFEDFGFTE-KVKMADRVKLEDELFLVAYPY 209 (295)
Q Consensus 131 ar~f~~~f~~~~~g~rvri~FPD~~eaalAr~~~f~g~~f~ld~l~k~s~~~~~G~~~-r~~~~drv~~eDeifVvv~P~ 209 (295)
++.+++.+.....+.++-+=.--...++.|++ .+.+.. .+-|+. +|+-. -....+.++| +++|++-
T Consensus 37 ~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~-~~~~~v-~~~~~P-------~D~~~~~~rfl~~~~P--~~~i~~E-- 103 (186)
T PF04413_consen 37 ARPLIKRLRKQRPDLRILLTTTTPTGREMARK-LLPDRV-DVQYLP-------LDFPWAVRRFLDHWRP--DLLIWVE-- 103 (186)
T ss_dssp HHHHHHHHTT---TS-EEEEES-CCHHHHHHG-G-GGG--SEEE----------SSHHHHHHHHHHH----SEEEEES--
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCchHHHHHH-hCCCCe-EEEEeC-------ccCHHHHHHHHHHhCC--CEEEEEc--
Confidence 44455555322234455555554455666664 443311 121211 12111 0112344566 6677772
Q ss_pred CCchhHHHHHHHHHHhhhCCCeeEEEEccchhhhh-cCCCCCccchHHHHHHHhhccCcceEEEE
Q 022528 210 FNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIR-SGYYPSFFYPKLAALSKTLFPVMETIYYI 273 (295)
Q Consensus 210 ~s~~El~~VEkl~e~~~~~~~rPlVl~N~eLd~vR-~gy~p~~F~p~~r~L~~rFLs~fe~VYYl 273 (295)
+.=++++=..+.+ .+.|++|+|++|..-. .+|. ..+.+.+..|+.|..++--
T Consensus 104 --tElWPnll~~a~~----~~ip~~LvNarls~~s~~~~~------~~~~~~r~~l~~f~~i~aq 156 (186)
T PF04413_consen 104 --TELWPNLLREAKR----RGIPVVLVNARLSERSFRRYR------RFPFLFRPLLSRFDRILAQ 156 (186)
T ss_dssp ------HHHHHH---------S-EEEEEE--------------------HHHHHHGGG-SEEEES
T ss_pred --cccCHHHHHHHhh----cCCCEEEEeeeeccccchhhh------hhHHHHHHHHHhCCEEEEC
Confidence 1224444443333 5789999999998743 3332 3466778888999888754
No 11
>PF13466 STAS_2: STAS domain
Probab=24.28 E-value=2.9e+02 Score=20.17 Aligned_cols=65 Identities=11% Similarity=0.150 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHcCCceEEEeecCCCCCCCCCCCCCcccccchHHHHHHHHhhcCCCCCCceEEEEecChHHHHHHH
Q 022528 83 LLDQAKMAAELAVKDGMKLMEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTRIFFPEANEVKFAR 161 (295)
Q Consensus 83 ~v~QA~~Av~~AL~DG~~llEVEFP~~~~~s~~Gd~eg~ie~n~~~~lar~f~~~f~~~~~g~rvri~FPD~~eaalAr 161 (295)
.+.+..++.+.++++| ..+.|+|-... .++... ++++..+.+... ..|.++++.-|-..-.++.+
T Consensus 11 ~~~~l~~~l~~~~~~~-~~v~lDls~v~----------~iDsag-l~lL~~~~~~~~--~~g~~~~l~~~~~~~~~ll~ 75 (80)
T PF13466_consen 11 TAPELRQALQALLASG-RPVVLDLSGVE----------FIDSAG-LQLLLAAARRAR--ARGRQLRLTGPSPALRRLLE 75 (80)
T ss_pred HHHHHHHHHHHHHcCC-CeEEEECCCCC----------eecHHH-HHHHHHHHHHHH--HCCCeEEEEcCCHHHHHHHH
Confidence 4557778888888889 89999998772 223322 777777777774 57788888877776555544
No 12
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=23.97 E-value=3.6e+02 Score=26.43 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=55.1
Q ss_pred cchHHHHHHHHhhcCCCCCCceEEEEecChHHHHHHHhhhcCCCeeeeeccCCCCcccccCCcccccccccCCCCCeEEE
Q 022528 125 TGSMRLICEFCDLFVTPEKVTRTRIFFPEANEVKFARKSVFEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFL 204 (295)
Q Consensus 125 n~~~~lar~f~~~f~~~~~g~rvri~FPD~~eaalAr~~~f~g~~f~ld~l~k~s~~~~~G~~~r~~~~drv~~eDeifV 204 (295)
|++-+++..+++.|. +.|.++=+..|-=++++.+-+ ..+....++.... |+ .++.. +...+..+.++++
T Consensus 82 nGsde~i~~l~~~~~--~~gd~vl~~~Ptf~~Y~~~a~-~~g~~~~~v~~~~----~~-~d~~~---~~~~~~~~~~lv~ 150 (356)
T COG0079 82 NGSDELIELLVRAFV--EPGDTVLIPEPTFSMYEIAAQ-LAGAEVVKVPLKE----FR-LDLDA---ILAAIRDKTKLVF 150 (356)
T ss_pred CChHHHHHHHHHHhh--cCCCEEEEcCCChHHHHHHHH-hcCCeEEEecccc----cc-cCHHH---HHHhhhcCCCEEE
Confidence 344566777788886 456667676677777777774 4333333332111 11 11111 2233444568899
Q ss_pred EEecCCCchhHH---HHHHHHHHhhhCCCeeEEEEccc
Q 022528 205 VAYPYFNVNEML---VVEELYKEAVFNTAWKLIIFNGE 239 (295)
Q Consensus 205 vv~P~~s~~El~---~VEkl~e~~~~~~~rPlVl~N~e 239 (295)
+++||..|..+. .++++.+. .+..-+|++--.
T Consensus 151 i~nPNNPTG~~~~~~~l~~l~~~---~~~~~~vVvDEA 185 (356)
T COG0079 151 LCNPNNPTGTLLPREELRALLEA---LPEGGLVVIDEA 185 (356)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHh---CCCCcEEEEeCc
Confidence 998987555544 56666555 333445554433
No 13
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=22.26 E-value=2.7e+02 Score=26.16 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=38.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEccchhhhhcCCCCCccchHHHHHHHhhccCcceEEEEe
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYYIH 274 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~eLd~vR~gy~p~~F~p~~r~L~~rFLs~fe~VYYlr 274 (295)
+..+++.|++....-..+-++|+.+..+.+.|+|+.| |.|+- ++| ++-.++...+..|-.|+
T Consensus 101 dav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn------~~g~~---l~~---~~~~~La~~~~nvvgiK 162 (296)
T TIGR03249 101 DGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ------RDNAV---LNA---DTLERLADRCPNLVGFK 162 (296)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe------CCCCC---CCH---HHHHHHHhhCCCEEEEE
Confidence 4567777877433336677777776667789999999 23431 223 34444454566666664
No 14
>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional
Probab=21.87 E-value=1.8e+02 Score=26.04 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=40.5
Q ss_pred CCeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEccchhhhhcCCCCC-ccchHHHHHHHhhccCcce
Q 022528 199 EDELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPS-FFYPKLAALSKTLFPVMET 269 (295)
Q Consensus 199 eDeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~eLd~vR~gy~p~-~F~p~~r~L~~rFLs~fe~ 269 (295)
.|.+|-+++ +..--..||+||+.-....++|++++=..++.+. .|.-. .+++..+++.++|.+.=-|
T Consensus 27 TdTvYgL~~---~~~n~~Av~ri~~iK~R~~~Kpl~ll~~~~~~l~-~~~~~~~~~~~~~~l~~~~wPGPlT 94 (190)
T PRK10634 27 TEAVFGVGC---DPDSETAVMRLLELKQRPVDKGLILIAANYEQLK-PYIDDSMLTDAQRETIFSCWPGPVT 94 (190)
T ss_pred CCchhhhhc---CCCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHH-HHHHhcCCCHHHHHHHHHhCCCCEE
Confidence 355555543 2233468899988744456889999988888763 33211 1344456777777765444
No 15
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=21.56 E-value=6e+02 Score=25.93 Aligned_cols=178 Identities=15% Similarity=0.120 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEeecCCCCCCCCCCCCCcccccchHHHHHHHHhhcCCCCCCceEE--EEecChH
Q 022528 78 SDYSELLDQAKMAAELAVKDGMKLMEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTR--IFFPEAN 155 (295)
Q Consensus 78 ~sy~e~v~QA~~Av~~AL~DG~~llEVEFP~~~~~s~~Gd~eg~ie~n~~~~lar~f~~~f~~~~~g~rvr--i~FPD~~ 155 (295)
.++-+++.-... ...|+.+.+++.|+||+.-+...+|-.=| ++-.|+++.....+--++-+| +=++-..
T Consensus 81 ~~l~~llt~i~G--~~sl~~~irL~Di~lP~~~~~~f~GP~fG-------i~G~R~~lgv~~RPL~~tiiKP~~GLsp~~ 151 (407)
T PRK09549 81 PDLPAILTTTFG--KLSLDGEVKLIDLTFSDELKRHFPGPKFG-------IDGIRNLLGVHDRPLLMSIFKGVIGRDLDY 151 (407)
T ss_pred cCHHHHHHHHhc--ccccccceEEEEecCCHHHHhcCCCCCCC-------chhHHHHhCCCCCceEEEeecCccCCCHHH
Confidence 356677775444 55667789999999999755555555433 233566655443222232222 1122233
Q ss_pred HHHHHHhhhcCCCee-eeeccCC-CCcccccCCccccc----ccccCCCC--CeEEEEEecCCCchhHHHHHHHHHHhhh
Q 022528 156 EVKFARKSVFEGASF-KLDYLTK-PSFFEDFGFTEKVK----MADRVKLE--DELFLVAYPYFNVNEMLVVEELYKEAVF 227 (295)
Q Consensus 156 eaalAr~~~f~g~~f-~ld~l~k-~s~~~~~G~~~r~~----~~drv~~e--DeifVvv~P~~s~~El~~VEkl~e~~~~ 227 (295)
-+++|.+-+-+|+.| |-|.+.. +.| .-|.+|++ .-++.+.+ ....-.+|=+..+.||..=-++..+
T Consensus 152 ~a~~~y~~~~GGvD~IKDDE~l~~q~~---~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~em~~ra~~a~~--- 225 (407)
T PRK09549 152 LKEQLRDQALGGVDLVKDDEILFENAL---TPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTGRTFELKEKAKRAAE--- 225 (407)
T ss_pred HHHHHHHHHhcCCcceecCcCCCCCCC---cCHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCHHHHHHHHHHHHH---
Confidence 356666534466654 2232211 111 11223332 11222222 2222233324444455433333332
Q ss_pred CCCeeEEEEccchhhhhcCCCCCccchHHHHHHHhhccCcceEEEEeecCCCCceeEEe
Q 022528 228 NTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYYIHNFKGRNGGTLFR 286 (295)
Q Consensus 228 ~~~rPlVl~N~eLd~vR~gy~p~~F~p~~r~L~~rFLs~fe~VYYlrn~~g~~~GaLFR 286 (295)
.+-+.||+|.-+ .||. .++.|++. -...-++.+=|++. |++.|
T Consensus 226 -~G~~~~m~~~~~----~G~~------al~~l~~~-~~~~lpIhaHra~~----ga~~r 268 (407)
T PRK09549 226 -AGADALLFNVFA----YGLD------VLQSLAED-PEIPVPIMAHPAVS----GAYTP 268 (407)
T ss_pred -cCCCeEEEeccc----cchH------HHHHHHhc-CCCCcEEEecCCcc----ccccc
Confidence 456899999865 4553 36788764 11123344444444 45554
No 16
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=20.61 E-value=6.3e+02 Score=25.76 Aligned_cols=159 Identities=15% Similarity=0.126 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEEeecCCCCCCCCCCCCCcccccchHHHHHHHHhhcCCCCCCceEE--EEecChHH
Q 022528 79 DYSELLDQAKMAAELAVKDGMKLMEIEFPTAGLDSVPGDSEGGIEMTGSMRLICEFCDLFVTPEKVTRTR--IFFPEANE 156 (295)
Q Consensus 79 sy~e~v~QA~~Av~~AL~DG~~llEVEFP~~~~~s~~Gd~eg~ie~n~~~~lar~f~~~f~~~~~g~rvr--i~FPD~~e 156 (295)
++-+++.-.-. ...++.+.+++.|+||+.-+...+|-.=| ++-.|+++.....+--++-+| +=.+-+--
T Consensus 87 ~l~~llt~i~G--~~sl~~~irL~Di~~P~~~~~~F~GP~fG-------I~G~R~~lgv~~RPL~~tiiKp~~Gl~~~~~ 157 (407)
T TIGR03332 87 DLPALLTTTFG--KLSLDGEVKLIDLEFSDEFKRHFPGPKFG-------IDGIRKLLGVHERPLLMSIFKGMIGRDLGYL 157 (407)
T ss_pred CHHHHHHHHhc--chhcccceEEEEecCCHHHHhcCCCCCCC-------chHHHHHhCCCCCceeEeEeCCccCCCHHHH
Confidence 56666665544 55667789999999999755555555433 334566666443333344444 11122223
Q ss_pred HHHHHhhhcCCCeee-eeccCCCCcccccCCcccccc----cccCCCC--CeEEEEEecCCCchhHHHHHHHHHHhhhCC
Q 022528 157 VKFARKSVFEGASFK-LDYLTKPSFFEDFGFTEKVKM----ADRVKLE--DELFLVAYPYFNVNEMLVVEELYKEAVFNT 229 (295)
Q Consensus 157 aalAr~~~f~g~~f~-ld~l~k~s~~~~~G~~~r~~~----~drv~~e--DeifVvv~P~~s~~El~~VEkl~e~~~~~~ 229 (295)
+++|.+-+-+|+.|- -|....+--| .-|.+|++. -++++.+ ....-.+|=+..+.||..=-++.. ..
T Consensus 158 A~~~y~~~~GGvD~IKDDE~l~dq~~--~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~em~~ra~~a~----~~ 231 (407)
T TIGR03332 158 KEQLRQQALGGVDLVKDDEILFETGL--APFEKRITEGKEVLQEVYEQTGHKTLYAVNLTGRTFDLKDKAKRAA----EL 231 (407)
T ss_pred HHHHHHHhccCcccccCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCcceEeecCCCCHHHHHHHHHHHH----Hh
Confidence 556665333666532 2222111011 112233321 1222222 222233332444445442222222 24
Q ss_pred CeeEEEEccchhhhhcCCCCCccchHHHHHHHh
Q 022528 230 AWKLIIFNGELDRIRSGYYPSFFYPKLAALSKT 262 (295)
Q Consensus 230 ~rPlVl~N~eLd~vR~gy~p~~F~p~~r~L~~r 262 (295)
+-..||+|.-+. ||. .++.|++.
T Consensus 232 G~~~~mv~~~~~----G~~------~~~~l~~~ 254 (407)
T TIGR03332 232 GADVLLFNVFAY----GLD------VLQSLAED 254 (407)
T ss_pred CCCEEEEecccc----ChH------HHHHHHhc
Confidence 568999998773 553 36788774
Done!