Query 022528
Match_columns 295
No_of_seqs 91 out of 102
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 06:57:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqe_K 30S ribosomal protein S 33.1 71 0.0024 26.2 5.5 32 78-109 56-87 (129)
2 3kwr_A Putative RNA-binding pr 32.2 41 0.0014 26.3 3.6 26 78-109 37-62 (97)
3 1xky_A Dihydrodipicolinate syn 30.5 52 0.0018 29.9 4.6 39 200-238 108-146 (301)
4 1o5k_A DHDPS, dihydrodipicolin 30.4 52 0.0018 29.9 4.6 38 201-238 109-146 (306)
5 2ojp_A DHDPS, dihydrodipicolin 30.0 56 0.0019 29.4 4.7 39 200-238 97-135 (292)
6 3l21_A DHDPS, dihydrodipicolin 30.0 54 0.0019 29.8 4.7 38 201-238 112-149 (304)
7 3r8n_K 30S ribosomal protein S 29.9 79 0.0027 25.5 5.1 32 78-109 46-77 (117)
8 3d0c_A Dihydrodipicolinate syn 29.5 41 0.0014 30.8 3.8 38 200-237 107-144 (314)
9 3eb2_A Putative dihydrodipicol 29.1 50 0.0017 30.0 4.3 38 201-238 101-138 (300)
10 2v9d_A YAGE; dihydrodipicolini 27.9 60 0.0021 30.2 4.7 38 201-238 128-165 (343)
11 2ehh_A DHDPS, dihydrodipicolin 27.4 52 0.0018 29.7 4.0 39 200-238 96-134 (294)
12 3si9_A DHDPS, dihydrodipicolin 27.4 51 0.0018 30.2 4.0 38 201-238 119-156 (315)
13 2yxg_A DHDPS, dihydrodipicolin 27.3 53 0.0018 29.5 4.0 39 200-238 96-134 (289)
14 3tak_A DHDPS, dihydrodipicolin 26.7 54 0.0019 29.5 4.0 38 201-238 98-135 (291)
15 3flu_A DHDPS, dihydrodipicolin 26.6 54 0.0019 29.6 4.0 39 200-238 103-141 (297)
16 3icl_A EAL/ggdef domain protei 26.5 69 0.0023 24.8 4.2 27 78-104 133-159 (171)
17 3m5v_A DHDPS, dihydrodipicolin 26.3 56 0.0019 29.6 4.0 38 201-238 105-142 (301)
18 2vc6_A MOSA, dihydrodipicolina 26.1 57 0.0019 29.4 4.0 39 200-238 96-134 (292)
19 3cpr_A Dihydrodipicolinate syn 25.9 57 0.0019 29.6 4.0 39 200-238 112-150 (304)
20 3h5d_A DHDPS, dihydrodipicolin 25.3 73 0.0025 29.1 4.7 38 201-238 105-142 (311)
21 3qyy_A Response regulator; C-D 25.2 82 0.0028 24.4 4.4 27 78-104 139-165 (167)
22 3qze_A DHDPS, dihydrodipicolin 24.6 60 0.0021 29.7 4.0 38 201-238 120-157 (314)
23 1w3i_A EDA, 2-keto-3-deoxy glu 24.5 64 0.0022 29.1 4.1 39 200-238 92-131 (293)
24 2rfg_A Dihydrodipicolinate syn 24.1 55 0.0019 29.7 3.5 38 201-238 97-134 (297)
25 2hmc_A AGR_L_411P, dihydrodipi 23.5 67 0.0023 30.0 4.1 39 201-239 120-160 (344)
26 2r8w_A AGR_C_1641P; APC7498, d 23.2 58 0.002 30.1 3.6 38 201-238 131-168 (332)
27 2r91_A 2-keto-3-deoxy-(6-phosp 23.0 58 0.002 29.2 3.5 39 200-238 91-130 (286)
28 1f6k_A N-acetylneuraminate lya 22.9 56 0.0019 29.4 3.3 38 201-238 101-138 (293)
29 2nuw_A 2-keto-3-deoxygluconate 22.8 58 0.002 29.3 3.4 40 199-238 91-131 (288)
30 3daq_A DHDPS, dihydrodipicolin 22.6 56 0.0019 29.4 3.3 39 201-239 99-137 (292)
31 3hhl_A RPA0582; alpha-beta-bar 22.5 41 0.0014 27.8 2.2 20 216-238 11-30 (143)
32 3na8_A Putative dihydrodipicol 22.4 60 0.002 29.8 3.5 38 201-238 121-158 (315)
33 3e96_A Dihydrodipicolinate syn 21.8 49 0.0017 30.2 2.8 38 201-238 108-145 (316)
34 3a5f_A Dihydrodipicolinate syn 21.7 55 0.0019 29.5 3.0 39 200-238 97-135 (291)
35 2wkj_A N-acetylneuraminate lya 20.2 68 0.0023 29.1 3.3 38 201-238 108-146 (303)
36 3u5c_O RP59A, 40S ribosomal pr 20.1 2.1E+02 0.0072 23.7 6.1 31 78-108 55-85 (137)
No 1
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=33.14 E-value=71 Score=26.23 Aligned_cols=32 Identities=19% Similarity=0.045 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEeecCC
Q 022528 78 SDYSELLDQAKMAAELAVKDGMKLMEIEFPTA 109 (295)
Q Consensus 78 ~sy~e~v~QA~~Av~~AL~DG~~llEVEFP~~ 109 (295)
+++..|..-|..+++.|.+-|.+.+||.+--+
T Consensus 56 ~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~ 87 (129)
T 2vqe_K 56 GTPYAAQLAALDAAKKAMAYGMQSVDVIVRGT 87 (129)
T ss_dssp GSHHHHHHHHHHHHHHHHTTTCCEEEEEEESC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCeEEEEEEECC
Confidence 56777777888899999999999999999655
No 2
>3kwr_A Putative RNA-binding protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS binding protein; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=32.15 E-value=41 Score=26.32 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEeecCC
Q 022528 78 SDYSELLDQAKMAAELAVKDGMKLMEIEFPTA 109 (295)
Q Consensus 78 ~sy~e~v~QA~~Av~~AL~DG~~llEVEFP~~ 109 (295)
.|++||++.|++|....|.+=. +|.+
T Consensus 37 dT~eEAl~nA~EAL~~~Le~~~------iP~P 62 (97)
T 3kwr_A 37 ASVQVAADNAANALAIALFEQS------LPPA 62 (97)
T ss_dssp SSHHHHHHHHHHHHHHHHTTSC------CCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhCc------CCCC
Confidence 3799999999999999999743 7776
No 3
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=30.52 E-value=52 Score=29.87 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=29.8
Q ss_pred CeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 200 DELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 200 DeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
=+..+++.|+++...-..+.++|+.+..+.+.|+|+.|-
T Consensus 108 adavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 146 (301)
T 1xky_A 108 VDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNV 146 (301)
T ss_dssp CSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 356888889885544467778888877778999999994
No 4
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=30.41 E-value=52 Score=29.92 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=29.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++...-..+.++|+.+..+.+.|+|+.|-
T Consensus 109 davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 146 (306)
T 1o5k_A 109 NGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNV 146 (306)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 56788889886544567888888877778999999994
No 5
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=30.02 E-value=56 Score=29.40 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=30.5
Q ss_pred CeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 200 DELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 200 DeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
=+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-
T Consensus 97 adavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (292)
T 2ojp_A 97 IVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNV 135 (292)
T ss_dssp CSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECC
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 367888889886545567788888877778899999994
No 6
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=29.96 E-value=54 Score=29.84 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=30.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-
T Consensus 112 davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 149 (304)
T 3l21_A 112 HGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDI 149 (304)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEEC
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 56788888876555567788888877778999999995
No 7
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=29.86 E-value=79 Score=25.50 Aligned_cols=32 Identities=19% Similarity=0.096 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEeecCC
Q 022528 78 SDYSELLDQAKMAAELAVKDGMKLMEIEFPTA 109 (295)
Q Consensus 78 ~sy~e~v~QA~~Av~~AL~DG~~llEVEFP~~ 109 (295)
+++..+..-|..+.+.|.+-|.+.+||.+=-+
T Consensus 46 ~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vkG~ 77 (117)
T 3r8n_K 46 STPFAAQVAAERCADAVKEYGIKNLEVMVKGP 77 (117)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCCCEEEEEEECS
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEEEeCC
Confidence 45666766777889999999999999999544
No 8
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=29.51 E-value=41 Score=30.82 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=28.9
Q ss_pred CeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEc
Q 022528 200 DELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFN 237 (295)
Q Consensus 200 DeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N 237 (295)
=+..+++.|+++...-..+.++|+.+..+.+.|+|+.|
T Consensus 107 adavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 107 ADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp CSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 35678888987544446677778876667789999999
No 9
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=29.07 E-value=50 Score=29.96 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=29.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-
T Consensus 101 davlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 138 (300)
T 3eb2_A 101 DGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTN 138 (300)
T ss_dssp SEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 66788889876544566777888877677899999993
No 10
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=27.89 E-value=60 Score=30.20 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=29.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++..--..+.++|+.+..+.+.|||+.|-
T Consensus 128 davlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 165 (343)
T 2v9d_A 128 DGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNF 165 (343)
T ss_dssp SEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 56788889886444567778888877778999999994
No 11
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=27.37 E-value=52 Score=29.66 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=29.5
Q ss_pred CeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 200 DELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 200 DeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
=+..+++.|+++...-..+.++|+.+..+.+.|+|+.|-
T Consensus 96 adavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 134 (294)
T 2ehh_A 96 ADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNI 134 (294)
T ss_dssp CSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 366888889886444567777787766677899999993
No 12
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=27.35 E-value=51 Score=30.25 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=29.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-
T Consensus 119 davlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 156 (315)
T 3si9_A 119 DAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNI 156 (315)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeC
Confidence 56788888875444467778888877778999999995
No 13
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=27.34 E-value=53 Score=29.54 Aligned_cols=39 Identities=13% Similarity=0.276 Sum_probs=29.3
Q ss_pred CeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 200 DELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 200 DeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
=+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-
T Consensus 96 adavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 134 (289)
T 2yxg_A 96 ADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNV 134 (289)
T ss_dssp CSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 356788889886444567777787766677899999994
No 14
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=26.68 E-value=54 Score=29.48 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=28.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++...-..+.++|+.+..+.+.|+|+.|-
T Consensus 98 davlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 135 (291)
T 3tak_A 98 DAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNV 135 (291)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 56778888875444456777888877677999999995
No 15
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=26.62 E-value=54 Score=29.62 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=29.1
Q ss_pred CeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 200 DELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 200 DeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
=+..+++.|+++...-..+.++|+.+..+.+.|+|+.|-
T Consensus 103 adavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 141 (297)
T 3flu_A 103 ADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNV 141 (297)
T ss_dssp CSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 366778888875444456777788876677999999995
No 16
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=26.54 E-value=69 Score=24.80 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEE
Q 022528 78 SDYSELLDQAKMAAELAVKDGMKLMEI 104 (295)
Q Consensus 78 ~sy~e~v~QA~~Av~~AL~DG~~llEV 104 (295)
.+.++++++|..|...|-+.|...+.+
T Consensus 133 ~~~~~ll~~A~~Al~~ak~~g~~~~~~ 159 (171)
T 3icl_A 133 ETMEQLLRNADTAMYHAKSRGKNNYQF 159 (171)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 579999999999999999999998876
No 17
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=26.33 E-value=56 Score=29.61 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=28.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-
T Consensus 105 davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 142 (301)
T 3m5v_A 105 DGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNV 142 (301)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 66788888875444467777788766677999999994
No 18
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=26.11 E-value=57 Score=29.36 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=28.7
Q ss_pred CeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 200 DELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 200 DeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
=+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-
T Consensus 96 adavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 134 (292)
T 2vc6_A 96 ADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNI 134 (292)
T ss_dssp CSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 366888889875444456777777766667899999984
No 19
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=25.89 E-value=57 Score=29.65 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=29.3
Q ss_pred CeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 200 DELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 200 DeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
=+..+++.|+++...-..+.++|+.+..+.+.|+|+.|-
T Consensus 112 adavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 150 (304)
T 3cpr_A 112 ADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDI 150 (304)
T ss_dssp CSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 356788889886444567777788766677899999994
No 20
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=25.35 E-value=73 Score=29.13 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=29.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++...-..+.++|+.+..+.+.|+|+.|-
T Consensus 105 davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 142 (311)
T 3h5d_A 105 AAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNI 142 (311)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEEC
T ss_pred cEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEec
Confidence 56777888875544466778888877778999999995
No 21
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=25.18 E-value=82 Score=24.38 Aligned_cols=27 Identities=26% Similarity=0.126 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEE
Q 022528 78 SDYSELLDQAKMAAELAVKDGMKLMEI 104 (295)
Q Consensus 78 ~sy~e~v~QA~~Av~~AL~DG~~llEV 104 (295)
.+.++++++|..|...|-+.|..++.+
T Consensus 139 ~~~~~ll~~A~~Al~~Ak~~g~~~~~~ 165 (167)
T 3qyy_A 139 IDATELYRRADAAMYRAKFSGGRRLVR 165 (167)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCceec
Confidence 689999999999999999999987764
No 22
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=24.62 E-value=60 Score=29.71 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=28.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-
T Consensus 120 davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 157 (314)
T 3qze_A 120 DACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNV 157 (314)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 56778888775444456777788876677999999995
No 23
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=24.55 E-value=64 Score=29.07 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=29.3
Q ss_pred CeEEEEEecCCCc-hhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 200 DELFLVAYPYFNV-NEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 200 DeifVvv~P~~s~-~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
=+..+++.|+++. .--..+.++|+.+..+.+.|+|+.|-
T Consensus 92 adavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~ 131 (293)
T 1w3i_A 92 IVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNY 131 (293)
T ss_dssp CSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 3678888898865 34466777777766667899999994
No 24
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=24.06 E-value=55 Score=29.66 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=28.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-
T Consensus 97 davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 134 (297)
T 2rfg_A 97 DAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNI 134 (297)
T ss_dssp SEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 56788889886444467777787766677899999993
No 25
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=23.51 E-value=67 Score=29.97 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=30.0
Q ss_pred eEEEEEecCCCc-hhHHHHHHHHHHhhh-CCCeeEEEEccc
Q 022528 201 ELFLVAYPYFNV-NEMLVVEELYKEAVF-NTAWKLIIFNGE 239 (295)
Q Consensus 201 eifVvv~P~~s~-~El~~VEkl~e~~~~-~~~rPlVl~N~e 239 (295)
+.++++.|+++. ..-..+.++|+.+.. +.+.|||+.|-=
T Consensus 120 davlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P 160 (344)
T 2hmc_A 120 KGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP 160 (344)
T ss_dssp SEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG
T ss_pred CEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 567788898865 344677788888777 789999999965
No 26
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=23.23 E-value=58 Score=30.14 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=28.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++...-..+.++|+.+..+.+.|+|+.|-
T Consensus 131 davlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 168 (332)
T 2r8w_A 131 DALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNN 168 (332)
T ss_dssp SEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 56788888875544467777787766677899999993
No 27
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=22.96 E-value=58 Score=29.20 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=29.0
Q ss_pred CeEEEEEecCCCc-hhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 200 DELFLVAYPYFNV-NEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 200 DeifVvv~P~~s~-~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
=+..+++.|+++. .--..+.++|+.+..+.+.|+|+.|-
T Consensus 91 adavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~ 130 (286)
T 2r91_A 91 AEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNY 130 (286)
T ss_dssp CSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3567888898765 34456777777766677899999994
No 28
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=22.89 E-value=56 Score=29.42 Aligned_cols=38 Identities=11% Similarity=0.302 Sum_probs=28.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++...-..+.++|+.+..+.+.|+|+.|-
T Consensus 101 davlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 138 (293)
T 1f6k_A 101 DCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSI 138 (293)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 56888889886544567777777766667789999993
No 29
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=22.83 E-value=58 Score=29.28 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=29.6
Q ss_pred CCeEEEEEecCCCc-hhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 199 EDELFLVAYPYFNV-NEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 199 eDeifVvv~P~~s~-~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+=+..+++.|+++. ..-..+.++|+.+..+.+.|+|+.|-
T Consensus 91 Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~ 131 (288)
T 2nuw_A 91 DILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNY 131 (288)
T ss_dssp CCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 34678888898865 34466777777766677899999993
No 30
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=22.59 E-value=56 Score=29.45 Aligned_cols=39 Identities=10% Similarity=0.284 Sum_probs=28.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEccc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGE 239 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~e 239 (295)
+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-=
T Consensus 99 davlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P 137 (292)
T 3daq_A 99 DAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVP 137 (292)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECH
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 567788888754444567777887666679999999943
No 31
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=22.54 E-value=41 Score=27.80 Aligned_cols=20 Identities=10% Similarity=0.085 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhCCCeeEEEEcc
Q 022528 216 LVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 216 ~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
.+++++.+. ..+.||+|+|+
T Consensus 11 ~~~~~~~~~---~~~~pv~MlNL 30 (143)
T 3hhl_A 11 EVFAQFRAN---DREGPIHMLNL 30 (143)
T ss_dssp HHHHHHHHC---CCSSCEEEEEE
T ss_pred HHHHHHHhC---CCCCCEEEEeh
Confidence 466776655 88999999996
No 32
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=22.38 E-value=60 Score=29.75 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=28.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-
T Consensus 121 davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 158 (315)
T 3na8_A 121 EAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNN 158 (315)
T ss_dssp SEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 56778888875444467777888876677899999993
No 33
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=21.80 E-value=49 Score=30.23 Aligned_cols=38 Identities=5% Similarity=0.142 Sum_probs=28.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-
T Consensus 108 davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 145 (316)
T 3e96_A 108 DAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFK 145 (316)
T ss_dssp SEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 56777788876545566777777766667899999993
No 34
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=21.75 E-value=55 Score=29.45 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=28.8
Q ss_pred CeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 200 DELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 200 DeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
=+..+++.|+++..--..+.++|+.+..+.+.|+|+.|-
T Consensus 97 adavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (291)
T 3a5f_A 97 VDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNV 135 (291)
T ss_dssp CSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEEC
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 366888889886544567777888866677899999993
No 35
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=20.21 E-value=68 Score=29.10 Aligned_cols=38 Identities=8% Similarity=0.211 Sum_probs=27.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCC-eeEEEEcc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTA-WKLIIFNG 238 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~-rPlVl~N~ 238 (295)
+..+++.|+++..--..+.++|+.+..+.+ .|+|+.|-
T Consensus 108 davlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~ 146 (303)
T 2wkj_A 108 DAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNI 146 (303)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 567888898754444567777777555556 99999993
No 36
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=20.15 E-value=2.1e+02 Score=23.70 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEeecC
Q 022528 78 SDYSELLDQAKMAAELAVKDGMKLMEIEFPT 108 (295)
Q Consensus 78 ~sy~e~v~QA~~Av~~AL~DG~~llEVEFP~ 108 (295)
++...+..-|+.+++.|.+-|.+.++|.+--
T Consensus 55 sTpyAAq~aa~~~a~~a~e~Gi~~v~V~vra 85 (137)
T 3u5c_O 55 SSPYAAMLAAQDVAAKCKEVGITAVHVKIRA 85 (137)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCEEECEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEEec
Confidence 4556677778889999999999999999943
Done!