Query 022528
Match_columns 295
No_of_seqs 91 out of 102
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 06:57:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022528.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022528hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bv3a2 c.37.1.8 (A:7-282) Elo 42.5 22 0.0016 30.2 6.4 68 197-272 93-160 (276)
2 d1w25a3 d.58.29.2 (A:294-455) 42.5 11 0.00077 27.9 3.8 25 78-102 132-156 (162)
3 d1n0ua2 c.37.1.8 (A:3-343) Elo 28.0 18 0.0013 31.6 3.4 66 197-270 118-183 (341)
4 d2a6na1 c.1.10.1 (A:1-292) Dih 22.9 50 0.0036 27.0 5.1 65 200-274 97-161 (292)
5 d1xkya1 c.1.10.1 (A:1-292) Dih 22.4 44 0.0032 27.2 4.6 40 200-239 99-138 (292)
6 d2dy1a2 c.37.1.8 (A:8-274) Elo 22.1 55 0.004 27.3 5.3 66 197-272 89-154 (267)
7 d1xxxa1 c.1.10.1 (A:5-300) Dih 20.4 51 0.0037 27.1 4.6 64 201-274 104-167 (296)
8 d1o5ka_ c.1.10.1 (A:) Dihydrod 18.7 59 0.0043 26.4 4.6 39 201-239 98-136 (295)
9 d2dsya1 d.304.1.2 (A:3-82) Hyp 17.6 42 0.0031 23.4 2.9 19 78-96 42-60 (80)
10 d1t9ha2 c.37.1.8 (A:68-298) Pr 17.2 91 0.0066 25.6 5.5 41 198-238 10-50 (231)
No 1
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}
Probab=42.51 E-value=22 Score=30.16 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=50.1
Q ss_pred CCCCeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEccchhhhhcCCCCCccchHHHHHHHhhccCcceEEE
Q 022528 197 KLEDELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYY 272 (295)
Q Consensus 197 ~~eDeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~eLd~vR~gy~p~~F~p~~r~L~~rFLs~fe~VYY 272 (295)
..-|-+.|||.+... =-.+.|++|+.+. ..+.|.|+|-++||+-+.+|- --+.+++.+|=.+..++.+
T Consensus 93 ~~~D~avlVvda~~G--v~~~T~~~w~~a~-~~~lP~i~fINKmDr~~ad~~-----~~l~ei~~~l~~~~vp~~~ 160 (276)
T d2bv3a2 93 RVLDGAIVVFDSSQG--VEPQSETVWRQAE-KYKVPRIAFANKMDKTGADLW-----LVIRTMQERLGARPVVMQL 160 (276)
T ss_dssp HHCCEEEEEEETTTS--SCHHHHHHHHHHH-TTTCCEEEEEECTTSTTCCHH-----HHHHHHHHTTCCCEEECEE
T ss_pred HhhhheEEeccccCC--cchhHHHHHHHHH-HcCCCEEEEEecccccccccc-----hhHHHHHHHhCCCeEEEEe
Confidence 344777888865443 2457888888844 458999999999999888862 2358899999877777655
No 2
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
Probab=42.48 E-value=11 Score=27.89 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceE
Q 022528 78 SDYSELLDQAKMAAELAVKDGMKLM 102 (295)
Q Consensus 78 ~sy~e~v~QA~~Av~~AL~DG~~ll 102 (295)
.++++++.+|..|...|-+.|+.++
T Consensus 132 ~~~~~ll~~A~~AL~~AK~~G~n~v 156 (162)
T d1w25a3 132 DTPEALLKRADEGVYQAKASGRNAV 156 (162)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeE
Confidence 6899999999999999999999876
No 3
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.04 E-value=18 Score=31.63 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=44.3
Q ss_pred CCCCeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEccchhhhhcCCCCCccchHHHHHHHhhccCcceE
Q 022528 197 KLEDELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETI 270 (295)
Q Consensus 197 ~~eDeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~eLd~vR~gy~p~~F~p~~r~L~~rFLs~fe~V 270 (295)
..-|-+.|||.... .=..+.|++++++. ....|+|++-..+|+++.++..+ ..+++++|-..+++|
T Consensus 118 ~~~D~allVVda~e--Gv~~qT~~~~~~a~-~~~~p~i~viNKiDr~~~el~~~-----~~~~~~~l~~~i~~v 183 (341)
T d1n0ua2 118 RVTDGALVVVDTIE--GVCVQTETVLRQAL-GERIKPVVVINKVDRALLELQVS-----KEDLYQTFARTVESV 183 (341)
T ss_dssp HTCSEEEEEEETTT--BSCHHHHHHHHHHH-HTTCEEEEEEECHHHHHHTSCCC-----HHHHHHHHHHHHHHH
T ss_pred hhcCceEEEEeccc--CcchhHHHHHHHHH-HcCCCeEEEEECcccccccHHhh-----HHHHHHHHcCccccc
Confidence 34477888884322 23557888887743 45678888888999999888643 377777776544443
No 4
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}
Probab=22.88 E-value=50 Score=26.99 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=41.8
Q ss_pred CeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEccchhhhhcCCCCCccchHHHHHHHhhccCcceEEEEe
Q 022528 200 DELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYYIH 274 (295)
Q Consensus 200 DeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~eLd~vR~gy~p~~F~p~~r~L~~rFLs~fe~VYYlr 274 (295)
-+.++++.|.+...--..+.++++.+..+.+.|+++.|.-- . .|+. +.+ ++-.+ |.++..|-.|+
T Consensus 97 ad~~~~~pP~~~~~~~~~i~~~f~~v~~~~~~pi~iYn~P~-~--~g~~---~~~---e~~~~-L~~~pnv~giK 161 (292)
T d2a6na1 97 IVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPS-A--TGCD---LLP---ETVGR-LAKVKNIIGIK 161 (292)
T ss_dssp CCEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHH-H--HSCC---CCH---HHHHH-HHTSTTEEEEE
T ss_pred CcceeccCCCCCCCCHHHHHHHHHHHhhccCCcEEEEEecc-c--cCCc---cCH---HHHHH-HhcCCCEEEEE
Confidence 46777888876544456778888887778899999998421 1 2332 122 33334 34577777775
No 5
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}
Probab=22.37 E-value=44 Score=27.23 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=28.8
Q ss_pred CeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEccc
Q 022528 200 DELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGE 239 (295)
Q Consensus 200 DeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~e 239 (295)
=+.++++.|..-...-..+.++++.+..+.+.|+|+.|.-
T Consensus 99 ad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~pi~iYn~P 138 (292)
T d1xkya1 99 VDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVP 138 (292)
T ss_dssp CSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECH
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 3567777776533344667778888777788999999853
No 6
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=22.09 E-value=55 Score=27.28 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=43.9
Q ss_pred CCCCeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEccchhhhhcCCCCCccchHHHHHHHhhccCcceEEE
Q 022528 197 KLEDELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYY 272 (295)
Q Consensus 197 ~~eDeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~eLd~vR~gy~p~~F~p~~r~L~~rFLs~fe~VYY 272 (295)
..-|-+.|||-... .-..+.|++++.+. ....|.|++..++|+- .+| ...+.+++++|- ...|+.|
T Consensus 89 ~~~D~avlvvda~~--Gv~~~t~~~~~~~~-~~~~p~~i~iNk~D~~-~~~-----~~~l~~~~~~lg-~~vp~~~ 154 (267)
T d2dy1a2 89 EAADAALVAVSAEA--GVQVGTERAWTVAE-RLGLPRMVVVTKLDKG-GDY-----YALLEDLRSTLG-PILPIDL 154 (267)
T ss_dssp HHCSEEEEEEETTT--CSCHHHHHHHHHHH-HTTCCEEEEEECGGGC-CCH-----HHHHHHHHHHHC-SEEECEE
T ss_pred cccCceEEEeeccC--CccchhHHHHHhhh-hccccccccccccccc-ccc-----hhhhhhHHHHhc-cCcCeEe
Confidence 34477777774332 34557888887733 3468899999999973 343 345789999996 4555544
No 7
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.38 E-value=51 Score=27.05 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=41.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEccchhhhhcCCCCCccchHHHHHHHhhccCcceEEEEe
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPVMETIYYIH 274 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~eLd~vR~gy~p~~F~p~~r~L~~rFLs~fe~VYYlr 274 (295)
+.++++.|......-..+.++++.+..+.+.|+++.|.--- .|+.. .+ ++-++.. ++..|-+|+
T Consensus 104 d~v~i~~P~~~~~~~~~l~~~~~~v~~~~~~pi~lYn~p~~---~g~~~---~~---~~~~~L~-~~p~i~giK 167 (296)
T d1xxxa1 104 HGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGR---SAVPI---EP---DTIRALA-SHPNIVGVK 167 (296)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHH---HSSCC---CH---HHHHHHH-TSTTEEEEE
T ss_pred CeEEEEeccCCCCCHHHHHHHHHHHHHhcCCCEEEEECccc---cCCCC---CH---HHHHHhc-CCCCeeeec
Confidence 45677778764444567888899977788999999985532 23321 22 3333333 567777775
No 8
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=18.67 E-value=59 Score=26.36 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=28.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEccc
Q 022528 201 ELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNGE 239 (295)
Q Consensus 201 eifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~e 239 (295)
+.++++.|.+...--..+.++++.+..+.+.|+++.|.-
T Consensus 98 d~v~v~pP~y~~~s~~~i~~~~~~ia~a~~~pi~iYn~P 136 (295)
T d1o5ka_ 98 NGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVP 136 (295)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECH
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHhccCCCeeEEecc
Confidence 456667776533334578888888877899999999754
No 9
>d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus thermophilus [TaxId: 274]}
Probab=17.64 E-value=42 Score=23.37 Aligned_cols=19 Identities=16% Similarity=-0.052 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 022528 78 SDYSELLDQAKMAAELAVK 96 (295)
Q Consensus 78 ~sy~e~v~QA~~Av~~AL~ 96 (295)
.|++||++.|++|.+..|.
T Consensus 42 dT~eEA~~~a~eAl~~~l~ 60 (80)
T d2dsya1 42 KSLKECEANLQAALEDWLL 60 (80)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4899999999999887665
No 10
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=17.16 E-value=91 Score=25.63 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=24.5
Q ss_pred CCCeEEEEEecCCCchhHHHHHHHHHHhhhCCCeeEEEEcc
Q 022528 198 LEDELFLVAYPYFNVNEMLVVEELYKEAVFNTAWKLIIFNG 238 (295)
Q Consensus 198 ~eDeifVvv~P~~s~~El~~VEkl~e~~~~~~~rPlVl~N~ 238 (295)
.=|.++||+......-.+..+|++--.+-..+-+|+|+||-
T Consensus 10 NiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK 50 (231)
T d1t9ha2 10 NVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITK 50 (231)
T ss_dssp CCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred ccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 33778888742111124667777644433367788888884
Done!