BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022529
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 210 bits (535), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 111/209 (53%), Positives = 141/209 (67%), Gaps = 7/209 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 73 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 192 IVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 251
++L+G E YRI G + ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 132 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 191
Query: 252 LGFFLQAYVTGEGPVENLAKHLSDPFANN 280
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 192 FGFFVQAIVTGKGPLENLADHLADPVNNN 220
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 210 bits (535), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/209 (53%), Positives = 141/209 (67%), Gaps = 7/209 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 73 MLGALGSVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 192 IVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 251
++L+G E YRI G + ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 132 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 191
Query: 252 LGFFLQAYVTGEGPVENLAKHLSDPFANN 280
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 192 FGFFVQAIVTGKGPLENLADHLADPVNNN 220
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 141/214 (65%), Gaps = 7/214 (3%)
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 129
+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 11 QSSSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 67
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 187
H RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 68 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 126
Query: 188 VIA-EIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 246
+ A +++L+G E YRI G + ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRL
Sbjct: 127 IWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRL 186
Query: 247 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 280
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 187 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 220
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 116/208 (55%), Gaps = 14/208 (6%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
RI + + P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 198
++PEA +G W K L G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 199 EYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-Q 257
E+ R + D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q
Sbjct: 153 EHQR---SMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQ 209
Query: 258 AYVTGEGPVENLAKHLSDPFANNLLTVI 285
+ G GP+ENLA HL+DP+ NN+ ++
Sbjct: 210 SAYPGTGPLENLATHLADPWHNNIGDIV 237
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 110/190 (57%), Gaps = 14/190 (7%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 63
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLVIDLE 212
W K L G Y G +P + ++A E + + E+ R + D E
Sbjct: 64 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR---SMEKDPE 115
Query: 213 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAK 271
K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA
Sbjct: 116 KKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 175
Query: 272 HLSDPFANNL 281
HL+DP+ NN+
Sbjct: 176 HLADPWHNNI 185
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 120/214 (56%), Gaps = 31/214 (14%)
Query: 96 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 149
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 150 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--- 205
G A+ WF+TG + T NY+ + + + E+ L+G AE+ R +
Sbjct: 126 AGLIPQETALPWFRTG-FIPPAGTYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAK 179
Query: 206 ------GLVIDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 251
+ LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 180 PGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239
Query: 252 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 285
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G W
Sbjct: 2 APGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-------WV 53
Query: 162 KTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLVIDLEDKLHPGG 219
K L G Y G +P + ++A E + + E+ R + D E K +PGG
Sbjct: 54 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR---SMEKDPEKKKYPGG 110
Query: 220 PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPF 277
FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+
Sbjct: 111 AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 169
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 120/251 (47%), Gaps = 62/251 (24%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 118
+ DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 7 FSTDRPLWYP-----GAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNL 61
Query: 119 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+++ ELIH RWAML G + E
Sbjct: 62 AGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI-- 119
Query: 153 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVIDL 211
W G + L++G++ Y G+ +P ++ + E++++G E+ R +D
Sbjct: 120 ------TWQDAGKVELIEGSS--YLGQPLPFSMTTLIWIEVLVIGYIEFQRNAE---LDT 168
Query: 212 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 271
E +L+PGG FDPLGLA DP++ +L++ EIK+ RLAM LGF +QA VTG+GP+ N
Sbjct: 169 EKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVT 228
Query: 272 HLSDPFANNLL 282
HLSDP +L
Sbjct: 229 HLSDPLHTTIL 239
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 110/219 (50%), Gaps = 36/219 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H+RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E+V +G
Sbjct: 117 AAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVFIGW 162
Query: 198 AEYYR---ITNGLVIDLE-----------DKLHPGG-PFDPLGL-AKDPDQFALLKVKEI 241
AE R I N ++ + D +PGG FDPLG + P + L+ KEI
Sbjct: 163 AEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222
Query: 242 KNGRLAMFAMLGFFLQAYVTGEGPVENL-AKHLSDPFAN 279
KNGRLAM A++G + Q TG GP++NL A HL+DP A
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADPHAT 261
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 103/198 (52%), Gaps = 30/198 (15%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
PE+L G +PGD+G+DP GLS P+ EL+H+RWAMLGAAG IPE K G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR---ITNGLVIDL 211
P W+ G +T F I E+V +G AE R I N ++
Sbjct: 61 TPS--WYTAGEQEYFTDTTTLF------------IVELVFIGWAEGRRWADILNPGCVNT 106
Query: 212 E-----------DKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 258
+ D +PGG FDPLG + P + L+ KEIKNGRLAM A++G + Q
Sbjct: 107 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH 166
Query: 259 YVTGEGPVENLAKHLSDP 276
TG GP++NL HL+DP
Sbjct: 167 IYTGTGPIDNLFAHLADP 184
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 106/203 (52%), Gaps = 23/203 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV---------GGAEYYRITN 205
P+ W+ G YF + + ++ +++ V + G I
Sbjct: 123 VPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFK 173
Query: 206 GLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 265
+ + +PGG F+PL A + K KEI NGRL M A LGF +Q VTG+GP
Sbjct: 174 QYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGP 228
Query: 266 VENLAKHLSDPFANNLLTVISGN 288
+NL +H+SDP+ N ++ + GN
Sbjct: 229 FDNLLQHISDPWHNTIVQTLGGN 251
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 92/166 (55%), Gaps = 24/166 (14%)
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLV 185
E+I+ R+AMLGAAG I PE K G A+ WF+TG + G T Y+ N +
Sbjct: 6 EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYTYWADNYTL--- 61
Query: 186 FAVIAEIVLVGGAEYYRITN---------GLVIDLEDKL-------HPGGPF-DPLGLAK 228
+ E+ L+G AE+ R+ + + LE L +PGGPF +PLG K
Sbjct: 62 --FVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGK 119
Query: 229 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 274
D LK+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+
Sbjct: 120 DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 86/176 (48%), Gaps = 30/176 (17%)
Query: 117 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 176
P+ EL+H+RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 3 PESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF 60
Query: 177 GKNIPINLVFAVIAEIVLVGGAEYYR---ITNGLVIDLE-----------DKLHPGG-PF 221
I E+V +G AE R I N ++ + D +PGG F
Sbjct: 61 ------------IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWF 108
Query: 222 DPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 276
DPLG + P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 109 DPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 164
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 25/166 (15%)
Query: 122 KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKN 179
++ AY E+I+ R+AMLGA G I PE K G A+ WF+TG + G T NY+ N
Sbjct: 13 RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADN 71
Query: 180 IPINLVFAVIAEIVLVGGAEYYRITN---------GLVIDLEDKL-------HPGGPF-D 222
+ + E+ L+G AE+ R + + LE +PGGPF +
Sbjct: 72 YTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFN 126
Query: 223 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 268
PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG GP +N
Sbjct: 127 PLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 172
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 22/178 (12%)
Query: 117 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 176
P++ + EL++ RWAMLG AG ++PE F G P+ W+ G YF
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYF 51
Query: 177 GKNIPINLVFAVIAEIVLV---------GGAEYYRITNGLVIDLEDKLHPGGPFDPLGLA 227
+ + ++ +++ V + G I + + +PGG F+PL A
Sbjct: 52 ASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFA 111
Query: 228 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 285
+ K KEI NGRLAM A LGF +Q VTG+GP +NL +H+SDP+ N ++ +
Sbjct: 112 PTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 23/179 (12%)
Query: 113 LSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT 172
L++ P++ + EL++ RWAMLG AG ++PE F G P+ W+ G
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------K 51
Query: 173 LNYFGKNIPINLVFAVIAEIVLV---------GGAEYYRITNGLVIDLEDKLHPGGPFDP 223
YF + + ++ +++ V + G I + + +PGG F+P
Sbjct: 52 EEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNP 111
Query: 224 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 282
L A + K KEI NGRL M A LGF +Q VTG+GP +NL +H+SDP+ N ++
Sbjct: 112 LNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIV 165
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
G++ R PE + + G FGLSK+ D K +AY + G ++ PE
Sbjct: 146 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK-KAY-------SFCGTVEYMAPEV 197
Query: 147 FNKFGANCGPEAVWFKTGALLLD--GNTLNYFGKNIPINLVFAVIAEI 192
N+ G A W+ G L+ + TL + GK+ + + A++
Sbjct: 198 VNRRGHT--QSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKL 243
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
G++ R PE + + G FGLSK+ D K +AY + G ++ PE
Sbjct: 147 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK-KAY-------SFCGTVEYMAPEV 198
Query: 147 FNKFGANCGPEAVWFKTGALLLD--GNTLNYFGKNIPINLVFAVIAEI 192
N+ G A W+ G L+ + TL + GK+ + + A++
Sbjct: 199 VNRRGHT--QSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKL 244
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
G++ R PE + + G FGLSK+ D K +AY + G ++ PE
Sbjct: 146 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK-KAY-------SFCGTVEYMAPEV 197
Query: 147 FNKFGANCGPEAVWFKTGALLLD--GNTLNYFGKNIPINLVFAVIAEI 192
N+ G A W+ G L+ + TL + GK+ + + A++
Sbjct: 198 VNRRGHTQS--ADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKL 243
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
G++ R PE + + G FGLSK+ D K +AY + G ++ PE
Sbjct: 150 GIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEK-KAY-------SFCGTVEYMAPEV 201
Query: 147 FNKFGANCGPEAVWFKTGALLLD--GNTLNYFGKNIPINLVFAVIAEI 192
N+ G + A W+ G L+ + +L + GK+ + + A++
Sbjct: 202 VNRQGHSHS--ADWWSYGVLMFEMLTGSLPFQGKDRKETMTLILKAKL 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.141 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,362,025
Number of Sequences: 62578
Number of extensions: 417533
Number of successful extensions: 742
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 25
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)