Query 022529
Match_columns 295
No_of_seqs 240 out of 1175
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:14:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00187 photosystem II light- 100.0 1.3E-65 2.8E-70 479.2 16.6 234 17-286 8-285 (286)
2 PLN00025 photosystem II light 100.0 2.1E-64 4.5E-69 466.7 16.3 211 72-286 43-256 (262)
3 PLN00171 photosystem light-ha 100.0 7.5E-64 1.6E-68 472.4 12.0 216 68-286 96-323 (324)
4 PLN00098 light-harvesting comp 100.0 7.1E-61 1.5E-65 444.2 15.8 197 72-287 54-266 (267)
5 PLN00101 Photosystem I light-h 100.0 8.3E-61 1.8E-65 440.2 14.2 191 73-286 46-250 (250)
6 PLN00048 photosystem I light h 100.0 2.1E-59 4.6E-64 433.9 13.8 202 74-287 36-261 (262)
7 PLN00097 photosystem I light h 100.0 2.5E-59 5.3E-64 428.9 13.3 188 77-282 41-243 (244)
8 PLN00099 light-harvesting comp 100.0 2.4E-59 5.2E-64 429.5 13.0 194 78-287 42-238 (243)
9 PLN00147 light-harvesting comp 100.0 6.5E-58 1.4E-62 421.7 15.0 196 75-288 40-252 (252)
10 PLN00100 light-harvesting comp 100.0 6E-56 1.3E-60 406.4 12.3 184 77-293 32-216 (246)
11 PLN00170 photosystem II light- 100.0 2.2E-49 4.8E-54 365.0 12.5 175 78-270 49-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 8.3E-41 1.8E-45 287.0 9.8 149 94-259 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 1E-39 2.3E-44 294.4 12.0 155 94-266 46-207 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 1.9E-34 4.1E-39 259.1 11.8 147 107-267 46-199 (202)
15 PLN00098 light-harvesting comp 99.6 2.9E-15 6.3E-20 139.9 6.6 71 213-283 76-154 (267)
16 PLN00101 Photosystem I light-h 99.5 6E-15 1.3E-19 136.6 5.8 54 213-266 67-121 (250)
17 PLN00147 light-harvesting comp 99.5 3.3E-14 7.1E-19 132.0 5.6 53 212-264 58-111 (252)
18 PLN00170 photosystem II light- 99.4 1.3E-13 2.7E-18 128.1 5.6 53 213-265 71-124 (255)
19 PLN00097 photosystem I light h 99.4 1.7E-13 3.7E-18 126.5 5.5 53 213-265 58-111 (244)
20 PLN00171 photosystem light-ha 99.4 1.6E-13 3.5E-18 130.8 5.3 53 213-265 124-177 (324)
21 PLN00048 photosystem I light h 99.4 8.5E-14 1.8E-18 129.9 2.3 53 99-151 186-238 (262)
22 PLN00025 photosystem II light 99.4 2.8E-13 6E-18 126.4 5.5 52 213-264 67-119 (262)
23 PLN00100 light-harvesting comp 99.4 4.3E-13 9.4E-18 123.9 5.2 49 213-261 49-98 (246)
24 PLN00089 fucoxanthin-chlorophy 99.4 2.6E-13 5.5E-18 123.1 2.8 52 100-151 153-205 (209)
25 PLN00187 photosystem II light- 99.3 2.7E-13 5.9E-18 127.7 2.5 53 99-151 211-263 (286)
26 PLN00099 light-harvesting comp 99.3 1.1E-12 2.5E-17 121.2 4.8 51 212-262 57-108 (243)
27 PF00504 Chloroa_b-bind: Chlor 99.3 6.3E-12 1.4E-16 108.0 5.6 50 213-263 6-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.1 4.4E-11 9.5E-16 108.1 3.2 45 215-259 41-87 (202)
29 PHA02337 putative high light i 98.1 2.5E-06 5.3E-11 56.8 3.0 28 238-265 4-31 (35)
30 PLN00084 photosystem II subuni 98.0 4.9E-06 1.1E-10 73.6 3.3 48 231-278 130-178 (214)
31 PLN00014 light-harvesting-like 97.4 0.0001 2.2E-09 67.9 3.2 36 236-271 159-194 (250)
32 PHA02337 putative high light i 96.7 0.00038 8.3E-09 46.4 0.0 28 124-151 3-30 (35)
33 PLN00014 light-harvesting-like 95.5 0.0025 5.4E-08 59.0 -0.9 29 123-151 159-187 (250)
34 PLN00084 photosystem II subuni 89.5 0.088 1.9E-06 47.0 -0.5 34 118-151 130-164 (214)
35 PLN02449 ferrochelatase 44.4 16 0.00034 37.7 2.3 22 246-267 463-484 (485)
36 PHA00003 B internal scaffoldin 20.3 1.3E+02 0.0028 25.3 3.3 33 213-248 41-74 (120)
No 1
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1.3e-65 Score=479.18 Aligned_cols=234 Identities=38% Similarity=0.705 Sum_probs=193.2
Q ss_pred hhhcCCccccccccccCCCCCCCCCCCcceeeccCCCCCCCCCCCCCccCCchhhhhhhcCCCcccccCCCcCCCCCCCC
Q 022529 17 KEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96 (295)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~r~~~lp~g~~~~~~~P~ 96 (295)
+.+.|.++. . +.++..+++++|+.++...++ +++ .+...||+++|++|||+ .+.|+
T Consensus 8 ~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~r~~w~p~-----~~~P~ 63 (286)
T PLN00187 8 SSFMGTRVP-D----------VASNSGRIVARFGFGKKKKAA-KKA-------KKKSSKVGADRPLWFPG-----AKAPE 63 (286)
T ss_pred hhhhhhhhc-c----------cccCccchhhhhccCcccccC-Ccc-------ccCccCCCCCccccCCC-----CCCcc
Confidence 556676654 1 244677888888753321111 111 11246789999999996 79999
Q ss_pred CCCCCCCCCCCCCCCcCCCChhh-------------------------------------------HHHHHHHhhhhcce
Q 022529 97 YLTGEVPGDYGYDPFGLSKKPDD-------------------------------------------FSKYQAYELIHARW 133 (295)
Q Consensus 97 ~L~G~~pGd~gfDPLGL~~~p~~-------------------------------------------l~~~ReaELkHGR~ 133 (295)
||||++|||||||||||+++|+. ++||||+|||||||
T Consensus 64 ~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRw 143 (286)
T PLN00187 64 WLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRW 143 (286)
T ss_pred cccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHH
Confidence 99999999999999999999885 69999999999999
Q ss_pred eheeccchhhhhhhccCCCCCCCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhhheeeccCcccccCC
Q 022529 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVIDLED 213 (295)
Q Consensus 134 AMLA~vG~ivpE~~~~~G~~~~p~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~qv~l~G~~E~~r~~~G~~~~~~d 213 (295)
||||++||++||+++ | ..|+++|...+..+ ..|++.+.++.+..++++|+++||++|++|+.+. +..+
T Consensus 144 AMLAvaG~lvpEll~--G------~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~~---~~~~ 211 (286)
T PLN00187 144 AMLATLGALSVEALT--G------VTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAEL---DPEK 211 (286)
T ss_pred HHHHhhchhhHHhcc--C------Cccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhccCC---CCCC
Confidence 999999999999974 2 25999997654332 3588877776666778999999999999998642 3346
Q ss_pred CCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhh
Q 022529 214 KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 286 (295)
Q Consensus 214 ~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~ 286 (295)
..||||. ||||||.+|+++++++|++|||||||||+|++||++|+.+||++|++||.+|++||+||||++++.
T Consensus 212 ~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 212 RLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred CCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccccHHHhcc
Confidence 7799997 999999999999999999999999999999999999999999999999999999999999999874
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=2.1e-64 Score=466.72 Aligned_cols=211 Identities=54% Similarity=0.946 Sum_probs=184.7
Q ss_pred hhhhcCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCC
Q 022529 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (295)
Q Consensus 72 ~~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G 151 (295)
.+.|||+||++|| |+++ .+.|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..|
T Consensus 43 ~~~~~g~~R~~~l--~p~~-~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 43 GSIWYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cccccCCCCcccc--CCcc-cCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 4679999999999 4555 689999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCcchhhhccccccCCCccccccccchh---HHHHHHHHHHHHHhhhhheeeccCcccccCCCCCCCCCCCCCCCCC
Q 022529 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAK 228 (295)
Q Consensus 152 ~~~~p~~~W~~aG~~~l~~~~l~y~g~~~pi---~~~~~~~~qv~l~G~~E~~r~~~G~~~~~~d~~~PGg~FDPLgl~~ 228 (295)
..+ .+.+||++|...+..++++|++++..+ .+..++++|+++||++|.+|+.++......|..||||+||||||.+
T Consensus 120 ~~~-~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~ 198 (262)
T PLN00025 120 VKF-GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLAD 198 (262)
T ss_pred cCc-CcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccCC
Confidence 543 356899999877777788999876432 2344567899999999999987642222235689999999999999
Q ss_pred ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhh
Q 022529 229 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 286 (295)
Q Consensus 229 dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~ 286 (295)
|+++++++|++|||||||||+||+||++|+++||++|++||.+|++||+|||++++..
T Consensus 199 d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~ 256 (262)
T PLN00025 199 DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYAT 256 (262)
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999998753
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=7.5e-64 Score=472.41 Aligned_cols=216 Identities=49% Similarity=0.827 Sum_probs=186.9
Q ss_pred chhhhhhhcCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhh
Q 022529 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147 (295)
Q Consensus 68 ~~~~~~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~ 147 (295)
.+++.+.|||++|++|||+ ++ .++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||++
T Consensus 96 ~~~~~~~~~g~~R~~wl~~--~~-~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l 172 (324)
T PLN00171 96 KARNESFWYGEERPRWLGP--IP-YDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVL 172 (324)
T ss_pred hhcccCcccCCCCccccCC--CC-CCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHh
Confidence 5667889999999999964 33 47999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcchhhhccccccCCCccccccccch-----hHHHHHHHHHHHHHhhhhheeeccCc------ccccCCCCC
Q 022529 148 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLVGGAEYYRITNGL------VIDLEDKLH 216 (295)
Q Consensus 148 ~~~G~~~~p~~~W~~aG~~~l~~~~l~y~g~~~p-----i~~~~~~~~qv~l~G~~E~~r~~~G~------~~~~~d~~~ 216 (295)
++.|....++++||++|...+.+.+++|++.+.. ..+..++++|+++|+++|++|+.+-. ....+|..|
T Consensus 173 ~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gY 252 (324)
T PLN00171 173 DLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINY 252 (324)
T ss_pred ccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccC
Confidence 8877654456789999987777777778776531 23455678999999889999976511 011235568
Q ss_pred CCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhh
Q 022529 217 PGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 286 (295)
Q Consensus 217 PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~ 286 (295)
|||. ||||||.+|+++++++|++|||||||||+||+||++|+.+||++|++||.+|++||+||||++++.
T Consensus 253 PGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 253 PGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred CcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 9997 999999999999999999999999999999999999999999999999999999999999999874
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=7.1e-61 Score=444.23 Aligned_cols=197 Identities=42% Similarity=0.784 Sum_probs=170.0
Q ss_pred hhhhcCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCC
Q 022529 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (295)
Q Consensus 72 ~~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G 151 (295)
...+|+++|++|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||++++.|
T Consensus 54 ~~~~~~~~r~~w~Pg-----~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g 128 (267)
T PLN00098 54 VCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG 128 (267)
T ss_pred ccccCCCCccccCCC-----CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 456799999999996 789999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhhheeecc----Cccc-c---------cCCCCCC
Q 022529 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLVI-D---------LEDKLHP 217 (295)
Q Consensus 152 ~~~~p~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~qv~l~G~~E~~r~~~----G~~~-~---------~~d~~~P 217 (295)
.. ....|+++|.. .|++.+. .+.++|+++||++|.+|+.+ |... + ..|..||
T Consensus 129 ~~--~~~~w~~Ag~~-------~~~~~~~-----~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yP 194 (267)
T PLN00098 129 FI--ENFSWYDAGAR-------EYFADPT-----TLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYP 194 (267)
T ss_pred cc--cccccccccch-------hhccCch-----HHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCC
Confidence 53 24579998853 3554432 24577999999999988754 1100 0 1145799
Q ss_pred CCC-CCCCCCCC-ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhhc
Q 022529 218 GGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 287 (295)
Q Consensus 218 Gg~-FDPLgl~~-dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~~ 287 (295)
||+ ||||||.+ |+++++++|++|||||||||+||+||++|+.+||++|++||.+|++||+||||++++.+
T Consensus 195 Gg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 195 GGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred CCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 999 99999975 89999999999999999999999999999999999999999999999999999998765
No 5
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=8.3e-61 Score=440.23 Aligned_cols=191 Identities=40% Similarity=0.734 Sum_probs=163.5
Q ss_pred hhhcCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCCC
Q 022529 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (295)
Q Consensus 73 ~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G~ 152 (295)
+.++..+|++|+|+ .+.|+||||++|||+|||||||++|+++++|||++||+||||||||++|+++||++++.|.
T Consensus 46 ~~~~~~~r~~W~P~-----~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~ 120 (250)
T PLN00101 46 SFKVEAKKGEWLPG-----LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120 (250)
T ss_pred cccccccccccCCC-----CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCC
Confidence 45667899999996 7899999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhhheeecc----Cccc----------ccCCCCCCC
Q 022529 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLVI----------DLEDKLHPG 218 (295)
Q Consensus 153 ~~~p~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~qv~l~G~~E~~r~~~----G~~~----------~~~d~~~PG 218 (295)
.. .+.|+++|+. .|++.. ..++++|+++|+++|++|+.+ |... ...|..|||
T Consensus 121 ~~--~p~w~~ag~~-------~~~~~~-----~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPG 186 (250)
T PLN00101 121 IN--APQWYDAGKA-------EYFASS-----STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPG 186 (250)
T ss_pred cC--CCccccccch-------hhcccc-----hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCC
Confidence 43 3469998853 355433 234567888999999999764 2110 113456999
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhh
Q 022529 219 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 286 (295)
Q Consensus 219 g~FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~ 286 (295)
|.||||||+++ +++|+||||||||||+||+||++|+++||++|++||.+|++||+||||+++++
T Consensus 187 G~FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 187 GIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred CccCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhcC
Confidence 99999999865 37899999999999999999999999999999999999999999999999864
No 6
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=2.1e-59 Score=433.89 Aligned_cols=202 Identities=42% Similarity=0.739 Sum_probs=169.6
Q ss_pred hhcCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChh------hHHHHHHHhhhhcceeheeccchhhhhhh
Q 022529 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------DFSKYQAYELIHARWAMLGAAGFIIPEAF 147 (295)
Q Consensus 74 ~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~------~l~~~ReaELkHGR~AMLA~vG~ivpE~~ 147 (295)
.+|+++|++|+|+ .+.|+||||++|||||||||||++ ++ +.+|+|++|||||||||||++|+++||++
T Consensus 36 ~~~~~~r~~w~p~-----~~~P~yLdG~lPGD~GFDPlGL~~-p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell 109 (262)
T PLN00048 36 AKQGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLSD-PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEIL 109 (262)
T ss_pred CCCCCCCceecCC-----CCCccccCCCCCCccCCCccccCC-ccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHh
Confidence 3457899999996 799999999999999999999984 33 67999999999999999999999999999
Q ss_pred ccCCCCCCC-cchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhhheeecc----Ccc-----c-------c
Q 022529 148 NKFGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLV-----I-------D 210 (295)
Q Consensus 148 ~~~G~~~~p-~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~qv~l~G~~E~~r~~~----G~~-----~-------~ 210 (295)
++.|..... ...|+++|+... .+..+|++.+. .++++|+++||++|++|+++ |.. . .
T Consensus 110 ~~~g~~~~~~~~~w~~ag~~~~-~~~~~y~~~p~-----~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~ 183 (262)
T PLN00048 110 GKAGLIPQETALPWFQSGVIPP-AGTYDYWADPY-----TLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGG 183 (262)
T ss_pred ccCCcccccccccccccccccc-ccccccccchh-----HHHHHHHHHhhheeeeccccccCCCcccccccccchhcccc
Confidence 887754221 236999986432 33456777642 34578899999999998865 210 0 0
Q ss_pred cCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhhc
Q 022529 211 LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 287 (295)
Q Consensus 211 ~~d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~~ 287 (295)
..|..||||+ ||||||.+|+|+++++|++|||||||||+|++||++|+++||++|++||.+|++||+||||+++++.
T Consensus 184 ~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~~ 261 (262)
T PLN00048 184 SGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKF 261 (262)
T ss_pred ccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccccc
Confidence 1256799998 9999999999999999999999999999999999999999999999999999999999999998754
No 7
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=2.5e-59 Score=428.92 Aligned_cols=188 Identities=39% Similarity=0.627 Sum_probs=161.4
Q ss_pred CCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCCCCCCC
Q 022529 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (295)
Q Consensus 77 g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G~~~~p 156 (295)
+++|++|+|+ .+.|+||||++|||||||||||++++++++|||++||+||||||||++|+++||+++..|...
T Consensus 41 ~~~R~~w~Pg-----~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~-- 113 (244)
T PLN00097 41 AADRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMAD-- 113 (244)
T ss_pred CCCCcccCCC-----CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCccc--
Confidence 5799999996 789999999999999999999999999999999999999999999999999999998876532
Q ss_pred cchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhhheeecc----Ccc-c----------ccCCCCCCCCCC
Q 022529 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLV-I----------DLEDKLHPGGPF 221 (295)
Q Consensus 157 ~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~qv~l~G~~E~~r~~~----G~~-~----------~~~d~~~PGg~F 221 (295)
...||++|+.. .|+... ..++++|+++|+++|.+|+.+ |.. . ...|..||||.|
T Consensus 114 ~p~W~~Ag~~~------~~~~~~-----~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~F 182 (244)
T PLN00097 114 LPNWIDAAKWD------GYWAGA-----GPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLF 182 (244)
T ss_pred CCccccCCcch------hccccc-----hhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCC
Confidence 34799998532 133321 134567888899999998764 110 0 112445999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHH
Q 022529 222 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 282 (295)
Q Consensus 222 DPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~ 282 (295)
|||||.+|+++++++|+||||||||||+|++||++|+.+||++|++||.+|++||+|||++
T Consensus 183 DPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 183 DKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999986
No 8
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=2.4e-59 Score=429.48 Aligned_cols=194 Identities=42% Similarity=0.778 Sum_probs=166.6
Q ss_pred CCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCCCCCCCc
Q 022529 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (295)
Q Consensus 78 ~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G~~~~p~ 157 (295)
.+|..|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+|+||+++.
T Consensus 42 ~~~~~w~P~-----~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------- 108 (243)
T PLN00099 42 TMSADWMPG-----QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------- 108 (243)
T ss_pred cccccccCC-----CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------
Confidence 477889996 7899999999999999999999999999999999999999999999999999999752
Q ss_pred chhhhcccc-ccCCCccccccccchh-HHHHHHHHHHHHHhhhhheeeccCcccccCCCCCCCCCCCCCCCCCChHHHHH
Q 022529 158 AVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFAL 235 (295)
Q Consensus 158 ~~W~~aG~~-~l~~~~l~y~g~~~pi-~~~~~~~~qv~l~G~~E~~r~~~G~~~~~~d~~~PGg~FDPLgl~~dpe~~~~ 235 (295)
..|+++++. .+.++..+|++.+.++ .+..++++|+++||++|.+|.... +.+++.||||.||||||.+|++++++
T Consensus 109 ~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~---~~~~~~yPGd~FDPlGl~kd~~~~~~ 185 (243)
T PLN00099 109 GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK---DPEKKKYPGGAFDPLGYSKDPKKFEE 185 (243)
T ss_pred CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC---CCCCCcCCCCcCCcccccCCHHHHHH
Confidence 147777642 2344445677766554 245567889999999999876432 23457899999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHh-hccCCcchhhhhhhhcCCccchHHHHhhc
Q 022529 236 LKVKEIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHLSDPFANNLLTVISG 287 (295)
Q Consensus 236 ~k~kELKNGRLAMlAilG~~~Q~-~vTG~gPl~nL~~h~adP~~~n~~~~~~~ 287 (295)
+|+|||||||||||||+||++|+ .+||++|++||.+|++||+|||+++++..
T Consensus 186 ~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 186 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence 99999999999999999999998 57999999999999999999999998765
No 9
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=6.5e-58 Score=421.74 Aligned_cols=196 Identities=40% Similarity=0.729 Sum_probs=165.9
Q ss_pred hcCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCCCCC
Q 022529 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (295)
Q Consensus 75 ~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G~~~ 154 (295)
.++++|++|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||+++..|...
T Consensus 40 ~~~~~R~~wlP~-----~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~ 114 (252)
T PLN00147 40 VVAQERPTWLPG-----LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRN 114 (252)
T ss_pred cCCCCccccCCC-----CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcC
Confidence 557899999996 689999999999999999999999999999999999999999999999999999988766432
Q ss_pred CCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhhheeecc----Cc------cc------ccCCCCCCC
Q 022529 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL------VI------DLEDKLHPG 218 (295)
Q Consensus 155 ~p~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~qv~l~G~~E~~r~~~----G~------~~------~~~d~~~PG 218 (295)
.+.|+++|...++ +.. ....+++|+++||++|.+|+.+ |. +. ...+..|||
T Consensus 115 --~p~w~~ag~~~~~------~~~-----~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPG 181 (252)
T PLN00147 115 --LPVWYEAGAVKFE------FAS-----TRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPG 181 (252)
T ss_pred --Ccchhhcccchhc------ccc-----chHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCCcc
Confidence 3469988743221 111 1245678998999999988643 10 00 011356999
Q ss_pred CC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhhcc
Q 022529 219 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 288 (295)
Q Consensus 219 g~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~~~ 288 (295)
|+ ||||||.+|+++++++|+||||||||||+||+||++|+++||++|++||.+|++||+||||++++..+
T Consensus 182 d~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~~ 252 (252)
T PLN00147 182 GPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSHS 252 (252)
T ss_pred cccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcCC
Confidence 99 99999999999999999999999999999999999999999999999999999999999999998653
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=6e-56 Score=406.43 Aligned_cols=184 Identities=34% Similarity=0.559 Sum_probs=153.7
Q ss_pred CCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCCCCCCC
Q 022529 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (295)
Q Consensus 77 g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G~~~~p 156 (295)
..+|++|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||+++.
T Consensus 32 ~~~r~~W~P~-----~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~------- 99 (246)
T PLN00100 32 ARARPMWYPG-----ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL------- 99 (246)
T ss_pred cCCCcccCCC-----CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc-------
Confidence 4489999996 7899999999999999999999999999999999999999999999999999999652
Q ss_pred cchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhhheeeccCcccccCCCCCCCCC-CCCCCCCCChHHHHH
Q 022529 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGP-FDPLGLAKDPDQFAL 235 (295)
Q Consensus 157 ~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~qv~l~G~~E~~r~~~G~~~~~~d~~~PGg~-FDPLgl~~dpe~~~~ 235 (295)
+.|+++|... |.. ....++++|+++||++|.+|+.+-. ..++...||++ ||||||.+ ++
T Consensus 100 -P~w~~ag~~~-------~~~-----~~~~l~~iqill~g~~E~~r~~~~~--~~g~~~~pg~~~FDPLGl~~-----~~ 159 (246)
T PLN00100 100 -PKFWEAGAEK-------YGL-----DLQTLVLIQVVVMAVLEAARYRGFM--KTGESGVLSFFPFDPTGMDS-----PE 159 (246)
T ss_pred -cchhhcchhh-------hcc-----chhHHHHHHHHHHHHHhhhcccccc--cccccCCCCCCCCCcccccH-----HH
Confidence 2488877432 211 1234567899999999999876421 22234568888 99999963 57
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhhcccccCC
Q 022529 236 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAP 293 (295)
Q Consensus 236 ~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~~~~~~~~ 293 (295)
+|+||||||||||+||+||++|+++||++|++||.+|++||+|+|++++. .+.|.++
T Consensus 160 ~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~-~~~~~~~ 216 (246)
T PLN00100 160 MKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS-VGPETVA 216 (246)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC-CCCccch
Confidence 99999999999999999999999999999999999999999999999863 2344443
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=2.2e-49 Score=365.04 Aligned_cols=175 Identities=37% Similarity=0.618 Sum_probs=141.8
Q ss_pred CCcccccCCC-cCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCCCCCCC
Q 022529 78 PDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (295)
Q Consensus 78 ~~r~~~lp~g-~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G~~~~p 156 (295)
.+|+.|+|+- +-.....|+||||++|||+||||+||++|+++++|||++||+||||||||++|+++||+++.
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g------- 121 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG------- 121 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC-------
Confidence 4788899851 01123579999999999999999999999999999999999999999999999999999752
Q ss_pred cchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhhheeeccCccc--------------------ccCCCCC
Q 022529 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVI--------------------DLEDKLH 216 (295)
Q Consensus 157 ~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~qv~l~G~~E~~r~~~G~~~--------------------~~~d~~~ 216 (295)
..|+++|... .+.. |..+..++++|+++||++|.+|+.+.... ..++..|
T Consensus 122 -~~w~~aG~~~------~~~~---p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~y 191 (255)
T PLN00170 122 -IPWFEAGADP------GAIA---PFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGY 191 (255)
T ss_pred -CChhhCCccc------cccC---ccchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCccc
Confidence 3599998632 1111 22234556789999999999998652100 0124569
Q ss_pred CCCC-CCCCCCCC---------ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhh
Q 022529 217 PGGP-FDPLGLAK---------DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 270 (295)
Q Consensus 217 PGg~-FDPLgl~~---------dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~ 270 (295)
|||. ||||||.+ |+++++++|++|||||||||+|++||++|+ .||++|+++|.
T Consensus 192 PGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 192 PGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred CCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 9997 99999985 789999999999999999999999999999 69999999974
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=8.3e-41 Score=286.98 Aligned_cols=149 Identities=42% Similarity=0.690 Sum_probs=115.2
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCCCCCC--CcchhhhccccccCCC
Q 022529 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG--PEAVWFKTGALLLDGN 171 (295)
Q Consensus 94 ~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G~~~~--p~~~W~~aG~~~l~~~ 171 (295)
.|++|||+++||+||||+||++++ +++|||++|||||||||||++|++++|++++++.... ....|+.++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 489999999999999999999986 9999999999999999999999999999987653211 1122554320
Q ss_pred ccccccccchhHHHHHHHHH-HHHHhhhhheeeccCccc---ccCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhH
Q 022529 172 TLNYFGKNIPINLVFAVIAE-IVLVGGAEYYRITNGLVI---DLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRL 246 (295)
Q Consensus 172 ~l~y~g~~~pi~~~~~~~~q-v~l~G~~E~~r~~~G~~~---~~~d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRL 246 (295)
+ + ++..+++| ++++|.+|.++..+.... ...+..+||+. |||||+.+|+++++++|++|||||||
T Consensus 74 -~-----~----~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRl 143 (156)
T PF00504_consen 74 -I-----P----VPAAGWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRL 143 (156)
T ss_dssp -S-----S----SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHH
T ss_pred -h-----h----hhhHHHHHHHHHHhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 0 0 12233434 456899999876642110 12356899998 99999998999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 022529 247 AMFAMLGFFLQAY 259 (295)
Q Consensus 247 AMlAilG~~~Q~~ 259 (295)
|||||+|+++|+.
T Consensus 144 AMla~~g~~~~e~ 156 (156)
T PF00504_consen 144 AMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999973
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=294.38 Aligned_cols=155 Identities=30% Similarity=0.387 Sum_probs=116.0
Q ss_pred CCCCCCCCCCCCCCCCCCcCCC-ChhhHHHHHHHhhhhcceeheeccchhhhhhhccCCCCC--CCcchhhhccccccCC
Q 022529 94 IPEYLTGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLLDG 170 (295)
Q Consensus 94 ~P~~L~G~~pGd~gfDPLGL~~-~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G~~~--~p~~~W~~aG~~~l~~ 170 (295)
.|..|||. .||++||||||++ ++++++|||++|||||||||||++|+++||+++.+|... ...+.|+.+.
T Consensus 46 ~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~------ 118 (209)
T PLN00089 46 KEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAH------ 118 (209)
T ss_pred CCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHH------
Confidence 46679999 9999999999996 577899999999999999999999999999876554210 0000111100
Q ss_pred CccccccccchhHHHHH-HHHHHHH-HhhhhheeeccCcccccCCCCCCCCC-CCCCCCC-CChHHHHHHHHHHHhhhhH
Q 022529 171 NTLNYFGKNIPINLVFA-VIAEIVL-VGGAEYYRITNGLVIDLEDKLHPGGP-FDPLGLA-KDPDQFALLKVKEIKNGRL 246 (295)
Q Consensus 171 ~~l~y~g~~~pi~~~~~-~~~qv~l-~G~~E~~r~~~G~~~~~~d~~~PGg~-FDPLgl~-~dpe~~~~~k~kELKNGRL 246 (295)
+ .++.. .++|+++ +|++|............+++++|||+ ||||||. +|+++++++|++|||||||
T Consensus 119 ---~--------~~~~~g~~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRl 187 (209)
T PLN00089 119 ---D--------ALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRL 187 (209)
T ss_pred ---H--------hhcccccHHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHH
Confidence 0 11112 2568765 89999542221111122346789999 9999995 6899999999999999999
Q ss_pred HHHHHHHHHHHhhccCCcch
Q 022529 247 AMFAMLGFFLQAYVTGEGPV 266 (295)
Q Consensus 247 AMlAilG~~~Q~~vTG~gPl 266 (295)
|||||+||++|+.+||++.+
T Consensus 188 AM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 188 AMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999875
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=259.08 Aligned_cols=147 Identities=19% Similarity=0.292 Sum_probs=103.5
Q ss_pred CCCCCcCCC--ChhhHHHHHHHhhhhcceeheeccchhhhhhhccCCCCCCCcchhhhccccccCCCccccccccchhHH
Q 022529 107 GYDPFGLSK--KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 184 (295)
Q Consensus 107 gfDPLGL~~--~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G~~~~p~~~W~~aG~~~l~~~~l~y~g~~~pi~~ 184 (295)
.|||+||++ ++++++|||++|||||||||||++|++++|++.+++.........+.. ..+ .+..+ -.+
T Consensus 46 ~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~---~p~--~~~a~-----~~v 115 (202)
T PLN00120 46 FFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSD---IPN--GFAAL-----DAI 115 (202)
T ss_pred CCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccc---ccc--chhhh-----hhc
Confidence 399999974 689999999999999999999999999999854443211100001100 000 00000 123
Q ss_pred HHHHHHHHHH-HhhhhheeeccCcccccCCCCCCCCC-CC--CCCCCC-ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 022529 185 VFAVIAEIVL-VGGAEYYRITNGLVIDLEDKLHPGGP-FD--PLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 259 (295)
Q Consensus 185 ~~~~~~qv~l-~G~~E~~r~~~G~~~~~~d~~~PGg~-FD--PLgl~~-dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~ 259 (295)
+..+++||++ +|++|+++..+- .+++++|||+ ++ +|||.. |+++++++|++||||||||||||+||++|+.
T Consensus 116 p~~g~~qi~~~ig~~E~~~~~~~----~~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~ 191 (202)
T PLN00120 116 PTAGLLQILAFIGFLELAVMKDI----TGEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQ 191 (202)
T ss_pred chhHHHHHHHHHHHHHHHhhccc----ccCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888765 799998754321 1135678865 22 556554 7899999999999999999999999999999
Q ss_pred ccCCcchh
Q 022529 260 VTGEGPVE 267 (295)
Q Consensus 260 vTG~gPl~ 267 (295)
++|+.|+-
T Consensus 192 l~g~~~~~ 199 (202)
T PLN00120 192 LGVELPII 199 (202)
T ss_pred ccCCCcCC
Confidence 99998863
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.57 E-value=2.9e-15 Score=139.88 Aligned_cols=71 Identities=31% Similarity=0.529 Sum_probs=59.0
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhh--h-----hhhhcCCccchHHH
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN--L-----AKHLSDPFANNLLT 283 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~n--L-----~~h~adP~~~n~~~ 283 (295)
|+.+|||+ ||||||.+|+++++++|++||||||+||+|++|+++|+++++.+++++ + .+++.||....+++
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q 154 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQ 154 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHH
Confidence 56689999 999999999999999999999999999999999999999998877653 2 13456776544444
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.54 E-value=6e-15 Score=136.62 Aligned_cols=54 Identities=39% Similarity=0.682 Sum_probs=51.1
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 266 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl 266 (295)
|+.+|||+ ||||||.+|+++++++|++|||||||||+|++|+++|+++|+.+++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 56689999 9999999999999999999999999999999999999999998876
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.48 E-value=3.3e-14 Score=131.96 Aligned_cols=53 Identities=30% Similarity=0.525 Sum_probs=49.5
Q ss_pred CCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCc
Q 022529 212 EDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 264 (295)
Q Consensus 212 ~d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~g 264 (295)
-|+.+|||+ ||||||.+|+++++++|++||||||+||+|++|+++|++++..+
T Consensus 58 Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 58 LDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 367899999 99999999999999999999999999999999999999998755
No 18
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.43 E-value=1.3e-13 Score=128.08 Aligned_cols=53 Identities=40% Similarity=0.595 Sum_probs=49.3
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcc
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 265 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gP 265 (295)
|+.+|||+ ||||+|.+|++.++++|++||+|||+||+|++|+++|+++||...
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w 124 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPW 124 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCCh
Confidence 45689999 999999999999999999999999999999999999999998643
No 19
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.41 E-value=1.7e-13 Score=126.55 Aligned_cols=53 Identities=30% Similarity=0.466 Sum_probs=49.6
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcc
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 265 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gP 265 (295)
|+..|||+ ||||||.+|+++++++|++||||||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 56789999 999999999999999999999999999999999999999998654
No 20
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.41 E-value=1.6e-13 Score=130.76 Aligned_cols=53 Identities=36% Similarity=0.422 Sum_probs=49.1
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcc
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 265 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gP 265 (295)
|+..|||+ ||||||.+|+++++++|++||||||+||+|++|+++|+++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 56789999 999999999999999999999999999999999999999876543
No 21
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.40 E-value=8.5e-14 Score=129.89 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCC
Q 022529 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (295)
Q Consensus 99 ~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G 151 (295)
|..+|||++|||+||++|+++++++|..||||||+||+|++|+++|++++..|
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~g 238 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCC
Confidence 44699999999999999999999999999999999999999999999987654
No 22
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.39 E-value=2.8e-13 Score=126.39 Aligned_cols=52 Identities=31% Similarity=0.511 Sum_probs=48.1
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCc
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 264 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~g 264 (295)
|+..|||+ ||||||.+|+++++++|++||||||+||+|++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 45679999 99999999999999999999999999999999999999998653
No 23
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.37 E-value=4.3e-13 Score=123.91 Aligned_cols=49 Identities=37% Similarity=0.579 Sum_probs=46.5
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 261 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vT 261 (295)
|+.+|||+ ||||||.+|+++++++|.+||||||+||+|++|+++|++++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 56789999 99999999999999999999999999999999999999975
No 24
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.36 E-value=2.6e-13 Score=123.09 Aligned_cols=52 Identities=31% Similarity=0.535 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCcCC-CChhhHHHHHHHhhhhcceeheeccchhhhhhhccCC
Q 022529 100 GEVPGDYGYDPFGLS-KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (295)
Q Consensus 100 G~~pGd~gfDPLGL~-~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G 151 (295)
++.|||+||||+||. +|+++++++|.+||||||+||+|++|+++||++++.|
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g 205 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC
Confidence 578999999999994 6899999999999999999999999999999987654
No 25
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.35 E-value=2.7e-13 Score=127.66 Aligned_cols=53 Identities=34% Similarity=0.511 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCC
Q 022529 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (295)
Q Consensus 99 ~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G 151 (295)
+..+|||++|||+||++++++++++|++|||||||||+|++|+++|++++..|
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~G 263 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKG 263 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC
Confidence 44589999999999999999999999999999999999999999999988655
No 26
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.32 E-value=1.1e-12 Score=121.20 Aligned_cols=51 Identities=31% Similarity=0.451 Sum_probs=47.3
Q ss_pred CCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccC
Q 022529 212 EDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 262 (295)
Q Consensus 212 ~d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG 262 (295)
-|+..|||+ ||||+|.+++++++++|.+||||||+||+|++|+++|++++.
T Consensus 57 Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 57 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 367789998 999999999999999999999999999999999999999753
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.26 E-value=6.3e-12 Score=108.01 Aligned_cols=50 Identities=48% Similarity=0.780 Sum_probs=45.3
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCC
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 263 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~ 263 (295)
|+.++|++ ||||||++|+ .+.++|..||||||+||+|++|++++++.++.
T Consensus 6 ~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 6 DGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred cCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 34567877 9999999888 89999999999999999999999999999874
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.10 E-value=4.4e-11 Score=108.09 Aligned_cols=45 Identities=42% Similarity=0.786 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCC--CChHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 022529 215 LHPGGPFDPLGLA--KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 259 (295)
Q Consensus 215 ~~PGg~FDPLgl~--~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~ 259 (295)
..|.|+||||||. +|+++++++|.+||||||+||+|++||++|+.
T Consensus 41 ~~p~g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 41 QAPLGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 4577889999997 47899999999999999999999999999996
No 29
>PHA02337 putative high light inducible protein
Probab=98.11 E-value=2.5e-06 Score=56.82 Aligned_cols=28 Identities=32% Similarity=0.233 Sum_probs=25.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhccCCcc
Q 022529 238 VKEIKNGRLAMFAMLGFFLQAYVTGEGP 265 (295)
Q Consensus 238 ~kELKNGRLAMlAilG~~~Q~~vTG~gP 265 (295)
..|+-|||||||+|+..+.-+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999864
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.98 E-value=4.9e-06 Score=73.55 Aligned_cols=48 Identities=35% Similarity=0.399 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-CCcchhhhhhhhcCCcc
Q 022529 231 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSDPFA 278 (295)
Q Consensus 231 e~~~~~k~kELKNGRLAMlAilG~~~Q~~vT-G~gPl~nL~~h~adP~~ 278 (295)
....+.|..|+.||||||+||+--++-+++| |+|++.||.....-|..
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~ 178 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVI 178 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcch
Confidence 3566788899999999999999999999999 99999999877766654
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.42 E-value=0.0001 Score=67.92 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=32.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhh
Q 022529 236 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 271 (295)
Q Consensus 236 ~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~ 271 (295)
+...|+-|||+|||||+..++-+++||++.++|+..
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 356899999999999999999999999999998854
No 32
>PHA02337 putative high light inducible protein
Probab=96.73 E-value=0.00038 Score=46.44 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=24.7
Q ss_pred HHHhhhhcceeheeccchhhhhhhccCC
Q 022529 124 QAYELIHARWAMLGAAGFIIPEAFNKFG 151 (295)
Q Consensus 124 ReaELkHGR~AMLA~vG~ivpE~~~~~G 151 (295)
..+|+.|||+||+|++-.++.|+++..+
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ 30 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQI 30 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999987544
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.54 E-value=0.0025 Score=58.97 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.6
Q ss_pred HHHHhhhhcceeheeccchhhhhhhccCC
Q 022529 123 YQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (295)
Q Consensus 123 ~ReaELkHGR~AMLA~vG~ivpE~~~~~G 151 (295)
+.++|+.|||+||+|++-.++.|++++.|
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~g 187 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVG 187 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCc
Confidence 36799999999999999999999987544
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=89.48 E-value=0.088 Score=47.03 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=29.2
Q ss_pred hhHHHHHHHhhhhcceeheeccchhhhhhhc-cCC
Q 022529 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFN-KFG 151 (295)
Q Consensus 118 ~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~-~~G 151 (295)
.+.+..+..|+.+||+||||++-.++.|+++ ..|
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqG 164 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMG 164 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcc
Confidence 4566677789999999999999999999988 554
No 35
>PLN02449 ferrochelatase
Probab=44.35 E-value=16 Score=37.71 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhccCCcchh
Q 022529 246 LAMFAMLGFFLQAYVTGEGPVE 267 (295)
Q Consensus 246 LAMlAilG~~~Q~~vTG~gPl~ 267 (295)
+||+||+.+++-++++|+||+.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999963
No 36
>PHA00003 B internal scaffolding protein
Probab=20.27 E-value=1.3e+02 Score=25.28 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=23.0
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHH
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 248 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAM 248 (295)
++.+|-|+ |||-- .| -+.++.|-.||.+||-+-
T Consensus 41 ~~t~p~gLRrdpvq--~d-~EaERqkr~~iEagk~~c 74 (120)
T PHA00003 41 NGTDPSGLRRDPVQ--QD-LEAERQKRADIEAGKAIC 74 (120)
T ss_pred CCCCccccccCccc--ch-HHHHHHHHHHHHHHHHHH
Confidence 45567777 88742 22 356788899999999754
Done!