Query 022529
Match_columns 295
No_of_seqs 240 out of 1175
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:58:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 1.3E-65 4.3E-70 468.0 16.2 217 72-295 13-232 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 7.6E-64 2.6E-68 457.1 5.5 195 74-285 5-242 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 5.9E-60 2E-64 438.1 -3.3 196 72-287 56-268 (269)
4 2wsc_3 LHCA3, type II chloroph 100.0 1.2E-57 4.1E-62 424.0 5.6 200 76-287 52-275 (276)
5 2wsc_4 Chlorophyll A-B binding 100.0 1.9E-58 6.6E-63 424.7 -2.3 191 73-287 45-250 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 8.7E-56 3E-60 404.8 5.1 192 79-286 44-238 (241)
7 2bhw_A Chlorophyll A-B binding 99.4 2.6E-13 9E-18 123.4 6.5 50 213-262 37-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 3.8E-14 1.3E-18 130.3 -1.0 54 213-266 67-121 (251)
9 3pl9_A Chlorophyll A-B binding 99.3 1.4E-13 4.8E-18 125.8 1.8 50 101-151 172-221 (243)
10 2wsc_2 LHCA2, type II chloroph 99.3 9.7E-14 3.3E-18 128.7 -0.3 54 213-266 78-132 (269)
11 2wsc_3 LHCA3, type II chloroph 99.3 1.9E-13 6.5E-18 127.1 0.0 54 98-151 199-252 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 99.2 9.3E-13 3.2E-17 120.4 -0.1 50 213-262 59-109 (241)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=1.3e-65 Score=468.03 Aligned_cols=217 Identities=51% Similarity=0.923 Sum_probs=187.8
Q ss_pred hhhhcCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCC
Q 022529 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (295)
Q Consensus 72 ~~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G 151 (295)
.++|||+||++|| |+++ .+.|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..|
T Consensus 13 ~~~~~~~~r~~~l--~~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 13 GSPWYGPDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp TCTTSSTTCCCTT--GGGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccCCCccccc--Cccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 4589999999999 4455 689999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCcchhhhccccccCCCccccccccchh---HHHHHHHHHHHHHhhhhheeeccCcccccCCCCCCCCCCCCCCCCC
Q 022529 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAK 228 (295)
Q Consensus 152 ~~~~p~~~W~~aG~~~l~~~~l~y~g~~~pi---~~~~~~~~qv~l~G~~E~~r~~~G~~~~~~d~~~PGg~FDPLgl~~ 228 (295)
..+ ++..|+++|...+++.+++|++.+... .+..++++|+++||++|.+|+.++...+..|..||||.||||||.+
T Consensus 90 ~~~-~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~ 168 (232)
T 2bhw_A 90 VKF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAD 168 (232)
T ss_dssp CCC-SCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTC
T ss_pred cCC-cccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhcc
Confidence 543 367899999877766667788765321 2344567899999999999887643223346789999999999999
Q ss_pred ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhhcccccCCCC
Q 022529 229 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 295 (295)
Q Consensus 229 dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~~~~~~~~~~ 295 (295)
|+++++++|++|||||||||+||+|+++|+.+||++|++||.+|++||||||+++++ .+.+|++
T Consensus 169 ~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~---~~~~~~~ 232 (232)
T 2bhw_A 169 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYA---TNFVPGK 232 (232)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGT---TTTCSCC
T ss_pred chHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHH---HhhcCCC
Confidence 999999999999999999999999999999999999999999999999999999873 4677764
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=7.6e-64 Score=457.11 Aligned_cols=195 Identities=41% Similarity=0.793 Sum_probs=137.3
Q ss_pred hhcCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChh-----------------------------------
Q 022529 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------------------------- 118 (295)
Q Consensus 74 ~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~----------------------------------- 118 (295)
.|++++|++|+|+ .+.|+||||++|||||||||||+++||
T Consensus 5 ~~~~~~r~~w~pg-----~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (243)
T 3pl9_A 5 SGFSTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTS 79 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCC-----CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccc
Confidence 3557799999996 899999999999999999999999987
Q ss_pred --------hHHHHHHHhhhhcceeheeccchhhhhhhccCCCCCCCcchhhhccccccCCCccccccccchhHHHHHHHH
Q 022529 119 --------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190 (295)
Q Consensus 119 --------~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G~~~~p~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~ 190 (295)
+++||||+|||||||||||++|+++||+++. ..|+++|+..+.+ .++|++.+.+..+..++++
T Consensus 80 ~~~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--------~~W~~aG~~~~~~-g~~y~g~p~~~~i~~l~~~ 150 (243)
T 3pl9_A 80 LQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG--------ITWQDAGKVELIE-GSSYLGQPLPFSMTTLIWI 150 (243)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCTTTHHHHHHHS-CEEETTEEECCCHHHHHHH
T ss_pred cccccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC--------ccccccccccccc-ccccccCccchhhHHHHHH
Confidence 3889999999999999999999999999852 3599998765543 4678887776666677899
Q ss_pred HHHHHhhhhheeeccCcccccCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhh
Q 022529 191 EIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 270 (295)
Q Consensus 191 qv~l~G~~E~~r~~~G~~~~~~d~~~PGg~FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~ 270 (295)
|+++||++|.+|+.+- +.++..||||+||||||.+|+++++++|++|||||||||+||+|+++|+++||+||++||.
T Consensus 151 qv~lmG~~E~~R~~~~---~~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~ 227 (243)
T 3pl9_A 151 EVLVIGYIEFQRNAEL---DTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWV 227 (243)
T ss_dssp HHHHHHHHHHHHHSCC---CTTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHhhccc---CCccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9999999999998751 3345679999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCccchHHHHh
Q 022529 271 KHLSDPFANNLLTVI 285 (295)
Q Consensus 271 ~h~adP~~~n~~~~~ 285 (295)
+|++||+||||++++
T Consensus 228 ~HladP~~~ni~~~~ 242 (243)
T 3pl9_A 228 THLSDPLHTTILDRF 242 (243)
T ss_dssp HHHHCSGGGSTTTTT
T ss_pred HHhcCcchhhhhhhc
Confidence 999999999999875
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=5.9e-60 Score=438.06 Aligned_cols=196 Identities=41% Similarity=0.770 Sum_probs=132.0
Q ss_pred hhhhcCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCC
Q 022529 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (295)
Q Consensus 72 ~~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G 151 (295)
...|||++|++|+|+ .+.|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||++++.|
T Consensus 56 ~~~~~~~~r~~wlpg-----~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G 130 (269)
T 2wsc_2 56 VCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLG 130 (269)
T ss_dssp -------------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTT
T ss_pred eecccCCCcccccCC-----CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCC
Confidence 456899999999996 789999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhhheeecc----Cccc----------ccCCCCCC
Q 022529 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLVI----------DLEDKLHP 217 (295)
Q Consensus 152 ~~~~p~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~qv~l~G~~E~~r~~~----G~~~----------~~~d~~~P 217 (295)
... .+.|+++|.. .|+.... .++++|+++||++|.+|+.+ |... ...|..||
T Consensus 131 ~~~--~p~w~~aG~~-------~~~~~~~-----~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~P 196 (269)
T 2wsc_2 131 ILN--TPSWYTAGEQ-------EYFTDTT-----TLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYP 196 (269)
T ss_dssp SSS--CCCCCSTTSS-------SSCCCTT-----SHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCT
T ss_pred ccc--Cccccccchh-------hhhcchH-----HHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCC
Confidence 653 3459887642 3554432 23467888899999988753 2110 11245799
Q ss_pred CCC-CCCCCCCC-ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhh-hhhcCCccchHHHHhhc
Q 022529 218 GGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA-KHLSDPFANNLLTVISG 287 (295)
Q Consensus 218 Gg~-FDPLgl~~-dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~-~h~adP~~~n~~~~~~~ 287 (295)
||+ ||||||.+ |+++++++|++||||||||||||+|+++|+.+||++|++||. +|++|| |||+++++..
T Consensus 197 G~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~ 268 (269)
T 2wsc_2 197 GGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTP 268 (269)
T ss_dssp TCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCC
T ss_pred CCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccC
Confidence 999 99999985 788899999999999999999999999999999999999999 999999 9999998765
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.2e-57 Score=423.96 Aligned_cols=200 Identities=44% Similarity=0.754 Sum_probs=113.0
Q ss_pred cCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhH------HHHHHHhhhhcceeheeccchhhhhhhcc
Q 022529 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------SKYQAYELIHARWAMLGAAGFIIPEAFNK 149 (295)
Q Consensus 76 ~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l------~~~ReaELkHGR~AMLA~vG~ivpE~~~~ 149 (295)
||+||++|||+ .+.|+||||++|||+||||||| +|++++ +|||++|||||||||||++|++++|+++.
T Consensus 52 ~g~~R~~wlP~-----~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~ 125 (276)
T 2wsc_3 52 QGSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125 (276)
T ss_dssp ---------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSS
T ss_pred cCCCccccCCC-----CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcc
Confidence 89999999995 7899999999999999999999 678888 99999999999999999999999999988
Q ss_pred CCCCCCC-cchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhhheeecc----Cccc------------ccC
Q 022529 150 FGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLVI------------DLE 212 (295)
Q Consensus 150 ~G~~~~p-~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~qv~l~G~~E~~r~~~----G~~~------------~~~ 212 (295)
.|..... ...|++.+.+...+ ..+|++.... ++++|+++||++|.+|+.+ |... ...
T Consensus 126 ~g~~~~~~p~~w~~~g~ip~aG-~~~~~~~~~~-----l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~ 199 (276)
T 2wsc_3 126 AGLIPQETALPWFRTGFIPPAG-TYNYWADSYT-----LFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSG 199 (276)
T ss_dssp CCCCCCSSCCSSSSCCCC------CCCSCCCCS-----TTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCS
T ss_pred cccccccCcchhhhhhcccchh-HHHHhccchH-----HHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccc
Confidence 7754321 23599877643322 3567765532 3467888899999988654 2110 122
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhhc
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 287 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~~ 287 (295)
|..||||+ ||||||.+|+++++++|++||||||||||||+|+++|+++||++|++||.+|++||||||+++++..
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-------------------
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccC
Confidence 45799998 9999999988889999999999999999999999999999999999999999999999999998765
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=1.9e-58 Score=424.74 Aligned_cols=191 Identities=39% Similarity=0.736 Sum_probs=126.3
Q ss_pred hhhcCC-CcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCC
Q 022529 73 AKWYGP-DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (295)
Q Consensus 73 ~~~~g~-~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G 151 (295)
..||++ ||++|+|+ .+.|+||||++|||+|||||||++|+++++|||++|||||||||||++|++++|+++..|
T Consensus 45 ~~~~~~~~r~~~~pg-----~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g 119 (251)
T 2wsc_4 45 ASFKVEAKKGEWLPG-----LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 119 (251)
T ss_dssp -----------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSC
T ss_pred ccccCcchhhhccCC-----CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCC
Confidence 368999 89999985 789999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhhheeecc----Cccc----------ccCCCCCC
Q 022529 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLVI----------DLEDKLHP 217 (295)
Q Consensus 152 ~~~~p~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~qv~l~G~~E~~r~~~----G~~~----------~~~d~~~P 217 (295)
... .+.|+++|.. +|++.... ++++|+++||++|.+|+.+ |... +..|..||
T Consensus 120 ~~~--~p~w~~aG~~-------~~~~~~~~-----l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yP 185 (251)
T 2wsc_4 120 IIN--VPKWYAAGKE-------EYFASSST-----LFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYP 185 (251)
T ss_dssp SSC--CCCCSCCCSS-------SCSSCSSC-----TTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSS
T ss_pred ccC--CccccccchH-------hhhccchH-----HHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCC
Confidence 543 3469887642 45554322 2456888899999987653 2110 00123689
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhhc
Q 022529 218 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 287 (295)
Q Consensus 218 Gg~FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~~ 287 (295)
||+|||||+.+ ++++|+|||||||| ||||+||++|+.+||++|++||.+|++||+|||+++++.+
T Consensus 186 Gg~FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 250 (251)
T 2wsc_4 186 GGIFNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGG 250 (251)
T ss_dssp CCTTCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC----
T ss_pred CCccCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhcC
Confidence 99999999975 66789999999999 9999999999999999999999999999999999998754
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=8.7e-56 Score=404.77 Aligned_cols=192 Identities=43% Similarity=0.798 Sum_probs=139.7
Q ss_pred CcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCCCCCCCcc
Q 022529 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158 (295)
Q Consensus 79 ~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G~~~~p~~ 158 (295)
.|..|+|+ .+.|+||||++|||+||||+||++|+++++||||+|||||||||||++|+++||+++. .
T Consensus 44 m~~~w~P~-----~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~ 110 (241)
T 2wsc_1 44 MAAHWMPG-----EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------G 110 (241)
T ss_dssp ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C
T ss_pred cccccCCC-----CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------C
Confidence 45679996 7899999999999999999999999999999999999999999999999999999753 1
Q ss_pred hhhhccc-cccCCCccccccccchh-HHHHHHHHHHHHHhhhhheeeccCcccccCCCCCCCCCCCCCCCCCChHHHHHH
Q 022529 159 VWFKTGA-LLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALL 236 (295)
Q Consensus 159 ~W~~aG~-~~l~~~~l~y~g~~~pi-~~~~~~~~qv~l~G~~E~~r~~~G~~~~~~d~~~PGg~FDPLgl~~dpe~~~~~ 236 (295)
.|++++. ..+.++...|++.+.+. .+..++++|+++||++|.+|..+. +.+++.||||.||||||.+|+++++++
T Consensus 111 ~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~---~~~~~~yPgg~fDPlgl~~~~~~~~~~ 187 (241)
T 2wsc_1 111 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK---DPEKKKYPGGAFDPLGYSKDPKKLEEL 187 (241)
T ss_dssp -----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC---SSCCSSSCSCCSCSSSCSCSSSSCCCS
T ss_pred ccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCCCCCCcccccccccchhHHHHH
Confidence 3555443 12344445676665543 344566889999999999987643 345678999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHh-hccCCcchhhhhhhhcCCccchHHHHhh
Q 022529 237 KVKEIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHLSDPFANNLLTVIS 286 (295)
Q Consensus 237 k~kELKNGRLAMlAilG~~~Q~-~vTG~gPl~nL~~h~adP~~~n~~~~~~ 286 (295)
|++|||||||||+|++|+++|+ .+||++|++||.+|++||||||+++++.
T Consensus 188 r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~ 238 (241)
T 2wsc_1 188 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238 (241)
T ss_dssp CTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC--------
T ss_pred HHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeec
Confidence 9999999999999999999999 5899999999999999999999998753
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.39 E-value=2.6e-13 Score=123.44 Aligned_cols=50 Identities=28% Similarity=0.488 Sum_probs=46.8
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccC
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 262 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG 262 (295)
|+..|||+ ||||||++|++.++++|..||||||+||+|++|+++|++++.
T Consensus 37 dG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 56689999 999999999999999999999999999999999999998764
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.36 E-value=3.8e-14 Score=130.35 Aligned_cols=54 Identities=39% Similarity=0.677 Sum_probs=39.3
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 266 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl 266 (295)
|+.+|||+ ||||||.+|+|+++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 67 ~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp --------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 45689999 9999999999999999999999999999999999999999998766
No 9
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.35 E-value=1.4e-13 Score=125.78 Aligned_cols=50 Identities=38% Similarity=0.630 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCC
Q 022529 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (295)
Q Consensus 101 ~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G 151 (295)
.+|||+ ||||||++++++++++|++||||||+||+|++|++++|+++..|
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~G 221 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKG 221 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 589998 99999999999999999999999999999999999999988654
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.33 E-value=9.7e-14 Score=128.68 Aligned_cols=54 Identities=35% Similarity=0.618 Sum_probs=36.3
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 266 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl 266 (295)
++..|||+ ||||||.+|+|+++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 78 ~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 34579999 9999999999999999999999999999999999999999876544
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.31 E-value=1.9e-13 Score=127.11 Aligned_cols=54 Identities=22% Similarity=0.424 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCC
Q 022529 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (295)
Q Consensus 98 L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G 151 (295)
.|..+|||++||||||++++++++++|++||||||+||||++|++++|+++..|
T Consensus 199 ~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g 252 (276)
T 2wsc_3 199 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252 (276)
T ss_dssp SSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSC
T ss_pred ccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 355789999999999999888899999999999999999999999999988655
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.22 E-value=9.3e-13 Score=120.43 Aligned_cols=50 Identities=34% Similarity=0.512 Sum_probs=45.3
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccC
Q 022529 213 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 262 (295)
Q Consensus 213 d~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG 262 (295)
++..|||+ ||||||.+|+|+++++|.+||||||+||+|++|+++|++++.
T Consensus 59 ~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp --CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred cCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 45689999 999999999999999999999999999999999999998753
Done!