BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022531
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GYU|A Chain A, Nuclear Receptor Daf-12 From Parasitic Nematode
           Strongyloides Stercoralis In Complex With Its
           Physiological Ligand Dafachronic Acid Delta 7
          Length = 244

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 42  KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 101
           K    Y +LLH Y  +   E+AE+ F  + ++ ++   +  N  +TL++  G   + A +
Sbjct: 177 KLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAEN-AVTLFLGAGNTTEAASL 235

Query: 102 VEEI 105
            +E 
Sbjct: 236 PKEF 239


>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
           Longissima
 pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
           Longissima
 pdb|1SL9|A Chain A, Obelin From Obelia Longissima
          Length = 195

 Score = 27.7 bits (60), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 15/98 (15%)

Query: 171 SSTLVEAEKSITQRQWIT-----YDFLIILYAGLGNKDKI-----DQIWKSLRMTKQKMT 220
           S   V+ +      +WI      +DFL I   G    D+I     D I   L  T ++ T
Sbjct: 3   SKYAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQ-T 61

Query: 221 SRNYICILSSYLMLG--HLKEVG--EIIDQWKQSATSD 254
            R+ +C+ + +   G  + KE+   + +D WKQ ATS+
Sbjct: 62  KRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSE 99


>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
           Bioluminescence Suggests Neutral Coelenteramide As The
           Primary Excited State
          Length = 195

 Score = 27.7 bits (60), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 15/98 (15%)

Query: 171 SSTLVEAEKSITQRQWIT-----YDFLIILYAGLGNKDKI-----DQIWKSLRMTKQKMT 220
           S   V+ +      +WI      +DFL I   G    D+I     D I   L  T ++ T
Sbjct: 3   SKYAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQ-T 61

Query: 221 SRNYICILSSYLMLG--HLKEVG--EIIDQWKQSATSD 254
            R+ +C+ + +   G  + KE+   + +D WKQ ATS+
Sbjct: 62  KRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSE 99


>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
           Determined By Sulfur Sas
          Length = 195

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 15/98 (15%)

Query: 171 SSTLVEAEKSITQRQWIT-----YDFLIILYAGLGNKDKI-----DQIWKSLRMTKQKMT 220
           S   V+ +      +WI      +DFL I   G    D+I     D I   L  T ++ T
Sbjct: 3   SKYAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQ-T 61

Query: 221 SRNYICILSSYLMLG--HLKEVG--EIIDQWKQSATSD 254
            R+ +C+ + +   G  + KE+   + +D WKQ ATS+
Sbjct: 62  KRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSE 99


>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
           Longissima
          Length = 195

 Score = 27.7 bits (60), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 15/98 (15%)

Query: 171 SSTLVEAEKSITQRQWIT-----YDFLIILYAGLGNKDKI-----DQIWKSLRMTKQKMT 220
           S   V+ +      +WI      +DFL I   G    D+I     D I   L  T ++ T
Sbjct: 3   SKYAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQ-T 61

Query: 221 SRNYICILSSYLMLG--HLKEVG--EIIDQWKQSATSD 254
            R+ +C+ + +   G  + KE+   + +D WKQ ATS+
Sbjct: 62  KRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSE 99


>pdb|3GYT|A Chain A, Nuclear Receptor Daf-12 From Parasitic Nematode
           Strongyloides Stercoralis In Complex With Its
           Physiological Ligand Dafachronic Acid Delta 4
          Length = 244

 Score = 27.3 bits (59), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 42  KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 101
           K    Y +LLH Y  +   E+AE+ F  + ++ ++   +  N  +TL++  G   + A +
Sbjct: 177 KLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAEN-AVTLFLGAGNTTEAASL 235

Query: 102 VEEI 105
            +E 
Sbjct: 236 PKEF 239


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,254,753
Number of Sequences: 62578
Number of extensions: 309166
Number of successful extensions: 963
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 8
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)