BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022531
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/293 (62%), Positives = 237/293 (80%), Gaps = 1/293 (0%)
Query: 1 MVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT 60
MV H+E +SD+DYA+RIDL++KVFGI + ERYFEGL + +KT+ETYT+LLH YA +K T
Sbjct: 113 MVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQT 172
Query: 61 EKAEELFERVKQSN-LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 119
E+AE LF+R+ +S+ L+F A+ YNEMMTLYMSVGQVEKV V+E +K+K V PDIFTYNL
Sbjct: 173 ERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNL 232
Query: 120 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 179
W+SSCAAT NID+++K L+EM D+ ++ WV+Y++L +IYI +S + NAES+ VEAEK
Sbjct: 233 WLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEK 292
Query: 180 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 239
SI+QR+WITYDFL+IL+ GLGNK IDQIWKSLR T Q ++SR+YIC+LSSYLMLGHL+E
Sbjct: 293 SISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLRE 352
Query: 240 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 292
EII QWK+S T++FD SAC R+L AF DVGL A+ FH++L+ C+ N
Sbjct: 353 AEEIIHQWKESKTTEFDASACLRILNAFRDVGLEGIASGFHLILVHNKCSLEN 405
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 161/268 (60%), Gaps = 2/268 (0%)
Query: 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVK 71
SD A +DL+ K I +GE YF LP ++KT TY +LL+ Y TEKAE L ++K
Sbjct: 91 SDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMK 150
Query: 72 QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 131
+ N++ +++ YN +MTLY G+ EKV +++E+K +NV+PD +TYN+W+ + AAT +I
Sbjct: 151 ELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDIS 210
Query: 132 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 191
V++ ++EM+ D + DW Y N+ +IY+ A AE + L E E TQR + Y F
Sbjct: 211 GVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKA-LQELEMKNTQRDFTAYQF 269
Query: 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251
LI LY LG ++ +IW+SLR+ K ++ Y+ ++ + L L + +W Q+
Sbjct: 270 LITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEW-QAN 328
Query: 252 TSDFDISACNRLLGAFSDVGLTEKANEF 279
S +DI N L+GA++ GL +KANE
Sbjct: 329 CSTYDIRIVNVLIGAYAQEGLIQKANEL 356
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 166/291 (57%), Gaps = 4/291 (1%)
Query: 1 MVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT 60
MV ++ L DYA +DL++K+ G++S E++FE +P + T+LLH Y K +
Sbjct: 119 MVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLS 178
Query: 61 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 120
+KAE LFE++ + + L YN M+++Y+S GQ EKV ++++E+K + PDI TYNLW
Sbjct: 179 DKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIR-TSPDIVTYNLW 237
Query: 121 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 180
+++ A+ +++ +K + + + + DWV Y L N+Y ++ A + L E EK
Sbjct: 238 LTAFASGNDVEGAEKVYLK-AKEEKLNPDWVTYSVLTNLYAKTDNVEKARLA-LKEMEKL 295
Query: 181 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 240
++++ + Y LI L+A LG+KD ++ WK ++ + +KM Y+ ++S+ + LG ++
Sbjct: 296 VSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQA 355
Query: 241 GEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 291
+ D+W +S + D N +L + + +F+ +++K P+
Sbjct: 356 KGLYDEW-ESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPS 405
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 151/296 (51%), Gaps = 10/296 (3%)
Query: 1 MVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGL---PLSAKTSET-YTALLHLYAG 56
M K+ S D A R+DL+ K G+ GE YFE L +S + +++ Y LL Y
Sbjct: 96 MENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVK 155
Query: 57 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT 116
K ++AE L E++ +NEMM LY + GQ EKV +VV +K + ++ +
Sbjct: 156 NKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLS 215
Query: 117 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV- 175
YNLW+++C + V+ EM D W L N+YI + E + LV
Sbjct: 216 YNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGF---DEKARLVL 272
Query: 176 -EAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 234
+AEK + + + Y FLI LYA LGNK+ + ++W+ + +++ NYIC+LSS +
Sbjct: 273 EDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKT 332
Query: 235 GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290
G L+E + +W ++ ++D+ N LLGA+ G KA H +L++ P
Sbjct: 333 GDLEEAERVFSEW-EAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTP 387
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 148 bits (373), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 154/290 (53%), Gaps = 2/290 (0%)
Query: 5 KEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAE 64
+ F LS SD A ++DL+ KV GI E +F LP + K Y +LL+ Y AK EKAE
Sbjct: 130 ERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAE 189
Query: 65 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 124
L ++ + + L +N MMTLYM++ + +KV +V E+K+K++ DI++YN+W+SSC
Sbjct: 190 ALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSC 249
Query: 125 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 184
+ ++++++ +M D +W + + +YI AE + L + E IT R
Sbjct: 250 GSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDA-LRKVEARITGR 308
Query: 185 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 244
I Y +L+ LY LGNK ++ ++W + + + Y ++SS + +G ++ ++
Sbjct: 309 NRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVY 368
Query: 245 DQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 294
++W S +D N L+ A+ E A +++ P++++
Sbjct: 369 EEW-LPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSST 417
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 154/287 (53%), Gaps = 4/287 (1%)
Query: 1 MVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT 60
M H+ +S+ D A R+DL+ KV G+ E++FE +P+ + Y ALL+ YA K
Sbjct: 96 MSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVL 155
Query: 61 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 120
KAE++F+ +K+ L YN M+ LY+ G+ V ++ E++ + V PDIFT N
Sbjct: 156 HKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTR 215
Query: 121 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 180
+ + + +++ ++KFL D G DW Y + N YI A L L ++E+
Sbjct: 216 LHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAG-LTEKALEMLRKSEQM 274
Query: 181 I-TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 239
+ Q++ Y+ L+ Y G K+++ ++W SL + YI ++S+ L + ++E
Sbjct: 275 VNAQKRKHAYEVLMSFYGAAGKKEEVYRLW-SLYKELDGFYNTGYISVISALLKMDDIEE 333
Query: 240 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286
V +I+++W ++ S FDI + L+ + G+ EKA E +L+QK
Sbjct: 334 VEKIMEEW-EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQK 379
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 144 bits (363), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 155/287 (54%), Gaps = 3/287 (1%)
Query: 5 KEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSE-TYTALLHLYAGAKWTEKA 63
++ S SD+A +DL+ K G+ + E YF L SAK + TY AL++ Y EKA
Sbjct: 132 RKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKA 191
Query: 64 EELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 123
+ FE + + N N+L +N MM++YM + Q EKV ++V+ +K++ + P TY++W+ S
Sbjct: 192 KAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQS 251
Query: 124 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 183
C + ++D ++K +DEM DS W + NL IY T + L S L E+ +
Sbjct: 252 CGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIY-TKAGLYEKADSALKSMEEKMNP 310
Query: 184 RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI 243
++ FL+ LYAG+ ++ ++W+SL+ + ++ + +Y+ +L + LG L + +I
Sbjct: 311 NNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKI 370
Query: 244 IDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290
+W +S +D+ N + + + E+A + ++K+ P
Sbjct: 371 FTEW-ESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGP 416
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 140/273 (51%), Gaps = 2/273 (0%)
Query: 4 HKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKA 63
KE + SD+A R++L+ K G+ + E YF L S K TY +LL+ Y K KA
Sbjct: 100 RKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKA 159
Query: 64 EELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 123
+ FE + N N+L +N +M +YM +GQ EKV +V +K K++ P TY++WI S
Sbjct: 160 KAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQS 219
Query: 124 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 183
C + ++D V+K LDEM + G W + NL IYI AE + L E ++
Sbjct: 220 CGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEA-LKSLENNMNP 278
Query: 184 RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI 243
Y FLI LY G+ N ++ ++W L+ + + +Y+ +L + L + V ++
Sbjct: 279 DVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKV 338
Query: 244 IDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 276
+W +S +D+ N + ++ + E+A
Sbjct: 339 FAEW-ESTCWTYDMRMANVAISSYLKQNMYEEA 370
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 148/287 (51%), Gaps = 2/287 (0%)
Query: 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELF 67
V S +++A +DL+ +V+G + E YFE L K +TY ALL+ Y + EK+ F
Sbjct: 90 VFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHF 149
Query: 68 ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT 127
E++K+ ++L YN +M LY ++GQ EKV V+EE+K +NV PD ++Y + I++ A
Sbjct: 150 EKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAM 209
Query: 128 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI 187
+++++ L +M + DW Y YI A L +E + ++
Sbjct: 210 YDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRA-VELLKMSENRLEKKDGE 268
Query: 188 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQW 247
Y+ LI LYA LG K ++ ++W + ++ +++Y+ +L S + + L E E++ +W
Sbjct: 269 GYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEW 328
Query: 248 KQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 294
K S +D N ++ + + EKA L ++ A T S
Sbjct: 329 KSSGNC-YDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPES 374
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 140/276 (50%), Gaps = 10/276 (3%)
Query: 9 LSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE-KAEELF 67
L D+A R+ L+ V G+ E++FE +P +A+ YT+LL+ YA + T KAE F
Sbjct: 102 LIPEDFAARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATF 161
Query: 68 ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT 127
++++ L + YN MM+LY ++ EKV ++ E+K +V D T N + +A
Sbjct: 162 QKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAV 221
Query: 128 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI 187
++ +++KFL++ G +W +++ Y+ A A L E+ + Q+
Sbjct: 222 CDVTEMEKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKA-MKMLRLTEQLVDQKSLK 280
Query: 188 T-YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEI 243
+ YD L+ LY GN++++ ++WK + K K+ R+ Y ++ S L + + EI
Sbjct: 281 SAYDHLMKLYGEAGNREEVLRVWK---LYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEI 337
Query: 244 IDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 279
W +S +FD L + D G+TEKA +
Sbjct: 338 YKVW-ESLPLEFDHRIPTMLASGYRDRGMTEKAEKL 372
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGA--KWTEKAEELFERV 70
DYA R+ L V G+ E+YFE +P + K Y ALL YA + +E+ +
Sbjct: 438 DYAARLYLTENVLGLEEAEKYFENIPENMKDYSVYVALLSSYAKSDKNLGNMVDEILREM 497
Query: 71 KQSNLSFNALMYNEMMTLYMSVGQVEKVAL 100
+++N+ + + N ++ +Y + +++ + +
Sbjct: 498 EENNVDPDLITVNHVLKVYAAESKIQAMEM 527
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK-----VA 99
E Y A L+L E+AE+ FE N+ N Y+ + L S + +K V
Sbjct: 437 EDYAARLYLTENVLGLEEAEKYFE-----NIPENMKDYSVYVALLSSYAKSDKNLGNMVD 491
Query: 100 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSG 145
++ E++ NV PD+ T N + AA I ++ F+ + G
Sbjct: 492 EILREMEENNVDPDLITVNHVLKVYAAESKIQAMEMFMRRWGTEDG 537
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 3/208 (1%)
Query: 3 THKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEK 62
+K+ +++ DYA+R+DL K+ G+ GE + +P S K Y LL A +K
Sbjct: 188 ANKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKK 247
Query: 63 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122
+E +F ++K + ++M+ L+ + + +K+A V+ ++++N+ P + TY + I
Sbjct: 248 SELVFNKMKDLGFPLSGFTCDQMLLLHKRIDR-KKIADVLLLMEKENIKPSLLTYKILID 306
Query: 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 182
AT +I +++ L+ M D G D+ + L + + + L + L E E
Sbjct: 307 VKGATNDISGMEQILETMK-DEGVELDF-QTQALTARHYSGAGLKDKAEKVLKEMEGESL 364
Query: 183 QRQWITYDFLIILYAGLGNKDKIDQIWK 210
+ + L+ +YA LG +D++ +IWK
Sbjct: 365 EANRRAFKDLLSIYASLGREDEVKRIWK 392
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 98
+S TY+ LL +Y K K ++L +R+ +S A ++ ++ LY+ G+VEK
Sbjct: 434 SSSTYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKA 489
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 25/226 (11%)
Query: 35 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 94
EG+ L +T + TA Y+GA +KAE++ + ++ +L N + +++++Y S+G+
Sbjct: 327 EGVELDFQT-QALTA--RHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYASLGR 383
Query: 95 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 154
++V + + + K F +L LN Q + + E Y
Sbjct: 384 EDEVKRIWKICESKPY----FEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYS 439
Query: 155 NLVNIYITASHLVN--------AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 206
L+ +Y+ L AES +EA T+D LI LY G +K D
Sbjct: 440 VLLRVYVDHKMLSKGKDLVKRMAESGCRIEA---------TTWDALIKLYVEAGEVEKAD 490
Query: 207 QIW-KSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251
+ K+ + + K+ +++ I+ Y G + +I + +++
Sbjct: 491 SLLDKASKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAG 536
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 12/280 (4%)
Query: 1 MVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT 60
++ + + L + +Y+ ++ K+ G+ GE+ F +P + Y L+
Sbjct: 123 IIRERPYRLGELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVI 182
Query: 61 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 120
A E +++++ + L+YN ++ + G+ + +A + +K P + TY++
Sbjct: 183 RLALEYMKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHIL 242
Query: 121 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 180
+ A NID V K D M +G + V Y L + A AE+ T E EKS
Sbjct: 243 MKLEANEHNIDGVLKAFDGMK-KAGVEPNEVSYCILAMAHAVARLYTVAEAYT-EEIEKS 300
Query: 181 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 240
IT W T D L+ILY LG + ++ + W +R + S++Y+ ++ +G+L
Sbjct: 301 ITGDNWSTLDILMILYGRLGKEKELARTWNVIRGF-HHVRSKSYLLATEAFARVGNLDRA 359
Query: 241 GEIIDQWKQ----SATSDFDISACNRLLGAFSDVGLTEKA 276
E+ + K T F N LL + GL EKA
Sbjct: 360 EELWLEMKNVKGLKETEQF-----NSLLSVYCKDGLIEKA 394
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 121/238 (50%), Gaps = 11/238 (4%)
Query: 4 HKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKA 63
+K+F + + DYA R+DL++KV G + GE Y + +P S + Y LL + A
Sbjct: 187 NKQFEMEERDYACRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTA 246
Query: 64 EELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 123
E +F ++K + N+M+ LY V + +K+A V+ ++++N+ P++ TY + I +
Sbjct: 247 EAVFNKMKDLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDT 305
Query: 124 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE-KSIT 182
++ +I +++ ++ M S G + ++ L+ + ++ L L E E +S+
Sbjct: 306 KGSSNDITGMEQIVETMK--SEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLE 363
Query: 183 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 240
+ + + D L + Y L +D++ ++WK + Y +L++ L G + +V
Sbjct: 364 ENRHMCKDLLSV-YGYLQREDEVRRVWKICEENPR------YNEVLAAILAFGKIDKV 414
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 23 KVFGIHSGERYFEG-LPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 80
K+ + E FE L +S + +S Y+ LL +Y K + ++L +++ S + AL
Sbjct: 410 KIDKVKDAEAVFEKVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGAL 469
Query: 81 MYNEMMTLYMSVGQVEKV-ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 139
++ ++ LY+ G+VEK + + + I+ K + P + ++ + ++ +K
Sbjct: 470 TWDAVIKLYVEAGEVEKAESSLSKAIQSKQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQR 529
Query: 140 MSCDSGGSDDWVKYVNLVNIYITA 163
M S W Y L+ Y+ A
Sbjct: 530 MKQAGYQSRFWA-YQTLIQAYVNA 552
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 104/204 (50%), Gaps = 5/204 (2%)
Query: 6 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEE 65
+F ++++YA+++DL+ KV + E + + +P S++ Y LL KAE+
Sbjct: 204 QFEFTEANYASQLDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAED 263
Query: 66 LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 125
+F ++K+ + N+++ LY S+ +K++ V+ ++R+N+ P TY+ I+S
Sbjct: 264 IFNKMKELKFPTSVFACNQLLLLY-SMHDRKKISDVLLLMERENIKPSRATYHFLINSKG 322
Query: 126 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE-KSITQR 184
+I ++K ++ + + D ++ + L YI A L + E E K + Q
Sbjct: 323 LAGDITGMEKIVETIKEEGIELDPELQSI-LAKYYIRAG-LKERAQDLMKEIEGKGLQQT 380
Query: 185 QWITYDFLIILYAGLGNKDKIDQI 208
W+ L+ LYA +G+ D + ++
Sbjct: 381 PWVCRS-LLPLYADIGDSDNVRRL 403
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
Y AL+ +Y K K +L +R+ + ++ ++ ++ LY+ G+V K L++
Sbjct: 450 PYFALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNRA 509
Query: 106 KRKNVVPDIFT 116
+ N + +FT
Sbjct: 510 TKDNKMRPMFT 520
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 4/202 (1%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY AL++ + ++A ++F VK MYN ++ Y +G+++ + EE+
Sbjct: 368 TYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
+R+ +VPD+ TYN I+ NI+ KK D+++ S G D V + L+ Y
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT--SKGLPDLVTFHILMEGYCRKGE 485
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-KMTSRNY 224
A + L E K + + +TY+ ++ Y GN + + ++ +M +Y
Sbjct: 486 SRKA-AMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASY 544
Query: 225 ICILSSYLMLGHLKEVGEIIDQ 246
+L Y G L++ ++++
Sbjct: 545 NVLLQGYSQKGKLEDANMLLNE 566
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 50 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN 109
L+ YA E E F+R +AL +M + + V V +E+ R+
Sbjct: 159 LVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRK 218
Query: 110 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160
+ P++FT+N+ I++ T +++ + +++M G S + V Y L++ Y
Sbjct: 219 IQPNVFTFNVVINALCKTGKMNKARDVMEDMKV-YGCSPNVVSYNTLIDGY 268
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 98/247 (39%), Gaps = 5/247 (2%)
Query: 46 TYTALLH-LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 104
+Y +L++ L G K +E A + +++ + + N + YN ++ + +++ +
Sbjct: 333 SYNSLINGLCNGGKISE-AISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGS 391
Query: 105 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164
+K + VP YN+ I + ID +EM G D Y L+
Sbjct: 392 VKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEME-REGIVPDVGTYNCLIAGLCRNG 450
Query: 165 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 224
++ A+ L + S +T+ L+ Y G K + K + K Y
Sbjct: 451 NIEAAKK--LFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTY 508
Query: 225 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284
++ Y G+LK + Q ++ ++++ N LL +S G E AN +L
Sbjct: 509 NIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEML 568
Query: 285 QKNCAPT 291
+K P
Sbjct: 569 EKGLVPN 575
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 11/216 (5%)
Query: 46 TYTALLHLY---AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 102
+Y L+ Y G KA+ + + + ++++S N +N ++ + + V
Sbjct: 260 SYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVF 319
Query: 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 162
+E+ ++V P++ +YN I+ I + D+M +G + + Y L+N +
Sbjct: 320 KEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKM-VSAGVQPNLITYNALINGFCK 378
Query: 163 ASHLVNA-ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 221
L A + V+ + ++ + Y+ LI Y LG D D M ++ +
Sbjct: 379 NDMLKEALDMFGSVKGQGAVPTTRM--YNMLIDAYCKLGKID--DGFALKEEMEREGIVP 434
Query: 222 R--NYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 255
Y C+++ G+++ ++ DQ D
Sbjct: 435 DVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDL 470
>sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protein At5g27270
OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2
Length = 1038
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 5 KEFVLSDSDYATRIDLMTKVFGIHSGERYFE-----GLPLSAKTSETYTALLHLYAGAKW 59
K L Y T I M + + +E G+P S +TY ++ +Y
Sbjct: 768 KNIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSI---QTYNTMISVYGRGLQ 824
Query: 60 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 119
+KA E+F ++S L + +Y M+ Y G++ + + E+++K + P +YN+
Sbjct: 825 LDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNM 884
Query: 120 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 179
+ CA + +V + L M +G D Y+ L+ +Y AESS EAEK
Sbjct: 885 MVKICATSRLHHEVDELLQAME-RNGRCTDLSTYLTLIQVY--------AESSQFAEAEK 935
Query: 180 SIT 182
+IT
Sbjct: 936 TIT 938
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 7/245 (2%)
Query: 35 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 94
EG+P TYT ++ YA + E+A + F +K + Y+ +++L + G
Sbjct: 287 EGVP---PNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGD 343
Query: 95 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 154
EK + E+++ + +VP +T +S T N + +M + +D+ ++ +
Sbjct: 344 WEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGL 403
Query: 155 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 214
++ IY +A+S E E+ TY + ++ GN K + + ++
Sbjct: 404 -IIRIYGKLGLFHDAQS-MFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKT 461
Query: 215 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTE 274
++ YI +L Y + ++ E S T D S+CN +L ++ + L E
Sbjct: 462 RDIPLSRFAYIVMLQCYAKIQNVDCAEEAFRAL--SKTGLPDASSCNDMLNLYTRLNLGE 519
Query: 275 KANEF 279
KA F
Sbjct: 520 KAKGF 524
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 11/174 (6%)
Query: 62 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 121
+AE + + N+ + + YN ++ + G+++ + + E + V I TYN I
Sbjct: 757 EAEHISRTCLEKNIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMI 816
Query: 122 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 181
S L +D+ + SG D Y N++ Y + A S E +K
Sbjct: 817 SVYGRGLQLDKAIEIFSNAR-RSGLYLDEKIYTNMIMHYGKGGKMSEA-LSLFSEMQKKG 874
Query: 182 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICI-LSSYLML 234
+ +Y+ ++ + A ++D++ +++ RN C LS+YL L
Sbjct: 875 IKPGTPSYNMMVKICATSRLHHEVDELLQAM--------ERNGRCTDLSTYLTL 920
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 1 MVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFE-----GLPLSAKTSETYTALLHLYA 55
M+ ++ LS Y + K+ + E F GLP ++ ++ +L+LY
Sbjct: 458 MMKTRDIPLSRFAYIVMLQCYAKIQNVDCAEEAFRALSKTGLPDASSCND----MLNLYT 513
Query: 56 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF 115
EKA+ +++ + F+ +Y M +Y G V + ++ ++ R+ V D
Sbjct: 514 RLNLGEKAKGFIKQIMVDQVHFDIELYKTAMRVYCKEGMVAEAQDLIVKMGREARVKD-- 571
Query: 116 TYNLWISSCAATLNI 130
N ++ + A +++I
Sbjct: 572 --NRFVQTLAESMHI 584
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 131/284 (46%), Gaps = 11/284 (3%)
Query: 19 DLMTKVFGI-HSGER---YFEGLPLSAKTSE--TYTALLHLYAGAKWTEKAEELFERVKQ 72
++M K +GI S E+ FE + T + TY L+ + A A K E++++
Sbjct: 509 NVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRE 568
Query: 73 SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 132
+ + + Y +++ ++ +GQ+ V +E+ N+ PD+ Y + I++ A T N+ Q
Sbjct: 569 TGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQ 628
Query: 133 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES--STLVEAEKSITQRQWITYD 190
+++ M ++G + V Y +L+ +Y +L AE+ L+++ T +
Sbjct: 629 AMSYVEAMK-EAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSN 687
Query: 191 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 250
+I LY+ K + I+ S++ + + + +L Y G +E +I Q ++
Sbjct: 688 CMINLYSERSMVRKAEAIFDSMKQ-RGEANEFTFAMMLCMYKKNGRFEEATQIAKQMREM 746
Query: 251 ATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 294
+S N +LG F+ G ++A E ++ P +++
Sbjct: 747 KILTDPLSY-NSVLGLFALDGRFKEAVETFKEMVSSGIQPDDST 789
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 8/203 (3%)
Query: 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 102
+S TY ++ Y + ++A E F+R+ + + + +N M+ +Y + GQ+ +V ++
Sbjct: 297 SSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLM 356
Query: 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 162
+ +K + PD TYN+ IS +I++ + EM D G D V Y L+ + +
Sbjct: 357 KTMKL-HCAPDTRTYNILISLHTKNNDIERAGAYFKEMK-DDGLKPDPVSYRTLLYAF-S 413
Query: 163 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM--TKQKMT 220
H+V + E + + T L +Y + +++ W + M+
Sbjct: 414 IRHMVEEAEGLIAEMDDDNVEIDEYTQSALTRMYV---EAEMLEKSWSWFKRFHVAGNMS 470
Query: 221 SRNYICILSSYLMLGHLKEVGEI 243
S Y + +Y G+L E +
Sbjct: 471 SEGYSANIDAYGERGYLSEAERV 493
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 11 DSDYATRIDLMTKV-FGIHSGERYFEGLPLSAKTSETYTAL-LHLYAGAKWTEKAEELF- 67
+S Y T ID+ +K +H+ + + + E T + L +Y A+ +KAEE F
Sbjct: 222 NSTYGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFK 281
Query: 68 -----ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 121
E S++ ++ YN M+ Y GQ+++ + + + + +VP T+N I
Sbjct: 282 KWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMI 340
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 117/267 (43%), Gaps = 6/267 (2%)
Query: 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSE--TYTALLHLYAGAKWTEKAEE 65
+L +S A I ++ K + S F GL + + +YT+L+ +A + +A
Sbjct: 170 MLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVN 229
Query: 66 LFERVKQSNLSFNALMYNEMMTLYMSVGQV-EKVALVVEEIKRKNVVPDIFTYNLWISSC 124
+F+++++ + YN ++ ++ +G K+ +VE++K + PD +TYN I+ C
Sbjct: 230 VFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCC 289
Query: 125 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 184
+ + +EM +G S D V Y L+++Y SH L E +
Sbjct: 290 KRGSLHQEAAQVFEEMKA-AGFSYDKVTYNALLDVY-GKSHRPKEAMKVLNEMVLNGFSP 347
Query: 185 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 244
+TY+ LI YA G D+ ++ + K Y +LS + G ++ I
Sbjct: 348 SIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIF 407
Query: 245 DQWKQSATSDFDISACNRLLGAFSDVG 271
++ + + +I N + + + G
Sbjct: 408 EEMRNAGCKP-NICTFNAFIKMYGNRG 433
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 107/250 (42%), Gaps = 3/250 (1%)
Query: 41 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 100
A + TY L+ ++A ++FE +K + S++ + YN ++ +Y + ++
Sbjct: 276 APDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMK 335
Query: 101 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160
V+ E+ P I TYN IS+ A +D+ + ++M+ + G D Y L++ +
Sbjct: 336 VLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA-EKGTKPDVFTYTTLLSGF 394
Query: 161 ITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 220
A V + S E + + T++ I +Y G ++ +I+ + +
Sbjct: 395 ERAGK-VESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPD 453
Query: 221 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 280
+ +L+ + G EV + + K++ + N L+ A+S G E+A +
Sbjct: 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVP-ERETFNTLISAYSRCGSFEQAMTVY 512
Query: 281 MLLLQKNCAP 290
+L P
Sbjct: 513 RRMLDAGVTP 522
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 97/233 (41%), Gaps = 14/233 (6%)
Query: 46 TYTALLHLYA--GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 103
TY +L+++ G W K L E++K ++ +A YN ++T ++ A V E
Sbjct: 245 TYNVILNVFGKMGTPWN-KITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFE 303
Query: 104 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163
E+K D TYN + + + K L+EM + G S V Y +L++ Y
Sbjct: 304 EMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN-GFSPSIVTYNSLISAYARD 362
Query: 164 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 223
L A AEK T+ TY L+ + G + I++ +R K
Sbjct: 363 GMLDEAMELKNQMAEKG-TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPN--- 418
Query: 224 YICILSSYLML----GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL 272
IC ++++ + G E+ +I D+ S DI N LL F G+
Sbjct: 419 -ICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSP-DIVTWNTLLAVFGQNGM 469
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY +L+++++ + K+EE+ + + + + YN ++ Y ++ + + E+
Sbjct: 666 TYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEM 725
Query: 106 KRKNVVPDIFTYNLWISSCAA 126
+ +VPD+ TYN +I S AA
Sbjct: 726 RNSGIVPDVITYNTFIGSYAA 746
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 2/168 (1%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
T +++ +Y + KA + + +K+ + + YN +M ++ K ++ EI
Sbjct: 631 TLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREI 690
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
K + PDI +YN I + + + EM +SG D + Y + Y S
Sbjct: 691 LAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR-NSGIVPDVITYNTFIGSYAADSM 749
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR 213
A + Q TY+ ++ Y L KD+ + LR
Sbjct: 750 FEEAIGVVRYMIKHGCRPNQN-TYNSIVDGYCKLNRKDEAKLFVEDLR 796
Score = 38.5 bits (88), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
T+ LL ++ + +F+ +K++ +N +++ Y G E+ V +
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
V PD+ TYN +++ A +Q +K L EM D + + Y +L++ Y
Sbjct: 516 LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME-DGRCKPNELTYCSLLHAYANGKE 574
Query: 166 L 166
+
Sbjct: 575 I 575
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 37/188 (19%)
Query: 46 TYTALLHLYAGAK-----------------------------------WTEKAEELFERV 70
TY +LLH YA K +AE F +
Sbjct: 561 TYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL 620
Query: 71 KQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 130
K+ S + N M+++Y V K V++ +K + P + TYN + + + +
Sbjct: 621 KERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADF 680
Query: 131 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD 190
+ ++ L E+ G D + Y ++ Y + + +A S E S ITY+
Sbjct: 681 GKSEEILREI-LAKGIKPDIISYNTVIYAYCRNTRMRDA-SRIFSEMRNSGIVPDVITYN 738
Query: 191 FLIILYAG 198
I YA
Sbjct: 739 TFIGSYAA 746
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 112/273 (41%), Gaps = 37/273 (13%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TYT+++ +K E+A +LF+ ++Q ++ N +MY ++ Y G+V++ L++E++
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558
Query: 106 KRKNVVPDIFTYNLWISS-CA--------------------ATLNIDQ--VKKFLDEMSC 142
KN +P+ T+N I CA T++ D + + L +
Sbjct: 559 LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618
Query: 143 D-----------SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 191
D SG D Y + Y L++AE E ++ TY
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSP-DLFTYSS 677
Query: 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251
LI Y LG + + K +R T + + ++ ++ L + + K+ G + S
Sbjct: 678 LIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSN 737
Query: 252 TSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284
+FD LL + +T A + L+L
Sbjct: 738 MMEFDTVV--ELLEKMVEHSVTPNAKSYEKLIL 768
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 96/244 (39%), Gaps = 3/244 (1%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
Y LL+ A ++ ++++ + + + N YN+M+ Y +G VE+ V +I
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166
+ PD FTY I ++D K +EM G + V Y +L++ A +
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPL-KGCRRNEVAYTHLIHGLCVARRI 304
Query: 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 226
A V+ + TY LI G K + + K + T K Y
Sbjct: 305 DEA-MDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363
Query: 227 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286
++ S ++ E++ Q + ++ N L+ + G+ E A + L+ +
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMP-NVITYNALINGYCKRGMIEDAVDVVELMESR 422
Query: 287 NCAP 290
+P
Sbjct: 423 KLSP 426
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 45/250 (18%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TYT L+ EKA EL ++ + L N + YN ++ Y G +E VVE +
Sbjct: 360 TYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM 419
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
+ + + P+ TYN I + N+ + L++M + D V Y +L++ + +
Sbjct: 420 ESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKM-LERKVLPDVVTYNSLIDGQCRSGN 477
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225
+A + ++ + QW TY + ID + KS R
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQW-TYTSM------------IDSLCKSKR------------ 512
Query: 226 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL-- 283
++E ++ D +Q + ++ L+ + G K +E H++L
Sbjct: 513 -----------VEEACDLFDSLEQKGVNP-NVVMYTALIDGYCKAG---KVDEAHLMLEK 557
Query: 284 -LQKNCAPTN 292
L KNC P +
Sbjct: 558 MLSKNCLPNS 567
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 65 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR-KNVVPDIFTYNLWISS 123
EL E++ + +++ NA Y +++ VG + V + ++R + + P +N +S
Sbjct: 746 ELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSC 805
Query: 124 CAATLNIDQVKKFLDEMSC 142
C ++ K +D+M C
Sbjct: 806 CCKLKKHNEAAKVVDDMIC 824
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 16/255 (6%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV-EKVALVVEEI 105
YT +LH Y+ EKA +LFER+K+ S + YN ++ ++ +G+ K+ V++E+
Sbjct: 213 YTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEM 272
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM-SCDSGGSDDWVKYVNLVNIYITAS 164
+ K + D FT + +S+CA + + K+F E+ SC G V Y L+ ++ A
Sbjct: 273 RSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSC--GYEPGTVTYNALLQVFGKAG 330
Query: 165 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR-- 222
A S L E E++ +TY+ L+ Y G + + + MTK+ +
Sbjct: 331 VYTEA-LSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIE--MMTKKGVMPNAI 387
Query: 223 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 282
Y ++ +Y G E ++ K++ + N +L S +G ++NE +
Sbjct: 388 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP-NTCTYNAVL---SLLGKKSRSNEMIKM 443
Query: 283 LL---QKNCAPTNAS 294
L C+P A+
Sbjct: 444 LCDMKSNGCSPNRAT 458
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 52/96 (54%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY +L+ +Y KAEE+ + +++S L + + YN ++ + G +++ ++ E+
Sbjct: 668 TYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEM 727
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 141
+ + P IFTYN ++S A +++ ++ M+
Sbjct: 728 TERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMA 763
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 50/95 (52%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
+ ++L ++ ++AE + E +++ LS + + YN +M +Y+ G+ K +++ ++
Sbjct: 634 FNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLE 693
Query: 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 141
+ + PD+ +YN I + + + L EM+
Sbjct: 694 KSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMT 728
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY ALL ++ A +A + + +++++ +++ YNE++ Y+ G ++ A V+E +
Sbjct: 318 TYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMM 377
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140
+K V+P+ TY I + D+ K M
Sbjct: 378 TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSM 412
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 35/222 (15%)
Query: 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 103
S TY L+ Y A ++++A + E + + + NA+ Y ++ Y G+ ++ +
Sbjct: 351 SVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFY 410
Query: 104 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS-----------------CDSGG 146
+K VP+ TYN +S +++ K L +M C + G
Sbjct: 411 SMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKG 470
Query: 147 SDDWVKYV-------------NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI 193
D +V V + N I+A +E V+A K + ++ +
Sbjct: 471 MDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSE----VDASKMYGEMTRAGFNACV 526
Query: 194 ILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY-LML 234
Y L N W+S M S+ + +SY LML
Sbjct: 527 TTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLML 568
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 112/265 (42%), Gaps = 10/265 (3%)
Query: 27 IHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE--KAEELFERVKQSNLSFNALMYNE 84
I E+ F+ + L+ YT + + A + + +A ++F + S + NA+ +N
Sbjct: 271 ISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNN 330
Query: 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM---S 141
+M +++ G+ EKV V ++K+ PD TYN I + N++ K L+ M
Sbjct: 331 LMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKK 390
Query: 142 CDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 201
C+ S N + YI VN + ++ + +TY+ L+ ++ G +
Sbjct: 391 CEVNAST-----FNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKS 445
Query: 202 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 261
D + ++ K + + + Y +++ + +GH ++ + + +S
Sbjct: 446 TDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYE 505
Query: 262 RLLGAFSDVGLTEKANEFHMLLLQK 286
+L G +K E ++QK
Sbjct: 506 MVLAQLRRAGQLKKHEELVEKMIQK 530
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/208 (16%), Positives = 81/208 (38%), Gaps = 3/208 (1%)
Query: 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 101
K+ Y ++ L + + A L + +K N+ + + ++ Y+ G +
Sbjct: 149 KSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHC 208
Query: 102 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 161
++ VPD +++ IS+ + + + F D S D + Y NLV +
Sbjct: 209 FNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFD--SLKDRFEPDVIVYTNLVRGWC 266
Query: 162 TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 221
A + AE E + + + TY +I G + ++ + + +
Sbjct: 267 RAGEISEAE-KVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNA 325
Query: 222 RNYICILSSYLMLGHLKEVGEIIDQWKQ 249
+ ++ ++ G ++V ++ +Q K+
Sbjct: 326 ITFNNLMRVHVKAGRTEKVLQVYNQMKK 353
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 5/251 (1%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TYTAL++ +A EKAEE+FE++++ L + +YN +M Y G A + +
Sbjct: 301 TYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM 360
Query: 106 KRKNVVPDIFTYNLWISSCA-ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164
+ PD +YN+ + + A L+ D F +EM G + ++ L++ Y A
Sbjct: 361 QHMGCEPDRASYNIMVDAYGRAGLHSDAEAVF-EEMK-RLGIAPTMKSHMLLLSAYSKAR 418
Query: 165 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 224
+ E+ +E + ++ + ++ LY LG K+++I + Y
Sbjct: 419 DVTKCEAIVKEMSENGVEPDTFVL-NSMLNLYGRLGQFTKMEKILAEMENGPCTADISTY 477
Query: 225 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284
+++ Y G L+ + E+ + K+ D+ +GA+S L K E ++
Sbjct: 478 NILINIYGKAGFLERIEELFVELKEKNFRP-DVVTWTSRIGAYSRKKLYVKCLEVFEEMI 536
Query: 285 QKNCAPTNASG 295
CAP +
Sbjct: 537 DSGCAPDGGTA 547
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 13/253 (5%)
Query: 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 102
T+ETY +++LY A + + +L+ ++ N Y ++ + G EK +
Sbjct: 263 TTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIF 322
Query: 103 EEIKRKNVVPDIFTYNLWISS---CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 159
E+++ + PD++ YN + S ++ + M C+ D Y +V+
Sbjct: 323 EQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEP----DRASYNIMVDA 378
Query: 160 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 219
Y A +AE + E ++ ++ L+ Y+ + K + I K M++ +
Sbjct: 379 YGRAGLHSDAE-AVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKE--MSENGV 435
Query: 220 TSRNYI--CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 277
++ +L+ Y LG ++ +I+ + + + DIS N L+ + G E+
Sbjct: 436 EPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTA-DISTYNILINIYGKAGFLERIE 494
Query: 278 EFHMLLLQKNCAP 290
E + L +KN P
Sbjct: 495 ELFVELKEKNFRP 507
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 35 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 94
E P +A S TY L+++Y A + E+ EELF +K+ N + + + + Y
Sbjct: 466 ENGPCTADIS-TYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKL 524
Query: 95 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140
K V EE+ PD T + +S+C++ ++QV L M
Sbjct: 525 YVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTM 570
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 26 GIHS-GERYFEGLPL--SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 82
G+HS E FE + A T +++ LL Y+ A+ K E + + + ++ + + +
Sbjct: 383 GLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVL 442
Query: 83 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140
N M+ LY +GQ K+ ++ E++ DI TYN+ I+ ++++++ E+
Sbjct: 443 NSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVEL 500
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL---MYNEMMTLYMSV-GQVEKV 98
T +TY L+ Y A E+AE + ++ ++S + +YN + M G E+
Sbjct: 189 TEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEA 248
Query: 99 ALVVEEIKRKNVVPDIFTYNLWIS 122
V + +KR P TYNL I+
Sbjct: 249 IDVFQRMKRDRCKPTTETYNLMIN 272
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 7/248 (2%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
Y L+ + K EKA ELF+ + N +Y +++ Y G+ + ++E +K
Sbjct: 153 YVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMK 212
Query: 107 RK-NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
N PD+ TY++ I S D+V+ L +M G + + Y L++ Y A
Sbjct: 213 SSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMR-RQGIRPNTITYNTLIDAYGKAKM 271
Query: 166 LVNAESSTLVE--AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 223
V E STL++ E W T + + + G G + ++ ++ + + + R
Sbjct: 272 FVEME-STLIQMLGEDDCKPDSW-TMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRT 329
Query: 224 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 283
+ +L SY G+ K++ ++ ++ Q + I N ++ AF G ++ L+
Sbjct: 330 FNILLDSYGKSGNYKKMSAVM-EYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLM 388
Query: 284 LQKNCAPT 291
+ P+
Sbjct: 389 QSERIFPS 396
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 14/213 (6%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY+ ++ A+ TE+ +E F+ + N+ N ++YN ++ Y G++ + E++
Sbjct: 625 TYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM 684
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
K K + P+ TY I + +++ K +EM + G + Y L++ Y
Sbjct: 685 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRME-GLEPNVFHYTALIDGYGKLGQ 743
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR---MTKQKMTSR 222
+V E L E ITY +I YA GN + ++ +R + +T +
Sbjct: 744 MVKVE-CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYK 802
Query: 223 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 255
+I G+LK+ G +++ +K S ++
Sbjct: 803 EFI--------YGYLKQ-GGVLEAFKGSDEENY 826
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 41 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 100
+ S TYT+L+ + E+A+ LFE ++ L N Y ++ Y +GQ+ KV
Sbjct: 690 SPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVEC 749
Query: 101 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160
++ E+ KNV P+ TY + I A N+ + + L+EM + G D + Y + Y
Sbjct: 750 LLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMR-EKGIVPDSITYKEFIYGY 808
Query: 161 ITASHLVNA 169
+ ++ A
Sbjct: 809 LKQGGVLEA 817
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 96/204 (47%), Gaps = 10/204 (4%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
+T ++ + E+A +LF +++++ ++ N + +N ++ G+ ++ + E++
Sbjct: 276 FTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMV 335
Query: 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166
+ + P + TY++ + I L EM+ G + + Y NL++ +I A L
Sbjct: 336 ERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMT-KKGFPPNVIVYNNLIDSFIEAGSL 394
Query: 167 VNA--ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK---SLRMTKQKMTS 221
A +V S+T TY+ LI Y G D +++ K S+ + +
Sbjct: 395 NKAIEIKDLMVSKGLSLTSS---TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSF 451
Query: 222 RNYICILSSYLML-GHLKEVGEII 244
+ IC+L S+LM L+ VGE++
Sbjct: 452 TSVICLLCSHLMFDSALRFVGEML 475
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 86/195 (44%), Gaps = 2/195 (1%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
+Y L+ G K ++A + + + L + Y+ ++ ++ +VE+ ++
Sbjct: 555 SYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDC 614
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
KR ++PD++TY++ I C ++ ++F DEM + V Y +L+ Y +
Sbjct: 615 KRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM-SKNVQPNTVVYNHLIRAYCRSGR 673
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225
L A K I+ TY LI + + ++ +++ +RM + +Y
Sbjct: 674 LSMALELREDMKHKGISPNSA-TYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 732
Query: 226 CILSSYLMLGHLKEV 240
++ Y LG + +V
Sbjct: 733 ALIDGYGKLGQMVKV 747
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 83 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140
N ++ G++++ + +EI + V D +YN IS C +D+ FLDEM
Sbjct: 522 NALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM 579
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 4/246 (1%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEE 104
+YTAL++ Y E + EL +R+K +S + L YN ++ G E + + E
Sbjct: 178 SYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAE 237
Query: 105 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164
++ + + PDI TYN +S+CA D+ + M+ D G D Y +LV +
Sbjct: 238 MRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN-DGGIVPDLTTYSHLVETFGKLR 296
Query: 165 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 224
L L E + +Y+ L+ YA G+ + ++ ++ + Y
Sbjct: 297 RLEKV-CDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTY 355
Query: 225 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284
+L+ + G +V ++ + K S T D D + N L+ F + G ++ ++
Sbjct: 356 SVLLNLFGQSGRYDDVRQLFLEMKSSNT-DPDAATYNILIEVFGEGGYFKEVVTLFHDMV 414
Query: 285 QKNCAP 290
++N P
Sbjct: 415 EENIEP 420
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 39/245 (15%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
YT ++ L +K E+F+ + +S + Y ++ Y G+ E +++ +K
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMK 203
Query: 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166
+ + P I TYN I++CA G DW + L
Sbjct: 204 NEKISPSILTYNTVINACAR-------------------GGLDWEGLLGL---------- 234
Query: 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 226
E Q +TY+ L+ A G D+ + +++++ Y
Sbjct: 235 -------FAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSH 287
Query: 227 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG-LTEKANEFHMLLLQ 285
++ ++ L L++V +++ + S S DI++ N LL A++ G + E FH +
Sbjct: 288 LVETFGKLRRLEKVCDLLGEMA-SGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQ-MQA 345
Query: 286 KNCAP 290
C P
Sbjct: 346 AGCTP 350
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 51/102 (50%)
Query: 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 101
+ TY+ LL+L+ + + +LF +K SN +A YN ++ ++ G ++V +
Sbjct: 350 PNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTL 409
Query: 102 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143
++ +N+ PD+ TY I +C + +K L M+ +
Sbjct: 410 FHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTAN 451
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 47/101 (46%)
Query: 40 SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 99
S + ET+ +LL+ +A +++E + R+ S + N +N + Y G+ E+
Sbjct: 488 SNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAV 547
Query: 100 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140
++++ PD T +S + +D+ ++ +EM
Sbjct: 548 KTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEM 588
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 36 GLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV 95
G+P + +T+ A + Y E+A + + +++S + ++++Y V
Sbjct: 522 GIP---RNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLV 578
Query: 96 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140
++ EE+K +++P I Y + ++ T D V + L+EM
Sbjct: 579 DECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM 623
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 102
+ + + +++ +Y E+A E+F R+K+ + +YN ++ + +++ + +V
Sbjct: 110 SEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVY 169
Query: 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 158
++KR P++FTYN+ + + +D KK L EMS + G D V Y +++
Sbjct: 170 RDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMS-NKGCCPDAVSYTTVIS 224
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 105/280 (37%), Gaps = 10/280 (3%)
Query: 14 YATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQS 73
Y T I M +V + G E Y AL++ + A EL + +
Sbjct: 219 YTTVISSMCEVGLVKEGRELAERF---EPVVSVYNALINGLCKEHDYKGAFELMREMVEK 275
Query: 74 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV 133
+S N + Y+ ++ + + GQ+E + ++ ++ P+I+T + + C
Sbjct: 276 GISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDA 335
Query: 134 KKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES--STLVEAEKSITQRQWITYDF 191
++M G + V Y LV + + ++V A S S + E S R TY
Sbjct: 336 LDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIR---TYGS 392
Query: 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251
LI +A G+ D IW + + Y ++ + KE +I+ +
Sbjct: 393 LINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKEN 452
Query: 252 TSDFDISACNRLLGAFSDVGLTEKANE-FHMLLLQKNCAP 290
+ + N + D G + A + F + Q C P
Sbjct: 453 CAP-SVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPP 491
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 121/280 (43%), Gaps = 10/280 (3%)
Query: 14 YATRIDLMTKVFGIHSGERYFEGLPLSAKTSE--TYTALL-HLYAGAKWTEKAEELFERV 70
Y T ID K+ ++ F+ + ++ TY +L+ L +W++ A + + V
Sbjct: 177 YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV 236
Query: 71 KQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 130
+ ++ N + + ++ +++ G+ + + EE+ R+ V PD+FTYN I+ +
Sbjct: 237 MR-DIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRV 295
Query: 131 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD 190
D+ K+ LD M G D V Y L+N + S V+ + E + ITY+
Sbjct: 296 DEAKQMLDLMV-TKGCLPDVVTYNTLINGF-CKSKRVDEGTKLFREMAQRGLVGDTITYN 353
Query: 191 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 250
+I Y G D +I+ + + R Y +L M +++ + + ++S
Sbjct: 354 TIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKS 410
Query: 251 ATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290
+ DI+ N ++ +G E A + L K P
Sbjct: 411 EI-ELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKP 449
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 40 SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 99
S TY+ LL+ EKA LFE +++S + + YN ++ +G VE
Sbjct: 377 SRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAW 436
Query: 100 LVVEEIKRKNVVPDIFTYNLWISS 123
+ + K + PD+ +Y IS
Sbjct: 437 DLFRSLSCKGLKPDVVSYTTMISG 460
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 108/250 (43%), Gaps = 7/250 (2%)
Query: 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 103
S Y +++ L +AEE F + + + + ++Y ++ + G + +
Sbjct: 316 SYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFY 375
Query: 104 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163
E+ +++ PD+ TY IS ++ + K EM C G D V + L+N Y A
Sbjct: 376 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFC-KGLEPDSVTFTELINGYCKA 434
Query: 164 SHLVNA--ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 221
H+ +A + +++A S +TY LI G+ D +++ + +
Sbjct: 435 GHMKDAFRVHNHMIQAGCS---PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNI 491
Query: 222 RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM 281
Y I++ G+++E +++ ++ ++A + D L+ A+ G +KA E
Sbjct: 492 FTYNSIVNGLCKSGNIEEAVKLVGEF-EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILK 550
Query: 282 LLLQKNCAPT 291
+L K PT
Sbjct: 551 EMLGKGLQPT 560
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/233 (18%), Positives = 96/233 (41%), Gaps = 3/233 (1%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
+Y ++H ++A L ++ + + + Y+ ++ Y G+++KV ++E +
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
KRK + P+ + Y I + + ++ EM G D V Y L++ +
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM-IRQGILPDTVVYTTLIDGFCKRGD 366
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225
+ A S E +TY +I + +G+ + +++ + + S +
Sbjct: 367 -IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425
Query: 226 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE 278
+++ Y GH+K+ + + Q+ S ++ L+ G + ANE
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSP-NVVTYTTLIDGLCKEGDLDSANE 477
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 104/272 (38%), Gaps = 11/272 (4%)
Query: 25 FGI-HSGERYFE-----GLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN 78
FG+ R FE GL LS + Y L L T A +F + + +N
Sbjct: 188 FGLLREARRVFEKMLNYGLVLSVDSCNVY--LTRLSKDCYKTATAIIVFREFPEVGVCWN 245
Query: 79 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLD 138
YN ++ +G++++ ++ ++ K PD+ +Y+ ++ +D+V K ++
Sbjct: 246 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 305
Query: 139 EMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG 198
M + ++ Y +++ + L AE + E + + Y LI +
Sbjct: 306 VMKRKGLKPNSYI-YGSIIGLLCRICKLAEAEEA-FSEMIRQGILPDTVVYTTLIDGFCK 363
Query: 199 LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS 258
G+ + + + Y I+S + +G + E G++ + D
Sbjct: 364 RGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEP-DSV 422
Query: 259 ACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290
L+ + G + A H ++Q C+P
Sbjct: 423 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSP 454
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 34 FEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 93
FE L+A T TYT L+ Y + +KA+E+ + + L + +N +M + G
Sbjct: 517 FEAAGLNADTV-TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 575
Query: 94 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY 153
+E ++ + K + P+ T+N + N+ +M C G D Y
Sbjct: 576 MLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM-CSRGVGPDGKTY 634
Query: 154 VNLVNIYITASHLVNA 169
NLV + A ++ A
Sbjct: 635 ENLVKGHCKARNMKEA 650
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 9/191 (4%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
Y ALL + + ++F+ + L +A + + Y G V V++ +
Sbjct: 245 AYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRM 304
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
KR ++VP+++T+N I + +D LDEM D W N + Y
Sbjct: 305 KRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWT--YNSIMAYHCDHC 362
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225
VN + L +++ TY+ ++ L +G D+ +IW+ M+ R +
Sbjct: 363 EVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEG-------MSERKFY 415
Query: 226 CILSSYLMLGH 236
+++Y ++ H
Sbjct: 416 PTVATYTVMIH 426
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 50 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN 109
LLH K A+E F + K + +A Y+ ++ + + V +E+ +N
Sbjct: 179 LLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERN 238
Query: 110 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169
V D+ YN + + + ++D K EM + G D + ++ Y A + +A
Sbjct: 239 CVVDLLAYNALLDALCKSGDVDGGYKMFQEMG-NLGLKPDAYSFAIFIHAYCDAGDVHSA 297
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 105/243 (43%), Gaps = 2/243 (0%)
Query: 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 104
+Y LL+ + AK K E LF + + ++ N YN ++ + + EK ++
Sbjct: 115 RSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDW 174
Query: 105 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164
+ ++ PD+F+Y+ I+ A +D + DEMS + G + D Y L++ ++
Sbjct: 175 MWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMS-ERGVAPDVTCYNILIDGFLKEK 233
Query: 165 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 224
A E S T++ +I + G D +IW+ ++ +++ Y
Sbjct: 234 DHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTY 293
Query: 225 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284
++ G++ + + ++ + S D+ N +LG F G +++ E ++
Sbjct: 294 SSLIHGLCDAGNVDKAESVFNELDERKAS-IDVVTYNTMLGGFCRCGKIKESLELWRIME 352
Query: 285 QKN 287
KN
Sbjct: 353 HKN 355
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 85/211 (40%), Gaps = 2/211 (0%)
Query: 33 YFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV 92
YFE + A +TY L+ + K EKA + + + + Y+ ++
Sbjct: 139 YFETAGV-APNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKA 197
Query: 93 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK 152
G+++ + +E+ + V PD+ YN+ I + + D + DS + VK
Sbjct: 198 GKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPN-VK 256
Query: 153 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL 212
N++ ++ V+ +++ ++ TY LI GN DK + ++ L
Sbjct: 257 THNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNEL 316
Query: 213 RMTKQKMTSRNYICILSSYLMLGHLKEVGEI 243
K + Y +L + G +KE E+
Sbjct: 317 DERKASIDVVTYNTMLGGFCRCGKIKESLEL 347
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY++L+H A +KAE +F + + S + + YN M+ + G++++ + +
Sbjct: 292 TYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIM 351
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQ 132
+ KN V +I +YN+ I ID+
Sbjct: 352 EHKNSV-NIVSYNILIKGLLENGKIDE 377
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 104
+TY+ LL + + A EL+ + QS L + +M+N ++ SVG+++ V+
Sbjct: 535 KTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMAN 594
Query: 105 IKRKNVVPDIFTYN 118
++ +N ++ TYN
Sbjct: 595 MEHRNCTANLVTYN 608
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/93 (18%), Positives = 38/93 (40%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
+ L+H + A + ++ N + N + YN +M + VG + ++ +
Sbjct: 572 HNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMY 631
Query: 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 139
+ + PDI +YN + + +F D+
Sbjct: 632 KMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDD 664
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY +L + +++ EL+ ++ N S N + YN ++ + G++++ ++ +
Sbjct: 327 TYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDEATMIWRLM 385
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
K D TY ++I +++ + E+ SGG D Y ++++
Sbjct: 386 PAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVE-SSGGHLDVYAYASIIDCLCKKKR 444
Query: 166 LVNAESSTLVE 176
L E+S LV+
Sbjct: 445 L--EEASNLVK 453
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY+AL+ Y + A LF+ +K + + +Y ++ +Y VG+VEK + EE+
Sbjct: 235 TYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM 294
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 159
KR P ++TY I +D+ F +M D G + D V NL+NI
Sbjct: 295 KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRD-GLTPDVVFLNNLMNI 347
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 109/282 (38%), Gaps = 39/282 (13%)
Query: 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY-------------------- 82
T + YT LL +Y EKA +LFE +K++ S Y
Sbjct: 267 TEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFY 326
Query: 83 ---------------NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC-AA 126
N +M + VG+VE++ V E+ P + +YN I + +
Sbjct: 327 KDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFES 386
Query: 127 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 186
++ +V + D+M DS ++ Y L++ Y + + A L E ++
Sbjct: 387 KAHVSEVSSWFDKMKADSVSPSEFT-YSILIDGYCKTNRVEKA-LLLLEEMDEKGFPPCP 444
Query: 187 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246
Y LI + ++++K L+ ++SR Y ++ + G L E ++ ++
Sbjct: 445 AAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNE 504
Query: 247 WKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 288
K + D+ A N L+ G+ +AN + + C
Sbjct: 505 MKNQGSGP-DVYAYNALMSGMVKAGMINEANSLLRKMEENGC 545
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 93/208 (44%), Gaps = 11/208 (5%)
Query: 35 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 94
+G P Y +L++ AK E A ELF+ +K++ + ++ +Y M+ + G+
Sbjct: 438 KGFP---PCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGK 494
Query: 95 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 154
+ + + E+K + PD++ YN +S I++ L +M + +D +
Sbjct: 495 LSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRAD-----I 549
Query: 155 NLVNIYIT--ASHLVNAESSTLVEAEK-SITQRQWITYDFLIILYAGLGNKDKIDQIWKS 211
N NI + A V + + E K S + +TY+ L+ +A G ++ ++ +
Sbjct: 550 NSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMRE 609
Query: 212 LRMTKQKMTSRNYICILSSYLMLGHLKE 239
++ + + Y IL + + H K+
Sbjct: 610 MKDKGFEYDAITYSSILDAVGNVDHEKD 637
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 6/163 (3%)
Query: 48 TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI-K 106
+ L+ AK KA +F + K + YN ++ + M GQ EKV V E+
Sbjct: 166 SELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCN 225
Query: 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166
+ PD TY+ ISS D + DEM + + + Y L+ IY +
Sbjct: 226 EGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKI-YTTLLGIYFKVGKV 284
Query: 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 209
A E +++ TY LI GLG ++D+ +
Sbjct: 285 EKA-LDLFEEMKRAGCSPTVYTYTELI---KGLGKAGRVDEAY 323
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 83/210 (39%), Gaps = 3/210 (1%)
Query: 67 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 126
F+++K ++S + Y+ ++ Y +VEK L++EE+ K P Y I++
Sbjct: 397 FDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK 456
Query: 127 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 186
+ + E+ + G V Y ++ + L A E + +
Sbjct: 457 AKRYEAANELFKELKENFGNVSSRV-YAVMIKHFGKCGKLSEA-VDLFNEMKNQGSGPDV 514
Query: 187 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246
Y+ L+ G ++ + + + + + ++ IL+ + G + E+ +
Sbjct: 515 YAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFET 574
Query: 247 WKQSATSDFDISACNRLLGAFSDVGLTEKA 276
K S D N LLG F+ G+ E+A
Sbjct: 575 IKHSGIKP-DGVTYNTLLGCFAHAGMFEEA 603
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 10/205 (4%)
Query: 38 PLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM-SVGQVE 96
P + Y A++ +Y+ + KA+EL + ++Q + + +N ++ + S G
Sbjct: 219 PTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTP 278
Query: 97 KVAL-VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 155
+A+ +++ ++ + PD TYN +S+C+ N+D K ++M D W Y
Sbjct: 279 NLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWT-YNA 337
Query: 156 LVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR-- 213
++++Y AE +E E +TY+ L+ +A N +K+ ++++ ++
Sbjct: 338 MISVYGRCGLAAEAE-RLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM 396
Query: 214 -MTKQKMTSRNYICILSSYLMLGHL 237
K +MT Y I+ Y G L
Sbjct: 397 GFGKDEMT---YNTIIHMYGKQGQL 418
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 92/186 (49%), Gaps = 2/186 (1%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
+ ++L +Y + +K ++++R+K++ L + YN ++ +Y + E+ L++++++
Sbjct: 930 WNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMR 989
Query: 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166
+ P + TY IS+ ++Q ++ +E+ G D Y ++ I +
Sbjct: 990 NLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEEL-LSKGLKLDRSFYHTMMKISRDSGSD 1048
Query: 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 226
AE L + + + T L++ Y+ GN + +++ +L+ T+ ++T+ Y
Sbjct: 1049 SKAE-KLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSS 1107
Query: 227 ILSSYL 232
++ +YL
Sbjct: 1108 VIDAYL 1113
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 1/187 (0%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY A++ +Y +AE LF ++ +A+ YN ++ + EKV V +++
Sbjct: 334 TYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQM 393
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
++ D TYN I +D + +M SG + D + Y L++ A+
Sbjct: 394 QKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANR 453
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225
V A ++ + E + TY LI YA G +++ + + + + K + Y
Sbjct: 454 TVEA-AALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYS 512
Query: 226 CILSSYL 232
+L L
Sbjct: 513 VMLDVLL 519
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 104
+TY +L+ + K E+AE+LFE + L + Y+ MM + G K +++
Sbjct: 998 DTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQM 1057
Query: 105 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163
+K + P + T +L + S +++ N + +K L + D+ + Y ++++ Y+ +
Sbjct: 1058 MKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLK-DTEVELTTLPYSSVIDAYLRS 1115
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 100/244 (40%), Gaps = 8/244 (3%)
Query: 52 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV 111
L +G A EL + V+ S L +A+ YN +++ ++ V E+++
Sbjct: 270 RLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQ 329
Query: 112 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 171
PD++TYN IS + ++ E+ G D V Y +L+ + + N E
Sbjct: 330 PDLWTYNAMISVYGRCGLAAEAERLFMELEL-KGFFPDAVTYNSLLYAF---ARERNTEK 385
Query: 172 STLV--EAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR-MTKQKMTSRNYICIL 228
V + +K + +TY+ +I +Y G D Q++K ++ ++ + + Y ++
Sbjct: 386 VKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLI 445
Query: 229 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 288
S E ++ + + + L+ ++ G E+A + +L+
Sbjct: 446 DSLGKANRTVEAAALMSEMLDVGIKP-TLQTYSALICGYAKAGKREEAEDTFSCMLRSGT 504
Query: 289 APTN 292
P N
Sbjct: 505 KPDN 508
Score = 38.5 bits (88), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 7 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA--KTSETYTALLHLYAGAKWTEKAE 64
F +S S +D + I ++ + + + T Y ++ L K AE
Sbjct: 853 FKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
Query: 65 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 121
+ ++++N ++N M+ +Y ++ +K V + IK + PD TYN I
Sbjct: 913 IMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLI 969
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 45/97 (46%)
Query: 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 103
S YT ++ Y K +KAE + ++QS + + +N +M+ Y G E+ +
Sbjct: 752 SPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFN 811
Query: 104 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140
+ R P + + N+ + + ++++ ++E+
Sbjct: 812 TMMRDGPSPTVESINILLHALCVDGRLEELYVVVEEL 848
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%)
Query: 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 102
T +TY+AL+ YA A E+AE+ F + +S + L Y+ M+ + + + K +
Sbjct: 472 TLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLY 531
Query: 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140
++ P Y L I D ++K + +M
Sbjct: 532 RDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDM 569
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 35/240 (14%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
T+TAL+ ++ ++A+EL++ + QS++ N + YN ++ G++ + +
Sbjct: 248 TFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLM 307
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
K P++ TYN IS +D+ K MSC+ G + D Y L++ Y
Sbjct: 308 ASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE-GFNADIFTYNTLIHGYCQVGK 366
Query: 166 L------------------------------VNAE-SSTLVEAEKSITQRQWITYDFLII 194
L VN E S LV+ + ++I I
Sbjct: 367 LRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNI 426
Query: 195 LYAGLGNKDKIDQIWK---SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251
+ GL DK+++ W+ L + K +R Y ++ G +E E+I + K+
Sbjct: 427 MIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEG 486
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 77/176 (43%), Gaps = 2/176 (1%)
Query: 63 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122
A EL +++ L + + YN ++T G+ A ++ ++ ++++ PD+ T+ I
Sbjct: 195 ALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALID 254
Query: 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 182
N+D+ ++ EM S + V Y +++N L +A+ + + A K
Sbjct: 255 VFVKQGNLDEAQELYKEM-IQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCF 313
Query: 183 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK 238
+TY+ LI + D+ ++++ + Y ++ Y +G L+
Sbjct: 314 P-NVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLR 368
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 7/247 (2%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
T+ +LLH + A L + +S N ++YN ++ G++ ++ E+
Sbjct: 143 TFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEM 202
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
++K + D+ TYN ++ + + L +M S + D V + L+++++ +
Sbjct: 203 EKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS-INPDVVTFTALIDVFVKQGN 261
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225
L A+ E +S +TY+ +I GL ++ K+ + K N +
Sbjct: 262 LDEAQ-ELYKEMIQSSVDPNNVTYNSII---NGLCMHGRLYDAKKTFDLMASKGCFPNVV 317
Query: 226 CILSSYLMLGHLKEVGEIIDQWKQSATSDF--DISACNRLLGAFSDVGLTEKANEFHMLL 283
+ + V E + +++ + F DI N L+ + VG A + +
Sbjct: 318 TYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM 377
Query: 284 LQKNCAP 290
+ + P
Sbjct: 378 VSRRVTP 384
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 43/249 (17%), Positives = 96/249 (38%), Gaps = 8/249 (3%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
++T L+H + A + ++ + + + + ++ + V ++ +V +
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
+ P++ YN I ++ + L+EM G D V Y L+ +
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEME-KKGLGADVVTYNTLLTGLCYSGR 226
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225
+A + L + K +T+ LI ++ GN D+ +++K + + + Y
Sbjct: 227 WSDA-ARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYN 285
Query: 226 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285
I++ M G L + + D ++ N L+ F + ++ M L Q
Sbjct: 286 SIINGLCMHGRLYDAKKTFDLMASKGCFP-NVVTYNTLISGFCKFRMVDEG----MKLFQ 340
Query: 286 K-NCAPTNA 293
+ +C NA
Sbjct: 341 RMSCEGFNA 349
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 105/255 (41%), Gaps = 47/255 (18%)
Query: 6 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSE--------TYTALLHLYAGA 57
E ++S + + T + G +R EG+ L + S+ TYT L+H + A
Sbjct: 387 ELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQA 446
Query: 58 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY 117
+ + A+ +F+++ + N L YN ++ G++ K +V E ++R + PDI+TY
Sbjct: 447 RDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 506
Query: 118 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDD-WVKYVNLVNIYITASHLVNAESSTLVE 176
N+ I E C +G +D W + NL
Sbjct: 507 NIMI-----------------EGMCKAGKVEDGWELFCNL-------------------- 529
Query: 177 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 236
+ K ++ I Y+ +I + G+K++ D + K ++ S Y ++ + L G
Sbjct: 530 SLKGVSP-NVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGD 588
Query: 237 LKEVGEIIDQWKQSA 251
+ E+I + +
Sbjct: 589 REASAELIKEMRSCG 603
Score = 38.9 bits (89), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 47/250 (18%), Positives = 104/250 (41%), Gaps = 13/250 (5%)
Query: 46 TYTALLHLYAG-AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 104
TY++L+ +W++ A L + + ++ N + ++ ++ ++ G++ + + +E
Sbjct: 295 TYSSLISCLCNYGRWSD-ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 353
Query: 105 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164
+ ++++ PDIFTY+ I+ +D+ K E+ + V Y L+ + A
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYSTLIKGFCKAK 412
Query: 165 HLVNAESSTLVEAEKSITQR----QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 220
+ +E + ++QR +TY LI + + D ++K +
Sbjct: 413 RVEEG-----MELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 467
Query: 221 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 280
Y +L G L + ++ ++ Q +T + DI N ++ G E E
Sbjct: 468 ILTYNILLDGLCKNGKLAK-AMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELF 526
Query: 281 MLLLQKNCAP 290
L K +P
Sbjct: 527 CNLSLKGVSP 536
Score = 37.7 bits (86), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 103/251 (41%), Gaps = 15/251 (5%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERV-----KQSNLSFNALMYNEMMTLYMSVGQVEKVAL 100
T ++LL+ Y +K A L +++ K +F L++ L++ E VAL
Sbjct: 155 TLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHG----LFLHNKASEAVAL 210
Query: 101 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNI 159
V + ++R PD+ TY ++ +ID L +M + G + D V Y +++
Sbjct: 211 VDQMVQR-GCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM--EKGKIEADVVIYNTIIDG 267
Query: 160 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 219
H+ +A + E + + TY LI G ++ + K
Sbjct: 268 LCKYKHMDDA-LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINP 326
Query: 220 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 279
+ ++ +++ G L E ++ D+ + + D DI + L+ F ++A
Sbjct: 327 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHM 385
Query: 280 HMLLLQKNCAP 290
L++ K+C P
Sbjct: 386 FELMISKDCFP 396
Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY ++ A E ELF + +S N + YN M++ + G E+ +++++
Sbjct: 505 TYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM-SCDSGG 146
K +P+ TYN I + + + + + EM SC G
Sbjct: 565 KEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAG 606
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 14 YATRIDLMTKVFGIHSGERYFEGL---PLSAKTSETYTALLHLYAGAKWTEKAEELFERV 70
Y+ + ++K+ + R F + P+ + ++Y ++L GA T +A E+ ++
Sbjct: 375 YSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGE-RDSYMSMLESLCGAGKTIEAIEMLSKI 433
Query: 71 KQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 130
+ + + +MYN + + + Q+ + + E++K+ PDIFTYN+ I+S +
Sbjct: 434 HEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEV 493
Query: 131 DQVKKFLDEMSCDSGGSDDWVKYVNLVN 158
D+ +E+ S D + Y +L+N
Sbjct: 494 DEAINIFEELE-RSDCKPDIISYNSLIN 520
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 2/147 (1%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
Y + K +LFE++K+ S + YN ++ + VG+V++ + EE++
Sbjct: 445 YNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELE 504
Query: 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166
R + PDI +YN I+ ++D+ EM + G + D V Y L+ + +
Sbjct: 505 RSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGLNPDVVTYSTLMECF-GKTER 562
Query: 167 VNAESSTLVEAEKSITQRQWITYDFLI 193
V S E Q +TY+ L+
Sbjct: 563 VEMAYSLFEEMLVKGCQPNIVTYNILL 589
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 11/240 (4%)
Query: 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 103
S TY LL Y ++ KA +++ +++ + YN ++ ++ + EK V E
Sbjct: 203 SFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLD---ALAKDEKACQVFE 259
Query: 104 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163
++K+++ D +TY + I + D+ +EM + G + + V Y L+ + +
Sbjct: 260 DMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITE-GLTLNVVGYNTLMQV-LAK 317
Query: 164 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 223
+V+ ++ + TY L+ L G ++D + + ++K+ MT
Sbjct: 318 GKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGV---VEISKRYMTQGI 374
Query: 224 YICILSSYLMLGHLKEVGEII-DQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFH 280
Y ++ + LGH+ E + D W + D +S L GA + E ++ H
Sbjct: 375 YSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIH 434
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 4 HKEFVLSDSD-YATRIDLMTKVFGIHSGERYFEGLPLSAKTSE--TYTALLHLYAGAKWT 60
H++ V++D+ Y T + K+ I FE + + + TY L+ +
Sbjct: 434 HEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEV 493
Query: 61 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 120
++A +FE +++S+ + + YN ++ G V++ + +E++ K + PD+ TY+
Sbjct: 494 DEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTL 553
Query: 121 ISSCAATLNIDQVKKFLDEM 140
+ T ++ +EM
Sbjct: 554 MECFGKTERVEMAYSLFEEM 573
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 114/250 (45%), Gaps = 23/250 (9%)
Query: 35 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 94
EGL L+ Y L+ + A K +KA ++F R+ ++ N Y+ ++ L ++ GQ
Sbjct: 299 EGLTLNVVG---YNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQ 355
Query: 95 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK-FLDEMSCDSGGSDDWVKY 153
+ ++ VV EI ++ + I++Y + + + ++ + + F D S G D Y
Sbjct: 356 LVRLDGVV-EISKRYMTQGIYSY--LVRTLSKLGHVSEAHRLFCDMWSFPVKGERD--SY 410
Query: 154 VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI-ILYAGLGNKDKIDQIWKSL 212
++++ A + A +E I ++ +T + +++ LG +I I
Sbjct: 411 MSMLESLCGAGKTIEA-----IEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLF 465
Query: 213 RMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQWKQSATSDF--DISACNRLLGAF 267
K+ S + Y +++S+ G + EV E I+ +++ SD DI + N L+
Sbjct: 466 EKMKKDGPSPDIFTYNILIASF---GRVGEVDEAINIFEELERSDCKPDIISYNSLINCL 522
Query: 268 SDVGLTEKAN 277
G ++A+
Sbjct: 523 GKNGDVDEAH 532
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 39/76 (51%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
+Y +L++ ++A F+ +++ L+ + + Y+ +M + +VE + EE+
Sbjct: 514 SYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEM 573
Query: 106 KRKNVVPDIFTYNLWI 121
K P+I TYN+ +
Sbjct: 574 LVKGCQPNIVTYNILL 589
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY+ L+ + + E A LFE + N + YN ++ G+ + + ++
Sbjct: 549 TYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKM 608
Query: 106 KRKNVVPDIFTYNL 119
K++ + PD TY +
Sbjct: 609 KQQGLTPDSITYTV 622
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 15/224 (6%)
Query: 61 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY--- 117
E+AE L +++ + +Y+ MM Y V +K +V + +K P + TY
Sbjct: 431 ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCL 490
Query: 118 -NLW--ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL 174
NL+ + + L + +V K + G + Y ++N ++ NA +
Sbjct: 491 INLYTKVGKISKALEVSRVMK-------EEGVKHNLKTYSMMINGFVKLKDWANA-FAVF 542
Query: 175 VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 234
+ K + I Y+ +I + G+GN D+ Q K ++ + + T+R ++ I+ Y
Sbjct: 543 EDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKS 602
Query: 235 GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE 278
G ++ E+ D ++ + N L+ + EKA E
Sbjct: 603 GDMRRSLEVFDMMRRCGCVP-TVHTFNGLINGLVEKRQMEKAVE 645
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 2/195 (1%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TYT ++ YA T KA E F R++ L + Y ++ G+++ V +E+
Sbjct: 661 TYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEM 720
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
+N+ + F YN+ I A ++ + + +M G D Y + ++ A
Sbjct: 721 SARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK-KEGVKPDIHTYTSFISACSKAGD 779
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225
+ N + T+ E E + TY LI +A +K ++ ++ K Y
Sbjct: 780 M-NRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYH 838
Query: 226 CILSSYLMLGHLKEV 240
C+L+S L + E
Sbjct: 839 CLLTSLLSRASIAEA 853
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%)
Query: 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 102
T T+ L++ + EKA E+ + + + +S N Y ++M Y SVG K
Sbjct: 623 TVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYF 682
Query: 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 141
++ + + DIFTY + +C + + EMS
Sbjct: 683 TRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMS 721
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY L++LY KA E+ +K+ + N Y+ M+ ++ + V E++
Sbjct: 486 TYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM 545
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140
++ + PD+ YN IS+ N+D+ + + EM
Sbjct: 546 VKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEM 580
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/240 (17%), Positives = 101/240 (42%), Gaps = 15/240 (6%)
Query: 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 102
T+ T+ ++H YA + ++ E+F+ +++ +N ++ + Q+EK ++
Sbjct: 588 TTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEIL 647
Query: 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 162
+E+ V + TY + A+ + + ++ + + G D Y L+
Sbjct: 648 DEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQ-NEGLDVDIFTYEALLKACCK 706
Query: 163 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ----- 217
+ + +A + T + ++I + ++ Y+ LI +A G+ +W++ + +Q
Sbjct: 707 SGRMQSALAVTKEMSARNIPRNSFV-YNILIDGWARRGD------VWEAADLIQQMKKEG 759
Query: 218 -KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 276
K Y +S+ G + + I++ + +I L+ ++ L EKA
Sbjct: 760 VKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKP-NIKTYTTLIKGWARASLPEKA 818
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 23 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 82
K F +H E +G+ T TYT+L+++ T +A+ELFE+V + + +M
Sbjct: 415 KAFALHD-EMMTDGI---QPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMM 470
Query: 83 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 142
N +M + ++G +++ +++E+ ++ PD TYN + ++ ++ + EM
Sbjct: 471 NTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMK- 529
Query: 143 DSGGSDDWVKYVNLVNIY 160
G D + Y L++ Y
Sbjct: 530 RRGIKPDHISYNTLISGY 547
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 89/214 (41%), Gaps = 14/214 (6%)
Query: 68 ERVKQSNL----SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 123
E VKQ + ++N L++ L+M ++E +++ EI+ K +V D TYN+ I+
Sbjct: 352 EMVKQGMVPTFYTYNTLIHG----LFME-NKIEAAEILIREIREKGIVLDSVTYNILING 406
Query: 124 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 183
+ + DEM D G Y +L IY+ E+ L E
Sbjct: 407 YCQHGDAKKAFALHDEMMTD-GIQPTQFTYTSL--IYVLCRKNKTREADELFEKVVGKGM 463
Query: 184 RQ-WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGE 242
+ + + L+ + +GN D+ + K + M Y C++ G +E E
Sbjct: 464 KPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARE 523
Query: 243 IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 276
++ + K+ IS N L+ +S G T+ A
Sbjct: 524 LMGEMKRRGIKPDHISY-NTLISGYSKKGDTKHA 556
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY L+ ++ E A + +K + YN +++ + G+ + V+ E+
Sbjct: 262 TYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASE---VLREM 318
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
K +VPD +YN+ I C+ +++ + DEM G + Y L++ +
Sbjct: 319 KEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEM-VKQGMVPTFYTYNTLIHGLFMENK 377
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 204
+ AE EK I +TY+ LI Y G+ K
Sbjct: 378 IEAAEILIREIREKGIVL-DSVTYNILINGYCQHGDAKK 415
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY L+ G E+A EL +K+ + + + YN +++ Y G + +V +E+
Sbjct: 504 TYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEM 563
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD 149
P + TYN + + + ++ L EM + +D
Sbjct: 564 LSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPND 607
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 10/238 (4%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
YT L+ ++ ++ LF+++++ ++ ++ + G+V+ +++E+
Sbjct: 170 AYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEM 229
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
K ++ DI YN+ I S +D KF E+ + G D V Y +++ + A+
Sbjct: 230 KSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANR 288
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN-- 223
L A EK+ +R TY + ++ G G+ K D+ + L + K + +
Sbjct: 289 LDEA-VEMFEHLEKN--RRVPCTYAYNTMI-MGYGSAGKFDEAYSLLERQRAKGSIPSVI 344
Query: 224 -YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 280
Y CIL+ +G + E ++ ++ K+ A ++S N L+ G + A E
Sbjct: 345 AYNCILTCLRKMGKVDEALKVFEEMKKDAAP--NLSTYNILIDMLCRAGKLDTAFELR 400
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 120/282 (42%), Gaps = 12/282 (4%)
Query: 14 YATRIDLMTKVFGIHSGERYFEGLPLSA-KTSE-TYTALLHLYAGAKWTEKAEELFERVK 71
Y ID KV + ++F + + K E TYT+++ + A ++A E+FE ++
Sbjct: 241 YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLE 300
Query: 72 QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 131
++ YN M+ Y S G+ ++ ++E + K +P + YN ++ +D
Sbjct: 301 KNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVD 360
Query: 132 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ-WITYD 190
+ K +EM D+ + + Y L+++ A L T E S+ + +
Sbjct: 361 EALKVFEEMKKDA--APNLSTYNILIDMLCRAGKL-----DTAFELRDSMQKAGLFPNVR 413
Query: 191 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 250
+ I+ L K+D+ K+ + + I S LG + V + +++
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM 473
Query: 251 ATSDFDISAC--NRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290
SD ++ L+ F + G E ++ + ++ +NC+P
Sbjct: 474 LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSP 515
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 119/320 (37%), Gaps = 53/320 (16%)
Query: 16 TRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEELFERVKQS 73
T +D M K G FE + + +Y+ L+H A + + ELF +K+
Sbjct: 522 TYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQ 581
Query: 74 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV 133
+ YN ++ + G+V K ++EE+K K P + TY I A +D+
Sbjct: 582 GCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEA 641
Query: 134 KKFLDEMSCD---------SGGSDDWVKYVNLVNIYITASHLV-----------NAESST 173
+E S D + K + Y+ L+ N+
Sbjct: 642 YMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDA 701
Query: 174 LVEAEK--------------SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 219
LV+AE+ T Q +TY LI + +K W+ ++ K
Sbjct: 702 LVKAEEINEALVCFQSMKELKCTPNQ-VTYGILINGLCKVRKFNKAFVFWQEMQKQGMKP 760
Query: 220 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC-----------NRLLGAFS 268
++ +Y ++S G++ E G + D++K A SAC NR + AFS
Sbjct: 761 STISYTTMISGLAKAGNIAEAGALFDRFK--ANGGVPDSACYNAMIEGLSNGNRAMDAFS 818
Query: 269 DVGLTEKANEFHMLLLQKNC 288
L E+ + + K C
Sbjct: 819 ---LFEETRRRGLPIHNKTC 835
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 10/243 (4%)
Query: 14 YATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEELFERVK 71
+ + ID + KV + + +E + S S YT+L+ + E ++++ +
Sbjct: 450 FCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMI 509
Query: 72 QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 131
N S + + N M G+ EK + EEIK + VPD +Y++ I +
Sbjct: 510 NQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFAN 569
Query: 132 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 191
+ + M + G D Y N+V VN L E + + +TY
Sbjct: 570 ETYELFYSMK-EQGCVLDTRAY-NIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGS 627
Query: 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQWK 248
+I GL D++D+ + K K N Y ++ + +G + E I+++
Sbjct: 628 VI---DGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELM 684
Query: 249 QSA 251
Q
Sbjct: 685 QKG 687
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 103
++TYT L++ + AEE+F ++ ++ + Y ++ + +G ++K + + +
Sbjct: 592 AKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651
Query: 104 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163
E+ + + P++ YN+ + + I++ K+ LDEMS G + V Y +++ Y +
Sbjct: 652 EMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV-KGLHPNAVTYCTIIDGYCKS 710
Query: 164 SHLVNA 169
L A
Sbjct: 711 GDLAEA 716
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/268 (19%), Positives = 106/268 (39%), Gaps = 36/268 (13%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY ++ + + A + + + S N ++Y ++ ++ + V++E+
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEM 478
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
K + + PDIF YN I + +D+ + FL EM ++G + Y ++ YI AS
Sbjct: 479 KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM-VENGLKPNAFTYGAFISGYIEASE 537
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFL-------------------------------II 194
+A+ E + + + + +
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV 597
Query: 195 LYAGLGNKDKID---QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251
L GL DK+D +I++ +R +Y +++ + LG++++ I D+ +
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 252 TSDFDISACNRLLGAFSDVGLTEKANEF 279
+ ++ N LLG F G EKA E
Sbjct: 658 LTP-NVIIYNMLLGGFCRSGEIEKAKEL 684
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 114/289 (39%), Gaps = 42/289 (14%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
Y LL + + EKA+EL + + L NA+ Y ++ Y G + + + +E+K
Sbjct: 665 YNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK 724
Query: 107 RKNVVPDIFTYNLWISSCA-----------------------ATLN--IDQVKKF----- 136
K +VPD F Y + C A N I+ V KF
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTEL 784
Query: 137 -------LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY 189
L + S D G + V Y N++ Y+ + A + + + ITY
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTY-NIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITY 843
Query: 190 DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ-WK 248
L+ Y +G + ++ ++ + Y I++++L G + ++DQ +
Sbjct: 844 TSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFA 903
Query: 249 QSATSD---FDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 294
++A D IS C LL F+ VG E A + +++ P +A+
Sbjct: 904 KNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 109/268 (40%), Gaps = 39/268 (14%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
+Y L++ ++ +KA +F+ + + L+ N ++YN ++ + G++EK +++E+
Sbjct: 629 SYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN------- 158
K + P+ TY I + ++ + + DEM D +V Y LV+
Sbjct: 689 SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFV-YTTLVDGCCRLND 747
Query: 159 ----IYITASHLVNAESSTL--------------VEAEKSITQRQW------------IT 188
I I ++ SST E + + R +T
Sbjct: 748 VERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807
Query: 189 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 248
Y+ +I GN + +++ ++ T Y +L+ Y +G E+ + D+
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDE-A 866
Query: 249 QSATSDFDISACNRLLGAFSDVGLTEKA 276
+A + D + ++ AF G+T KA
Sbjct: 867 IAAGIEPDHIMYSVIINAFLKEGMTTKA 894
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 5/147 (3%)
Query: 61 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 120
EKA+ LF+ + S L A Y ++ Y V + ++ E+K++N+V +TY
Sbjct: 364 EKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTV 423
Query: 121 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 180
+ ++ ++D + EM SG + V Y L+ ++ S +A L E ++
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIA-SGCRPNVVIYTTLIKTFLQNSRFGDA-MRVLKEMKEQ 481
Query: 181 ITQRQWITYDFLIILYAGLGNKDKIDQ 207
Y+ LII GL ++D+
Sbjct: 482 GIAPDIFCYNSLII---GLSKAKRMDE 505
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/203 (18%), Positives = 81/203 (39%), Gaps = 2/203 (0%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY A + Y A A++ + +++ + N ++ ++ Y G+V + +
Sbjct: 524 TYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSM 583
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
+ ++ D TY + ++ +D ++ EM G + D Y L+N + +
Sbjct: 584 VDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMR-GKGIAPDVFSYGVLINGFSKLGN 642
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225
+ A S E+ +T I Y+ L+ + G +K ++ + + + Y
Sbjct: 643 MQKASSIFDEMVEEGLTP-NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYC 701
Query: 226 CILSSYLMLGHLKEVGEIIDQWK 248
I+ Y G L E + D+ K
Sbjct: 702 TIIDGYCKSGDLAEAFRLFDEMK 724
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAE--E 65
+D Y ID + K + + + F + + T TYT+LL+ Y K +AE
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYD--KMGRRAEMFP 861
Query: 66 LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 125
+F+ + + + +MY+ ++ ++ G K ++V+++ KN V D L IS+C
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDD--GCKLSISTCR 919
Query: 126 ATLN 129
A L+
Sbjct: 920 ALLS 923
>sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825,
chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2
SV=2
Length = 904
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 34 FEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 93
F+G +S E Y LL Y K EK + +R+K+S + YN M+ +Y G
Sbjct: 761 FDGFSVSL---EAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQG 817
Query: 94 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY 153
+++VA V++E+K + PD+ +YN I + +++ + EM + D V Y
Sbjct: 818 WIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDK-VTY 876
Query: 154 VNLV 157
NLV
Sbjct: 877 TNLV 880
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/244 (18%), Positives = 100/244 (40%), Gaps = 4/244 (1%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
+ +L +Y +K + L+ R+++S + +N MYN ++ +++++ EE+
Sbjct: 632 FRDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMI 691
Query: 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166
R P+ T+N+ + +V + + G D + Y ++ Y
Sbjct: 692 RYGFTPNTVTFNVLLDVYGKAKLFKKVNELF--LLAKRHGVVDVISYNTIIAAYGKNKDY 749
Query: 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 226
N SS + + Y+ L+ Y +K I K ++ + Y
Sbjct: 750 TNM-SSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNI 808
Query: 227 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286
+++ Y G + EV +++ + K+S D+ + N L+ A+ G+ E+A + +
Sbjct: 809 MINIYGEQGWIDEVADVLKELKESGLGP-DLCSYNTLIKAYGIGGMVEEAVGLVKEMRGR 867
Query: 287 NCAP 290
N P
Sbjct: 868 NIIP 871
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSN----LSFNALM-------------------- 81
T+ LL +Y AK +K ELF K+ +S+N ++
Sbjct: 701 TFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQ 760
Query: 82 ----------YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 131
YN ++ Y Q+EK +++ +K+ PD +TYN+ I+ ID
Sbjct: 761 FDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWID 820
Query: 132 QVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160
+V L E+ +SG D Y L+ Y
Sbjct: 821 EVADVLKELK-ESGLGPDLCSYNTLIKAY 848
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/112 (18%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
Y++++ +Y + +KAEE+ + +KQ + + M+ Y G++E ++ +
Sbjct: 281 AYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSM 340
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 157
+ P+I YN I+ ++ + + C+ G D Y +++
Sbjct: 341 EAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRL-CNIGLEPDETSYRSMI 391
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 42/96 (43%)
Query: 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 104
E + +L+ Y+ E AE + ++ + S N + YN ++T Y + ++E +
Sbjct: 315 ENWLVMLNAYSQQGKMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHR 374
Query: 105 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140
+ + PD +Y I N ++ K + E+
Sbjct: 375 LCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQEL 410
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 2/193 (1%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TYT L+ G T++A +L + + + NA+ YN ++ G V +VE +
Sbjct: 319 TYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELM 378
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITAS 164
K++ PD TYN+ + A ++D+ K L M DS +D D + Y L++ +
Sbjct: 379 KKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKEN 438
Query: 165 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 224
L A + EK + +T + L+ G+ +K ++WK + +K S Y
Sbjct: 439 RLHQALDIYDLLVEK-LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTY 497
Query: 225 ICILSSYLMLGHL 237
++ + G L
Sbjct: 498 TAMIDGFCKTGML 510
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 101
+ S+TYTA++ + A+ L +++ S L + YN +++ G +++ +
Sbjct: 492 RNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRL 551
Query: 102 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 161
EE++R N PD+ ++N+ I +I + L MS +G S D Y L+N ++
Sbjct: 552 FEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMS-RAGLSPDLFTYSKLINRFL 610
Query: 162 TASHLVNAES 171
+L A S
Sbjct: 611 KLGYLDEAIS 620
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
+Y ++ + K EKA EL +K S S++ + + ++ + G++++ ++E+
Sbjct: 179 SYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM 238
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
K + D+ Y I +D+ K DE+ + G S + Y L+ +
Sbjct: 239 KFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV-LERGDSPCAITYNTLIRGFCKLGQ 297
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225
L A E+ + + TY LI G+G + Q+ + ++ + Y
Sbjct: 298 LKEASEIFEFMIERGVRPNVY-TYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYN 356
Query: 226 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285
I++ G + + EI++ K+ T +I+ N LLG G ++A++ L+L+
Sbjct: 357 IIINKLCKDGLVADAVEIVELMKKRRTRPDNITY-NILLGGLCAKGDLDEASKLLYLMLK 415
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Query: 39 LSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 98
L A T LL+ A KA EL++++ S + N+ Y M+ + G +
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513
Query: 99 ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 158
++ +++ + P +F YN +SS ++DQ + +EM D+ D V + +++
Sbjct: 514 KGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFP-DVVSFNIMID 572
Query: 159 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 204
+ A + +AE S LV ++ TY LI + LG D+
Sbjct: 573 GSLKAGDIKSAE-SLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDE 617
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/233 (19%), Positives = 94/233 (40%), Gaps = 7/233 (3%)
Query: 62 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 121
KA L +++++L + YN ++ + ++EK + E+K + T+ + I
Sbjct: 160 KAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILI 219
Query: 122 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES--STLVEAEK 179
+ +D+ FL EM G D V Y +L+ + L ++ ++E
Sbjct: 220 DAFCKAGKMDEAMGFLKEMKF-MGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGD 278
Query: 180 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 239
S ITY+ LI + LG + +I++ + + Y ++ +G KE
Sbjct: 279 SPCA---ITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKE 335
Query: 240 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 292
++++ + ++ N ++ GL A E L+ ++ P N
Sbjct: 336 ALQLLNLMIEKDEEPNAVTY-NIIINKLCKDGLVADAVEIVELMKKRRTRPDN 387
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 112/286 (39%), Gaps = 55/286 (19%)
Query: 14 YATRIDLMTKVFGIHSGERYFEGLPLSAKTSE--TYTALLHLYAGAKWTEKAEELFERVK 71
Y +D K I ++F + T TYTAL+H Y AK A ELFE +
Sbjct: 521 YTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETML 580
Query: 72 QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD----------------IF 115
N + Y+ ++ + GQVEK + E + VPD +
Sbjct: 581 SEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVV 640
Query: 116 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES---- 171
TY + + +++ +K LD MS + G + + Y L++ L A+
Sbjct: 641 TYGALLDGFCKSHRVEEARKLLDAMSME-GCEPNQIVYDALIDGLCKVGKLDEAQEVKTE 699
Query: 172 -------------STLVEAEKSITQRQWITYDFL-----------IILYA----GLGNKD 203
S+L++ + +RQ + L +++Y GL
Sbjct: 700 MSEHGFPATLYTYSSLIDRYFKV-KRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 758
Query: 204 KIDQIWKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQ 246
K D+ +K ++M ++K N Y ++ + M+G ++ E++++
Sbjct: 759 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLER 804
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 82 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS-CAATLNIDQVKKFLDEM 140
Y++++ + ++E L+ EE+KR +V D++TY + + S C A L I+Q +K+ +EM
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGL-IEQARKWFNEM 544
Query: 141 SCDSGGSDDWVKYVNLVNIYITASHLVNA-ESSTLVEAEKSITQRQWITYDFLIILYAGL 199
+ G + + V Y L++ Y+ A + A E + +E + +TY LI +
Sbjct: 545 R-EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLP--NIVTYSALIDGHCKA 601
Query: 200 GNKDKIDQIWKSLRMTKQK 218
G +K QI++ RM K
Sbjct: 602 GQVEKACQIFE--RMCGSK 618
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
YT ++ T++A +L + +++ N + Y M+ + +G++E ++E +
Sbjct: 747 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG 806
Query: 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140
K V P+ TY + I C +D L+EM
Sbjct: 807 SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEM 840
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 12/172 (6%)
Query: 46 TYTALLH-LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 104
TYTAL++ L ++W++ A L + +K+ ++ N + Y+ ++ ++ G+V + + EE
Sbjct: 227 TYTALVNGLCNSSRWSDAARLLSDMIKK-KITPNVITYSALLDAFVKNGKVLEAKELFEE 285
Query: 105 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164
+ R ++ PDI TY+ I+ ID+ + D M G D V Y L+N + A
Sbjct: 286 MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV-SKGCLADVVSYNTLINGFCKAK 344
Query: 165 HLVNAESSTLVEAEKSITQR----QWITYDFLIILYAGLGNKDKIDQIWKSL 212
+ + ++ + ++QR +TY+ LI + G+ DK + + +
Sbjct: 345 RVEDG-----MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
+Y L++ + AK E +LF + Q L N + YN ++ + G V+K ++
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Query: 106 KRKNVVPDIFTYNLWISS 123
+ PDI+TYN+ +
Sbjct: 392 DFFGISPDIWTYNILLGG 409
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 15/236 (6%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
Y A++ K A + F+ +++ + N + Y ++ + + A ++ ++
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252
Query: 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE---MSCDSGGSDDWVKYVNLVNIYITA 163
+K + P++ TY+ + + + + K+ +E MS D D V Y +L+N
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP----DIVTYSSLINGLCLH 308
Query: 164 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 223
+ A + K ++Y+ LI G +++ K R Q+ N
Sbjct: 309 DRIDEANQMFDLMVSKGCLA-DVVSYNTLI---NGFCKAKRVEDGMKLFREMSQRGLVSN 364
Query: 224 ---YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 276
Y ++ + G + + E Q S DI N LLG D G EKA
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISP-DIWTYNILLGGLCDNGELEKA 419
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY LL EKA +FE +++ + + + Y ++ G+VE+ + +
Sbjct: 402 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 461
Query: 106 KRKNVVPDIFTYNLWISS 123
K + PDI TY +S
Sbjct: 462 SLKGLKPDIVTYTTMMSG 479
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 121/279 (43%), Gaps = 5/279 (1%)
Query: 14 YATRIDLMTKVFGIHSG-ERYFEGLPLSAKTSE-TYTALLHLYAGAKWTEKAEELFERVK 71
Y T ID K I + +FE L +E TYT L++ ++ E++E+++
Sbjct: 201 YTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQ 260
Query: 72 QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 131
+ + N YN +M G+ + V +E++ + V +I TYN I + ++
Sbjct: 261 EDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLN 320
Query: 132 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 191
+ K +D+M D G + + + Y L++ + L A S + ++ +TY+
Sbjct: 321 EANKVVDQMKSD-GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSP-SLVTYNI 378
Query: 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251
L+ + G+ ++ K + K + Y ++ ++ ++++ ++ ++
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438
Query: 252 TSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290
D+ + L+ F G +A+ +++KNC P
Sbjct: 439 LVP-DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEP 476
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TY+ L+H + +A LF+ + + N N ++YN M+ Y G + +++E+
Sbjct: 445 TYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEM 504
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSG 145
+ K + P++ +Y I + ++ +++M DSG
Sbjct: 505 EEKELAPNVASYRYMIEVLCKERKSKEAERLVEKM-IDSG 543
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 6 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSE--------TYTALLHLYAGA 57
E ++S + + T + G +R EG+ L + S+ TYT L+H + A
Sbjct: 389 ELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQA 448
Query: 58 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY 117
+ + A+ +F+++ + N + YN ++ G++EK +V E ++R + P I+TY
Sbjct: 449 RDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 508
Query: 118 NLWISS-CAA 126
N+ I C A
Sbjct: 509 NIMIEGMCKA 518
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 46 TYTALLHLYAG-AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 104
TY++L+ +W++ A L + + ++ N + +N ++ ++ G++ + + +E
Sbjct: 297 TYSSLISCLCNYERWSD-ASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDE 355
Query: 105 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164
+ ++++ PDIFTY+ I+ +D+ K E+ + V Y L+N + A
Sbjct: 356 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLINGFCKAK 414
Query: 165 HLVNAESSTLVEAEKSITQR----QWITYDFLIILYAGLGNKDKIDQIWKSL 212
+ VE + ++QR +TY LI + + D ++K +
Sbjct: 415 RIDEG-----VELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 461
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 19/253 (7%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERV-----KQSNLSFNALMYNEMMTLYMSVGQVEKVAL 100
T ++LL+ Y K A L +++ + ++F L++ L++ E VAL
Sbjct: 157 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG----LFLHNKASEAVAL 212
Query: 101 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160
V ++R P++ TY + ++ +ID L++M + + V Y +++
Sbjct: 213 VDRMVQR-GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEANVVIYSTVIDSL 270
Query: 161 ITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 220
H +A + E E + ITY LI + L N ++ + L ++
Sbjct: 271 CKYRHEDDA-LNLFTEMENKGVRPNVITYSSLI---SCLCNYERWSDASRLLSDMIERKI 326
Query: 221 SRNYI---CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 277
+ N + ++ +++ G L E ++ D+ + + D DI + L+ F ++A
Sbjct: 327 NPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAK 385
Query: 278 EFHMLLLQKNCAP 290
L++ K+C P
Sbjct: 386 HMFELMISKDCFP 398
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 100/214 (46%), Gaps = 3/214 (1%)
Query: 1 MVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEG-LPLSAKTS-ETYTALLHLYAGAK 58
+++ ++F + Y ID ++K ++ ++ FEG L + + Y L++ + A
Sbjct: 881 LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAG 940
Query: 59 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN 118
+ A LF+R+ + + + Y+ ++ VG+V++ +E+K + PD+ YN
Sbjct: 941 EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYN 1000
Query: 119 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE 178
L I+ + +++ +EM G + D Y +L+ + + + +V E +
Sbjct: 1001 LIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI-LNLGIAGMVEEAGKIYNEIQ 1059
Query: 179 KSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL 212
++ + T++ LI Y+ G + +++++
Sbjct: 1060 RAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTM 1093
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 5/184 (2%)
Query: 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 101
T+ TY + Y + + A E FE++K ++ N + N + G+ + +
Sbjct: 431 PTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQI 490
Query: 102 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 161
+K +VPD TYN+ + + ID+ K L EM ++G D + +L+N
Sbjct: 491 FYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM-ENGCEPDVIVVNSLINTLY 549
Query: 162 TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 221
A + A + E + + +TY+ L+ AGLG KI + + QK
Sbjct: 550 KADRVDEAWKMFMRMKEMKL-KPTVVTYNTLL---AGLGKNGKIQEAIELFEGMVQKGCP 605
Query: 222 RNYI 225
N I
Sbjct: 606 PNTI 609
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 86/209 (41%), Gaps = 8/209 (3%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
+Y L+HL +++ +A E++ R+ + Y+ +M ++ V +++E+
Sbjct: 190 SYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM 249
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
+ + P+++T+ + I I++ + L M D G D V Y L++ TA
Sbjct: 250 ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMD-DEGCGPDVVTYTVLIDALCTARK 308
Query: 166 LVNAESSTLVEAEKSITQRQ---WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR 222
L A+ EK T R +TY L+ ++ + D + Q W +
Sbjct: 309 LDCAKEVF----EKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVV 364
Query: 223 NYICILSSYLMLGHLKEVGEIIDQWKQSA 251
+ ++ + G+ E + +D +
Sbjct: 365 TFTILVDALCKAGNFGEAFDTLDVMRDQG 393
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)
Query: 31 ERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 90
E++ + L + K TY L+ A E A+++F +VK + + YN ++ Y
Sbjct: 773 EKFTKDLGVQPKLP-TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYG 831
Query: 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW 150
G+++++ + +E+ + T+N+ IS N+D ++ D S
Sbjct: 832 KSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 891
Query: 151 VKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIW 209
Y L++ + L E+ L E R Y+ LI + G D ++
Sbjct: 892 CTYGPLIDGLSKSGRLY--EAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALF 949
Query: 210 KSLRMTKQKMTS--RNYICILSSYLMLGHLKEVGEIIDQWKQSA 251
K RM K+ + + Y ++ M+G + E + K+S
Sbjct: 950 K--RMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 95/247 (38%), Gaps = 7/247 (2%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
TYT L+ A+ + A+E+FE++K + + Y ++ + ++ V E+
Sbjct: 295 TYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEM 354
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
++ VPD+ T+ + + + N + LD M D G + Y L+ + H
Sbjct: 355 EKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMR-DQGILPNLHTYNTLI-CGLLRVH 412
Query: 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225
++ E + TY I Y G D + + +M + +
Sbjct: 413 RLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSG--DSVSALETFEKMKTKGIAPNIVA 470
Query: 226 CILSSYLM--LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 283
C S Y + G +E +I K D N ++ +S VG ++A + +
Sbjct: 471 CNASLYSLAKAGRDREAKQIFYGLKDIGLVP-DSVTYNMMMKCYSKVGEIDEAIKLLSEM 529
Query: 284 LQKNCAP 290
++ C P
Sbjct: 530 MENGCEP 536
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 101
T TY LL ++A ELFE + Q N + +N TL+ + + ++V L
Sbjct: 571 PTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFN---TLFDCLCKNDEVTLA 627
Query: 102 VE---EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140
++ ++ VPD+FTYN I + + F +M
Sbjct: 628 LKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM 669
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 15/236 (6%)
Query: 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106
Y ++ +K + A +L R+++ + + + YN +++ S G+ +V +
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMT 248
Query: 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM---SCDSGGSDDWVKYVNLVNIYITA 163
++ + PD+FT+N I +C + + ++F +EM S D D V Y L+
Sbjct: 249 KREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDP----DIVTYSLLIYGLCMY 304
Query: 164 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 223
S L AE K +TY LI G K++ K Q+ RN
Sbjct: 305 SRLDEAEEMFGFMVSKGCFP-DVVTYSILI---NGYCKSKKVEHGMKLFCEMSQRGVVRN 360
Query: 224 ---YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 276
Y ++ Y G L EI + +I N LL D G EKA
Sbjct: 361 TVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHP-NIITYNVLLHGLCDNGKIEKA 415
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%)
Query: 41 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 100
+ + TYT L+ Y A AEE+F R+ + N + YN ++ G++EK +
Sbjct: 358 VRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALV 417
Query: 101 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160
++ ++++ + DI TYN+ I + ++C D W ++ +Y
Sbjct: 418 ILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLY 477
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Query: 16 TRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNL 75
+R+D ++FG + F + TY+ L++ Y +K E +LF + Q +
Sbjct: 305 SRLDEAEEMFGFMVSKGCFPDV-------VTYSILINGYCKSKKVEHGMKLFCEMSQRGV 357
Query: 76 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV----PDIFTYNLWISSCAATLNID 131
N + Y ++ Y G++ V EEI R+ V P+I TYN+ + I+
Sbjct: 358 VRNTVTYTILIQGYCRAGKLN----VAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413
Query: 132 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169
+ L +M +G D V Y ++ A + +A
Sbjct: 414 KALVILADMQ-KNGMDADIVTYNIIIRGMCKAGEVADA 450
>sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650,
chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2
SV=1
Length = 778
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 99/277 (35%), Gaps = 54/277 (19%)
Query: 5 KEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLY---AGAKWTE 61
K+ + + D + L+ KVF A S YT L+ Y T
Sbjct: 390 KKLLPNSVDPSGEPPLLPKVF---------------APDSRIYTTLMKGYMKNGRVADTA 434
Query: 62 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 121
+ E R N + + Y +++ +++ G +++ V+ E+ R V + TYN+ +
Sbjct: 435 RMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLL 494
Query: 122 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 181
L ID+ + L EM+ D+G D V Y NI I L++ + L
Sbjct: 495 KGYCKQLQIDRAEDLLREMTEDAGIEPDVVSY----NIIIDGCILIDDSAGALA------ 544
Query: 182 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG 241
+ +R T +Y ++ ++ M G K
Sbjct: 545 --------------------------FFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLAN 578
Query: 242 EIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE 278
+ D+ D+ A N L+ + +GL E A
Sbjct: 579 RVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIEDAQR 615
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 40 SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 99
S + + A+L+ A T+K +LFE + + + + L YN M+ L VG+ E +
Sbjct: 232 SRPDTAAFNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIV 291
Query: 100 LVVEEIKRKNV 110
V+E I K +
Sbjct: 292 FVLERIIDKGI 302
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 41 AKTSETYTALLHLYAGAKWTEKAEELF-ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 99
A T +YT L+ +A + + A +F E + + + + +N ++ Y +G +E
Sbjct: 555 APTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIEDAQ 614
Query: 100 LVVEEIKRKNVVPDIFTY 117
VV +K P++ TY
Sbjct: 615 RVVSRMKENGFYPNVATY 632
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 14 YATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW--TEKAEELFERVK 71
Y T ID + +YF L S T+ + + A +++ AE +F +K
Sbjct: 411 YTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMK 470
Query: 72 QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 131
L + + YN +M Y Q+ KV +++E++ + PD+ TYN+ I S ID
Sbjct: 471 TEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYID 530
Query: 132 QVKKFLDEM 140
+ + + E+
Sbjct: 531 EANEIISEL 539
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
T +ALLH Y A+ EKA LF ++ + L + ++YN ++ Y SVG +EK ++ +
Sbjct: 585 TCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLM 644
Query: 106 KRKNVVPDIFTYN 118
++ ++P+ T++
Sbjct: 645 VQRGMLPNESTHH 657
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 38/230 (16%)
Query: 62 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 121
K EE + + L N +Y+ ++ S G + + + + +EI ++PD Y I
Sbjct: 356 KPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMI 415
Query: 122 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 181
C+ G +D +Y + KS
Sbjct: 416 DG-----------------YCNLGRTDKAFQYFGAL--------------------LKSG 438
Query: 182 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG 241
T LI + G+ + ++++++ K+ Y ++ Y L +V
Sbjct: 439 NPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVF 498
Query: 242 EIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 291
E+ID+ + + S D++ N L+ + G ++ANE L+++ P+
Sbjct: 499 ELIDEMRSAGISP-DVATYNILIHSMVVRGYIDEANEIISELIRRGFVPS 547
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 35 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 94
EGL L T Y L+H Y K EL + ++ + +S + YN ++ + G
Sbjct: 472 EGLKLDVVT---YNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGY 528
Query: 95 VEKVALVVEEIKRKNVVPDIFTY 117
+++ ++ E+ R+ VP +
Sbjct: 529 IDEANEIISELIRRGFVPSTLAF 551
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 5/232 (2%)
Query: 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105
T+ +LL + + E A LF+ + + + YN ++ GQ++ ++ ++
Sbjct: 341 TFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400
Query: 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165
K ++P++ +Y+ I A D+ EM G + D V Y L++IY
Sbjct: 401 PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY-LGIALDRVSYNTLLSIYTKVGR 459
Query: 166 LVNAESSTLVEAEKSI-TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 224
+ E+ ++ S+ ++ +TY+ L+ Y G D++ +++ ++ Y
Sbjct: 460 --SEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTY 517
Query: 225 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 276
++ Y G KE EI ++K SA D+ + L+ A GL A
Sbjct: 518 STLIDGYSKGGLYKEAMEIFREFK-SAGLRADVVLYSALIDALCKNGLVGSA 568
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 9/190 (4%)
Query: 15 ATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSN 74
A R D +FG E + G+ L +Y LL +Y +E+A ++ +
Sbjct: 422 AGRFDEALNLFG----EMRYLGIALD---RVSYNTLLSIYTKVGRSEEALDILREMASVG 474
Query: 75 LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK 134
+ + + YN ++ Y G+ ++V V E+KR++V+P++ TY+ I + +
Sbjct: 475 IKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAM 534
Query: 135 KFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLII 194
+ E +G D V Y L++ + + LV + S + E K +TY+ +I
Sbjct: 535 EIFREFK-SAGLRADVVLYSALIDA-LCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIID 592
Query: 195 LYAGLGNKDK 204
+ D+
Sbjct: 593 AFGRSATMDR 602
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,600,341
Number of Sequences: 539616
Number of extensions: 3841716
Number of successful extensions: 12213
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 10092
Number of HSP's gapped (non-prelim): 1704
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)