Query 022531
Match_columns 295
No_of_seqs 424 out of 1159
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 04:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 8.2E-55 1.8E-59 387.4 34.0 290 3-295 464-757 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.3E-53 2.7E-58 379.8 34.3 289 4-295 500-792 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 9.9E-50 2.2E-54 350.9 26.4 279 4-295 151-465 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 8.1E-48 1.8E-52 346.0 30.6 284 4-295 215-592 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.8E-47 6E-52 335.4 30.3 269 4-284 252-521 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.4E-46 3E-51 338.1 28.1 278 5-295 115-392 (857)
7 PRK11788 tetratricopeptide rep 99.9 1.2E-23 2.6E-28 174.6 31.6 275 10-293 68-354 (389)
8 PRK11788 tetratricopeptide rep 99.9 3.1E-22 6.8E-27 166.1 29.4 267 19-293 43-316 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.3E-20 5E-25 170.5 33.3 268 8-286 598-866 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 5.9E-20 1.3E-24 167.8 34.4 270 8-286 462-732 (899)
11 PRK15174 Vi polysaccharide exp 99.9 1.3E-17 2.9E-22 145.7 33.8 265 11-285 110-380 (656)
12 PRK15174 Vi polysaccharide exp 99.8 2.5E-17 5.4E-22 144.0 32.5 267 11-286 76-347 (656)
13 PF13429 TPR_15: Tetratricopep 99.8 4.5E-19 9.8E-24 140.2 13.2 268 8-285 6-276 (280)
14 TIGR00990 3a0801s09 mitochondr 99.8 6.4E-16 1.4E-20 135.2 33.9 185 95-286 310-496 (615)
15 TIGR00990 3a0801s09 mitochondr 99.8 5.9E-16 1.3E-20 135.5 31.1 255 24-286 307-571 (615)
16 KOG4626 O-linked N-acetylgluco 99.8 9.5E-17 2.1E-21 131.4 21.6 267 13-292 220-489 (966)
17 KOG4422 Uncharacterized conser 99.8 2E-15 4.3E-20 118.7 27.6 277 7-287 203-591 (625)
18 KOG4626 O-linked N-acetylgluco 99.8 2.9E-16 6.2E-21 128.6 20.6 269 10-291 115-420 (966)
19 PRK11447 cellulose synthase su 99.7 1E-14 2.2E-19 135.9 32.2 269 13-291 463-746 (1157)
20 PRK10747 putative protoheme IX 99.7 3.9E-14 8.5E-19 117.2 31.5 260 14-285 121-389 (398)
21 PRK11447 cellulose synthase su 99.7 3.9E-14 8.5E-19 132.0 32.7 261 18-286 358-700 (1157)
22 PRK09782 bacteriophage N4 rece 99.7 5.5E-14 1.2E-18 126.5 31.9 264 10-285 476-739 (987)
23 KOG1126 DNA-binding cell divis 99.7 3.2E-15 7E-20 123.2 20.5 257 26-291 334-625 (638)
24 KOG4422 Uncharacterized conser 99.7 2.5E-14 5.4E-19 112.6 24.1 240 42-288 205-464 (625)
25 PRK10049 pgaA outer membrane p 99.7 5.7E-13 1.2E-17 119.2 33.8 274 11-292 83-426 (765)
26 TIGR00540 hemY_coli hemY prote 99.7 4.5E-13 9.7E-18 111.5 30.7 272 8-285 114-398 (409)
27 PRK09782 bacteriophage N4 rece 99.7 1.5E-12 3.2E-17 117.5 34.6 235 43-292 476-710 (987)
28 PRK10049 pgaA outer membrane p 99.7 1.8E-12 3.9E-17 116.0 33.7 274 7-286 11-339 (765)
29 PF13429 TPR_15: Tetratricopep 99.7 2.5E-15 5.5E-20 118.9 13.7 233 9-249 41-276 (280)
30 PRK12370 invasion protein regu 99.7 3.5E-13 7.6E-18 116.2 27.3 266 10-287 255-536 (553)
31 COG3071 HemY Uncharacterized e 99.6 4E-12 8.6E-17 99.4 29.7 269 13-293 120-397 (400)
32 KOG1155 Anaphase-promoting com 99.6 5.2E-13 1.1E-17 106.1 25.1 266 6-282 257-532 (559)
33 TIGR00540 hemY_coli hemY prote 99.6 4.8E-13 1E-17 111.3 26.6 272 15-293 86-371 (409)
34 PRK10747 putative protoheme IX 99.6 7.3E-13 1.6E-17 109.7 27.2 257 24-293 97-362 (398)
35 TIGR02521 type_IV_pilW type IV 99.6 8.2E-13 1.8E-17 101.6 24.5 202 43-249 30-231 (234)
36 TIGR02521 type_IV_pilW type IV 99.6 1.3E-12 2.8E-17 100.4 25.5 203 76-285 28-231 (234)
37 COG2956 Predicted N-acetylgluc 99.6 2.8E-12 6E-17 97.7 25.9 223 24-249 48-277 (389)
38 PRK14574 hmsH outer membrane p 99.6 1.5E-11 3.3E-16 109.0 32.9 261 18-285 109-478 (822)
39 PRK14574 hmsH outer membrane p 99.6 1.1E-11 2.5E-16 109.7 32.0 265 16-285 73-395 (822)
40 COG2956 Predicted N-acetylgluc 99.6 1.4E-11 3E-16 93.9 26.2 267 13-288 71-349 (389)
41 PF13041 PPR_2: PPR repeat fam 99.6 7E-15 1.5E-19 83.5 6.5 49 77-125 1-49 (50)
42 KOG4318 Bicoid mRNA stability 99.6 2.2E-13 4.8E-18 115.9 17.0 256 3-295 17-274 (1088)
43 PF13041 PPR_2: PPR repeat fam 99.6 1.3E-14 2.9E-19 82.4 6.3 50 42-91 1-50 (50)
44 PRK12370 invasion protein regu 99.6 9.9E-12 2.1E-16 107.4 26.1 232 43-285 255-501 (553)
45 KOG1126 DNA-binding cell divis 99.5 1.3E-12 2.9E-17 108.1 19.3 232 11-250 353-620 (638)
46 KOG1155 Anaphase-promoting com 99.5 6.8E-11 1.5E-15 94.4 24.2 254 20-285 236-494 (559)
47 KOG2076 RNA polymerase III tra 99.5 3E-10 6.4E-15 97.5 27.8 117 24-142 152-269 (895)
48 KOG1129 TPR repeat-containing 99.5 1.6E-11 3.4E-16 93.9 18.1 226 17-248 229-456 (478)
49 KOG1129 TPR repeat-containing 99.4 3.2E-11 7E-16 92.2 18.1 232 48-291 227-461 (478)
50 KOG2002 TPR-containing nuclear 99.4 1.1E-10 2.3E-15 100.9 23.0 277 8-292 449-749 (1018)
51 COG3071 HemY Uncharacterized e 99.4 1.7E-09 3.7E-14 85.0 27.1 267 17-295 88-364 (400)
52 KOG1173 Anaphase-promoting com 99.4 3.9E-10 8.5E-15 92.2 24.0 272 10-292 243-522 (611)
53 COG3063 PilF Tfp pilus assembl 99.4 1.2E-09 2.6E-14 79.8 24.0 209 45-261 36-244 (250)
54 KOG1840 Kinesin light chain [C 99.4 2.5E-10 5.5E-15 95.1 23.2 235 12-247 200-476 (508)
55 PF12569 NARP1: NMDA receptor- 99.4 2.9E-09 6.3E-14 89.8 28.9 259 18-285 11-333 (517)
56 KOG1840 Kinesin light chain [C 99.4 1.2E-09 2.6E-14 91.2 26.1 240 44-284 199-477 (508)
57 PRK11189 lipoprotein NlpI; Pro 99.4 2.3E-09 5E-14 85.3 25.7 224 26-262 41-275 (296)
58 KOG1173 Anaphase-promoting com 99.4 1.4E-09 3E-14 89.1 23.7 251 9-269 276-534 (611)
59 COG3063 PilF Tfp pilus assembl 99.3 3.3E-09 7.1E-14 77.5 22.3 206 13-225 37-244 (250)
60 KOG2003 TPR repeat-containing 99.3 1.6E-09 3.4E-14 86.8 22.5 206 57-272 503-709 (840)
61 KOG1174 Anaphase-promoting com 99.3 4.5E-09 9.9E-14 83.1 24.5 262 13-285 234-499 (564)
62 KOG2076 RNA polymerase III tra 99.3 4.7E-09 1E-13 90.3 26.6 273 8-284 170-510 (895)
63 KOG2003 TPR repeat-containing 99.3 7.2E-10 1.6E-14 88.7 20.2 256 20-285 428-688 (840)
64 PRK11189 lipoprotein NlpI; Pro 99.3 2.2E-09 4.7E-14 85.5 23.2 196 11-216 64-266 (296)
65 cd05804 StaR_like StaR_like; a 99.3 1.3E-08 2.7E-13 83.7 27.2 266 18-286 50-336 (355)
66 KOG0495 HAT repeat protein [RN 99.3 3.5E-08 7.5E-13 82.6 28.4 225 14-246 553-778 (913)
67 KOG0495 HAT repeat protein [RN 99.3 3.1E-08 6.7E-13 82.9 28.1 263 12-285 517-781 (913)
68 KOG0547 Translocase of outer m 99.3 2.3E-09 4.9E-14 86.4 20.1 223 19-248 334-564 (606)
69 KOG0547 Translocase of outer m 99.2 1.1E-08 2.4E-13 82.6 21.5 225 51-284 333-564 (606)
70 cd05804 StaR_like StaR_like; a 99.2 2.4E-07 5.2E-12 76.2 29.4 269 11-286 6-293 (355)
71 KOG1915 Cell cycle control pro 99.2 1.5E-07 3.3E-12 76.0 26.5 271 6-284 169-498 (677)
72 KOG1125 TPR repeat-containing 99.2 1.4E-08 3E-13 83.5 20.6 253 20-279 294-564 (579)
73 KOG2002 TPR-containing nuclear 99.2 1E-07 2.3E-12 83.0 26.5 267 10-285 269-558 (1018)
74 PF12569 NARP1: NMDA receptor- 99.1 1.1E-07 2.4E-12 80.4 23.8 228 51-289 11-294 (517)
75 PF04733 Coatomer_E: Coatomer 99.1 2.7E-08 5.9E-13 78.3 18.7 245 22-285 12-264 (290)
76 PF04733 Coatomer_E: Coatomer 99.1 1.7E-08 3.8E-13 79.4 17.3 225 12-251 36-266 (290)
77 KOG1915 Cell cycle control pro 99.1 1.3E-06 2.7E-11 70.9 26.8 265 14-290 76-354 (677)
78 PLN02789 farnesyltranstransfer 99.1 7.3E-07 1.6E-11 71.3 25.8 215 13-234 39-268 (320)
79 KOG1128 Uncharacterized conser 99.1 4.3E-08 9.3E-13 82.9 19.1 222 7-249 394-615 (777)
80 PF12854 PPR_1: PPR repeat 99.0 3.6E-10 7.8E-15 57.8 4.1 32 74-105 2-33 (34)
81 KOG2047 mRNA splicing factor [ 99.0 1.4E-06 3E-11 73.2 26.8 172 116-292 389-584 (835)
82 PF12854 PPR_1: PPR repeat 99.0 5.9E-10 1.3E-14 57.0 4.2 34 5-38 1-34 (34)
83 TIGR03302 OM_YfiO outer membra 99.0 1.3E-07 2.8E-12 73.0 18.4 170 42-215 31-232 (235)
84 TIGR03302 OM_YfiO outer membra 99.0 2.8E-07 6.1E-12 71.1 20.2 190 77-286 31-232 (235)
85 KOG4318 Bicoid mRNA stability 99.0 2.7E-08 5.8E-13 85.8 15.2 217 41-292 22-239 (1088)
86 KOG1070 rRNA processing protei 99.0 7.7E-07 1.7E-11 80.6 24.1 243 29-279 1443-1693(1710)
87 KOG1070 rRNA processing protei 99.0 1.3E-06 2.8E-11 79.2 24.9 203 78-290 1457-1667(1710)
88 PRK14720 transcript cleavage f 98.9 9.2E-07 2E-11 78.7 22.7 231 11-268 31-268 (906)
89 PLN02789 farnesyltranstransfer 98.9 8.9E-06 1.9E-10 65.1 26.0 230 46-284 39-300 (320)
90 KOG1174 Anaphase-promoting com 98.9 3.4E-06 7.5E-11 67.3 22.7 262 14-285 197-466 (564)
91 PRK15359 type III secretion sy 98.9 1.1E-07 2.5E-12 67.0 13.0 108 32-143 14-121 (144)
92 KOG1125 TPR repeat-containing 98.9 3.9E-07 8.4E-12 75.3 17.3 226 51-285 292-526 (579)
93 KOG4340 Uncharacterized conser 98.9 1.2E-06 2.7E-11 66.9 18.6 270 5-282 4-335 (459)
94 PRK10370 formate-dependent nit 98.9 2.1E-07 4.6E-12 69.3 14.6 152 17-183 22-176 (198)
95 COG5010 TadD Flp pilus assembl 98.9 1.3E-06 2.7E-11 65.5 18.1 160 83-248 70-229 (257)
96 KOG4162 Predicted calmodulin-b 98.8 2.1E-05 4.6E-10 67.5 26.9 85 197-285 695-782 (799)
97 COG5010 TadD Flp pilus assembl 98.8 7.5E-07 1.6E-11 66.7 16.3 165 43-214 66-230 (257)
98 KOG1128 Uncharacterized conser 98.8 3E-07 6.4E-12 78.0 15.5 192 11-214 424-615 (777)
99 KOG3785 Uncharacterized conser 98.8 1.7E-05 3.7E-10 62.3 23.9 158 130-294 339-498 (557)
100 PRK04841 transcriptional regul 98.8 1.3E-05 2.8E-10 74.4 27.9 270 17-287 458-761 (903)
101 PRK15359 type III secretion sy 98.8 4.2E-07 9.2E-12 64.1 14.1 93 14-107 27-120 (144)
102 PRK10370 formate-dependent nit 98.8 5.5E-06 1.2E-10 61.8 19.7 120 92-216 52-174 (198)
103 PRK15179 Vi polysaccharide bio 98.7 5.4E-06 1.2E-10 73.0 21.7 134 76-215 83-217 (694)
104 PRK15179 Vi polysaccharide bio 98.7 1.5E-06 3.3E-11 76.4 18.2 146 7-156 82-228 (694)
105 KOG2047 mRNA splicing factor [ 98.7 5.8E-05 1.3E-09 63.8 25.7 260 13-284 104-452 (835)
106 COG4783 Putative Zn-dependent 98.7 2E-05 4.3E-10 64.4 22.6 201 25-251 251-455 (484)
107 KOG1156 N-terminal acetyltrans 98.7 7.7E-05 1.7E-09 63.0 25.8 62 224-287 374-435 (700)
108 TIGR00756 PPR pentatricopeptid 98.7 2.9E-08 6.2E-13 51.5 4.0 34 259-292 2-35 (35)
109 KOG1156 N-terminal acetyltrans 98.7 3.8E-05 8.2E-10 64.8 23.8 260 21-290 51-321 (700)
110 PRK14720 transcript cleavage f 98.7 2E-05 4.4E-10 70.5 22.7 217 43-286 30-252 (906)
111 TIGR02552 LcrH_SycD type III s 98.7 2.5E-06 5.5E-11 59.6 14.2 108 34-143 6-114 (135)
112 PF13812 PPR_3: Pentatricopept 98.6 5.4E-08 1.2E-12 50.1 3.9 33 258-290 2-34 (34)
113 COG4783 Putative Zn-dependent 98.6 9.5E-05 2.1E-09 60.5 23.9 220 18-249 209-436 (484)
114 TIGR00756 PPR pentatricopeptid 98.6 7.6E-08 1.6E-12 49.9 4.3 33 81-113 2-34 (35)
115 TIGR02552 LcrH_SycD type III s 98.6 1.7E-06 3.7E-11 60.5 12.5 107 11-120 17-124 (135)
116 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.9E-06 6.2E-11 69.4 14.7 127 43-177 168-294 (395)
117 PF13812 PPR_3: Pentatricopept 98.6 1.1E-07 2.5E-12 48.8 3.9 32 81-112 3-34 (34)
118 KOG3081 Vesicle coat complex C 98.6 2.2E-05 4.7E-10 59.2 17.1 195 9-216 70-272 (299)
119 PRK04841 transcriptional regul 98.6 0.00022 4.9E-09 66.3 27.9 269 15-285 345-640 (903)
120 KOG4340 Uncharacterized conser 98.5 3.4E-05 7.5E-10 59.2 18.1 232 10-246 43-335 (459)
121 PF09976 TPR_21: Tetratricopep 98.5 9.8E-06 2.1E-10 57.4 14.4 114 57-175 24-142 (145)
122 PF10037 MRP-S27: Mitochondria 98.5 1.6E-06 3.4E-11 71.2 11.2 122 6-127 61-186 (429)
123 PF08579 RPM2: Mitochondrial r 98.5 2.6E-06 5.6E-11 55.4 9.8 81 46-126 27-116 (120)
124 KOG3060 Uncharacterized conser 98.5 0.00017 3.7E-09 54.2 20.5 189 56-251 24-221 (289)
125 KOG2376 Signal recognition par 98.5 0.00043 9.3E-09 58.1 26.0 53 16-68 17-70 (652)
126 KOG3616 Selective LIM binding 98.5 1.2E-05 2.7E-10 68.9 16.3 134 89-246 742-875 (1636)
127 KOG1914 mRNA cleavage and poly 98.5 0.00046 9.9E-09 57.5 26.4 117 173-292 353-470 (656)
128 KOG3060 Uncharacterized conser 98.5 0.00024 5.3E-09 53.4 22.5 186 24-215 25-220 (289)
129 KOG2053 Mitochondrial inherita 98.5 0.00029 6.3E-09 61.9 23.7 134 23-161 21-155 (932)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 3.1E-05 6.8E-10 63.4 17.2 125 81-213 171-295 (395)
131 KOG0624 dsRNA-activated protei 98.5 0.00038 8.3E-09 54.7 22.9 269 8-286 66-370 (504)
132 KOG2053 Mitochondrial inherita 98.5 0.00047 1E-08 60.6 24.6 73 23-97 55-128 (932)
133 PF06239 ECSIT: Evolutionarily 98.4 7.6E-06 1.6E-10 60.0 11.8 101 29-129 32-153 (228)
134 KOG0985 Vesicle coat protein c 98.4 0.00019 4.1E-09 64.0 21.9 175 80-283 1105-1305(1666)
135 KOG3616 Selective LIM binding 98.4 7.7E-05 1.7E-09 64.3 18.7 168 51-245 739-906 (1636)
136 PF09976 TPR_21: Tetratricopep 98.4 7.2E-05 1.6E-09 52.9 15.6 125 12-139 13-143 (145)
137 PF01535 PPR: PPR repeat; Int 98.4 5.4E-07 1.2E-11 45.1 3.2 30 259-288 2-31 (31)
138 PF10037 MRP-S27: Mitochondria 98.4 1.4E-05 3.1E-10 65.8 13.0 120 43-163 65-186 (429)
139 KOG3081 Vesicle coat complex C 98.3 0.00055 1.2E-08 51.9 22.3 244 23-284 20-269 (299)
140 TIGR02795 tol_pal_ybgF tol-pal 98.3 2.1E-05 4.6E-10 53.4 11.9 97 46-142 4-104 (119)
141 cd00189 TPR Tetratricopeptide 98.3 1.5E-05 3.3E-10 51.3 10.5 94 47-142 3-96 (100)
142 KOG4162 Predicted calmodulin-b 98.3 0.00084 1.8E-08 58.2 22.8 229 17-250 484-783 (799)
143 PF08579 RPM2: Mitochondrial r 98.3 1.9E-05 4E-10 51.5 10.0 81 81-162 27-116 (120)
144 KOG3617 WD40 and TPR repeat-co 98.3 4.5E-05 9.8E-10 66.3 15.2 230 20-284 737-994 (1416)
145 TIGR02795 tol_pal_ybgF tol-pal 98.3 5.8E-05 1.3E-09 51.3 13.3 96 13-108 4-105 (119)
146 PF01535 PPR: PPR repeat; Int 98.3 1E-06 2.2E-11 44.1 3.3 27 82-108 3-29 (31)
147 PRK15363 pathogenicity island 98.3 0.00018 3.9E-09 50.5 15.3 104 43-148 34-137 (157)
148 PF05843 Suf: Suppressor of fo 98.3 3.7E-05 8.1E-10 60.7 13.6 130 12-143 2-136 (280)
149 KOG0985 Vesicle coat protein c 98.3 0.0014 3.1E-08 58.7 23.8 237 10-282 983-1245(1666)
150 KOG3785 Uncharacterized conser 98.2 0.00029 6.4E-09 55.6 17.2 124 119-249 364-489 (557)
151 PLN03088 SGT1, suppressor of 98.2 3.6E-05 7.8E-10 63.0 12.7 103 17-122 8-111 (356)
152 cd00189 TPR Tetratricopeptide 98.2 3.8E-05 8.2E-10 49.4 10.6 94 189-285 3-96 (100)
153 PRK10153 DNA-binding transcrip 98.2 0.00016 3.6E-09 61.9 16.8 135 43-182 336-484 (517)
154 PF12895 Apc3: Anaphase-promot 98.1 1E-05 2.2E-10 51.3 6.4 81 199-282 2-83 (84)
155 KOG3617 WD40 and TPR repeat-co 98.1 0.00056 1.2E-08 59.9 18.3 210 10-248 756-994 (1416)
156 PF05843 Suf: Suppressor of fo 98.1 0.00013 2.8E-09 57.7 13.7 135 45-182 2-138 (280)
157 PF12895 Apc3: Anaphase-promot 98.1 5.4E-06 1.2E-10 52.6 4.6 81 57-139 2-83 (84)
158 PRK15363 pathogenicity island 98.1 8.8E-05 1.9E-09 52.0 10.3 92 16-108 40-132 (157)
159 PRK02603 photosystem I assembl 98.0 0.00079 1.7E-08 49.2 15.4 87 43-130 34-122 (172)
160 KOG0548 Molecular co-chaperone 98.0 0.0017 3.8E-08 54.0 18.2 221 47-286 227-455 (539)
161 KOG0624 dsRNA-activated protei 98.0 0.004 8.7E-08 49.2 23.4 225 19-251 114-371 (504)
162 KOG1914 mRNA cleavage and poly 98.0 0.006 1.3E-07 51.2 22.2 210 60-274 309-527 (656)
163 CHL00033 ycf3 photosystem I as 98.0 0.00047 1E-08 50.1 13.7 63 80-142 36-100 (168)
164 PLN03088 SGT1, suppressor of 98.0 0.0005 1.1E-08 56.4 15.1 91 51-143 9-99 (356)
165 KOG2376 Signal recognition par 98.0 0.0073 1.6E-07 51.1 27.2 96 188-285 378-486 (652)
166 KOG1127 TPR repeat-containing 98.0 0.0027 5.9E-08 56.9 19.5 183 94-285 473-658 (1238)
167 PRK02603 photosystem I assembl 98.0 0.00052 1.1E-08 50.1 13.4 92 11-103 35-130 (172)
168 PF14559 TPR_19: Tetratricopep 98.0 1.8E-05 4E-10 47.8 4.8 50 57-107 4-53 (68)
169 CHL00033 ycf3 photosystem I as 98.0 0.00032 7E-09 51.0 11.9 112 27-139 15-138 (168)
170 KOG0548 Molecular co-chaperone 97.9 0.0069 1.5E-07 50.6 20.1 197 14-215 227-455 (539)
171 PF14938 SNAP: Soluble NSF att 97.9 0.0037 8E-08 49.7 18.4 188 48-239 39-252 (282)
172 KOG1127 TPR repeat-containing 97.9 0.0028 6E-08 56.8 18.7 219 59-284 473-698 (1238)
173 PF13432 TPR_16: Tetratricopep 97.9 4.8E-05 1E-09 45.5 5.6 56 51-107 4-59 (65)
174 PRK10153 DNA-binding transcrip 97.9 0.0026 5.7E-08 54.7 17.8 139 109-252 332-484 (517)
175 PF14938 SNAP: Soluble NSF att 97.9 0.0025 5.5E-08 50.6 16.4 199 83-283 39-263 (282)
176 PF04840 Vps16_C: Vps16, C-ter 97.8 0.011 2.3E-07 47.6 22.8 107 152-280 179-285 (319)
177 PF13432 TPR_16: Tetratricopep 97.8 0.00012 2.6E-09 43.7 6.6 56 228-285 4-59 (65)
178 PF06239 ECSIT: Evolutionarily 97.8 0.00042 9.2E-09 51.1 10.3 89 77-166 45-154 (228)
179 KOG1130 Predicted G-alpha GTPa 97.8 0.00029 6.3E-09 56.7 10.1 266 18-287 24-345 (639)
180 PF12688 TPR_5: Tetratrico pep 97.8 0.0036 7.8E-08 42.3 14.0 89 51-141 8-102 (120)
181 PF14559 TPR_19: Tetratricopep 97.8 0.00012 2.6E-09 44.2 6.2 51 23-73 3-54 (68)
182 KOG0553 TPR repeat-containing 97.8 0.00039 8.4E-09 53.6 10.0 104 51-160 88-192 (304)
183 KOG0553 TPR repeat-containing 97.8 0.00024 5.1E-09 54.8 8.7 95 159-260 90-185 (304)
184 PF13414 TPR_11: TPR repeat; P 97.8 0.00021 4.6E-09 43.2 7.0 63 44-107 3-66 (69)
185 PF12688 TPR_5: Tetratrico pep 97.8 0.0031 6.8E-08 42.6 13.1 87 85-171 7-96 (120)
186 PRK10866 outer membrane biogen 97.7 0.012 2.7E-07 45.4 20.0 185 78-284 31-239 (243)
187 PRK10803 tol-pal system protei 97.7 0.00098 2.1E-08 51.9 11.5 96 46-143 145-246 (263)
188 PF13414 TPR_11: TPR repeat; P 97.7 0.00035 7.6E-09 42.3 7.2 64 220-285 2-66 (69)
189 PRK10866 outer membrane biogen 97.7 0.015 3.3E-07 45.0 18.8 184 43-248 31-239 (243)
190 KOG1538 Uncharacterized conser 97.7 0.0042 9E-08 53.2 15.2 261 7-288 552-848 (1081)
191 COG4235 Cytochrome c biogenesi 97.6 0.004 8.6E-08 48.4 13.5 102 77-182 154-258 (287)
192 COG4700 Uncharacterized protei 97.6 0.013 2.8E-07 42.4 18.1 130 76-208 86-215 (251)
193 KOG2796 Uncharacterized conser 97.6 0.019 4.2E-07 43.8 16.4 132 81-215 179-315 (366)
194 PF12921 ATP13: Mitochondrial 97.6 0.0016 3.4E-08 44.5 9.7 57 214-270 45-101 (126)
195 KOG2796 Uncharacterized conser 97.5 0.022 4.8E-07 43.6 17.0 142 115-264 178-326 (366)
196 PF03704 BTAD: Bacterial trans 97.5 0.00084 1.8E-08 47.5 8.1 125 10-152 2-138 (146)
197 PF12921 ATP13: Mitochondrial 97.5 0.0039 8.4E-08 42.6 10.5 51 110-160 48-98 (126)
198 KOG2280 Vacuolar assembly/sort 97.5 0.067 1.4E-06 46.9 20.5 247 12-282 508-795 (829)
199 PF03704 BTAD: Bacterial trans 97.5 0.00061 1.3E-08 48.3 6.8 73 45-118 63-140 (146)
200 COG4235 Cytochrome c biogenesi 97.4 0.0057 1.2E-07 47.6 12.0 109 33-143 144-256 (287)
201 PRK10803 tol-pal system protei 97.4 0.0078 1.7E-07 47.0 12.9 96 117-215 146-246 (263)
202 PF09205 DUF1955: Domain of un 97.4 0.019 4.2E-07 38.9 15.8 140 125-289 13-152 (161)
203 KOG3941 Intermediate in Toll s 97.4 0.0063 1.4E-07 46.9 11.5 113 30-142 53-187 (406)
204 PF13371 TPR_9: Tetratricopept 97.4 0.0011 2.3E-08 40.6 6.3 55 53-108 4-58 (73)
205 PF13281 DUF4071: Domain of un 97.3 0.07 1.5E-06 43.6 19.7 31 220-250 304-334 (374)
206 KOG2041 WD40 repeat protein [G 97.3 0.076 1.6E-06 46.4 17.9 217 8-249 689-951 (1189)
207 PF13424 TPR_12: Tetratricopep 97.3 0.0014 3E-08 40.7 6.1 63 223-285 7-74 (78)
208 PF13371 TPR_9: Tetratricopept 97.2 0.0027 5.9E-08 38.8 7.2 55 195-250 4-58 (73)
209 KOG2114 Vacuolar assembly/sort 97.2 0.037 8E-07 49.0 15.2 185 8-212 331-516 (933)
210 PF13525 YfiO: Outer membrane 97.1 0.065 1.4E-06 40.3 19.1 173 84-277 10-198 (203)
211 COG4700 Uncharacterized protei 97.1 0.055 1.2E-06 39.2 18.9 136 110-249 85-221 (251)
212 KOG2041 WD40 repeat protein [G 97.1 0.097 2.1E-06 45.8 17.0 228 26-283 678-936 (1189)
213 PF13424 TPR_12: Tetratricopep 97.0 0.0034 7.4E-08 38.9 6.3 23 82-104 8-30 (78)
214 PRK15331 chaperone protein Sic 97.0 0.015 3.3E-07 41.2 9.7 90 157-249 44-133 (165)
215 PF13525 YfiO: Outer membrane 96.9 0.1 2.2E-06 39.2 17.2 169 49-240 10-197 (203)
216 PRK15331 chaperone protein Sic 96.9 0.0083 1.8E-07 42.6 7.8 95 47-143 40-134 (165)
217 COG3118 Thioredoxin domain-con 96.8 0.16 3.5E-06 39.7 15.1 49 56-105 146-194 (304)
218 COG1729 Uncharacterized protei 96.8 0.061 1.3E-06 41.5 12.3 97 46-143 144-244 (262)
219 COG3118 Thioredoxin domain-con 96.8 0.15 3.3E-06 39.9 14.4 147 20-169 143-291 (304)
220 PF04053 Coatomer_WDAD: Coatom 96.8 0.092 2E-06 44.4 14.4 131 81-246 297-427 (443)
221 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.029 6.2E-07 46.6 10.9 64 10-73 74-141 (453)
222 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.057 1.2E-06 44.9 12.5 64 43-108 74-141 (453)
223 KOG1130 Predicted G-alpha GTPa 96.7 0.012 2.7E-07 47.8 8.4 230 52-283 25-301 (639)
224 PF10300 DUF3808: Protein of u 96.7 0.26 5.6E-06 42.3 16.9 154 89-247 198-373 (468)
225 PF10300 DUF3808: Protein of u 96.7 0.26 5.5E-06 42.3 16.7 160 121-285 195-375 (468)
226 KOG0543 FKBP-type peptidyl-pro 96.7 0.098 2.1E-06 42.6 12.9 129 51-182 215-357 (397)
227 KOG1941 Acetylcholine receptor 96.6 0.28 6E-06 39.6 15.0 223 23-248 18-273 (518)
228 KOG0550 Molecular chaperone (D 96.6 0.2 4.3E-06 41.1 14.2 260 18-286 56-350 (486)
229 KOG0543 FKBP-type peptidyl-pro 96.6 0.12 2.6E-06 42.1 13.0 96 187-285 258-354 (397)
230 KOG2610 Uncharacterized conser 96.5 0.3 6.5E-06 39.0 15.7 160 24-186 116-283 (491)
231 COG3629 DnrI DNA-binding trans 96.5 0.032 6.9E-07 43.6 9.3 80 44-124 153-237 (280)
232 smart00299 CLH Clathrin heavy 96.5 0.16 3.5E-06 35.5 16.2 127 117-269 10-137 (140)
233 PF04053 Coatomer_WDAD: Coatom 96.5 0.31 6.7E-06 41.4 15.4 157 87-282 269-427 (443)
234 PF13428 TPR_14: Tetratricopep 96.4 0.0072 1.6E-07 32.7 3.9 28 46-73 3-30 (44)
235 PF08631 SPO22: Meiosis protei 96.4 0.35 7.5E-06 38.4 25.6 225 55-284 4-273 (278)
236 COG3629 DnrI DNA-binding trans 96.3 0.079 1.7E-06 41.5 10.4 82 79-161 153-238 (280)
237 PF04840 Vps16_C: Vps16, C-ter 96.3 0.46 9.9E-06 38.4 23.2 110 115-246 178-287 (319)
238 PRK11906 transcriptional regul 96.3 0.57 1.2E-05 39.3 15.5 157 15-175 257-432 (458)
239 COG1729 Uncharacterized protei 96.3 0.15 3.3E-06 39.3 11.4 90 91-181 153-245 (262)
240 PF13281 DUF4071: Domain of un 96.2 0.55 1.2E-05 38.6 21.8 32 255-286 303-334 (374)
241 PF04184 ST7: ST7 protein; In 96.2 0.65 1.4E-05 39.3 17.0 79 190-268 263-342 (539)
242 COG5107 RNA14 Pre-mRNA 3'-end 96.2 0.64 1.4E-05 38.8 19.0 130 115-249 398-530 (660)
243 KOG1538 Uncharacterized conser 96.1 0.51 1.1E-05 41.2 14.8 218 10-250 597-846 (1081)
244 COG5107 RNA14 Pre-mRNA 3'-end 96.1 0.65 1.4E-05 38.8 17.3 148 79-232 397-546 (660)
245 PF09205 DUF1955: Domain of un 96.1 0.25 5.3E-06 33.8 16.2 140 89-252 12-151 (161)
246 COG3898 Uncharacterized membra 96.0 0.67 1.5E-05 37.9 25.7 253 24-290 133-396 (531)
247 smart00299 CLH Clathrin heavy 96.0 0.31 6.8E-06 34.0 15.1 43 49-92 12-54 (140)
248 PF10602 RPN7: 26S proteasome 96.0 0.33 7.2E-06 35.5 11.8 98 45-142 37-141 (177)
249 PF13170 DUF4003: Protein of u 96.0 0.56 1.2E-05 37.5 13.9 129 96-227 79-223 (297)
250 KOG1941 Acetylcholine receptor 96.0 0.66 1.4E-05 37.6 13.9 198 13-212 45-272 (518)
251 KOG3941 Intermediate in Toll s 96.0 0.1 2.2E-06 40.6 9.1 89 77-166 65-174 (406)
252 PF13428 TPR_14: Tetratricopep 95.9 0.036 7.8E-07 29.9 5.1 28 81-108 3-30 (44)
253 PF07035 Mic1: Colon cancer-as 95.8 0.46 1E-05 34.2 16.4 51 66-120 16-66 (167)
254 KOG4555 TPR repeat-containing 95.8 0.29 6.3E-06 33.4 9.6 90 123-216 52-145 (175)
255 PF10602 RPN7: 26S proteasome 95.8 0.27 5.9E-06 36.0 10.6 96 80-176 37-138 (177)
256 PF09613 HrpB1_HrpK: Bacterial 95.7 0.49 1.1E-05 33.7 11.0 52 55-108 21-73 (160)
257 KOG4555 TPR repeat-containing 95.7 0.24 5.2E-06 33.8 8.8 92 51-143 50-144 (175)
258 PF04184 ST7: ST7 protein; In 95.5 0.68 1.5E-05 39.2 12.9 59 226-284 264-322 (539)
259 PF08631 SPO22: Meiosis protei 95.5 0.96 2.1E-05 35.9 25.4 222 21-248 3-273 (278)
260 PF07079 DUF1347: Protein of u 95.5 1.3 2.8E-05 37.1 22.6 257 21-285 16-326 (549)
261 COG0457 NrfG FOG: TPR repeat [ 95.4 0.8 1.7E-05 34.4 25.5 220 25-249 37-264 (291)
262 COG0457 NrfG FOG: TPR repeat [ 95.3 0.85 1.8E-05 34.2 26.6 224 57-285 36-264 (291)
263 PF07035 Mic1: Colon cancer-as 95.3 0.72 1.6E-05 33.2 15.3 55 226-285 94-148 (167)
264 PF13929 mRNA_stabil: mRNA sta 95.3 1.1 2.4E-05 35.2 13.4 117 129-246 143-263 (292)
265 PF13512 TPR_18: Tetratricopep 95.2 0.67 1.4E-05 32.3 12.8 76 122-198 18-94 (142)
266 PF13512 TPR_18: Tetratricopep 95.2 0.67 1.5E-05 32.3 11.3 53 56-108 22-76 (142)
267 PF13176 TPR_7: Tetratricopept 95.1 0.064 1.4E-06 27.4 4.0 23 82-104 2-24 (36)
268 PF13176 TPR_7: Tetratricopept 95.1 0.028 6.2E-07 28.8 2.6 25 260-284 2-26 (36)
269 KOG0550 Molecular chaperone (D 94.9 1.8 3.9E-05 35.8 16.4 154 88-250 178-350 (486)
270 PRK11906 transcriptional regul 94.5 2.7 5.8E-05 35.6 15.6 158 118-280 257-430 (458)
271 TIGR02561 HrpB1_HrpK type III 94.4 1.2 2.6E-05 31.2 9.8 50 24-73 23-73 (153)
272 PF00515 TPR_1: Tetratricopept 94.3 0.14 2.9E-06 25.6 4.0 27 259-285 3-29 (34)
273 PF09613 HrpB1_HrpK: Bacterial 94.3 1.3 2.9E-05 31.5 10.8 117 152-278 9-130 (160)
274 PF02284 COX5A: Cytochrome c o 94.3 0.58 1.3E-05 30.3 7.5 60 204-265 28-87 (108)
275 PF13431 TPR_17: Tetratricopep 94.2 0.032 6.9E-07 28.2 1.5 21 43-63 12-32 (34)
276 COG3898 Uncharacterized membra 94.2 2.6 5.7E-05 34.7 24.1 220 21-250 164-392 (531)
277 PF02259 FAT: FAT domain; Int 94.2 2.6 5.6E-05 34.6 19.5 193 17-214 4-212 (352)
278 KOG2114 Vacuolar assembly/sort 94.2 3.2 6.9E-05 37.6 14.1 246 10-286 282-550 (933)
279 cd00923 Cyt_c_Oxidase_Va Cytoc 94.2 0.52 1.1E-05 30.2 7.0 46 97-142 25-70 (103)
280 PF11207 DUF2989: Protein of u 94.2 1.1 2.4E-05 33.3 9.7 81 89-171 117-199 (203)
281 KOG2610 Uncharacterized conser 94.1 2.5 5.5E-05 34.0 16.7 150 57-211 116-272 (491)
282 COG4105 ComL DNA uptake lipopr 94.1 2.1 4.6E-05 33.0 18.3 54 90-143 45-100 (254)
283 KOG4570 Uncharacterized conser 94.0 0.5 1.1E-05 37.4 8.1 99 6-108 59-164 (418)
284 PF13929 mRNA_stabil: mRNA sta 94.0 2.4 5.2E-05 33.4 13.0 64 146-210 198-262 (292)
285 cd00923 Cyt_c_Oxidase_Va Cytoc 94.0 0.7 1.5E-05 29.6 7.3 63 201-265 22-84 (103)
286 KOG1550 Extracellular protein 94.0 2.9 6.3E-05 36.9 13.8 124 160-287 259-394 (552)
287 PF13431 TPR_17: Tetratricopep 93.9 0.082 1.8E-06 26.6 2.7 31 68-99 3-33 (34)
288 PF00637 Clathrin: Region in C 93.8 0.058 1.3E-06 37.9 2.7 129 120-273 13-141 (143)
289 COG4649 Uncharacterized protei 93.8 1.8 4E-05 31.3 14.8 122 56-179 70-195 (221)
290 COG2976 Uncharacterized protei 93.8 1.2 2.6E-05 32.8 9.1 126 11-143 54-188 (207)
291 KOG1920 IkappaB kinase complex 93.7 6.5 0.00014 37.3 18.2 219 42-283 789-1052(1265)
292 PF00515 TPR_1: Tetratricopept 93.6 0.25 5.3E-06 24.6 4.2 25 82-106 4-28 (34)
293 COG4649 Uncharacterized protei 93.3 2.3 4.9E-05 30.8 14.8 137 114-253 59-199 (221)
294 PRK09687 putative lyase; Provi 93.3 3.4 7.4E-05 32.9 27.9 218 42-285 35-262 (280)
295 PF07719 TPR_2: Tetratricopept 93.2 0.29 6.3E-06 24.2 4.1 26 260-285 4-29 (34)
296 COG4785 NlpI Lipoprotein NlpI, 93.2 2.9 6.2E-05 31.6 13.5 30 222-251 238-267 (297)
297 COG1747 Uncharacterized N-term 93.2 5 0.00011 34.4 20.5 180 77-267 64-249 (711)
298 PF13170 DUF4003: Protein of u 93.1 3.8 8.3E-05 32.9 18.9 132 60-195 78-226 (297)
299 COG4105 ComL DNA uptake lipopr 93.0 3.4 7.3E-05 32.0 19.8 184 43-249 34-232 (254)
300 PF11207 DUF2989: Protein of u 92.9 1.9 4.2E-05 32.0 9.3 80 123-206 116-198 (203)
301 PF02284 COX5A: Cytochrome c o 92.9 1.7 3.7E-05 28.2 9.9 60 97-158 28-87 (108)
302 PF13374 TPR_10: Tetratricopep 92.8 0.37 8E-06 25.1 4.3 27 80-106 3-29 (42)
303 COG2976 Uncharacterized protei 92.6 2.3 5.1E-05 31.4 9.1 88 194-287 97-189 (207)
304 PF13374 TPR_10: Tetratricopep 92.5 0.34 7.4E-06 25.3 4.0 28 258-285 3-30 (42)
305 COG4455 ImpE Protein of avirul 92.4 1 2.2E-05 33.8 7.2 76 13-88 3-81 (273)
306 KOG1585 Protein required for f 92.4 4.1 8.9E-05 31.4 15.4 90 153-244 153-250 (308)
307 KOG2582 COP9 signalosome, subu 92.2 5.5 0.00012 32.5 13.9 128 9-143 73-212 (422)
308 PF07719 TPR_2: Tetratricopept 92.2 0.5 1.1E-05 23.3 4.2 24 83-106 5-28 (34)
309 KOG0276 Vesicle coat complex C 91.8 3.2 7E-05 36.2 10.4 132 11-175 614-745 (794)
310 PF00637 Clathrin: Region in C 91.8 0.047 1E-06 38.4 -0.1 53 51-103 14-66 (143)
311 KOG0276 Vesicle coat complex C 91.6 5.7 0.00012 34.8 11.6 150 22-211 597-746 (794)
312 KOG2280 Vacuolar assembly/sort 91.6 9.9 0.00022 34.2 22.3 86 187-283 685-770 (829)
313 PF02259 FAT: FAT domain; Int 91.5 6.8 0.00015 32.1 16.5 65 221-285 146-212 (352)
314 COG1747 Uncharacterized N-term 91.1 9.3 0.0002 32.9 20.2 164 43-216 65-235 (711)
315 KOG1585 Protein required for f 91.0 5.9 0.00013 30.6 14.3 210 44-280 31-250 (308)
316 KOG4570 Uncharacterized conser 91.0 6.3 0.00014 31.6 10.5 103 74-179 59-164 (418)
317 KOG1920 IkappaB kinase complex 90.9 15 0.00033 35.1 17.9 217 12-248 791-1053(1265)
318 COG3947 Response regulator con 90.6 7.3 0.00016 30.9 11.7 53 52-105 287-339 (361)
319 KOG1586 Protein required for f 90.4 6.6 0.00014 30.1 14.2 29 160-189 164-192 (288)
320 PRK09687 putative lyase; Provi 90.4 7.8 0.00017 30.9 24.6 236 8-269 34-279 (280)
321 PHA02875 ankyrin repeat protei 90.2 8.5 0.00018 32.6 12.0 80 18-102 6-88 (413)
322 TIGR02561 HrpB1_HrpK type III 90.0 5.2 0.00011 28.2 9.7 64 150-216 7-74 (153)
323 PF13181 TPR_8: Tetratricopept 89.9 1 2.3E-05 22.2 4.0 27 259-285 3-29 (34)
324 TIGR03504 FimV_Cterm FimV C-te 89.2 0.8 1.7E-05 24.6 3.2 25 263-287 5-29 (44)
325 PF07163 Pex26: Pex26 protein; 89.0 9.8 0.00021 30.0 10.1 87 51-137 90-181 (309)
326 PF10579 Rapsyn_N: Rapsyn N-te 88.5 1.6 3.5E-05 26.8 4.6 47 233-279 18-65 (80)
327 PF13181 TPR_8: Tetratricopept 88.3 1.9 4.1E-05 21.2 4.3 25 82-106 4-28 (34)
328 PF09477 Type_III_YscG: Bacter 87.9 5.8 0.00013 26.1 8.7 85 129-223 21-105 (116)
329 PF07721 TPR_4: Tetratricopept 87.8 0.99 2.1E-05 20.9 2.8 11 54-64 11-21 (26)
330 COG2909 MalT ATP-dependent tra 87.8 23 0.0005 32.8 23.9 199 90-290 426-651 (894)
331 PF13174 TPR_6: Tetratricopept 87.5 1.3 2.7E-05 21.5 3.3 24 227-250 6-29 (33)
332 PRK15180 Vi polysaccharide bio 87.4 7.2 0.00016 33.3 9.0 119 56-180 301-420 (831)
333 PRK15180 Vi polysaccharide bio 87.3 18 0.00038 31.1 13.6 119 91-215 301-420 (831)
334 TIGR03504 FimV_Cterm FimV C-te 87.0 2 4.3E-05 23.1 3.9 20 87-106 7-26 (44)
335 KOG4077 Cytochrome c oxidase, 86.9 7.1 0.00015 26.6 7.2 46 98-143 68-113 (149)
336 KOG4077 Cytochrome c oxidase, 86.7 6.8 0.00015 26.7 7.0 47 62-108 67-113 (149)
337 KOG4648 Uncharacterized conser 86.7 6.3 0.00014 32.0 8.1 92 19-113 105-197 (536)
338 PF07163 Pex26: Pex26 protein; 86.2 15 0.00032 29.1 10.0 88 83-171 87-179 (309)
339 KOG4234 TPR repeat-containing 86.2 10 0.00022 28.4 8.3 91 51-143 102-197 (271)
340 PF06552 TOM20_plant: Plant sp 86.1 11 0.00024 27.5 8.8 29 130-161 96-124 (186)
341 TIGR02508 type_III_yscG type I 86.1 7.3 0.00016 25.3 8.6 85 130-224 21-105 (115)
342 PF04097 Nic96: Nup93/Nic96; 85.7 27 0.00058 31.5 16.0 65 9-73 109-181 (613)
343 KOG1464 COP9 signalosome, subu 84.9 17 0.00037 28.6 17.0 188 93-282 41-257 (440)
344 COG4785 NlpI Lipoprotein NlpI, 84.7 15 0.00034 27.9 15.1 183 21-216 75-267 (297)
345 TIGR02508 type_III_yscG type I 84.4 9 0.00019 25.0 6.6 88 25-119 19-107 (115)
346 PF11846 DUF3366: Domain of un 84.4 6.6 0.00014 29.2 7.2 33 217-249 140-172 (193)
347 KOG1550 Extracellular protein 84.4 29 0.00064 30.8 20.3 178 60-249 228-425 (552)
348 PF13762 MNE1: Mitochondrial s 84.3 12 0.00026 26.3 11.5 82 46-127 41-128 (145)
349 KOG0890 Protein kinase of the 84.3 57 0.0012 34.1 22.6 62 223-288 1672-1733(2382)
350 KOG4648 Uncharacterized conser 83.7 5.4 0.00012 32.4 6.5 55 158-214 105-159 (536)
351 PF11817 Foie-gras_1: Foie gra 83.7 8.4 0.00018 30.0 7.7 61 224-284 181-245 (247)
352 COG4455 ImpE Protein of avirul 83.5 18 0.00038 27.6 11.0 77 46-123 3-81 (273)
353 KOG2908 26S proteasome regulat 82.8 14 0.00031 30.0 8.4 81 12-92 76-169 (380)
354 PF04097 Nic96: Nup93/Nic96; 82.6 37 0.00081 30.7 14.2 63 47-110 114-183 (613)
355 PF10579 Rapsyn_N: Rapsyn N-te 82.5 6.2 0.00013 24.3 5.0 45 91-135 18-64 (80)
356 PF14689 SPOB_a: Sensor_kinase 82.5 6.2 0.00014 23.1 5.0 23 226-248 28-50 (62)
357 PF06552 TOM20_plant: Plant sp 81.9 12 0.00026 27.4 7.2 107 27-143 7-136 (186)
358 KOG3364 Membrane protein invol 81.8 15 0.00032 25.6 8.6 67 185-251 31-101 (149)
359 KOG4507 Uncharacterized conser 81.6 27 0.00058 30.9 10.1 147 112-264 569-717 (886)
360 KOG0686 COP9 signalosome, subu 81.0 32 0.00069 28.9 14.7 166 45-214 151-332 (466)
361 KOG2396 HAT (Half-A-TPR) repea 80.8 36 0.00079 29.4 23.0 244 30-285 301-558 (568)
362 smart00028 TPR Tetratricopepti 80.3 3 6.5E-05 19.3 2.9 27 46-72 3-29 (34)
363 PF14689 SPOB_a: Sensor_kinase 80.0 6.4 0.00014 23.0 4.5 46 237-285 6-51 (62)
364 COG0735 Fur Fe2+/Zn2+ uptake r 78.9 14 0.0003 26.1 6.7 61 67-128 9-69 (145)
365 PF11817 Foie-gras_1: Foie gra 78.8 18 0.0004 28.2 8.0 58 83-140 182-244 (247)
366 KOG4234 TPR repeat-containing 78.4 26 0.00056 26.3 8.6 85 123-215 104-197 (271)
367 PF08311 Mad3_BUB1_I: Mad3/BUB 78.3 19 0.00041 24.7 9.9 45 239-283 81-125 (126)
368 PF11838 ERAP1_C: ERAP1-like C 78.2 35 0.00075 27.7 19.0 144 130-281 146-303 (324)
369 smart00638 LPD_N Lipoprotein N 78.1 51 0.0011 29.5 22.1 200 42-249 308-524 (574)
370 PF07079 DUF1347: Protein of u 78.1 43 0.00093 28.7 22.8 243 6-264 255-532 (549)
371 COG3947 Response regulator con 77.7 34 0.00075 27.4 16.0 60 189-249 282-341 (361)
372 KOG2063 Vacuolar assembly/sort 77.5 65 0.0014 30.4 16.7 116 46-162 506-638 (877)
373 PF11846 DUF3366: Domain of un 77.4 18 0.00038 26.9 7.3 55 126-181 120-174 (193)
374 PF12862 Apc5: Anaphase-promot 77.3 14 0.0003 23.7 5.9 68 197-264 9-84 (94)
375 PF11848 DUF3368: Domain of un 77.1 9.9 0.00022 20.8 5.0 33 197-229 13-45 (48)
376 PF11663 Toxin_YhaV: Toxin wit 76.9 3 6.4E-05 28.7 2.7 32 91-124 107-138 (140)
377 COG5187 RPN7 26S proteasome re 76.7 37 0.0008 27.2 11.8 98 43-142 114-220 (412)
378 KOG0687 26S proteasome regulat 76.6 39 0.00086 27.5 15.5 136 110-250 66-210 (393)
379 COG5187 RPN7 26S proteasome re 76.4 38 0.00081 27.1 13.4 135 111-250 78-221 (412)
380 smart00638 LPD_N Lipoprotein N 76.0 58 0.0013 29.1 22.6 61 12-75 311-371 (574)
381 PRK11619 lytic murein transgly 75.5 65 0.0014 29.4 23.7 79 202-284 295-373 (644)
382 PF14853 Fis1_TPR_C: Fis1 C-te 75.3 5.2 0.00011 22.5 3.0 23 227-249 7-29 (53)
383 PF11848 DUF3368: Domain of un 75.1 12 0.00025 20.6 4.9 26 93-118 16-41 (48)
384 KOG2659 LisH motif-containing 75.0 35 0.00076 26.1 9.8 99 41-141 23-130 (228)
385 PF10345 Cohesin_load: Cohesin 74.7 66 0.0014 29.1 19.3 195 42-247 28-251 (608)
386 COG5159 RPN6 26S proteasome re 74.7 42 0.00091 26.8 11.7 34 85-118 9-42 (421)
387 KOG4507 Uncharacterized conser 73.9 22 0.00047 31.4 7.5 101 57-160 620-720 (886)
388 KOG1258 mRNA processing protei 73.4 66 0.0014 28.5 19.4 184 78-272 296-490 (577)
389 PRK10941 hypothetical protein; 73.3 44 0.00096 26.5 10.3 79 189-269 184-263 (269)
390 PRK10564 maltose regulon perip 72.5 9.5 0.00021 30.4 4.9 29 83-111 261-289 (303)
391 smart00386 HAT HAT (Half-A-TPR 72.1 6.6 0.00014 18.6 2.8 15 59-73 2-16 (33)
392 PF09670 Cas_Cas02710: CRISPR- 71.6 60 0.0013 27.3 11.5 57 51-108 138-198 (379)
393 PF14669 Asp_Glu_race_2: Putat 71.6 39 0.00085 25.2 16.3 70 73-142 2-79 (233)
394 PF10366 Vps39_1: Vacuolar sor 71.6 27 0.00058 23.2 7.5 27 81-107 41-67 (108)
395 PRK10564 maltose regulon perip 71.4 11 0.00024 30.1 5.0 40 43-82 256-295 (303)
396 COG0735 Fur Fe2+/Zn2+ uptake r 71.3 33 0.00071 24.2 7.0 65 100-166 7-71 (145)
397 KOG4567 GTPase-activating prot 71.2 36 0.00078 27.4 7.6 44 99-142 263-306 (370)
398 COG5108 RPO41 Mitochondrial DN 71.1 30 0.00066 31.1 7.8 73 16-91 33-115 (1117)
399 COG5108 RPO41 Mitochondrial DN 70.7 49 0.0011 29.9 9.0 75 49-126 33-115 (1117)
400 PRK11639 zinc uptake transcrip 70.4 34 0.00073 24.9 7.1 59 70-129 17-75 (169)
401 PF10345 Cohesin_load: Cohesin 70.1 85 0.0018 28.4 19.4 195 78-284 29-252 (608)
402 PF10366 Vps39_1: Vacuolar sor 69.8 30 0.00064 23.0 7.6 26 117-142 42-67 (108)
403 cd00280 TRFH Telomeric Repeat 69.5 43 0.00093 24.8 7.7 49 95-143 85-140 (200)
404 KOG1464 COP9 signalosome, subu 69.1 56 0.0012 25.9 18.1 155 23-178 39-218 (440)
405 PF13934 ELYS: Nuclear pore co 69.1 49 0.0011 25.5 8.0 104 13-125 78-183 (226)
406 KOG2063 Vacuolar assembly/sort 69.0 1.1E+02 0.0023 29.1 15.6 169 116-285 506-712 (877)
407 KOG2062 26S proteasome regulat 69.0 96 0.0021 28.5 10.8 120 124-249 511-634 (929)
408 cd08819 CARD_MDA5_2 Caspase ac 68.8 27 0.00058 22.1 6.1 65 63-133 21-85 (88)
409 PF04190 DUF410: Protein of un 68.4 57 0.0012 25.7 17.2 23 149-171 89-111 (260)
410 PF10255 Paf67: RNA polymerase 68.2 39 0.00085 28.5 7.8 61 224-284 125-191 (404)
411 cd00280 TRFH Telomeric Repeat 67.7 47 0.001 24.6 7.6 65 60-127 85-156 (200)
412 PF10255 Paf67: RNA polymerase 67.3 78 0.0017 26.9 11.4 62 116-178 124-191 (404)
413 PF14669 Asp_Glu_race_2: Putat 67.1 51 0.0011 24.6 12.0 171 5-176 2-206 (233)
414 PRK09857 putative transposase; 66.9 65 0.0014 25.9 8.6 66 224-291 209-274 (292)
415 PF11663 Toxin_YhaV: Toxin wit 66.5 8.2 0.00018 26.6 3.0 31 198-230 107-137 (140)
416 KOG0687 26S proteasome regulat 65.6 74 0.0016 26.0 11.8 96 45-142 105-209 (393)
417 PF09454 Vps23_core: Vps23 cor 65.6 18 0.00039 21.4 4.0 31 79-109 8-38 (65)
418 TIGR03184 DNA_S_dndE DNA sulfu 65.4 37 0.0008 22.4 6.1 90 131-234 5-97 (105)
419 PRK12356 glutaminase; Reviewed 65.2 41 0.00089 27.3 7.1 14 145-158 93-106 (319)
420 PF13762 MNE1: Mitochondrial s 65.1 46 0.001 23.5 12.2 83 153-236 42-130 (145)
421 PF09477 Type_III_YscG: Bacter 65.1 38 0.00082 22.5 8.6 29 255-285 69-97 (116)
422 PRK09462 fur ferric uptake reg 64.9 45 0.00099 23.5 6.8 35 94-128 32-66 (148)
423 COG2178 Predicted RNA-binding 64.3 58 0.0012 24.3 10.4 17 198-214 133-149 (204)
424 KOG2659 LisH motif-containing 64.3 63 0.0014 24.8 9.5 99 6-104 21-128 (228)
425 COG5159 RPN6 26S proteasome re 63.9 75 0.0016 25.5 11.9 48 18-65 10-66 (421)
426 PF12862 Apc5: Anaphase-promot 63.0 37 0.0008 21.7 7.0 19 124-142 51-69 (94)
427 PF09454 Vps23_core: Vps23 cor 61.6 20 0.00043 21.2 3.7 49 219-269 6-54 (65)
428 PF08870 DUF1832: Domain of un 61.4 47 0.001 22.3 6.1 89 131-234 6-95 (113)
429 PF11768 DUF3312: Protein of u 61.3 1.2E+02 0.0025 26.8 11.7 26 117-142 411-436 (545)
430 PF08424 NRDE-2: NRDE-2, neces 61.1 91 0.002 25.5 16.5 137 41-180 15-183 (321)
431 KOG0376 Serine-threonine phosp 61.1 21 0.00046 30.5 5.0 107 17-127 10-118 (476)
432 KOG2471 TPR repeat-containing 60.7 1.1E+02 0.0024 26.7 9.0 106 54-162 250-381 (696)
433 PRK14956 DNA polymerase III su 60.2 1.1E+02 0.0025 26.6 9.2 58 57-115 213-284 (484)
434 PLN03025 replication factor C 60.2 93 0.002 25.3 10.2 71 179-252 173-255 (319)
435 PF08311 Mad3_BUB1_I: Mad3/BUB 59.9 53 0.0012 22.5 9.2 43 97-139 81-124 (126)
436 KOG2300 Uncharacterized conser 59.8 1.2E+02 0.0026 26.5 13.9 151 126-281 335-509 (629)
437 KOG0890 Protein kinase of the 59.8 2.4E+02 0.0053 30.1 19.9 62 187-251 1671-1732(2382)
438 PRK14700 recombination factor 59.5 93 0.002 25.1 9.9 27 43-71 66-92 (300)
439 KOG2297 Predicted translation 59.2 96 0.0021 25.2 17.2 17 223-239 323-339 (412)
440 PRK10941 hypothetical protein; 57.9 94 0.002 24.7 10.7 57 120-179 187-243 (269)
441 cd08819 CARD_MDA5_2 Caspase ac 57.5 47 0.001 21.1 7.1 66 205-277 21-86 (88)
442 KOG4567 GTPase-activating prot 56.6 91 0.002 25.3 7.4 57 206-268 263-319 (370)
443 PF09986 DUF2225: Uncharacteri 56.6 87 0.0019 23.9 10.4 22 265-286 173-194 (214)
444 KOG1498 26S proteasome regulat 56.6 1.2E+02 0.0026 25.5 15.2 89 192-287 137-242 (439)
445 COG2987 HutU Urocanate hydrata 56.4 15 0.00032 31.1 3.3 48 233-294 215-262 (561)
446 KOG2471 TPR repeat-containing 56.3 1.4E+02 0.003 26.1 9.3 109 158-270 248-382 (696)
447 PF11123 DNA_Packaging_2: DNA 56.2 44 0.00095 20.3 5.3 33 25-57 11-44 (82)
448 PF02847 MA3: MA3 domain; Int 56.2 48 0.001 21.9 5.4 21 85-105 8-28 (113)
449 PF02847 MA3: MA3 domain; Int 55.7 57 0.0012 21.5 6.9 20 51-70 9-28 (113)
450 PF02184 HAT: HAT (Half-A-TPR) 55.6 16 0.00035 18.1 2.2 21 27-47 3-23 (32)
451 PF05944 Phage_term_smal: Phag 55.2 47 0.001 23.0 5.2 30 226-255 53-82 (132)
452 KOG0686 COP9 signalosome, subu 54.8 1.3E+02 0.0029 25.5 12.2 91 12-104 151-254 (466)
453 PRK14961 DNA polymerase III su 54.5 1.3E+02 0.0028 25.2 10.3 14 199-212 211-224 (363)
454 PHA02875 ankyrin repeat protei 54.0 1.4E+02 0.0029 25.3 17.2 185 16-221 37-230 (413)
455 PF07575 Nucleopor_Nup85: Nup8 53.9 34 0.00074 30.5 5.5 167 10-195 371-539 (566)
456 PF11838 ERAP1_C: ERAP1-like C 53.3 1.2E+02 0.0026 24.5 17.6 147 95-248 146-302 (324)
457 COG4941 Predicted RNA polymera 53.2 1.3E+02 0.0028 24.8 11.2 19 196-214 375-393 (415)
458 cd07153 Fur_like Ferric uptake 52.9 37 0.0008 22.6 4.5 36 93-128 14-49 (116)
459 PF09670 Cas_Cas02710: CRISPR- 52.7 1.4E+02 0.0031 25.2 12.2 55 88-143 140-198 (379)
460 TIGR03814 Gln_ase glutaminase 52.4 98 0.0021 25.0 7.2 15 274-288 221-235 (300)
461 KOG4642 Chaperone-dependent E3 52.3 1.1E+02 0.0024 23.9 9.9 99 23-123 22-126 (284)
462 KOG2297 Predicted translation 52.2 1.3E+02 0.0028 24.5 15.5 19 187-205 322-340 (412)
463 KOG3807 Predicted membrane pro 51.9 1.3E+02 0.0029 24.7 11.1 164 17-193 190-354 (556)
464 PF05944 Phage_term_smal: Phag 51.9 57 0.0012 22.6 5.2 36 254-290 46-81 (132)
465 PF12926 MOZART2: Mitotic-spin 51.8 59 0.0013 20.6 7.9 43 100-142 29-71 (88)
466 TIGR03581 EF_0839 conserved hy 51.8 68 0.0015 24.4 5.7 83 202-284 137-235 (236)
467 KOG2300 Uncharacterized conser 51.2 1.7E+02 0.0037 25.6 20.3 151 88-247 332-511 (629)
468 PRK12357 glutaminase; Reviewed 51.1 1.4E+02 0.003 24.5 8.3 13 109-121 97-109 (326)
469 PRK12798 chemotaxis protein; R 50.8 1.6E+02 0.0034 25.1 21.1 226 65-292 98-330 (421)
470 KOG3677 RNA polymerase I-assoc 50.7 1.6E+02 0.0034 25.1 9.0 59 48-106 239-299 (525)
471 KOG1258 mRNA processing protei 50.7 1.8E+02 0.004 25.9 21.0 185 43-236 296-490 (577)
472 KOG1308 Hsp70-interacting prot 50.5 15 0.00033 29.9 2.5 50 57-107 127-176 (377)
473 PF15297 CKAP2_C: Cytoskeleton 50.5 1.4E+02 0.0031 24.6 9.0 64 60-125 119-186 (353)
474 PHA03100 ankyrin repeat protei 49.9 1.7E+02 0.0037 25.3 12.8 19 17-35 38-56 (480)
475 PF03745 DUF309: Domain of unk 49.9 51 0.0011 19.3 6.3 46 56-101 11-61 (62)
476 cd07153 Fur_like Ferric uptake 49.2 60 0.0013 21.5 5.1 46 193-238 7-52 (116)
477 PF01475 FUR: Ferric uptake re 48.8 31 0.00068 23.2 3.6 44 85-128 13-56 (120)
478 PF08424 NRDE-2: NRDE-2, neces 48.8 1.5E+02 0.0032 24.3 18.7 98 76-177 16-128 (321)
479 TIGR03581 EF_0839 conserved hy 48.7 1.1E+02 0.0024 23.4 6.4 32 27-58 137-177 (236)
480 KOG3364 Membrane protein invol 48.4 93 0.002 21.8 9.9 68 76-143 29-100 (149)
481 PRK08691 DNA polymerase III su 48.4 2.3E+02 0.0049 26.3 10.7 16 199-214 211-226 (709)
482 COG0790 FOG: TPR repeat, SEL1 47.6 1.4E+02 0.0031 23.7 21.2 16 236-251 252-267 (292)
483 PRK09857 putative transposase; 47.5 1.5E+02 0.0032 23.9 9.0 59 84-143 211-269 (292)
484 KOG2066 Vacuolar assembly/sort 47.3 2.4E+02 0.0052 26.3 12.7 170 86-288 363-536 (846)
485 smart00777 Mad3_BUB1_I Mad3/BU 47.1 92 0.002 21.4 8.8 43 239-281 81-123 (125)
486 TIGR01228 hutU urocanate hydra 47.0 30 0.00064 29.8 3.7 47 234-294 207-253 (545)
487 PF10155 DUF2363: Uncharacteri 46.8 94 0.002 21.4 10.5 111 26-141 4-125 (126)
488 PRK14951 DNA polymerase III su 46.0 2.4E+02 0.0051 25.8 10.6 14 199-212 216-229 (618)
489 smart00804 TAP_C C-terminal do 45.7 23 0.0005 20.8 2.2 15 129-143 40-54 (63)
490 PRK14958 DNA polymerase III su 45.2 2.2E+02 0.0048 25.2 10.9 15 199-213 211-225 (509)
491 PF14853 Fis1_TPR_C: Fis1 C-te 45.2 56 0.0012 18.4 5.4 30 192-223 7-36 (53)
492 PRK05414 urocanate hydratase; 44.8 32 0.0007 29.7 3.6 47 234-294 216-262 (556)
493 KOG4279 Serine/threonine prote 44.3 1.5E+02 0.0032 27.5 7.6 118 173-295 185-323 (1226)
494 PRK14956 DNA polymerase III su 44.3 2.2E+02 0.0048 25.0 10.2 31 260-290 251-281 (484)
495 KOG4279 Serine/threonine prote 44.2 2.7E+02 0.0059 26.0 12.0 30 44-73 201-230 (1226)
496 PRK14963 DNA polymerase III su 44.1 2.3E+02 0.005 25.1 10.3 17 199-215 208-224 (504)
497 PRK14971 DNA polymerase III su 44.1 2.5E+02 0.0055 25.6 10.1 18 234-251 260-277 (614)
498 PF01475 FUR: Ferric uptake re 43.8 61 0.0013 21.8 4.4 46 192-237 13-58 (120)
499 cd08326 CARD_CASP9 Caspase act 42.9 84 0.0018 19.7 6.3 33 93-129 44-76 (84)
500 PF14561 TPR_20: Tetratricopep 42.5 89 0.0019 19.9 7.9 28 80-107 23-50 (90)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.2e-55 Score=387.39 Aligned_cols=290 Identities=18% Similarity=0.155 Sum_probs=251.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccC--CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHH
Q 022531 3 THKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 80 (295)
Q Consensus 3 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 80 (295)
.+.++.||..+|+.+|.+|++.|++++|.++|++|... .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 35678888888999999999999999999999888876 3788889999999999999889999998888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKR--KNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 158 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (295)
+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+. +++|+..+|+.+|.
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p~~~tynsLI~ 622 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHH
Confidence 888888888888888888888888876 578888888888888888888888888888888887 88888888888888
Q ss_pred HHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChH
Q 022531 159 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK 238 (295)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 238 (295)
+|++.|++++|.+ +|.+|...+..||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|+++
T Consensus 623 ay~k~G~~deAl~-lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 623 SCSQKGDWDFALS-IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHhcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 8888888888888 888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCCC
Q 022531 239 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 295 (295)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 295 (295)
+|.++|++|.+.+. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 702 eA~~lf~eM~~~g~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 702 KALELYEDIKSIKL-RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88888888887765 688888888888888888888888888888888888887765
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-53 Score=379.83 Aligned_cols=289 Identities=15% Similarity=0.137 Sum_probs=280.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccC--CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh--CCCCCCH
Q 022531 4 HKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEELFERVKQ--SNLSFNA 79 (295)
Q Consensus 4 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~ 79 (295)
+.++.||..+|+.+|.+|++.|++++|.++|+.|... .||..+|+.||.+|++.|++++|.++|++|.. .|+.||.
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 4688999999999999999999999999999999876 58999999999999999999999999999986 6799999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 022531 80 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 159 (295)
Q Consensus 80 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (295)
.+|++||.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|... |+.||..+|++++.+
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred HHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHH
Q 022531 160 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 239 (295)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 239 (295)
|++.|++++|.+ ++..|.+.+..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 659 ~~k~G~~eeA~~-l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 659 AGHAGDLDKAFE-ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred HHhCCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCCC
Q 022531 240 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 295 (295)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 295 (295)
|.++|++|...+. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|
T Consensus 738 Alelf~eM~~~Gi-~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 738 ALEVLSEMKRLGL-CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999876 699999999999999999999999999999999999998664
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.9e-50 Score=350.85 Aligned_cols=279 Identities=13% Similarity=0.164 Sum_probs=251.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHH---
Q 022531 4 HKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL--- 80 (295)
Q Consensus 4 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--- 80 (295)
+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..+||+++.+|++.|++++|+++|++|.+.|+.|+..
T Consensus 151 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 468899999999999999999999999999999986 899999999999999999999999999998877666554
Q ss_pred --------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 81 --------------------------------MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 81 --------------------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
+||+||.+|++.|++++|.++|++|.+ +|..+|+++|.+|++.|
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g 304 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHG 304 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCC
Confidence 457778888888889999999988854 58889999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHH
Q 022531 129 NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQI 208 (295)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 208 (295)
++++|.++|++|... |+.||..+|++++.+|++.|++++|.+ ++..+.+.+..||..+|++|+.+|++.|++++|.++
T Consensus 305 ~~~eA~~lf~~M~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~-i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 305 YSEEALCLYYEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQ-AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccchHHHHH-HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 999999999999887 889999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh-cC
Q 022531 209 WKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ-KN 287 (295)
Q Consensus 209 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g 287 (295)
|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|. .||..||+.++.+|.+.|++++|.++|+.|.+ .|
T Consensus 383 f~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 383 FDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV-APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 99885 47888999999999999999999999999998876 69999999999999999999999999999976 69
Q ss_pred CCCCCCCC
Q 022531 288 CAPTNASG 295 (295)
Q Consensus 288 ~~p~~~t~ 295 (295)
+.|+..+|
T Consensus 458 ~~p~~~~y 465 (697)
T PLN03081 458 IKPRAMHY 465 (697)
T ss_pred CCCCccch
Confidence 99998776
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.1e-48 Score=346.03 Aligned_cols=284 Identities=14% Similarity=0.118 Sum_probs=247.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 022531 4 HKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYN 83 (295)
Q Consensus 4 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 83 (295)
+.++.||..+|+.||.+|++.|++++|.++|+.|+. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 357788888999999999999999999999999986 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 022531 84 EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163 (295)
Q Consensus 84 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (295)
.++.+|++.|+++.|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|.. ||..+|++++.+|++.
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-----KDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999988863 6778888889999998
Q ss_pred CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 022531 164 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI 243 (295)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 243 (295)
|++++|.+ +|.+|...+..||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++
T Consensus 368 g~~~~A~~-lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 368 GLPDKALE-TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCHHHHHH-HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888 88888888888888888888888888888888888888888888888887777777777777777777777
Q ss_pred HHHHhhhcC-----------------------------------------------------------------------
Q 022531 244 IDQWKQSAT----------------------------------------------------------------------- 252 (295)
Q Consensus 244 ~~~~~~~~~----------------------------------------------------------------------- 252 (295)
|++|.+.+.
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~ 526 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence 776643210
Q ss_pred -----------------------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCCC
Q 022531 253 -----------------------SDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 295 (295)
Q Consensus 253 -----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 295 (295)
..||..+|++||.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 0356677888888888899999999999999999999998886
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-47 Score=335.38 Aligned_cols=269 Identities=16% Similarity=0.179 Sum_probs=234.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 022531 4 HKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYN 83 (295)
Q Consensus 4 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 83 (295)
+.++.+|..+|++||++|+++|++++|.++|+.|.. +|..+||+||.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~ 329 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 456788888999999999999999999999999975 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 022531 84 EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163 (295)
Q Consensus 84 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (295)
+++.+|++.|++++|.+++.+|.+.|+.||..+|++|+++|++.|++++|.++|++|.+ ||..+|+++|.+|++.
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999998864 6888999999999999
Q ss_pred CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCCCCHHhHHHHHHHHHhcCChHHHHH
Q 022531 164 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM-TKQKMTSRNYICILSSYLMLGHLKEVGE 242 (295)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~ 242 (295)
|+.++|.+ +|++|...+..||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+
T Consensus 405 G~~~~A~~-lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 405 GRGTKAVE-MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred CCHHHHHH-HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999 999999999999999999999999999999999999999975 5888999999999999999999999998
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 243 IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
++++|. ..|+..+|++|+.+|...|+++.|..+++++.
T Consensus 484 ~~~~~~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 484 MIRRAP----FKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHCC----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 887762 24666666666666665555555555555554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-46 Score=338.06 Aligned_cols=278 Identities=14% Similarity=0.162 Sum_probs=259.4
Q ss_pred CCCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022531 5 KEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE 84 (295)
Q Consensus 5 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 84 (295)
.+..++...++.++..|++.|+++.|.++|++|++ ||..+||++|.+|++.|++++|+++|++|...|+.||..||+.
T Consensus 115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ 192 (857)
T PLN03077 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192 (857)
T ss_pred cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 45567888899999999999999999999999986 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (295)
++.+|+..++++.+.+++..|.+.|+.||..+|++++.+|++.|+++.|..+|++|.. ||..+|++++.+|++.|
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENG 267 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999874 67889999999999999
Q ss_pred chhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 022531 165 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 244 (295)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 244 (295)
+.++|.+ +|.+|...+..||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 268 ~~~eAl~-lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 268 ECLEGLE-LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CHHHHHH-HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCCC
Q 022531 245 DQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 295 (295)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 295 (295)
++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 347 ~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 347 SRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred hhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 9875 478889999999999999999999999999999999998875
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.2e-23 Score=174.56 Aligned_cols=275 Identities=12% Similarity=0.062 Sum_probs=227.9
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-----CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-----TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE 84 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 84 (295)
+..++..+...+.+.|++++|..+++.+....+ ....+..++..+.+.|++++|..+|+++.+.. +++..+++.
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 146 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ 146 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 456788899999999999999999998877532 13568888999999999999999999998764 456788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDI----FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (295)
++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|...|+++.+. .+.+...+..+...+
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 224 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHH
Confidence 999999999999999999999886543322 23556777788999999999999998874 244566788888999
Q ss_pred HhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHH
Q 022531 161 ITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 240 (295)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 240 (295)
.+.|++++|.+ .+.++....+.....+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|
T Consensus 225 ~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 225 LAQGDYAAAIE-ALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHCCCHHHHHH-HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHH
Confidence 99999999999 8888877654434567888999999999999999999998876 56666778899999999999999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHhcCCCCCCC
Q 022531 241 GEIIDQWKQSATSDFDISACNRLLGAFSD---VGLTEKANEFHMLLLQKNCAPTNA 293 (295)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ 293 (295)
.++++++.+. .|+...++.++..+.. .|+.+++..++++|.+.+++|+..
T Consensus 302 ~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 302 QALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9999998874 4788888888877764 568999999999999988888763
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.1e-22 Score=166.10 Aligned_cols=267 Identities=13% Similarity=0.015 Sum_probs=221.3
Q ss_pred HHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 022531 19 DLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---ALMYNEMMTLYMSVGQ 94 (295)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~ 94 (295)
..+...|++++|...|+.+....| +..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345678999999999999998877 677899999999999999999999999987642222 3568899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCchhhHHH
Q 022531 95 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYITASHLVNAES 171 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 171 (295)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.....+. ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998863 346788999999999999999999999999875221111 2245677888899999999999
Q ss_pred HHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 172 STLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
.+.++.+..+. +...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|.+.++++.+..
T Consensus 202 -~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 -LLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred -HHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 89888776533 4567788889999999999999999999876433234567889999999999999999999998853
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCC
Q 022531 252 TSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA 293 (295)
Q Consensus 252 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 293 (295)
|+...+..++..+.+.|++++|..+++++.+. .|+..
T Consensus 280 ---p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 280 ---PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred ---CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 56666788999999999999999999999875 46643
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=2.3e-20 Score=170.52 Aligned_cols=268 Identities=12% Similarity=0.015 Sum_probs=171.5
Q ss_pred CCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022531 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 86 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 86 (295)
+.++..|..+...+.+.|++++|...|+.+....| +...+..+..++.+.|++++|...|+++.+.. +.+..++..++
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44567778888888888888888888887776655 56677777788888888888888888777654 44566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 022531 87 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
..+...|++++|.++++.+.+.+ +++...+..+...+.+.|++++|.+.|+++... .|+..++..+..++.+.|++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCH
Confidence 77777777777777777776654 235556666667777777777777777776654 23335555666666777777
Q ss_pred hhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
++|.+ .+..+....+. +...+..+...|...|++++|.+.|+++.+.. +.+...+..+...+...|+ .+|+..+++
T Consensus 753 ~~A~~-~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVK-TLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 77766 66665554432 45566666666666677777776666666553 3344455555555555555 445555555
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 247 WKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
..+.. +.+..++..+..++...|++++|..+++++++.
T Consensus 829 ~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 829 ALKLA--PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 54432 223334444555555555555555555555543
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=5.9e-20 Score=167.85 Aligned_cols=270 Identities=13% Similarity=-0.002 Sum_probs=175.4
Q ss_pred CCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022531 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 86 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 86 (295)
+.++..+..+...+...|++++|...|+++....| +...+..++..+...|++++|.+.|+++...+ +.+..++..+.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 34566677777777777777777777777666555 55666667777777777777777777776654 34566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 022531 87 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
..+.+.|+.++|..+++++.+.+. .+...+..++..+.+.|++++|..+++.+... .+.+..+|..+..++.+.|++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCH
Confidence 777777777777777777665432 34455666666677777777777777776652 345566677777777777777
Q ss_pred hhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
++|.. .+..+.+..+ .+...+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|.++++.
T Consensus 618 ~~A~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 618 NKAVS-SFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHH-HHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777 6666655432 244556666666667777777777777666542 22345556666666666666666666666
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 247 WKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
+.+.. +++...+..+...+...|++++|...|+++.+.
T Consensus 695 ~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 695 LQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 66543 244555666666666666666666666666553
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.3e-17 Score=145.70 Aligned_cols=265 Identities=11% Similarity=-0.031 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
+..+..+...+...|++++|...|+......| +...+..++..+...|++++|...++.+.... +.+...+..+ ..+
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l 187 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSF 187 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHH
Confidence 44556666666777777777777777666555 56666667777777777777777777665543 2233333333 235
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhh-
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN- 168 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 168 (295)
.+.|++++|...++.+.+....++...+..+..++.+.|++++|...++++... .+.+...+..+...+...|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhh
Confidence 666777777777777665533333444444556677778888888888777764 24556677777888888888775
Q ss_pred ---HHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 022531 169 ---AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIID 245 (295)
Q Consensus 169 ---a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 245 (295)
|.. .++......+. +...+..+...+...|++++|+..+++..... +.+...+..+..++.+.|++++|.+.|+
T Consensus 266 ~~~A~~-~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 266 KLQAAE-HWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred HHHHHH-HHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666 67766665443 56677778888888888888888888877653 2234455667778888888888888888
Q ss_pred HHhhhcCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 246 QWKQSATSDFDI-SACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
++.... |+. ..+..+..++...|+.++|...|++..+
T Consensus 343 ~al~~~---P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 343 QLAREK---GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHhC---ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 877643 332 3344456677888888888888888766
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=2.5e-17 Score=143.98 Aligned_cols=267 Identities=9% Similarity=-0.074 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
+..+..++.+....|++++|...|+.+....| +...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l 154 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTL 154 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 44455666777789999999999999988877 67788888999999999999999999998764 44677888899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhH
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (295)
...|++++|...++++...... +...+..+ ..+.+.|++++|...++.+... ...++......+..++.+.|++++|
T Consensus 155 ~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA 231 (656)
T PRK15174 155 VLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPF-FALERQESAGLAVDTLCAVGKYQEA 231 (656)
T ss_pred HHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999988765333 22333333 3477889999999999988765 2233444555667788899999999
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHH----HHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 022531 170 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK----IDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIID 245 (295)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 245 (295)
.. .+.......+. +...+..+...+...|++++ |...|++..... +.+...+..+...+...|++++|...++
T Consensus 232 ~~-~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 232 IQ-TGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HH-HHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99 88888776543 56777888889999999885 799999887763 2345677889999999999999999999
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 246 QWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
+..... +.+...+..+..++.+.|++++|...++++.+.
T Consensus 309 ~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 309 QSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 988854 345667788899999999999999999998864
No 13
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=4.5e-19 Score=140.24 Aligned_cols=268 Identities=15% Similarity=0.101 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHHHhccChhHHHHHHhh-cccC-CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022531 8 VLSDSDYATRIDLMTKVFGIHSGERYFEG-LPLS-AK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE 84 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 84 (295)
.|+...+ .+...+.+.|++++|.++++. +... +| +...|..+.......++++.|...++++...+- -++..+..
T Consensus 6 ~~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~ 83 (280)
T PF13429_consen 6 GPSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 3443333 567888899999999999965 4444 35 677777788888889999999999999998763 35667878
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (295)
++.. ...+++++|.+++.+..+.. ++...+...+..+.+.++++++..+++.+......+++...|..+...+.+.|
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred cccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 8887 79999999999998876653 56677888889999999999999999998865455678888999999999999
Q ss_pred chhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 022531 165 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 244 (295)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 244 (295)
+.++|.+ .+++..+..+. |....+.++..+...|+.+++.++++...... +.++..+..+..+|...|+.++|+.+|
T Consensus 161 ~~~~A~~-~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 161 DPDKALR-DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp HHHHHHH-HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred CHHHHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccc
Confidence 9999999 99998887765 66778889999999999999999999887764 455567788999999999999999999
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 245 DQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
++..+.. +.|......+..++...|+.++|.++..+..+
T Consensus 238 ~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 238 EKALKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHS--TT-HHHHHHHHHHHT-----------------
T ss_pred ccccccc--cccccccccccccccccccccccccccccccc
Confidence 9998865 45888889999999999999999999887654
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=6.4e-16 Score=135.25 Aligned_cols=185 Identities=11% Similarity=-0.079 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHhCC-CCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHH
Q 022531 95 VEKVALVVEEIKRKN-VVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS 172 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (295)
+++|.+.|++..+.+ ..| ....+..+...+...|++++|+..|++.... .+.....|..+..++...|++++|..
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~- 386 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEE- 386 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHH-
Confidence 444444444444432 122 2344566666667778888888888887763 23445677788888888888888888
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcC
Q 022531 173 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 252 (295)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 252 (295)
.++......+ .+..+|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..
T Consensus 387 ~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 7777766543 356677888888888899999998888887753 2345556677888888899999999998887743
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 253 SDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 253 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
+.+...|+.+..++...|++++|...|++.++.
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345677888888899999999999999888764
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=5.9e-16 Score=135.45 Aligned_cols=255 Identities=9% Similarity=-0.040 Sum_probs=207.6
Q ss_pred ccChhHHHHHHhhcccC---CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 022531 24 VFGIHSGERYFEGLPLS---AK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 99 (295)
Q Consensus 24 ~~~~~~A~~~~~~~~~~---~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 99 (295)
.+++++|.+.|+..... .| ....|+.+...+...|++++|+..|++..+.. +-+...|..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 36789999999988764 34 56788999999999999999999999998874 334678899999999999999999
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 022531 100 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 179 (295)
Q Consensus 100 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (295)
..|++..+... .+..+|..+...+...|++++|...|++.... .+.+...+..+..++.+.|++++|.. .+.....
T Consensus 386 ~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~-~~~~al~ 461 (615)
T TIGR00990 386 EDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMA-TFRRCKK 461 (615)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHH
Confidence 99999988632 35778889999999999999999999999874 35567788889999999999999999 8888876
Q ss_pred hcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHH------hHHHHHHHHHhcCChHHHHHHHHHHhhhcCC
Q 022531 180 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR------NYICILSSYLMLGHLKEVGEIIDQWKQSATS 253 (295)
Q Consensus 180 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 253 (295)
..+. +...|+.+...+...|++++|++.|++........+.. .++.....+...|++++|.+++++..+..
T Consensus 462 ~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-- 538 (615)
T TIGR00990 462 NFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-- 538 (615)
T ss_pred hCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--
Confidence 5543 56788889999999999999999999987653221111 11222233445799999999999987753
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 254 DFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 254 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
+.+...+..+...+.+.|++++|..+|++..+.
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345667899999999999999999999998753
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=9.5e-17 Score=131.38 Aligned_cols=267 Identities=15% Similarity=0.085 Sum_probs=222.7
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 91 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 91 (295)
.|+.|...+-..|++..|+..|++.....| -...|-.|...|...+.+++|+..+.+..... +-...++..|...|..
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYye 298 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYE 298 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEec
Confidence 456677777788888888888888888777 46788888899988999999999888877653 2345677888888889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHH
Q 022531 92 VGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 170 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (295)
.|.++-|+..|++..+. +|+ ...|+.+..++-..|+..+|...|.+...- .+......+.|...|...|.+++|.
T Consensus 299 qG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHH
Confidence 99999999999998884 565 567999999999999999999999998874 4556678899999999999999999
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 171 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
. ++...++-.+. -...++.|...|-..|++++|+..|++... ++|+. ..|+.+...|-..|+.+.|.+.+.+.+.
T Consensus 375 ~-ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 375 R-LYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred H-HHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 9 88877765543 456789999999999999999999998776 46664 5688889999999999999999999887
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC
Q 022531 250 SATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 250 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 292 (295)
-+ +.-...++.|...|..+|++.+|..-++..+. ++||.
T Consensus 451 ~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 451 IN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred cC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 43 23467899999999999999999999999886 77775
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2e-15 Score=118.67 Aligned_cols=277 Identities=14% Similarity=0.149 Sum_probs=186.2
Q ss_pred CCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCC--CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022531 7 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA--KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE 84 (295)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 84 (295)
.+-++++|.++|.++|+-...+.|.+++++..... .+..+||.+|.+-.-..+ .+++.+|.+..++||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 34578999999999999999999999999887762 488999999876543322 788999999999999999999
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHH-HHHHHHHHhhc-C--CC----CCCHHH
Q 022531 85 MMTLYMSVGQVEK----VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ-VKKFLDEMSCD-S--GG----SDDWVK 152 (295)
Q Consensus 85 li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~-~--~~----~~~~~~ 152 (295)
++++.++.|+++. |.+++.+|++-|+.|...+|..+|..+.+-+++.+ +..++.++... . .+ +.+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998764 56778889999999999999999999998888754 44444444331 0 12 223344
Q ss_pred HHHHHHHHHhcCchhhHHHH-----------------------------------------HHHHHHHhcCCCccccHHH
Q 022531 153 YVNLVNIYITASHLVNAESS-----------------------------------------TLVEAEKSITQRQWITYDF 191 (295)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~ 191 (295)
+...+..|.+..+.+-|.++ .++.+.-...-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 56666777777777767662 2222222223344555566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCC---------------------------------------------------
Q 022531 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMT--------------------------------------------------- 220 (295)
Q Consensus 192 li~~~~~~g~~~~a~~~~~~m~~~~~~~~--------------------------------------------------- 220 (295)
++++....|.++-.-++|..+...|...+
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 66777777777777777777665553111
Q ss_pred ---HHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHH---HHHHHHHccCChHHHHHHHHHHHhcC
Q 022531 221 ---SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN---RLLGAFSDVGLTEKANEFHMLLLQKN 287 (295)
Q Consensus 221 ---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~~g 287 (295)
....+.+...+.|.|+.++|.++|..+.+++...|-....| -+++.-.+......|..+++-|...+
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 11233444455667777777777766644332223333333 44455555666666666666665443
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=2.9e-16 Score=128.61 Aligned_cols=269 Identities=14% Similarity=0.031 Sum_probs=172.4
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHH--------
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL-------- 80 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------- 80 (295)
-..+|..+.+.+-..|++++|+.+++.+.+..| .+..|..+..++...|+.+.|...|.+.++.+ |+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 356888899999999999999999999998877 78899999999999999999999998887764 4332
Q ss_pred ---------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHH
Q 022531 81 ---------------------------MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQ 132 (295)
Q Consensus 81 ---------------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~ 132 (295)
+|..|...+-..|+...|+..|++.... .|+ ...|-.|...|...+.+++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 2333333444445555555555555442 333 2345555555555555566
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHH
Q 022531 133 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL 212 (295)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 212 (295)
|...|.+.... -+....++..+...|-..|.+|.|.. .+++..+..+. -...|+.|..++-..|++.+|++.|.+.
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~-~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAID-TYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHH-HHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 65555555432 12334445555555555666666666 55555544332 2356777777777777777777777766
Q ss_pred HhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 022531 213 RMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 291 (295)
Q Consensus 213 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 291 (295)
.... .--....+.|...|...|.+++|..+|....+-. +--...++.|...|.+.|++++|...+++.++ ++|+
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 5542 1123345556677777777777777777666532 22345567777777777777777777777665 5554
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=1e-14 Score=135.86 Aligned_cols=269 Identities=10% Similarity=-0.040 Sum_probs=213.3
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 91 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 91 (295)
.+..+...+...|++++|.+.|++.....| +...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+..
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 355567778889999999999999998878 67888999999999999999999999998754 4466667667777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChH---------hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 022531 92 VGQVEKVALVVEEIKRKNVVPDIF---------TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 162 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (295)
.++.++|+..++.+......++.. .+..+...+...|++++|..+++. .+++...+..+...+.+
T Consensus 542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHH
Confidence 999999999998875443332221 123456678899999999999872 24566677889999999
Q ss_pred cCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHH
Q 022531 163 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGE 242 (295)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 242 (295)
.|++++|.. .+.......+. +...+..++..|...|+.++|++.++.+.... +.+......+..++...|++++|.+
T Consensus 616 ~g~~~~A~~-~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 616 RGDYAAARA-AYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred cCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999 89888876544 67788999999999999999999999887642 2234456668888999999999999
Q ss_pred HHHHHhhhcCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHh-cCCCCC
Q 022531 243 IIDQWKQSATSDF----DISACNRLLGAFSDVGLTEKANEFHMLLLQ-KNCAPT 291 (295)
Q Consensus 243 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~p~ 291 (295)
+++.+.......| +...+..+...+...|+.++|...|++.+. .|+.|+
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 9999887532212 234666678889999999999999998863 456554
No 20
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=3.9e-14 Score=117.23 Aligned_cols=260 Identities=10% Similarity=0.047 Sum_probs=196.9
Q ss_pred HHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHH--HHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 022531 14 YATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYT--ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 91 (295)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 91 (295)
|-....+..+.|+++.|...|.++.+..|+..... .....+...|+++.|...++++.+.. |-++.....+...|.+
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 33334555788999999999998888777654333 33567888899999999999988875 4567788888889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCh-------HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 022531 92 VGQVEKVALVVEEIKRKNVVPDI-------FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (295)
.|+|++|.+++..+.+.+..++. .+|..++.......+.+...++++..... .+.++.....+...+...|
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCC
Confidence 99999999999998887654322 13333444444445566666677766553 3567778889999999999
Q ss_pred chhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 022531 165 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 244 (295)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 244 (295)
+.++|.+ .+.+..+.. ++.. -.++.+....++.+++.+..+...+.. +-|...+..+.+.|.+.+++++|.+.|
T Consensus 278 ~~~~A~~-~L~~~l~~~--~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 278 DHDTAQQ-IILDGLKRQ--YDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred CHHHHHH-HHHHHHhcC--CCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999 777776633 3331 123344446699999999999988763 334455778999999999999999999
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 245 DQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+...+. .|+...|..+..++.+.|+.++|.+++++...
T Consensus 352 e~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 352 RAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999874 48888888999999999999999999998765
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=3.9e-14 Score=131.97 Aligned_cols=261 Identities=10% Similarity=0.022 Sum_probs=184.9
Q ss_pred HHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH----------
Q 022531 18 IDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM---------- 86 (295)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li---------- 86 (295)
...+.+.|++++|...|+++....| +...+..+...+...|++++|++.|++..+.. +.+...+..+.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHH
Confidence 4466788999999999999888776 67788888899999999999999999888754 23343433332
Q ss_pred --------------------------------HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHH
Q 022531 87 --------------------------------TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK 134 (295)
Q Consensus 87 --------------------------------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 134 (295)
..+...|++++|++.|++..+.... +...+..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 3344678888888888888775322 4566777888888889999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHH-----------------------------------
Q 022531 135 KFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK----------------------------------- 179 (295)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------------- 179 (295)
..++++... .+.+...+..+...+...++.++|.. .++.+..
T Consensus 516 ~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~-~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 516 ALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALA-HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHH-HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 998888764 22333333333333344444444444 3222100
Q ss_pred ----hcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCC
Q 022531 180 ----SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 255 (295)
Q Consensus 180 ----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 255 (295)
...+.+...+..+...+.+.|+.++|++.|++..... +.+...+..++..|...|+.++|.+.++...+.. +.
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~ 669 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--ND 669 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CC
Confidence 0122344566677788888999999999999888763 3356677788899999999999999999877643 34
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 256 DISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
+..++..+..++...|++++|.+++++++..
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 5566777888888999999999999998764
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=5.5e-14 Score=126.54 Aligned_cols=264 Identities=7% Similarity=-0.131 Sum_probs=169.3
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
+...|..+..++.. ++.++|...|.......|+......+...+...|++++|...|+++... +|+...+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 45556666666665 6777777777666666665444444445556777788888887776544 34455566666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhH
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (295)
.+.|++++|...|++..+.+. ++...+..+.....+.|++++|...+++..+. .|+...+..+..++.+.|+.++|
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHH
Confidence 777788888887777776531 12222333333344557788888877777754 24566777777777788888888
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 170 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
.. .+.......+. +...++.+..++...|+.++|+..+++..+.. +-+...+..+..++...|++++|+..|++..+
T Consensus 629 ~~-~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 629 VS-DLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HH-HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77 77776665543 55666777777777788888888777776653 22345566677777778888888887777776
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 250 SATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 250 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.. +-+..+.........+..+++.|.+-+++...
T Consensus 706 l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 706 DI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred cC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 33 22334444455555566666666665555443
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=3.2e-15 Score=123.25 Aligned_cols=257 Identities=16% Similarity=0.101 Sum_probs=201.5
Q ss_pred ChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC------------------------------
Q 022531 26 GIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSN------------------------------ 74 (295)
Q Consensus 26 ~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------------------------ 74 (295)
+..+|...|..++.+.+ +..+...+..+|...+++++|.++|+.+.+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 35677777777666655 34556667777777888888888887775532
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH
Q 022531 75 ---LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW 150 (295)
Q Consensus 75 ---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (295)
-+-.+.+|-++.++|.-.++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+....- .+-+-
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhY 489 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHY 489 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cchhh
Confidence 0126789999999999999999999999999885 45 6788998888899999999999999998853 22344
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHH
Q 022531 151 VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSS 230 (295)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 230 (295)
.+|.-+...|.+.++++.|+- .|++..+-.+. +.+....+...+-+.|+.++|++++++......+ |+..--.-+..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~-~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEF-HFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred HHHHhhhhheeccchhhHHHH-HHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 456667888999999999999 88888776654 6677777788889999999999999998766432 33333345666
Q ss_pred HHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 022531 231 YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 291 (295)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 291 (295)
+...++.++|++.++++++ ..+.+...|..+...|.+.|+.+.|+.-|..+.+.+-++.
T Consensus 567 l~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 7778999999999999998 4445677899999999999999999999998887554443
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.5e-14 Score=112.61 Aligned_cols=240 Identities=15% Similarity=0.106 Sum_probs=193.5
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 022531 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 121 (295)
Q Consensus 42 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 121 (295)
.+..+|.+||.++|+-...+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|....+.||..|||+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 3788999999999999999999999999998888899999999998765433 378899999999999999999999
Q ss_pred HHHHccCCHHH----HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhh-HHHHHHHHHHHhc----CCC----cccc
Q 022531 122 SSCAATLNIDQ----VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN-AESSTLVEAEKSI----TQR----QWIT 188 (295)
Q Consensus 122 ~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~----~~~----~~~~ 188 (295)
++.++.|+++. |.+++.+|++- |+.|+..+|..+|..+++.++..+ +.. +..++.... .+| |...
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKei-GVePsLsSyh~iik~f~re~dp~k~as~-~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQKVASS-WINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHh-CCCcchhhHHHHHHHhcccCCchhhhHH-HHHHHHHhhccCcccCCCCchhHH
Confidence 99999998765 45778889988 999999999999999999988755 344 555554422 222 3344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcc----CCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHH
Q 022531 189 YDFLIILYAGLGNKDKIDQIWKSLRMTK----QKMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 261 (295)
Q Consensus 189 ~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 261 (295)
|..-+..|.+..+.+-|.++-..+.... +.|+. .-|..+..+.|+....+.-...|+.|...-. -|+..+..
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y-~p~~~~m~ 437 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY-FPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee-cCCchhHH
Confidence 5566677888888888888877654321 23332 1245688888999999999999999988755 48888899
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCC
Q 022531 262 RLLGAFSDVGLTEKANEFHMLLLQKNC 288 (295)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~~~m~~~g~ 288 (295)
.++++....|.++-..++|.++++.|-
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 999999999999999999999988773
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.69 E-value=5.7e-13 Score=119.18 Aligned_cols=274 Identities=10% Similarity=-0.046 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
+..+..+...+...|++++|...++.+....| +.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l 160 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44455555666666666666666666665555 444 6666666666666666666666666553 23344444444444
Q ss_pred HhcCCHHHHHHHH----------------------------------------------HHHHhC-CCCCChH-hHH---
Q 022531 90 MSVGQVEKVALVV----------------------------------------------EEIKRK-NVVPDIF-TYN--- 118 (295)
Q Consensus 90 ~~~~~~~~a~~~~----------------------------------------------~~m~~~-~~~p~~~-~~~--- 118 (295)
...+..++|++.+ +.+.+. ...|+.. .+.
T Consensus 161 ~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 161 RNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred HHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 4444444333222 222221 1111111 010
Q ss_pred -HHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC---ccccHHHHHH
Q 022531 119 -LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR---QWITYDFLII 194 (295)
Q Consensus 119 -~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~ 194 (295)
..+..+...|++++|+..|+.+.+.....|+. ....+..+|...|++++|.. .++.+....+.. .......+..
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~-~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS-ILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH-HHHHHhhcCCCCCCCChHHHHHHHH
Confidence 00223445577777888888777652111222 12224667778888888888 777765533221 1223445566
Q ss_pred HHHhcCCHHHHHHHHHHHHhccC-----------CCCH---HhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHH
Q 022531 195 LYAGLGNKDKIDQIWKSLRMTKQ-----------KMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC 260 (295)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~~~-----------~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 260 (295)
++...|++++|.++++.+..... .|+. ..+..+...+...|+.++|+++++++.... +.+...+
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~ 396 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLR 396 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 67788888888888887765421 1221 233456667777888888888888877654 3456677
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCCCCC
Q 022531 261 NRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 261 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 292 (295)
..+...+...|++++|++.+++.++ ..|+.
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~ 426 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEV--LEPRN 426 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh--hCCCC
Confidence 7788888888888888888887776 44654
No 26
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=4.5e-13 Score=111.51 Aligned_cols=272 Identities=10% Similarity=0.025 Sum_probs=196.4
Q ss_pred CCCHHH-HHHHHHHHHhccChhHHHHHHhhcccCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022531 8 VLSDSD-YATRIDLMTKVFGIHSGERYFEGLPLSAKTS--ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE 84 (295)
Q Consensus 8 ~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 84 (295)
.|++.. +-....+..+.|+.+.|.+.|....+..|+. ...-.....+...|+++.|.+.++.+.+.. |-++.+...
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~l 192 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKL 192 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 454433 3445677788899999999999987766654 344445888888999999999999999886 457778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHH-HHHHHH---HccCCHHHHHHHHHHHhhcC--CCCCCHHHHHHHHH
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN-LWISSC---AATLNIDQVKKFLDEMSCDS--GGSDDWVKYVNLVN 158 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~---~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~ 158 (295)
+...+.+.|++++|.+++..+.+.++. +...+. .-..++ ...+..+++.+.+..+.... ..+.+...+..+..
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~ 271 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAE 271 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH
Confidence 999999999999999999999988754 333332 111221 23333344444555555431 11247888899999
Q ss_pred HHHhcCchhhHHHHHHHHHHHhcCCCccccH-HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHH---hHHHHHHHHHhc
Q 022531 159 IYITASHLVNAESSTLVEAEKSITQRQWITY-DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR---NYICILSSYLML 234 (295)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~ 234 (295)
.+...|+.++|.+ .+++..+..+......+ ..........++.+.+.+.++...+. .|+.. ...++...+.+.
T Consensus 272 ~l~~~g~~~~A~~-~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 272 HLIDCDDHDSAQE-IIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred HHHHCCChHHHHH-HHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHc
Confidence 9999999999999 88888776654322211 11222233457888899998887765 45444 455789999999
Q ss_pred CChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 235 GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
|++++|.+.|+....... .|+...+..+...+.+.|+.++|.+++++...
T Consensus 349 ~~~~~A~~~le~a~a~~~-~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKE-QLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ccHHHHHHHHHHhHHhhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999995333223 48888888999999999999999999998643
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.67 E-value=1.5e-12 Score=117.51 Aligned_cols=235 Identities=11% Similarity=-0.004 Sum_probs=189.7
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
+...|..+..++.. +++++|...+.+..... |+......+...+...|++++|...|+++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56788888888877 88899999888887764 66555445555667899999999999998664 445555667778
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCH
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 202 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 202 (295)
.+.+.|++++|...+++..+. . ++....+..+.....+.|++++|.. .+.+.....+ +...|..+...+.+.|+.
T Consensus 551 all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~-~~~~AL~l~P--~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALN-DLTRSLNIAP--SANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHhCC--CHHHHHHHHHHHHHCCCH
Confidence 889999999999999999875 2 4444445555555566799999999 8888877654 467888999999999999
Q ss_pred HHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 022531 203 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 282 (295)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (295)
++|+..+++..... +-+...+..+..++...|+.++|++.+++..+.. +-+...+..+..++...|++++|...+++
T Consensus 626 deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 626 PAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988874 3345566778889999999999999999998854 45778899999999999999999999999
Q ss_pred HHhcCCCCCC
Q 022531 283 LLQKNCAPTN 292 (295)
Q Consensus 283 m~~~g~~p~~ 292 (295)
..+ ..|+.
T Consensus 703 Al~--l~P~~ 710 (987)
T PRK09782 703 VID--DIDNQ 710 (987)
T ss_pred HHh--cCCCC
Confidence 987 44654
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.66 E-value=1.8e-12 Score=116.00 Aligned_cols=274 Identities=9% Similarity=-0.019 Sum_probs=178.9
Q ss_pred CCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 022531 7 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM 85 (295)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 85 (295)
-..++.-..-.+......|+.++|++++.......| +...+..+..++...|++++|..+|++..+.. +.+...+..+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345555666667777777777777777777765333 55567777777777777777777777777653 4456666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCc
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (295)
...+...|++++|+..+++..+.. +.+.. +..+..++...|++++|+..++++.+. .+.+...+..+..++...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 777777777777777777777652 22344 666677777777777777777777763 23444455555555555555
Q ss_pred hhhHHHH---------------------------------------------HHHHHHHh-cCCCcccc-HH----HHHH
Q 022531 166 LVNAESS---------------------------------------------TLVEAEKS-ITQRQWIT-YD----FLII 194 (295)
Q Consensus 166 ~~~a~~~---------------------------------------------~~~~~~~~-~~~~~~~~-~~----~li~ 194 (295)
.+.|... .++.+... ...|+... +. ..+.
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 5544430 33333322 11222211 11 1123
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCC--CHHHHHHHHHHHHccC
Q 022531 195 LYAGLGNKDKIDQIWKSLRMTKQK-MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF--DISACNRLLGAFSDVG 271 (295)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 271 (295)
++...|++++|+..|+.+...+.. |+. ....+..+|...|++++|++.|+++.+.....+ ....+..+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 445779999999999999887532 322 222357789999999999999999876432111 1345666777889999
Q ss_pred ChHHHHHHHHHHHhc
Q 022531 272 LTEKANEFHMLLLQK 286 (295)
Q Consensus 272 ~~~~a~~~~~~m~~~ 286 (295)
++++|..+++++.+.
T Consensus 325 ~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 325 NYPGALTVTAHTINN 339 (765)
T ss_pred cHHHHHHHHHHHhhc
Confidence 999999999999864
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=2.5e-15 Score=118.89 Aligned_cols=233 Identities=15% Similarity=0.084 Sum_probs=113.0
Q ss_pred CCHHHH-HHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022531 9 LSDSDY-ATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 86 (295)
Q Consensus 9 ~~~~~~-~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 86 (295)
|+...| ..+...+...++++.|...++.+...++ +...+..++.. ...+++++|.+++++..+.. +++..+..++
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l 117 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSAL 117 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc--cccchhhHHH
Confidence 444444 4455566678999999999999988766 67778888888 79999999999998876653 5777888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCc
Q 022531 87 TLYMSVGQVEKVALVVEEIKRKN-VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 165 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (295)
..+.+.++++++..+++.+.... .+++...|..+...+.+.|++++|+..+++..+. .|.+..+...++..+...|+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999987643 3457778888999999999999999999999985 34568888899999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 022531 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIID 245 (295)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 245 (295)
.+++.+ ++....... +.|...+..+..+|...|+.++|..+|++..... +.|+.....+..++...|+.++|.++.+
T Consensus 196 ~~~~~~-~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 196 YDEARE-ALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHH-HHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred hHHHHH-HHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 999888 777766655 4466778899999999999999999999988763 4467777889999999999999999988
Q ss_pred HHhh
Q 022531 246 QWKQ 249 (295)
Q Consensus 246 ~~~~ 249 (295)
+..+
T Consensus 273 ~~~~ 276 (280)
T PF13429_consen 273 QALR 276 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 7654
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=99.65 E-value=3.5e-13 Score=116.25 Aligned_cols=266 Identities=9% Similarity=-0.017 Sum_probs=190.9
Q ss_pred CHHHHHHHHHHHHh-----ccChhHHHHHHhhcccCCC-CHHHHHHHHHHHH---------ccCcHHHHHHHHHHHHhCC
Q 022531 10 SDSDYATRIDLMTK-----VFGIHSGERYFEGLPLSAK-TSETYTALLHLYA---------GAKWTEKAEELFERVKQSN 74 (295)
Q Consensus 10 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~~ 74 (295)
+...|...+.+-.. .+.+++|...|++..+..| +...|..+..++. ..+++++|...+++..+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 34455555555322 2347899999999998888 5667777766544 2345899999999999886
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHH
Q 022531 75 LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 154 (295)
Q Consensus 75 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (295)
+-+..++..+...+...|++++|...|++..+.+. .+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~ 410 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGI 410 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHH
Confidence 55788899999999999999999999999998642 246678888889999999999999999998752 22333333
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHh-HHHHHHHHHh
Q 022531 155 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN-YICILSSYLM 233 (295)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~ 233 (295)
.++..+...|++++|.. .+.+.....++.+...+..+..++...|+.++|...+.++... .|+... .+.+...|+.
T Consensus 411 ~~~~~~~~~g~~eeA~~-~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 411 TKLWITYYHTGIDDAIR-LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHhccCHHHHHH-HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 44555677899999999 8887766543334455777888889999999999999987654 444433 4455666777
Q ss_pred cCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 022531 234 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN 287 (295)
Q Consensus 234 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 287 (295)
.| +.|...++.+.+.....+....+ +-..+.-.|+-+.+..+ +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47888888776643333433333 34445666777666655 7777654
No 31
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=4e-12 Score=99.42 Aligned_cols=269 Identities=11% Similarity=0.052 Sum_probs=215.4
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccC--CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
.|-.-.++..+.|+.+.|-.++.+..+. .++...+-+..+.....|+.+.|..-+.++.+.+ +-++........+|.
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~ 198 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYI 198 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence 4666677778889999999999998887 3567778888888899999999999999988876 456788899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCh-------HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDI-------FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (295)
+.|++.....++.+|.+.|.-.+. .+|..+++-....+..+.-...++....+ .+.++..-.+++.-+.++
T Consensus 199 ~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 199 RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK--LRNDPELVVAYAERLIRL 276 (400)
T ss_pred HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH--hhcChhHHHHHHHHHHHc
Confidence 999999999999999998875554 46788888877777777777777777663 455666777999999999
Q ss_pred CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 022531 164 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI 243 (295)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 243 (295)
|+.++|.+ +..+..+....|+ -...-.+.+.++.+.-++..++-.+.. +-++-.+..|...|.+.+.+.+|...
T Consensus 277 ~~~~~A~~-~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 277 GDHDEAQE-IIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred CChHHHHH-HHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999 7777777776655 122234567788777777776654432 23345677899999999999999999
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCC
Q 022531 244 IDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA 293 (295)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 293 (295)
|+...+. .|+..+|+.+.+++.+.|+..+|.++.++....-.+|+..
T Consensus 351 leaAl~~---~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~ 397 (400)
T COG3071 351 LEAALKL---RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNLP 397 (400)
T ss_pred HHHHHhc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCc
Confidence 9987763 5899999999999999999999999999988766666643
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.2e-13 Score=106.12 Aligned_cols=266 Identities=13% Similarity=0.064 Sum_probs=189.4
Q ss_pred CCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC----CHHHHHHHHHHHHccCcHH-HHHHHHHHHHhCCCCCCHH
Q 022531 6 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK----TSETYTALLHLYAGAKWTE-KAEELFERVKQSNLSFNAL 80 (295)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~ 80 (295)
|++.+...-+....+.-...++|.|+.+|+++..+.| |..+|+.++-.--.+.++. .|..+++ +-+ -.+.
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-idK----yR~E 331 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-IDK----YRPE 331 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hcc----CCcc
Confidence 4555555444455555567788999999998888865 6778877766543333322 2222221 111 2356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (295)
|...+.+.|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-++.+.+ -.|-|-.+|-.+.++|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAY 408 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHH
Confidence 6777778888888899999999988886432 456788888889999999999999999887 4577888888999999
Q ss_pred HhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHH
Q 022531 161 ITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 240 (295)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 240 (295)
.-.+...-|+- ++++...-.+. |...|.+|..+|.+.++.++|+..|......| +.+...+..|.+.|-+.++..+|
T Consensus 409 eim~Mh~YaLy-YfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALY-YFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHH-HHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 99988888888 77777665543 78889999999999999999999999888776 44667888899999999999999
Q ss_pred HHHHHHHhhh----cCCCC-CHHHHHHHHHHHHccCChHHHHHHHHH
Q 022531 241 GEIIDQWKQS----ATSDF-DISACNRLLGAFSDVGLTEKANEFHML 282 (295)
Q Consensus 241 ~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (295)
.+.|....+. |...| ......-|..-+.+.+++++|..+...
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 8888876652 22223 122222245556666777666654443
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=4.8e-13 Score=111.33 Aligned_cols=272 Identities=9% Similarity=-0.042 Sum_probs=192.7
Q ss_pred HHHHHHH--HhccChhHHHHHHhhcccCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHH
Q 022531 15 ATRIDLM--TKVFGIHSGERYFEGLPLSAKTS-ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA--LMYNEMMTLY 89 (295)
Q Consensus 15 ~~li~~~--~~~~~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~ 89 (295)
..+.++. ...|+++.|.+.+....+..|+. ..+-....+..+.|+.+.|.+.+.+..+.. |+. ...-.....+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHH
Confidence 3344444 35799999999999888877754 444555678888999999999999987653 444 3444458888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH---HHHhcCch
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN---IYITASHL 166 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~ 166 (295)
...|++++|...++.+.+.... +......+...+...|++++|.+.+....+. +..+.......-.. .....+..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997532 6678889999999999999999999999986 43322222111111 11233333
Q ss_pred hhHHHHHHHHHHHhcCC---CccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhH---HHHHHHHHhcCChHHH
Q 022531 167 VNAESSTLVEAEKSITQ---RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY---ICILSSYLMLGHLKEV 240 (295)
Q Consensus 167 ~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~~~~~~A 240 (295)
+.+.+ .+..+....+. .+...+..+...+...|+.++|.+++++..+. .|+.... ..........++.+.+
T Consensus 242 ~~~~~-~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 242 DEGID-GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred hcCHH-HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHH
Confidence 33344 44445454442 36778888999999999999999999999886 3444321 1122223445788889
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCC
Q 022531 241 GEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA 293 (295)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 293 (295)
.+.++...+.....|+.....++...|.+.|++++|.++|+........||..
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 99998888764322322567789999999999999999999655444566643
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=7.3e-13 Score=109.72 Aligned_cols=257 Identities=11% Similarity=-0.003 Sum_probs=189.7
Q ss_pred ccChhHHHHHHhhcccCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 022531 24 VFGIHSGERYFEGLPLSAKTSETYTAL-LHLYAGAKWTEKAEELFERVKQSNLSFNALMYN--EMMTLYMSVGQVEKVAL 100 (295)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~ 100 (295)
.|+++.|.+.+....+..+++..+..+ ..+..+.|+++.|.+.+.++.+. .|+..... .....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 599999999988876654444444444 45558899999999999999875 35654333 33668899999999999
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHhcCchhhHHHHHH
Q 022531 101 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW------VKYVNLVNIYITASHLVNAESSTL 174 (295)
Q Consensus 101 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~ 174 (295)
.++++.+.... +......+...|.+.|++++|.+++..+.+.....+.. .+|..++.......+.+...+ ++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~-~w 252 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR-WW 252 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HH
Confidence 99999987533 67788899999999999999999999999873332221 123333333334444444444 44
Q ss_pred HHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCC
Q 022531 175 VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 254 (295)
Q Consensus 175 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 254 (295)
+.+-... +.+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+.. +
T Consensus 253 ~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P 325 (398)
T PRK10747 253 KNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--G 325 (398)
T ss_pred HhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--C
Confidence 4443322 346677888899999999999999999988774 555532 23444456699999999999998865 3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCC
Q 022531 255 FDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA 293 (295)
Q Consensus 255 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 293 (295)
-|...+..+...|.+.|++++|.+.|+.+.+ ..|+..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~ 362 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAY 362 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHH
Confidence 4667788899999999999999999999997 456643
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=8.2e-13 Score=101.58 Aligned_cols=202 Identities=15% Similarity=0.035 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 46778888999999999999999999988764 44577888899999999999999999999887643 35567777888
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCH
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 202 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 202 (295)
.+...|++++|.+.+++.......+.....+..+..++...|++++|.. .+.+.....+. +...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK-YLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 8999999999999999988753333445667778888999999999999 88887765543 456778888889999999
Q ss_pred HHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 203 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
++|.+.+++.... .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988776 244566677788888899999999998887765
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=1.3e-12 Score=100.45 Aligned_cols=203 Identities=9% Similarity=0.059 Sum_probs=164.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 022531 76 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 155 (295)
Q Consensus 76 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 155 (295)
......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++.... .+.+...+..
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~ 104 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNN 104 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHH
Confidence 3446778889999999999999999999988753 234677888888899999999999999998874 3456677888
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHhcCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhc
Q 022531 156 LVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 234 (295)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 234 (295)
+...+...|++++|.+ .+.........+ ....+..+...+...|++++|...+++..... +.+...+..+...+...
T Consensus 105 ~~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQ-QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHHHHcccHHHHHH-HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHc
Confidence 8999999999999999 888877643222 34466777888899999999999999887763 23456777888999999
Q ss_pred CChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 235 GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
|++++|.+.+++..+.. +.+...+..+...+...|+.++|..+.+.+..
T Consensus 183 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 183 GQYKDARAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999988753 35667777888888999999999999888765
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=2.8e-12 Score=97.66 Aligned_cols=223 Identities=13% Similarity=0.095 Sum_probs=140.1
Q ss_pred ccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 022531 24 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQS-NLSFN--ALMYNEMMTLYMSVGQVEKVA 99 (295)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~--~~~~~~li~~~~~~~~~~~a~ 99 (295)
+++.++|.+.|-+|.+..| +..+--+|.+.|-+.|.++.|+++...+.+. +++-+ ..+...|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4667777777777776655 5666677777777777777777777776654 21111 123345556677777777777
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHhcCchhhHHHHHHHH
Q 022531 100 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW---VKYVNLVNIYITASHLVNAESSTLVE 176 (295)
Q Consensus 100 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (295)
.+|..+.+.|. .-......|+..|-...+|++|+++-+++.+.++-+.+. ..|--+...+....+.+.|.. ++.+
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~-~l~k 205 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE-LLKK 205 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH-HHHH
Confidence 77777776532 234556667777777777777777777666653222222 123344444455566677777 6666
Q ss_pred HHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 177 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 177 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
..+..++ ++..--.+...+...|+++.|.+.++...+.+...-+.+...|..+|...|+.++...++..+.+
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5554433 33344445566667777777777777777665544455566677777777777777766666554
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.61 E-value=1.5e-11 Score=108.97 Aligned_cols=261 Identities=10% Similarity=-0.012 Sum_probs=154.6
Q ss_pred HHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 022531 18 IDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 96 (295)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 96 (295)
...+...|++++|.++|+.+.+..| +...+..++..+...++.++|++.++++.... |+...+..++..+...++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHH
Confidence 5577777888888888888888877 66777777888888888888888888887764 55555544444444455555
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHH-------------------------------------------------------
Q 022531 97 KVALVVEEIKRKNVVPDIFTYNLWI------------------------------------------------------- 121 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~~~~~~~li------------------------------------------------------- 121 (295)
+|++.++++.+.... +...+..+.
T Consensus 187 ~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 577777776654211 122222222
Q ss_pred ----------------------------------HHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 122 ----------------------------------SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 122 ----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
-++...+++.++++.|+.+... +.+....+-.++.++|...++.+
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-GYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHhcCCcH
Confidence 2233344555555555555554 33322334456666666666666
Q ss_pred hHHHHHHHHHHHhcC-----CCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccC-----------CCCH---HhHHHHH
Q 022531 168 NAESSTLVEAEKSIT-----QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-----------KMTS---RNYICIL 228 (295)
Q Consensus 168 ~a~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~~~~---~~~~~li 228 (295)
+|.. ++..+..... .++......|.-+|...+++++|..+++.+.+.-. .||+ ..+..++
T Consensus 345 kA~~-l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 345 KAAP-ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHH-HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 6666 6665544321 11222234566666667777777777766655210 1111 1123355
Q ss_pred HHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 229 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
..+.-.|++.+|++.++.+.... +-|......+.+.+...|.+.+|...++....
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 56666677777777777766644 34666666666777777777777777755543
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.61 E-value=1.1e-11 Score=109.72 Aligned_cols=265 Identities=12% Similarity=0.022 Sum_probs=186.7
Q ss_pred HHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 022531 16 TRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 94 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 94 (295)
.++..+...|+.++|+.++++.....| .......+...+...|++++|+++|+++.+.. +-++..+..++..+...++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCC
Confidence 777777788888888888888773211 33333444667778888888888888888775 4456777777888888888
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHH--
Q 022531 95 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS-- 172 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-- 172 (295)
.++|++.++++... .|+...+..++..+...++..+|++.++++.+. .|.+...+..+..+..+.|-...|.++
T Consensus 152 ~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 152 GGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred HHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 88888888888775 455555544444444455665688888888875 345566666677777666655544442
Q ss_pred ---------------------------------------------HHHHHHHhc-CCCccc-cH----HHHHHHHHhcCC
Q 022531 173 ---------------------------------------------TLVEAEKSI-TQRQWI-TY----DFLIILYAGLGN 201 (295)
Q Consensus 173 ---------------------------------------------~~~~~~~~~-~~~~~~-~~----~~li~~~~~~g~ 201 (295)
-++.+.... ..|... .| .-.+-++...|+
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 111111111 112111 11 123446778899
Q ss_pred HHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcC----CCCCHHHHHHHHHHHHccCChHHHH
Q 022531 202 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT----SDFDISACNRLLGAFSDVGLTEKAN 277 (295)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~ 277 (295)
+.++++.|+.|...+.+....+-..+..+|...+++++|..+|+++..... ..++......|..+|...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 999999999999888766667778899999999999999999999866431 1234444678999999999999999
Q ss_pred HHHHHHHh
Q 022531 278 EFHMLLLQ 285 (295)
Q Consensus 278 ~~~~~m~~ 285 (295)
.+++++.+
T Consensus 388 ~~l~~~~~ 395 (822)
T PRK14574 388 QFAVNYSE 395 (822)
T ss_pred HHHHHHHh
Confidence 99999987
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.4e-11 Score=93.89 Aligned_cols=267 Identities=12% Similarity=0.097 Sum_probs=208.2
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCC-----CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAK-----TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT 87 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 87 (295)
+.-+|.+.|.+.|.+|.|+++...+.+++. -....-.|..-|...|-+|.|..+|..+.+.+ ..-......|+.
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~ 149 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLN 149 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHH
Confidence 444688999999999999999999887621 24456678888999999999999999999876 234667889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh----HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 022531 88 LYMSVGQVEKVALVVEEIKRKNVVPDI----FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163 (295)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (295)
.|-...+|++|+.+-+++.+.+-++.. ..|.-+...+....+.+.|...+++..+. .+.++.+--.+.+.+...
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAK 227 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhc
Confidence 999999999999999999887655442 34666677777788999999999998875 234455555677889999
Q ss_pred CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 022531 164 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI 243 (295)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 243 (295)
|+++.|.+ .++.+.+..+.--..+...|..+|...|+.++...++..+.+... +...-..+.+.-....-.+.|...
T Consensus 228 g~y~~AV~-~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 228 GDYQKAVE-ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred cchHHHHH-HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHH
Confidence 99999999 999988887766667788899999999999999999999887643 444444555555555666777777
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHhcCC
Q 022531 244 IDQWKQSATSDFDISACNRLLGAFSD---VGLTEKANEFHMLLLQKNC 288 (295)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~ 288 (295)
+.+-... +|+...+..++..-.. .|...+-+..++.|....+
T Consensus 305 l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 305 LTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 6665553 5899999999987654 3456777778888875433
No 41
>PF13041 PPR_2: PPR repeat family
Probab=99.58 E-value=7e-15 Score=83.54 Aligned_cols=49 Identities=27% Similarity=0.587 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 022531 77 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 125 (295)
Q Consensus 77 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 125 (295)
||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=2.2e-13 Score=115.89 Aligned_cols=256 Identities=13% Similarity=0.090 Sum_probs=152.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCC-C-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHH
Q 022531 3 THKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-K-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 80 (295)
Q Consensus 3 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 80 (295)
+..|+.|+..||..+|..||..|+++.|- +|.-|.-.. | +...++.++.+..++++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 35678888999999999999999999888 888777652 4 7888999998888888866655 57788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (295)
||..|..+|.+.||+.. ++..++ -.-.+...+...|--..-..++..+...++..|+.. ..+.-.
T Consensus 85 tyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illl 149 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLL 149 (1088)
T ss_pred HHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHH
Confidence 99999999999988765 222222 122233344444544444455544444434444443 233334
Q ss_pred HhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHH
Q 022531 161 ITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 240 (295)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 240 (295)
.-.|.++.+.+ ++..+-.... + .++..+++-+... ....+++....+...-.|++.+|..++.+-..+|+++.|
T Consensus 150 v~eglwaqllk-ll~~~Pvsa~--~-~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 150 VLEGLWAQLLK-LLAKVPVSAW--N-APFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHH-HHhhCCcccc--c-chHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhH
Confidence 44455555555 2221100000 0 0111112222221 222223332222221147777777777777777777777
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCCC
Q 022531 241 GEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 295 (295)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 295 (295)
..++.+|++.|.+ .+..-|..|+-+ .++..-+..+++-|.+.|+.|++.|+
T Consensus 224 k~ll~emke~gfp-ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFP-IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred HHHHHHHHHcCCC-cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 7777777777653 444444455433 66777777777777777777777774
No 43
>PF13041 PPR_2: PPR repeat family
Probab=99.56 E-value=1.3e-14 Score=82.38 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 022531 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 91 (295)
Q Consensus 42 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 91 (295)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=9.9e-12 Score=107.35 Aligned_cols=232 Identities=10% Similarity=-0.060 Sum_probs=173.0
Q ss_pred CHHHHHHHHHHHHc-----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhC
Q 022531 43 TSETYTALLHLYAG-----AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS---------VGQVEKVALVVEEIKRK 108 (295)
Q Consensus 43 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~ 108 (295)
+...|...+.+-.. .+.+++|..+|++..+.+ +-+...|..+..+|.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 56666666665321 245789999999999875 3345677766665542 34589999999999986
Q ss_pred CCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCcccc
Q 022531 109 NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT 188 (295)
Q Consensus 109 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (295)
+.. +..++..+...+...|++++|...|+++.+. .+.+..++..+..++...|++++|.. .+++.....+. +...
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~-~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQ-TINECLKLDPT-RAAA 408 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCC-Chhh
Confidence 432 6777888888889999999999999999985 35567788889999999999999999 89888776654 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 022531 189 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF 267 (295)
Q Consensus 189 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (295)
+..++..+...|++++|+..++++.... .| ++..+..+..++...|+.++|.+.+.++.... +.+....+.+...|
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~ 485 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHH
Confidence 3444555667899999999999887653 34 34446678888899999999999999876643 23445566667777
Q ss_pred HccCChHHHHHHHHHHHh
Q 022531 268 SDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 268 ~~~g~~~~a~~~~~~m~~ 285 (295)
...| ++|...++++.+
T Consensus 486 ~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 486 CQNS--ERALPTIREFLE 501 (553)
T ss_pred hccH--HHHHHHHHHHHH
Confidence 8877 478887777654
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.3e-12 Score=108.13 Aligned_cols=232 Identities=11% Similarity=-0.030 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccC----------------------------------CC-CHHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLS----------------------------------AK-TSETYTALLHLYA 55 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----------------------------------~p-~~~~~~~li~~~~ 55 (295)
......+..+|...+++++|.++|+.+.+. .| .+.+|.++..+|.
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 355667888999999999999999877443 23 4677999999999
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHH
Q 022531 56 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 135 (295)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 135 (295)
-+++.+.|++.|++..+.+ +-...+|+.+.+-++...++|+|...|+..+..... +-.+|.-+.-.|.+.++++.|+-
T Consensus 433 LQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHH
Confidence 9999999999999999886 337889999999999999999999999988763211 23345556777999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 136 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
.|+.+..- .|.+.+....+...+.+.|+.|+|++ ++++.....++ |...--..+..+...++.++|+..++++++.
T Consensus 511 ~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~-~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 511 HFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQ-LYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHH-HHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 99999873 45677778888899999999999999 89988776654 5555555666778899999999999999886
Q ss_pred cCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 216 KQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 216 ~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
.|+. ..|..+...|.+.|+.+.|+.-|.-+..-
T Consensus 587 --vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 587 --VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred --CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 5554 55677889999999999999999877664
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=6.8e-11 Score=94.36 Aligned_cols=254 Identities=12% Similarity=0.036 Sum_probs=187.8
Q ss_pred HHHhccChhHHHHHHhhcccCC-CC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCH
Q 022531 20 LMTKVFGIHSGERYFEGLPLSA-KT-SETYTALLHLYAGAKWTEKAEELFERVKQSNL--SFNALMYNEMMTLYMSVGQV 95 (295)
Q Consensus 20 ~~~~~~~~~~A~~~~~~~~~~~-p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~ 95 (295)
++....+.+++..=.+.....+ |+ ...-+....+.-...++++|+.+|+++.+.+- --|..+|..++..--....+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3444445555555555555442 42 22223333344456778888888888887640 01566777666543322211
Q ss_pred H-HHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHH
Q 022531 96 E-KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL 174 (295)
Q Consensus 96 ~-~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (295)
. -|..+++ . -+--+.|+.++.+-|+-.++.++|..+|++..+. .+....+|+.+.+-|....+...|.+ -+
T Consensus 316 s~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~-sY 387 (559)
T KOG1155|consen 316 SYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIE-SY 387 (559)
T ss_pred HHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHH-HH
Confidence 1 1222221 1 1223467888888899899999999999999985 35677889999999999999999999 88
Q ss_pred HHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCC
Q 022531 175 VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 254 (295)
Q Consensus 175 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 254 (295)
....+-.+ .|-..|-.|.++|.-.+...-|+-.|++..... +-|+..|.+|..+|.+.++.++|++.|.+....+ .
T Consensus 388 RrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--d 463 (559)
T KOG1155|consen 388 RRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--D 463 (559)
T ss_pred HHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--c
Confidence 88877554 488999999999999999999999999887763 4467889999999999999999999999998865 4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 255 FDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 255 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.+...+..|...|-+.++.++|..+|..-++
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5678899999999999999999999887765
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=3e-10 Score=97.48 Aligned_cols=117 Identities=11% Similarity=0.057 Sum_probs=60.2
Q ss_pred ccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022531 24 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 102 (295)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 102 (295)
.|++++|.+++.++....| +...|..|...|-..|+.+++...+-..-..+ +-|...|-.+.....+.|++++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 3666777766666666555 56666666666666666666665554433332 334455555555555555555555555
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 103 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
.+..+... ++...+---...|-+.|+...|...|.++..
T Consensus 231 ~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 231 SRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred HHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 55544321 2222222233334444444444444444433
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.6e-11 Score=93.90 Aligned_cols=226 Identities=9% Similarity=0.020 Sum_probs=96.6
Q ss_pred HHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 96 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 96 (295)
+...|.+.|.+.+|.+.|+.-..+.|-+.||-.|-++|.+..++..|+.+|.+-.+. ++-|+.-...+.+.+-..++.+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHH
Confidence 334444444444554444444444444444444444444444444454444444433 1222222233344444444444
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 022531 97 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 176 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (295)
+|.++|+...+.. ..++....++...|.-.++++-|+.+|+++.+- | ..++..|+.+.-+|.-.+++|-++. -|.+
T Consensus 308 ~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G-~~speLf~NigLCC~yaqQ~D~~L~-sf~R 383 (478)
T KOG1129|consen 308 DALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-G-AQSPELFCNIGLCCLYAQQIDLVLP-SFQR 383 (478)
T ss_pred HHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-c-CCChHHHhhHHHHHHhhcchhhhHH-HHHH
Confidence 4444444444431 123333444444444444444455544444443 2 1233444444444444444444444 4444
Q ss_pred HHHhcCCCcc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 177 AEKSITQRQW--ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 177 ~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
......+|+. -.|..+.......|++.-|.+.|+....++ .-+...++.|.-.-.+.|++++|..++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 4333322221 233333333344444444444444433332 1223334444444444444444444444433
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=3.2e-11 Score=92.22 Aligned_cols=232 Identities=11% Similarity=-0.059 Sum_probs=194.1
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh-HHHHHHHHHc
Q 022531 48 TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT-YNLWISSCAA 126 (295)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~ 126 (295)
+.+.++|.+.|-+.+|...|+.-... .|-+.||-.|-..|.+..+++.|+.+|.+-.+. .|-.+| ..-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56889999999999999999987776 477889999999999999999999999998875 455555 4456677888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHH
Q 022531 127 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 206 (295)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 206 (295)
.++.++|.++|+...+. .+.++....++...|.-.++.+-|.. ++.++...|.. +...|+.+.-+|.-.++++-++
T Consensus 303 m~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~Alr-yYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALR-YYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHH-HHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 89999999999999874 35677777788888999999999999 99999998876 7788999988899999999999
Q ss_pred HHHHHHHhccCCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 207 QIWKSLRMTKQKMTS--RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 207 ~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
--|.+....--.|+. ..|-.+-......||+..|.+.|+-..... ..+...+|.|.-.-.+.|+++.|..+++...
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999887655433443 346667777888999999999999887755 4577899999999999999999999999877
Q ss_pred hcCCCCC
Q 022531 285 QKNCAPT 291 (295)
Q Consensus 285 ~~g~~p~ 291 (295)
. +-|+
T Consensus 457 s--~~P~ 461 (478)
T KOG1129|consen 457 S--VMPD 461 (478)
T ss_pred h--hCcc
Confidence 5 4454
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.43 E-value=1.1e-10 Score=100.94 Aligned_cols=277 Identities=14% Similarity=0.112 Sum_probs=205.3
Q ss_pred CCCHHHHHHHHHHHHhccChhHHHHHHhhcccC-----CCCH------HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCC
Q 022531 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-----AKTS------ETYTALLHLYAGAKWTEKAEELFERVKQSNLS 76 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~p~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 76 (295)
.+-+...|.+.......|++.+|...|+..... .++. .+-..+...+-..++++.|.+.|..+.+..
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-- 526 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-- 526 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--
Confidence 377778888888888899999999988877655 1222 122334555555678888999998888764
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 022531 77 FN-ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 155 (295)
Q Consensus 77 p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 155 (295)
|. +..|--+.......+...+|...+++..+.. ..++..++.+...+.+...+..|.+-|....+.....+|+...-+
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 33 3344444433334567888888888887753 346666777777888888888888877777665444566666666
Q ss_pred HHHHHHh------------cCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHh
Q 022531 156 LVNIYIT------------ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 223 (295)
Q Consensus 156 l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 223 (295)
|.+.|.+ .+..+.|.+ .|.++....+. |...-|-+...++..|++.+|..+|.+.++... -...+
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq-~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv 682 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQ-LYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDV 682 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHH-HHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCce
Confidence 6665542 345677777 77776665543 777777788888999999999999999988764 24457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC
Q 022531 224 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 292 (295)
|..+.++|...|++..|.++|+...+......+..+...|.+++-+.|.+.+|.+.+...+. ..|..
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~ 749 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSN 749 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCcc
Confidence 88899999999999999999999988776667788889999999999999999998877765 44443
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.7e-09 Score=84.97 Aligned_cols=267 Identities=10% Similarity=0.001 Sum_probs=202.8
Q ss_pred HHHHHHh--ccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 022531 17 RIDLMTK--VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 93 (295)
Q Consensus 17 li~~~~~--~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 93 (295)
+.++..+ .|++..|+++...-.+.++ ....|..-..+--+.|+.+.+-..+.+.-+.--.++....-+........|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 4444433 6899999999998777765 455666677888889999999999999988733567777888888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH-------HHHHHHHHHHHhcCch
Q 022531 94 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW-------VKYVNLVNIYITASHL 166 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~ 166 (295)
+.+.|..-..++.+.+.. +........++|.+.|++.....++..+.+. +.-.+. .+|..+++=....+..
T Consensus 168 d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 168 DYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999987554 6678899999999999999999999999997 544443 3456666655555555
Q ss_pred hhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
+.-.. .++..-.. .+.++..-.+++.-+.+.|+.++|.++.++-.+.+..|+ -...-.+.+.++...-++..+.
T Consensus 246 ~gL~~-~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 246 EGLKT-WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred hHHHH-HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHH
Confidence 55444 45544332 233556667788888999999999999999988877776 2233345677788777788877
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCCC
Q 022531 247 WKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 295 (295)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 295 (295)
..+..+. +...+.+|...|.+.+.|.+|...|+...+ ..|+..+|
T Consensus 320 ~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~ 364 (400)
T COG3071 320 WLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDY 364 (400)
T ss_pred HHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhH
Confidence 7765433 446788899999999999999999997765 56665553
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.9e-10 Score=92.15 Aligned_cols=272 Identities=12% Similarity=-0.020 Sum_probs=189.4
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
++.....-.+-+-..+++.+..++++.+.+..| ....+-.-|.++...|+..+-..+=.++.+. .|-.+.+|-++.-.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 444455556667777888888888888877755 6666666666777777766666666666665 35567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
|.-.|...+|.+.|.+.... .|. ...|-....+|+-.|..|+|...+..+-+. ++-..--+--+.--|.+.++.+
T Consensus 322 Yl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHH
Confidence 88888888888888876653 333 456777888888888888888877765542 1111112223444567788888
Q ss_pred hHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CC----CCHHhHHHHHHHHHhcCChHHHH
Q 022531 168 NAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK--QK----MTSRNYICILSSYLMLGHLKEVG 241 (295)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~----~~~~~~~~li~~~~~~~~~~~A~ 241 (295)
.|.+ +|.+.....+ .|+...+-+.......+.+.+|..+|+.....- +. .-..+++.|.++|.+.+.+++|+
T Consensus 398 LAe~-Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEK-FFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHH-HHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 8888 7776655443 367777777766667788888888887665210 01 12235677888888888888888
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC
Q 022531 242 EIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 292 (295)
..++...... +.+..++.++.-.|...|+++.|.+.|.+.+- +.||.
T Consensus 476 ~~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 476 DYYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 8888887744 46788888888888888888888888888764 66665
No 53
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=1.2e-09 Score=79.79 Aligned_cols=209 Identities=11% Similarity=-0.053 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 124 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 124 (295)
.+...|.-.|...|+...|..-+++.++.+ +-+..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 456778889999999999999999999987 456678999999999999999999999998886433 566777788888
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHH
Q 022531 125 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 204 (295)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 204 (295)
|..|++++|...|++....+....-..+|..+.-+..+.|+.+.|.+ .+.+.....+. ...+.-.+.......|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~-~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE-YLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH-HHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 99999999999999988875555566788888889999999999999 88888776654 44566777888889999999
Q ss_pred HHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHH
Q 022531 205 IDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 261 (295)
Q Consensus 205 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 261 (295)
|..+++.....+. ++....-..|+.-.+.|+.+.+-++=.++.+.. |...-|.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f---P~s~e~q 244 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF---PYSEEYQ 244 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCcHHHH
Confidence 9999998877764 888888888888889999998888766666643 5544443
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=2.5e-10 Score=95.13 Aligned_cols=235 Identities=13% Similarity=0.129 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccC--------CCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHhC-----C--C
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLS--------AKTSE-TYTALLHLYAGAKWTEKAEELFERVKQS-----N--L 75 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~ 75 (295)
.+...|...|...|++++|..++++..+. .|... ..+.+...|...+++++|..+|+++..- | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555777777777777777777665543 23322 2233556666667777777776665431 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCChH-hHHHHHHHHHccCCHHHHHHHHHHHhhcC--CC
Q 022531 76 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKR-----KNV-VPDIF-TYNLWISSCAATLNIDQVKKFLDEMSCDS--GG 146 (295)
Q Consensus 76 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~ 146 (295)
+--..+++.|...|.+.|++++|...++...+ .|. .|... -++.+...|...+++++|..+++...+.- -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11233556666666777776666666554432 111 12221 24445555666666666666665533210 01
Q ss_pred C----CCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCC------C-ccccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 147 S----DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ------R-QWITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 147 ~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
. .-..+++.|...|-+.|++++|++ +++........ + ....++.|...|.+.+...+|.++|.+-...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~-~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEE-LYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1 122456666666666666666666 55554432211 1 1233445555566666666666555543211
Q ss_pred c--CCCC----HHhHHHHHHHHHhcCChHHHHHHHHHH
Q 022531 216 K--QKMT----SRNYICILSSYLMLGHLKEVGEIIDQW 247 (295)
Q Consensus 216 ~--~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~ 247 (295)
. +.|+ ..+|..|...|.+.|+++.|.++.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0 1111 233555666666666666666655544
No 55
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=2.9e-09 Score=89.80 Aligned_cols=259 Identities=11% Similarity=0.031 Sum_probs=168.0
Q ss_pred HHHHHhccChhHHHHHHhhcccCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhc---
Q 022531 18 IDLMTKVFGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY-NEMMTLYMSV--- 92 (295)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~--- 92 (295)
...+...|++++|++.++.-...-+| ..........+.+.|+.++|..+|..+++.+ |+...| ..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 45567788888888888776655555 4455666778888888888888888888886 444444 4444444211
Q ss_pred --CCHHHHHHHHHHHHh----------------------------------CCCCCChHhHHHHHHHHHccCCHHHHHHH
Q 022531 93 --GQVEKVALVVEEIKR----------------------------------KNVVPDIFTYNLWISSCAATLNIDQVKKF 136 (295)
Q Consensus 93 --~~~~~a~~~~~~m~~----------------------------------~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 136 (295)
.+.+...++|+++.. .|++ .+|+.|-..|....+.+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 245556666666543 2332 2344444444444444444444
Q ss_pred HHHHhhc----C---------CCCCCH--HHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCC
Q 022531 137 LDEMSCD----S---------GGSDDW--VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 201 (295)
Q Consensus 137 ~~~~~~~----~---------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 201 (295)
+...... + .-+|+. .++.-+...|-..|++++|.+ +++...+..+. .+..|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~-~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE-YIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 4443321 0 123444 344666788888999999999 88877776543 35667777788889999
Q ss_pred HHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCC--CHH----HH--HHHHHHHHccCCh
Q 022531 202 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF--DIS----AC--NRLLGAFSDVGLT 273 (295)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~----~~--~~l~~~~~~~g~~ 273 (295)
+.+|.+.++..+... .-|...-+..+..+.++|++++|.+++..+.+.+. .| |.. .| .....+|.+.|++
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999887764 22444455678888899999999999888876553 22 221 12 3455788888998
Q ss_pred HHHHHHHHHHHh
Q 022531 274 EKANEFHMLLLQ 285 (295)
Q Consensus 274 ~~a~~~~~~m~~ 285 (295)
..|++.|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 888877766543
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=1.2e-09 Score=91.18 Aligned_cols=240 Identities=19% Similarity=0.189 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-C
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQS-----NL-SFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRK-----N-V 110 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~ 110 (295)
..+...|...|...|+++.|..+++...+. |. -|... ..+.+...|...+++++|..+|+++..- | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666999999999999999999987654 21 23333 3445777899999999999999998752 2 1
Q ss_pred CCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhc----CC-CCCCH-HHHHHHHHHHHhcCchhhHHHHHHHHHHHhc--
Q 022531 111 VPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCD----SG-GSDDW-VKYVNLVNIYITASHLVNAESSTLVEAEKSI-- 181 (295)
Q Consensus 111 ~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 181 (295)
.|. ..+++.|..+|.+.|++++|..+++....- .+ ..|.. ..++.+...++..+++++|.. ++....+..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~-l~q~al~i~~~ 357 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK-LLQKALKIYLD 357 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHh
Confidence 222 456888888899999999988887765431 11 12222 245677888999999999999 666655422
Q ss_pred -CCCc----cccHHHHHHHHHhcCCHHHHHHHHHHHHhc----cCC--CC-HHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 182 -TQRQ----WITYDFLIILYAGLGNKDKIDQIWKSLRMT----KQK--MT-SRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 182 -~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
+.++ ..+++.|...|...|++++|+++++..... +.+ +. ...++.+...|.+.++..+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1222 357889999999999999999999987533 111 21 34577889999999999999999987532
Q ss_pred ----hcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 250 ----SATSDFD-ISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 250 ----~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
-|...|+ ..+|..|..+|...|+++.|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3333444 4689999999999999999999988775
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=2.3e-09 Score=85.34 Aligned_cols=224 Identities=11% Similarity=0.028 Sum_probs=135.5
Q ss_pred ChhHHHHHHhhcccCC---C--CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 022531 26 GIHSGERYFEGLPLSA---K--TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 100 (295)
Q Consensus 26 ~~~~A~~~~~~~~~~~---p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 100 (295)
..+.++.-+.++.... | ....|..+...+.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455555555555431 2 24567777778888888888888888887765 4467788888888888888888888
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Q 022531 101 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 180 (295)
Q Consensus 101 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (295)
.|++..+.... +..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|.. .+......
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~-~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKE-NLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHH-HHHHHHhh
Confidence 88888774322 35567777777778888888888888877641 322211222223345667788888 66554433
Q ss_pred cCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc---C--CC-CHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCC
Q 022531 181 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK---Q--KM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 254 (295)
Q Consensus 181 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 254 (295)
. .++...+ .+ .....|+...+ +.+..+.+.- . .| ....|..+...+.+.|++++|...|++..+.. +
T Consensus 195 ~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~--~ 267 (296)
T PRK11189 195 L-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN--V 267 (296)
T ss_pred C-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence 2 2222211 22 22334554443 2444433211 0 11 22456677788888888888888888877643 3
Q ss_pred CCHHHHHH
Q 022531 255 FDISACNR 262 (295)
Q Consensus 255 ~~~~~~~~ 262 (295)
||..-+..
T Consensus 268 ~~~~e~~~ 275 (296)
T PRK11189 268 YNFVEHRY 275 (296)
T ss_pred chHHHHHH
Confidence 45444433
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.4e-09 Score=89.07 Aligned_cols=251 Identities=12% Similarity=0.006 Sum_probs=196.1
Q ss_pred CCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022531 9 LSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT 87 (295)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 87 (295)
+....+..-|..+...|+..+-..+=..+.+..| ...+|-++.-.|...|+.++|.+.|.+....+ +.=...|-....
T Consensus 276 fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fgh 354 (611)
T KOG1173|consen 276 FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGH 354 (611)
T ss_pred CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhH
Confidence 3444455666688888887777777777777777 78899999999999999999999999887654 223568999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh-HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 022531 88 LYMSVGQVEKVALVVEEIKRKNVVPDI-FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
.|+-.|..++|+..|....+. -|.. .-+--+.--|.+.+..+.|.++|.+... -.|.|+.+.+-+.-..-..+.+
T Consensus 355 sfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y 430 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEY 430 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhh
Confidence 999999999999999877663 1111 1123344468889999999999999986 4577888888888888889999
Q ss_pred hhHHHHHHHHHHHhcCCC------ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHH
Q 022531 167 VNAESSTLVEAEKSITQR------QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 240 (295)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 240 (295)
.+|.. +|.......... -..+++.|..+|.+.+..++|+..++...... +-+..++.++.-.|...|+++.|
T Consensus 431 ~~A~~-~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 431 PEALK-YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred HHHHH-HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHH
Confidence 99999 777766322111 23458889999999999999999999887664 55778899999999999999999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHc
Q 022531 241 GEIIDQWKQSATSDFDISACNRLLGAFSD 269 (295)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (295)
...|.+.... .|+-.+-..++..+..
T Consensus 509 id~fhKaL~l---~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 509 IDHFHKALAL---KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHhc---CCccHHHHHHHHHHHH
Confidence 9999998763 4776666666655443
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=3.3e-09 Score=77.53 Aligned_cols=206 Identities=12% Similarity=-0.019 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 91 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 91 (295)
+..-|.-.|...|+...|..-+++..++.| +..+|..+...|-+.|+.+.|.+-|++..+.. +-+..+.|.-..-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 455677889999999999999999999988 67899999999999999999999999999875 4577899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHH
Q 022531 92 VGQVEKVALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 170 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (295)
.|++++|...|++......-| -..+|..+.-+..+.|+++.|...|++.... .+....+...+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999998864322 2467888888889999999999999998875 2445566778889999999999999
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHH
Q 022531 171 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225 (295)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 225 (295)
. +++.....+. ++....-..|..-.+.|+.+.+-+.=.++... -|.+.-|.
T Consensus 194 ~-~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 194 L-YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred H-HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 9 7777766665 77777777788888899999998888777665 56655544
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.6e-09 Score=86.83 Aligned_cols=206 Identities=11% Similarity=0.108 Sum_probs=159.6
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHH
Q 022531 57 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 136 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 136 (295)
.|++++|.+.+++....+-.-....|| +...+-..|++++|+..|-++-.- +..+......+.+.|-...++.+|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 478888888888888765222222232 333466789999999998776442 233667777888889999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 022531 137 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 216 (295)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 216 (295)
+-+... -++.++.+.+.+...|-+.|+...|.+ ....-.... +.+..+...|..-|....-+++++.+|++..-
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq-~~ydsyryf-p~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQ-CHYDSYRYF-PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhh-hhhhccccc-CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 888775 578889999999999999999999999 555444433 34777878888888888899999999997644
Q ss_pred CCCCHHhHHHHHHHH-HhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCC
Q 022531 217 QKMTSRNYICILSSY-LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL 272 (295)
Q Consensus 217 ~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 272 (295)
++|+..-|..+|..| .+.|++.+|..+|+...++. +.|..+..-|++.+...|-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf--pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF--PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--ccchHHHHHHHHHhccccc
Confidence 589999999776655 57899999999999988754 5788888889998888774
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.5e-09 Score=83.11 Aligned_cols=262 Identities=11% Similarity=-0.008 Sum_probs=154.0
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 91 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 91 (295)
....+...+...|+.++|...|+...-..| +..........+.+.|+.++...+...+.... .-+...|-.-......
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~ 312 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYD 312 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhh
Confidence 333444444444444444444444333333 22222222223333444444444433333221 1122223323333334
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 022531 92 VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 171 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (295)
.++++.|+.+-++-.+... .+...|-.-...+...+++++|.-.|+..+.. -|.+...|.-++.+|...|++.+|.-
T Consensus 313 ~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHH
Confidence 4555556655555554322 13444554555667778888888888887753 34567788888888888888888877
Q ss_pred HHHHHHHHhcCCCccccHHHHH-HHHH-hcCCHHHHHHHHHHHHhccCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 172 STLVEAEKSITQRQWITYDFLI-ILYA-GLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
.-+...+..+. +..+.+.+. ..+. ....-++|..+++.-... .|+- ...+.+...+.+.|..+++..+++...
T Consensus 390 -~An~~~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 390 -LANWTIRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred -HHHHHHHHhhc-chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 55555544433 444444432 1221 223346777777754443 4442 345677888999999999999999988
Q ss_pred hhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 249 QSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.. .||....+.|.+.+...+.+++|++.|...+.
T Consensus 466 ~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 466 II---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 74 38999999999999999999999999988775
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.33 E-value=4.7e-09 Score=90.33 Aligned_cols=273 Identities=14% Similarity=0.090 Sum_probs=185.5
Q ss_pred CCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022531 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 86 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 86 (295)
+..+..|-+|...|-..|+.+++...+-......| |...|..+.....+.|.+++|.-+|.+.++.. +++...+---+
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers 248 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERS 248 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence 44567888999999999999999888766666556 78889999999889999999999999988875 55655555667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHH----HHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 022531 87 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL----WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 162 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (295)
..|-+.|+...|...|.++.+...+.|..-+.. .+..+...++-+.|.+.++......+-..+...++.++..|.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 778888888888888888887644333332332 3444555666677777777665533444555566666666666
Q ss_pred cCchhhHHHHHHHHHHH-------------------------------------------------------------hc
Q 022531 163 ASHLVNAESSTLVEAEK-------------------------------------------------------------SI 181 (295)
Q Consensus 163 ~~~~~~a~~~~~~~~~~-------------------------------------------------------------~~ 181 (295)
...++.|.. ....... ..
T Consensus 329 ~~q~d~~~~-~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n 407 (895)
T KOG2076|consen 329 NKQSDKALM-KIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN 407 (895)
T ss_pred hHHHHHhhH-HHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc
Confidence 666666655 2222211 11
Q ss_pred --CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHH
Q 022531 182 --TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA 259 (295)
Q Consensus 182 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 259 (295)
+.-++-.|..+..+|...|++.+|+++|..+......-+...|-.+.++|...|..++|.+.|....... +.+...
T Consensus 408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~ 485 (895)
T KOG2076|consen 408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDA 485 (895)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhh
Confidence 1112334455666677777778888877777766544455667777777777888888888777777643 234445
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH
Q 022531 260 CNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 260 ~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
--.|-..+.+.|+.++|.+.+..|.
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhccc
Confidence 5566777777788888777777765
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=7.2e-10 Score=88.70 Aligned_cols=256 Identities=14% Similarity=0.070 Sum_probs=184.6
Q ss_pred HHHhccChhHHHHHHhhcccCC-C--CHHHHHH-HHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 022531 20 LMTKVFGIHSGERYFEGLPLSA-K--TSETYTA-LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV 95 (295)
Q Consensus 20 ~~~~~~~~~~A~~~~~~~~~~~-p--~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 95 (295)
-+.+.|+++.|.++++-+.... . +...-|. .+..+-...++..|...-+.....+ +-+......-.+.-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4678899999999988877642 1 2222222 2333323446777777776665443 22333333333344567999
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHH
Q 022531 96 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV 175 (295)
Q Consensus 96 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (295)
++|.+.|++.+...-.-....|+ +.-.+-..|+.++|++.|-++.. -...+..+...+.+.|....+...|.+ ++.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie-~~~ 582 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIE-LLM 582 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHH-HHH
Confidence 99999999998753221222233 33346788999999999988765 345678888899999999999999999 665
Q ss_pred HHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCC
Q 022531 176 EAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 255 (295)
Q Consensus 176 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 255 (295)
+... .++.|....+.|...|-+.|+-.+|.+.+-.--. -++-|..+...|...|....-+++|+.+|++.. ...|
T Consensus 583 q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp 657 (840)
T KOG2003|consen 583 QANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQP 657 (840)
T ss_pred Hhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCc
Confidence 5533 4445788899999999999999999987754322 245677888888888998888999999998765 4579
Q ss_pred CHHHHHHHHHHH-HccCChHHHHHHHHHHHh
Q 022531 256 DISACNRLLGAF-SDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 256 ~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~ 285 (295)
+..-|..++..| .+.|++.+|.++++...+
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999887655 678999999999998865
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=2.2e-09 Score=85.50 Aligned_cols=196 Identities=16% Similarity=0.090 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
...|..+...+.+.|+.++|...|++.....| +...|+.+...+...|++++|...|++..+.. +-+..+|..+..++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34577788889999999999999999988877 78999999999999999999999999999875 33577889999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhH
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (295)
...|++++|++.|++..+. .|+..........+...+++++|...|.+.... ..|+...+ . ......|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~--~~~~~lg~~~~~ 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-N--IVEFYLGKISEE 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-H--HHHHHccCCCHH
Confidence 9999999999999999885 344332222233345667899999999776543 23332222 2 223345555443
Q ss_pred HHHHHHHHHHhcC------CCccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 022531 170 ESSTLVEAEKSIT------QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 216 (295)
Q Consensus 170 ~~~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 216 (295)
+ .+..+..... +....+|..+...+...|+.++|+..|++....+
T Consensus 216 -~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 -T-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -H-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2333332211 1133578889999999999999999999988764
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.30 E-value=1.3e-08 Score=83.73 Aligned_cols=266 Identities=10% Similarity=-0.059 Sum_probs=158.5
Q ss_pred HHHHHhccChhHHHHHHhhcccCCC-CHHHHHH---HHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 022531 18 IDLMTKVFGIHSGERYFEGLPLSAK-TSETYTA---LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 93 (295)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 93 (295)
...+...|++++|.++++...+..| +...+.. ........+..+.+.+.+.. .....+........+...+...|
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcC
Confidence 3345667889999999988777666 4445442 22222224555555555554 21222223445556677888899
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH--HHHHHHHHHHHhcCchhhHHH
Q 022531 94 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW--VKYVNLVNIYITASHLVNAES 171 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~ 171 (295)
++++|.+.+++..+... .+...+..+...+...|++++|...+++........|+. ..|..+...+...|++++|..
T Consensus 129 ~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999888642 345677778888889999999999998877642212332 345578888899999999999
Q ss_pred HHHHHHHHhcCC-CccccH-H--HHHHHHHhcCCHHHHHHH--HHHHHhccC--CCCHHhHHHHHHHHHhcCChHHHHHH
Q 022531 172 STLVEAEKSITQ-RQWITY-D--FLIILYAGLGNKDKIDQI--WKSLRMTKQ--KMTSRNYICILSSYLMLGHLKEVGEI 243 (295)
Q Consensus 172 ~~~~~~~~~~~~-~~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~ 243 (295)
.++......+. +..... + .++.-+...|....+.++ +........ ......-.....++...|+.+.|.++
T Consensus 208 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 208 -IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred -HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 78776433221 111111 1 222223334443333333 111111110 11111222567777888999999999
Q ss_pred HHHHhhhcCC-------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 244 IDQWKQSATS-------DFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 244 ~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
++.+...... ...+...-...-++...|+.++|.+.+.+.+..
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9888663311 011222222333456889999999998887654
No 66
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.29 E-value=3.5e-08 Score=82.60 Aligned_cols=225 Identities=10% Similarity=0.015 Sum_probs=114.8
Q ss_pred HHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 022531 14 YATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV 92 (295)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 92 (295)
|.....+--..|..+.-..+|+......| ....|-.....+...|++..|..++....+.. +-+...|-+-+..-...
T Consensus 553 Wlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en 631 (913)
T KOG0495|consen 553 WLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFEN 631 (913)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhcc
Confidence 33333333344555555555555555544 44445555555556666666666666666553 23455666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHH
Q 022531 93 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS 172 (295)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (295)
.+++.|..+|.+.... .|+...|.--+..---.+..++|++++++..+. ++.-...|..+.+.+.+.++++.|.+
T Consensus 632 ~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~- 706 (913)
T KOG0495|consen 632 DELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMARE- 706 (913)
T ss_pred ccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHH-
Confidence 6666666666665553 344455544444444455666666666665552 33334455555555666666666555
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 173 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
.|..-.+. ++.....|-.|...=-+.|.+-+|..++++.+-.+ +-+...|...|+.=.+.|..+.|..+..+
T Consensus 707 aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 707 AYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33221111 11123334444444444455555555555544433 22334444555555555555555444433
No 67
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.29 E-value=3.1e-08 Score=82.88 Aligned_cols=263 Identities=11% Similarity=0.021 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
.+|..-.+.|.+.+.++-|..+|....+..| +...|......--..|..+....+|++.... .+-....|-.....+-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHH
Confidence 3566667788888888888888888887766 7788888888888888899999999988877 3445556666667777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHH
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 170 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (295)
..|+...|..++.+..+.... +...|-..+..-..+.+++.|..+|.+.... .|+..+|..-+...--.++.++|.
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~---sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI---SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc---CCcchhhHHHhHHHHHhhhHHHHH
Confidence 789999999999988886433 6778888888888999999999999988854 578888888888888889999999
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 171 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
+ ++++..+..+. -...|..+.+.+-..++.+.|.+.|..=.+. -|+ ...|..|...=.+.|.+-.|..++++...
T Consensus 672 r-llEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 672 R-LLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred H-HHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9 77877776643 2356667777788888888888887653332 344 34566777777888899999999999888
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 250 SATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 250 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
++ +.|...|-..|+.=.+.|+.+.|..+..+.++
T Consensus 748 kN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 748 KN--PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred cC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66 46888999999999999999999998888775
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.3e-09 Score=86.45 Aligned_cols=223 Identities=12% Similarity=0.060 Sum_probs=146.4
Q ss_pred HHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 022531 19 DLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK 97 (295)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 97 (295)
.++.-.|+.-.|.+-|+......| +...|--+..+|+...+-++....|.+..+.+ +-++.+|..-...+.-.+++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 344456777777777777766655 44447777777777777788888888777765 4566777777777777777888
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHH
Q 022531 98 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA 177 (295)
Q Consensus 98 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (295)
|..=|++....... +...|..+.-+.-+.++++++...|++.++ .+|..+.+|+.....+...++++.|.+ .++..
T Consensus 413 A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k-~YD~a 488 (606)
T KOG0547|consen 413 AIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVK-QYDKA 488 (606)
T ss_pred HHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHH-HHHHH
Confidence 88888777764221 345555555555677778888888888777 356667777777888888888888887 66665
Q ss_pred HHhcCCCcc-----cc--HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 178 EKSITQRQW-----IT--YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 178 ~~~~~~~~~-----~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
..--+..+. .+ --.++.. .-.+++..|++++++..+... -....|..|.+.-.+.|+.++|+++|+.-.
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 543332111 11 1111111 123677777777777665431 133457777777778888888888877654
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.1e-08 Score=82.57 Aligned_cols=225 Identities=11% Similarity=0.028 Sum_probs=177.4
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCH
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 130 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 130 (295)
...+.-.|+.-.|..-|+..+...-.+ ...|--+..+|+...+.++.++.|++..+.+.. |+.+|..-.....-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHH
Confidence 334555788999999999999886333 333777888899999999999999999886543 566777777777888999
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHH
Q 022531 131 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 210 (295)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 210 (295)
++|..=|++.+.- -+.+...|..+..+.-+.++++++.. .|++.....+. .+..|+.....+...+++++|.+.|+
T Consensus 411 e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~-~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 411 EEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMK-TFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999874 35566677777778889999999999 99999888765 67889999999999999999999999
Q ss_pred HHHhcc-----CCCCHHhHH--HHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 022531 211 SLRMTK-----QKMTSRNYI--CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 283 (295)
Q Consensus 211 ~m~~~~-----~~~~~~~~~--~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 283 (295)
...+.. +..+..++. .++. +.-.+++..|.++++...+.. +.....|..|...-.+.|+.++|.++|++.
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 876542 112222222 1111 123489999999999998854 456778999999999999999999999975
Q ss_pred H
Q 022531 284 L 284 (295)
Q Consensus 284 ~ 284 (295)
.
T Consensus 564 a 564 (606)
T KOG0547|consen 564 A 564 (606)
T ss_pred H
Confidence 4
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=2.4e-07 Score=76.18 Aligned_cols=269 Identities=11% Similarity=-0.021 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC---CH-HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK---TS-ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 86 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p---~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 86 (295)
...|..+...+...|+.+.+...+.......| +. .........+...|++++|.+++++..+.. |.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44667777777778888887777666554422 22 223333456677899999999999988764 445555553 2
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 022531 87 TLYMS----VGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 161 (295)
Q Consensus 87 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (295)
..+.. .+..+.+.+.++. ..+..|+ ......+...+...|++++|...+++..+. .+.+...+..+..++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~ 159 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHH
Confidence 23333 4455555555554 1122333 334455666788999999999999999985 3556778889999999
Q ss_pred hcCchhhHHHHHHHHHHHhcCC-Ccc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CCCHHhH-H--HHHHHHHhc
Q 022531 162 TASHLVNAESSTLVEAEKSITQ-RQW--ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-KMTSRNY-I--CILSSYLML 234 (295)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~~ 234 (295)
..|++++|.. .+.......+. ++. ..|..+...+...|+.++|..++++...... .+..... + .++.-+...
T Consensus 160 ~~g~~~eA~~-~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 160 MQGRFKEGIA-FMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HcCCHHHHHH-HHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 9999999999 88877665432 222 2355678889999999999999999854322 1111111 1 334444455
Q ss_pred CChHHHHHH--HHHHhhhcCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 235 GHLKEVGEI--IDQWKQSATS-DFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 235 ~~~~~A~~~--~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
|..+.+.++ +......... ............++...|+.+.|...++.+...
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 544433333 2211111100 111122235677888999999999999988653
No 71
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=1.5e-07 Score=76.04 Aligned_cols=271 Identities=9% Similarity=0.090 Sum_probs=153.4
Q ss_pred CCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhC-CC-CCCHHHHH
Q 022531 6 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQS-NL-SFNALMYN 83 (295)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-~p~~~~~~ 83 (295)
.+.|+.+.|.+.|.+=.+.+.++.|..+++...-.+|++.+|--....--++|.+..|..+|+...+. |- ..+...++
T Consensus 169 ~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv 248 (677)
T KOG1915|consen 169 EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV 248 (677)
T ss_pred cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 46789999999999999999999999999988887899999988888888889988888888877653 10 00112222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC------------------------C-------------------CCCChHhHHHH
Q 022531 84 EMMTLYMSVGQVEKVALVVEEIKRK------------------------N-------------------VVPDIFTYNLW 120 (295)
Q Consensus 84 ~li~~~~~~~~~~~a~~~~~~m~~~------------------------~-------------------~~p~~~~~~~l 120 (295)
+...-=.++..++.|.-+|+-..+. | -+-|-.+|--.
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy 328 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence 2222222333344333333222111 0 11233455556
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCCCHH-------HHHHH---HHHHHhcCchhhHHHHHHHHHHHhcCCCccccHH
Q 022531 121 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWV-------KYVNL---VNIYITASHLVNAESSTLVEAEKSITQRQWITYD 190 (295)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (295)
++.-...|+.+...++|+++.. +++|-.. +|.-+ +-.-....+.+.+.+ ++....+-.+ ....||.
T Consensus 329 lrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~-vyq~~l~lIP-HkkFtFa 404 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ-VYQACLDLIP-HKKFTFA 404 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhhcC-cccchHH
Confidence 6666677888888888888886 4555321 11111 111123456666667 6666665332 3445554
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 022531 191 FLIILYA----GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 266 (295)
Q Consensus 191 ~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (295)
.+--.|+ ++.++..|.+++... .|..|-..+|-..|..=.+.+.+|...++++...+-+ +-|..+|......
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAWSKYAEL 480 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHHHHHHHH
Confidence 4333332 445555555555543 2334555555555555555555555555555555432 2344445444444
Q ss_pred HHccCChHHHHHHHHHHH
Q 022531 267 FSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 267 ~~~~g~~~~a~~~~~~m~ 284 (295)
=...|+.+.|..+|.-.+
T Consensus 481 E~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHhhhHHHHHHHHHHHh
Confidence 444555555555554443
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.4e-08 Score=83.54 Aligned_cols=253 Identities=13% Similarity=0.028 Sum_probs=194.1
Q ss_pred HHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 022531 20 LMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 98 (295)
Q Consensus 20 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 98 (295)
-+.+.|++.+|.-.|+......| +...|-.|....+..++-..|+..+++..+.+ +-+..+.-.|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 45688999999999999988888 88999999999999999999999999999886 55778889999999999999999
Q ss_pred HHHHHHHHhCCCC--------CChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHH
Q 022531 99 ALVVEEIKRKNVV--------PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 170 (295)
Q Consensus 99 ~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (295)
+..++.......+ ++...-.. ..+.....+....++|-++....+..+|+.+...|.-.|--.|+++.|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999988654211 00000000 2223333455666777776665465688888889999999999999999
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 171 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
+ .|+......+. |..+||-|...++...+.++|+.-|++..+. +|+- +...-|.-+|...|.+++|.+.|-..+.
T Consensus 451 D-cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 D-CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred H-HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9 88888776654 8899999999999999999999999998876 5653 2233477888999999999998876543
Q ss_pred ---hc-----CCCCCHHHHHHHHHHHHccCChHHHHHH
Q 022531 250 ---SA-----TSDFDISACNRLLGAFSDVGLTEKANEF 279 (295)
Q Consensus 250 ---~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 279 (295)
++ ...++...|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 21 1123345787777777777777755443
No 73
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.17 E-value=1e-07 Score=83.01 Aligned_cols=267 Identities=14% Similarity=0.024 Sum_probs=161.1
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCC---C-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH--HHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSA---K-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA--LMYN 83 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~ 83 (295)
+|...+.|.+.|.-.|+++.+..+...+.... + -...|..+.++|-..|++++|...|-+..+.. |+. ..+-
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLV 346 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccccc
Confidence 45566677777777777777777776665542 1 34456777777777777777777776666553 333 3344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC----CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 022531 84 EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL----NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 159 (295)
Q Consensus 84 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (295)
.|...|.+.|+++.+...|+...+. .+-+..|..+|...|+..+ ..+.|..++...... .+.+...|-.+...
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQL 423 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHH
Confidence 5677777777777777777777665 2234566666666666554 446666666666653 35566666666666
Q ss_pred HHhcCchhhHHHHHHHHH----HHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc---cCCCCHH------hHHH
Q 022531 160 YITASHLVNAESSTLVEA----EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT---KQKMTSR------NYIC 226 (295)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~------~~~~ 226 (295)
+....-+.. +. ++... ...+..+.....|.+...+...|++++|...|...... ...++.. +--.
T Consensus 424 ~e~~d~~~s-L~-~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 424 LEQTDPWAS-LD-AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHhcChHHH-HH-HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 655544433 44 33332 23344455667777777778888888888888776544 1222221 1112
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 227 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+..++-..++.+.|.+.|..+.+.. +--+..|-.++......++..+|...++++.+
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 5555556667777777777776643 12233444444333344666667777766654
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=1.1e-07 Score=80.40 Aligned_cols=228 Identities=19% Similarity=0.197 Sum_probs=149.7
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH-c---
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA-A--- 126 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~--- 126 (295)
...+...|++++|++.+++-... +.............+.+.|+.++|..+|..+.+.+ |+...|...+..+. -
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567889999999999876554 43445566788899999999999999999999974 55555554444443 1
Q ss_pred --cCCHHHHHHHHHHHhhcC---------------------------------CCCCCHHHHHHHHHHHHhcCchhhHHH
Q 022531 127 --TLNIDQVKKFLDEMSCDS---------------------------------GGSDDWVKYVNLVNIYITASHLVNAES 171 (295)
Q Consensus 127 --~~~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (295)
..+.+....+|+++.... |+| .+++.+-..|....+.+-..+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 124566666776665431 111 233333344443333333333
Q ss_pred HHHHHHHHhc--------------CCCcc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-HHhHHHHHHHHHhc
Q 022531 172 STLVEAEKSI--------------TQRQW--ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLML 234 (295)
Q Consensus 172 ~~~~~~~~~~--------------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~ 234 (295)
++....... ..|+. .++..+.+.|...|++++|++++++..++ .|+ +..|..-.+.+-+.
T Consensus 165 -l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 165 -LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred -HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 333332211 12222 23345566777888888888888877776 455 45566777788888
Q ss_pred CChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC
Q 022531 235 GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCA 289 (295)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 289 (295)
|++++|.+.++....-. ..|...-+..+..+.++|++++|.+++......+..
T Consensus 242 G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~ 294 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD 294 (517)
T ss_pred CCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence 88888888888887744 356777777777888888888888888887766653
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=2.7e-08 Score=78.33 Aligned_cols=245 Identities=14% Similarity=0.031 Sum_probs=136.8
Q ss_pred HhccChhHHHHHHhhcccCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 022531 22 TKVFGIHSGERYFEGLPLSAK--TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 99 (295)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 99 (295)
.-.|++..++.-.+ .....+ +.....-+.+++...|+.+.++ .++.... .|.......+...+...++-+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34577777775554 222222 3445555667777777765433 3443333 566666655555554445555565
Q ss_pred HHHHHHHhCCCCCChHhH-HHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Q 022531 100 LVVEEIKRKNVVPDIFTY-NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE 178 (295)
Q Consensus 100 ~~~~~m~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (295)
.-+++....+..++..++ ......+...|++++|++++.. + .+.......+.+|.+.++++.|.+ .+..+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~-----~--~~lE~~al~Vqi~L~~~R~dlA~k-~l~~~~ 158 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK-----G--GSLELLALAVQILLKMNRPDLAEK-ELKNMQ 158 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT-----T--TCHHHHHHHHHHHHHTT-HHHHHH-HHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc-----c--CcccHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence 555554444333222222 2223345566777777776543 1 344555667777778888888887 676665
Q ss_pred HhcCCCccccHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCC
Q 022531 179 KSITQRQWITYDFLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 254 (295)
Q Consensus 179 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 254 (295)
+.. .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..... +
T Consensus 159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~ 232 (290)
T PF04733_consen 159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--P 232 (290)
T ss_dssp CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---C
T ss_pred hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--c
Confidence 432 12 333444444332 23577888888887554 45677777777777788888888888877776644 2
Q ss_pred CCHHHHHHHHHHHHccCCh-HHHHHHHHHHHh
Q 022531 255 FDISACNRLLGAFSDVGLT-EKANEFHMLLLQ 285 (295)
Q Consensus 255 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 285 (295)
-+..+...++-+....|+. +.+.+++.++..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3455566666666667766 556667776654
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=1.7e-08 Score=79.44 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA-LMYNEMMTLYM 90 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~ 90 (295)
..-..+.+++...|+++.++.-...-. .|.......+...+...++-+.++.-+++.......++. .........+.
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 345567788888888776554433322 467667766666665545566666666665544433233 33333445577
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCch
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT----ASHL 166 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 166 (295)
..|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI---DED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCc-HHHHHHHHHHHHHHhCchhH
Confidence 789999999988642 36677788899999999999999999999875 233 333444444433 4468
Q ss_pred hhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCCh-HHHHHHHH
Q 022531 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL-KEVGEIID 245 (295)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~ 245 (295)
.+|.. +|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +-++.+...++.+....|+. +.+.+++.
T Consensus 184 ~~A~y-~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 184 QDAFY-IFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CHHHH-HHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHH-HHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 99999 99997664 34677888888899999999999999999876654 33456666788887888877 67788888
Q ss_pred HHhhhc
Q 022531 246 QWKQSA 251 (295)
Q Consensus 246 ~~~~~~ 251 (295)
++....
T Consensus 261 qL~~~~ 266 (290)
T PF04733_consen 261 QLKQSN 266 (290)
T ss_dssp HCHHHT
T ss_pred HHHHhC
Confidence 887753
No 77
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=1.3e-06 Score=70.92 Aligned_cols=265 Identities=10% Similarity=0.070 Sum_probs=200.1
Q ss_pred HHHHHHHHHhccChhHHHHHHhhcccCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 022531 14 YATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV 92 (295)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 92 (295)
|..-..-=...+++..|.++|+...... .++..|-..+.+-.++..+..|..+|++.... +|--...|.--+.+=-..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHh
Confidence 3333333345677889999999988864 58889999999999999999999999998876 222234676777777778
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHH
Q 022531 93 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS 172 (295)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (295)
|++..|.++|++-.+ ..|+...|.+.|+.=.+-..++.|..++++..- +.|+...|--....-.++|+...|..
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~- 228 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARS- 228 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHH-
Confidence 999999999999887 589999999999999999999999999999884 46999999999999999999999999
Q ss_pred HHHHHHHhcCCC--ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH---HhHHHHHHHHHhcCChHHHHHH----
Q 022531 173 TLVEAEKSITQR--QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS---RNYICILSSYLMLGHLKEVGEI---- 243 (295)
Q Consensus 173 ~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~---- 243 (295)
+++...+..... +...+.++...-.++..++.|.-+|+-..+. -|.. ..|..+..-=-+-|+.......
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 888877654331 2344555555555678889999999877765 2333 3344444433345554333322
Q ss_pred ----HHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC
Q 022531 244 ----IDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290 (295)
Q Consensus 244 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 290 (295)
++.+.+.+ +.|-.+|--.++.-...|+.+...++|++.+. +++|
T Consensus 307 Rk~qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp 354 (677)
T KOG1915|consen 307 RKFQYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPP 354 (677)
T ss_pred hhhHHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCc
Confidence 34455544 45788898899999999999999999999986 4555
No 78
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=7.3e-07 Score=71.28 Aligned_cols=215 Identities=7% Similarity=-0.056 Sum_probs=155.9
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAK-WTEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
++..+-..+...++.++|+.+.+.+....| +..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 444555666778899999999999988877 6667887777777777 5799999999999875 456678887766666
Q ss_pred hcCCH--HHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---Cc
Q 022531 91 SVGQV--EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA---SH 165 (295)
Q Consensus 91 ~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 165 (295)
+.|.. ++++.+++++.+...+ |..+|+...-++.+.|+++++++.+.++.+. .+.+..+|+....++.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhcccccc
Confidence 66653 6788889888886543 7788888888888999999999999999885 245666777666665554 22
Q ss_pred h----hhHHHHHHHHHHHhcCCCccccHHHHHHHHHhc----CCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhc
Q 022531 166 L----VNAESSTLVEAEKSITQRQWITYDFLIILYAGL----GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 234 (295)
Q Consensus 166 ~----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 234 (295)
. ++..+ +...+....+ -|...|+-+...+... ++..+|.+++.+....+ ..+...+..|+..|+..
T Consensus 195 ~~~~~e~el~-y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 195 LEAMRDSELK-YTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccHHHHHH-HHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 3 34555 5555555554 3778888888777763 34466888887766543 33555677788888753
No 79
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=4.3e-08 Score=82.89 Aligned_cols=222 Identities=11% Similarity=-0.004 Sum_probs=155.0
Q ss_pred CCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022531 7 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 86 (295)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 86 (295)
++|-...=..+.+.+...|-...|..+|+.+. .|.-+|.+|+..|+..+|..+..+..++ +||+..|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 34444444567788888888999999888764 7888888888888888888888877774 57888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 022531 87 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
.......-+++|+++++..... +-..+.....+.++++++.+.|+.-.+- .+....+|-..-.+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhh
Confidence 8777777778888877764332 1122222233467778888777776653 244556677777777778888
Q ss_pred hhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
+.|.+ .|......- +.+...||++-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus 536 q~av~-aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVK-AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHH-HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 88777 666554433 2356778888888888888888888887777665 33444555666667777888888888777
Q ss_pred Hhh
Q 022531 247 WKQ 249 (295)
Q Consensus 247 ~~~ 249 (295)
+..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 755
No 80
>PF12854 PPR_1: PPR repeat
Probab=99.05 E-value=3.6e-10 Score=57.78 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022531 74 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105 (295)
Q Consensus 74 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 105 (295)
|++||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=1.4e-06 Score=73.18 Aligned_cols=172 Identities=11% Similarity=0.070 Sum_probs=104.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCC---------
Q 022531 116 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ--------- 183 (295)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------- 183 (295)
.|..+.+.|-..|+.+.|..+|++..+. ..+.- ..+|-.-..+-.+..+++.|.+ +......--..
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~-lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALK-LMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHH-HHHhhhcCCCchhhhhhcCC
Confidence 4666777788888888888888887764 22221 3445555555566677777777 54443221100
Q ss_pred --------CccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCC
Q 022531 184 --------RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 255 (295)
Q Consensus 184 --------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 255 (295)
.+...|+..++.--..|-++....+++++.+..+- ++.......-.+..+.-++++.++|++-..-.. .|
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk-~p 544 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFK-WP 544 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-Cc
Confidence 12234555555555677888888888888776643 222222233334455667778888877666443 24
Q ss_pred CH-HHHHHHHHHHHc---cCChHHHHHHHHHHHhcCCCCCC
Q 022531 256 DI-SACNRLLGAFSD---VGLTEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 256 ~~-~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~ 292 (295)
++ ..|+..+.-+.+ .-..+.|.++|++.++ |++|..
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 43 356666665554 2367888888888887 777753
No 82
>PF12854 PPR_1: PPR repeat
Probab=99.02 E-value=5.9e-10 Score=56.98 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHhccChhHHHHHHhhcc
Q 022531 5 KEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLP 38 (295)
Q Consensus 5 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 38 (295)
+|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4677888888888888888888888888887774
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.00 E-value=1.3e-07 Score=73.02 Aligned_cols=170 Identities=13% Similarity=0.067 Sum_probs=117.1
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--Hh
Q 022531 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI--FT 116 (295)
Q Consensus 42 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~ 116 (295)
.....+..++..+...|++++|...|+++.... +.+. .++..+..++.+.|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 466677777777778888888888888776653 2222 45667777778888888888888887764321111 13
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHhhcCCCCCCHHHH-----------------HHHHHHHHhcCchhhHHH
Q 022531 117 YNLWISSCAAT--------LNIDQVKKFLDEMSCDSGGSDDWVKY-----------------VNLVNIYITASHLVNAES 171 (295)
Q Consensus 117 ~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~ 171 (295)
+..+..++.+. |++++|.+.|+.+.... +.+...+ ..+...+.+.|++++|..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 44444444443 66777888888777641 2222111 245678899999999999
Q ss_pred HHHHHHHHhcCC-C-ccccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 172 STLVEAEKSITQ-R-QWITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 172 ~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
.+....+..+. | ....+..+..++...|+.++|..+++.+...
T Consensus 188 -~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 188 -RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888877653 2 3467889999999999999999999988765
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.99 E-value=2.8e-07 Score=71.11 Aligned_cols=190 Identities=12% Similarity=-0.007 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH-HHH
Q 022531 77 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW-VKY 153 (295)
Q Consensus 77 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 153 (295)
.....+..+...+...|++++|...|+++...... |. ..++..+..++.+.|++++|...++++.+.....|.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45677888888999999999999999998775321 11 2466778888999999999999999998752212221 245
Q ss_pred HHHHHHHHhc--------CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHH
Q 022531 154 VNLVNIYITA--------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225 (295)
Q Consensus 154 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 225 (295)
..+..++.+. |+.++|.+ .+..+....+. +...+..+..... . ..... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~p~-~~~~~~a~~~~~~----~------~~~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFE-AFQELIRRYPN-SEYAPDAKKRMDY----L------RNRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHH-HHHHHHHHCCC-ChhHHHHHHHHHH----H------HHHHH--------HHHH
Confidence 5555556554 67888888 77777665543 2222222211100 0 00000 0112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 226 CILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 226 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
.+...+.+.|++++|...++...+.....| ....+..+..++...|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 466778899999999999999987643222 3568889999999999999999999888764
No 85
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.99 E-value=2.7e-08 Score=85.81 Aligned_cols=217 Identities=11% Similarity=0.078 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 022531 41 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 120 (295)
Q Consensus 41 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 120 (295)
.|+..||.++|.-||..|+++.|- +|.-|.-..++.+...|+.++.+..+.++.+.+. .|...||..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 366667777777777777766666 6666666655566666666666666666665554 4566667777
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHH-HhcCCCccccHHHHHHHHHhc
Q 022531 121 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE-KSITQRQWITYDFLIILYAGL 199 (295)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~ 199 (295)
..+|...||... |+...+ -...+...+...|.-..... ++..+. ..+..||. .+.+.-....
T Consensus 90 l~ayr~hGDli~----fe~veq---------dLe~i~~sfs~~Gvgs~e~~-fl~k~~c~p~~lpda---~n~illlv~e 152 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL----FEVVEQ---------DLESINQSFSDHGVGSPERW-FLMKIHCCPHSLPDA---ENAILLLVLE 152 (1088)
T ss_pred HHHHHhccchHH----HHHHHH---------HHHHHHhhhhhhccCcHHHH-HHhhcccCcccchhH---HHHHHHHHHH
Confidence 777777666544 222221 11123333344444433333 222111 01111222 2333344556
Q ss_pred CCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 022531 200 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 279 (295)
Q Consensus 200 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 279 (295)
|-++.+++++..+-..... . ++...++-+.... .-..++....+.-.. .|+..+|..++++-..+|+.+.|..+
T Consensus 153 glwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHH
Confidence 6666666666544221110 1 1111233333322 233455544433222 58999999999999999999999999
Q ss_pred HHHHHhcCCCCCC
Q 022531 280 HMLLLQKNCAPTN 292 (295)
Q Consensus 280 ~~~m~~~g~~p~~ 292 (295)
+.+|+++|+..+.
T Consensus 227 l~emke~gfpir~ 239 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRA 239 (1088)
T ss_pred HHHHHHcCCCccc
Confidence 9999999997654
No 86
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=7.7e-07 Score=80.58 Aligned_cols=243 Identities=14% Similarity=0.117 Sum_probs=178.6
Q ss_pred HHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 022531 29 SGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF-----NALMYNEMMTLYMSVGQVEKVALVV 102 (295)
Q Consensus 29 ~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~~~~~~a~~~~ 102 (295)
.|.+ |+++....| +...|-..|......+++++|.+++++.+.. +.+ -...|.++++.-..-|.-+...++|
T Consensus 1443 saeD-ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAED-FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHH-HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 4444 444444456 6778999999999999999999999988754 222 2346888888777778888889999
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcC
Q 022531 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 182 (295)
Q Consensus 103 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (295)
+++.+. --.-..|..|...|.+.+++++|.++|+.|.+.. .....+|...+..+.+..+-+.|.. ++.+..+..+
T Consensus 1521 eRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~-lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1521 ERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARE-LLKRALKSLP 1595 (1710)
T ss_pred HHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHH-HHHHHHhhcc
Confidence 998874 1123458888889999999999999999999853 4677788899999999999999999 8888887776
Q ss_pred CCc-cccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCH-HHH
Q 022531 183 QRQ-WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI-SAC 260 (295)
Q Consensus 183 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~ 260 (295)
+.. .......+..-.+.|+.+.+..+|+.+..... --...|+.+|+.-.++|+.+.+..+|++....+...-.. ..|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 633 23334455556788999999999998876642 233568899999999999999999999998876532222 355
Q ss_pred HHHHHHHHccCChHHHHHH
Q 022531 261 NRLLGAFSDVGLTEKANEF 279 (295)
Q Consensus 261 ~~l~~~~~~~g~~~~a~~~ 279 (295)
...+.-=.+.|+-+.+..+
T Consensus 1675 KkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHhcCchhhHHHH
Confidence 6666555566765544443
No 87
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=1.3e-06 Score=79.20 Aligned_cols=203 Identities=8% Similarity=0.064 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHH
Q 022531 78 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-----IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK 152 (295)
Q Consensus 78 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (295)
+...|-.-|..+.+.++.++|.++.++.+.. +.+. ...|.++++.-...|.-+...++|+++.+- . ..-.+
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--c-d~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--C-DAYTV 1532 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--c-chHHH
Confidence 3445666666666666666666666665543 2221 124555555555555556666666666552 1 12334
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHH---hHHHHHH
Q 022531 153 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR---NYICILS 229 (295)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~ 229 (295)
|..|...|.+.+..++|-+ +++.|.+... .....|...+..+.++++-+.|.+++.+..+. -|-.. .....++
T Consensus 1533 ~~~L~~iy~k~ek~~~A~e-ll~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADE-LLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHhhcchhHHH-HHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 5566666666666666666 6666665544 24456666666666666666666666655443 23211 1223344
Q ss_pred HHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC
Q 022531 230 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290 (295)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 290 (295)
.-.+.|+.+++..+|+....... .-...|+..++.-.++|+.+.++.+|++....++.|
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayP--KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYP--KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCc--cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 44566666666666666665432 234456666666666666666666666666666554
No 88
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.92 E-value=9.2e-07 Score=78.74 Aligned_cols=231 Identities=11% Similarity=0.003 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
...+..|+..+...+++++|.++.+...+..| ....|-.+...+.+.++.+++..+ .++...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhhc
Confidence 45666788888888888888888886666666 344555555566666665554444 223333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhH
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (295)
....++..+.-+...|...+ -+...+..+..+|-+.|+.+++..+++++.+.. +.++.+.|.+...|+.. ++++|
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHH
Confidence 33344444444444454432 233467777888888888888888888888752 66777788888888877 88888
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHHH---H--HhcCCHHHHHHHHHHHHhc-cCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 022531 170 ESSTLVEAEKSITQRQWITYDFLIIL---Y--AGLGNKDKIDQIWKSLRMT-KQKMTSRNYICILSSYLMLGHLKEVGEI 243 (295)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~li~~---~--~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~ 243 (295)
.+ ++.+........ .-|+.+... + ....+++.-..+.+.+..+ |..--..++..+-..|-..++++++..+
T Consensus 169 ~~-m~~KAV~~~i~~--kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 169 IT-YLKKAIYRFIKK--KQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HH-HHHHHHHHHHhh--hcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 88 666555432110 011111110 1 1122333333444443332 2233334455566777788888888888
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHH
Q 022531 244 IDQWKQSATSDFDISACNRLLGAFS 268 (295)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (295)
++...+.. +.|.....-++.+|.
T Consensus 246 LK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcC--CcchhhHHHHHHHHH
Confidence 88888754 457777777777776
No 89
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=8.9e-06 Score=65.15 Aligned_cols=230 Identities=9% Similarity=-0.020 Sum_probs=165.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRKNVVPDIFTYNLWISSC 124 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 124 (295)
++..+-..+...++.++|+.+.+++++.. +-+..+|+..-.++...| ++++++..++++.+...+ +..+|+...-.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 45555556667788999999999999875 345567887777777777 689999999999987543 555677655555
Q ss_pred HccCCH--HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhc---
Q 022531 125 AATLNI--DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL--- 199 (295)
Q Consensus 125 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 199 (295)
.+.|+. ++++.+++.+... .+-+..+|+...-++.+.|+++++++ .+.++.+..+. |...|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~-~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELE-YCHQLLEEDVR-NNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHCCC-chhHHHHHHHHHHhcccc
Confidence 566653 6788889888874 46788899999999999999999999 89988887655 667787766555443
Q ss_pred CCH----HHHHHHHHHHHhccCCCCHHhHHHHHHHHHhc----CChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccC
Q 022531 200 GNK----DKIDQIWKSLRMTKQKMTSRNYICILSSYLML----GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG 271 (295)
Q Consensus 200 g~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 271 (295)
|.. ++.+++........ +-|...|+.+...+... +...+|.+++.+..... ..+......|++.|+...
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFALSDLLDLLCEGL 269 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHHHHHHHHHHHHhhh
Confidence 222 45666766665543 33556677777777663 34456888888876643 356778888999998632
Q ss_pred ------------------ChHHHHHHHHHHH
Q 022531 272 ------------------LTEKANEFHMLLL 284 (295)
Q Consensus 272 ------------------~~~~a~~~~~~m~ 284 (295)
..++|.+++..+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 270 QPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2367888888873
No 90
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.4e-06 Score=67.30 Aligned_cols=262 Identities=10% Similarity=-0.011 Sum_probs=180.7
Q ss_pred HHHHHHHHHhc--cChhHHHH--HHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 022531 14 YATRIDLMTKV--FGIHSGER--YFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN-ALMYNEMMT 87 (295)
Q Consensus 14 ~~~li~~~~~~--~~~~~A~~--~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~ 87 (295)
...-+.+++.+ ++-..|.. +|-+....-| |+.....+...+...|+.++|...|++....+ |+ ......-..
T Consensus 197 ls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~ 274 (564)
T KOG1174|consen 197 LSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAV 274 (564)
T ss_pred HHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHH
Confidence 33444444443 33333333 3434343345 88899999999999999999999999888764 32 222233333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 88 LYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
.+.+.|+++....+...+.... +-+...|..-.......++++.|+.+-++.++. .+.+...|-.-...+...++.+
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchH
Confidence 4567889999888888887642 234445655566666788999999999888874 3455666666667788899999
Q ss_pred hHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHH-HHHH-hcCChHHHHHHHH
Q 022531 168 NAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL-SSYL-MLGHLKEVGEIID 245 (295)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~-~~~~~~~A~~~~~ 245 (295)
+|.- .|.....-- +-+...|.-|+..|...|++.+|..+-+..... +.-+..+...+. ..+. ...--++|.++++
T Consensus 352 ~A~I-aFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 352 QAVI-AFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHH-HHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9887 677654433 347789999999999999999998877665443 234555555442 2232 2334577899998
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 246 QWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.-.+.. +.-....+.+...|...|..+.+..++++.+.
T Consensus 429 k~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 429 KSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred hhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 877643 22355677888999999999999999998765
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.88 E-value=1.1e-07 Score=67.04 Aligned_cols=108 Identities=5% Similarity=-0.191 Sum_probs=66.8
Q ss_pred HHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 022531 32 RYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV 111 (295)
Q Consensus 32 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 111 (295)
.+|+......|+. +..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++....+.
T Consensus 14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p- 89 (144)
T PRK15359 14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA- 89 (144)
T ss_pred HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-
Confidence 3444444433432 3345666666677777777777666654 44566666677777777777777777777666432
Q ss_pred CChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 112 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 112 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.+..++..+..++...|++++|...|+.....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 25566666666666777777777777766653
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=3.9e-07 Score=75.31 Aligned_cols=226 Identities=12% Similarity=-0.015 Sum_probs=167.7
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCH
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 130 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 130 (295)
..-+.+.|++.+|.-+|+...+.+ |-+...|.-|.......++-..|+..+++..+.... |....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 344567899999999999998886 557889999999999999999999999999886332 567788888889999998
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHH-----HH--HHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHH
Q 022531 131 DQVKKFLDEMSCDSGGSDDWVKYVN-----LV--NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD 203 (295)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~~-----l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 203 (295)
.+|++.|+.-... . +|-...-.+ .. ..+.....+....+++++........+|......|...|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~-~-p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRN-K-PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHh-C-ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999988875442 1 111000000 00 1111222333444423333334443467778888988999999999
Q ss_pred HHHHHHHHHHhccCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHH
Q 022531 204 KIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD-ISACNRLLGAFSDVGLTEKANEFHM 281 (295)
Q Consensus 204 ~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 281 (295)
+|...|+..... +|+ ...||.|...++...+.++|+..|++.++- +|+ +++...|.-+|...|.+++|...|-
T Consensus 448 raiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 448 RAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL---QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999988775 554 567999999999999999999999999883 344 5677778889999999999999887
Q ss_pred HHHh
Q 022531 282 LLLQ 285 (295)
Q Consensus 282 ~m~~ 285 (295)
..+.
T Consensus 523 ~AL~ 526 (579)
T KOG1125|consen 523 EALS 526 (579)
T ss_pred HHHH
Confidence 7654
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.2e-06 Score=66.90 Aligned_cols=270 Identities=9% Similarity=-0.040 Sum_probs=170.0
Q ss_pred CCCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 022531 5 KEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYN 83 (295)
Q Consensus 5 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 83 (295)
.+...-..-+++.+..+.+..++..|++++....+..| +....+.|..+|-...++..|-.+++++...- |...-|.
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYr 81 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYR 81 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHH
Confidence 44455555688889999999999999999988888767 88899999999999999999999999987753 4444433
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHHHhC------------------C----------CCC---ChHhHHHHHHHHHccCCHH
Q 022531 84 E-MMTLYMSVGQVEKVALVVEEIKRK------------------N----------VVP---DIFTYNLWISSCAATLNID 131 (295)
Q Consensus 84 ~-li~~~~~~~~~~~a~~~~~~m~~~------------------~----------~~p---~~~~~~~li~~~~~~~~~~ 131 (295)
. -...+.+.+.+..|+++...|... + ..| +..+.+.......+.|+++
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHH
Confidence 1 233455566666777666655442 0 011 1112222222234667888
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC-------------ccc--------cHH
Q 022531 132 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-------------QWI--------TYD 190 (295)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~--------~~~ 190 (295)
.|.+-|+...+-+|..|- .+|+..+.. -+.|+++.|.+ ...++.+.|++. |+. .-+
T Consensus 162 aAvqkFqaAlqvsGyqpl-lAYniALaH-y~~~qyasALk-~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPL-LAYNLALAH-YSSRQYASALK-HISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHhhcCCCch-hHHHHHHHH-HhhhhHHHHHH-HHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 888888888776666553 456554443 46678888888 777777766542 110 112
Q ss_pred HHHHH-------HHhcCCHHHHHHHHHHHHhc-cCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHH
Q 022531 191 FLIIL-------YAGLGNKDKIDQIWKSLRMT-KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 262 (295)
Q Consensus 191 ~li~~-------~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 262 (295)
.++.+ +.+.|+++.|.+-+..|--. ....|+.|...+.-.-. .+++.+..+-+.-+..... -...||..
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP--fP~ETFAN 315 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP--FPPETFAN 315 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC--CChHHHHH
Confidence 23332 34667777777777766321 12445566554332222 2333333444444444333 23567888
Q ss_pred HHHHHHccCChHHHHHHHHH
Q 022531 263 LLGAFSDVGLTEKANEFHML 282 (295)
Q Consensus 263 l~~~~~~~g~~~~a~~~~~~ 282 (295)
++-.||+..-++.|.+++.+
T Consensus 316 lLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhh
Confidence 89999999999988888754
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.86 E-value=2.1e-07 Score=69.34 Aligned_cols=152 Identities=8% Similarity=0.008 Sum_probs=109.3
Q ss_pred HHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 96 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 96 (295)
-+-.|...|+++.+....+.+.. |. . .+...++.+++...+++..+.+ +.|...|..|...|...|+++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~--~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD--PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC--cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 44567788888887655543322 11 0 1123666778888888777765 567888888888888889999
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHH-HHccCC--HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHH
Q 022531 97 KVALVVEEIKRKNVVPDIFTYNLWISS-CAATLN--IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESST 173 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (295)
+|...|++..+.... +...+..+..+ +...|+ .++|.+++++..+. .+.+..++..+...+.+.|++++|.. .
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~-~ 166 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIE-L 166 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHH-H
Confidence 999988888886432 56667766665 356666 48888888888874 35567778888888888899999988 8
Q ss_pred HHHHHHhcCC
Q 022531 174 LVEAEKSITQ 183 (295)
Q Consensus 174 ~~~~~~~~~~ 183 (295)
++++.+..+.
T Consensus 167 ~~~aL~l~~~ 176 (198)
T PRK10370 167 WQKVLDLNSP 176 (198)
T ss_pred HHHHHhhCCC
Confidence 8888776654
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=1.3e-06 Score=65.55 Aligned_cols=160 Identities=12% Similarity=0.019 Sum_probs=104.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 022531 83 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 162 (295)
Q Consensus 83 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (295)
..+-..+.-.|+-+....+..+..... .-|.......+....+.|++.+|...+.+... .-++|+.+|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 555566666677676666666654431 22444555567777777777777777777776 456777777777777777
Q ss_pred cCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHH
Q 022531 163 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGE 242 (295)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 242 (295)
.|+.++|.. -+.+..+-.+. +....+.|.-.+.-.|+.+.|..++......+. -+...-..+.-+....|++++|..
T Consensus 147 ~Gr~~~Ar~-ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 147 LGRFDEARR-AYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ccChhHHHH-HHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHh
Confidence 777777777 66666554433 445667777777777777777777777666542 244445556666677777777777
Q ss_pred HHHHHh
Q 022531 243 IIDQWK 248 (295)
Q Consensus 243 ~~~~~~ 248 (295)
+...-.
T Consensus 224 i~~~e~ 229 (257)
T COG5010 224 IAVQEL 229 (257)
T ss_pred hccccc
Confidence 665543
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.83 E-value=2.1e-05 Score=67.52 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=65.2
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCCH-HhHHHHHHHHHhcCChHHHHH--HHHHHhhhcCCCCCHHHHHHHHHHHHccCCh
Q 022531 197 AGLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGE--IIDQWKQSATSDFDISACNRLLGAFSDVGLT 273 (295)
Q Consensus 197 ~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 273 (295)
...|.+++|.+.|...... .|+. ...+++..++.+.|+...|.. ++..+.+-+ +.+...|..+...+.+.|+.
T Consensus 695 ~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccch
Confidence 3455666666666554443 4443 456788889999998888888 888888865 56888999999999999999
Q ss_pred HHHHHHHHHHHh
Q 022531 274 EKANEFHMLLLQ 285 (295)
Q Consensus 274 ~~a~~~~~~m~~ 285 (295)
+.|-+.|.-..+
T Consensus 771 ~~Aaecf~aa~q 782 (799)
T KOG4162|consen 771 KQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=7.5e-07 Score=66.74 Aligned_cols=165 Identities=12% Similarity=0.010 Sum_probs=132.3
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
|..+ ..+-..+...|+-+....+........ +-|....+..+....+.|++..|+..|++..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 5555 666777778888888888887755442 4466677779999999999999999999988763 468899999999
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCH
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 202 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 202 (295)
+|.+.|++++|..-|.+..+- .+.+...++.+.-.+.-.|+++.|.. ++......... |...-..+.......|++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~-lll~a~l~~~a-d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAET-LLLPAYLSPAA-DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHH-HHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence 999999999999999998874 45667778899999999999999999 77776665543 666777788888999999
Q ss_pred HHHHHHHHHHHh
Q 022531 203 DKIDQIWKSLRM 214 (295)
Q Consensus 203 ~~a~~~~~~m~~ 214 (295)
++|..+...-..
T Consensus 219 ~~A~~i~~~e~~ 230 (257)
T COG5010 219 REAEDIAVQELL 230 (257)
T ss_pred HHHHhhcccccc
Confidence 999988775443
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=3e-07 Score=78.00 Aligned_cols=192 Identities=15% Similarity=0.047 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
...|.-+|.+|...|+-.+|..+..+..++.||+..|..+++......-+++|.++++....+ +-..+.....
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 456778899999999999999999888887889999999999998888899999999876543 1122222234
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHH
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 170 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (295)
+.++++++.+.|+.-.+.+. .-..+|.....+..+.++++.|.+.|..... +-+.+...||.+-.+|.+.++..+|.
T Consensus 497 ~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred cchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHH
Confidence 47899999999998776432 3467888888889999999999999999887 45667789999999999999999999
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 171 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 214 (295)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 214 (295)
. .+.+..+.. ..+...|-+.+......|.+++|++.+.++.+
T Consensus 574 ~-~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 574 R-KLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred H-HHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9 888887776 45677788888888999999999999998754
No 99
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.7e-05 Score=62.28 Aligned_cols=158 Identities=10% Similarity=0.020 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHH
Q 022531 130 IDQVKKFLDEMSCDSGGSDD-WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQI 208 (295)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 208 (295)
..-|.+.|+-.-.. +...| ..--.++..++.-..++|+..- ++..+..-....|...+ .+.++++..|++.+|+++
T Consensus 339 lKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~-YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 339 LKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLT-YLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHH
Confidence 44455555444333 22222 2223355555666667777777 67766666665555444 467888999999999999
Q ss_pred HHHHHhccCCCCHHhHH-HHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 022531 209 WKSLRMTKQKMTSRNYI-CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN 287 (295)
Q Consensus 209 ~~~m~~~~~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 287 (295)
|-+.....++ |..+|. .|.++|.+.+.++.|+.++-.+... .........+..-|-+.+++--|.+.|+.+...+
T Consensus 416 f~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 416 FIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 9877655544 455665 5788999999999998887654321 1123344556677888999999999999988876
Q ss_pred CCCCCCC
Q 022531 288 CAPTNAS 294 (295)
Q Consensus 288 ~~p~~~t 294 (295)
-.|....
T Consensus 492 P~pEnWe 498 (557)
T KOG3785|consen 492 PTPENWE 498 (557)
T ss_pred CCccccC
Confidence 6666554
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=1.3e-05 Score=74.37 Aligned_cols=270 Identities=12% Similarity=0.058 Sum_probs=176.6
Q ss_pred HHHHHHhccChhHHHHHHhhcccCCC--C----HHHHHHHHHHHHccCcHHHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSAK--T----SETYTALLHLYAGAKWTEKAEELFERVKQS----NL-SFNALMYNEM 85 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~p--~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~l 85 (295)
+...+...|++++|...++......+ + ....+.+...+...|++++|...+++.... |- .+...++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 33455678999999999988655322 2 234566777788899999999999887642 21 0112345666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhc---CCCCCCHHHHHH
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRK----NVV--P-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSDDWVKYVN 155 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ 155 (295)
...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... .+.......+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 77888999999999998876542 221 1 2233445556677789999999998886542 111112334555
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHhcCCCc-cccHH-----HHHHHHHhcCCHHHHHHHHHHHHhccCCCCH---HhHHH
Q 022531 156 LVNIYITASHLVNAESSTLVEAEKSITQRQ-WITYD-----FLIILYAGLGNKDKIDQIWKSLRMTKQKMTS---RNYIC 226 (295)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ 226 (295)
+...+...|+.++|.+ .+........... ...+. ..+..+...|+.+.|.+++............ ..+..
T Consensus 618 la~~~~~~G~~~~A~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 618 LAKISLARGDLDNARR-YLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHcCCHHHHHH-HHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 6677888999999999 7777654322111 11111 1223445688999999998765442211111 11345
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhhc---CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 022531 227 ILSSYLMLGHLKEVGEIIDQWKQSA---TSDF-DISACNRLLGAFSDVGLTEKANEFHMLLLQKN 287 (295)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 287 (295)
+..++...|+.++|...+++..... ...+ ...+...+..++...|+.++|...+.+..+..
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6777889999999999999876531 1111 23456677788899999999999999987643
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=4.2e-07 Score=64.12 Aligned_cols=93 Identities=8% Similarity=-0.115 Sum_probs=44.2
Q ss_pred HHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 022531 14 YATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV 92 (295)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 92 (295)
+..+...+...|++++|...|+......| +...|..+..++...|++++|...|++....+ +.+..++..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 33344444444555555555544444433 44444444444555555555555555444433 23444444444445555
Q ss_pred CCHHHHHHHHHHHHh
Q 022531 93 GQVEKVALVVEEIKR 107 (295)
Q Consensus 93 ~~~~~a~~~~~~m~~ 107 (295)
|++++|+..|+...+
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555544444
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=5.5e-06 Score=61.77 Aligned_cols=120 Identities=9% Similarity=-0.017 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HhcCc--hhh
Q 022531 92 VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY-ITASH--LVN 168 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~ 168 (295)
.++.+++...+++..+.+. .|...|..+...|...|++++|...|++.... .+.+..++..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4555666666666555432 35666777777777777777777777776663 244555666666653 45555 366
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 022531 169 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 216 (295)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 216 (295)
|.+ ++++..+..+. +..++..+...+...|++++|+..|+++.+..
T Consensus 129 A~~-~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TRE-MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHH-HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666 66666555544 55566666666667777777777777666553
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=5.4e-06 Score=73.05 Aligned_cols=134 Identities=9% Similarity=0.008 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHH
Q 022531 76 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 154 (295)
Q Consensus 76 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (295)
+.++..+-.|.....+.|.+++|..+++...+. .|| ......+...+.+.+++++|+..+++.... -+.+.....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 344555555666666666666666666665553 333 334455555556666666666666665552 234444555
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 155 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
.+..++.+.|++++|.. +|+++...++ .+..++..+..++-..|+.++|...|+...+.
T Consensus 159 ~~a~~l~~~g~~~~A~~-~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADA-CFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHH-HHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555666666666666 5555555222 13445555555555666666666666555443
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=1.5e-06 Score=76.43 Aligned_cols=146 Identities=14% Similarity=0.048 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 022531 7 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM 85 (295)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 85 (295)
+..++..+-.|.....+.|.+++|..+++...+..| +......++..+.+.+++++|+...++....+ +-+....+.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 344577888899999999999999999999999888 67788889999999999999999999999886 4566778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 156 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 156 (295)
..++.+.|++++|..+|+++...+. -+..++..+..++-..|+.++|...|++..+. ..+....|+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHH
Confidence 8899999999999999999998432 24778888999999999999999999998774 23444554433
No 105
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.73 E-value=5.8e-05 Score=63.83 Aligned_cols=260 Identities=9% Similarity=0.029 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAK---TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
.|-.-+..+.++|++..-...|+.....-| -..+|...+...-..+-++-+.+++++.++. ++..-+.-|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 344445556666777777777766555433 2346666666666667777777777776655 244456666667
Q ss_pred HhcCCHHHHHHHHHHHHhC----------------------------------------C--CCCC--hHhHHHHHHHHH
Q 022531 90 MSVGQVEKVALVVEEIKRK----------------------------------------N--VVPD--IFTYNLWISSCA 125 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~----------------------------------------~--~~p~--~~~~~~li~~~~ 125 (295)
+..+++++|.+.+...... | .-+| ...|.+|.+-|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 7777777766665543321 1 1122 245777888888
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHH----------------H-----HHHHHHHhc---
Q 022531 126 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES----------------S-----TLVEAEKSI--- 181 (295)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----------------~-----~~~~~~~~~--- 181 (295)
+.|++++|..+|++.... ..+..-++.+.++|+.-..-.-+.. + .++.+....
T Consensus 260 r~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 888888888888876654 2333334444444443211111111 0 111111111
Q ss_pred --------CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC------HHhHHHHHHHHHhcCChHHHHHHHHHH
Q 022531 182 --------TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT------SRNYICILSSYLMLGHLKEVGEIIDQW 247 (295)
Q Consensus 182 --------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~~ 247 (295)
.+.++..|..-+. ...|+..+....+.+.... +.|- ...|..+.+.|-..|+++.|..+|++.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 1112223322222 2346666777777766543 2222 234778889999999999999999998
Q ss_pred hhhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 248 KQSATSDFDI----SACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 248 ~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
.+... +.+ .+|..-...=.++.+++.|+.+.++..
T Consensus 414 ~~V~y--~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 414 TKVPY--KTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred hcCCc--cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 77432 333 355555566667888888888887765
No 106
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=2e-05 Score=64.37 Aligned_cols=201 Identities=13% Similarity=0.040 Sum_probs=127.0
Q ss_pred cChhHHHHHHhhcccC----CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 022531 25 FGIHSGERYFEGLPLS----AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 100 (295)
Q Consensus 25 ~~~~~A~~~~~~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 100 (295)
.++..+...-+.++.. .|+...+...+.+......-..+-.++-+-.+.+ -...+......+...|++++|++
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~aa~YG~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG---GLAAQYGRALQTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc---chHHHHHHHHHHHHhcccchHHH
Confidence 3455556566666554 3566667777666555444444444443333311 23333344444566788888888
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Q 022531 101 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 180 (295)
Q Consensus 101 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (295)
.++.+... .+-|...+......+.+.++.++|.+.++.+... .+......-.+..+|.+.|++.+|.. .++.....
T Consensus 328 ~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~-~L~~~~~~ 403 (484)
T COG4783 328 LLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR-ILNRYLFN 403 (484)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH-HHHHHhhc
Confidence 88887765 2234555556666778888888888888888764 22335566677788888888888888 66665554
Q ss_pred cCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 181 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 181 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
.+. |...|..|.++|...|+..++..-.. ..|...|+++.|...+....+..
T Consensus 404 ~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 404 DPE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhc
Confidence 433 67788888888888887777655443 33455677777777777766643
No 107
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.70 E-value=7.7e-05 Score=63.04 Aligned_cols=62 Identities=18% Similarity=0.096 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 022531 224 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN 287 (295)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 287 (295)
+-.++..+-+.|+++.|..+++....+. +.-+..|..=.+.+...|++++|..++++..+.+
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 3457788889999999999999887753 2234456555677888999999999998887643
No 108
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.70 E-value=2.9e-08 Score=51.50 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=30.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC
Q 022531 259 ACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 292 (295)
+|++++.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6889999999999999999999999999999874
No 109
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.70 E-value=3.8e-05 Score=64.84 Aligned_cols=260 Identities=13% Similarity=0.068 Sum_probs=147.7
Q ss_pred HHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 022531 21 MTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 99 (295)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 99 (295)
+...|+-++|......-....+ +.+.|+.+.-.+-...++++|+..|......+ +-|...|..|...-++.++++...
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3445666666666665555443 66777777777777777777777777777664 446667776666667777777777
Q ss_pred HHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH------HHHHhcCchhhHHHH
Q 022531 100 LVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV------NIYITASHLVNAESS 172 (295)
Q Consensus 100 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~a~~~ 172 (295)
....++.+. .|+ -..|..+..+..-.|++..|..++++..+.....|+...|.... ....+.|..+.|.+
T Consensus 130 ~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale- 206 (700)
T KOG1156|consen 130 ETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE- 206 (700)
T ss_pred HHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH-
Confidence 766666664 233 34466667777777888888888888776533456666554333 23345666677766
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHH-HHHHHHhcCChHHHH-HHHHHHhhh
Q 022531 173 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC-ILSSYLMLGHLKEVG-EIIDQWKQS 250 (295)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~A~-~~~~~~~~~ 250 (295)
-+......... ....-..-...+.+.+++++|..++..+... .||..-|.. +..++..-.+.-++. .+|....+.
T Consensus 207 ~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 207 HLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 44333222211 1112223344567788888888888888776 566665554 444443222322333 555554432
Q ss_pred cCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHhcCCCC
Q 022531 251 ATSDFDISACNRLLGAFSD-VGLTEKANEFHMLLLQKNCAP 290 (295)
Q Consensus 251 ~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~g~~p 290 (295)
. |-...-..+--.... ..-.+....++..++++|++|
T Consensus 284 y---~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 284 Y---PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred C---cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 1 111111111111111 222333445666667777654
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.66 E-value=2e-05 Score=70.52 Aligned_cols=217 Identities=12% Similarity=0.055 Sum_probs=148.9
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA-LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 121 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 121 (295)
+...|..|+..+...+++++|.++.+...+.. |+. ..|-.+...+.+.++..++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 67889999999999999999999999777653 443 3444444456666664444433 344
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCC
Q 022531 122 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 201 (295)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 201 (295)
.......++.....+...+... ..+..++..+..+|-+.|+.++|.. +++++.+..+ .|..+.|.+...|+.. +
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~-~yer~L~~D~-~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKG-VWERLVKADR-DNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHH-HHHHHHhcCc-ccHHHHHHHHHHHHHh-h
Confidence 4444455554444444455543 3455578899999999999999999 9999988774 4888999999999999 9
Q ss_pred HHHHHHHHHHHHhccCCCCHHhHHHHHH---HHH--hcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHH
Q 022531 202 KDKIDQIWKSLRMTKQKMTSRNYICILS---SYL--MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 276 (295)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~~~~~~~~li~---~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 276 (295)
.++|++++.+....-+ +..-|+.+.. -++ ...+++.-.++.+.+...-....-+.++..+...|...++++++
T Consensus 165 L~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 165 KEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 9999999998766522 1112222222 111 22344455555555554433334456677777889999999999
Q ss_pred HHHHHHHHhc
Q 022531 277 NEFHMLLLQK 286 (295)
Q Consensus 277 ~~~~~~m~~~ 286 (295)
..+++.+++.
T Consensus 243 i~iLK~iL~~ 252 (906)
T PRK14720 243 IYILKKILEH 252 (906)
T ss_pred HHHHHHHHhc
Confidence 9999999873
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=2.5e-06 Score=59.63 Aligned_cols=108 Identities=14% Similarity=-0.015 Sum_probs=69.4
Q ss_pred HhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 022531 34 FEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP 112 (295)
Q Consensus 34 ~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 112 (295)
|+......| +......+...+...|++++|.+.|+.....+ +.+...|..+...+...|++++|...+++..+.+ +.
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~ 83 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PD 83 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 333344444 44556666666777777777777777766654 3456667777777777777777777777766543 22
Q ss_pred ChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 113 DIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 113 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
+...+..+...+...|++++|...|+...+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555666666677777777777777776654
No 112
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.64 E-value=5.4e-08 Score=50.06 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC
Q 022531 258 SACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290 (295)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 290 (295)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888887
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=9.5e-05 Score=60.54 Aligned_cols=220 Identities=12% Similarity=-0.016 Sum_probs=141.1
Q ss_pred HHHHHhccC-hhHHHHHHhhcccC-----CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 022531 18 IDLMTKVFG-IHSGERYFEGLPLS-----AKTSETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLY 89 (295)
Q Consensus 18 i~~~~~~~~-~~~A~~~~~~~~~~-----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~ 89 (295)
+..+.+.|. .....++|+.+... .|... ++.-=.-..++..+...-+.++..+ -.|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 344555554 45555677776631 12211 1111122345666666666666432 245666667777665
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhH
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (295)
.....-..+-.++-+..+. .-...-|..- -.+...|+++.|+..+..+.. ..|.|+.......+.+.+.++..+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A 359 (484)
T COG4783 285 YEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEA 359 (484)
T ss_pred hccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHH
Confidence 5444333333333322221 1122224433 345577889999999999887 3566777777888889999999999
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 170 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
.+ .++.+....+.. ...+-.+..++.+.|++.+|+.+++...... +-|+..|..|.++|...|+..+|.....+...
T Consensus 360 ~e-~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 360 IE-RLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HH-HHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99 888877766542 5666778888899999999999998876654 55677888899999999998888887776544
No 114
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.63 E-value=7.6e-08 Score=49.85 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD 113 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 113 (295)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=1.7e-06 Score=60.48 Aligned_cols=107 Identities=10% Similarity=-0.010 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
......+...+...|++++|.+.|+.+....| +...|..+...+...|++++|...++.....+ +.+..++..+...|
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34566677888899999999999999888766 78899999999999999999999999988875 56788888999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 120 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 120 (295)
...|++++|.+.|+...+. .|+...+..+
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 9999999999999999885 4555544433
No 116
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.60 E-value=2.9e-06 Score=69.38 Aligned_cols=127 Identities=14% Similarity=0.158 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
+-..-..|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|++++.+..+.. +-+......-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44555667777777888888888888888775 44 34457777777888888888888887652 235666666677
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHH
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA 177 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (295)
.+.+.++++.|+++.+++... .|.+-.+|..|..+|.+.|+++.|+. .++.+
T Consensus 243 fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALl-aLNs~ 294 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALL-ALNSC 294 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHH-HHhcC
Confidence 788888888888888888874 34455688888888888888888887 66644
No 117
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.57 E-value=1.1e-07 Score=48.80 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP 112 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 112 (295)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=2.2e-05 Score=59.23 Aligned_cols=195 Identities=12% Similarity=0.023 Sum_probs=134.8
Q ss_pred CCHHHHHHHHHHHHhccChhHH-HHHHhhcccCCC-CHHHHHH-HHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 022531 9 LSDSDYATRIDLMTKVFGIHSG-ERYFEGLPLSAK-TSETYTA-LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM 85 (295)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A-~~~~~~~~~~~p-~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 85 (295)
|.......+-.....-++.+.- .++.+++....- +..++.. -...|+..|++++|++..... . +....-.=
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~----~lE~~Al~ 143 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--E----NLEAAALN 143 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--c----hHHHHHHH
Confidence 3334444444444445554433 345555555422 3323333 356788999999999998762 1 23344344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 161 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (295)
...+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+....|.-+|++|-. ..+|++.+.+-...++.
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHH
Confidence 45667788899999999999984 356777777777654 4578999999999987 46899999999999999
Q ss_pred hcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCH-HHHHHHHHHHHhcc
Q 022531 162 TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK-DKIDQIWKSLRMTK 216 (295)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~ 216 (295)
..|++++|.. +++....+..+ +..+...+|..-...|.. +...+.+.+++...
T Consensus 219 ~~~~~eeAe~-lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 219 QLGRYEEAES-LLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HhcCHHHHHH-HHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 9999999999 88888776654 556666666555566654 55567778877653
No 119
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.56 E-value=0.00022 Score=66.28 Aligned_cols=269 Identities=8% Similarity=-0.119 Sum_probs=162.0
Q ss_pred HHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 022531 15 ATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 94 (295)
Q Consensus 15 ~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 94 (295)
......+...|++.+|............-..............|+++.+...++.+.......+..........+...|+
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 33445556667777666655544332111112222334455678888877777765322111122233445556677899
Q ss_pred HHHHHHHHHHHHhCC--C----CCCh--HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHh
Q 022531 95 VEKVALVVEEIKRKN--V----VPDI--FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD----WVKYVNLVNIYIT 162 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~--~----~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 162 (295)
++++..++.+....- . .+.. .....+...+...|++++|...+++...... ..+ ....+.+...+..
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHH
Confidence 999999998775421 0 1111 1222233445678999999999998765311 111 1344566677788
Q ss_pred cCchhhHHHHHHHHHHHhcCC---Cc--cccHHHHHHHHHhcCCHHHHHHHHHHHHhc----cCC--C-CHHhHHHHHHH
Q 022531 163 ASHLVNAESSTLVEAEKSITQ---RQ--WITYDFLIILYAGLGNKDKIDQIWKSLRMT----KQK--M-TSRNYICILSS 230 (295)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~---~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~ 230 (295)
.|++++|.. .+.+....... +. ..+...+...+...|++++|.+.+++.... +.. + ....+..+...
T Consensus 504 ~G~~~~A~~-~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 504 KGELARALA-MMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred cCCHHHHHH-HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 999999999 77776543221 11 234455666788899999999998876442 211 1 12234455666
Q ss_pred HHhcCChHHHHHHHHHHhhhcC---CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 231 YLMLGHLKEVGEIIDQWKQSAT---SDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+...|++++|...+++...... .......+..+...+...|+.+.|.+.+.+...
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7778999999999988755211 111234455566778889999999998888754
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=3.4e-05 Score=59.24 Aligned_cols=232 Identities=13% Similarity=0.043 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHHHhCC--------------
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTAL-LHLYAGAKWTEKAEELFERVKQSN-------------- 74 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~-------------- 74 (295)
+....+.|...|-...++..|-..++++....|...-|... ...+-+++.+.+|+++...|....
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK 122 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 55667778888888899999999999988877765554432 345556677777777776664311
Q ss_pred -----C------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHH
Q 022531 75 -----L------------SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFL 137 (295)
Q Consensus 75 -----~------------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 137 (295)
+ .-+..+.+...-...+.|+++.|++-|+...+-+--.....|+..+.. .+.|+++.|++..
T Consensus 123 Yse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~i 201 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHI 201 (459)
T ss_pred cccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHH
Confidence 0 012333444444556889999999999998875433356788876644 5678999999999
Q ss_pred HHHhhcCCCC-------------CCH--------HHHHHHHH-------HHHhcCchhhHHHHHHHHHH-HhcCCCcccc
Q 022531 138 DEMSCDSGGS-------------DDW--------VKYVNLVN-------IYITASHLVNAESSTLVEAE-KSITQRQWIT 188 (295)
Q Consensus 138 ~~~~~~~~~~-------------~~~--------~~~~~l~~-------~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ 188 (295)
.++..+ |++ ||. -.-+.++. .+-+.|+.+.|.+ .+..|- ......|.+|
T Consensus 202 SEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e-aLtDmPPRaE~elDPvT 279 (459)
T KOG4340|consen 202 SEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE-ALTDMPPRAEEELDPVT 279 (459)
T ss_pred HHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH-HhhcCCCcccccCCchh
Confidence 988876 432 111 11223333 3456778887777 333331 1112346677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 189 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 189 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
...+.-. -..+++.+..+-+.-+.... +....||..++-.||+..-++.|-.++.+
T Consensus 280 LHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 280 LHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 7665432 23455555666566665554 34567899999999999999999888876
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.53 E-value=9.8e-06 Score=57.38 Aligned_cols=114 Identities=13% Similarity=0.087 Sum_probs=50.0
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--HhHHHHHHHHHccCCHH
Q 022531 57 AKWTEKAEELFERVKQSNLSFNA---LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI--FTYNLWISSCAATLNID 131 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~ 131 (295)
.++...+...++.+.... +.+. ...-.+...+...|++++|...|+........|+. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 445555555555555432 1111 12222334445555555555555555554322211 12222344445555555
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHH
Q 022531 132 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV 175 (295)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (295)
+|+..++..... ......+.....+|.+.|++++|.. .|+
T Consensus 103 ~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~-~y~ 142 (145)
T PF09976_consen 103 EALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARA-AYQ 142 (145)
T ss_pred HHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHH-HHH
Confidence 555555443221 2233344445555555555555555 443
No 122
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.52 E-value=1.6e-06 Score=71.24 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=95.4
Q ss_pred CCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCC----CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHH
Q 022531 6 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA----KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM 81 (295)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 81 (295)
+.+.++.+...+++.+....+++.+..++-...... --..|.+++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 445677777778888888888888888877776652 1244566888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHcc
Q 022531 82 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT 127 (295)
Q Consensus 82 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 127 (295)
+|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887777666777777777776655
No 123
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.52 E-value=2.6e-06 Score=55.41 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=60.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCChHh
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSNL-SFNALMYNEMMTLYMSVG--------QVEKVALVVEEIKRKNVVPDIFT 116 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~p~~~~ 116 (295)
+-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-+.+.+|++|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556666677888888888888888888 788888888888776653 23456778888888888888888
Q ss_pred HHHHHHHHHc
Q 022531 117 YNLWISSCAA 126 (295)
Q Consensus 117 ~~~li~~~~~ 126 (295)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=0.00017 Score=54.17 Aligned_cols=189 Identities=13% Similarity=0.134 Sum_probs=140.6
Q ss_pred ccCcHHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH-HHHHHccCC
Q 022531 56 GAKWTEKAEELFERVKQ---SN-LSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW-ISSCAATLN 129 (295)
Q Consensus 56 ~~~~~~~a~~~~~~m~~---~~-~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~~~ 129 (295)
...+.++.++++.+++. .| ..|+.. .|..++-+....|+.+.|...++++... . |...-...+ .-.+-..|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhc
Confidence 35678999999998874 33 455554 4567777888899999999999999876 3 443322222 222456789
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHH
Q 022531 130 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 209 (295)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 209 (295)
+++|.++++..... .|.|..++.--+-+.-..|+--+|.+ -+..-.+..+. |...|.-+...|...|++++|.-.+
T Consensus 102 ~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk-~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 102 YKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIK-ELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 99999999999985 36777888777777777788888888 67766666654 8899999999999999999999999
Q ss_pred HHHHhccCCCCHHhHHHHHHHHHhcC---ChHHHHHHHHHHhhhc
Q 022531 210 KSLRMTKQKMTSRNYICILSSYLMLG---HLKEVGEIIDQWKQSA 251 (295)
Q Consensus 210 ~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~~~ 251 (295)
+++.-.. +.++..+..+...+--.| +.+.|.++|.+..+..
T Consensus 178 EE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 178 EELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9998763 334444556666554333 6778889999988754
No 125
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00043 Score=58.14 Aligned_cols=53 Identities=9% Similarity=-0.039 Sum_probs=39.2
Q ss_pred HHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHH
Q 022531 16 TRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFE 68 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~ 68 (295)
+=++.+.+.|++++|...-..+....| +...+..-+-+..+.+++++|+.+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ik 70 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIK 70 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHH
Confidence 345566777888888888888887766 56677777777788888888875544
No 126
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.50 E-value=1.2e-05 Score=68.90 Aligned_cols=134 Identities=10% Similarity=0.102 Sum_probs=81.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhh
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 168 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (295)
-....+|.+|+.+++.+..... -..-|..+.+.|+..|+++.|.++|-+.- .++-.|.+|.+.|+|++
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHH
Confidence 3455677777777777766532 23346677778888888888888875532 23456788888888888
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 169 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
|.+ +-.+ -.++......|-+-..-.-.+|++.+|+++|-... .|+ ..|+.|-+.|..+..+++..+
T Consensus 810 a~k-la~e--~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 810 AFK-LAEE--CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHH-HHHH--hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 888 3322 23434344455554455556677777766654322 233 245556666666666555544
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.00046 Score=57.47 Aligned_cols=117 Identities=10% Similarity=-0.011 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 173 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
.++++.......-..+|..++..-.+..-...|..+|.+.++.+..+ ....+++++.-|| .++..-|.++|+--.++.
T Consensus 353 ~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf 431 (656)
T KOG1914|consen 353 IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF 431 (656)
T ss_pred HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc
Confidence 34444333322234567777877778888889999999998887776 5566677777776 467788889888776654
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC
Q 022531 252 TSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 252 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 292 (295)
. .+...-...++-+...++-..|..+|++.+..++.||.
T Consensus 432 ~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 432 G--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred C--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 2 22333355666677788888888888888887666553
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00024 Score=53.36 Aligned_cols=186 Identities=11% Similarity=0.008 Sum_probs=137.9
Q ss_pred ccChhHHHHHHhhcccC------CCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 022531 24 VFGIHSGERYFEGLPLS------AKTSE-TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 96 (295)
Q Consensus 24 ~~~~~~A~~~~~~~~~~------~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 96 (295)
..+.++..+++.++... +++.. .|..+.-+....|+.+.|..+++++... ++-+..+-..=.--+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 45688888888887654 34444 4566667778889999999999999877 3333333332233345678999
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 022531 97 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 176 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (295)
+|+++|+.+.+.+ +-|..++.--+...-..|+.-+|++-+....+ .+..|...|.-+...|...|+++.|.- .+++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~f-ClEE 179 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAF-CLEE 179 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHH-HHHH
Confidence 9999999999986 34677777777777778888899998888887 578899999999999999999999999 7888
Q ss_pred HHHhcCCCccccHHHHHHHHHhcC---CHHHHHHHHHHHHhc
Q 022531 177 AEKSITQRQWITYDFLIILYAGLG---NKDKIDQIWKSLRMT 215 (295)
Q Consensus 177 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 215 (295)
+.-..|. +...+..+...+...| +.+-+.++|.+..+.
T Consensus 180 ~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7665432 4445555655554444 566778888877664
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.47 E-value=0.00029 Score=61.88 Aligned_cols=134 Identities=9% Similarity=0.032 Sum_probs=71.5
Q ss_pred hccChhHHHHHHhhcccCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 022531 23 KVFGIHSGERYFEGLPLSAKTSETYTAL-LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 101 (295)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 101 (295)
..+++.+|..-...+....|+....-.+ .-.+.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 4456666666666666555543322221 12344566666666666655554422 555666666666666666666666
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 022531 102 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 161 (295)
Q Consensus 102 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (295)
|++..+. .|+......+..+|.+.+.+.+-.++--++-+ ..+.+...+-++++.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHH
Confidence 6666553 35555555566666666665544444333333 23334444444444443
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=3.1e-05 Score=63.45 Aligned_cols=125 Identities=11% Similarity=0.099 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (295)
....|+..+...++++.|+.+|+++.+.. |+ ....+++.+...++..+|.+++.+..+. .+.+......-...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34556666777889999999999998863 44 3445777777888888999999988864 355677777777888
Q ss_pred HhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022531 161 ITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR 213 (295)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 213 (295)
.+.++++.|.. +..++....+. +..+|..|..+|...|+++.|+..++.+-
T Consensus 245 l~k~~~~lAL~-iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALE-IAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHH-HHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 89999999999 77777665543 56789999999999999999998888763
No 131
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.45 E-value=0.00038 Score=54.74 Aligned_cols=269 Identities=10% Similarity=-0.051 Sum_probs=163.5
Q ss_pred CCCHHHHHHHH---HHHHhccChhHHHHHHhhcccCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH----
Q 022531 8 VLSDSDYATRI---DLMTKVFGIHSGERYFEGLPLSAKTSE-TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA---- 79 (295)
Q Consensus 8 ~~~~~~~~~li---~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---- 79 (295)
..|+..|-++. ..|...|+-..|+.=|....+..||-. .--.-...+.+.|.+++|..=|+..++.. |+.
T Consensus 66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~ 143 (504)
T KOG0624|consen 66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVL 143 (504)
T ss_pred cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhH
Confidence 34444444433 344555666666665555555555432 22223445667777888887777777664 211
Q ss_pred HH----------H--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022531 80 LM----------Y--NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGS 147 (295)
Q Consensus 80 ~~----------~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 147 (295)
.. | ...+..+...|+...|+.....+++-. +.|...|..-..+|...|++..|+.=++...+. ..
T Consensus 144 eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~ 220 (504)
T KOG0624|consen 144 EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--SQ 220 (504)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cc
Confidence 11 1 223334556677777777777777742 246666777777777778887777766666553 23
Q ss_pred CCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCcccc----HHHH---------HHHHHhcCCHHHHHHHHHHHHh
Q 022531 148 DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT----YDFL---------IILYAGLGNKDKIDQIWKSLRM 214 (295)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---------i~~~~~~g~~~~a~~~~~~m~~ 214 (295)
.++.+...+...+-..|+.+.++. ...+..+-. ||... |-.| +......++|.++.+-.+...+
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~-~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLK-EIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK 297 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHH-HHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 455566666677777777777777 555554433 33211 1111 1123456677777777776665
Q ss_pred ccCCCCHHhH---HHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 215 TKQKMTSRNY---ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 215 ~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
.........| ..+-+++...+++.+|++.-.+..... +.|+.++.-=..+|.-...++.|..=|+...+.
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5322222233 345667778888889988888887732 345778877788888888888888888887763
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.45 E-value=0.00047 Score=60.63 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=35.5
Q ss_pred hccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 022531 23 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK 97 (295)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 97 (295)
+.|+.++|..+++.....++ |..|...+-.+|-..++.++|..+|++..... |+......+..+|++.+++.+
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444332 44455555555555555555555555555442 344444444445555544443
No 133
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.44 E-value=7.6e-06 Score=60.01 Aligned_cols=101 Identities=16% Similarity=0.243 Sum_probs=72.5
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHHHc-----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------
Q 022531 29 SGERYFEGLPLSAKTSETYTALLHLYAG-----AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV----------- 92 (295)
Q Consensus 29 ~A~~~~~~~~~~~p~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------- 92 (295)
.-...|+.......|..+|..++..+.+ .|.++-....+..|.+.|+.-|..+|+.|+..+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 3445666665555788888888888865 477888889999999999999999999999976542
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC
Q 022531 93 -----GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 129 (295)
Q Consensus 93 -----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 129 (295)
.+.+-|++++++|...|+-||..|+..+++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1233466666666666666666666666666655544
No 134
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00019 Score=63.99 Aligned_cols=175 Identities=11% Similarity=0.049 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 022531 80 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 159 (295)
Q Consensus 80 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (295)
.+|..+..+-.+.|...+|++-|-+. -|+..|..+++.+.+.|.|++-.+++.-.++. ...|... +.++-+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHH
Confidence 34555555555555555554444221 13344555555555555555555554444443 3333332 245555
Q ss_pred HHhcCchhhHHHHHHHHHHHhcCCCc--------------------------cccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022531 160 YITASHLVNAESSTLVEAEKSITQRQ--------------------------WITYDFLIILYAGLGNKDKIDQIWKSLR 213 (295)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 213 (295)
|++.+++.+.++ +. ..|| +.-|..|...+...|++..|...-++
T Consensus 1176 yAkt~rl~elE~-fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRK-- 1245 (1666)
T KOG0985|consen 1176 YAKTNRLTELEE-FI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARK-- 1245 (1666)
T ss_pred HHHhchHHHHHH-Hh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 555555544444 11 1122 33344444555555555555444332
Q ss_pred hccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 022531 214 MTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 283 (295)
Q Consensus 214 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 283 (295)
..+..||-.+--+|...+.+..| +|.--... ....-..-++.-|-..|-+++...+++..
T Consensus 1246 ----Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~ii-vhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1246 ----ANSTKTWKEVCFACVDKEEFRLA-----QICGLNII-VHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred ----ccchhHHHHHHHHHhchhhhhHH-----HhcCceEE-EehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 12344555555555554444332 12111111 23333556777777777777777766543
No 135
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.41 E-value=7.7e-05 Score=64.29 Aligned_cols=168 Identities=16% Similarity=0.148 Sum_probs=107.1
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCH
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 130 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 130 (295)
+.+-....+|.+|+.+++.+..... -..-|..+...|+..|+++.|.++|-+. ..++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 4455667778888888887776642 2344667777888888888888888553 2255567788888888
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHH
Q 022531 131 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 210 (295)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 210 (295)
+.|.++-.+.. |.......|-+-..-+-+.|++.+|++ ++- ....|+ .-|..|-+.|..+..+++.+
T Consensus 808 ~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeq-lyi----ti~~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 808 EDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQ-LYI----TIGEPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhh-eeE----EccCch-----HHHHHHHhhCcchHHHHHHH
Confidence 88888766554 334555666666666777888888877 332 223344 34667777777777777766
Q ss_pred HHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 022531 211 SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIID 245 (295)
Q Consensus 211 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 245 (295)
+-... .-..|-..+..-|...|++..|...|-
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 43221 112334445555666666666655543
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=7.2e-05 Score=52.92 Aligned_cols=125 Identities=12% Similarity=0.065 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTS----ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEM 85 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l 85 (295)
..|..++..+. .++.+.+...++.+....|+. ...-.+...+...|++++|...|+........|+ ....-.|
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34555555553 666666666666666655522 2333344566667777777777777766541121 1233445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHH
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 139 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 139 (295)
...+...|++++|+..++..... ......+......+.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56666677777777776553322 22334455566667777777777776665
No 137
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.36 E-value=5.4e-07 Score=45.11 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=23.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 022531 259 ACNRLLGAFSDVGLTEKANEFHMLLLQKNC 288 (295)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 288 (295)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677888888888888888888888877764
No 138
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.36 E-value=1.4e-05 Score=65.77 Aligned_cols=120 Identities=12% Similarity=0.131 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQS--NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 120 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 120 (295)
+......++..+....+++++..++-+.... ....-..|.+++++.|.+.|..++++.+++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 6777888888888888999999999888765 22233456679999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 022531 121 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163 (295)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (295)
|+.+.+.|++..|.++...|... ....+..++...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 99999999999999999998776 5556667766666655555
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00055 Score=51.90 Aligned_cols=244 Identities=12% Similarity=0.001 Sum_probs=123.5
Q ss_pred hccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH-H
Q 022531 23 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL-V 101 (295)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~-~ 101 (295)
-.|++..++..-........+...-.-+-++|...|..... ..+++... .|....+..+.......++.++-+. +
T Consensus 20 Y~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 35667776665554443322333333344555555554322 22223222 3334444444444444444444333 3
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhc
Q 022531 102 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 181 (295)
Q Consensus 102 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (295)
.+.+.......+......-...|++.+++++|++..... .+......=...+.+..+.+-|.. .++.|.+-.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~-~lk~mq~id 167 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEK-ELKKMQQID 167 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHccc
Confidence 333333333333233333344467777777777765541 122222233444556666777776 555554422
Q ss_pred CCCccccHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCH
Q 022531 182 TQRQWITYDFLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI 257 (295)
Q Consensus 182 ~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 257 (295)
+..|.+.|..++.+ .+...+|.-+|++|-+. ..|+..+.+....++...|++++|..++++...+.. .+.
T Consensus 168 ---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~--~dp 241 (299)
T KOG3081|consen 168 ---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA--KDP 241 (299)
T ss_pred ---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC--CCH
Confidence 34555555555543 34567777777777553 366777777777777777777777777777766542 234
Q ss_pred HHHHHHHHHHHccCCh-HHHHHHHHHHH
Q 022531 258 SACNRLLGAFSDVGLT-EKANEFHMLLL 284 (295)
Q Consensus 258 ~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 284 (295)
.+...++-+-...|.. +...+.+.+++
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 4444444444444443 22334444443
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.34 E-value=2.1e-05 Score=53.43 Aligned_cols=97 Identities=12% Similarity=-0.019 Sum_probs=48.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChHhHHHHH
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSNL--SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV--PDIFTYNLWI 121 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li 121 (295)
++..++..+.+.|++++|...|+.+.+..- +.....+..+..++.+.|++++|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555555566666666655554320 011234444555555666666666666655543211 1123344455
Q ss_pred HHHHccCCHHHHHHHHHHHhh
Q 022531 122 SSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~ 142 (295)
.++.+.|++++|...++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 555555666666666665555
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.32 E-value=1.5e-05 Score=51.31 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=48.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc
Q 022531 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 126 (295)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 126 (295)
+..+...+...|++++|...|++..+.. +.+...+..+...+...+++++|.+.|+...+... .+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 3344445555555555555555555442 22334455555555555555666655555554322 122345555555555
Q ss_pred cCCHHHHHHHHHHHhh
Q 022531 127 TLNIDQVKKFLDEMSC 142 (295)
Q Consensus 127 ~~~~~~a~~~~~~~~~ 142 (295)
.|+++.|...+.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 5566666555555443
No 142
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.32 E-value=0.00084 Score=58.16 Aligned_cols=229 Identities=13% Similarity=0.041 Sum_probs=152.6
Q ss_pred HHHHHHhccChhHHHHHHhhcccCC--CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhC-CCC-----------------
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSA--KTSETYTALLHLYAGAKWTEKAEELFERVKQS-NLS----------------- 76 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~----------------- 76 (295)
+---|+..++++.|.+...+..... -+...|..|.-.+...+++.+|+.+.+..... |..
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~ 563 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDR 563 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccH
Confidence 3344567788888888888777763 37888888888888888888888888765543 210
Q ss_pred -CCHHHHHHHHHHHHh---------c--------------CCHHHHHHHHHHH--------HhCC---------CCC--C
Q 022531 77 -FNALMYNEMMTLYMS---------V--------------GQVEKVALVVEEI--------KRKN---------VVP--D 113 (295)
Q Consensus 77 -p~~~~~~~li~~~~~---------~--------------~~~~~a~~~~~~m--------~~~~---------~~p--~ 113 (295)
--..|...++..+-. . ++..++.+....+ ...| +.| +
T Consensus 564 e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~ 643 (799)
T KOG4162|consen 564 EEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPD 643 (799)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCC
Confidence 001111111111110 0 0111111111111 0001 111 1
Q ss_pred ------hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccc
Q 022531 114 ------IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI 187 (295)
Q Consensus 114 ------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (295)
...|......+.+.+..++|...+.+... ..+.....|......+...|.+++|.+ .|.....-.+. ++.
T Consensus 644 ~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~-af~~Al~ldP~-hv~ 719 (799)
T KOG4162|consen 644 SLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKE-AFLVALALDPD-HVP 719 (799)
T ss_pred chHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHH-HHHHHHhcCCC-CcH
Confidence 12344555667777888888877777776 456677788888888899999999999 67666554432 567
Q ss_pred cHHHHHHHHHhcCCHHHHHH--HHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 188 TYDFLIILYAGLGNKDKIDQ--IWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 188 ~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
...++...+.+.|+..-+.. ++..+...+ ..+...|-.+...+-+.|+.+.|-+.|+....-
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 78889999999998888887 999988876 557888999999999999999999999987653
No 143
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.31 E-value=1.9e-05 Score=51.50 Aligned_cols=81 Identities=10% Similarity=0.152 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChHhHHHHHHHHHccC--------CHHHHHHHHHHHhhcCCCCCCHH
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPDIFTYNLWISSCAATL--------NIDQVKKFLDEMSCDSGGSDDWV 151 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 151 (295)
|....|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|... +.+|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 445567777777999999999999999999 999999999999987653 244567888899887 7999999
Q ss_pred HHHHHHHHHHh
Q 022531 152 KYVNLVNIYIT 162 (295)
Q Consensus 152 ~~~~l~~~~~~ 162 (295)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99998887754
No 144
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=4.5e-05 Score=66.32 Aligned_cols=230 Identities=13% Similarity=0.157 Sum_probs=135.2
Q ss_pred HHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH
Q 022531 20 LMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSN---------LSFNALMYNEMMTLYM 90 (295)
Q Consensus 20 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~p~~~~~~~li~~~~ 90 (295)
.|...|+.|.|.+-.+.++ +..+|..|.+.|.+..+++-|.-.+..|.... -.|+ .+---..-.-.
T Consensus 737 fyvtiG~MD~AfksI~~Ik----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 4556677888777666553 56788888888888888888877776665321 1111 11112222335
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHH
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 170 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (295)
..|.+++|..+|++-++ |..|=..|-..|.|++|.++-+.--. .--..||.....-+...++.+.|+
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR----iHLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR----IHLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc----eehhhhHHHHHHHHHhhccHHHHH
Confidence 66778888888877655 33444556677888888776543211 112345656666666667777777
Q ss_pred HHHHHHHH----------HhcC---------CCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHH
Q 022531 171 SSTLVEAE----------KSIT---------QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY 231 (295)
Q Consensus 171 ~~~~~~~~----------~~~~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 231 (295)
+ +|++.. ...+ ..|...|.--..-.-..|+.+.|+.+|...++ |-++++..
T Consensus 879 e-yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 879 E-YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred H-HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 6 554321 1110 01222222222223345666666666654432 33456666
Q ss_pred HhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 232 LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
|-.|+.++|-++-++ .-|....-.|.+.|-..|++.+|..+|.+..
T Consensus 949 C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE-------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeccCchHHHHHHHh-------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667777777766554 2355566677888888888888888877654
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.30 E-value=5.8e-05 Score=51.25 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMM 86 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li 86 (295)
++-.+...+.+.|++++|.+.|+.+....|+ ...+..+..++.+.|+++.|...|+++.... .+....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555555556666666665555544332 2344445555555566666666665555432 111133455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 022531 87 TLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555556666666666555554
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.30 E-value=1e-06 Score=44.10 Aligned_cols=27 Identities=30% Similarity=0.632 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 82 YNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 82 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
||++|++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.29 E-value=0.00018 Score=50.49 Aligned_cols=104 Identities=10% Similarity=-0.059 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
+....-.+...+...|++++|..+|+-+...+ +-+..-|-.|.-++-..|++++|+..|......++ -|...+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 34455566667778899999999998888775 34566777888888888999999999988888754 36777777888
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCC
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSD 148 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 148 (295)
++...|+.+.|.+.|+......+-.|
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 88889999999988888776533333
No 148
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.29 E-value=3.7e-05 Score=60.73 Aligned_cols=130 Identities=14% Similarity=0.213 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHH-HHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHL-YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
.+|..+|.+.-+.+.++.|..+|.+.....+ +..+|-..... +...++.+.|..+|+...+. ++.+...|..-+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4688889999999999999999999886644 45555555444 22356677799999988876 566788888888999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh---HhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDI---FTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998876 33332 47888888888889999999998888874
No 149
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.0014 Score=58.74 Aligned_cols=237 Identities=9% Similarity=0.060 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCC-C---CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-K---TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM 85 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 85 (295)
|+...+..+.++...+-..+-+++++.+.-.. + +...-|.|+-.-.+..+ .++.+..+++-..+. |+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~-trVm~YI~rLdnyDa-~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR-TRVMEYINRLDNYDA-PD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh-HHHHHHHHHhccCCc-hh------H
Confidence 45555566666666666666666666654431 1 23333444443333332 445555555544431 21 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----------------------CCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRK----------------------NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~----------------------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.......+-+++|..+|++.-.. .+ -.+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 22233344455555555543110 00 02234444444444444444444433221
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHh
Q 022531 144 SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 223 (295)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 223 (295)
.|+..|..+++...+.|.|++-.+ ++.+..+....|.+ =+.||-+|++.++..+.++++. .||...
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~-yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~ 1196 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVK-YLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVAN 1196 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHH-HHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchh
Confidence 234445555666666666666555 55544444444332 2345555666665555555443 455555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 022531 224 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 282 (295)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (295)
...+..-|...|.++.|.-+|. ++.-|..|...+...|++..|.+.-++
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~----------~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYS----------NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHH----------HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555555555555555544443 233455666666666666666554433
No 150
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00029 Score=55.61 Aligned_cols=124 Identities=13% Similarity=0.082 Sum_probs=51.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHH-HHHHHH
Q 022531 119 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF-LIILYA 197 (295)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~ 197 (295)
++.+.+.-..++++++-++..+.. -+..|-..--.+.++++..|++.+|++ +|-.+..... .|..+|.+ |..+|.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~s--YF~NdD~Fn~N~AQAk~atgny~eaEe-lf~~is~~~i-kn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIES--YFTNDDDFNLNLAQAKLATGNYVEAEE-LFIRISGPEI-KNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhcCcchhhhHHHHHHHHhcChHHHHH-HHhhhcChhh-hhhHHHHHHHHHHHH
Confidence 333344444455555555555544 222222222344555555555555555 4433322211 23334332 334455
Q ss_pred hcCCHHHHHHHHHHHHhccCCCCHHh-HHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 198 GLGNKDKIDQIWKSLRMTKQKMTSRN-YICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 198 ~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
+.++++-|.+++-.+...+ +... ...+..-|-+.+.+--|-+.|+.+..
T Consensus 440 ~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred hcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 5555555555443332111 1111 11233344455555555555554443
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.23 E-value=3.6e-05 Score=63.03 Aligned_cols=103 Identities=10% Similarity=-0.055 Sum_probs=86.3
Q ss_pred HHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV 95 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 95 (295)
-...+...|++++|++.|++.....| +...|..+..++.+.|++++|+..+++..+.+ +.+...|..+..+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 34566788999999999999998877 78899999999999999999999999999875 45678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 96 EKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 96 ~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
++|+..|++..+. .|+.......+.
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l~ 111 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 9999999999885 455444444443
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.22 E-value=3.8e-05 Score=49.43 Aligned_cols=94 Identities=21% Similarity=0.137 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 022531 189 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS 268 (295)
Q Consensus 189 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (295)
+..+...+...|++++|..++++..+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHH
Confidence 4455666777788888888888776653 2233556667777778888888888888777643 334456777778888
Q ss_pred ccCChHHHHHHHHHHHh
Q 022531 269 DVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 269 ~~g~~~~a~~~~~~m~~ 285 (295)
..|+++.|...+.+..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 88888888888877765
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.22 E-value=0.00016 Score=61.90 Aligned_cols=135 Identities=14% Similarity=0.071 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHc--c---CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCC
Q 022531 43 TSETYTALLHLYAG--A---KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV--------GQVEKVALVVEEIKRKN 109 (295)
Q Consensus 43 ~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~ 109 (295)
+...|...+++... . ++...|..+|++..+.+ |-....|..+..++... .++..+.+..++.....
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 55666666555332 2 22556667777666654 22234444433333221 11233333333322221
Q ss_pred -CCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcC
Q 022531 110 -VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 182 (295)
Q Consensus 110 -~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (295)
...+...|..+.-.....|++++|...++++... .|+...|..+...+...|+.++|.+ .+.+.....+
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~-~~~~A~~L~P 484 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAAD-AYSTAFNLRP 484 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCC
Confidence 2223455555544455567777777777776654 2566667777777777777777777 6666554443
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.15 E-value=1e-05 Score=51.30 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHHHHHhccCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 022531 199 LGNKDKIDQIWKSLRMTKQK-MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 277 (295)
Q Consensus 199 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 277 (295)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46778888888887766431 2333444577888888888888888877 3322 123344445677888888888888
Q ss_pred HHHHH
Q 022531 278 EFHML 282 (295)
Q Consensus 278 ~~~~~ 282 (295)
.++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88765
No 155
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=0.00056 Score=59.89 Aligned_cols=210 Identities=15% Similarity=0.115 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccC-----------CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLS-----------AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN 78 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 78 (295)
+...|..+...|.+.+++|-|.-.+..|... .|+ .+=....-.-...|-+++|+.+|++-+..+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 5668999999999999999999988888653 122 222222333346788999999999887764
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHh----------hcC----
Q 022531 79 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS----------CDS---- 144 (295)
Q Consensus 79 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~----------~~~---- 144 (295)
.|=..|-..|.|++|+++-+.=-+-.+ -.||..-..-+-..++.+.|+++|++.. ...
T Consensus 831 -----LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 831 -----LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred -----HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 233456667899999987654332212 2456556666666778888888776532 110
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 022531 145 ----GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 220 (295)
Q Consensus 145 ----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 220 (295)
....+...|.-....+...|++|.|+. ++....+ |-+++...+-.|+.++|-++-++ . -|
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~-~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---s---gd 966 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALS-FYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---S---GD 966 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHH-HHHHhhh---------hhhheeeEeeccCchHHHHHHHh---c---cc
Confidence 012233445555566667888998888 7765543 44555556677888888777654 2 23
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 221 SRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
....-.|.+.|...|++.+|..+|.+..
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3444457777888888888877776543
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.14 E-value=0.00013 Score=57.72 Aligned_cols=135 Identities=10% Similarity=0.124 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL-YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 123 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 123 (295)
.+|..++...-+.+.++.|..+|.+..+.+ ..+..+|-..... |...++.+.|.++|+...+. ...+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 478888899989999999999999998654 2234455444444 33356777799999988875 55567778888888
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcC
Q 022531 124 CAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 182 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (295)
+.+.++.+.|..+|++....-.... ...+|...+..-.+.|+++.+.+ +..++.+..+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~-v~~R~~~~~~ 138 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK-VEKRAEELFP 138 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH-HHHHHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhh
Confidence 8999999999999999887421112 23588889998889999999888 7777766543
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.11 E-value=5.4e-06 Score=52.59 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=44.1
Q ss_pred cCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHH
Q 022531 57 AKWTEKAEELFERVKQSNLS-FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 135 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 135 (295)
.|+++.|+.+++++.+..-. |+...+..+..+|.+.|++++|..++++ .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666677777766655311 1334444566667777777777777666 22111 122333344566667777777776
Q ss_pred HHHH
Q 022531 136 FLDE 139 (295)
Q Consensus 136 ~~~~ 139 (295)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.08 E-value=8.8e-05 Score=52.02 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=82.1
Q ss_pred HHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 022531 16 TRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 94 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 94 (295)
.+...+...|++++|..+|+.+....| +..-|..|..++-..|++++|+..|......+ +-|+..+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 345556789999999999999988877 78889999999999999999999999999887 4678899999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 022531 95 VEKVALVVEEIKRK 108 (295)
Q Consensus 95 ~~~a~~~~~~m~~~ 108 (295)
.+.|.+.|+.....
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987664
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.04 E-value=0.00079 Score=49.15 Aligned_cols=87 Identities=14% Similarity=-0.036 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 120 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 120 (295)
....+..+...+...|++++|...|++....+..+. ...+..+...+.+.|++++|...+++..+... -+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 566788888888889999999999998876542221 46788888889999999999999988887532 245556666
Q ss_pred HHHHHccCCH
Q 022531 121 ISSCAATLNI 130 (295)
Q Consensus 121 i~~~~~~~~~ 130 (295)
...+...|+.
T Consensus 113 g~~~~~~g~~ 122 (172)
T PRK02603 113 AVIYHKRGEK 122 (172)
T ss_pred HHHHHHcCCh
Confidence 6677776664
No 160
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0017 Score=54.00 Aligned_cols=221 Identities=13% Similarity=0.005 Sum_probs=116.1
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHH-------
Q 022531 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL------- 119 (295)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~------- 119 (295)
...+..+.-+..++..|++-+....... -+..-++....+|...|.+.+....-+...+.|-. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4456666666677777777777766654 34444556666677777776666666655554422 1112222
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCcc-ccHHHHHHHHHh
Q 022531 120 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW-ITYDFLIILYAG 198 (295)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~ 198 (295)
+..++.+.++++.++..|.+.... ...|+.. .+....+++.. ..+... ...|.. .-.-.-...+.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte-~Rt~~~l---------s~lk~~Ek~~k-~~e~~a--~~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTE-HRTPDLL---------SKLKEAEKALK-EAERKA--YINPEKAEEEREKGNEAFK 370 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhh-hcCHHHH---------HHHHHHHHHHH-HHHHHH--hhChhHHHHHHHHHHHHHh
Confidence 233455566777777777776554 2232221 12223333333 221111 111111 000111334456
Q ss_pred cCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 022531 199 LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE 278 (295)
Q Consensus 199 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 278 (295)
.|++..|++.|.++.+.. +-|...|....-+|.+.|.+..|++--+...+.. ++....|..=..++....++++|++
T Consensus 371 ~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred ccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777776666654 3344556666666666666666666655555532 3344455444555555566666666
Q ss_pred HHHHHHhc
Q 022531 279 FHMLLLQK 286 (295)
Q Consensus 279 ~~~~m~~~ 286 (295)
.|.+.++.
T Consensus 448 ay~eale~ 455 (539)
T KOG0548|consen 448 AYQEALEL 455 (539)
T ss_pred HHHHHHhc
Confidence 66666553
No 161
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.02 E-value=0.004 Score=49.24 Aligned_cols=225 Identities=12% Similarity=0.039 Sum_probs=162.0
Q ss_pred HHHHhccChhHHHHHHhhcccCCCCH----HH------------HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHH
Q 022531 19 DLMTKVFGIHSGERYFEGLPLSAKTS----ET------------YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 82 (295)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~~p~~----~~------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 82 (295)
..+.+.|.++.|..=|+......|+. .. ....+..+...|+...|+.....+++-. +=|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 46788999999999999998876631 11 2223445566789999999999998864 4478888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHH----HHHH--
Q 022531 83 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK----YVNL-- 156 (295)
Q Consensus 83 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l-- 156 (295)
..-..+|...|++..|+.=++...+..-. +..++.-+-..+-..|+.+.++...++..+. .|+... |..+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---CcchhhHHHHHHHHHH
Confidence 89999999999999999888777665333 5666666777888999999999999888864 355432 2111
Q ss_pred -------HHHHHhcCchhhHHHHHHHHHHHhcCCCccccHH---HHHHHHHhcCCHHHHHHHHHHHHhccCCCC-HHhHH
Q 022531 157 -------VNIYITASHLVNAESSTLVEAEKSITQRQWITYD---FLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYI 225 (295)
Q Consensus 157 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~ 225 (295)
+......++|.++.+ ..+...+..+.-..+.++ .+..++...+++.+|++.-.+..+. .|+ ..++.
T Consensus 269 v~K~les~e~~ie~~~~t~cle-~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~ 345 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLE-AGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHH-HHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHH
Confidence 122345667777777 666666655543334443 4555667789999999999888764 555 67777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 226 CILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 226 ~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
--..+|.-...+|.|+.-|+...+.+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 77788888888888888888776643
No 162
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.02 E-value=0.006 Score=51.16 Aligned_cols=210 Identities=11% Similarity=0.118 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHccCCHHHHHH
Q 022531 60 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG---QVEKVALVVEEIKRKN-VVPDIFTYNLWISSCAATLNIDQVKK 135 (295)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~ 135 (295)
.+++..++++....-..-+..+|..+...--..- ..+.....++++...- ++|+ .+|...|+.-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 3455556655544322223334433333211111 2556666777666532 3443 567778888888888899999
Q ss_pred HHHHHhhcCCCCC-CHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 136 FLDEMSCDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 214 (295)
Q Consensus 136 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 214 (295)
+|.++.+. +..+ .+.++++++..||. ++.+-|.+ +|+.-.+.... +..--...+..+...++-..+..+|++...
T Consensus 388 iF~kaR~~-~r~~hhVfVa~A~mEy~cs-kD~~~Afr-IFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 388 IFKKARED-KRTRHHVFVAAALMEYYCS-KDKETAFR-IFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHhhc-cCCcchhhHHHHHHHHHhc-CChhHHHH-HHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 99999887 4444 67777888887764 56777888 66654443322 333335667777888888999999999888
Q ss_pred ccCCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHhhhcC--CCCCHHHHHHHHHHHHccCChH
Q 022531 215 TKQKMTS--RNYICILSSYLMLGHLKEVGEIIDQWKQSAT--SDFDISACNRLLGAFSDVGLTE 274 (295)
Q Consensus 215 ~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 274 (295)
.++.|+. ..|..++.-=..-|++..+.++-+++..... ..+....-..+++-|.-.+.+.
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 8655554 6688889888889999988888877655332 1222223334555565555443
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.01 E-value=0.00047 Score=50.14 Aligned_cols=63 Identities=10% Similarity=-0.057 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 80 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP--DIFTYNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 80 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+++...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555566555555554432111 123455555555555666666665555554
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.00 E-value=0.0005 Score=56.40 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=79.5
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCH
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 130 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 130 (295)
...+...|++++|+++|++.++.+ +-+...|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 455667899999999999999875 45788899999999999999999999999988643 2567788889999999999
Q ss_pred HHHHHHHHHHhhc
Q 022531 131 DQVKKFLDEMSCD 143 (295)
Q Consensus 131 ~~a~~~~~~~~~~ 143 (295)
++|...|++....
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 165
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0073 Score=51.13 Aligned_cols=96 Identities=15% Similarity=0.035 Sum_probs=55.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHH--------HHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcC-CCCCHH
Q 022531 188 TYDFLIILYAGLGNKDKIDQIWK--------SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT-SDFDIS 258 (295)
Q Consensus 188 ~~~~li~~~~~~g~~~~a~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 258 (295)
.--.++......|+++.|.+++. .+.+.+..|. +...+...+.+.++.+.|.+++++...--. ..+...
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 33345555677899999998888 5555444443 445566667777776666666665543100 011222
Q ss_pred H----HHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 259 A----CNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 259 ~----~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
. +.-...--.+.|+.++|..+++++.+
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 2 22223333456888888888888776
No 166
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.98 E-value=0.0027 Score=56.88 Aligned_cols=183 Identities=12% Similarity=-0.038 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHH
Q 022531 94 QVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS 172 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (295)
+...|+..|-+..+. .|+ ...|..|...|...-+...|.+.|+..-+- -..+......+.+.|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHH
Confidence 366666666555553 333 456888888888877888888888887763 244566677888888888888888883
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcC
Q 022531 173 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 252 (295)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 252 (295)
.+..........-...|....-.|...++...++.-|+...... +-|...|..+..+|.+.|++..|.++|.+...-
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 22222111111111223334445667788888888887665442 224455777888888888888888888876652
Q ss_pred CCCCHHHHHHHH--HHHHccCChHHHHHHHHHHHh
Q 022531 253 SDFDISACNRLL--GAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 253 ~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+|+. .|...- -.-+..|++++|...+..+..
T Consensus 626 -rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 -RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3432 232222 234567888888877776643
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.97 E-value=0.00052 Score=50.10 Aligned_cols=92 Identities=14% Similarity=0.022 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 86 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 86 (295)
...+..+...+...|++++|...|++.....|+ ...+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 345677888888999999999999988765432 4688999999999999999999999998864 33566777888
Q ss_pred HHHHhcCCHHHHHHHHH
Q 022531 87 TLYMSVGQVEKVALVVE 103 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~ 103 (295)
..+...|+...+..-++
T Consensus 114 ~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHcCChHhHhhCHH
Confidence 88888887655544333
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.97 E-value=1.8e-05 Score=47.84 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=23.0
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 57 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 107 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 107 (295)
.|++++|+++|+++.... +-+..++..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555444432 22444444455555555555555555544444
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.95 E-value=0.00032 Score=50.99 Aligned_cols=112 Identities=9% Similarity=-0.037 Sum_probs=77.8
Q ss_pred hhHHHHHHhhcc-cCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 022531 27 IHSGERYFEGLP-LSAK--TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF--NALMYNEMMTLYMSVGQVEKVALV 101 (295)
Q Consensus 27 ~~~A~~~~~~~~-~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~ 101 (295)
+..+...+..+. .... ....|..++..+...|++++|+..|++.......| ...+|..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444445555553 2222 46677888888888999999999999987653222 235888999999999999999999
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHH-------ccCCHHHHHHHHHH
Q 022531 102 VEEIKRKNVVPDIFTYNLWISSCA-------ATLNIDQVKKFLDE 139 (295)
Q Consensus 102 ~~~m~~~~~~p~~~~~~~li~~~~-------~~~~~~~a~~~~~~ 139 (295)
+++..... +....++..+...+. ..|+++.|...+++
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99988752 223455666666666 77887755555543
No 170
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0069 Score=50.59 Aligned_cols=197 Identities=11% Similarity=-0.009 Sum_probs=119.4
Q ss_pred HHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH-------
Q 022531 14 YATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM------- 86 (295)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li------- 86 (295)
...+.+..-+..++..|++-+....+...++.-++....++...|.+.++...-++..+.|-. ...-|+.+-
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 455777777888889999888887776645556666777899999998888888877776621 222333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhH-------------------------HHHHHHHHccCCHHHHHHHHHHHh
Q 022531 87 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTY-------------------------NLWISSCAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~~ 141 (295)
.+|.+.++++.++..|++....-..|+...= ..-...+.+.|++..|...|.+++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3555667888899888886655444433211 111334555667777777777766
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 142 CDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
.. .|.|...|..-.-+|.+.|.+..|.. -.+...+.. ++....|.-=..++....++++|.+.|.+-.+.
T Consensus 386 kr--~P~Da~lYsNRAac~~kL~~~~~aL~-Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 386 KR--DPEDARLYSNRAACYLKLGEYPEALK-DAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred hc--CCchhHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 64 25566667777777777777766666 333332221 112222322233333445666666666665554
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.92 E-value=0.0037 Score=49.68 Aligned_cols=188 Identities=12% Similarity=0.085 Sum_probs=98.0
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--hHh
Q 022531 48 TALLHLYAGAKWTEKAEELFERVKQ----SNLSF-NALMYNEMMTLYMSVGQVEKVALVVEEIKR----KNVVPD--IFT 116 (295)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~--~~~ 116 (295)
......|-..+++++|.+.|.+... .+-+. -...|.....+|.+. ++++|+..+++..+ .| .|+ ..+
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~ 116 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHH
Confidence 3344455555666666666654421 11100 112334444444333 66666666665543 22 122 234
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHhhc---CCC-CCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccc----
Q 022531 117 YNLWISSCAAT-LNIDQVKKFLDEMSCD---SGG-SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI---- 187 (295)
Q Consensus 117 ~~~li~~~~~~-~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---- 187 (295)
+..+...|... |++++|.+.|++.... .+. ..-..++..+...+.+.|++++|.+ .+++........+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~-~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE-IYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH-HHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHhhcccccchhH
Confidence 55666677777 8889998888876542 121 1113456677888889999999999 888776644332221
Q ss_pred --cHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CCCCH--HhHHHHHHHHHhcCChHH
Q 022531 188 --TYDFLIILYAGLGNKDKIDQIWKSLRMTK--QKMTS--RNYICILSSYLMLGHLKE 239 (295)
Q Consensus 188 --~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~--~~~~~li~~~~~~~~~~~ 239 (295)
.|-..+-++...|+...|.+.+++..... +..+. .....|+.+|- .||.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~ 252 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHH
Confidence 12223335566788888888888876542 22221 22344566654 344433
No 172
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.92 E-value=0.0028 Score=56.81 Aligned_cols=219 Identities=11% Similarity=0.017 Sum_probs=137.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHH
Q 022531 59 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLD 138 (295)
Q Consensus 59 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 138 (295)
+...|+..|-+..+.+. -=...|..|...|....+...|.+.|++..+..- -+......+.+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 35666666666665542 2255788888888888888889999988887532 256678888888999999999888733
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 022531 139 EMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK 218 (295)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 218 (295)
..-+......-...|....-.|.+.++..+|.. .++......++ |...|..+..+|.+.|++..|.++|.+.... +
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~-~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVC-EFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHH-HHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 322211100111112223345667778888877 66666555443 7888889999999999999999999876553 5
Q ss_pred CCHHhHHH--HHHHHHhcCChHHHHHHHHHHhhhcC-----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 219 MTSRNYIC--ILSSYLMLGHLKEVGEIIDQWKQSAT-----SDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 219 ~~~~~~~~--li~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
|+. +|.. ....-+..|.+.+|...+........ ..--..++-.+...+...|-..+|.++++.-+
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 554 3332 23344567888888888877654321 01122334444444445555555555555543
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.89 E-value=4.8e-05 Score=45.51 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=33.5
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 107 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 107 (295)
...+.+.|++++|.+.|+++.+.. +-+...+..+..++.+.|++++|...|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666666666654 33455666666666666666666666666654
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.88 E-value=0.0026 Score=54.69 Aligned_cols=139 Identities=12% Similarity=0.036 Sum_probs=92.0
Q ss_pred CCCCChHhHHHHHHHHHccC-----CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCc--------hhhHHHHHHH
Q 022531 109 NVVPDIFTYNLWISSCAATL-----NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH--------LVNAESSTLV 175 (295)
Q Consensus 109 ~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~ 175 (295)
+.+.+...|...+++..... +.+.|..+|++..+.. |.....+..+..++..... +..+.+ ...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~-~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALST-ELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH-HHH
Confidence 34567788888888854332 3678999999988752 3444555555444433221 222233 222
Q ss_pred HHHHh-cCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcC
Q 022531 176 EAEKS-ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 252 (295)
Q Consensus 176 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 252 (295)
..... ....+...|..+.......|++++|...+++.... .|+...|..+...+...|+.++|.+.+++...-..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 22121 12234456777766666789999999999998876 46778888899999999999999999998877543
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=0.0025 Score=50.60 Aligned_cols=199 Identities=13% Similarity=0.072 Sum_probs=113.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhh---cCCCC-CCHHHH
Q 022531 83 NEMMTLYMSVGQVEKVALVVEEIKRK----NVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSC---DSGGS-DDWVKY 153 (295)
Q Consensus 83 ~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~-~~~~~~ 153 (295)
......|-..|++++|...|.+..+. +-..+ ...|.....+|.+. ++++|...+++... ..|.+ .-..++
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33445566667777777777655321 11111 22344444444443 77788777776544 11211 123356
Q ss_pred HHHHHHHHhc-CchhhHHHHHHHHHHHhcCCCc-----cccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-----CHH
Q 022531 154 VNLVNIYITA-SHLVNAESSTLVEAEKSITQRQ-----WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-----TSR 222 (295)
Q Consensus 154 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~ 222 (295)
..+...|... |+++.|.+ .+.+..+.....+ ...+..+...+.+.|++++|.++|++........ +..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~-~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIE-YYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHCCTT--HHHHHH-HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 6777888888 89999999 8877765322211 2345567778899999999999999987653322 121
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHhhhc-CCC--CCHHHHHHHHHHHHcc--CChHHHHHHHHHH
Q 022531 223 -NYICILSSYLMLGHLKEVGEIIDQWKQSA-TSD--FDISACNRLLGAFSDV--GLTEKANEFHMLL 283 (295)
Q Consensus 223 -~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m 283 (295)
.|...+-++...||...|.+.|++..... .+. ........|+.+|-.. ..+..+..-|+.+
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 23344557777899999999999987643 121 1234556667666542 3444555444443
No 176
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.011 Score=47.61 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHH
Q 022531 152 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY 231 (295)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 231 (295)
+.+..+.-+...|+...|.+ +.+....|+..-|...+.+++..++|++..++... +-++.-|...+.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~k-----l~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEK-----LKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHH-----HHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 34455666777888877777 44555667888899999999999999988876542 12345688899999
Q ss_pred HhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 022531 232 LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 280 (295)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 280 (295)
.+.|...+|..++..+ ++ ..-+..|.+.|++.+|.+.-
T Consensus 248 ~~~~~~~eA~~yI~k~-------~~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-------PD----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHCCCHHHHHHHHHhC-------Ch----HHHHHHHHHCCCHHHHHHHH
Confidence 9999999998888761 12 23466677788887776553
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=0.00012 Score=43.72 Aligned_cols=56 Identities=14% Similarity=0.025 Sum_probs=34.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 228 LSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
...+.+.|++++|.+.|+++.+.. +-+...+..+..++...|++++|..+|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666666666666666643 23555666666666666666666666666654
No 178
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.82 E-value=0.00042 Score=51.10 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHcc----------------CCHHHHHH
Q 022531 77 FNALMYNEMMTLYMS-----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT----------------LNIDQVKK 135 (295)
Q Consensus 77 p~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------~~~~~a~~ 135 (295)
.|-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 467788888887764 467777888899999999999999999999987652 12355677
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 022531 136 FLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
++++|... |+.||..++..+++.+++.+..
T Consensus 125 lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLEQMENN-GVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHc-CCCCcHHHHHHHHHHhccccHH
Confidence 77777776 7777777777777777666553
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.81 E-value=0.00029 Score=56.73 Aligned_cols=266 Identities=15% Similarity=0.037 Sum_probs=164.2
Q ss_pred HHHHHhccChhHHHHHHhhcccCCC-C----HHHHHHHHHHHHccCcHHHHHHHHHH------HH--hCCCCCCHHHHHH
Q 022531 18 IDLMTKVFGIHSGERYFEGLPLSAK-T----SETYTALLHLYAGAKWTEKAEELFER------VK--QSNLSFNALMYNE 84 (295)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~~p-~----~~~~~~li~~~~~~~~~~~a~~~~~~------m~--~~~~~p~~~~~~~ 84 (295)
-+-+|+.|+......+|+...+.+. | ..+|+.|..+|.-.+++++|++.... .. +.| ...+-..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG---EAKssgN 100 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG---EAKSSGN 100 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc---ccccccc
Confidence 3567999999999999999887653 3 45688888899999999999887532 11 111 1223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----HhCCCC-CChHhHHHHHHHHHccCC--------------------HHHHHHHHHH
Q 022531 85 MMTLYMSVGQVEKVALVVEEI----KRKNVV-PDIFTYNLWISSCAATLN--------------------IDQVKKFLDE 139 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m----~~~~~~-p~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~ 139 (295)
|.+.+-..|.+++|+-.-.+- .+.|-. .....+..+...|...|+ ++.|.++|.+
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 555556667777765443321 222211 123444456666654433 3445555543
Q ss_pred Hh----hcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHH----HhcCCC-ccccHHHHHHHHHhcCCHHHHHHHHH
Q 022531 140 MS----CDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE----KSITQR-QWITYDFLIILYAGLGNKDKIDQIWK 210 (295)
Q Consensus 140 ~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 210 (295)
-. +.+.--.-...|..+.+.|--.|+++.|.. .-+.-. +-|... ....+..+..++.-.|+++.|.+.|+
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~-~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIH-FHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHH-HHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 21 111111122356666666777889999887 333221 122211 23567778888899999999999998
Q ss_pred HHHhccCC-----CCHHhHHHHHHHHHhcCChHHHHHHHHHHhh----hcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 022531 211 SLRMTKQK-----MTSRNYICILSSYLMLGHLKEVGEIIDQWKQ----SATSDFDISACNRLLGAFSDVGLTEKANEFHM 281 (295)
Q Consensus 211 ~m~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 281 (295)
.....-++ ......-+|...|.-..+++.|+.++.+-.. -+-..-....|.+|..+|...|..++|+.+..
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 75432221 2223344678888888889999988875432 11112356789999999999999999998887
Q ss_pred HHHhcC
Q 022531 282 LLLQKN 287 (295)
Q Consensus 282 ~m~~~g 287 (295)
.-++..
T Consensus 340 ~hl~~s 345 (639)
T KOG1130|consen 340 LHLRSS 345 (639)
T ss_pred HHHHHH
Confidence 765543
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.80 E-value=0.0036 Score=42.33 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=43.9
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---h-HhHHHHHHHH
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD---I-FTYNLWISSC 124 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~-~~~~~li~~~ 124 (295)
..++-..|+.++|+.+|++....|+... ...+-.+.+.+...|++++|+.+|++..... |+ . .....+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3444455666666666666666554332 2234445555556666666666666555431 22 1 1111122234
Q ss_pred HccCCHHHHHHHHHHHh
Q 022531 125 AATLNIDQVKKFLDEMS 141 (295)
Q Consensus 125 ~~~~~~~~a~~~~~~~~ 141 (295)
...|+.++|+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 45566666665554433
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.79 E-value=0.00012 Score=44.21 Aligned_cols=51 Identities=22% Similarity=0.166 Sum_probs=28.2
Q ss_pred hccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhC
Q 022531 23 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQS 73 (295)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (295)
+.|++++|.++|+.+....| +...+..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555555555555555544 4555555555555555555555555555554
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00039 Score=53.65 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=75.8
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCC
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLN 129 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~ 129 (295)
..-..+.+++.+|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++=.+..+.. .|+ ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 444566788888888888888775 456667777788888888888888877777663 343 5678888888888888
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 022531 130 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160 (295)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (295)
+++|.+.|++..+ +.|+..+|-.=+...
T Consensus 165 ~~~A~~aykKaLe---ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 165 YEEAIEAYKKALE---LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHHhhhc---cCCCcHHHHHHHHHH
Confidence 8888888888775 346666665555444
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00024 Score=54.78 Aligned_cols=95 Identities=19% Similarity=0.115 Sum_probs=63.8
Q ss_pred HHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-HHhHHHHHHHHHhcCCh
Q 022531 159 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHL 237 (295)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~ 237 (295)
-..+.+++++|+. .|.+...-.+. |.+-|..-..+|.+.|.++.|++=.+..... .|. ..+|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~-kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVD-KYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHH-HHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 3556777777777 77776665543 6667777777788888877777766655543 332 35677777778888888
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHH
Q 022531 238 KEVGEIIDQWKQSATSDFDISAC 260 (295)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~ 260 (295)
++|.+.|+...+ + .|+-.+|
T Consensus 166 ~~A~~aykKaLe--l-dP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALE--L-DPDNESY 185 (304)
T ss_pred HHHHHHHHhhhc--c-CCCcHHH
Confidence 888877777766 2 3544444
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.76 E-value=0.00021 Score=43.21 Aligned_cols=63 Identities=25% Similarity=0.296 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKR 107 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 107 (295)
..+|..+...+...|++++|+..|++..+.+ +-+...|..+..+|...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555543 234445555555555555 45555555555443
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.75 E-value=0.0031 Score=42.62 Aligned_cols=87 Identities=11% Similarity=-0.065 Sum_probs=55.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHH
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPD--IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGG-SDDWVKYVNLVNIYI 161 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 161 (295)
+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+|++......- +.+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677888888888888877776544 234555666777788888888888877664110 012223333445666
Q ss_pred hcCchhhHHH
Q 022531 162 TASHLVNAES 171 (295)
Q Consensus 162 ~~~~~~~a~~ 171 (295)
..|+.++|.+
T Consensus 87 ~~gr~~eAl~ 96 (120)
T PF12688_consen 87 NLGRPKEALE 96 (120)
T ss_pred HCCCHHHHHH
Confidence 7788888777
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.72 E-value=0.012 Score=45.43 Aligned_cols=185 Identities=10% Similarity=0.056 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh---HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHH
Q 022531 78 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT---YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 154 (295)
Q Consensus 78 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (295)
+...+-.....+.+.|++++|.+.|+++...-..+ ..+ .-.+..++.+.+++++|...+++..+.....|+. -|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHH
Confidence 44445456666778899999999999998853322 222 2345677889999999999999988763333333 233
Q ss_pred HHHHHHHh--cC---------------c---hhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 155 NLVNIYIT--AS---------------H---LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 214 (295)
Q Consensus 155 ~l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 214 (295)
..+.+.+. .+ + ...|.. . +..++.-|-...-..+|...+..+.+
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~-~---------------~~~li~~yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR-D---------------FSKLVRGYPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH-H---------------HHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 33333321 11 0 112222 2 33344434334444555554444432
Q ss_pred ccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 215 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD-FDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 215 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
. .-...+ .+.+-|.+.|.+..|..-++.+.++.... ........++.+|...|..++|..+...+.
T Consensus 173 ~---la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 173 R---LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred H---HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1 111112 47777999999999999999998865322 233456678899999999999998877654
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.70 E-value=0.00098 Score=51.95 Aligned_cols=96 Identities=9% Similarity=-0.001 Sum_probs=54.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChHhHHH
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV--VPDIFTYNL 119 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ 119 (295)
.|...+....+.|++++|...|+.+.+.- |+ ..++-.+...|...|++++|...|+.+.+.-. ......+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444445566666766666666542 22 23555666666667777777777766664311 011233444
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhc
Q 022531 120 WISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
+...+...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455556667777777777766654
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.69 E-value=0.00035 Score=42.26 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=48.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHh
Q 022531 220 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG-LTEKANEFHMLLLQ 285 (295)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 285 (295)
+...|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|.+.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34567777778888888888888888887754 346777888888888888 68888888887765
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.67 E-value=0.015 Score=44.97 Aligned_cols=184 Identities=9% Similarity=0.025 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY---NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 119 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 119 (295)
+...+-.....+...|++++|.+.|+++.... +-+.... -.+..+|.+.+++++|...+++..+....-...-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44445556666678999999999999998864 2233333 4567788999999999999999988643222233444
Q ss_pred HHHHHHc--cC---------------C---HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 022531 120 WISSCAA--TL---------------N---IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 179 (295)
Q Consensus 120 li~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (295)
.+.+.+. .+ + ..+|+..|+++.+. . |+.. -..+|.. .+..+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--y-P~S~-------------ya~~A~~-rl~~l~~ 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--Y-PNSQ-------------YTTDATK-RLVFLKD 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--C-cCCh-------------hHHHHHH-HHHHHHH
Confidence 4444321 11 1 23455666666654 2 3321 2333333 2222222
Q ss_pred hcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 180 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK--QKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 180 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
..-. ---.+...|.+.|.+..|..-++.+.+.- -+........++.+|...|..++|.++...+.
T Consensus 173 ~la~----~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 173 RLAK----YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHH----HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111 01134566888999999999999887752 12223445678899999999999988877654
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.67 E-value=0.0042 Score=53.22 Aligned_cols=261 Identities=10% Similarity=0.042 Sum_probs=145.6
Q ss_pred CCCCHHHHHHHHHHHHhccChhHHHHHH---------hhcccCCCCHHHHHHHHHHHHccCcH--HHHHHHHHHHHhCCC
Q 022531 7 FVLSDSDYATRIDLMTKVFGIHSGERYF---------EGLPLSAKTSETYTALLHLYAGAKWT--EKAEELFERVKQSNL 75 (295)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~---------~~~~~~~p~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~ 75 (295)
+.+.+..+.+-+..|...|.+++|.++- +.+.....+.--++..=.+|.+..+. -+...-+++++++|-
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 4555666777777888888888887642 11111112333445555566666553 344445667888887
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc--CCCCCC
Q 022531 76 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV----VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD--SGGSDD 149 (295)
Q Consensus 76 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 149 (295)
.|+... +...++-.|.+.+|.++|.+--..+- -.|...|. ...-+...|..++-..+.++--.. .-..|
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD-~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP- 706 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFD-YAQEFLGSGDPKEKKMLIRKRADWARNIKEP- 706 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHH-HHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-
Confidence 777643 34456667888888888765322110 00111111 233344455544444433322111 01122
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHH-----HHHHHHhc---CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH
Q 022531 150 WVKYVNLVNIYITASHLVNAESST-----LVEAEKSI---TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 221 (295)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~-----~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 221 (295)
.+..+++...|+.++|..++ .+.+.+-+ ...+..+...+..-+-+...+.-|-++|..|-+.
T Consensus 707 ----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 707 ----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred ----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 23456677788888887731 22222222 2223334444444445566677788888776432
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHH-----------HHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 022531 222 RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA-----------CNRLLGAFSDVGLTEKANEFHMLLLQKNC 288 (295)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 288 (295)
..+++.....+++++|..+-+...+ ..||+.. |..--.+|.++|+-.+|.++++++....+
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCcc---ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 2477778888999999888776544 1244431 33344678889999999999988765433
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.004 Score=48.40 Aligned_cols=102 Identities=9% Similarity=-0.027 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHcc---CCHHHHHHHHHHHhhcCCCCCCHHHH
Q 022531 77 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT---LNIDQVKKFLDEMSCDSGGSDDWVKY 153 (295)
Q Consensus 77 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (295)
-|...|-.|...|.+.|+.+.|..-|.+..+.. .++...+..+..++... .+-.++..+|+++... -+.++.+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 355555556666666666666655555555431 12333333333332211 1234555555555553 23444444
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhcC
Q 022531 154 VNLVNIYITASHLVNAESSTLVEAEKSIT 182 (295)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (295)
.-+...+...|++.+|.. .++.|.+..+
T Consensus 231 ~lLA~~afe~g~~~~A~~-~Wq~lL~~lp 258 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAA-AWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHcccHHHHHH-HHHHHHhcCC
Confidence 555555555566666655 5555555443
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.61 E-value=0.013 Score=42.38 Aligned_cols=130 Identities=9% Similarity=-0.037 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 022531 76 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 155 (295)
Q Consensus 76 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 155 (295)
.|++..--.|..+..+.|+..+|...|++...--..-|....-.+.++....+++..|...++.+.+...-.-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 46666666777777777777777777777665444455666666777777777777777777776553211112233345
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHH
Q 022531 156 LVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQI 208 (295)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 208 (295)
+...+...|+..+|+. .|+.....-+.|-...|.. ..+.+.|+.+++..-
T Consensus 166 ~aR~laa~g~~a~Aes-afe~a~~~ypg~~ar~~Y~--e~La~qgr~~ea~aq 215 (251)
T COG4700 166 FARTLAAQGKYADAES-AFEVAISYYPGPQARIYYA--EMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHhcCCchhHHH-HHHHHHHhCCCHHHHHHHH--HHHHHhcchhHHHHH
Confidence 6677777777777777 6776666555544433322 223555655554443
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.019 Score=43.83 Aligned_cols=132 Identities=8% Similarity=-0.015 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHH-----H
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV-----N 155 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~ 155 (295)
+.+.++..+.-.|++.-...++.+..+...+-++.....|++.-.+.||.+.|..+|++..+. .-..+..+.+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445666666667777777777777777655556677777777777778888888887766654 2223333332 2
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 156 LVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
....|.-.+++..|.. .+.+.....+ .+...-|.-.-+..-.|+..+|++.++.|...
T Consensus 258 ~a~i~lg~nn~a~a~r-~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHR-FFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHH-HHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2334444556666666 5554443332 24444444333344567777888888877765
No 194
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.57 E-value=0.0016 Score=44.55 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=47.6
Q ss_pred hccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHcc
Q 022531 214 MTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 270 (295)
Q Consensus 214 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (295)
.....|+..+..+++.+|+..|++..|.++++...+....+-+..+|..|+.-+...
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 345688999999999999999999999999999988766666788999998755443
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.022 Score=43.55 Aligned_cols=142 Identities=11% Similarity=0.038 Sum_probs=105.6
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHH
Q 022531 115 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLII 194 (295)
Q Consensus 115 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 194 (295)
...++++......|.+.-....+.+..+. ..+.++.....+.++-.+.|+.+.|.. .+++..+...+.|..+.+.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~-yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEK-YFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHhhhhccchhHHHH
Confidence 45666777778888888889999998886 556778888899999999999999999 9999988877778777776654
Q ss_pred -----HHHhcCCHHHHHHHHHHHHhccCCCCHHhHH--HHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 022531 195 -----LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI--CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLL 264 (295)
Q Consensus 195 -----~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 264 (295)
.|.-.+++..|.+.+.+..... .-|+...| +|+..| .|+..+|.+.++.|++.- |...+-++++
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~~---P~~~l~es~~ 326 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQD---PRHYLHESVL 326 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHH--HHHHHHHHHHHHHHhccC---CccchhhhHH
Confidence 3455778888888888776553 22333333 344444 588999999999998743 5555444333
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.50 E-value=0.00084 Score=47.55 Aligned_cols=125 Identities=10% Similarity=0.085 Sum_probs=57.3
Q ss_pred CHHHHHHHHHH---HHhccChhHHHHHHhhcccC--CC---CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHH
Q 022531 10 SDSDYATRIDL---MTKVFGIHSGERYFEGLPLS--AK---TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM 81 (295)
Q Consensus 10 ~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~~--~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 81 (295)
|...|..++.. ....++.+.+...++.+... ++ +... ..-+.....-++.+. ..+
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~ 64 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDA 64 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHH
Confidence 34455555433 35567888888877777654 21 2111 111111111221111 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhh----cCCCCCCHHH
Q 022531 82 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC----DSGGSDDWVK 152 (295)
Q Consensus 82 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 152 (295)
...++..+...|++++|..+.+.+..... .|...|..+|.++...|+...|.++|+++.. .-|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44455555556666666666666655422 2455566666666666666666666555422 1255555543
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.46 E-value=0.0039 Score=42.61 Aligned_cols=51 Identities=14% Similarity=-0.069 Sum_probs=31.7
Q ss_pred CCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 022531 110 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160 (295)
Q Consensus 110 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (295)
..|+..+..+++.+|+..+++..|+++.+...+..+++.+..+|..|++-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456666666666666666666666666666666555555556666655543
No 198
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.067 Score=46.92 Aligned_cols=247 Identities=13% Similarity=0.104 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCC---C---CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC-----------
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSA---K---TSETYTALLHLYAGAKWTEKAEELFERVKQSN----------- 74 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----------- 74 (295)
.+|..+....-.+|+++-|..+++.=+..+ | +..-+..-+.-+.+.|+.+....++-.++..-
T Consensus 508 iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~ 587 (829)
T KOG2280|consen 508 ISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRN 587 (829)
T ss_pred eeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888999999999987655542 2 45556677777888888888877777665431
Q ss_pred CCCCHHHHHHHHH--------HHHhcCCHHHHHHHH--HHHH----hCCCCCChHhHHHHHHHHHccCC----------H
Q 022531 75 LSFNALMYNEMMT--------LYMSVGQVEKVALVV--EEIK----RKNVVPDIFTYNLWISSCAATLN----------I 130 (295)
Q Consensus 75 ~~p~~~~~~~li~--------~~~~~~~~~~a~~~~--~~m~----~~~~~p~~~~~~~li~~~~~~~~----------~ 130 (295)
.+.....|.-+++ .+.+.++-.++..-| +... ..|..|+ .......|.+... .
T Consensus 588 ~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred chhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHH
Confidence 1112222222222 111222222222222 1110 0122233 3334444544433 1
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHH
Q 022531 131 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 210 (295)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 210 (295)
.+-+.+.+.+..+.+....-.+.+--+.-+...|+..+|.+ +.....-||-..|..-+.+++..++|++.+++-+
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~q-----l~~~FkipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQ-----LKSDFKIPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHH-----HHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 22233333444433433444455566677788899999888 5566667888899999999999999999888776
Q ss_pred HHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 022531 211 SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 282 (295)
Q Consensus 211 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (295)
..+ .+.-|...+.+|.+.|+.++|.+++-+.. +.. -.+.+|.+.|++.+|.++--+
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-------~l~---ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-------GLQ---EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-------ChH---HHHHHHHHhccHHHHHHHHHH
Confidence 543 13457779999999999999999887632 111 467788888888888766443
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.45 E-value=0.00061 Score=48.26 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCChHhHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK-----RKNVVPDIFTYN 118 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~p~~~~~~ 118 (295)
.....++..+...|++++|..+.+.+...+ |.+...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 466777788888999999999999998876 5678889999999999999999999998764 358888876643
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0057 Score=47.57 Aligned_cols=109 Identities=8% Similarity=-0.025 Sum_probs=87.7
Q ss_pred HHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 022531 33 YFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG---QVEKVALVVEEIKRK 108 (295)
Q Consensus 33 ~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~ 108 (295)
-++.-....| |...|-.|...|...|+++.|...|.+..+.. ++++..+..+..++.... .-.++..+|+++...
T Consensus 144 ~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 144 RLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 3333333356 89999999999999999999999999998874 567888888887766543 356899999999986
Q ss_pred CCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 109 NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 109 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.. -|+.+...|...+...|++.+|...|+.|.+.
T Consensus 223 D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 223 DP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred CC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 43 26777788888899999999999999999985
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.41 E-value=0.0078 Score=47.00 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=44.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC--ccccHHH
Q 022531 117 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR--QWITYDF 191 (295)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ 191 (295)
|...+....+.|++++|...|+...+.. |.+ ..++..+..+|...|++++|.. .|..+.+..+.. ....+-.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~-~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAY-YFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCCCcchhHHHHH
Confidence 3333333344455555555555555431 111 2344455555555555555555 555554433321 1122222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 192 LIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 192 li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
+...+...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444555556666555555543
No 202
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.38 E-value=0.019 Score=38.91 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=69.4
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHH
Q 022531 125 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 204 (295)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 204 (295)
.-.|..+++.++..+.... .+..-+|.+|.-....-+-+-..+ +++ .-|...|... .|+...
T Consensus 13 ildG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~-~Ld---sIGkiFDis~----------C~NlKr 74 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVE-TLD---SIGKIFDISK----------CGNLKR 74 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHH-HHH---HHGGGS-GGG-----------S-THH
T ss_pred HHhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHH-HHH---HHhhhcCchh----------hcchHH
Confidence 4457777777777776664 233334444433333333333333 222 3333333322 233333
Q ss_pred HHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 205 IDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 205 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
....+-.+ ..+...+...+..+...|+-|.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.++++++-
T Consensus 75 Vi~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 75 VIECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33333321 2233445566777777777777777777776533 4566667777778888888888888888777
Q ss_pred hcCCC
Q 022531 285 QKNCA 289 (295)
Q Consensus 285 ~~g~~ 289 (295)
++|++
T Consensus 148 ekG~k 152 (161)
T PF09205_consen 148 EKGLK 152 (161)
T ss_dssp HTT-H
T ss_pred HhchH
Confidence 77764
No 203
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.37 E-value=0.0063 Score=46.86 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=86.0
Q ss_pred HHHHHhhcccCCCCHHHHHHHHHHHHcc-----CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----------
Q 022531 30 GERYFEGLPLSAKTSETYTALLHLYAGA-----KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG----------- 93 (295)
Q Consensus 30 A~~~~~~~~~~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------- 93 (295)
....|........|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 3455655554456888888888877654 668888888999999999999999999999765432
Q ss_pred -----CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCH-HHHHHHHHHHhh
Q 022531 94 -----QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI-DQVKKFLDEMSC 142 (295)
Q Consensus 94 -----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~ 142 (295)
+-+=+++++++|...|+.||-.+-..|++++.+-+-. .+...+.-.|.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2234789999999999999999999999999887754 344444444544
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.36 E-value=0.0011 Score=40.63 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=31.6
Q ss_pred HHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 53 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
.|.+.+++++|.++++++...+ |.++..|.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455566666666666665553 334555555555666666666666666665553
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.30 E-value=0.07 Score=43.65 Aligned_cols=31 Identities=6% Similarity=0.085 Sum_probs=20.0
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 220 TSRNYICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
+-+.+..++.++.-.|+.++|.+..+.|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3444556666666777777777777776653
No 206
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.076 Score=46.40 Aligned_cols=217 Identities=10% Similarity=0.042 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHH----------HHHHHccCcHHHHHHHHHHHHhCCCCC
Q 022531 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTAL----------LHLYAGAKWTEKAEELFERVKQSNLSF 77 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l----------i~~~~~~~~~~~a~~~~~~m~~~~~~p 77 (295)
.|-+..|..|.+...+.-.++-|+..|-....- |.+...-.| ...-+--|++++|.+++-+|-.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh--
Confidence 456666666666666666666666666544332 111100000 0111123666666666666655542
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChHhHHHHHHHHHccCCHHHHHHHHHHHhhc------------
Q 022531 78 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV--PDIFTYNLWISSCAATLNIDQVKKFLDEMSCD------------ 143 (295)
Q Consensus 78 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------ 143 (295)
.|..+.+.|+|-.+.++++.-- .+.. --...|+.+...++....|++|.++|..-...
T Consensus 766 -------Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 766 -------AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLEL 837 (1189)
T ss_pred -------hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHh
Confidence 3444455555544444432210 0000 01133444444444444444444444321110
Q ss_pred --------CCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 144 --------SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 144 --------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
...+.+....-.+.+++.+.|.-++|.+ .+-+ ... | ..-+.+|...++|.+|.++-++..
T Consensus 838 f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~-a~Lr--~s~--p-----kaAv~tCv~LnQW~~avelaq~~~-- 905 (1189)
T KOG2041|consen 838 FGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE-AYLR--RSL--P-----KAAVHTCVELNQWGEAVELAQRFQ-- 905 (1189)
T ss_pred hhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH-HHHh--ccC--c-----HHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 0123444455566677777777777766 3321 111 1 134456677777777777766433
Q ss_pred cCCCCHHhHH--------------HHHHHHHhcCChHHHHHHHHHHhh
Q 022531 216 KQKMTSRNYI--------------CILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 216 ~~~~~~~~~~--------------~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
-|...+.. --|..+.+.|+.-+|-+++.+|.+
T Consensus 906 --l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 906 --LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred --chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 22222211 134445566766666777776644
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.26 E-value=0.0014 Score=40.73 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhh----cCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 223 NYICILSSYLMLGHLKEVGEIIDQWKQS----ATSDFD-ISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+|+.+...|...|++++|+..|++..+. +...|+ ..++..+..+|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666777777777766665432 101122 44566777777777777777777776543
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.25 E-value=0.0027 Score=38.76 Aligned_cols=55 Identities=9% Similarity=0.078 Sum_probs=29.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 195 LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
.|.+.+++++|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555666666665555542 223334444555555666666666666655554
No 209
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.037 Score=49.05 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=125.2
Q ss_pred CCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022531 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 86 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 86 (295)
.+.+.+...-++.+.+...++-|..+-+.-....- -......-...+-+.|++++|..-|-+-+.. +.|. .+|
T Consensus 331 ~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 331 ELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred eeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 34455566778888888888888888765443111 1234444555667789999999988766644 2332 356
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 022531 87 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .+....| ....+..+-+.+-.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYL 479 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChH
Confidence 6677777888888899999999886 66777889999999999998877766555 2122222 34677788888888
Q ss_pred hhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHH
Q 022531 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL 212 (295)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 212 (295)
++|.. +-... . .+......+ +-..+++++|++.+..|
T Consensus 480 ~~a~~-LA~k~----~-~he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAEL-LATKF----K-KHEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHH-HHHHh----c-cCHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 88877 32221 1 123333333 35678899999988865
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.14 E-value=0.065 Score=40.28 Aligned_cols=173 Identities=13% Similarity=0.046 Sum_probs=85.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 022531 84 EMMTLYMSVGQVEKVALVVEEIKRKNVV--PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 161 (295)
Q Consensus 84 ~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (295)
.....+.+.|++.+|.+.|+++...-.. --....-.++.++.+.|+++.|...+++........|.. -+...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHH
Confidence 3344455666666666666666653211 112234445566666667777776666655542212211 1111122111
Q ss_pred hc-------------CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHH
Q 022531 162 TA-------------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL 228 (295)
Q Consensus 162 ~~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 228 (295)
.. +...+|.. .+..++.-|-......+|...+..+.+. .... --.+.
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~----------------~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia 148 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIE----------------EFEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIA 148 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHH----------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHH
T ss_pred HHHhCccchhcccChHHHHHHHH----------------HHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHH
Confidence 11 11222333 3334444444455555565555544331 1111 12367
Q ss_pred HHHHhcCChHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHccCChHHHH
Q 022531 229 SSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAFSDVGLTEKAN 277 (295)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 277 (295)
+-|.+.|.+..|..-++.+.++....+ .......++.+|.+.|..+.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 788899999999999999888642111 1134567788888888877544
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.13 E-value=0.055 Score=39.24 Aligned_cols=136 Identities=10% Similarity=-0.002 Sum_probs=105.3
Q ss_pred CCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCC-Ccccc
Q 022531 110 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ-RQWIT 188 (295)
Q Consensus 110 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 188 (295)
+.|+...-..|..+..+.|+..+|...|++.... .+.-|......+.++....++...|.. .++.+.+..+. .+..+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~-tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQ-TLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHH-HHHHHhhcCCccCCCCc
Confidence 4578777788999999999999999999999874 567788888888899999999999999 88887765532 12334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 189 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 189 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
.-.+...+...|...+|+.-|+..... -|+...-......+.+.|+.++|..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 556778889999999999999988875 55555544566667788888777766555544
No 212
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.097 Score=45.78 Aligned_cols=228 Identities=10% Similarity=0.068 Sum_probs=118.7
Q ss_pred ChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhC-CCCCC--------HHHHHHHHHHHHhcCCHH
Q 022531 26 GIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQS-NLSFN--------ALMYNEMMTLYMSVGQVE 96 (295)
Q Consensus 26 ~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~--------~~~~~~li~~~~~~~~~~ 96 (295)
.+++|.++.+ ..|-+..|..|...-...-.++-|...|-+.... |++.- ...-.+=+.+| -|+++
T Consensus 678 gledA~qfiE----dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~fe 751 (1189)
T KOG2041|consen 678 GLEDAIQFIE----DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFE 751 (1189)
T ss_pred chHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchh
Confidence 3455555544 3578899999999888888889998888776543 32110 01111112222 48899
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 022531 97 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 176 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (295)
+|+++|-+|-+..+ .|..+.+.|+|-...++++.=-....-..-..+++.+...+.....|++|.+ ++..
T Consensus 752 eaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~-yY~~ 821 (1189)
T KOG2041|consen 752 EAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK-YYSY 821 (1189)
T ss_pred Hhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 99999988866532 3556667777766666554311100011123456666666666666666665 3332
Q ss_pred HHH---------------------hcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcC
Q 022531 177 AEK---------------------SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLG 235 (295)
Q Consensus 177 ~~~---------------------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 235 (295)
-.. ...+-+....-.+.+++.+.|.-++|.+.+-+-- .|- ..+..|...+
T Consensus 822 ~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 822 CGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELN 892 (1189)
T ss_pred ccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHH
Confidence 110 0111233334445555555555555555443211 111 2445555666
Q ss_pred ChHHHHHHHHHHhhhcCCCCCHHHHH-HHHHHHHccCChHHHHHHHHHH
Q 022531 236 HLKEVGEIIDQWKQSATSDFDISACN-RLLGAFSDVGLTEKANEFHMLL 283 (295)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m 283 (295)
++.+|.++-++.. -|.+.+.- .-..-+...++..+|.+..+..
T Consensus 893 QW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 6666666554432 23333221 1122334456666666665544
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.04 E-value=0.0034 Score=38.92 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 022531 82 YNEMMTLYMSVGQVEKVALVVEE 104 (295)
Q Consensus 82 ~~~li~~~~~~~~~~~a~~~~~~ 104 (295)
++.+...|...|++++|+..|++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444443
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=97.01 E-value=0.015 Score=41.23 Aligned_cols=90 Identities=8% Similarity=-0.127 Sum_probs=63.2
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCC
Q 022531 157 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 236 (295)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 236 (295)
.--+-..|++++|.. +|.-+....+ -+..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+
T Consensus 44 Ay~~y~~Gk~~eA~~-~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAET-FFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHH-HHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 334457889999988 6665544332 2445566777777788889999988887655442 233344457888888899
Q ss_pred hHHHHHHHHHHhh
Q 022531 237 LKEVGEIIDQWKQ 249 (295)
Q Consensus 237 ~~~A~~~~~~~~~ 249 (295)
.+.|...|.....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998888776
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.94 E-value=0.1 Score=39.22 Aligned_cols=169 Identities=12% Similarity=0.078 Sum_probs=76.4
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc
Q 022531 49 ALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 126 (295)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 126 (295)
.....+...|++.+|...|+++...- -+--....-.++.++.+.|++++|...++++.+.-..-...-+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 34444556666667776666666531 0112234445566666667777777766666553211111112222222111
Q ss_pred -------------cCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHH
Q 022531 127 -------------TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI 193 (295)
Q Consensus 127 -------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 193 (295)
.+...+|...|+.+... . |+ .....+|.. .+..+....-. .--.+.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--y-P~-------------S~y~~~A~~-~l~~l~~~la~----~e~~ia 148 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKR--Y-PN-------------SEYAEEAKK-RLAELRNRLAE----HELYIA 148 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH----TT-------------STTHHHHHH-HHHHHHHHHHH----HHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHH--C-cC-------------chHHHHHHH-HHHHHHHHHHH----HHHHHH
Confidence 11233455555555543 1 22 222233333 22222221111 011244
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCCHH----hHHHHHHHHHhcCChHHH
Q 022531 194 ILYAGLGNKDKIDQIWKSLRMTKQKMTSR----NYICILSSYLMLGHLKEV 240 (295)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~A 240 (295)
..|.+.|.+..|..-++.+.+. -|+.. ....++.+|.+.|..+.|
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 5667777777777777777665 33332 234567777777776644
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=96.91 E-value=0.0083 Score=42.55 Aligned_cols=95 Identities=8% Similarity=-0.065 Sum_probs=72.6
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc
Q 022531 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 126 (295)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 126 (295)
.-....-+-..|++++|..+|.-+...+ +-+..-|..|..++-..+++++|+..|......+. -|...+--...++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHH
Confidence 3344455567899999999999887765 24566778888888888999999999987766543 244555567788889
Q ss_pred cCCHHHHHHHHHHHhhc
Q 022531 127 TLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 127 ~~~~~~a~~~~~~~~~~ 143 (295)
.|+.+.|...|......
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999999988874
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.16 Score=39.72 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=22.2
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022531 56 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105 (295)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 105 (295)
..|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3444455555554444332 122333444444555555555555555444
No 218
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.061 Score=41.48 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=49.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-ChHhHHHHH
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VP-DIFTYNLWI 121 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~li 121 (295)
.|+.-+..+ +.|++..|...|...++.. -.-....+-.|..++...|++++|..+|..+.+.-. .| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444443 3455666666666655542 001122344456666666666666666665554311 11 123444555
Q ss_pred HHHHccCCHHHHHHHHHHHhhc
Q 022531 122 SSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5556666666666666666654
No 219
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.15 Score=39.87 Aligned_cols=147 Identities=10% Similarity=0.015 Sum_probs=98.3
Q ss_pred HHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 022531 20 LMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 98 (295)
Q Consensus 20 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 98 (295)
.....|++.+|...|+......| +...--.++.+|...|+.+.|..++..+....-.........-|..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34567899999999999888766 67788889999999999999999999887654222222222334445555554444
Q ss_pred HHHHHHHHhCCCCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhH
Q 022531 99 ALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169 (295)
Q Consensus 99 ~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (295)
..+-++.... | |...-..+...+...|+.+.|.+.+-.+.++.---.+...-..+++.+.-.|..+.+
T Consensus 223 ~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 223 QDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444444442 4 556666677778888888888887666555423334455566777777666655443
No 220
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.79 E-value=0.092 Score=44.42 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (295)
-.+.++..+-+.|.++.|+++-++- .+ -.....+.|+++.|.++. ...++...|..|.+..
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~---------~~---rFeLAl~lg~L~~A~~~a-------~~~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP---------DH---RFELALQLGNLDIALEIA-------KELDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H---------HH---HHHHHHHCT-HHHHHHHC-------CCCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh---------HH---HhHHHHhcCCHHHHHHHH-------HhcCcHHHHHHHHHHH
Confidence 3555555555555555555543221 11 122334455555555542 1123444555555555
Q ss_pred HhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHH
Q 022531 161 ITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 240 (295)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 240 (295)
.+.|+++-|++ .+.+. .-|..|+-.|...|+.+...++.+.....|- ++....++.-.|++++.
T Consensus 358 L~~g~~~lAe~-c~~k~---------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 358 LRQGNIELAEE-CYQKA---------KDFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHTTBHHHHHH-HHHHC---------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHcCCHHHHHH-HHHhh---------cCccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 56666655555 33321 1234444455555555555555555444431 23333444444555555
Q ss_pred HHHHHH
Q 022531 241 GEIIDQ 246 (295)
Q Consensus 241 ~~~~~~ 246 (295)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.76 E-value=0.029 Score=46.61 Aligned_cols=64 Identities=11% Similarity=-0.065 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHHhC
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTS----ETYTALLHLYAGAKWTEKAEELFERVKQS 73 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (295)
+...++.+..+|.+.|++++|+..|+...+..|+. .+|..+..+|...|++++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677777888888888888888888777766642 34777888888888888888888877765
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.75 E-value=0.057 Score=44.93 Aligned_cols=64 Identities=19% Similarity=0.036 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA----LMYNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
+...|+.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999998875 553 35999999999999999999999999885
No 223
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.74 E-value=0.012 Score=47.77 Aligned_cols=230 Identities=14% Similarity=0.040 Sum_probs=130.5
Q ss_pred HHHHccCcHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH--HHh--CCCCC-ChHhHHHHHH
Q 022531 52 HLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEE--IKR--KNVVP-DIFTYNLWIS 122 (295)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~--m~~--~~~~p-~~~~~~~li~ 122 (295)
.-+|+.|+......+|+..++.|- -| ..+|..|.++|.-.+++++|+++... ... .|-+. .......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 457899999999999999999872 23 34577788888888999999987542 111 01000 1111222333
Q ss_pred HHHccCCHHHHHHHHH----HHhhcCCCCCCHHHHHHHHHHHHhcCc--------------------hhhHHHHHHHHHH
Q 022531 123 SCAATLNIDQVKKFLD----EMSCDSGGSDDWVKYVNLVNIYITASH--------------------LVNAESSTLVEAE 178 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~ 178 (295)
.+--.|.+++|.-.-. -..+.+.-.....++..+...|...|+ ++.|.+ +|.+-.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~-fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK-FYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH-HHHHHH
Confidence 3333445555543211 111111111223345556666654432 222333 322211
Q ss_pred H----hcCC-CccccHHHHHHHHHhcCCHHHHHHHHHHH----HhccCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 179 K----SITQ-RQWITYDFLIILYAGLGNKDKIDQIWKSL----RMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 179 ~----~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
+ .+.. .-...|..|...|.-.|+++.|+...+.= ++-|-+. ....+..+..++.-.|+++.|.+.|....
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 1111 11245666666677789999998776542 2222111 22456678888999999999999887643
Q ss_pred ----hhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 022531 249 ----QSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 283 (295)
Q Consensus 249 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 283 (295)
+-+.........-+|...|.-..++++|+.++.+=
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 22221234456678888888889999999887753
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.73 E-value=0.26 Score=42.31 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=72.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCC-CCCCh-----HhHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCHHHHH-HHH
Q 022531 89 YMSVGQVEKVALVVEEIKRKN-VVPDI-----FTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYV-NLV 157 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~ 157 (295)
..=.|+-+.+++.+.+-.+.+ +.-.. -.|..++..++. ..+.+.|.+++..+.+. -|+...|. .-.
T Consensus 198 vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl~~~g 274 (468)
T PF10300_consen 198 VGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFLFFEG 274 (468)
T ss_pred cCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHHHHHH
Confidence 334466666666666554422 11111 123333333332 23455666666666654 24433332 223
Q ss_pred HHHHhcCchhhHHHHHHHHHHH---hcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHH-HHHHh
Q 022531 158 NIYITASHLVNAESSTLVEAEK---SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL-SSYLM 233 (295)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~ 233 (295)
..+...|+.++|.+ .++.... ...+.....+-.+.-.+.-..+|++|.+.|..+.+.. ..+..+|.-+. .++..
T Consensus 275 R~~~~~g~~~~Ai~-~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 275 RLERLKGNLEEAIE-SFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHhcCHHHHHH-HHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence 44555666666666 5554332 1111122333344445556666666666666665542 23333343222 23334
Q ss_pred cCCh-------HHHHHHHHHH
Q 022531 234 LGHL-------KEVGEIIDQW 247 (295)
Q Consensus 234 ~~~~-------~~A~~~~~~~ 247 (295)
.|+. ++|.++|.+.
T Consensus 353 l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hccchhhhhhHHHHHHHHHHH
Confidence 5555 5566665554
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.71 E-value=0.26 Score=42.34 Aligned_cols=160 Identities=15% Similarity=0.088 Sum_probs=102.9
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCCCHH-----HHHHHHHHHHh----cCchhhHHHHHHHHHHHhcCCCccccHHH
Q 022531 121 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWV-----KYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQRQWITYDF 191 (295)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 191 (295)
+...+=.|+-+.+++.+.+..+..++.-... .|..++..++. ....+.|.+ ++..+...-| +...|..
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~-lL~~~~~~yP--~s~lfl~ 271 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE-LLEEMLKRYP--NSALFLF 271 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH-HHHHHHHhCC--CcHHHHH
Confidence 3334456888999999988776544433222 23344433333 445677888 7777766654 4444433
Q ss_pred H-HHHHHhcCCHHHHHHHHHHHHhccC---CCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHH-
Q 022531 192 L-IILYAGLGNKDKIDQIWKSLRMTKQ---KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA- 266 (295)
Q Consensus 192 l-i~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~- 266 (295)
. .+.+...|++++|++.|+....... +.....+--+..++.-..++++|.+.|..+.+.. ..+..+|..+.-+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHHHHH
Confidence 2 3456778999999999997553211 1122233457778888999999999999999865 3455555555443
Q ss_pred HHccCCh-------HHHHHHHHHHHh
Q 022531 267 FSDVGLT-------EKANEFHMLLLQ 285 (295)
Q Consensus 267 ~~~~g~~-------~~a~~~~~~m~~ 285 (295)
+...|+. ++|.++|.+...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4457777 888888887753
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.098 Score=42.64 Aligned_cols=129 Identities=6% Similarity=0.004 Sum_probs=91.8
Q ss_pred HHHHHccCcHHHHHHHHHHHHhC-----CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh
Q 022531 51 LHLYAGAKWTEKAEELFERVKQS-----NL---------SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT 116 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~-----~~---------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 116 (295)
...+.+.|++..|..-|++.... +. ..-..+++.|.-+|.+.+++.+|++.-++.+..+. +|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhH
Confidence 44566777777777777664321 11 11245678888899999999999999999888743 47777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcC
Q 022531 117 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 182 (295)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (295)
..--..++...|+++.|...|+++++. -|.|-.+-+.++.+-.+.....+..+-+|..|+....
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 777888999999999999999999974 3455556666666666666665553337777776543
No 227
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.62 E-value=0.28 Score=39.64 Aligned_cols=223 Identities=9% Similarity=0.022 Sum_probs=106.4
Q ss_pred hccChhHHHHHHhhcccCC----CCHHHHHHHHHHHHccCcHHHHHHHH-------HHHHhCCCCCCHHHHHHHHHHHHh
Q 022531 23 KVFGIHSGERYFEGLPLSA----KTSETYTALLHLYAGAKWTEKAEELF-------ERVKQSNLSFNALMYNEMMTLYMS 91 (295)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~----p~~~~~~~li~~~~~~~~~~~a~~~~-------~~m~~~~~~p~~~~~~~li~~~~~ 91 (295)
..++.++|+..+..-..+- .-..++..+..+.++.|.+++++..- .+..+.. .--..|..+.+++-+
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~--~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSD--FLLEAYLNLARSNEK 95 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3455666666655444431 12345666666777777766654421 1111111 012344555555555
Q ss_pred cCCHHHHHHHHHHHHhC-CCCC---ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHhc
Q 022531 92 VGQVEKVALVVEEIKRK-NVVP---DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSG----GSDDWVKYVNLVNIYITA 163 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~-~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 163 (295)
.-++.+++.+-..-... |..| ......++..++...+.++++++.|+...+-.. -.....+|..+-+.|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554433321 2222 112333455556666667777777766544211 112234566677777777
Q ss_pred CchhhHHHHHHHHHHHhcCC---Cccc-cHHH-----HHHHHHhcCCHHHHHHHHHHHH----hccCCCC-HHhHHHHHH
Q 022531 164 SHLVNAESSTLVEAEKSITQ---RQWI-TYDF-----LIILYAGLGNKDKIDQIWKSLR----MTKQKMT-SRNYICILS 229 (295)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~---~~~~-~~~~-----li~~~~~~g~~~~a~~~~~~m~----~~~~~~~-~~~~~~li~ 229 (295)
.++++|.- +.....+-... .|.. -|.. |..++...|....|.+.-++.. ..|-++. ......+.+
T Consensus 176 ~D~~Kal~-f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALF-FPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhh-hhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 77777666 44443332111 1221 1211 2234445566666655555432 2221211 112234555
Q ss_pred HHHhcCChHHHHHHHHHHh
Q 022531 230 SYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~ 248 (295)
.|-..|+.+.|+.-|+...
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 5666666666666665543
No 228
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.2 Score=41.11 Aligned_cols=260 Identities=11% Similarity=-0.102 Sum_probs=123.7
Q ss_pred HHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 022531 18 IDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF-NALMYNEMMTLYMSVGQV 95 (295)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~ 95 (295)
-..+-+...+..|+..+....+..| +..-|..-...+..-|++++|+--.+.-.+.. | ....+.-.-+++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhhHHH
Confidence 3444555566677776666666555 44445444555555555555554443322211 1 111222222333333333
Q ss_pred HHHHHHHH---------------HHHhCC-CCCChHhHHHHHH-HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 022531 96 EKVALVVE---------------EIKRKN-VVPDIFTYNLWIS-SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 158 (295)
Q Consensus 96 ~~a~~~~~---------------~m~~~~-~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (295)
.+|...++ ...... -+|...+|..+-. ++.-.|++++|...-....+.. ....+..+++
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld----~~n~~al~vr 209 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD----ATNAEALYVR 209 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc----cchhHHHHhc
Confidence 33333322 111111 1233344444322 3456677777777666655531 1122222222
Q ss_pred H--HHhcCchhhHHHHHHHHHHHhcCCCcc-----------ccHHHHHHHHHhcCCHHHHHHHHHHHHhc---cCCCCHH
Q 022531 159 I--YITASHLVNAESSTLVEAEKSITQRQW-----------ITYDFLIILYAGLGNKDKIDQIWKSLRMT---KQKMTSR 222 (295)
Q Consensus 159 ~--~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~ 222 (295)
. +--.++.+.|.. .+++....++.... ..|..=..-..+.|++.+|.+.|.+.... +..|+..
T Consensus 210 g~~~yy~~~~~ka~~-hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 210 GLCLYYNDNADKAIN-HFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred ccccccccchHHHHH-HHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 2 223455555655 55554443322110 01111112235678888888888776543 2344445
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 223 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
.|........+.|+.++|+.--++..+-. ..-+..|..=..++...++|++|.+-++...+.
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56556666677788888777766655411 111122222233455567777777777776554
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.12 Score=42.12 Aligned_cols=96 Identities=9% Similarity=-0.020 Sum_probs=71.2
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 022531 187 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 266 (295)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (295)
.+++.+..+|.+.+++.+|++.-++....+ ++|....-.=.++|...|+++.|+..|+.+.+.. +-|-.+-+.|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 466778888889999999999888887775 5666666667888999999999999999998854 3455555566655
Q ss_pred HHccCChHH-HHHHHHHHHh
Q 022531 267 FSDVGLTEK-ANEFHMLLLQ 285 (295)
Q Consensus 267 ~~~~g~~~~-a~~~~~~m~~ 285 (295)
-.+..+... ..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 555544443 4678888864
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.3 Score=39.03 Aligned_cols=160 Identities=9% Similarity=-0.076 Sum_probs=97.2
Q ss_pred ccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 022531 24 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQS---NLSFNALMYNEMMTLYMSVGQVEKVA 99 (295)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~ 99 (295)
.|+..+|-..++++.+..| |...+..-=.+|...|+.......++++... ++|-.+.+.....-++...|-+++|+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 4556666666777776666 6777777777888888888888888877644 33323333344455566778888888
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhcCchhhHHHHHHH
Q 022531 100 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD----WVKYVNLVNIYITASHLVNAESSTLV 175 (295)
Q Consensus 100 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (295)
+.-++..+.+. .|...-.++...+-..|++.++.++..+-... ...+ .+-|-...-.+...+.++.|++++-.
T Consensus 196 k~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~--Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 196 KQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD--WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccc--hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 87777776532 35555566666667777888887776543321 1111 12233334455566788888883333
Q ss_pred HHHHhcCCCcc
Q 022531 176 EAEKSITQRQW 186 (295)
Q Consensus 176 ~~~~~~~~~~~ 186 (295)
++.....+.|.
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 34444444444
No 231
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.53 E-value=0.032 Score=43.62 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCChHhHH
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR-----KNVVPDIFTYN 118 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 118 (295)
..++..++..+...|+++.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4578888888889999999999999998875 56788899999999999999999999888765 58888888877
Q ss_pred HHHHHH
Q 022531 119 LWISSC 124 (295)
Q Consensus 119 ~li~~~ 124 (295)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 776663
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.51 E-value=0.16 Score=35.53 Aligned_cols=127 Identities=9% Similarity=0.058 Sum_probs=79.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 022531 117 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILY 196 (295)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 196 (295)
...++..+.+.+.+.....+++.+... + +.+....+.++..|++.+.- ...+ .+.. ..+.......+..|
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~~~-~ll~-~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYDPQ-KEIE-RLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHCHH-HHHH-HHHh------ccccCCHHHHHHHH
Confidence 345666666677788888888887775 3 35666778888888766432 2233 2221 12344555677777
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhc-CChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHc
Q 022531 197 AGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML-GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 269 (295)
Q Consensus 197 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (295)
.+.+.++++..++.++.. +...+..+... ++++.|.+++.+ ..+...|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~-------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK-------QNNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh-------CCCHHHHHHHHHHHHc
Confidence 788888888888776532 22244444444 778888887764 1355577777766654
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.47 E-value=0.31 Score=41.37 Aligned_cols=157 Identities=12% Similarity=0.077 Sum_probs=101.0
Q ss_pred HHHHhcCCHHHHHHHHH--HHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 022531 87 TLYMSVGQVEKVALVVE--EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (295)
....-.++++++.++.+ ++.. .+ | ..-.+.++.-+-+.|.++.|+++-..-. .-.+...+.|
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg 332 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLG 332 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcC
Confidence 34455678888777765 2221 12 2 4457888888889999999998733322 2346667899
Q ss_pred chhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 022531 165 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 244 (295)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 244 (295)
+++.|.+ ......+...|..|.....+.|+++-|++.|.+.. -|..|+-.|.-.|+.+.-.++.
T Consensus 333 ~L~~A~~-------~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 333 NLDIALE-------IAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp -HHHHHH-------HCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHH-------HHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHH
Confidence 9999999 22333467799999999999999999999998643 3566777888899988877777
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 022531 245 DQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 282 (295)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (295)
+.....+ . ++.-..++.-.|+.++..+++.+
T Consensus 397 ~~a~~~~--~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 397 KIAEERG--D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHcc--C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 7666654 2 33445555566777777777654
No 234
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.44 E-value=0.0072 Score=32.68 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=14.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhC
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQS 73 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (295)
+|..+..+|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 235
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.42 E-value=0.35 Score=38.42 Aligned_cols=225 Identities=12% Similarity=0.095 Sum_probs=113.7
Q ss_pred HccCcHHHHHHHHHHHHhCC--CCCCHH------HHHHHHHHHHhcC-CHHHHHHHHHHHHhC--------CCCCCh---
Q 022531 55 AGAKWTEKAEELFERVKQSN--LSFNAL------MYNEMMTLYMSVG-QVEKVALVVEEIKRK--------NVVPDI--- 114 (295)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~--~~p~~~------~~~~li~~~~~~~-~~~~a~~~~~~m~~~--------~~~p~~--- 114 (295)
.+.|+++.|..++.+..... ..|+.. .||.-.. ....+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35667777777777665432 122211 2222222 23344 777766666554322 122332
Q ss_pred --HhHHHHHHHHHccCCH---HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccH
Q 022531 115 --FTYNLWISSCAATLNI---DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY 189 (295)
Q Consensus 115 --~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (295)
.++..++.++...+.. ++|..+++.+....+.+ +.++..-+..+.+.++.+.+.+ .+.+|......+ ...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~-~L~~mi~~~~~~-e~~~ 158 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEE-ILMRMIRSVDHS-ESNF 158 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHH-HHHHHHHhcccc-cchH
Confidence 3556667777766654 45666666676543322 3444455666666777888888 777776655432 2344
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHhccCCCCHHhHH--HHHH---HHHhcCC------hHHHHHHHHHHhhhcCCCCC
Q 022531 190 DFLIILYAG--LGNKDKIDQIWKSLRMTKQKMTSRNYI--CILS---SYLMLGH------LKEVGEIIDQWKQSATSDFD 256 (295)
Q Consensus 190 ~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~---~~~~~~~------~~~A~~~~~~~~~~~~~~~~ 256 (295)
...+..+.. ......+...+..+....+.|....+. .++. ...+.++ ++...++++...+....+.+
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 444444321 223345556665555555555553111 1111 1112211 44555555544333222233
Q ss_pred HHHHHHH-------HHHHHccCChHHHHHHHHHHH
Q 022531 257 ISACNRL-------LGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 257 ~~~~~~l-------~~~~~~~g~~~~a~~~~~~m~ 284 (295)
..+-.++ ...+-+.++++.|.+.|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3332222 234556889999999987544
No 236
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.34 E-value=0.079 Score=41.46 Aligned_cols=82 Identities=9% Similarity=0.001 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhh----cCCCCCCHHHHH
Q 022531 79 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC----DSGGSDDWVKYV 154 (295)
Q Consensus 79 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ 154 (295)
..++..++..+...|+.+.+...++++..... -+...|..+|.+|.+.|+...|+..|+++.+ .-|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 56788899999999999999999999998744 3788999999999999999999999998765 248899988887
Q ss_pred HHHHHHH
Q 022531 155 NLVNIYI 161 (295)
Q Consensus 155 ~l~~~~~ 161 (295)
.......
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 7777643
No 237
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.29 E-value=0.46 Score=38.45 Aligned_cols=110 Identities=17% Similarity=0.104 Sum_probs=85.2
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHH
Q 022531 115 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLII 194 (295)
Q Consensus 115 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 194 (295)
.+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.. +. .. +.+++-|-.++.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~-fa----~s--kKsPIGyepFv~ 245 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEK-FA----KS--KKSPIGYEPFVE 245 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHH-HH----hC--CCCCCChHHHHH
Confidence 455556777788898888877755442 4788899999999999999998777 32 22 345688999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 195 LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
+|...|+..+|..+...+ ++..-+..|.+.|++.+|.+.-.+
T Consensus 246 ~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999998861 224578888999999998776443
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=96.27 E-value=0.57 Score=39.34 Aligned_cols=157 Identities=16% Similarity=0.117 Sum_probs=102.3
Q ss_pred HHHHHHHHhcc-----ChhHHHHHHhhcc---cCCC-CHHHHHHHHHHHHc---------cCcHHHHHHHHHHHHhCCCC
Q 022531 15 ATRIDLMTKVF-----GIHSGERYFEGLP---LSAK-TSETYTALLHLYAG---------AKWTEKAEELFERVKQSNLS 76 (295)
Q Consensus 15 ~~li~~~~~~~-----~~~~A~~~~~~~~---~~~p-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~ 76 (295)
...+.+..... ..+.|..+|.+.. +..| ....|..+..++.. .....+|.++-++..+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 45555554422 3677888999888 5556 35555555443322 234667788888888876 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 022531 77 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 155 (295)
Q Consensus 77 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 155 (295)
-|+.+...+..+..-.++++.|..+|++.... .|| ..+|....-.+.-.|+.++|.+.+++..+.....--..+...
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 67888888888888888899999999998885 444 445555555566779999999999987664222223333334
Q ss_pred HHHHHHhcCchhhHHHHHHH
Q 022531 156 LVNIYITASHLVNAESSTLV 175 (295)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~ 175 (295)
.+..|+.. .+++|.++++.
T Consensus 414 ~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 414 CVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHcCC-chhhhHHHHhh
Confidence 44455544 46677773333
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.25 E-value=0.15 Score=39.34 Aligned_cols=90 Identities=13% Similarity=-0.032 Sum_probs=40.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCC--CChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHhcCchh
Q 022531 91 SVGQVEKVALVVEEIKRKNVV--PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 167 (295)
+.|++.+|...|....+.... -....+.-|..++...|+++.|..+|..+.+..+..| -+..+-.+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555555543211 0112233445555555555555555555544322212 1233444445555555555
Q ss_pred hHHHHHHHHHHHhc
Q 022531 168 NAESSTLVEAEKSI 181 (295)
Q Consensus 168 ~a~~~~~~~~~~~~ 181 (295)
+|.. .+..+.+.-
T Consensus 233 ~A~a-tl~qv~k~Y 245 (262)
T COG1729 233 EACA-TLQQVIKRY 245 (262)
T ss_pred HHHH-HHHHHHHHC
Confidence 5555 555444444
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.22 E-value=0.55 Score=38.63 Aligned_cols=32 Identities=25% Similarity=0.013 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 255 FDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 255 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
.+--.+..++.++.-.|+.++|.+..++|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34445566777788888888888888887764
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.19 E-value=0.65 Score=39.28 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 022531 190 DFLIILYAGLGNKDKIDQIWKSLRMTKQK-MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS 268 (295)
Q Consensus 190 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (295)
..+..++-+.|+.++|++.+++|.+..-. -+......|+.++...+.+.++..++.+..+...++.-...|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 34666667889999999999988754211 12233446899999999999999999887654433333455666554333
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.15 E-value=0.64 Score=38.81 Aligned_cols=130 Identities=10% Similarity=0.199 Sum_probs=67.8
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccH-HHHH
Q 022531 115 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY-DFLI 193 (295)
Q Consensus 115 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li 193 (295)
.+|...++.-.+..-.+.|..+|-++.+.+-..+++.++++++..++. |+...|.. +|+.-.... ||...| +..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~-ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYN-IFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHH-HHHHHHHhC--CCchHHHHHHH
Confidence 445555666555556666666666666653355566666666665543 44555555 444332322 222222 2344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 194 ILYAGLGNKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
..+.+.++-+.|..+|+.-.+. +.- -...|..+|.-=..-|++..+..+=++|..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4445566666666666632221 011 123566666666666666666555555544
No 243
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.14 E-value=0.51 Score=41.18 Aligned_cols=218 Identities=11% Similarity=0.073 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHhccChhH--HHHHHhhcccCC--CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHH--
Q 022531 10 SDSDYATRIDLMTKVFGIHS--GERYFEGLPLSA--KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYN-- 83 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~--A~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-- 83 (295)
+.-.++..=.+|.+-++..- ...-+++++.++ |+.. .+...|+-.|++.+|-++|.+--..+ .-...|+
T Consensus 597 eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDl 671 (1081)
T KOG1538|consen 597 EALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDL 671 (1081)
T ss_pred hhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHH
Confidence 34456677778877776443 333344555442 4433 23455666788888888775432111 0011111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHh--CCC-CCChHhHHHHHHHHHccCCHHHHHHHHHH---------HhhcCCCCC
Q 022531 84 ---EMMTLYMSVGQVEKVALVVEEIKR--KNV-VPDIFTYNLWISSCAATLNIDQVKKFLDE---------MSCDSGGSD 148 (295)
Q Consensus 84 ---~li~~~~~~~~~~~a~~~~~~m~~--~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~---------~~~~~~~~~ 148 (295)
....-+...|..++-..+.++-.+ .++ +|. +....+...|+.++|..+..+ +-.+ -...
T Consensus 672 RMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rk-ld~~ 745 (1081)
T KOG1538|consen 672 RMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARK-LDKA 745 (1081)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhh-cchh
Confidence 122233344444433333322111 111 121 123334455666666544211 1111 1122
Q ss_pred CHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHh-----
Q 022531 149 DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN----- 223 (295)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----- 223 (295)
+..+...+..-+.+...+.-|-+ +|..+-+ ...+++.....++|.+|..+-+..-+ ..|+...
T Consensus 746 ere~l~~~a~ylk~l~~~gLAae-IF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAE-IFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQW 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHH-HHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHH
Confidence 33344444455555666666666 5554422 23456667788888888888775433 2333221
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 224 ------YICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 224 ------~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
|...-++|.++|+-.+|.++++++...
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 344566788888888888888887553
No 244
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.13 E-value=0.65 Score=38.76 Aligned_cols=148 Identities=11% Similarity=0.105 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 022531 79 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKN-VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 157 (295)
Q Consensus 79 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 157 (295)
..+|...|+...+...++.|.++|-+..+.| +.+++..+++.|..++ .|++..|..+|+-=... ++.+..--+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567778888888888999999999999988 6778888888887765 46788888888874442 233334345677
Q ss_pred HHHHhcCchhhHHHHHHHHHHHhcCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHH
Q 022531 158 NIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL 232 (295)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 232 (295)
..+.+.++-+.|.. +|+......... -...|..+|.--...|+...+..+=++|.+. -|...+......-|.
T Consensus 474 ~fLi~inde~nara-LFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARA-LFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHH-HHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 78888888888888 777544433221 1357888888888888888888777777664 444444433444443
No 245
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.12 E-value=0.25 Score=33.76 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=81.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhh
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 168 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (295)
..-.|..++..++..+...+ .+..-+|-+|--....-+-+-..++++.+-+-..+.+-. -...++.+|++.|...+
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---H
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHH
Confidence 34467788888888887764 244445555544445555566667776665532111111 12345566666555443
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 169 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
-.. .-+......|+-+...+++..+.+.+ ++++.....+..+|.+.|+..++.+++.+.-
T Consensus 88 ~vD-------------------~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 88 YVD-------------------LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHH-------------------HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHH-------------------HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 322 33445577888888888888887543 7788888889999999999999999999888
Q ss_pred hhcC
Q 022531 249 QSAT 252 (295)
Q Consensus 249 ~~~~ 252 (295)
+.|.
T Consensus 148 ekG~ 151 (161)
T PF09205_consen 148 EKGL 151 (161)
T ss_dssp HTT-
T ss_pred Hhch
Confidence 8764
No 246
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.03 E-value=0.67 Score=37.95 Aligned_cols=253 Identities=13% Similarity=0.049 Sum_probs=138.7
Q ss_pred ccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022531 24 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 102 (295)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 102 (295)
.|+.+.|.+-|+-|....- -.--...|.-.--+.|.-+.|.+.-++.-..- +--.-.+...+...+..|+|+.|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 4667777777776665311 11112222222334566666666655554432 122446677777777888888888877
Q ss_pred HHHHhCC-CCCChH--hHHHHHHHHH---ccCCHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHhcCchhhHHHHHHH
Q 022531 103 EEIKRKN-VVPDIF--TYNLWISSCA---ATLNIDQVKKFLDEMSCDSGGSDDWV-KYVNLVNIYITASHLVNAESSTLV 175 (295)
Q Consensus 103 ~~m~~~~-~~p~~~--~~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 175 (295)
+.-++.. +.++.. .-..|+.+-. -..+...|...-.+..+ ..|+.. .-..-..++.+.|+..++-. +++
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~-ilE 287 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSK-ILE 287 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhh-HHH
Confidence 7655433 333322 1222332211 11244555554444333 223322 22244567788888888888 788
Q ss_pred HHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCC
Q 022531 176 EAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT-KQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSATS 253 (295)
Q Consensus 176 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 253 (295)
.+-+..+.|+.. ++..+.+.|+ .+..-+++.... .++|| ....-.+..+-...|++..|..--+.....
T Consensus 288 ~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--- 358 (531)
T COG3898 288 TAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--- 358 (531)
T ss_pred HHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh---
Confidence 777777776632 2222344444 333333333221 13444 344456777778888888777665555442
Q ss_pred CCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHhcCCCC
Q 022531 254 DFDISACNRLLGAFSD-VGLTEKANEFHMLLLQKNCAP 290 (295)
Q Consensus 254 ~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~g~~p 290 (295)
.|....|..|.+.-.. .|+-.++...+.+.+..--.|
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 4777777766665543 488888888888877654444
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.01 E-value=0.31 Score=34.03 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=21.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 022531 49 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV 92 (295)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 92 (295)
.++..+...+........++.+...+ +.+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444455555555555555444 24444555555555543
No 248
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.99 E-value=0.33 Score=35.55 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChHhHHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALVVEEIKRK---NVVPDIFTYNL 119 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ 119 (295)
..+..+...|++.|+.+.|++.|.++.+....|. ...+-.+|+.....+++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4667777888888888888888888777654433 234566777777778888777777665543 22122111111
Q ss_pred HHHH--HHccCCHHHHHHHHHHHhh
Q 022531 120 WISS--CAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 120 li~~--~~~~~~~~~a~~~~~~~~~ 142 (295)
...+ +...+++..|-+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1111 3345677777777666544
No 249
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.99 E-value=0.56 Score=37.52 Aligned_cols=129 Identities=12% Similarity=0.139 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHc--cC----CHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHhcCch-
Q 022531 96 EKVALVVEEIKRKNVVPDIFTYNLWISSCAA--TL----NIDQVKKFLDEMSCDSGG--SDDWVKYVNLVNIYITASHL- 166 (295)
Q Consensus 96 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~- 166 (295)
++.+.+++.|.+.|..-+..+|-+..-.... .. ...+|..+|+.|++...+ .++-..+..++.. ...+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455666677777776666555543332222 11 245667777777764222 2222333333322 22222
Q ss_pred ---hhHHHHHHHHHHHhcCCC-ccccHHHHHHHHHh-cCC--HHHHHHHHHHHHhccCCCCHHhHHHH
Q 022531 167 ---VNAESSTLVEAEKSITQR-QWITYDFLIILYAG-LGN--KDKIDQIWKSLRMTKQKMTSRNYICI 227 (295)
Q Consensus 167 ---~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~-~g~--~~~a~~~~~~m~~~~~~~~~~~~~~l 227 (295)
+.++. .++.+.+.+... |..-+.+-+-++.. ... ..++.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~-~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQ-CYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHH-HHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 33444 555555534332 22222222222221 111 44677788888888887777666543
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.99 E-value=0.66 Score=37.59 Aligned_cols=198 Identities=12% Similarity=0.028 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhccChhHHHHH----HhhcccCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHHHh-CCCCC---CHHH
Q 022531 13 DYATRIDLMTKVFGIHSGERY----FEGLPLSAK---TSETYTALLHLYAGAKWTEKAEELFERVKQ-SNLSF---NALM 81 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~----~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p---~~~~ 81 (295)
+|..+..+.++.|.+++++.. .+...+... -...|-.+.+++-+--++.+++.+-..-.. .|..| -...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 344555566666666655432 111111111 233444444454444445555444433221 12222 1233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChHhHHHHHHHHHccCCHHHHHHHHHHHhh---cCCCCCCHH-H
Q 022531 82 YNEMMTLYMSVGQVEKVALVVEEIKRKNV-----VPDIFTYNLWISSCAATLNIDQVKKFLDEMSC---DSGGSDDWV-K 152 (295)
Q Consensus 82 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~-~ 152 (295)
..++..++...+.++++++.|+...+-.. ......|..|...|.+..|+++|.-+.....+ ..++ .++. -
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~k 203 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWSLK 203 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHH
Confidence 44556666666777777777776654211 11234677777777777788877777665443 2122 2232 2
Q ss_pred HHH-----HHHHHHhcCchhhHHHHHHHHHHH-hcCCCccccH----HHHHHHHHhcCCHHHHHHHHHHH
Q 022531 153 YVN-----LVNIYITASHLVNAESSTLVEAEK-SITQRQWITY----DFLIILYAGLGNKDKIDQIWKSL 212 (295)
Q Consensus 153 ~~~-----l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m 212 (295)
|.. +.-++-..|++-+|.+ .-++..+ .....|..++ ..+.+.|...|+.+.|+.-|+..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e-~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAME-CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 322 2334555666666666 4443322 2222233333 24555666777777777666654
No 251
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.98 E-value=0.1 Score=40.56 Aligned_cols=89 Identities=16% Similarity=0.075 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC----------------CHHHHHH
Q 022531 77 FNALMYNEMMTLYMSV-----GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL----------------NIDQVKK 135 (295)
Q Consensus 77 p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------------~~~~a~~ 135 (295)
-|-.+|-..+..+... +..+=.-..++.|.+-|+.-|..+|+.|++.+-+-. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 3556666666665433 456666677888999999999999999998875532 2356889
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 022531 136 FLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
++++|... |+-||..+-..+++++++.+..
T Consensus 145 vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 99999998 9999999999999999888764
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.95 E-value=0.036 Score=29.88 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
+|..+...|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543
No 253
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.79 E-value=0.46 Score=34.20 Aligned_cols=51 Identities=18% Similarity=0.336 Sum_probs=24.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 022531 66 LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 120 (295)
Q Consensus 66 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 120 (295)
.++.+.+.+++|+...+..++..+.+.|++. .+.++.+.++-+|.......
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~ 66 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQ 66 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHH
Confidence 3334444555555555555555555555533 23334444444444444333
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.78 E-value=0.29 Score=33.37 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=51.4
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHH-hcCCCccccHHHH---HHHHHh
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK-SITQRQWITYDFL---IILYAG 198 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l---i~~~~~ 198 (295)
+.+..|+.+.|++.|.+... -.+....+||.-..++--.|+.++|.+ -+++..+ .+.+ ....+.+. ...|..
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALd-DLn~AleLag~~-trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALD-DLNKALELAGDQ-TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHH-HHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence 34566777777777777665 345566677777777777777777766 4554443 2222 22222222 223455
Q ss_pred cCCHHHHHHHHHHHHhcc
Q 022531 199 LGNKDKIDQIWKSLRMTK 216 (295)
Q Consensus 199 ~g~~~~a~~~~~~m~~~~ 216 (295)
.|+-+.|..=|+.....|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 666666666666555544
No 255
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.77 E-value=0.27 Score=35.97 Aligned_cols=96 Identities=11% Similarity=0.197 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHH--
Q 022531 80 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD--IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN-- 155 (295)
Q Consensus 80 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-- 155 (295)
..+..+...|.+.|+.++|++.|.++.+....|. ...+-.+|+...-.+++..+.....+.........++..-+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677888999999999999999999888755444 345677888888889999988888776653211122222221
Q ss_pred HHH--HHHhcCchhhHHHHHHHH
Q 022531 156 LVN--IYITASHLVNAESSTLVE 176 (295)
Q Consensus 156 l~~--~~~~~~~~~~a~~~~~~~ 176 (295)
... .+...+++..|-+ .|-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~-~fl~ 138 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAE-LFLD 138 (177)
T ss_pred HHHHHHHHHhchHHHHHH-HHHc
Confidence 111 1234567777777 4443
No 256
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.68 E-value=0.49 Score=33.66 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=24.0
Q ss_pred HccCcHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 55 AGAKWTEKAEELFERVKQSNLSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
.+.++.+++..++.-+.... |... .-..-...+.+.|+|.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34455555555555554432 2221 1112222344555666666666655443
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.66 E-value=0.24 Score=33.78 Aligned_cols=92 Identities=14% Similarity=-0.089 Sum_probs=68.5
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh---HHHHHHHHHcc
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT---YNLWISSCAAT 127 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~ 127 (295)
.-+.+..|+++.|++.|.+.+.. .+-....||.-..++.-.|+.++|+.=+++..+..-..+-.. |..-...|-..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 45678889999999999988876 355788999999999999999999998888876432223222 33334456778
Q ss_pred CCHHHHHHHHHHHhhc
Q 022531 128 LNIDQVKKFLDEMSCD 143 (295)
Q Consensus 128 ~~~~~a~~~~~~~~~~ 143 (295)
|+-+.|..=|+..-+.
T Consensus 129 g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQL 144 (175)
T ss_pred CchHHHHHhHHHHHHh
Confidence 8888888888876665
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.54 E-value=0.68 Score=39.19 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=49.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 226 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 226 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
.+..++-+.|+.++|.+.+++|.+......+......|+.++...+.+.++..++.+--
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 57778889999999999999998765322345578889999999999999999998864
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.52 E-value=0.96 Score=35.94 Aligned_cols=222 Identities=10% Similarity=0.006 Sum_probs=126.6
Q ss_pred HHhccChhHHHHHHhhcccCC----CC------HHHHHHHHHHHHccC-cHHHHHHHHHHHHhC--------CCCCCH--
Q 022531 21 MTKVFGIHSGERYFEGLPLSA----KT------SETYTALLHLYAGAK-WTEKAEELFERVKQS--------NLSFNA-- 79 (295)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~~----p~------~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~--------~~~p~~-- 79 (295)
..+.|+++.|..++.+.+... |+ ...|+.=... ...+ +++.|...+++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 357899999999998887642 32 2234433334 4455 888887777654332 122333
Q ss_pred ---HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHH
Q 022531 80 ---LMYNEMMTLYMSVGQVE---KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY 153 (295)
Q Consensus 80 ---~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (295)
.+...++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+.+.+|.... .-....+
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~~~ 158 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccchH
Confidence 46778888888887654 566677777554222 35566667788888999999999999999852 2233445
Q ss_pred HHHHHHH---HhcCchhhHHHHHHHHHHHhcCCCccccHHH--HHH---HHHhcCC------HHHHHHHHHHHHh-ccCC
Q 022531 154 VNLVNIY---ITASHLVNAESSTLVEAEKSITQRQWITYDF--LII---LYAGLGN------KDKIDQIWKSLRM-TKQK 218 (295)
Q Consensus 154 ~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--li~---~~~~~g~------~~~a~~~~~~m~~-~~~~ 218 (295)
..++..+ .... ...+.. .+..+......|....|-. ++. ...+.++ .+.+.+++..+.. .+.+
T Consensus 159 ~~~l~~i~~l~~~~-~~~a~~-~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ 236 (278)
T PF08631_consen 159 DSILHHIKQLAEKS-PELAAF-CLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ 236 (278)
T ss_pred HHHHHHHHHHHhhC-cHHHHH-HHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC
Confidence 5555554 3333 334555 4555554444444321211 111 1112111 4445555554332 2334
Q ss_pred CCHHhHHHH-------HHHHHhcCChHHHHHHHHHHh
Q 022531 219 MTSRNYICI-------LSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 219 ~~~~~~~~l-------i~~~~~~~~~~~A~~~~~~~~ 248 (295)
.+..+-.++ ...+.+.++++.|.+.|+-..
T Consensus 237 ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 237 LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 444443332 223457889999999988543
No 260
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.45 E-value=1.3 Score=37.09 Aligned_cols=257 Identities=12% Similarity=0.010 Sum_probs=140.5
Q ss_pred HHhccChhHHHHHHhhcccCCC-C------HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHh
Q 022531 21 MTKVFGIHSGERYFEGLPLSAK-T------SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL--YMS 91 (295)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~~p-~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~ 91 (295)
+-+.+++++|..+|.++.+... + ...-+.++++|.. .+++.....+....+.- | ...|-.|..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 3577899999999998877521 2 3344567777754 55666666666665542 2 3344444444 356
Q ss_pred cCCHHHHHHHHHHHHhC--CCCC------------ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC----CCHHHH
Q 022531 92 VGQVEKVALVVEEIKRK--NVVP------------DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGS----DDWVKY 153 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~--~~~p------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 153 (295)
.+++.+|.+.+....+. +..| |...=+..+.++...|++.++..+++++... -.+ -+..+|
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~-llkrE~~w~~d~y 170 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER-LLKRECEWNSDMY 170 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HhhhhhcccHHHH
Confidence 78899998888776654 3222 2222344567788999999999999998774 333 678888
Q ss_pred HHHHHHHHhcCch--------hhHHHHHHHHHH---Hhc----------CCCccccHHHHHHHHHhc--CCHHHHHHHHH
Q 022531 154 VNLVNIYITASHL--------VNAESSTLVEAE---KSI----------TQRQWITYDFLIILYAGL--GNKDKIDQIWK 210 (295)
Q Consensus 154 ~~l~~~~~~~~~~--------~~a~~~~~~~~~---~~~----------~~~~~~~~~~li~~~~~~--g~~~~a~~~~~ 210 (295)
+-++-++++.=-. +-+-+ .++++. +.. ..|-......++....-. .+..--.++++
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pd-yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPD-YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChH-HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 8877666653211 11111 222111 000 111111122222211110 11111222222
Q ss_pred HHHhccCCCCHHhH-HHHHHHHHhcCChHHHHHHHHHHhhhc---CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 211 SLRMTKQKMTSRNY-ICILSSYLMLGHLKEVGEIIDQWKQSA---TSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 211 ~m~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.-...-+.|+.... ..++..+.. +.+++..+-+.+.... ..+.=+.++..++....+.++...|.+.+.-+.-
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 22334456654332 234444443 4444444433332211 1112345788889999999999999999887764
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.41 E-value=0.8 Score=34.37 Aligned_cols=220 Identities=14% Similarity=0.020 Sum_probs=101.3
Q ss_pred cChhHHHHHHhhcccCCCC---HHHHHHHHHHHHccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 022531 25 FGIHSGERYFEGLPLSAKT---SETYTALLHLYAGAKWTEKAEELFERVKQS-NLSFNALMYNEMMTLYMSVGQVEKVAL 100 (295)
Q Consensus 25 ~~~~~A~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~ 100 (295)
+....+...+.......+. ...+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443332 355555555566666666666666555431 122334455555555555555666666
Q ss_pred HHHHHHhCCCCCChHhHHHHHH-HHHccCCHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHhcCchhhHHHHHHHHH
Q 022531 101 VVEEIKRKNVVPDIFTYNLWIS-SCAATLNIDQVKKFLDEMSCDSGG--SDDWVKYVNLVNIYITASHLVNAESSTLVEA 177 (295)
Q Consensus 101 ~~~~m~~~~~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (295)
.+.........+ ......... .+...|+++.+...+.+.... .. ......+......+...++.+.+.. .+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALE-LLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHH-HHHHH
Confidence 666555533222 111222222 455556666666666655331 11 1122233333333445555555555 44444
Q ss_pred HHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 178 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 178 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
...........+..+...+...++.+.+...+...... .|+ ...+..+...+...+..+.+...+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43332212334444555555555555555555554443 222 22222333333344445555555555444
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.33 E-value=0.85 Score=34.22 Aligned_cols=224 Identities=13% Similarity=-0.028 Sum_probs=157.1
Q ss_pred cCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChHhHHHHHHHHHccCCHHHHH
Q 022531 57 AKWTEKAEELFERVKQSNLS-FNALMYNEMMTLYMSVGQVEKVALVVEEIKRK-NVVPDIFTYNLWISSCAATLNIDQVK 134 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~ 134 (295)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46667777777777665422 13677888888899999999999998887752 23345666777778888888899999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHH-HHHhcCchhhHHHHHHHHHHHhcC--CCccccHHHHHHHHHhcCCHHHHHHHHHH
Q 022531 135 KFLDEMSCDSGGSDDWVKYVNLVN-IYITASHLVNAESSTLVEAEKSIT--QRQWITYDFLIILYAGLGNKDKIDQIWKS 211 (295)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 211 (295)
..+...... ...+ ......... .+...|+++.|.. .+.......+ ......+......+...++.+.+...+..
T Consensus 116 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALAL-DPDP-DLAEALLALGALYELGDYEEALE-LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcC-CCCc-chHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 999988874 2222 222223333 7889999999999 8888755322 12334444444556778999999999998
Q ss_pred HHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 212 LRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 212 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
............+..+...+...++.+.|...+....... +.....+..+...+...|..+.+...+.+...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8776322135667778888888999999999999888743 22244455555555577778998888887765
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.30 E-value=0.72 Score=33.21 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=25.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 226 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 226 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.+++.+...|++-+|+++.+...... .++. ..++++..+.++...-..+++-..+
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~--~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVD--SVPA---RKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcc--cCCH---HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555566655555555432211 1111 2345555555554444444444433
No 264
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.29 E-value=1.1 Score=35.24 Aligned_cols=117 Identities=13% Similarity=0.034 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-cCc-hhhHHHHHHHHHHH-hcCCCccccHHHHHHHHHhcCCHHHH
Q 022531 129 NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT-ASH-LVNAESSTLVEAEK-SITQRQWITYDFLIILYAGLGNKDKI 205 (295)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a 205 (295)
...+|+.+|+.......+.-|..+...+++.... .+. ...-.+ +.+.+.. .+..++..+....+..++..+++.+.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYE-vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYE-VVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHH-HHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 3455666655322211344455555555555444 111 111122 2222222 12344455555666666666666666
Q ss_pred HHHHHHHHhc-cCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 206 DQIWKSLRMT-KQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 206 ~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
.++++..... +..-|...|..+|+.....|+..-..+++++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 6666655433 3344555666666666666666665555543
No 265
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.22 E-value=0.67 Score=32.31 Aligned_cols=76 Identities=9% Similarity=0.010 Sum_probs=44.6
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHh
Q 022531 122 SSCAATLNIDQVKKFLDEMSCDSGGS-DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG 198 (295)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 198 (295)
....+.|++++|.+.|+.+..+.... -...+--.++.+|-+.+++++|.. .+++..+..+...-+.|-..+.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a-~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIA-AYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34456677777777777776642111 123445566677777777777777 66666666555444555555555443
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.20 E-value=0.67 Score=32.29 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=24.3
Q ss_pred ccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 56 GAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
+.|++++|.+.|+.+..+- -+-...+--.|+.+|.+.+++++|...+++..+.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4455555555555554431 0112233344455555555555555555555543
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.13 E-value=0.064 Score=27.41 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 022531 82 YNEMMTLYMSVGQVEKVALVVEE 104 (295)
Q Consensus 82 ~~~li~~~~~~~~~~~a~~~~~~ 104 (295)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.07 E-value=0.028 Score=28.75 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=15.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH
Q 022531 260 CNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 260 ~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
|..|...|.+.|++++|.+++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 269
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=1.8 Score=35.84 Aligned_cols=154 Identities=12% Similarity=0.006 Sum_probs=79.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH--HHccCCHHHHHHHHHHHhhcCCCCCCHHHHH---HH------
Q 022531 88 LYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS--CAATLNIDQVKKFLDEMSCDSGGSDDWVKYV---NL------ 156 (295)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l------ 156 (295)
++...|+.++|.+.--..++..- ...+...+++ +--.++.+.|...|++.... .|+...-. ..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHHH
Confidence 34556777777666555554321 1223333333 23445666777777666653 23322111 11
Q ss_pred ----HHHHHhcCchhhHHHHHHHHHHHhcC---CCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-HHhHHHHH
Q 022531 157 ----VNIYITASHLVNAESSTLVEAEKSIT---QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICIL 228 (295)
Q Consensus 157 ----~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li 228 (295)
.+-..+.|++..|.+ .+.+.....+ .++...|.....+..+.|+..+|+.--++..+. .|. ...|..-.
T Consensus 252 ~k~~gN~~fk~G~y~~A~E-~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra 328 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYE-CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRA 328 (486)
T ss_pred HHhhhhhHhhccchhHHHH-HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHH
Confidence 123346677777777 6665554322 334445555555666777777777766655432 111 11122233
Q ss_pred HHHHhcCChHHHHHHHHHHhhh
Q 022531 229 SSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
.++...+++++|.+-|+...+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566777777777666553
No 270
>PRK11906 transcriptional regulator; Provisional
Probab=94.45 E-value=2.7 Score=35.56 Aligned_cols=158 Identities=8% Similarity=-0.019 Sum_probs=81.2
Q ss_pred HHHHHHHHccC-----CHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhc---------CchhhHHHHHHHHHHHhcC
Q 022531 118 NLWISSCAATL-----NIDQVKKFLDEMSCDSGGSDD-WVKYVNLVNIYITA---------SHLVNAESSTLVEAEKSIT 182 (295)
Q Consensus 118 ~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~ 182 (295)
...+++..... ..+.|+.+|.+........|+ ...|..+..++... ....+|.+ ..++..+..
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~-~A~rAveld- 334 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALE-LLDYVSDIT- 334 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH-HHHHHHhcC-
Confidence 55555544321 245677777777732222333 34444444333221 12233444 333333333
Q ss_pred CCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHH
Q 022531 183 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 261 (295)
Q Consensus 183 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 261 (295)
..|......+..+....++++.+..+|++.... .||. ..|......+.-.|+.++|.+.+++..+....+.-.....
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 235555556666666677788888888877664 4554 3344444455567888888888887665432222223333
Q ss_pred HHHHHHHccCChHHHHHHH
Q 022531 262 RLLGAFSDVGLTEKANEFH 280 (295)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~ 280 (295)
..++.|+..+ .+.|..++
T Consensus 413 ~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 413 ECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHcCCc-hhhhHHHH
Confidence 3344555444 34444444
No 271
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.37 E-value=1.2 Score=31.24 Aligned_cols=50 Identities=10% Similarity=-0.000 Sum_probs=22.4
Q ss_pred ccChhHHHHHHhhcccCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhC
Q 022531 24 VFGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWTEKAEELFERVKQS 73 (295)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (295)
.++++++..+++-|.-..|+ ...-..-...+...|++.+|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555554444331 111111222333455555555555555544
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.32 E-value=0.14 Score=25.59 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=16.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 259 ACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+|..+..+|...|++++|...|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.30 E-value=1.3 Score=31.51 Aligned_cols=117 Identities=16% Similarity=0.021 Sum_probs=61.1
Q ss_pred HHHHHHH---HHHhcCchhhHHHHHHHHHHHhcCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHH
Q 022531 152 KYVNLVN---IYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICI 227 (295)
Q Consensus 152 ~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 227 (295)
+.+.|+. .-.+.++.+++.. ++..+.--.+.. ...++.. ..+...|++.+|+++|+++.+.. |....-..|
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~-lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEA-LLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHH-HHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 4444444 3456778888888 777665444331 2222322 34578899999999999986653 333233344
Q ss_pred HHHHHhcCChHHHHHHHH-HHhhhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 022531 228 LSSYLMLGHLKEVGEIID-QWKQSATSDFDISACNRLLGAFSDVGLTEKANE 278 (295)
Q Consensus 228 i~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 278 (295)
+..|....+ +-.++.+- ++.+.+. .|+.. .++..+....+...|..
T Consensus 84 lA~CL~~~~-D~~Wr~~A~evle~~~-d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALG-DPSWRRYADEVLESGA-DPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcC-ChHHHHHHHHHHhcCC-ChHHH---HHHHHHHHhccccchhh
Confidence 444433222 22344443 3444332 23332 35556655555544443
No 274
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.30 E-value=0.58 Score=30.29 Aligned_cols=60 Identities=8% Similarity=-0.002 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 022531 204 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 265 (295)
Q Consensus 204 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 265 (295)
+..+-++.+....+-|++....+.+++|.|.+++..|.++|+..+.+... ....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence 55666667777778899999999999999999999999999988776543 2336777764
No 275
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.25 E-value=0.032 Score=28.16 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHccCcHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKA 63 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a 63 (295)
+...|+.+...+...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444444444444
No 276
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.24 E-value=2.6 Score=34.71 Aligned_cols=220 Identities=10% Similarity=-0.020 Sum_probs=143.5
Q ss_pred HHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHHh---cC
Q 022531 21 MTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSN-LSFNALM--YNEMMTLYMS---VG 93 (295)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~--~~~li~~~~~---~~ 93 (295)
.-+.|..+.|..+-+......| -...+.+.+...+..|+|+.|+++++.-++.. +.++..- --.|+.+-.. ..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 3567888899998888887767 57799999999999999999999999766543 3444331 2233333221 13
Q ss_pred CHHHHHHHHHHHHhCCCCCChHh-HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHH
Q 022531 94 QVEKVALVVEEIKRKNVVPDIFT-YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS 172 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (295)
+...|...-.+..+ +.||..- -..-..++.+.|+..++-.+++.+.+. .|.+.+. .+-.+.+.|+.....--
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia--~lY~~ar~gdta~dRlk 316 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIA--LLYVRARSGDTALDRLK 316 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHH--HHHHHhcCCCcHHHHHH
Confidence 45556555544444 4566433 333456789999999999999999986 3555442 23334555554322210
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHH-hcCChHHHHHHHHHHhhh
Q 022531 173 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL-MLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~~~~~ 250 (295)
-...+ ....+.+...-..+..+-...|++..|..--+.... ..|....|..|.+.-. ..||-.++.+.+.+..+.
T Consensus 317 Ra~~L-~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 317 RAKKL-ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHH-HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 12222 223333555556667777788888888776665544 3788888888877654 459999999998887763
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.24 E-value=2.6 Score=34.61 Aligned_cols=193 Identities=12% Similarity=0.035 Sum_probs=92.4
Q ss_pred HHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC---CC-CCHHHHHHHHHHHHhc
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSN---LS-FNALMYNEMMTLYMSV 92 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~-p~~~~~~~li~~~~~~ 92 (295)
..++.-+.|+++...+.........++...+.++... +.++++++....+.....- +. .....|...-....+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4567778888888777777776655566666666555 7788888888877665431 00 0112222222222222
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc-----cCCHHHHHHHH---HHHhhc-CCCCCCHHHHHHHHHHHHhc
Q 022531 93 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA-----TLNIDQVKKFL---DEMSCD-SGGSDDWVKYVNLVNIYITA 163 (295)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-----~~~~~~a~~~~---~~~~~~-~~~~~~~~~~~~l~~~~~~~ 163 (295)
..+.+..++.+-..... .+......++..... ..+++.-..++ ..+... ........++..++..+.+.
T Consensus 82 q~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~ 159 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKA 159 (352)
T ss_pred hHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHC
Confidence 22222222222111100 001111111111110 11111111111 111110 01234445677777777788
Q ss_pred CchhhHHHHHHHHHHHhcCCC---ccccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 164 SHLVNAESSTLVEAEKSITQR---QWITYDFLIILYAGLGNKDKIDQIWKSLRM 214 (295)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 214 (295)
|+++.|.. .+..+....... .....-.-+...-..|+..+|+..++...+
T Consensus 160 g~~~~A~~-~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 160 GNFQLALS-ALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred CCcHHHHH-HHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888877 666665533221 222333344455667777777777777665
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=3.2 Score=37.63 Aligned_cols=246 Identities=11% Similarity=0.053 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccC------------------CCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLS------------------AKTSETYTALLHLYAGAKWTEKAEELFERVK 71 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 71 (295)
+..+.+.++.+|...+++-.-.-+++.+.+. .-.......-+..+.+...++.|+.+-+
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk--- 358 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAK--- 358 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHH---
Confidence 4455677777777777744333333322111 0123344556777777788888877654
Q ss_pred hCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022531 72 QSNLSFNALMYNEMMTL----YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGS 147 (295)
Q Consensus 72 ~~~~~p~~~~~~~li~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 147 (295)
..+. |..+...+... +.+.|++++|...|-+-... +.|. .+|.-|....+..+--.+++.+.+. |..
T Consensus 359 ~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~-gla 429 (933)
T KOG2114|consen 359 SQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKK-GLA 429 (933)
T ss_pred hcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHc-ccc
Confidence 3333 34444444444 45789999999888766543 3333 3566667777788888888888886 543
Q ss_pred CCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCc-cccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHH
Q 022531 148 DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ-WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 226 (295)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 226 (295)
+...-+.|+.+|.+.++.+.-.+ +.. .+.... ..-....+..+.+.+-.++|..+-..... +...
T Consensus 430 -~~dhttlLLncYiKlkd~~kL~e-fI~----~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~v--- 495 (933)
T KOG2114|consen 430 -NSDHTTLLLNCYIKLKDVEKLTE-FIS----KCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWV--- 495 (933)
T ss_pred -cchhHHHHHHHHHHhcchHHHHH-HHh----cCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHH---
Confidence 44555789999999999988777 433 232111 11244556666777777777766554332 2333
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 227 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
+--.+-..+++++|++++..+.-.... +....|.. .+. ....++...++-+....
T Consensus 496 l~ille~~~ny~eAl~yi~slp~~e~l-~~l~kyGk---~Ll-~h~P~~t~~ili~~~t~ 550 (933)
T KOG2114|consen 496 LDILLEDLHNYEEALRYISSLPISELL-RTLNKYGK---ILL-EHDPEETMKILIELITE 550 (933)
T ss_pred HHHHHHHhcCHHHHHHHHhcCCHHHHH-HHHHHHHH---HHH-hhChHHHHHHHHHHHhh
Confidence 333345678899999999875322211 22223322 222 23455666666555443
No 279
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.20 E-value=0.52 Score=30.19 Aligned_cols=46 Identities=9% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 97 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
++.+-++.+....+.|++....+.+++|-+.+++..|..+|+.++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555555553
No 280
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.18 E-value=1.1 Score=33.26 Aligned_cols=81 Identities=7% Similarity=-0.034 Sum_probs=60.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHHhcCch
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD--SGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
..+.|+ ++|.+.|-++...+.--++.....|...|. ..+.++++.++.+.... .+-.+|+.++.+|+..|-+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444454 678888888888776656666666666665 56889999988887653 13367888999999999999999
Q ss_pred hhHHH
Q 022531 167 VNAES 171 (295)
Q Consensus 167 ~~a~~ 171 (295)
+.|.-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 98854
No 281
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=2.5 Score=34.05 Aligned_cols=150 Identities=11% Similarity=-0.012 Sum_probs=80.5
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH----HHHHHccCCHHH
Q 022531 57 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW----ISSCAATLNIDQ 132 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l----i~~~~~~~~~~~ 132 (295)
.|++.+|-..++++.+. .|.|..+++..=.+|.-.|+.+.-...+++.... ..||...|..+ .-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45556666666666654 4556666666666777777776666666666543 23343333222 222345667777
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCc---cccHHHHHHHHHhcCCHHHHHHHH
Q 022531 133 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ---WITYDFLIILYAGLGNKDKIDQIW 209 (295)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~ 209 (295)
|.+.-++..+- .+.|...-.+....+.-.|+..++.+ +..+-...-...+ ..-|-...-.+...+.++.|+++|
T Consensus 194 AEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~e-FM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKE-FMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHH-HHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77766666552 34555555666666667777777766 4333221111000 011112222334456777777777
Q ss_pred HH
Q 022531 210 KS 211 (295)
Q Consensus 210 ~~ 211 (295)
++
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 54
No 282
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.08 E-value=2.1 Score=33.02 Aligned_cols=54 Identities=9% Similarity=-0.012 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCC--CCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 90 MSVGQVEKVALVVEEIKRKNV--VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.+.|++++|.+.|+.+...-+ +-...+.-.++.++-+.++++.|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 344555555555555543311 001222333344444555555555555554443
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=0.5 Score=37.44 Aligned_cols=99 Identities=18% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCC-----C--CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC
Q 022531 6 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-----K--TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN 78 (295)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-----p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 78 (295)
|...+..+...++..-....+++.+...+-.++... | +.++| ++.|. .-+.++++-++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHHH-ccChHHHHHHHhCcchhccccc
Confidence 444455555566666666777888888777776651 2 23333 33332 2456688888888888888889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 79 ALMYNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 79 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
..+++.+|..+.+.+++.+|.++...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999998888888887776654
No 284
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.01 E-value=2.4 Score=33.41 Aligned_cols=64 Identities=9% Similarity=0.059 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh-cCCCccccHHHHHHHHHhcCCHHHHHHHHH
Q 022531 146 GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS-ITQRQWITYDFLIILYAGLGNKDKIDQIWK 210 (295)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 210 (295)
..++..+...++..++..+++..-.+ +++..... ++..|...|..+|..-...|+..-...+.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~-fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQ-FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHH-HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 44555555566666666666666666 44444333 344456666666666666666555444443
No 285
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.98 E-value=0.7 Score=29.60 Aligned_cols=63 Identities=8% Similarity=-0.034 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 022531 201 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 265 (295)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 265 (295)
+.-++.+-++.+....+-|++....+.+++|-|.+|+..|.++|+..+.+.. .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3345666667777777889999999999999999999999999998775542 24446766664
No 286
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.95 E-value=2.9 Score=36.93 Aligned_cols=124 Identities=14% Similarity=-0.078 Sum_probs=51.8
Q ss_pred HHhcCchhhHHHHHHHHHHHh----cCCCccccHHHHHHHHHhcC-----CHHHHHHHHHHHHhccCCCCHHhHHHHHHH
Q 022531 160 YITASHLVNAESSTLVEAEKS----ITQRQWITYDFLIILYAGLG-----NKDKIDQIWKSLRMTKQKMTSRNYICILSS 230 (295)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 230 (295)
++...+.+.|.. ++...... -..-......-+..+|.+.. +.+.|..++....+.| .|+...+...+..
T Consensus 259 ~g~~~d~e~a~~-~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 259 YGVTQDLESAIE-YLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccccHHHHHH-HHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 334455566666 55544430 00002223344444444422 3445666665555554 3333332222211
Q ss_pred HHh-cCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH--ccCChHHHHHHHHHHHhcC
Q 022531 231 YLM-LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS--DVGLTEKANEFHMLLLQKN 287 (295)
Q Consensus 231 ~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~g 287 (295)
... ..+...|.++|....+.|. +....+-.+..... ...+.+.|..++++..++|
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGH--ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 111 1344556666665555442 22322222111111 2234555555555555555
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.94 E-value=0.082 Score=26.62 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=19.3
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 022531 68 ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 99 (295)
Q Consensus 68 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 99 (295)
++.++.. |-+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 345667777777777777777764
No 288
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.83 E-value=0.058 Score=37.90 Aligned_cols=129 Identities=15% Similarity=0.075 Sum_probs=77.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhc
Q 022531 120 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL 199 (295)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 199 (295)
++..+.+.+.++....+++.+... +...+....+.++..|++.+..+...+ ++. ..+..-...++..|.+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~-~L~-------~~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLE-FLK-------TSNNYDLDKALRLCEKH 83 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHH-TTT-------SSSSS-CTHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHH-Hcc-------cccccCHHHHHHHHHhc
Confidence 566777777888888888888865 445667778888888888877777777 333 11223334566667777
Q ss_pred CCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCCh
Q 022531 200 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLT 273 (295)
Q Consensus 200 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 273 (295)
|.++++.-++.++....- .+..+...++++.|.++..+ .++...|..++..|...+..
T Consensus 84 ~l~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp TSHHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTCT
T ss_pred chHHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCcc
Confidence 777777776665432211 11113344555555533322 24567788888877766653
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.80 E-value=1.8 Score=31.28 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=52.4
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-hHHHHH--HHHHccCCHH
Q 022531 56 GAKWTEKAEELFERVKQSNLSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF-TYNLWI--SSCAATLNID 131 (295)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li--~~~~~~~~~~ 131 (295)
+.+..++|+.-|.++.+.|..--+. .---+.....+.|+...|...|++.-.....|-+. -..-|= -.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555555544211110 11111222344555555555555554433333222 111111 1133455555
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 022531 132 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 179 (295)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (295)
....-.+.+-.. +.+.-...-.+|.-+-.+.|++.+|.+ +|..+..
T Consensus 150 dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~-~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKS-WFVQIAN 195 (221)
T ss_pred HHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHH-HHHHHHc
Confidence 555554444433 333333344445555555555555555 5554444
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.76 E-value=1.2 Score=32.79 Aligned_cols=126 Identities=11% Similarity=0.045 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCC-CCHH-HHH--HHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHH---
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSE-TYT--ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYN--- 83 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-p~~~-~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--- 83 (295)
...|..++.... .+.. +.....+.+.... .+.. ++. .+...+..++++++|..-++..... |....+.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 346777777764 3333 4444555555543 3443 333 3456788999999999999877654 2223333
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 84 --EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 84 --~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.|.+.....|.+++|+++++.....+.. ......-.+.+...|+-++|..-|++....
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 4555677889999999999988776543 334555677789999999999999998886
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.70 E-value=6.5 Score=37.29 Aligned_cols=219 Identities=11% Similarity=0.028 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHccC--cHHHHHHHHHHHHhCCCCC--------------CHHHHHHHHH----------HHHhcCCH
Q 022531 42 KTSETYTALLHLYAGAK--WTEKAEELFERVKQSNLSF--------------NALMYNEMMT----------LYMSVGQV 95 (295)
Q Consensus 42 p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p--------------~~~~~~~li~----------~~~~~~~~ 95 (295)
|+ .-.-.+|.+|++.+ .++.++....+.......+ ....||..+. +-....++
T Consensus 789 ~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~SqkDP 867 (1265)
T KOG1920|consen 789 PD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKSQKDP 867 (1265)
T ss_pred cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHhccCh
Confidence 44 44556777888777 6777777766666421111 1223333222 22344567
Q ss_pred HHHHHHHHHHHhC-----CCCCCh--HhHHHHHHHHHccC--CHHHHHHHHHH------HhhcCCCCCCHHHHHHH----
Q 022531 96 EKVALVVEEIKRK-----NVVPDI--FTYNLWISSCAATL--NIDQVKKFLDE------MSCDSGGSDDWVKYVNL---- 156 (295)
Q Consensus 96 ~~a~~~~~~m~~~-----~~~p~~--~~~~~li~~~~~~~--~~~~a~~~~~~------~~~~~~~~~~~~~~~~l---- 156 (295)
.+-+.+++++++. ....|. .-|...+......| -+++++.+.++ ... -..|+...+..+
T Consensus 868 kEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~--ly~~~~e~~k~i~~~y 945 (1265)
T KOG1920|consen 868 KEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALA--LYKPDSEKQKVIYEAY 945 (1265)
T ss_pred HHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhh--eeccCHHHHHHHHHHH
Confidence 7777777776632 111121 22444444444444 34555544332 111 134555444433
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCC
Q 022531 157 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 236 (295)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 236 (295)
...+...+.+++|.- .|+..- + ...-+.+|...|+|.+|..+..++....-+ -..+-..|+.-+...++
T Consensus 946 a~hL~~~~~~~~Aal-~Ye~~G----k-----lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 946 ADHLREELMSDEAAL-MYERCG----K-----LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHHhccccHHHH-HHHHhc----c-----HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHccc
Confidence 344445666776666 444321 1 123456677788888888877766432100 01112457777888888
Q ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 022531 237 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 283 (295)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 283 (295)
.-+|-++..+... .|.. .+..|++...+++|.++....
T Consensus 1015 h~eAa~il~e~~s----d~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLS----DPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhc----CHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 8888888877644 2222 355677777788887765543
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.59 E-value=0.25 Score=24.59 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 022531 82 YNEMMTLYMSVGQVEKVALVVEEIK 106 (295)
Q Consensus 82 ~~~li~~~~~~~~~~~a~~~~~~m~ 106 (295)
|..+..+|...|++++|+..|++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3344444444444444444444433
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.32 E-value=2.3 Score=30.84 Aligned_cols=137 Identities=12% Similarity=0.012 Sum_probs=74.0
Q ss_pred hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccc-cHHH
Q 022531 114 IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV-KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI-TYDF 191 (295)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 191 (295)
..+|...++ +++.+..++|+.-|.++.+. |...-+. .---........|+...|.. .|.++-.....|-.. -..-
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~-aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVA-AFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHH-HHHHHhccCCCcchhhHHHH
Confidence 344444443 24556677777777777765 3322221 12223344556677777777 777665544444322 1111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCC
Q 022531 192 LII--LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS 253 (295)
Q Consensus 192 li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 253 (295)
|=. .+..+|.++++....+-+...+-..-...-..|.-+-.+.|++.+|.+.|..+..+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a 199 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA 199 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC
Confidence 111 23456777777776666554432221222234555666788888888888887765543
No 294
>PRK09687 putative lyase; Provisional
Probab=93.30 E-value=3.4 Score=32.86 Aligned_cols=218 Identities=8% Similarity=-0.011 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCChHhH
Q 022531 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV----EKVALVVEEIKRKNVVPDIFTY 117 (295)
Q Consensus 42 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~~~ 117 (295)
+|..+....+.++...|. +.+...+..+... +|...-...+.++.+.|+. +++...+..+... .|+...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 666677777777777665 3444444444433 3566666667777777653 4567777666332 3555555
Q ss_pred HHHHHHHHccCCH-----HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHH
Q 022531 118 NLWISSCAATLNI-----DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL 192 (295)
Q Consensus 118 ~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 192 (295)
...+.+++..+.. ..+...+...... ++..+-...+.++++.++ +.+.. .+..+.+ .++...-..-
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D----~~~~VR~~a~~aLg~~~~-~~ai~-~L~~~L~---d~~~~VR~~A 179 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFD----KSTNVRFAVAFALSVIND-EAAIP-LLINLLK---DPNGDVRNWA 179 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhC----CCHHHHHHHHHHHhccCC-HHHHH-HHHHHhc---CCCHHHHHHH
Confidence 5555565554321 2233333333332 355565666777776665 34445 3333333 2333333444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccC
Q 022531 193 IILYAGLG-NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG 271 (295)
Q Consensus 193 i~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 271 (295)
+.++++.+ ....+...+..+.. .++..+-...+.++.+.|+. .|...+-...+.+ +. ....+.++...|
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~----~~--~~~a~~ALg~ig 249 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG----TV--GDLIIEAAGELG 249 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC----ch--HHHHHHHHHhcC
Confidence 44444432 13345555554443 44556666677777777774 4555554444422 22 235667777777
Q ss_pred ChHHHHHHHHHHHh
Q 022531 272 LTEKANEFHMLLLQ 285 (295)
Q Consensus 272 ~~~~a~~~~~~m~~ 285 (295)
.. +|...+..+.+
T Consensus 250 ~~-~a~p~L~~l~~ 262 (280)
T PRK09687 250 DK-TLLPVLDTLLY 262 (280)
T ss_pred CH-hHHHHHHHHHh
Confidence 74 56777766665
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.24 E-value=0.29 Score=24.21 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=14.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 260 CNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 260 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
|..+..++...|++++|.+.|++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555666666655555554
No 296
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.17 E-value=2.9 Score=31.58 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=20.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 222 RNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
.||=-+..-+...|+.++|..+|+-.....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 455567777777777777777777666544
No 297
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.16 E-value=5 Score=34.41 Aligned_cols=180 Identities=12% Similarity=0.057 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 022531 77 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 156 (295)
Q Consensus 77 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 156 (295)
.|....-+++..+.....+.-++.+..+|..-| -+-..|..++.+|... ..++-..+++++.+- .-.+...-..+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReL 138 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGREL 138 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHH
Confidence 355556667777777777777777777777643 3556677777777766 456666677766653 23344444555
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHhcCCCc-----cccHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCCCCHHhHHHHHHH
Q 022531 157 VNIYITASHLVNAESSTLVEAEKSITQRQ-----WITYDFLIILYAGLGNKDKIDQIWKSLRM-TKQKMTSRNYICILSS 230 (295)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~ 230 (295)
...|.+ ++.+.+.. +|..+.....+.. ...|..|+.. -..+.+....+...+.. .|...-...+.-+-.-
T Consensus 139 a~~yEk-ik~sk~a~-~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYEK-IKKSKAAE-FFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-hchhhHHH-HHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 555555 66666666 5665555443311 1234444321 13455555555555533 2333333444455566
Q ss_pred HHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 022531 231 YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF 267 (295)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (295)
|....++++|++++....+.. ..|+.+-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d--~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD--EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc--chhhhHHHHHHHHH
Confidence 667777777777777666644 34555555555443
No 298
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.10 E-value=3.8 Score=32.87 Aligned_cols=132 Identities=9% Similarity=0.220 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCChHhHHHHHHHHHccCC-
Q 022531 60 TEKAEELFERVKQSNLSFNALMYNEMMTLYMS--VG----QVEKVALVVEEIKRKNV---VPDIFTYNLWISSCAATLN- 129 (295)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~- 129 (295)
+++.+.+++.|++.|++-+..+|-+....... .. ...+|..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56678889999999998888777653333332 22 35679999999998752 3455666666554 3333
Q ss_pred ---HHHHHHHHHHHhhcCCCCCCHH--HHHHHHHHHHhcCc--hhhHHHHHHHHHHHhcCCCccccHHHHHHH
Q 022531 130 ---IDQVKKFLDEMSCDSGGSDDWV--KYVNLVNIYITASH--LVNAESSTLVEAEKSITQRQWITYDFLIIL 195 (295)
Q Consensus 130 ---~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 195 (295)
.+.+..+|+.+... |+..+-. ..+.++........ ...+.+ +++.+.+.+.+.....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~-l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIE-LYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHH-HHHHHHHcCCccccccccHHHHH
Confidence 36677888888885 5544332 33333333222222 346667 78888888888877777665443
No 299
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.99 E-value=3.4 Score=31.96 Aligned_cols=184 Identities=13% Similarity=0.089 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 120 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 120 (295)
-...|+.-+ .-.+.|++++|.+.|+.+...- -+-...+--.++.++.+.+++++|+..+++....-......-|..-
T Consensus 34 ~~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 334455444 4457899999999999998653 1223456667788899999999999999998875332223345555
Q ss_pred HHHHHcc-------CCH---HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHH
Q 022531 121 ISSCAAT-------LNI---DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD 190 (295)
Q Consensus 121 i~~~~~~-------~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (295)
|.+.+.. .|. ..|..-|++.... .|.+..+ .+|.. ....+....-. -=.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya--------------~dA~~-~i~~~~d~LA~----~Em 171 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSRYA--------------PDAKA-RIVKLNDALAG----HEM 171 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCcch--------------hhHHH-HHHHHHHHHHH----HHH
Confidence 5554432 233 3344444455543 2222221 11111 11111110000 001
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCCHH---hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 191 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR---NYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 191 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
.+...|.+.|.+..|..-+++|.+. .+-+.. .+-.+..+|...|-.++|.+.-.-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3456788888888888888888876 222222 244577788888888888876665544
No 300
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.93 E-value=1.9 Score=31.99 Aligned_cols=80 Identities=10% Similarity=-0.020 Sum_probs=60.0
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHH---hcCCCccccHHHHHHHHHhc
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK---SITQRQWITYDFLIILYAGL 199 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~ 199 (295)
-..+.|+ +.|...|-++... +.-.++.....+...|. ..+.+++.. ++....+ .+..+|+..+.+|+..|.+.
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~-ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQ-LLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHH-HHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 3456666 5688888888876 55567777777777776 567888888 5555554 23357888999999999999
Q ss_pred CCHHHHH
Q 022531 200 GNKDKID 206 (295)
Q Consensus 200 g~~~~a~ 206 (295)
|+.+.|.
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9999885
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.87 E-value=1.7 Score=28.23 Aligned_cols=60 Identities=10% Similarity=0.199 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 022531 97 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 158 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (295)
+..+-++.+....+.|++....+.+++|-+.+++..|..+|+.++.+.+ +...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455556666666677777777777777777777777777777666533 22225555543
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.79 E-value=0.37 Score=25.14 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022531 80 LMYNEMMTLYMSVGQVEKVALVVEEIK 106 (295)
Q Consensus 80 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 106 (295)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555555666666655555543
No 303
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.57 E-value=2.3 Score=31.36 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=49.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCCHHhHH-----HHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 022531 194 ILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI-----CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS 268 (295)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-----~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (295)
..+...|++++|+.-++..... |....+. .|.+.....|.+|+|+..++.....+ ........-.+.+.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES---WAAIVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHhhhHHH
Confidence 3455666677776666654432 2222222 24455566777777777776654432 12223334456677
Q ss_pred ccCChHHHHHHHHHHHhcC
Q 022531 269 DVGLTEKANEFHMLLLQKN 287 (295)
Q Consensus 269 ~~g~~~~a~~~~~~m~~~g 287 (295)
..|+-++|+.-|...++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777776655
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.54 E-value=0.34 Score=25.27 Aligned_cols=28 Identities=36% Similarity=0.311 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 258 SACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777788888888888888777654
No 305
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.39 E-value=1 Score=33.85 Aligned_cols=76 Identities=12% Similarity=0.021 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQS--NLSFNALMYNEMMTL 88 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~ 88 (295)
+.+..++.+.+.+.+++|+...+.-.+..| |...-..++..+|-.|++++|..-++-.-.. ...+-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345556677777777777777666555555 6667777777777888888877766654432 223445566666665
No 306
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=4.1 Score=31.38 Aligned_cols=90 Identities=12% Similarity=0.242 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhcC----CCc-cccHHHHHHHHHhcCCHHHHHHHHHHHHhccC---CCCHHhH
Q 022531 153 YVNLVNIYITASHLVNAESSTLVEAEKSIT----QRQ-WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ---KMTSRNY 224 (295)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~ 224 (295)
+......+.+...+++|-. .+.+-..... -++ ...|-..|-.|....++..|...++.--..+- .-+..+.
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~-a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAAT-AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHhhhHhhhhHHhhHHHH-HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 4444555666666666555 3322111000 011 12234445555666677777777776332221 1233455
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 022531 225 ICILSSYLMLGHLKEVGEII 244 (295)
Q Consensus 225 ~~li~~~~~~~~~~~A~~~~ 244 (295)
..|+.+|- .|+.+++.+++
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 66777763 56776665554
No 307
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.23 E-value=5.5 Score=32.52 Aligned_cols=128 Identities=7% Similarity=0.043 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 022531 9 LSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNE 84 (295)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ 84 (295)
|++.+.-.++.-|...++.+.....=..+ ..+.+.+..++.+.+.....+++..+.... +.|. ....-.
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~ 145 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIF------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHAD 145 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHH------HHHHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHH
Confidence 55555555555555554432222111111 235566667777666655544444433322 1111 233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC------CCCCChHhHHHHHHH--HHccCCHHHHHHHHHHHhhc
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRK------NVVPDIFTYNLWISS--CAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~ 143 (295)
++..+.+.+++..++..++.-... .++|........-.+ |...++++.|+-+|......
T Consensus 146 l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 146 LLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred HHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 666777777777666655432211 122222211111111 45678999999999988854
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.19 E-value=0.5 Score=23.28 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 022531 83 NEMMTLYMSVGQVEKVALVVEEIK 106 (295)
Q Consensus 83 ~~li~~~~~~~~~~~a~~~~~~m~ 106 (295)
..+...+...|++++|++.|++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444444444444444444433
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.78 E-value=3.2 Score=36.22 Aligned_cols=132 Identities=7% Similarity=0.014 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
...-+.+..++.+.|..++|+++- +|..-.. ....+.|+++.|.++-.+.. +..-|..|..+..
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~rF---elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS-------TDPDQRF---ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC-------CChhhhh---hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 345677888888888888888764 2222111 12235677777777664432 4567888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHH
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 170 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (295)
..+++..|.+.|..... |..|+-.+...|+-+....+-....+. | +.|. ...+|...|+++++.
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~-g-~~N~-----AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ-G-KNNL-----AFLAYFLSGDYEECL 741 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh-c-ccch-----HHHHHHHcCCHHHHH
Confidence 88888888888776543 455666666777766555555555554 3 2222 234566678888877
Q ss_pred HHHHH
Q 022531 171 SSTLV 175 (295)
Q Consensus 171 ~~~~~ 175 (295)
+ ++.
T Consensus 742 ~-lLi 745 (794)
T KOG0276|consen 742 E-LLI 745 (794)
T ss_pred H-HHH
Confidence 7 443
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.78 E-value=0.047 Score=38.40 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=25.1
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 103 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 103 (295)
+..+.+.+.+.....+++.+...+-..+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444555555555555544333345555555555555554445444444
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=5.7 Score=34.82 Aligned_cols=150 Identities=12% Similarity=0.085 Sum_probs=94.8
Q ss_pred HhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 022531 22 TKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 101 (295)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 101 (295)
.-.|+++.|..++..+++ ...+.++..+-+.|-.++|+++- +|+..- .....+.|+++.|.++
T Consensus 597 vmrrd~~~a~~vLp~I~k-----~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~l 659 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK-----EIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDL 659 (794)
T ss_pred hhhccccccccccccCch-----hhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHH
Confidence 445777777776655543 34455666666777777776543 232211 2234467888888877
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhc
Q 022531 102 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 181 (295)
Q Consensus 102 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (295)
..+. -+..-|..|.++..+.+++..|.+.|.....- ..|+-.+...|+.+.... +-....+.+
T Consensus 660 a~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~----------~~LlLl~t~~g~~~~l~~-la~~~~~~g 722 (794)
T KOG0276|consen 660 AVEA------NSEVKWRQLGDAALSAGELPLASECFLRARDL----------GSLLLLYTSSGNAEGLAV-LASLAKKQG 722 (794)
T ss_pred HHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcch----------hhhhhhhhhcCChhHHHH-HHHHHHhhc
Confidence 6554 25566888999989999999988888776643 356666777777765555 444444444
Q ss_pred CCCccccHHHHHHHHHhcCCHHHHHHHHHH
Q 022531 182 TQRQWITYDFLIILYAGLGNKDKIDQIWKS 211 (295)
Q Consensus 182 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 211 (295)
.. | .-..+|...|+++++.+++..
T Consensus 723 ~~-N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 723 KN-N-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cc-c-----hHHHHHHHcCCHHHHHHHHHh
Confidence 32 2 223355678888888887753
No 312
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.63 E-value=9.9 Score=34.24 Aligned_cols=86 Identities=9% Similarity=0.099 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 022531 187 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 266 (295)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (295)
.+.+--+.-+...|+..+|.++-.+.+ -|+...|-.=+.+++..+++++-+++-+.. ..+.-|.-.+.+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk-------ksPIGy~PFVe~ 753 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK-------KSPIGYLPFVEA 753 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc-------CCCCCchhHHHH
Confidence 344455555667777777777766554 577777877888888888888755544332 124567788999
Q ss_pred HHccCChHHHHHHHHHH
Q 022531 267 FSDVGLTEKANEFHMLL 283 (295)
Q Consensus 267 ~~~~g~~~~a~~~~~~m 283 (295)
|.+.|+.++|.+++.+.
T Consensus 754 c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHhcccHHHHhhhhhcc
Confidence 99999999999888654
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.51 E-value=6.8 Score=32.13 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=37.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 221 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATS--DFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
..++..+++.+.+.|.++.|...+..+...... .......-.-.......|+..+|...+++..+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666677777777777777777766552210 00222233345556666777777777766665
No 314
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.11 E-value=9.3 Score=32.92 Aligned_cols=164 Identities=11% Similarity=0.046 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
|....-+++..+.....+.-+..+..+|...| -+-..|..++.+|... ..++-..+|+++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55566677788888888888888888888877 3677888899999888 667778888888886553 4444444555
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHhcCchhhHHHHHHHHHHH-hcCCCccccHHHHHHH
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDD------WVKYVNLVNIYITASHLVNAESSTLVEAEK-SITQRQWITYDFLIIL 195 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~ 195 (295)
-|-+ ++.+.+..+|..+..+ +.|- ...|..+.... ..+.|.... +...+.. .+...-.+.+.-+-.-
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~-l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLR-LQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHH-HHHHHHHhhccchHHHHHHHHHHH
Confidence 5554 7778888888887764 2221 12333333311 334555555 3444433 2333334455555566
Q ss_pred HHhcCCHHHHHHHHHHHHhcc
Q 022531 196 YAGLGNKDKIDQIWKSLRMTK 216 (295)
Q Consensus 196 ~~~~g~~~~a~~~~~~m~~~~ 216 (295)
|....++.+|++++..+.+..
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD 235 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc
Confidence 778888999999988776654
No 315
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.04 E-value=5.9 Score=30.56 Aligned_cols=210 Identities=13% Similarity=0.107 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 123 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 123 (295)
...|..-..+|-...++++|...+.+..+- .+-+...|++ .+.++.|.-+.++|.+. .--...|.-....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 445666667777788888888877766532 1122222221 23356666666666653 1122346666777
Q ss_pred HHccCCHHHHHHHHHHHhhc-CCCCCCHH--HHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcC
Q 022531 124 CAATLNIDQVKKFLDEMSCD-SGGSDDWV--KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG 200 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 200 (295)
|...|.++.|-..+++.-+. .++.|+.. .|.--+......++...|.+ + +......+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e-l---------------~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE-L---------------YGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH-H---------------HHHhhhHhhhhH
Confidence 88888887777766653321 13445432 33333344444444444444 2 233334556666
Q ss_pred CHHHHHHHHHHHHhcc----CCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHhhhc--CCCCCHHHHHHHHHHHHccCCh
Q 022531 201 NKDKIDQIWKSLRMTK----QKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSA--TSDFDISACNRLLGAFSDVGLT 273 (295)
Q Consensus 201 ~~~~a~~~~~~m~~~~----~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 273 (295)
.+++|-..+.+-.... -.++. ..|...|-.+.-..++..|.+.++.--.-+ ....+..+...|+.+|- .|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCH
Confidence 6666665554332111 11222 235667777778889999999998754322 11346678888888774 5777
Q ss_pred HHHHHHH
Q 022531 274 EKANEFH 280 (295)
Q Consensus 274 ~~a~~~~ 280 (295)
+.+..++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 7766554
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.00 E-value=6.3 Score=31.62 Aligned_cols=103 Identities=12% Similarity=0.147 Sum_probs=64.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH
Q 022531 74 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN---VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW 150 (295)
Q Consensus 74 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (295)
|.+....+...++..-....+++.++.++-+++... ..|+. +-.++++.|.+. ++++++.++..=..- |+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky-~pq~~i~~l~npIqY-GiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKY-DPQKAIYTLVNPIQY-GIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHcc-ChHHHHHHHhCcchh-ccccch
Confidence 344445555566655556677888888777776541 22332 222234444332 566777777766654 788888
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 022531 151 VKYVNLVNIYITASHLVNAESSTLVEAEK 179 (295)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (295)
.++..+++.+.+.+++.+|..++...|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888888844444433
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.93 E-value=15 Score=35.06 Aligned_cols=217 Identities=10% Similarity=0.040 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHhcc--ChhHHHHHHhhcccC----------------CCCHHHHHHH----------HHHHHccCcHHHH
Q 022531 12 SDYATRIDLMTKVF--GIHSGERYFEGLPLS----------------AKTSETYTAL----------LHLYAGAKWTEKA 63 (295)
Q Consensus 12 ~~~~~li~~~~~~~--~~~~A~~~~~~~~~~----------------~p~~~~~~~l----------i~~~~~~~~~~~a 63 (295)
.-.-.+|.+|.+.+ .+++|+......... .+....|++- +-+-..+.++.+-
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~SqkDPkEy 870 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKSQKDPKEY 870 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHhccChHHH
Confidence 33456888888887 677777766665531 1122334432 3334456777777
Q ss_pred HHHHHHHHhC-----CCCCCH--HHHHHHHHHHHhcC--CHHHHHHHHHHHH--hCC---CCCChHhHHHHHHHH----H
Q 022531 64 EELFERVKQS-----NLSFNA--LMYNEMMTLYMSVG--QVEKVALVVEEIK--RKN---VVPDIFTYNLWISSC----A 125 (295)
Q Consensus 64 ~~~~~~m~~~-----~~~p~~--~~~~~li~~~~~~~--~~~~a~~~~~~m~--~~~---~~p~~~~~~~li~~~----~ 125 (295)
+-+++++++. .++.|. .-|...+......| -++++..+.++=. ..+ ..|+...+..+..+| .
T Consensus 871 LP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~ 950 (1265)
T KOG1920|consen 871 LPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLR 950 (1265)
T ss_pred HHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHH
Confidence 7777777632 111121 23445555555555 4555555543311 011 356666655555443 4
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHH
Q 022531 126 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI 205 (295)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 205 (295)
....+++|.-.|+..-+. ...+.+|..+|+|++|.. +..++...... -..+--.|+.-+...++.-+|
T Consensus 951 ~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~-~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 951 EELMSDEAALMYERCGKL----------EKALKAYKECGDWREALS-LAAQLSEGKDE-LVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHH-HHHhhcCCHHH-HHHHHHHHHHHHHHcccchhH
Confidence 556677776666554331 245678888888888888 55444221111 111224566677778888888
Q ss_pred HHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 206 DQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 206 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
-++..+-.. . ....+..|++...+++|.++-....
T Consensus 1019 a~il~e~~s---d-----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1019 AKILLEYLS---D-----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhc---C-----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 777765443 2 2235667778888999988876544
No 318
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.61 E-value=7.3 Score=30.89 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=25.5
Q ss_pred HHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022531 52 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105 (295)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 105 (295)
+.|..+|.+.+|.++.++....+ +.+...|-.|+..+...|+--.|.+-++.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34444555555555555544443 334444445555555555544444444443
No 319
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.40 E-value=6.6 Score=30.07 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=15.6
Q ss_pred HHhcCchhhHHHHHHHHHHHhcCCCccccH
Q 022531 160 YITASHLVNAESSTLVEAEKSITQRQWITY 189 (295)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (295)
-+..+++..|.+ +|+++.......+..-|
T Consensus 164 aa~leqY~~Ai~-iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 164 AAQLEQYSKAID-IYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhccchHHHh
Confidence 345566666666 66665554444343333
No 320
>PRK09687 putative lyase; Provisional
Probab=90.40 E-value=7.8 Score=30.87 Aligned_cols=236 Identities=8% Similarity=-0.089 Sum_probs=153.6
Q ss_pred CCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcH----HHHHHHHHHHHhCCCCCCHHHHH
Q 022531 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT----EKAEELFERVKQSNLSFNALMYN 83 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~~~~ 83 (295)
.+|.......+..+...|..+-...+.. +.. .+|...-...+.+++..|+. .++...+..+...+ |+..+-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~-ll~-~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIE-LCS-SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHH-HHh-CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHHH
Confidence 4566677778888888886444444443 332 36777777778888888763 56888888775543 5677776
Q ss_pred HHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 022531 84 EMMTLYMSVGQ-----VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 158 (295)
Q Consensus 84 ~li~~~~~~~~-----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (295)
..+.++...+. ...+...+...... ++..+-...+.++++.++ +.+...+..+... ++..+-...+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHHH
Confidence 77777666542 13344444444443 466777778888888887 4577777777753 45566667777
Q ss_pred HHHhcC-chhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCCh
Q 022531 159 IYITAS-HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 237 (295)
Q Consensus 159 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 237 (295)
++++.+ +...+.. .+..+. ..++..+-..-+.++++.|+. .++..+-...+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~-~L~~~L---~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 182 ALNSNKYDNPDIRE-AFVAML---QDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHhcCCCCCHHHHH-HHHHHh---cCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 777763 2335555 343333 445667777888888999885 4555555554432 2 234688899999996
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHc
Q 022531 238 KEVGEIIDQWKQSATSDFDISACNRLLGAFSD 269 (295)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (295)
+|...+..+.... ||..+-...+.+|.+
T Consensus 252 -~a~p~L~~l~~~~---~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -TLLPVLDTLLYKF---DDNEIITKAIDKLKR 279 (280)
T ss_pred -hHHHHHHHHHhhC---CChhHHHHHHHHHhc
Confidence 6888888887643 577776667776654
No 321
>PHA02875 ankyrin repeat protein; Provisional
Probab=90.23 E-value=8.5 Score=32.56 Aligned_cols=80 Identities=8% Similarity=-0.066 Sum_probs=37.8
Q ss_pred HHHHHhccChhHHHHHHhhcccC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC
Q 022531 18 IDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL--MYNEMMTLYMSVGQ 94 (295)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~ 94 (295)
+...++.|+.+-+..+++.-... ..+.. ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+
T Consensus 6 L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~-g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 6 LCDAILFGELDIARRLLDIGINPNFEIYD-GISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHHHhCCHHHHHHHHHCCCCCCccCCC-CCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34445667777777766542211 11212 2333444455666543 33334455444322 12234455556677
Q ss_pred HHHHHHHH
Q 022531 95 VEKVALVV 102 (295)
Q Consensus 95 ~~~a~~~~ 102 (295)
.+.+..++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 66554444
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.01 E-value=5.2 Score=28.20 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=39.1
Q ss_pred HHHHHHHHHHH---HhcCchhhHHHHHHHHHHHhcCC-CccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 022531 150 WVKYVNLVNIY---ITASHLVNAESSTLVEAEKSITQ-RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 216 (295)
Q Consensus 150 ~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 216 (295)
..+.+.|++.. ...++.+++.. ++..+.--.++ +...++... .+...|++++|.++|+++.+.+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~-lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQA-MLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 33444444433 35778888888 77766544333 123333333 3577888999999998887764
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.88 E-value=1 Score=22.15 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=21.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 259 ACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777788888888888888888765
No 324
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.16 E-value=0.8 Score=24.64 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=17.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcC
Q 022531 263 LLGAFSDVGLTEKANEFHMLLLQKN 287 (295)
Q Consensus 263 l~~~~~~~g~~~~a~~~~~~m~~~g 287 (295)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777777777777777776543
No 325
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.98 E-value=9.8 Score=29.99 Aligned_cols=87 Identities=8% Similarity=0.011 Sum_probs=60.6
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc----
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA---- 126 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 126 (295)
|.+++..++|.+++...-+--+.--+..+.+...-|-.|.+.+++..+.++-....+..-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6788889999998887665543322233456666777788999998888888877765322334457777666554
Q ss_pred -cCCHHHHHHHH
Q 022531 127 -TLNIDQVKKFL 137 (295)
Q Consensus 127 -~~~~~~a~~~~ 137 (295)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 58888888876
No 326
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.55 E-value=1.6 Score=26.84 Aligned_cols=47 Identities=13% Similarity=0.042 Sum_probs=26.0
Q ss_pred hcCChHHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHHccCChHHHHHH
Q 022531 233 MLGHLKEVGEIIDQWKQSATSDFD-ISACNRLLGAFSDVGLTEKANEF 279 (295)
Q Consensus 233 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 279 (295)
..++.+.|+..|....+.....|+ ..++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666554332222 12455566666666666666554
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.26 E-value=1.9 Score=21.17 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 022531 82 YNEMMTLYMSVGQVEKVALVVEEIK 106 (295)
Q Consensus 82 ~~~li~~~~~~~~~~~a~~~~~~m~ 106 (295)
|..+...|...|++++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444445555555555555555443
No 328
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=87.90 E-value=5.8 Score=26.10 Aligned_cols=85 Identities=9% Similarity=0.009 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHH
Q 022531 129 NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQI 208 (295)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 208 (295)
..++|..+.+.+... +. ....+--.-+..+.+.|++++|.. .-.....||...|-+|.. .+.|-.+++...
T Consensus 21 cH~EA~tIa~wL~~~-~~-~~E~v~lIr~~sLmNrG~Yq~ALl-----~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 21 CHQEANTIADWLEQE-GE-MEEVVALIRLSSLMNRGDYQEALL-----LPQCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp -HHHHHHHHHHHHHT-TT-THHHHHHHHHHHHHHTT-HHHHHH-----HHTTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHhhHHHHHHHH-----hcccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 457777777777765 22 222333334455667777777755 334455667776655543 567777777777
Q ss_pred HHHHHhccCCCCHHh
Q 022531 209 WKSLRMTKQKMTSRN 223 (295)
Q Consensus 209 ~~~m~~~~~~~~~~~ 223 (295)
+.++..+| .|....
T Consensus 92 l~rla~~g-~~~~q~ 105 (116)
T PF09477_consen 92 LTRLASSG-SPELQA 105 (116)
T ss_dssp HHHHCT-S-SHHHHH
T ss_pred HHHHHhCC-CHHHHH
Confidence 77776655 343333
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.77 E-value=0.99 Score=20.92 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=4.0
Q ss_pred HHccCcHHHHH
Q 022531 54 YAGAKWTEKAE 64 (295)
Q Consensus 54 ~~~~~~~~~a~ 64 (295)
+...|++++|.
T Consensus 11 ~~~~G~~~eA~ 21 (26)
T PF07721_consen 11 LLAQGDPDEAE 21 (26)
T ss_pred HHHcCCHHHHH
Confidence 33333333333
No 330
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.77 E-value=23 Score=32.79 Aligned_cols=199 Identities=13% Similarity=0.018 Sum_probs=101.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh----H---hHHHHHHH-HHccCCHHHHHHHHHHHhhcC---CCCCCHHHHHHHHH
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDI----F---TYNLWISS-CAATLNIDQVKKFLDEMSCDS---GGSDDWVKYVNLVN 158 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~----~---~~~~li~~-~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~ 158 (295)
.-..++.+|..++.++...-..|+. . .|+.+-.. ....|+++++.++-+.....- -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4457788888888877553222221 1 23333222 235678888888877765531 22344556667777
Q ss_pred HHHhcCchhhHHHHHHHHHHHhcCCCccccH---HHHHH--HHHhcCC--HHHHHHHHHHHHhcc--C----CCCHHhHH
Q 022531 159 IYITASHLVNAESSTLVEAEKSITQRQWITY---DFLII--LYAGLGN--KDKIDQIWKSLRMTK--Q----KMTSRNYI 225 (295)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~li~--~~~~~g~--~~~a~~~~~~m~~~~--~----~~~~~~~~ 225 (295)
+..-.|++++|.. +.....+.-..-+...+ ..+.. .+...|+ ..+.+..|....... - .+-..+..
T Consensus 506 a~~~~G~~~~Al~-~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALA-LMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHH-HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7888899999888 65555443333343332 22222 2344563 223333333332221 0 12223444
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHhhhcCCCCCHHHH--HHHHHHHHccCChHHHHHHHHHHHhcCCCC
Q 022531 226 CILSSYLMLG-HLKEVGEIIDQWKQSATSDFDISAC--NRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290 (295)
Q Consensus 226 ~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 290 (295)
.+..++.+.. ...++..-+.--.... ..|-.... ..|+.+....|+.++|...++++......+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 5555555521 1122222222222211 12222222 256777788899999998888886644433
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.52 E-value=1.3 Score=21.54 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=13.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhh
Q 022531 227 ILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
+..++.+.|+.++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555556666666666655553
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.37 E-value=7.2 Score=33.25 Aligned_cols=119 Identities=8% Similarity=-0.028 Sum_probs=64.7
Q ss_pred ccCcHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHH
Q 022531 56 GAKWTEKAE-ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK 134 (295)
Q Consensus 56 ~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 134 (295)
..|++..|- ++|.-+....--|+..... .......|+++.+.+.+...... +-....+..++++...+.|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 456655443 3444444332233333322 33345567777777777655432 3345567777777777778888877
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Q 022531 135 KFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 180 (295)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (295)
.+-.-|... . ..++.+........-..|-+|++.. .+.+++.-
T Consensus 378 s~a~~~l~~-e-ie~~ei~~iaa~sa~~l~~~d~~~~-~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLSN-E-IEDEEVLTVAAGSADALQLFDKSYH-YWKRVLLL 420 (831)
T ss_pred HHHHHHhcc-c-cCChhheeeecccHHHHhHHHHHHH-HHHHHhcc
Confidence 777766653 2 2233333333333344556667766 66665543
No 333
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.35 E-value=18 Score=31.06 Aligned_cols=119 Identities=9% Similarity=-0.048 Sum_probs=75.6
Q ss_pred hcCCHHHH-HHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhH
Q 022531 91 SVGQVEKV-ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169 (295)
Q Consensus 91 ~~~~~~~a-~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (295)
..|++-.| .+++..+....-.|+.....+. .+...|+++.+...+...... +.....+..+++...-+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence 34555444 3455555554444554443333 456789999999988877652 345566778889999999999999
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 170 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
.. ..+.|...... +......-....-..|-++++...|+++...
T Consensus 377 ~s-~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LS-TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HH-HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 99 77766654443 2222222222234567889999999887654
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.96 E-value=2 Score=23.13 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=8.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 022531 87 TLYMSVGQVEKVALVVEEIK 106 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~ 106 (295)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444443
No 335
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=86.88 E-value=7.1 Score=26.60 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 98 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 98 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
..+-++.+..-.+.|++......+++|-+.+|+..|..+|+.++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555556666666666666666666666666666666553
No 336
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=86.66 E-value=6.8 Score=26.70 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 62 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 62 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
+..+-++.+...++.|++.+...-++++-+.+++..|.++|+-.+.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34555666667778888888888888888888888888888777654
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.66 E-value=6.3 Score=32.00 Aligned_cols=92 Identities=14% Similarity=0.015 Sum_probs=57.0
Q ss_pred HHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 022531 19 DLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK 97 (295)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 97 (295)
+-|.+.|.+++|++.|..-....| |.+++..-..+|.+..++..|..=.+.....+ ..-.-.|..-+.+-...|...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 456788889999999988777767 88888888888888888887776666655543 0011223333333333344444
Q ss_pred HHHHHHHHHhCCCCCC
Q 022531 98 VALVVEEIKRKNVVPD 113 (295)
Q Consensus 98 a~~~~~~m~~~~~~p~ 113 (295)
|.+=++..++ +.|+
T Consensus 184 AKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 184 AKKDCETVLA--LEPK 197 (536)
T ss_pred HHHhHHHHHh--hCcc
Confidence 4444444444 3454
No 338
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=86.24 E-value=15 Score=29.05 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 022531 83 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 162 (295)
Q Consensus 83 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (295)
..=|.+++..++|.+++...-+--+.--+........-|-.|.+.+.+..+.++-..-.+..+. -+..-|..+++.|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~N-q~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSN-QSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCccc-CCchhhHHHHHHHHH
Confidence 3457788899999998887766555433333445555666788999999888887776554222 233347777666654
Q ss_pred -----cCchhhHHH
Q 022531 163 -----ASHLVNAES 171 (295)
Q Consensus 163 -----~~~~~~a~~ 171 (295)
.|.+++|++
T Consensus 166 ~VLlPLG~~~eAee 179 (309)
T PF07163_consen 166 HVLLPLGHFSEAEE 179 (309)
T ss_pred HHHhccccHHHHHH
Confidence 689999998
No 339
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.19 E-value=10 Score=28.36 Aligned_cols=91 Identities=7% Similarity=-0.036 Sum_probs=60.2
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFN-----ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 125 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 125 (295)
..-+.+.|++++|..-|.+.+..- ++. ...|..-..++.+.+.++.|+.-..+..+.+.. ......--..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 334456788888888888877652 332 234555556778888888888888777775322 2222333344677
Q ss_pred ccCCHHHHHHHHHHHhhc
Q 022531 126 ATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~ 143 (295)
+..++++|+.=|+++...
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 888888888888888874
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.09 E-value=11 Score=27.54 Aligned_cols=29 Identities=3% Similarity=0.171 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 022531 130 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 161 (295)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (295)
+++|...|++.... .|+..+|+.-+.+..
T Consensus 96 F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 96 FEKATEYFQKAVDE---DPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CCCcHHHHHHHHHHH
Confidence 44455555555543 466666666666553
No 341
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.06 E-value=7.3 Score=25.35 Aligned_cols=85 Identities=9% Similarity=0.049 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHH
Q 022531 130 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 209 (295)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 209 (295)
.++|..+-+.+... +.. ...+--.-+..+...|++++|.. +....+.||...|-+|.. .+.|-.+++..-+
T Consensus 21 HqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~-----l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 21 HQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQ-----LGNKLCYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHH-----hcCCCCCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 45666666655543 211 22222233345666777777777 333445677777766644 4566666666666
Q ss_pred HHHHhccCCCCHHhH
Q 022531 210 KSLRMTKQKMTSRNY 224 (295)
Q Consensus 210 ~~m~~~~~~~~~~~~ 224 (295)
.+|..+| .|....|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 6666665 4444444
No 342
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.70 E-value=27 Score=31.53 Aligned_cols=65 Identities=9% Similarity=0.037 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhccChhHHHHHHhhcccC-CCCHHHHHHHHHHHHccCc-------HHHHHHHHHHHHhC
Q 022531 9 LSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKW-------TEKAEELFERVKQS 73 (295)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~ 73 (295)
++......+|-.|.|+|++++|.++....... ......+-..+..|....+ -+....-|++....
T Consensus 109 ~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 109 VNGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp ETTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 35556778899999999999999999555554 2455667777777766422 23455556655544
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.88 E-value=17 Score=28.59 Aligned_cols=188 Identities=12% Similarity=0.027 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCC---hHhHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHHHhcCc
Q 022531 93 GQVEKVALVVEEIKRKNVVPD---IFTYNLWISSCAATLNIDQVKKFLDEMSCD----SGGSDDWVKYVNLVNIYITASH 165 (295)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ 165 (295)
.++++|+.-|++..+...... ..+...++....+.+++++....|.++..- .--.-+....|+++.......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666665554321111 223334555666666666666666655431 0011234455666665555555
Q ss_pred hhhHHHHHHHHHHHhcC-CCcc----ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-----------CCHHhHHHHHH
Q 022531 166 LVNAESSTLVEAEKSIT-QRQW----ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-----------MTSRNYICILS 229 (295)
Q Consensus 166 ~~~a~~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------~~~~~~~~li~ 229 (295)
.+--.+ +++...+... ..|. .|-+.|...|...+.+.+...+++++..+-.. .-...|..=|+
T Consensus 121 m~LLQ~-FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 121 MDLLQE-FYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hHHHHH-HHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 554444 4443332111 1122 22245666677777777777777777543111 11234666677
Q ss_pred HHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH-----HccCChHHHH-HHHHH
Q 022531 230 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF-----SDVGLTEKAN-EFHML 282 (295)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~-~~~~~ 282 (295)
.|....+-..-..++++...-...-|.+.... +|+-| .+.|++++|. ++|+.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 78777777777777777654332234444333 33333 3567777766 34433
No 344
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.66 E-value=15 Score=27.87 Aligned_cols=183 Identities=14% Similarity=0.036 Sum_probs=107.6
Q ss_pred HHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 022531 21 MTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 99 (295)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 99 (295)
|-..|-..-|+-=|.+.....| -+.+||-|.-.+...|+++.|.+.|+...+.+- ....++-.-.-++.--|+++-|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhhH
Confidence 3444556666666666655556 467999999999999999999999999998862 22223222222344568899998
Q ss_pred HHHHHHHhCCC-CCChHhHHHHHHHHHccCCHHHHHHHHHH-HhhcCCCCCCHHHHHH-HHHHHHhcCchhhHHHHHHHH
Q 022531 100 LVVEEIKRKNV-VPDIFTYNLWISSCAATLNIDQVKKFLDE-MSCDSGGSDDWVKYVN-LVNIYITASHLVNAESSTLVE 176 (295)
Q Consensus 100 ~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~ 176 (295)
+=|.+.-+... .|--..|--+. -+.-++.+|..-+.+ .... +..-|.. ++..|...-..+.+ +++
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~-----d~e~WG~~iV~~yLgkiS~e~l----~~~ 221 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS-----DKEQWGWNIVEFYLGKISEETL----MER 221 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc-----cHhhhhHHHHHHHHhhccHHHH----HHH
Confidence 88877766532 22222333333 233467777654443 3332 2222222 22333222222222 222
Q ss_pred HHHhcC------CCccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 022531 177 AEKSIT------QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 216 (295)
Q Consensus 177 ~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 216 (295)
+...-. ..-..||--|..-+...|+.++|..+|+-....+
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 221111 1123678889999999999999999999876653
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.42 E-value=9 Score=24.96 Aligned_cols=88 Identities=9% Similarity=0.017 Sum_probs=59.4
Q ss_pred cChhHHHHHHhhcccCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022531 25 FGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 103 (295)
Q Consensus 25 ~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 103 (295)
..-++|..+-+.+...+.. ..+--+-+..+...|++++|+.+.+.+ ..||...|-+|.. .+.|-.++...-+.
T Consensus 19 HcHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 3467888887777665322 223333355778899999999988776 3688888877655 46677777777787
Q ss_pred HHHhCCCCCChHhHHH
Q 022531 104 EIKRKNVVPDIFTYNL 119 (295)
Q Consensus 104 ~m~~~~~~p~~~~~~~ 119 (295)
+|..+|- |....|..
T Consensus 93 rla~sg~-p~lq~Faa 107 (115)
T TIGR02508 93 RLAASGD-PRLQTFVA 107 (115)
T ss_pred HHHhCCC-HHHHHHHH
Confidence 8877753 45555543
No 346
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.39 E-value=6.6 Score=29.17 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=24.4
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 217 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 217 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
..|++.+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367777777777777777777777777777766
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.36 E-value=29 Score=30.84 Aligned_cols=178 Identities=10% Similarity=-0.066 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHh-------CCCCCChHhHHHHHHHHHcc
Q 022531 60 TEKAEELFERVKQSNLSFNALMYNEMMTLY-----MSVGQVEKVALVVEEIKR-------KNVVPDIFTYNLWISSCAAT 127 (295)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-----~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~ 127 (295)
...|...++...+.| +...-..+..+| ....+++.|+.+|+...+ .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456778888777776 344443333333 345678888888887766 44 233455566666653
Q ss_pred C-----CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-cCchhhHHHHHHHHHHHhcCCCccccHHHHHHHH--Hhc
Q 022531 128 L-----NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT-ASHLVNAESSTLVEAEKSITQRQWITYDFLIILY--AGL 199 (295)
Q Consensus 128 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~ 199 (295)
. +.+.|..++...-.. | .|+....-..+..... ..+...|.+ ++......|.. ...-+..++... ...
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~~g~~~~d~~~A~~-yy~~Aa~~G~~-~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYETGTKERDYRRAFE-YYSLAAKAGHI-LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHHcCCccccHHHHHH-HHHHHHHcCCh-HHHHHHHHHHHhCCCcC
Confidence 3 566688888777765 3 2344332222222222 234667777 77777666643 222222221111 123
Q ss_pred CCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 200 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 200 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
.+...|..++++..+.| .|...--...+..+.. ++.+.+.-.+..+..
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 46777888888777776 3332221223333333 555555555544444
No 348
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.26 E-value=12 Score=26.32 Aligned_cols=82 Identities=9% Similarity=0.043 Sum_probs=50.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChHhHHH
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSN-----LSFNALMYNEMMTLYMSVGQ-VEKVALVVEEIKRKNVVPDIFTYNL 119 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ 119 (295)
..|.++.-.+..+++...+.+++.+.... -..+...|+.++.+.++... ---+..+|.-|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 45666666666777777777777663221 01244556777777655554 3445666666666666667777777
Q ss_pred HHHHHHcc
Q 022531 120 WISSCAAT 127 (295)
Q Consensus 120 li~~~~~~ 127 (295)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77666554
No 349
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.25 E-value=57 Score=34.10 Aligned_cols=62 Identities=18% Similarity=0.072 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 022531 223 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 288 (295)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 288 (295)
+|....+.....|+++.|...+-...+.. .|.. +---.....+.|+...|+.++++.++...
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i--~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESR--LPEI--VLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchH--HHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 35555566666788887777666555533 2333 44566677888888888888888876443
No 350
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.73 E-value=5.4 Score=32.38 Aligned_cols=55 Identities=9% Similarity=-0.036 Sum_probs=39.2
Q ss_pred HHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 158 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 214 (295)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 214 (295)
+-|.+.|.+++|.+ .+.......+ -|.+++..-..+|.+..++..|+.=......
T Consensus 105 N~yFKQgKy~EAID-CYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAID-CYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHH-HhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56888899999999 6665444332 2778888888889888888877765554443
No 351
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.70 E-value=8.4 Score=30.03 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh----hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 224 YICILSSYLMLGHLKEVGEIIDQWKQ----SATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
...+..-|.+.|++++|.++|+.+.. .+...+...+...+..++...|+.+....+-=++.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 33577888999999999999998743 33334455667778888889999988887766654
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.46 E-value=18 Score=27.59 Aligned_cols=77 Identities=13% Similarity=0.005 Sum_probs=57.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChHhHHHHHHH
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN--VVPDIFTYNLWISS 123 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~ 123 (295)
|.+.-++.+.+.+.+++++...++-.+.. +-|...-..++..++-.|+|++|..-++-.-+.. ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556677888899999999998877764 4567778899999999999999988887665532 23345667777765
No 353
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=82.79 E-value=14 Score=29.98 Aligned_cols=81 Identities=10% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccC-----CCCHHHHHHH--HHHHHccCcHHHHHHHHHHHHh-----CCCCCCH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLS-----AKTSETYTAL--LHLYAGAKWTEKAEELFERVKQ-----SNLSFNA 79 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~ 79 (295)
.....++.+.-+.++.++|.++++++.+. .|+...|... .+.+...|+..++.+++++.++ .+++|++
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred H-HHHHHHHHHHhc
Q 022531 80 L-MYNEMMTLYMSV 92 (295)
Q Consensus 80 ~-~~~~li~~~~~~ 92 (295)
+ .|+.+-.-|.+.
T Consensus 156 h~~fY~lssqYyk~ 169 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKK 169 (380)
T ss_pred hhhHHHHHHHHHHH
No 354
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.56 E-value=37 Score=30.67 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=40.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCC
Q 022531 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ-------VEKVALVVEEIKRKNV 110 (295)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~~~ 110 (295)
-=.+|-.|.|+|++++|.++..+.... +......+-..+..|....+ -++...-|++..+...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 345788889999999999999655543 34445667777777776532 2355666666665543
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.53 E-value=6.2 Score=24.34 Aligned_cols=45 Identities=4% Similarity=-0.082 Sum_probs=20.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHccCCHHHHHH
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPD--IFTYNLWISSCAATLNIDQVKK 135 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~ 135 (295)
...+.++|+..|....+.-..|. -.++..++.+++..|+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444322211 1234444555555555555444
No 356
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=82.49 E-value=6.2 Score=23.06 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=11.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHh
Q 022531 226 CILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 226 ~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
.+|.+|...|++++|.+++.++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555443
No 357
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.87 E-value=12 Score=27.38 Aligned_cols=107 Identities=14% Similarity=0.037 Sum_probs=55.8
Q ss_pred hhHHHHHHhhcccCCC-CHHHHHHHHH---HHHccCcHHHH-------HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-
Q 022531 27 IHSGERYFEGLPLSAK-TSETYTALLH---LYAGAKWTEKA-------EELFERVKQSNLSFN-ALMYNEMMTLYMSVG- 93 (295)
Q Consensus 27 ~~~A~~~~~~~~~~~p-~~~~~~~li~---~~~~~~~~~~a-------~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~- 93 (295)
++.|.+..+.--...| |...++.-.. -++......++ ..-|++.+.. .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHh
Confidence 4445555554333344 5554444333 33333333444 4444444443 355 457777777766443
Q ss_pred ---C-------HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 94 ---Q-------VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 94 ---~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
+ +++|...|++..+ ..|+..+|..-+.... +|-+++.++.+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 2 4556666666665 4799999998888764 355566666554
No 358
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.85 E-value=15 Score=25.55 Aligned_cols=67 Identities=9% Similarity=-0.054 Sum_probs=36.9
Q ss_pred ccccHHHHHHHHHhcC---CHHHHHHHHHHHHhccCCCCHHhH-HHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 185 QWITYDFLIILYAGLG---NKDKIDQIWKSLRMTKQKMTSRNY-ICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 185 ~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
+..+--.+..++.+.. +..+.+.+++.+.+...+-...-| --|.-++.+.++++.++++++.+.+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 3333334444555544 345556677776653222222222 235556777888888888887777643
No 359
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.64 E-value=27 Score=30.90 Aligned_cols=147 Identities=13% Similarity=0.041 Sum_probs=82.4
Q ss_pred CChHhHHHHHHHHHccC--CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccH
Q 022531 112 PDIFTYNLWISSCAATL--NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY 189 (295)
Q Consensus 112 p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (295)
|+..+..+++.-....- ..+-|-.++-.|.+ ..-|-+.+.|...-...-.|+...|.. .+...+...+...-+..
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~-cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIA-CLQRALNLAPLQQDVPL 645 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHH-HHHHHhccChhhhcccH
Confidence 45555555544333221 12334444444443 334544444433333334577777777 55555554444344555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 022531 190 DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLL 264 (295)
Q Consensus 190 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 264 (295)
-.|.....+.|...+|-.++.+..... ...+-++..+.+++....+++.|++.|++..+... .+...-+.|.
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~--~~~~~~~~l~ 717 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT--KCPECENSLK 717 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC--CChhhHHHHH
Confidence 556666667777777777776655543 33344566777888888888888888887776542 3444444444
No 360
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.00 E-value=32 Score=28.86 Aligned_cols=166 Identities=10% Similarity=-0.003 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCC
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK---------NVVPD 113 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~p~ 113 (295)
..+.-+..-|..+|+++.|++.+.+....- .+-....|-.+|..-.-.|+|.....+..+..+. .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456778888889999999999998865432 1112345556666667778888777776666553 13333
Q ss_pred hHhHHHHHHHHHccCCHHHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCcccc
Q 022531 114 IFTYNLWISSCAATLNIDQVKKFLDEMSCDS-----GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT 188 (295)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (295)
...+..+...+. +++..|.+.|-...... -+.|+-.+....+.+++--++-+--..+.-...++......+..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 444444444443 36666666554433221 12333333334445554444443332311111122222223334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 189 YDFLIILYAGLGNKDKIDQIWKSLRM 214 (295)
Q Consensus 189 ~~~li~~~~~~g~~~~a~~~~~~m~~ 214 (295)
+..+...| .+++..+++++++++.
T Consensus 309 r~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 44444433 4677888888887654
No 361
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.80 E-value=36 Score=29.41 Aligned_cols=244 Identities=10% Similarity=0.066 Sum_probs=139.7
Q ss_pred HHHHHhhcccCCCCHHHHHHHHHHHHccC------cHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH-HHHHH
Q 022531 30 GERYFEGLPLSAKTSETYTALLHLYAGAK------WTEKAEELFERVKQS-NLSFN-ALMYNEMMTLYMSVGQV-EKVAL 100 (295)
Q Consensus 30 A~~~~~~~~~~~p~~~~~~~li~~~~~~~------~~~~a~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~~~~-~~a~~ 100 (295)
...+|+....--|+...|+..|..|...- .+.....+|+..... +..++ ...|..+.-.+...... +-|..
T Consensus 301 ~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 301 CCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 34566666554467777777777665432 345555566655433 23333 34555555555555543 33444
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHcc-CCHHHH-HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Q 022531 101 VVEEIKRKNVVPDIFTYNLWISSCAAT-LNIDQV-KKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE 178 (295)
Q Consensus 101 ~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (295)
+..+.. .-+...|..-+....+. .+++-- ..++...... -..+....|++.. +....+.....++-...
T Consensus 381 l~~e~f----~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~-~~s~~~~~w~s~~----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 381 LTTELF----RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQ-VCSELLISWASAS----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred hhHHHh----cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-hcchhHHHHHHHh----hccchhHHHHHHHHHHH
Confidence 443333 33555555544444422 122221 1223333332 2233333444333 22223333322333344
Q ss_pred HhcCCCccccH-HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHH--hcCChHHHHHHHHHHhhhcCCCC
Q 022531 179 KSITQRQWITY-DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL--MLGHLKEVGEIIDQWKQSATSDF 255 (295)
Q Consensus 179 ~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~~~~~~~~~~ 255 (295)
.+...++..++ +.++..+-..|-..+|...+..+.... +|+...|..+|+.=. ..-++..+.++|+.+....+ .
T Consensus 452 ~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~ 528 (568)
T KOG2396|consen 452 LSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--A 528 (568)
T ss_pred HHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--C
Confidence 45555666665 567888888999999999999998763 556666666665422 22237788999999988765 5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 256 DISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
|+..|...+.-=...|..+.+-.++.++.+
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 778888888777789999998888777654
No 362
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.26 E-value=3 Score=19.27 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=15.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHh
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQ 72 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 72 (295)
.|..+...+...++++.|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 445555566666666666666665554
No 363
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=79.98 E-value=6.4 Score=23.00 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 237 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
++...++++.+.... -|..-.-.+|.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~R---HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQR---HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445555444321 2444445567777777777777777776643
No 364
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=78.95 E-value=14 Score=26.09 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=29.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 67 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 67 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
.+.+++.|++++.. -..++..+.+.+++-.|..+|+++.+.+...+..|-.-.++.+...|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34445555544432 23444555555555666666666666554444444333344444444
No 365
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.85 E-value=18 Score=28.15 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----hCC-CCCChHhHHHHHHHHHccCCHHHHHHHHHHH
Q 022531 83 NEMMTLYMSVGQVEKVALVVEEIK----RKN-VVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140 (295)
Q Consensus 83 ~~li~~~~~~~~~~~a~~~~~~m~----~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 140 (295)
-.+..-|.+.|++++|.++|+.+. +.| ..+...+...+..++.+.|+.+....+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 355666777777777777777663 233 2334455666677777777777766654443
No 366
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.45 E-value=26 Score=26.35 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=45.6
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCH-----HHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHH-H---H
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDW-----VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF-L---I 193 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l---i 193 (295)
-+.+.|++++|..-|...... +++.. ..|..-..++.+.+.++.|.. --.....-++ ||.. | .
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~-dcsKaiel~p-----ty~kAl~RRA 175 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIE-DCSKAIELNP-----TYEKALERRA 175 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHH-HHHhhHhcCc-----hhHHHHHHHH
Confidence 356677777777777777663 33322 233444455666666666666 3333322221 2222 1 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 022531 194 ILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
.+|.+...+++|++=|+.+.+.
T Consensus 176 eayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 3555666666666666666654
No 367
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.26 E-value=19 Score=24.67 Aligned_cols=45 Identities=16% Similarity=-0.000 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 022531 239 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 283 (295)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 283 (295)
.+.++|..|..+++...-...|..-...+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 777888888877766666777777777888888888888887653
No 368
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=78.19 E-value=35 Score=27.66 Aligned_cols=144 Identities=9% Similarity=-0.008 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHH
Q 022531 130 IDQVKKFLDEMSCDSGG---SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 206 (295)
Q Consensus 130 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 206 (295)
.+.|.+.|+........ ..++.....++....+.|..+.-.. ++... ... ++......++.+.+...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~-l~~~~-~~~--~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDF-LWELY-KNS--TSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHH-HHHHH-HTT--STHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHH-HHHHH-hcc--CCHHHHHHHHHhhhccCCHHHHH
Confidence 45677777776663122 3455555666677777776554333 33332 222 24455667777777788888888
Q ss_pred HHHHHHHhcc-CCCCHHhHHHHHHHHHhcCCh--HHHHHHHHH----HhhhcCCCCCHHHHHHHHHHHHc----cCChHH
Q 022531 207 QIWKSLRMTK-QKMTSRNYICILSSYLMLGHL--KEVGEIIDQ----WKQSATSDFDISACNRLLGAFSD----VGLTEK 275 (295)
Q Consensus 207 ~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~--~~A~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 275 (295)
++++.+...+ +++.. ...++.++...+.. +.+++++.. +.+.. .++......++..+.. ..+.++
T Consensus 222 ~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~--~~~~~~~~~~~~~~~~~~~t~~~~~~ 297 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKF--GTNSSALSRVIKSFAGNFSTEEQLDE 297 (324)
T ss_dssp HHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC---TTSHCCHHHHHCCCTT--SHHHHHH
T ss_pred HHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHhccCCCHHHHHH
Confidence 8888777754 44333 33455555433433 666666543 33322 2222244555554333 334444
Q ss_pred HHHHHH
Q 022531 276 ANEFHM 281 (295)
Q Consensus 276 a~~~~~ 281 (295)
..++|+
T Consensus 298 ~~~f~~ 303 (324)
T PF11838_consen 298 LEEFFE 303 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 369
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=78.10 E-value=51 Score=29.50 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 022531 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 121 (295)
Q Consensus 42 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 121 (295)
+....+..|++.+. .-+.+.-.++++++.. . + ...+..++++....|-.....-+.+.+....+. +...-..+.
T Consensus 308 ~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHH
Confidence 45566777777764 4455777777777754 2 1 567888888888888777666666666555443 333333333
Q ss_pred HHHHccC-CHHHHHHHHHHHhhcCCCCCC-------HHHHHHHHHHHHhcCch------hhHHHHHHHHHHHhc-CCCcc
Q 022531 122 SSCAATL-NIDQVKKFLDEMSCDSGGSDD-------WVKYVNLVNIYITASHL------VNAESSTLVEAEKSI-TQRQW 186 (295)
Q Consensus 122 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~-~~~~~ 186 (295)
.+..... --.+.++.+.++.+....++. ..++.+++.-+|..... ++... .+....... ...+.
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~ 460 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLK-YLHELLQQAVSKGDE 460 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHH-HHHHHHHHHHhcCCc
Confidence 3333321 223344444444433234444 34567777766655432 33333 333222221 12222
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhc--CChHHHHHHHHHHhh
Q 022531 187 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML--GHLKEVGEIIDQWKQ 249 (295)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~ 249 (295)
.--...+.+.++.|.......+-.-+. .....+...=...+.++.+. ...+.+..++-....
T Consensus 461 ~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~ 524 (574)
T smart00638 461 EEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL 524 (574)
T ss_pred hheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc
Confidence 223345667777777555443333332 11122223333445555432 344555554444433
No 370
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.08 E-value=43 Score=28.66 Aligned_cols=243 Identities=9% Similarity=-0.046 Sum_probs=136.4
Q ss_pred CCCCCHH-HHHHHHHHHHhccChhHHHHHHhhcccC------CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC
Q 022531 6 EFVLSDS-DYATRIDLMTKVFGIHSGERYFEGLPLS------AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN 78 (295)
Q Consensus 6 ~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 78 (295)
-+.|+-. ....+...+.+ +.+++..+-+.+... ..-..++..++....+.++...|.+.+.-++..+ |+
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~ 330 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PR 330 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--Cc
Confidence 3455433 44556666655 444444444333322 1246789999999999999999999998777654 43
Q ss_pred HHHHHHH-------HHHHHh----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH---HHccCC-HHHHHHHHHHHhhc
Q 022531 79 ALMYNEM-------MTLYMS----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISS---CAATLN-IDQVKKFLDEMSCD 143 (295)
Q Consensus 79 ~~~~~~l-------i~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~---~~~~~~-~~~a~~~~~~~~~~ 143 (295)
...-.-+ -+..+. .-+..+-+.+|+.....++..- ..-.-|+.+ +-+.|. -++|+.+++.+.+-
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 3322111 112221 1123344556666655544311 122223322 445555 78899999888863
Q ss_pred CCCCCCHHHHHHHHH----HHHhc---CchhhHHHHHHHHHHHhcCCCcc----ccHHHHHHH--HHhcCCHHHHHHHHH
Q 022531 144 SGGSDDWVKYVNLVN----IYITA---SHLVNAESSTLVEAEKSITQRQW----ITYDFLIIL--YAGLGNKDKIDQIWK 210 (295)
Q Consensus 144 ~~~~~~~~~~~~l~~----~~~~~---~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~--~~~~g~~~~a~~~~~ 210 (295)
.+-|...-|.+.. +|.+. ..+..-.. +-+-+.+.|..|-. ..-|.|.++ +...|++.++.-.-.
T Consensus 410 --t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlk-Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 410 --TNYDIECENIVFLFVKQAYKQALSMHAIPRLLK-LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2334433333322 22221 22223333 23333345554432 233344333 346788888876666
Q ss_pred HHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 022531 211 SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLL 264 (295)
Q Consensus 211 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 264 (295)
.+.+ +.|++.+|..+.-+.....++++|+.++..+ +|+..++++=+
T Consensus 487 WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~dskv 532 (549)
T PF07079_consen 487 WLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRDSKV 532 (549)
T ss_pred HHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHHHHH
Confidence 5554 5899999998888889999999999999873 46777766543
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.72 E-value=34 Score=27.35 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 189 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 189 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
++.....|..+|.+.+|.++.++....+ +.+...+-.++..+...||--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445567778888888888888776654 44555566788888888887777776666643
No 372
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.50 E-value=65 Score=30.38 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=62.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCChHhHHH-
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSN--L-SFNALMYNEMMTLYMSVGQV--EKVALVVEEIKRKNVVPDIFTYNL- 119 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~-~p~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~- 119 (295)
-|..|+..|...|..++|+++|.+..... . .--..-+.-++..+-+.+.. +-++++-+...+....-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47888888888888888888888887632 0 00111222344444444433 444444433333221111111111
Q ss_pred -----------HHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 022531 120 -----------WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 162 (295)
Q Consensus 120 -----------li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (295)
.+-.|......+-+..+++.+... .-.++....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~-~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISD-NRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHh-ccccchHHHHHHHHHHHH
Confidence 122345556667777777777765 344555556666666654
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.41 E-value=18 Score=26.92 Aligned_cols=55 Identities=9% Similarity=-0.029 Sum_probs=27.7
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhc
Q 022531 126 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 181 (295)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (295)
...+.+......+.+.+.-...|+..+|..++.++...|+.++|.+ ...++..-.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~-~~~~~~~ly 174 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQ-WLARARRLY 174 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC
Confidence 3334333333333333322335666666666666666666666666 555444433
No 374
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.31 E-value=14 Score=23.67 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=37.9
Q ss_pred HhcCCHHHHHHHHHHHHh----ccCCCC--H--HhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 022531 197 AGLGNKDKIDQIWKSLRM----TKQKMT--S--RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLL 264 (295)
Q Consensus 197 ~~~g~~~~a~~~~~~m~~----~~~~~~--~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 264 (295)
.+.|++..|.+-+.+..+ .+.... . .....+.......|+.++|.+.+++..+.....-|..+....+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al 84 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYAL 84 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 467788887665555432 222221 1 1122345556677888888888888777554444554444333
No 375
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=77.14 E-value=9.9 Score=20.83 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=21.8
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHH
Q 022531 197 AGLGNKDKIDQIWKSLRMTKQKMTSRNYICILS 229 (295)
Q Consensus 197 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 229 (295)
.+.|-..++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777766666665544
No 376
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=76.92 E-value=3 Score=28.71 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=22.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 124 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 124 (295)
..|.-..|-++|++|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345566778888888888887774 66666543
No 377
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=76.75 E-value=37 Score=27.16 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHH----HhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERV----KQSNLSFNALMYN-EMMTLYMSVGQVEKVALVVEEIKRKNVVPDI--- 114 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--- 114 (295)
-...|..+...|++.++.+.+.+...+. ...|.+.|+...- -|.-.|....-.++-++..+.|.+.|...+-
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 4667888888888888887777665544 3455554443222 2222344444467777778888888764432
Q ss_pred -HhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 115 -FTYNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 115 -~~~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
.+|.-+. +....++.+|-.++.+...
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 2333322 2334567777777766654
No 378
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=76.62 E-value=39 Score=27.46 Aligned_cols=136 Identities=14% Similarity=0.113 Sum_probs=73.3
Q ss_pred CCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHH----hcCCCc
Q 022531 110 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK----SITQRQ 185 (295)
Q Consensus 110 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 185 (295)
++.|...++.+..+ +..+.++-.+..+...+..|-..-..++-.....|++-|+.+.|.+ .+..... .|.+.|
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~-~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALE-ALRKTYEKTVSLGHKID 142 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhhcccchh
Confidence 44555555555432 1223334444444444433433344566677788888888888888 5554443 455556
Q ss_pred cccHHHHH-HHHHhcCCHHHHHHHHHHHHhccCCCCHHh----HHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 186 WITYDFLI-ILYAGLGNKDKIDQIWKSLRMTKQKMTSRN----YICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 186 ~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
+..+..-+ -.|....-+.+-++..+.+.+.|...+... |..+- |....++.+|-.+|-.....
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 55444322 223334445555566666666666555432 33222 23445788888887766553
No 379
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=76.41 E-value=38 Score=27.11 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=71.8
Q ss_pred CCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHH----hcCCCcc
Q 022531 111 VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK----SITQRQW 186 (295)
Q Consensus 111 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 186 (295)
+.|..-+++++.- +..+.++--+-+++....+|-.....++..+...|++.++.+.+.+ +..+... .+.+.|+
T Consensus 78 kfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~-~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 78 KFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFE-WMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred ehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHhcccchhh
Confidence 3444555555432 1112333323334444433444556677788888888888888887 5444333 3444443
Q ss_pred ccHHH-HHHHHHhcCCHHHHHHHHHHHHhccCCCCHHh----HHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 187 ITYDF-LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN----YICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 187 ~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
...-+ |.-.|....-+++-++..+.|.+.|....... |..+. +....++.+|-.++......
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 22221 22233444446777777788888876554432 22221 22344677777777665543
No 380
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=76.02 E-value=58 Score=29.12 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCC
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNL 75 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 75 (295)
..|..|+..+. .=+.+.-.++++++.. .+ ...+..++++....|.......+.+.+....+
T Consensus 311 ~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 311 AKFLRLVRLLR-TLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 34444444432 2233444444444432 11 45666677777777775444444444444443
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.48 E-value=65 Score=29.38 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 022531 202 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM 281 (295)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 281 (295)
..++...+...... ..+......-++...+.++++.+...+..|...... ...-.-=+.+++...|+.++|..+|+
T Consensus 295 ~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~--~~rw~YW~aRa~~~~g~~~~A~~~~~ 370 (644)
T PRK11619 295 TDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKE--KDEWRYWQADLLLEQGRKAEAEEILR 370 (644)
T ss_pred CHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc--CHhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455555443222 123334444455555788888888888877554321 22222226667667888888888888
Q ss_pred HHH
Q 022531 282 LLL 284 (295)
Q Consensus 282 ~m~ 284 (295)
.+.
T Consensus 371 ~~a 373 (644)
T PRK11619 371 QLM 373 (644)
T ss_pred HHh
Confidence 764
No 382
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.30 E-value=5.2 Score=22.53 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=11.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 022531 227 ILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
+.-++.+.|++++|.+..+.+.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444555555555555555554
No 383
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.12 E-value=12 Score=20.57 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHH
Q 022531 93 GQVEKVALVVEEIKRKNVVPDIFTYN 118 (295)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~p~~~~~~ 118 (295)
|-.+++..++++|.+.|+..+...+.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHH
Confidence 33334444444444444333333333
No 384
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=75.03 E-value=35 Score=26.10 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 022531 41 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF---NALMYN--EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF 115 (295)
Q Consensus 41 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 115 (295)
.+...-+|.|+--|.-...+.+|-+.|.. ..|++| |..+++ .-|......|+.++|++...++-..-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 34555666666666666666666666643 333333 333333 45556677788888877777665433333332
Q ss_pred hHHHHHHH----HHccCCHHHHHHHHHHHh
Q 022531 116 TYNLWISS----CAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 116 ~~~~li~~----~~~~~~~~~a~~~~~~~~ 141 (295)
.+--+... ..+.|..++|+++.+.-.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 22222221 345666677776665533
No 385
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.72 E-value=66 Score=29.10 Aligned_cols=195 Identities=14% Similarity=0.069 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHH-hCCCCCCH--HHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCChH--
Q 022531 42 KTSETYTALLHLYAGAKWTEKAEELFERVK-QSNLSFNA--LMYNEMMTLYM-SVGQVEKVALVVEEIKRKNVVPDIF-- 115 (295)
Q Consensus 42 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~--~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~-- 115 (295)
.+...|..||.. |+..++-+. +..++|.. .++--+...+. ...+++.|+..+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 356677777654 555566555 44444533 34555666655 6778999999999775443223221
Q ss_pred ---hHHHHHHHHHccCCHHHHHHHHHHHhhcCC---CCCCHHHHHHH-HHHHHhcCchhhHHHHHHHHHHHhc---CCCc
Q 022531 116 ---TYNLWISSCAATLNIDQVKKFLDEMSCDSG---GSDDWVKYVNL-VNIYITASHLVNAESSTLVEAEKSI---TQRQ 185 (295)
Q Consensus 116 ---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~ 185 (295)
.-..++..+.+.+... |...+++..+... ..+-...+.-+ +..+...++...|.+ .++.....- ..|-
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~-~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALE-NLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHhhhcCCHH
Confidence 2334556666666555 8888888665311 11222233333 222333378888888 666665432 2233
Q ss_pred cccHHHHHHHHH--hcCCHHHHHHHHHHHHhccC---------CCCHHhHHHHHHHH--HhcCChHHHHHHHHHH
Q 022531 186 WITYDFLIILYA--GLGNKDKIDQIWKSLRMTKQ---------KMTSRNYICILSSY--LMLGHLKEVGEIIDQW 247 (295)
Q Consensus 186 ~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~---------~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~ 247 (295)
..++..++.+.. +.+..+++.+.++++..... .|...+|..+++.+ ...|+++.+...++++
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444433 45667777777776633222 22344555566544 4677766776665554
No 386
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.69 E-value=42 Score=26.82 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=22.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHH
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN 118 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 118 (295)
+.+...+.+++++|+..|.++...|+..|..+.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 4445566677777777777777777666665433
No 387
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.90 E-value=22 Score=31.43 Aligned_cols=101 Identities=11% Similarity=-0.072 Sum_probs=62.6
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHH
Q 022531 57 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 136 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 136 (295)
.|+...|..++.......-...-.....|.+.+.+.|-.-.|-.++.+..... ...+.++..+.+++.-..+.++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 57777777777665543211112233445566666677777777777666543 33456677778888888888888888
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHH
Q 022531 137 LDEMSCDSGGSDDWVKYVNLVNIY 160 (295)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~ 160 (295)
|++..+. .+.+...-+.+...-
T Consensus 699 ~~~a~~~--~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 699 FRQALKL--TTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHhc--CCCChhhHHHHHHHH
Confidence 8887764 244455555554433
No 388
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=73.40 E-value=66 Score=28.49 Aligned_cols=184 Identities=8% Similarity=-0.064 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCC--CCCHHHHHH
Q 022531 78 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGG--SDDWVKYVN 155 (295)
Q Consensus 78 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ 155 (295)
+..+|+.-+.--...|+.+.+.-+|+...-- +..=...|--.+.-....|+.+-|..++....+- -. .|......+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKI-HVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCcHHHHHHH
Confidence 4567888888888889999888888876531 1111223333333344448888888776665442 22 233333222
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHhcCCCcc-ccHHHHHHHHHhcCCHHHHH---HHHHHHHhccCCCCHHhHHHHHH--
Q 022531 156 LVNIYITASHLVNAESSTLVEAEKSITQRQW-ITYDFLIILYAGLGNKDKID---QIWKSLRMTKQKMTSRNYICILS-- 229 (295)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~---~~~~~m~~~~~~~~~~~~~~li~-- 229 (295)
......|+++.|.. .++.+.+.. |+. ..-..-+..-.+.|+.+.+. +++........ +......+.-
T Consensus 374 --~f~e~~~n~~~A~~-~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~ 446 (577)
T KOG1258|consen 374 --RFEESNGNFDDAKV-ILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKF 446 (577)
T ss_pred --HHHHhhccHHHHHH-HHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHH
Confidence 22345678999998 888887766 332 22222334456778888777 44443333222 2222222222
Q ss_pred ---HHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCC
Q 022531 230 ---SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL 272 (295)
Q Consensus 230 ---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 272 (295)
.+.-.++.+.|..++.++... .+++...|..+++-+...+-
T Consensus 447 ~r~~~~i~~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 447 ARLRYKIREDADLARIILLEANDI--LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhCCc
Confidence 233467888999999988874 35788888888887776653
No 389
>PRK10941 hypothetical protein; Provisional
Probab=73.30 E-value=44 Score=26.49 Aligned_cols=79 Identities=8% Similarity=-0.124 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 022531 189 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF 267 (295)
Q Consensus 189 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (295)
.+.+-.+|.+.++++.|+++.+.+... .|+. .-+---.-.|.+.|.+..|..=++...+.....|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 345666788899999999999988775 4443 3344455568889999999998888887765566666665555555
Q ss_pred Hc
Q 022531 268 SD 269 (295)
Q Consensus 268 ~~ 269 (295)
..
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 43
No 390
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.52 E-value=9.5 Score=30.42 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 022531 83 NEMMTLYMSVGQVEKVALVVEEIKRKNVV 111 (295)
Q Consensus 83 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 111 (295)
|..|..-.+.||+++|++++++..+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45566666666666666666666665554
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.13 E-value=6.6 Score=18.62 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=7.2
Q ss_pred cHHHHHHHHHHHHhC
Q 022531 59 WTEKAEELFERVKQS 73 (295)
Q Consensus 59 ~~~~a~~~~~~m~~~ 73 (295)
+++.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344455555554443
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.62 E-value=60 Score=27.30 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=42.6
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFNAL--MYNEMMTLYMS--VGQVEKVALVVEEIKRK 108 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~--~~~~~~a~~~~~~m~~~ 108 (295)
+..+.+.+++..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445889999999999999987 666555 55666666654 45788999999987764
No 393
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=71.60 E-value=39 Score=25.16 Aligned_cols=70 Identities=7% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChH----hHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 73 SNLSFNALMYNEMMTLYMSV----GQVEKVALVVEEIKRKNVVPDIF----TYNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 73 ~~~~p~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
.|..++...++-++..+.+. ++.+-+..+=.+....++.++-. ....-+..|-..|||.+.-.+|-....
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~ 79 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM 79 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh
Confidence 46667777777777666543 34444444444555554444322 222223445566666655555544443
No 394
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=71.57 E-value=27 Score=23.20 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKR 107 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 107 (295)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366677777777777777777766665
No 395
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=71.39 E-value=11 Score=30.10 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 82 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 82 (295)
+..-|+..|..-.+.|++++|+.++++.++.|+.--..+|
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3445779999999999999999999999999964433343
No 396
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=71.31 E-value=33 Score=24.22 Aligned_cols=65 Identities=8% Similarity=-0.001 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 022531 100 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 100 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
.+.+.+++.|++++.. -..++..+...+++-.|.++++++.+. +...+..|....++.+...|-+
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 3455666777776543 344666777776767888888888876 5555566655566666666644
No 397
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=71.20 E-value=36 Score=27.43 Aligned_cols=44 Identities=9% Similarity=0.263 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 99 ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 99 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
.++|+.|.+.++.|.-.+|.-+.-.+.+.-.+...+.+++.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 44566666666666666655555555555566666666666655
No 398
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=71.14 E-value=30 Score=31.11 Aligned_cols=73 Identities=10% Similarity=0.057 Sum_probs=53.7
Q ss_pred HHHHHHHhccChhHHHHHHhhcccCC----CCHHHHHHHHHHHHccCcHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 022531 16 TRIDLMTKVFGIHSGERYFEGLPLSA----KTSETYTALLHLYAGAKWTE------KAEELFERVKQSNLSFNALMYNEM 85 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~~~~p~~~~~~~l 85 (295)
+|+++|..+|++..+.++++.+.... .-...+|..|+...+.|.++ .|.+++++.. +.-|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 79999999999999999999887752 24678888899999998754 3444444444 33477788777
Q ss_pred HHHHHh
Q 022531 86 MTLYMS 91 (295)
Q Consensus 86 i~~~~~ 91 (295)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 776544
No 399
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=70.74 E-value=49 Score=29.91 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=54.4
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCChHhHHHH
Q 022531 49 ALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVE------KVALVVEEIKRKNVVPDIFTYNLW 120 (295)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~~~~p~~~~~~~l 120 (295)
+|..+|...|++..+.++++...... -+.-...+|.-|+..++.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 89999999999999999999988543 2333567888899999998754 3444444443 45577788877
Q ss_pred HHHHHc
Q 022531 121 ISSCAA 126 (295)
Q Consensus 121 i~~~~~ 126 (295)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766443
No 400
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=70.35 E-value=34 Score=24.91 Aligned_cols=59 Identities=8% Similarity=-0.066 Sum_probs=30.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC
Q 022531 70 VKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 129 (295)
Q Consensus 70 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 129 (295)
+.+.|++++..-. .++..+...++.-.|.++++++.+.+..++..|-.-.|..+.+.|-
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3444555444332 3333343444555666666666666655555554444555555553
No 401
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.07 E-value=85 Score=28.41 Aligned_cols=195 Identities=14% Similarity=0.064 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCC--hHhHHHHHHHHH-ccCCHHHHHHHHHHHhhcCCCCCCHH--
Q 022531 78 NALMYNEMMTLYMSVGQVEKVALVVEEIK-RKNVVPD--IFTYNLWISSCA-ATLNIDQVKKFLDEMSCDSGGSDDWV-- 151 (295)
Q Consensus 78 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~--~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-- 151 (295)
+...|..||.. |++.++.+. +..+.|. ..++-.+...+. ...+++.|...+.+.... ...++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l-~~~~~~~d~ 98 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILL-CERHRLTDL 98 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccchHHH
Confidence 56677777765 455666666 3334443 344555566654 778999999999987553 1122221
Q ss_pred ---HHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccH----HHH-HHHHHhcCCHHHHHHHHHHHHhcc---CCCC
Q 022531 152 ---KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY----DFL-IILYAGLGNKDKIDQIWKSLRMTK---QKMT 220 (295)
Q Consensus 152 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~~~ 220 (295)
....++..+.+.+... |.. ..+...+.........| ..+ +..+...++...|.+.++.+...- ..|.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~-~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALK-NLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHH-HHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2235667777777766 888 66665554333222222 222 222223479999999998875432 2444
Q ss_pred HHhHHHHHHHHH--hcCChHHHHHHHHHHhhhcC--------CCCCHHHHHHHHHHHH--ccCChHHHHHHHHHHH
Q 022531 221 SRNYICILSSYL--MLGHLKEVGEIIDQWKQSAT--------SDFDISACNRLLGAFS--DVGLTEKANEFHMLLL 284 (295)
Q Consensus 221 ~~~~~~li~~~~--~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~ 284 (295)
...+-.++.+.. +.+..+++.+.++++..... ..|-..+|..+++.++ ..|+++.+...++++.
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444545555544 45656777777776633211 2356777888877654 5677667776666553
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=69.80 E-value=30 Score=22.99 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=16.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 117 YNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666554
No 403
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.48 E-value=43 Score=24.75 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhCCCCCCh--HhH-----HHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 95 VEKVALVVEEIKRKNVVPDI--FTY-----NLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~~p~~--~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
++.|+.+|+.+.+.--.|.. ... -..+-.|.+.|.+++|.+++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 45677777776655332211 111 12234577788888888888777653
No 404
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.07 E-value=56 Score=25.90 Aligned_cols=155 Identities=9% Similarity=0.023 Sum_probs=83.2
Q ss_pred hccChhHHHHHHhhcccCCC--C---HHHHHHHHHHHHccCcHHHHHHHHHHHHhC---CCC--CCHHHHHHHHHHHHhc
Q 022531 23 KVFGIHSGERYFEGLPLSAK--T---SETYTALLHLYAGAKWTEKAEELFERVKQS---NLS--FNALMYNEMMTLYMSV 92 (295)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~p--~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~--p~~~~~~~li~~~~~~ 92 (295)
+...+++|+.-|+...+.++ . -...-.+|....+.+++++..+.+.+|... .+. -+..+.|+++..-+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34467777777777766543 2 223344567777777777777777766421 111 1344566666666656
Q ss_pred CCHHHHHHHHHHHH----hC-CCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCC---CCC-------HHHHHHHH
Q 022531 93 GQVEKVALVVEEIK----RK-NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGG---SDD-------WVKYVNLV 157 (295)
Q Consensus 93 ~~~~~a~~~~~~m~----~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~-------~~~~~~l~ 157 (295)
.+.+--...|+.-. +. +-..-..|-..|...|...+.+.+..++++++...-.. ..+ ..+|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 55555555544322 11 11111233445666677777777777777776653111 111 13455555
Q ss_pred HHHHhcCchhhHHHHHHHHHH
Q 022531 158 NIYITASHLVNAESSTLVEAE 178 (295)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~ 178 (295)
.+|....+-..-.. ++++..
T Consensus 199 QmYT~qKnNKkLK~-lYeqal 218 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKA-LYEQAL 218 (440)
T ss_pred hhhhhhcccHHHHH-HHHHHH
Confidence 56655555554444 555443
No 405
>PF13934 ELYS: Nuclear pore complex assembly
Probab=69.07 E-value=49 Score=25.45 Aligned_cols=104 Identities=9% Similarity=-0.031 Sum_probs=66.2
Q ss_pred HHHHHHHHHHh--ccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 13 DYATRIDLMTK--VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 13 ~~~~li~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
.|..+++++-. .+++++|.+.+-.-.- ....-..++.++...|+.+.|+++++...-.. .+......++.. .
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~---~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-L 151 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSL---IPWFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCC---CcccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-H
Confidence 46677777754 4678888888743211 11222357888888999999999998765443 233444444445 6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 125 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 125 (295)
.++.+.+|+.+-+...+.. ....+..++..+.
T Consensus 152 a~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 6789999998776665531 1455666666655
No 406
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.96 E-value=1.1e+02 Score=29.07 Aligned_cols=169 Identities=11% Similarity=-0.025 Sum_probs=98.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHhcCch--hhHHHHHHHHHHHhcCCCccccHHH
Q 022531 116 TYNLWISSCAATLNIDQVKKFLDEMSCDS--GGSDDWVKYVNLVNIYITASHL--VNAESSTLVEAEKSITQRQWITYDF 191 (295)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~ 191 (295)
-|..|+..|...|+.++|+++|.+..... ....-..-+-.++..+.+.+.. +-.++ +-....+..+......++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~-y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILE-YADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHH-HhhhhhccCchhheeeeec
Confidence 48889999999999999999999988742 1111122334466766676665 55555 4444444433322222222
Q ss_pred ------------HHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCC--------hHHHHHH-----HHH
Q 022531 192 ------------LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH--------LKEVGEI-----IDQ 246 (295)
Q Consensus 192 ------------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--------~~~A~~~-----~~~ 246 (295)
-+-.|......+-++.+++.+....-.++....+.++..|+..=+ .+++.+. +..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~ 664 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD 664 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH
Confidence 223456677778888888888776666677777778777764222 2233333 111
Q ss_pred Hhh-hcCCCCC--------HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 247 WKQ-SATSDFD--------ISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 247 ~~~-~~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+.. .....|. ...|....-.+.+.|+.++|+.++-..+.
T Consensus 665 ~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 665 FLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 111 1111222 22233333334588999999988776553
No 407
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.96 E-value=96 Score=28.54 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=66.0
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCCH--HHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCC
Q 022531 124 CAATLNIDQVKKFLDEMSCDSGGSDDW--VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 201 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 201 (295)
+.--|+-++|..+.++|.... .|-. .-..++..+|+-.|+-....+ ++.-... .+..|+.-+....-++.-..+
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~GTgnnkair~-lLh~aVs-D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK--DPILRYGGMYTLALAYVGTGNNKAIRR-LLHVAVS-DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC--chhhhhhhHHHHHHHHhccCchhhHHH-hhccccc-ccchHHHHHHHHHheeeEecC
Confidence 444566667777777777541 2211 112345566777777666555 4443322 233455555555556666777
Q ss_pred HHHHHHHHHHHHhccCCCCHHhHH--HHHHHHHhcCChHHHHHHHHHHhh
Q 022531 202 KDKIDQIWKSLRMTKQKMTSRNYI--CILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
++....+..-+.++. .|-.+.=. .|.-+|+..|. .+|..+++-|..
T Consensus 587 p~~~~s~V~lLses~-N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESY-NPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhhc-ChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 777777777665542 34332222 23334444444 567888887765
No 408
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.79 E-value=27 Score=22.12 Aligned_cols=65 Identities=8% Similarity=0.102 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHH
Q 022531 63 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV 133 (295)
Q Consensus 63 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 133 (295)
+.++++.+.+.|+ .+..-...+-.+--..|+.+.|.+++..+. .| | ..|...+.++-..|+-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhh
Confidence 4455555555553 222222222222224456666666666665 32 2 2455556666555554443
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.39 E-value=57 Score=25.73 Aligned_cols=23 Identities=17% Similarity=-0.042 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHhcCchhhHHH
Q 022531 149 DWVKYVNLVNIYITASHLVNAES 171 (295)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~ 171 (295)
++.....+...|.+.|++.+|+.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~ 111 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAER 111 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHH
Confidence 34444555566666666666555
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.19 E-value=39 Score=28.54 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhh------cCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 224 YICILSSYLMLGHLKEVGEIIDQWKQS------ATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
...|++..+-.||+..|+++++.+.-. ..+.-.+.+|-.+.-+|.-.+++.+|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777654221 1122244456667777777777777777777654
No 411
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.75 E-value=47 Score=24.55 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCCC--CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHcc
Q 022531 60 TEKAEELFERVKQSNLSF--NALMYN-----EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT 127 (295)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p--~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 127 (295)
++.|+.+|+.+.+.--.| -..... ..+-.|.+.|.+++|.+++++.... |+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 567999999888663222 111222 2334688999999999999999874 4544444444443333
No 412
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.32 E-value=78 Score=26.87 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=42.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Q 022531 116 TYNLWISSCAATLNIDQVKKFLDEMSCDSG------GSDDWVKYVNLVNIYITASHLVNAESSTLVEAE 178 (295)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (295)
+...|++..+-.||+..|+++++.+.-... ......++..+.-+|.-.+++.+|.+ .|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir-~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIR-TFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 344567777888999999988876543211 12234566677778888889999888 666554
No 413
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=67.06 E-value=51 Score=24.63 Aligned_cols=171 Identities=14% Similarity=0.007 Sum_probs=98.6
Q ss_pred CCCCCCHHHHHHHHHHHHhc----cChhHHHHHHhhcccCCC------CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC
Q 022531 5 KEFVLSDSDYATRIDLMTKV----FGIHSGERYFEGLPLSAK------TSETYTALLHLYAGAKWTEKAEELFERVKQSN 74 (295)
Q Consensus 5 ~~~~~~~~~~~~li~~~~~~----~~~~~A~~~~~~~~~~~p------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 74 (295)
.|..+++..++.++..+.+. +.++.+..+=.+.....| +......=+..|-+.|++.+.-.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 57788999999998888654 344444444443333332 33344444667778888888777776655432
Q ss_pred CCCC-HHHHHH-HHHHHHhcC--CHHHHHHHHHHHHhCCCCCC-------hHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 75 LSFN-ALMYNE-MMTLYMSVG--QVEKVALVVEEIKRKNVVPD-------IFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 75 ~~p~-~~~~~~-li~~~~~~~--~~~~a~~~~~~m~~~~~~p~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
-.++ ...+.. +..++.+.- ++.--...|-+-.-...+-| ..+=-+++..|-+..+|.++.++++.+.+.
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 111111 111111110 11111122222222222111 133455777888899999999998877542
Q ss_pred -------------CCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 022531 144 -------------SGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 176 (295)
Q Consensus 144 -------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (295)
....+-..+.|.....+.+.|.+|.|.. ++.+
T Consensus 162 ~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~-vLre 206 (233)
T PF14669_consen 162 QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALW-VLRE 206 (233)
T ss_pred hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHH-HHhc
Confidence 1235677888999999999999999999 7663
No 414
>PRK09857 putative transposase; Provisional
Probab=66.89 E-value=65 Score=25.95 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 022531 224 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 291 (295)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 291 (295)
+..++....+.++.++..++++.+.+.. ++......++..-+.+.|.-+++.++..+|+..|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~--~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS--PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4455555556677666667776665542 22333444566777777777778888888888887643
No 415
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.53 E-value=8.2 Score=26.63 Aligned_cols=31 Identities=10% Similarity=0.225 Sum_probs=19.9
Q ss_pred hcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHH
Q 022531 198 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSS 230 (295)
Q Consensus 198 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 230 (295)
..|.-.+|..+|+.|.+.|-.||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345556677777777777776663 5555544
No 416
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.59 E-value=74 Score=26.01 Aligned_cols=96 Identities=11% Similarity=0.127 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHH----hCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCh----H
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVK----QSNLSFNALMYNEMMT-LYMSVGQVEKVALVVEEIKRKNVVPDI----F 115 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~----~ 115 (295)
..+-.....||+-|+-+.|++.+.+-. ..|.+.|+..+..-+. .|....-..+-++..+.+.+.|...+- .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 345555556666666666665554432 3344444443332222 222222233444444444455543322 2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 116 TYNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
+|..+- |....++.+|-.+|-+...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 233221 2333456666666555443
No 417
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=65.58 E-value=18 Score=21.45 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 022531 79 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKN 109 (295)
Q Consensus 79 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 109 (295)
...++.++..+++..-.++++..+.+..+.|
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444444444444444444444444444
No 418
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=65.39 E-value=37 Score=22.44 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHH
Q 022531 131 DQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 209 (295)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 209 (295)
++|...+.+++..-|+.| |...--++...+.....+..+.. -...+...+..|| .|+++.....+
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~~-----~~d~~~E~~~~T~---------~Ge~~~i~~al 70 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVADI-----KLDGNVEIDWYTF---------AGEYGDIYLAL 70 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCcccc-----CCCCCeEEEeeee---------cCchHHHHHHH
Confidence 456677777777667777 55443333333333222221111 0012222233333 25555554444
Q ss_pred HHHH--hccCCCCHHhHHHHHHHHHhc
Q 022531 210 KSLR--MTKQKMTSRNYICILSSYLML 234 (295)
Q Consensus 210 ~~m~--~~~~~~~~~~~~~li~~~~~~ 234 (295)
=... ..+..++...+...+.+....
T Consensus 71 Lkq~~~~~~~~~d~e~l~~~~~lHl~r 97 (105)
T TIGR03184 71 LKQRCVADGPELDDESLAKALNLHVHR 97 (105)
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 3322 445556666666555555443
No 419
>PRK12356 glutaminase; Reviewed
Probab=65.22 E-value=41 Score=27.33 Aligned_cols=14 Identities=7% Similarity=0.299 Sum_probs=8.1
Q ss_pred CCCCCHHHHHHHHH
Q 022531 145 GGSDDWVKYVNLVN 158 (295)
Q Consensus 145 ~~~~~~~~~~~l~~ 158 (295)
|..|+...||+++.
T Consensus 93 G~EPSG~~FNsi~~ 106 (319)
T PRK12356 93 GADPTGLPFNSVIA 106 (319)
T ss_pred CCCCCCCCcchHHH
Confidence 45566666666554
No 420
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.14 E-value=46 Score=23.50 Aligned_cols=83 Identities=11% Similarity=0.082 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhc-----CCCccccHHHHHHHHHhcCC-HHHHHHHHHHHHhccCCCCHHhHHH
Q 022531 153 YVNLVNIYITASHLVNAESSTLVEAEKSI-----TQRQWITYDFLIILYAGLGN-KDKIDQIWKSLRMTKQKMTSRNYIC 226 (295)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~ 226 (295)
.++++.-....++...... +++.+..-. ...+...|.+++.+.++... --.+..+|+-|++.+.++++..|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~-~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVS-ILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHH-HHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4555555555566655555 444432110 12244567777777655555 4455667777777677777777777
Q ss_pred HHHHHHhcCC
Q 022531 227 ILSSYLMLGH 236 (295)
Q Consensus 227 li~~~~~~~~ 236 (295)
+|.++.+...
T Consensus 121 li~~~l~g~~ 130 (145)
T PF13762_consen 121 LIKAALRGYF 130 (145)
T ss_pred HHHHHHcCCC
Confidence 7777766533
No 421
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.07 E-value=38 Score=22.49 Aligned_cols=29 Identities=14% Similarity=0.008 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 255 FDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 255 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
||...|- .-+-.+.|-.+++...+.++..
T Consensus 69 pdL~p~~--AL~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 69 PDLEPWA--ALCAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp GGGHHHH--HHHHHHCT-HHHHHHHHHHHCT
T ss_pred ccHHHHH--HHHHHhhccHHHHHHHHHHHHh
Confidence 4555442 2233455555555555554433
No 422
>PRK09462 fur ferric uptake regulator; Provisional
Probab=64.95 E-value=45 Score=23.51 Aligned_cols=35 Identities=3% Similarity=-0.156 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 94 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555544444444333344444443
No 423
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=64.32 E-value=58 Score=24.32 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=10.7
Q ss_pred hcCCHHHHHHHHHHHHh
Q 022531 198 GLGNKDKIDQIWKSLRM 214 (295)
Q Consensus 198 ~~g~~~~a~~~~~~m~~ 214 (295)
+.|+++.|.++++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45666666666666654
No 424
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=64.29 E-value=63 Score=24.78 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=63.1
Q ss_pred CCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccC-C--CCHHHHH--HHHHHHHccCcHHHHHHHHHHHHhCCCCCCHH
Q 022531 6 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-A--KTSETYT--ALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 80 (295)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~--p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 80 (295)
.+.+....+|.|+--|.-...+.+|.+.|..-..- . .|..+++ .-|....+.|++++|.+...++-..-+.-|..
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 45667777777776666666666677777654443 2 2444443 35667789999999999998876443333443
Q ss_pred HHHHHHH----HHHhcCCHHHHHHHHHH
Q 022531 81 MYNEMMT----LYMSVGQVEKVALVVEE 104 (295)
Q Consensus 81 ~~~~li~----~~~~~~~~~~a~~~~~~ 104 (295)
.+-.|.. -..+.|..++|++..+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3322222 24677778888877764
No 425
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.88 E-value=75 Score=25.49 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=23.9
Q ss_pred HHHHHhccChhHHHHHHhhcccCCC--C-------HHHHHHHHHHHHccCcHHHHHH
Q 022531 18 IDLMTKVFGIHSGERYFEGLPLSAK--T-------SETYTALLHLYAGAKWTEKAEE 65 (295)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~~p--~-------~~~~~~li~~~~~~~~~~~a~~ 65 (295)
.+-..+.+++++|+..+.++...+. + ..+...+...|.+.|+...--+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 3444556666666666666655421 1 2233344455555555444333
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.02 E-value=37 Score=21.68 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=10.2
Q ss_pred HHccCCHHHHHHHHHHHhh
Q 022531 124 CAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~ 142 (295)
....|++++|...+++..+
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4445555555555555443
No 427
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=61.61 E-value=20 Score=21.24 Aligned_cols=49 Identities=6% Similarity=-0.016 Sum_probs=23.8
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHc
Q 022531 219 MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 269 (295)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (295)
|....++.++..++.-.-.++++..+.+..+.|. .+..+|-.-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 3334455555555555555555555555555543 244444444444443
No 428
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=61.36 E-value=47 Score=22.30 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHH
Q 022531 131 DQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 209 (295)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 209 (295)
+++.+.+.++...-|+.| ++..--++...+.....++.... -...+..-+..||. |+.+.....+
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~~~~-----~~d~g~e~~~~t~~---------Ge~~~~~~~l 71 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSDEDI-----KDDSGLELNWKTFT---------GEYDDIYEAL 71 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCCCcc-----CCCCCeEEeeeeec---------CchHHHHHHH
Confidence 456667777766667777 55444444433333332321100 00122222223332 6666555544
Q ss_pred HHHHhccCCCCHHhHHHHHHHHHhc
Q 022531 210 KSLRMTKQKMTSRNYICILSSYLML 234 (295)
Q Consensus 210 ~~m~~~~~~~~~~~~~~li~~~~~~ 234 (295)
=.+.. |...+...+...+.+....
T Consensus 72 l~q~~-g~~~d~~~l~~~~~~Hl~r 95 (113)
T PF08870_consen 72 LKQRY-GPELDDEELPKYFKLHLDR 95 (113)
T ss_pred HHHHh-CCCCCHHHHHHHHHHHHHH
Confidence 44444 4555666666666665543
No 429
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.27 E-value=1.2e+02 Score=26.85 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=17.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 117 YNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
...++.-|.+.+++++|..++..|.=
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 34466677777777777777776654
No 430
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=61.12 E-value=91 Score=25.51 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=85.9
Q ss_pred CC-CHHHHHHHHHHHHccC------------cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 41 AK-TSETYTALLHLYAGAK------------WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 107 (295)
Q Consensus 41 ~p-~~~~~~~li~~~~~~~------------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 107 (295)
.| |+.+|-.++..--..- -.+.-+.++++..+.+ +-+...+-.+|..+.+..+.++..+.++++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45 8888888876432221 1456677888888774 45677788888889999999999999999988
Q ss_pred CCCCCChHhHHHHHHHHHc---cCCHHHHHHHHHHHhhc-----CCC----CCCHHH-------HHHHHHHHHhcCchhh
Q 022531 108 KNVVPDIFTYNLWISSCAA---TLNIDQVKKFLDEMSCD-----SGG----SDDWVK-------YVNLVNIYITASHLVN 168 (295)
Q Consensus 108 ~~~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~-----~~~----~~~~~~-------~~~l~~~~~~~~~~~~ 168 (295)
.... +...|...|..... .-.++....+|.+.... .+. .+...+ +.-+......+|..+.
T Consensus 94 ~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~ 172 (321)
T PF08424_consen 94 KNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER 172 (321)
T ss_pred HCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence 6322 56667777766543 23455666655554321 011 111122 2233334456888888
Q ss_pred HHHHHHHHHHHh
Q 022531 169 AESSTLVEAEKS 180 (295)
Q Consensus 169 a~~~~~~~~~~~ 180 (295)
|.. .++.+.+-
T Consensus 173 Ava-~~Qa~lE~ 183 (321)
T PF08424_consen 173 AVA-LWQALLEF 183 (321)
T ss_pred HHH-HHHHHHHH
Confidence 888 66666553
No 431
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.12 E-value=21 Score=30.46 Aligned_cols=107 Identities=12% Similarity=0.020 Sum_probs=75.3
Q ss_pred HHHHHHhccChhHHHHHHhhcccCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSAKTSE-TYTALLHLYAGAKWTEKAEELFERVKQSNLSFN-ALMYNEMMTLYMSVGQ 94 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~ 94 (295)
-...+.+.+.++.|..++....+..||-. .|..-..++.+.+++..|+.=+...++.. |+ ...|..=..++.+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHH
Confidence 34556677889999999999999888544 44444588999999999998888888775 32 2233333444555566
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHcc
Q 022531 95 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT 127 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 127 (295)
+.+|...|+.... +.|+..-....+.-|-+.
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 7777777777666 578877777777666543
No 432
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.75 E-value=1.1e+02 Score=26.66 Aligned_cols=106 Identities=10% Similarity=0.019 Sum_probs=70.5
Q ss_pred HHccCcHHHHHHHHHHHH---hCCCCCC----H-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCh----
Q 022531 54 YAGAKWTEKAEELFERVK---QSNLSFN----A-LMYNEMMTLYMSVGQVEKVALVVEEIKR-------KNVVPDI---- 114 (295)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~---~~~~~p~----~-~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~~~~p~~---- 114 (295)
+--.|++.+|.+++...- ..|...+ . ..||.|.-.+.+.|.+..+..+|.+..+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 344688888888876532 2332222 1 2357777777777877777777766553 4554432
Q ss_pred -------HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 022531 115 -------FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 162 (295)
Q Consensus 115 -------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (295)
.+||. .-.|...|++-.|.+.|.+..+ .+..++..|--+..+|..
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHH
Confidence 23443 3357788999999999998887 456788888888888863
No 433
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.17 E-value=1.1e+02 Score=26.64 Aligned_cols=58 Identities=7% Similarity=0.019 Sum_probs=32.7
Q ss_pred cCcHHHHHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 022531 57 AKWTEKAEELFERVKQS--------------NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF 115 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~--------------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 115 (295)
.|+...|+.++++.... |+ ++...+..++.+....+....|+.++.++.+.|..|...
T Consensus 213 ~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 213 DGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 46666666666654322 11 133334445555444445567777777777777766543
No 434
>PLN03025 replication factor C subunit; Provisional
Probab=60.16 E-value=93 Score=25.35 Aligned_cols=71 Identities=7% Similarity=-0.016 Sum_probs=40.9
Q ss_pred HhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccC------------CCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 179 KSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ------------KMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 179 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
+.+...+......++. ...|+...+...++......- .+.......++... ..++++.|...+.+
T Consensus 173 ~egi~i~~~~l~~i~~--~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~~~~~~a~~~l~~ 249 (319)
T PLN03025 173 AEKVPYVPEGLEAIIF--TADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LKGKFDDACDGLKQ 249 (319)
T ss_pred HcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 3455545555555554 346888888888875432111 12222233344444 45788888888888
Q ss_pred HhhhcC
Q 022531 247 WKQSAT 252 (295)
Q Consensus 247 ~~~~~~ 252 (295)
+...|.
T Consensus 250 ll~~g~ 255 (319)
T PLN03025 250 LYDLGY 255 (319)
T ss_pred HHHcCC
Confidence 887764
No 435
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.92 E-value=53 Score=22.48 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHH
Q 022531 97 KVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDE 139 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~ 139 (295)
.+..+|+.|...|+--. ..-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666655333 33455556666666777777766654
No 436
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.81 E-value=1.2e+02 Score=26.46 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=82.8
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCCHH-------HHHHHHHH-HHhcCchhhHHHHHHHHHHHhcCCCccccHH--HHHHH
Q 022531 126 ATLNIDQVKKFLDEMSCDSGGSDDWV-------KYVNLVNI-YITASHLVNAESSTLVEAEKSITQRQWITYD--FLIIL 195 (295)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~li~~ 195 (295)
-.|++.+|++-..+|.....-.|.+. ....++.. ++..+.++.|+. -|....+.....|...+. .+...
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~-hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEF-HFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHH-HHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 46889999988888876433334421 11223333 345677888887 666665554444543332 35566
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCHHhHHH--------HHHHH--HhcCChHHHHHHHHHHhhhcCC----CCCHHHHH
Q 022531 196 YAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC--------ILSSY--LMLGHLKEVGEIIDQWKQSATS----DFDISACN 261 (295)
Q Consensus 196 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--------li~~~--~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ 261 (295)
|.+.|+.+.-.++++.+- .||..++.. ++.++ ...+++.+|..++++-.+.... +...-...
T Consensus 414 YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 888887776666666543 232322221 22222 3678899999988887663211 11111122
Q ss_pred HHHHHHHccCChHHHHHHHH
Q 022531 262 RLLGAFSDVGLTEKANEFHM 281 (295)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~~ 281 (295)
-|...+...|+..++.....
T Consensus 490 LLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHhcchHHHHhccc
Confidence 23344556677766665444
No 437
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.79 E-value=2.4e+02 Score=30.06 Aligned_cols=62 Identities=3% Similarity=-0.083 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 187 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
.+|-...+...+.|+++.|...+-...+.+ . +..+..........|+...|+.++++-.+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 456666666667899999888776666654 2 3356677888889999999999999987654
No 438
>PRK14700 recombination factor protein RarA; Provisional
Probab=59.53 E-value=93 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVK 71 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 71 (295)
+......++..+ .|+...|+..++.+.
T Consensus 66 ~~~al~~ia~~a--~GDaR~aLN~LE~a~ 92 (300)
T PRK14700 66 DDGLYNAMHNYN--EGDCRKILNLLERMF 92 (300)
T ss_pred CHHHHHHHHHhc--CCHHHHHHHHHHHHH
Confidence 344444444442 566666666666533
No 439
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=59.24 E-value=96 Score=25.18 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=9.7
Q ss_pred hHHHHHHHHHhcCChHH
Q 022531 223 NYICILSSYLMLGHLKE 239 (295)
Q Consensus 223 ~~~~li~~~~~~~~~~~ 239 (295)
+|..|+.+++..|+.+.
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45556666666665543
No 440
>PRK10941 hypothetical protein; Provisional
Probab=57.94 E-value=94 Score=24.70 Aligned_cols=57 Identities=11% Similarity=-0.072 Sum_probs=27.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 022531 120 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 179 (295)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (295)
+-.+|.+.++++.|+.+.+.+..- .|.++.-+.--.-.|.+.|.+..|.. -++...+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~-DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALS-DLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHH-HHHHHHH
Confidence 444455555555555555555542 23333333334444555555555555 4444433
No 441
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.45 E-value=47 Score=21.07 Aligned_cols=66 Identities=12% Similarity=0.051 Sum_probs=35.8
Q ss_pred HHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 022531 205 IDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 277 (295)
Q Consensus 205 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 277 (295)
+.+++..+.+.|+ .+......+-.+-...|+.+.|.+++..+. .+ |+ .|...+.++...|..+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg---~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK---EG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC---Cc--HHHHHHHHHHHcCchhhhh
Confidence 4455555666553 233333333333335567777777777765 32 33 3566677777766655543
No 442
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=56.63 E-value=91 Score=25.29 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=38.1
Q ss_pred HHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 022531 206 DQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS 268 (295)
Q Consensus 206 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (295)
.++|+.|...++.|.-..|.-+.-.+.+.=.+.+.+.+|+.+..+. .-|..|+..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~------~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP------QRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh------hhhHHHHHHHH
Confidence 4577777777788877777766666667777777888888775532 11455555554
No 443
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.62 E-value=87 Score=23.87 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=10.9
Q ss_pred HHHHccCChHHHHHHHHHHHhc
Q 022531 265 GAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
....+.|+.++|.+.|.++...
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcC
Confidence 3444455555555555555443
No 444
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=56.61 E-value=1.2e+02 Score=25.53 Aligned_cols=89 Identities=9% Similarity=-0.021 Sum_probs=60.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHH------------HHHHHHhcCChHHHHHHHHHHhhhcCCCCCHH-
Q 022531 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC------------ILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS- 258 (295)
Q Consensus 192 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~------------li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~- 258 (295)
|..-+-..|+..+|..++.++. ..||.+ =++.|.-.+|+-.|--+-.....+....||..
T Consensus 137 L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~ 209 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQE 209 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHH
Confidence 4455667888888888877542 234433 25667778888887766666655544455543
Q ss_pred ----HHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 022531 259 ----ACNRLLGAFSDVGLTEKANEFHMLLLQKN 287 (295)
Q Consensus 259 ----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 287 (295)
.|+.++......+.+=.+.+.++.+-..|
T Consensus 210 lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 210 LKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 47788888778888888888887776544
No 445
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=56.36 E-value=15 Score=31.06 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=36.0
Q ss_pred hcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCC
Q 022531 233 MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 294 (295)
Q Consensus 233 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 294 (295)
....+++|+++.++..+.+. |-.. |-...|.+++.++.++|+.||..|
T Consensus 215 ~a~~ldeAl~~a~~~~~ag~--p~SI------------gl~GNaaei~~~l~~r~~~pD~vt 262 (561)
T COG2987 215 IAETLDEALALAEEATAAGE--PISI------------GLLGNAAEILPELLRRGIRPDLVT 262 (561)
T ss_pred hcCCHHHHHHHHHHHHhcCC--ceEE------------EEeccHHHHHHHHHHcCCCCceec
Confidence 45678889998888877663 4332 334567889999999999999876
No 446
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.30 E-value=1.4e+02 Score=26.14 Aligned_cols=109 Identities=12% Similarity=-0.062 Sum_probs=70.3
Q ss_pred HHHHhcCchhhHHHHHHHHHHHhcC-----CC---ccccHHHHHHHHHhcCCHHHHHHHHHHHH-------hccCCCCH-
Q 022531 158 NIYITASHLVNAESSTLVEAEKSIT-----QR---QWITYDFLIILYAGLGNKDKIDQIWKSLR-------MTKQKMTS- 221 (295)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~~~~~~~- 221 (295)
+.+--.|++..|.+ ++...--... .| ....||.|...+.+.|.+.-+..+|.... ..|++|..
T Consensus 248 q~eY~~gn~~kA~K-lL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMK-LLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHH-HHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34455788888888 4433211111 11 23445777666667777777766666554 24555442
Q ss_pred ----------HhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHcc
Q 022531 222 ----------RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 270 (295)
Q Consensus 222 ----------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (295)
.+|| ..-.|...|++-.|.+.|....+.. ..++..|-.|..+|.-.
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCIMA 382 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHH
Confidence 2243 3445678999999999999988854 67889999999999754
No 447
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=56.21 E-value=44 Score=20.32 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=24.0
Q ss_pred cChhHHHHHHhhcccCC-CCHHHHHHHHHHHHcc
Q 022531 25 FGIHSGERYFEGLPLSA-KTSETYTALLHLYAGA 57 (295)
Q Consensus 25 ~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~ 57 (295)
=+.+.|..++..++... +++..||++...+.+.
T Consensus 11 lDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 11 LDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 35677888888887764 4788888887777654
No 448
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=56.20 E-value=48 Score=21.87 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 022531 85 MMTLYMSVGQVEKVALVVEEI 105 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m 105 (295)
++..|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555555555443
No 449
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=55.68 E-value=57 Score=21.50 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=9.2
Q ss_pred HHHHHccCcHHHHHHHHHHH
Q 022531 51 LHLYAGAKWTEKAEELFERV 70 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m 70 (295)
+..|...|+.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444445555555555443
No 450
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=55.55 E-value=16 Score=18.05 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=9.4
Q ss_pred hhHHHHHHhhcccCCCCHHHH
Q 022531 27 IHSGERYFEGLPLSAKTSETY 47 (295)
Q Consensus 27 ~~~A~~~~~~~~~~~p~~~~~ 47 (295)
++.|..+|+......|++.+|
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHH
Confidence 344444444444444444444
No 451
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=55.22 E-value=47 Score=23.03 Aligned_cols=30 Identities=7% Similarity=0.022 Sum_probs=15.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhhcCCCC
Q 022531 226 CILSSYLMLGHLKEVGEIIDQWKQSATSDF 255 (295)
Q Consensus 226 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 255 (295)
.++-.+...|+++.|+++.+...+.+..-|
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P 82 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHGLPMP 82 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcCCCcc
Confidence 344444555666666666555555554333
No 452
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.76 E-value=1.3e+02 Score=25.46 Aligned_cols=91 Identities=5% Similarity=-0.065 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCC----CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhC---------CCCCC
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSA----KTSETYTALLHLYAGAKWTEKAEELFERVKQS---------NLSFN 78 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~p~ 78 (295)
..+.-+.+.|..+|+++.|.+.+...++-. ..+..|-.+|..-...|+|........+..+. .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456778899999999999999999966542 35667888888888899999888888877654 13333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022531 79 ALMYNEMMTLYMSVGQVEKVALVVEE 104 (295)
Q Consensus 79 ~~~~~~li~~~~~~~~~~~a~~~~~~ 104 (295)
...+..|..... +.++.|.+.|-.
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~ 254 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLL 254 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 444444444433 367777666643
No 453
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.53 E-value=1.3e+02 Score=25.17 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=8.6
Q ss_pred cCCHHHHHHHHHHH
Q 022531 199 LGNKDKIDQIWKSL 212 (295)
Q Consensus 199 ~g~~~~a~~~~~~m 212 (295)
.|+...|...++..
T Consensus 211 ~G~~R~al~~l~~~ 224 (363)
T PRK14961 211 HGSMRDALNLLEHA 224 (363)
T ss_pred CCCHHHHHHHHHHH
Confidence 46666666666554
No 454
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.97 E-value=1.4e+02 Score=25.33 Aligned_cols=185 Identities=12% Similarity=0.029 Sum_probs=77.6
Q ss_pred HHHHHHHhccChhHHHHHHhhcccCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 022531 16 TRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 94 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 94 (295)
+.+...++.|+.+-+.-+++.-.... .+....+ .+...+..|+.+.+..+++.-....-..+.. -.+.+...+..|+
T Consensus 37 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~~ 114 (413)
T PHA02875 37 SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVKAVEELLDLGKFADDVFYKD-GMTPLHLATILKK 114 (413)
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCHHHHHHHHHcCCcccccccCC-CCCHHHHHHHhCC
Confidence 34555566777766655554322110 1112222 3444456677666555554221110000111 1233334445555
Q ss_pred HHHHHHHHHHHHhCCCCCChHh--HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHhcCchhhH
Q 022531 95 VEKVALVVEEIKRKNVVPDIFT--YNLWISSCAATLNIDQVKKFLDEMSCDSGGSD---DWVKYVNLVNIYITASHLVNA 169 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 169 (295)
.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..+++ . |..+ +..-.+ .+...+..|+.+-+
T Consensus 115 ~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----~-g~~~~~~d~~g~T-pL~~A~~~g~~eiv 184 (413)
T PHA02875 115 LD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID----H-KACLDIEDCCGCT-PLIIAMAKGDIAIC 184 (413)
T ss_pred HH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----c-CCCCCCCCCCCCC-HHHHHHHcCCHHHH
Confidence 43 4444455565554321 1123334445666654444432 2 2222 122222 23334445555433
Q ss_pred HHHHHHHHHHhcCCCcccc---HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH
Q 022531 170 ESSTLVEAEKSITQRQWIT---YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 221 (295)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 221 (295)
.. +.+.|..++... ..+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 185 ~~-----Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 185 KM-----LLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HH-----HHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 33 445555554322 123333334455543 33444456666653
No 455
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=53.90 E-value=34 Score=30.55 Aligned_cols=167 Identities=16% Similarity=0.103 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK--TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT 87 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 87 (295)
+...|..-+..+..+++.. ....+.+..+-| +...-..++..|.+.|-.+.|.++.+.+-.+-+ ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 88 LYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
.+.+.|+...+-.+-+.+.+.....+......+++......-....+..+....+-.....+ |++.
T Consensus 447 ~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~--------------~~~~ 512 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYELYDE--------------GDFR 512 (566)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhh--------------hhHH
Q ss_pred hHHHHHHHHHHHhcCCCccccHHHHHHH
Q 022531 168 NAESSTLVEAEKSITQRQWITYDFLIIL 195 (295)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~~li~~ 195 (295)
+|.+ .+-.+......|...-...|.++
T Consensus 513 ~Aa~-~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 513 EAAS-LLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ----------------------------
T ss_pred HHHH-HHHHHHCCCCCcHHHHHHHHHHH
No 456
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=53.34 E-value=1.2e+02 Score=24.52 Aligned_cols=147 Identities=8% Similarity=-0.084 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhCCC----CCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHH
Q 022531 95 VEKVALVVEEIKRKNV----VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 170 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (295)
.++|.+.|++....+. ..+......++....+.|..+.-..+++..... ++...-..++.+.+...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~----~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS----TSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT----STHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc----CCHHHHHHHHHhhhccCCHHHHH
Confidence 4566666766665321 234444555566666666655544444444432 34555566677776666666666
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHhcCC--HHHHHHHHHH----HHhccCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 022531 171 SSTLVEAEKSITQRQWITYDFLIILYAGLGN--KDKIDQIWKS----LRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 244 (295)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~----m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 244 (295)
+ ++.........++.. ...++.++...+. .+.+.+++.. +.+ ....+......++..+...-.-++-.+-+
T Consensus 222 ~-~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 298 (324)
T PF11838_consen 222 R-LLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIK-KFGTNSSALSRVIKSFAGNFSTEEQLDEL 298 (324)
T ss_dssp H-HHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHC-HC-TTSHCCHHHHHCCCTT--SHHHHHHH
T ss_pred H-HHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHhccCCCHHHHHHH
Confidence 6 666555532122222 2333333332222 2445444432 222 22333334445555544433334444444
Q ss_pred HHHh
Q 022531 245 DQWK 248 (295)
Q Consensus 245 ~~~~ 248 (295)
+++.
T Consensus 299 ~~f~ 302 (324)
T PF11838_consen 299 EEFF 302 (324)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 457
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=53.20 E-value=1.3e+02 Score=24.85 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=8.9
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 022531 196 YAGLGNKDKIDQIWKSLRM 214 (295)
Q Consensus 196 ~~~~g~~~~a~~~~~~m~~ 214 (295)
+.+.|+.++|..-|++...
T Consensus 375 L~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 375 LARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 3444555555555544433
No 458
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=52.87 E-value=37 Score=22.60 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 93 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
+..-.|.++++++.+.+..++..|..-.++.+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333444455555544444444444333444444443
No 459
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.73 E-value=1.4e+02 Score=25.15 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=41.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChH--hHHHHHHHHH--ccCCHHHHHHHHHHHhhc
Q 022531 88 LYMSVGQVEKVALVVEEIKRKNVVPDIF--TYNLWISSCA--ATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 143 (295)
.+.+.+++..|.++|+++.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455889999999999999987 555554 3444555543 567889999999987764
No 460
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=52.38 E-value=98 Score=25.01 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhcCC
Q 022531 274 EKANEFHMLLLQKNC 288 (295)
Q Consensus 274 ~~a~~~~~~m~~~g~ 288 (295)
+.+..+..-|...|.
T Consensus 221 ~~~r~v~s~M~TcGm 235 (300)
T TIGR03814 221 EVARRINALMLTCGL 235 (300)
T ss_pred HHHHHHHHHHHHcCC
Confidence 345555555555443
No 461
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.33 E-value=1.1e+02 Score=23.87 Aligned_cols=99 Identities=11% Similarity=-0.100 Sum_probs=62.1
Q ss_pred hccChhHHHHHHhhcccCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 022531 23 KVFGIHSGERYFEGLPLSAKTS-ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL-MYNEMMTLYMSVGQVEKVAL 100 (295)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~ 100 (295)
...+++.|...+.......|+. .-|..-+.++.+..+++.+..=-.+.++. .||.. ..-.+..+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3455777777777766666755 45566677777777777777666666554 35543 34455566677778888888
Q ss_pred HHHHHHh----CCCCCChHhHHHHHHH
Q 022531 101 VVEEIKR----KNVVPDIFTYNLWISS 123 (295)
Q Consensus 101 ~~~~m~~----~~~~p~~~~~~~li~~ 123 (295)
.+++... ..+.|-......|..+
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 8877633 3344444455555554
No 462
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=52.23 E-value=1.3e+02 Score=24.51 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=13.3
Q ss_pred ccHHHHHHHHHhcCCHHHH
Q 022531 187 ITYDFLIILYAGLGNKDKI 205 (295)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a 205 (295)
.+|.-|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 4677777777777776644
No 463
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.91 E-value=1.3e+02 Score=24.68 Aligned_cols=164 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV 95 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 95 (295)
+|+..-+.++..+-++.-....+..| -...|-.|..- ...-+.+|.++|++..+.+ ..+|+ ++.+.
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~----e~~yr-------~sqq~ 256 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAG----ETIYR-------QSQQC 256 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH----HHHHh-------hHHHH
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHH
Q 022531 96 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV 175 (295)
Q Consensus 96 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (295)
..--...+.+.+.+...-...-.-|.-+..+.|+..+|.+.|+++.+......-..+-..++.++....-+.+...++..
T Consensus 257 qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 257 QHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred hhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHhcCCCccccHHHHH
Q 022531 176 EAEKSITQRQWITYDFLI 193 (295)
Q Consensus 176 ~~~~~~~~~~~~~~~~li 193 (295)
.-.-..++.-...|++-+
T Consensus 337 YDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 337 YDDISLPKSAAICYTAAL 354 (556)
T ss_pred hccccCcchHHHHHHHHH
No 464
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=51.86 E-value=57 Score=22.61 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC
Q 022531 254 DFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290 (295)
Q Consensus 254 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 290 (295)
.+|.+.. .++--+...|+++.|+++.+.+++.|...
T Consensus 46 ~qd~Vl~-~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~ 81 (132)
T PF05944_consen 46 AQDDVLM-TVMVWLFDVGDFDGALDIAEYAIEHGLPM 81 (132)
T ss_pred CcCchHH-hhHhhhhcccCHHHHHHHHHHHHHcCCCc
Confidence 3454433 34556889999999999999999998754
No 465
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=51.82 E-value=59 Score=20.55 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 100 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 100 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
++|+-....|+..|...|..+++...-.=-++...++++.|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555555566666666666666555555555555555555544
No 466
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=51.78 E-value=68 Score=24.40 Aligned_cols=83 Identities=10% Similarity=0.102 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhccCC-------CCHHhHHHHHHHHHhcC---------ChHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 022531 202 KDKIDQIWKSLRMTKQK-------MTSRNYICILSSYLMLG---------HLKEVGEIIDQWKQSATSDFDISACNRLLG 265 (295)
Q Consensus 202 ~~~a~~~~~~m~~~~~~-------~~~~~~~~li~~~~~~~---------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 265 (295)
.+.|+.++..|--+.++ -...-|..+..+|++.| +.+.-.++++...+.|..+-=...|.++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 45666666665433221 12234666777777766 456666777777776655444566888887
Q ss_pred HHHccCChHHHHHHHHHHH
Q 022531 266 AFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 266 ~~~~~g~~~~a~~~~~~m~ 284 (295)
--.-.-+.++..+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 6666667888888887664
No 467
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.25 E-value=1.7e+02 Score=25.61 Aligned_cols=151 Identities=10% Similarity=0.047 Sum_probs=88.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCCC--h-----HhHHHHHHH-HHccCCHHHHHHHHHHHhhcCCCCCCHHH--HHHH
Q 022531 88 LYMSVGQVEKVALVVEEIKRKN-VVPD--I-----FTYNLWISS-CAATLNIDQVKKFLDEMSCDSGGSDDWVK--YVNL 156 (295)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~~-~~p~--~-----~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l 156 (295)
+-.-.|++.+|++-..+|.+-- -.|. . .....++.. |...+.++.|..-|....+. -...+..+ -..+
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNL 410 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhH
Confidence 3345799999999999987631 1233 1 112233333 45678899999988887664 22333332 2356
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHH--------HHH--HHhcCCHHHHHHHHHHHHhccCCCCHHhH--
Q 022531 157 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL--------IIL--YAGLGNKDKIDQIWKSLRMTKQKMTSRNY-- 224 (295)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------i~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-- 224 (295)
...|.+.|+.+.-.+ +.+....++..+++.- +.+ ....+++.+|.+++.+-.+.. |..-+
T Consensus 411 Ai~YL~~~~~ed~y~-----~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma---naed~~r 482 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYK-----ALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA---NAEDLNR 482 (629)
T ss_pred HHHHHHhccHHHHHH-----HHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---chhhHHH
Confidence 677888888776666 3333444445444321 111 136799999999998765432 22222
Q ss_pred ------HHHHHHHHhcCChHHHHHHHHHH
Q 022531 225 ------ICILSSYLMLGHLKEVGEIIDQW 247 (295)
Q Consensus 225 ------~~li~~~~~~~~~~~A~~~~~~~ 247 (295)
..|-..+...|+..++.+.+.-.
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence 22334455677777777766543
No 468
>PRK12357 glutaminase; Reviewed
Probab=51.07 E-value=1.4e+02 Score=24.52 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=7.1
Q ss_pred CCCCChHhHHHHH
Q 022531 109 NVVPDIFTYNLWI 121 (295)
Q Consensus 109 ~~~p~~~~~~~li 121 (295)
|..|+...||+++
T Consensus 97 G~EPSG~~FNSi~ 109 (326)
T PRK12357 97 DVEPTGDAFNSII 109 (326)
T ss_pred CCCCCCCCcchhh
Confidence 4455555555554
No 469
>PRK12798 chemotaxis protein; Reviewed
Probab=50.80 E-value=1.6e+02 Score=25.13 Aligned_cols=226 Identities=12% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH-HHccCCHHHHHHHHHH-Hhh
Q 022531 65 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS-CAATLNIDQVKKFLDE-MSC 142 (295)
Q Consensus 65 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~-~~~ 142 (295)
++++.+...+..|+...--.-.-.-.-.|+..++.+.+..+.....++....|-.|+.+ .....++.+|+++|++ ...
T Consensus 98 ~vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl 177 (421)
T PRK12798 98 ATLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL 177 (421)
T ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHH---HHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 022531 143 DSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF---LIILYAGLGNKDKIDQIWKSLRMTKQKM 219 (295)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~~~ 219 (295)
.+|.-.......--+-.....|+.++... +-..-...... ++...+. +..++.+.++-..-..+-+.+....-.-
T Consensus 178 aPGTLvEEAALRRsi~la~~~g~~~rf~~-la~~Y~rRF~~-S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~ 255 (421)
T PRK12798 178 APGTLVEEAALRRSLFIAAQLGDADKFEA-LARNYLRRFRH-SPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPER 255 (421)
T ss_pred CCchHHHHHHHHHhhHHHHhcCcHHHHHH-HHHHHHHHhcc-CchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchh
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHc--cCChHHHHHHHHHHHhcCCCCCC
Q 022531 220 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD--VGLTEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~g~~p~~ 292 (295)
-...|..+.+.-...|+.+.|...-.+...-.....-...-..|-.+... ..+++.+.+-+..+-...+.|..
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhh
No 470
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=50.71 E-value=1.6e+02 Score=25.14 Aligned_cols=59 Identities=8% Similarity=0.028 Sum_probs=35.7
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022531 48 TALLHLYAGAKWTEKAEELFERVKQS--NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106 (295)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 106 (295)
--|++.+.-.|+.....+.++.|+.. |-.|.-.+-.-+.-+|.-.|++.+|.+.|-..+
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777766666677666543 223322222345566777778888888776654
No 471
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=50.69 E-value=1.8e+02 Score=25.90 Aligned_cols=185 Identities=13% Similarity=0.034 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChHhHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV--PDIFTYNLW 120 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l 120 (295)
+..+|+.-+..-.+.|+.+.+.-+|++..-.- ..=...|--.+.-....|+.+-|-.++....+--++ |....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 57789999999999999999999999876431 122455666666666679999888888766654332 333333333
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHH---HHHHHHHHHhcCCCccccHHHHHHHH-
Q 022531 121 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE---SSTLVEAEKSITQRQWITYDFLIILY- 196 (295)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~li~~~- 196 (295)
+ +-..|+++.|..+++.+... .+.-..+-..-+....+.|..+.+. + ++........ +..+...+..-+
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e--~pg~v~~~l~~~~~e~r~~~~~~~~~~~~-l~s~~~~~~~--~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE--YPGLVEVVLRKINWERRKGNLEDANYKNE-LYSSIYEGKE--NNGILEKLYVKFA 447 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh--CCchhhhHHHHHhHHHHhcchhhhhHHHH-HHHHhccccc--CcchhHHHHHHHH
Confidence 3 34568999999999999985 3333334444556677888888887 3 3332222222 222333333333
Q ss_pred ----HhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCC
Q 022531 197 ----AGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 236 (295)
Q Consensus 197 ----~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 236 (295)
.-.++.+.|..++.++.+. ..++...|..+++.....+.
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 3368889999999988776 35666777777777666553
No 472
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.50 E-value=15 Score=29.87 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=22.1
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 57 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 107 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 107 (295)
.|.++.|++.|...+... +|....|..-.+.+.+.+.+..|++=+....+
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e 176 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE 176 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc
Confidence 344445555544444443 33333444444444444444444444443333
No 473
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=50.47 E-value=1.4e+02 Score=24.62 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 022531 60 TEKAEELFERVKQSNLSFNA----LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 125 (295)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 125 (295)
-++++.++++++.. .|+. --|-.+.+.....|.++.++.+|++....|-.|-...-..+++.+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34566666655554 2333 2456666666666666677777777666666666555555555543
No 474
>PHA03100 ankyrin repeat protein; Provisional
Probab=49.94 E-value=1.7e+02 Score=25.31 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=9.1
Q ss_pred HHHHHHhccChhHHHHHHh
Q 022531 17 RIDLMTKVFGIHSGERYFE 35 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~ 35 (295)
.+...++.|+.+-+..+++
T Consensus 38 ~L~~A~~~~~~~ivk~Ll~ 56 (480)
T PHA03100 38 PLYLAKEARNIDVVKILLD 56 (480)
T ss_pred hhhhhhccCCHHHHHHHHH
Confidence 3344445555555544444
No 475
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=49.92 E-value=51 Score=19.25 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=20.4
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHH
Q 022531 56 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY-----MSVGQVEKVALV 101 (295)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-----~~~~~~~~a~~~ 101 (295)
..|++=+|.++++++=...-.|....+..||... .+.|+...|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3555555555555554322122334444444432 244555555443
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=49.21 E-value=60 Score=21.54 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=30.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChH
Q 022531 193 IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK 238 (295)
Q Consensus 193 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 238 (295)
+......+..-.|.++++.+.+.+..++..|.-..++.+...|-+.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 3444444555667788888877776677777666777777777544
No 477
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=48.84 E-value=31 Score=23.19 Aligned_cols=44 Identities=7% Similarity=0.019 Sum_probs=19.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
++......+.+-.|.++++.+.+.+...+..|..--++.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 33444444444455555555555544444444333344444433
No 478
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.83 E-value=1.5e+02 Score=24.28 Aligned_cols=98 Identities=6% Similarity=0.071 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 76 SFNALMYNEMMTLYMSV------------GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 76 ~p~~~~~~~li~~~~~~------------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
|-|+.+|-.++..--.. .-.+.-+.++++..+.+. -+.......|..+.+..+.++..+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44677777776642221 113556677777777633 35666777788888888888888888888874
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCchhhHHHHHHHHH
Q 022531 144 SGGSDDWVKYVNLVNIYIT---ASHLVNAESSTLVEA 177 (295)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 177 (295)
.+-+...|...+..... .-.++.... +|.+.
T Consensus 95 --~~~~~~LW~~yL~~~q~~~~~f~v~~~~~-~y~~~ 128 (321)
T PF08424_consen 95 --NPGSPELWREYLDFRQSNFASFTVSDVRD-VYEKC 128 (321)
T ss_pred --CCCChHHHHHHHHHHHHHhccCcHHHHHH-HHHHH
Confidence 23456666666665443 223445555 44443
No 479
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=48.69 E-value=1.1e+02 Score=23.36 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=20.4
Q ss_pred hhHHHHHHhhcccC----C-----CCHHHHHHHHHHHHccC
Q 022531 27 IHSGERYFEGLPLS----A-----KTSETYTALLHLYAGAK 58 (295)
Q Consensus 27 ~~~A~~~~~~~~~~----~-----p~~~~~~~li~~~~~~~ 58 (295)
.+.|..++..|-.. . ....-|..+..+|++.|
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g 177 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHG 177 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcC
Confidence 56677777776544 1 24556777777777766
No 480
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=48.38 E-value=93 Score=21.81 Aligned_cols=68 Identities=4% Similarity=-0.004 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 76 SFNALMYNEMMTLYMSVGQ---VEKVALVVEEIKRKN-VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 76 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.++..+--.+..++.++.+ ..+.+.+++++.+.. ..-.-.....|.-++.+.++++.++.+.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3455565666677776653 556777888877622 1112233344555677888888888888877764
No 481
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=48.38 E-value=2.3e+02 Score=26.29 Aligned_cols=16 Identities=6% Similarity=-0.018 Sum_probs=10.6
Q ss_pred cCCHHHHHHHHHHHHh
Q 022531 199 LGNKDKIDQIWKSLRM 214 (295)
Q Consensus 199 ~g~~~~a~~~~~~m~~ 214 (295)
.|++..++.+++++..
T Consensus 211 ~GslRdAlnLLDqaia 226 (709)
T PRK08691 211 AGSMRDALSLLDQAIA 226 (709)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5777777777766544
No 482
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=47.60 E-value=1.4e+02 Score=23.70 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=10.0
Q ss_pred ChHHHHHHHHHHhhhc
Q 022531 236 HLKEVGEIIDQWKQSA 251 (295)
Q Consensus 236 ~~~~A~~~~~~~~~~~ 251 (295)
+...|...+......+
T Consensus 252 ~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 252 DKKQALEWLQKACELG 267 (292)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 6666666666665544
No 483
>PRK09857 putative transposase; Provisional
Probab=47.51 E-value=1.5e+02 Score=23.93 Aligned_cols=59 Identities=3% Similarity=-0.009 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 84 EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 84 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.+++...+.++.++..++++.+.+. ..+.....-++..-+.+.|.-+++.++..+|...
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~ 269 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLES 269 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3443334444444444444444333 1112222223333333334333444444444443
No 484
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.35 E-value=2.4e+02 Score=26.28 Aligned_cols=170 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRKNVVP---DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 162 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (295)
|.-+.+.+.+++|+..-+..... .| -.......|..+.-.|++++|-...-.|... +..-|.-.+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhcc
Q ss_pred cCchhhHHHHHHHHHHHhcCC-CccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHH
Q 022531 163 ASHLVNAESSTLVEAEKSITQ-RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG 241 (295)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 241 (295)
.++...... ..-.++. .+...|..++..+.. .....+++...+. ++....-..++.+--..-+-....
T Consensus 436 ~~~l~~Ia~-----~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~W--p~~Lys~l~iisa~~~q~~q~Se~ 504 (846)
T KOG2066|consen 436 LDQLTDIAP-----YLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEW--PGHLYSVLTIISATEPQIKQNSES 504 (846)
T ss_pred ccccchhhc-----cCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhC--ChhhhhhhHHHhhcchHHHhhccc
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 022531 242 EIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 288 (295)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 288 (295)
..+.+. |+..|...+++..|+.++-...+..+
T Consensus 505 ~~L~e~---------------La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 505 TALLEV---------------LAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hhHHHH---------------HHHHHHHccChHHHHHHHHhccChHH
No 485
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=47.09 E-value=92 Score=21.38 Aligned_cols=43 Identities=14% Similarity=0.022 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 022531 239 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM 281 (295)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 281 (295)
+..++|..|..+++-..-...|......+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777766554555566666667777777777777765
No 486
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=47.02 E-value=30 Score=29.81 Aligned_cols=47 Identities=21% Similarity=0.146 Sum_probs=33.9
Q ss_pred cCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCC
Q 022531 234 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 294 (295)
Q Consensus 234 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 294 (295)
..++++|++..++.++.+. |-.. |-.-.|.++|.++.++|+.||..|
T Consensus 207 ~~~ldeal~~~~~a~~~~~--~~SI------------g~~GNaadv~~~l~~r~i~pDlvt 253 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGK--PISI------------GLLGNAAEVLPELLKRGVVPDVVT 253 (545)
T ss_pred cCCHHHHHHHHHHHHHcCC--ceEE------------EeeccHHHHHHHHHHcCCCCCCcC
Confidence 4578888888888877653 3222 334457888999999999998876
No 487
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=46.82 E-value=94 Score=21.38 Aligned_cols=111 Identities=10% Similarity=0.086 Sum_probs=58.8
Q ss_pred ChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CC
Q 022531 26 GIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV-----------GQ 94 (295)
Q Consensus 26 ~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------~~ 94 (295)
++.-|.+++..+...+ -+...++.+....-.-.+.++..++....-.| ....+..|..+.+. ..
T Consensus 4 Np~IA~~~l~~l~~s~----~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p-~efl~~yI~~cI~~ce~~kd~~~q~R~ 78 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP----NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLP-QEFLHMYISNCIKSCESIKDKYMQNRL 78 (126)
T ss_pred cHHHHHHHHHHHcCCc----hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCc-HHHHHHHHHHHHHHHHhhcccccccch
Confidence 3444555554444321 24445555555555556666666666554333 33333333333221 12
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 022531 95 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 141 (295)
..-.-.+++.+.+.++.-....+..+=..|.+-.+..+|-.+|+-++
T Consensus 79 VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 79 VRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred hhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 23344455667777765444555555556667777888888877654
No 488
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.97 E-value=2.4e+02 Score=25.78 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=7.6
Q ss_pred cCCHHHHHHHHHHH
Q 022531 199 LGNKDKIDQIWKSL 212 (295)
Q Consensus 199 ~g~~~~a~~~~~~m 212 (295)
.|+...++.+++++
T Consensus 216 ~GslR~al~lLdq~ 229 (618)
T PRK14951 216 RGSMRDALSLTDQA 229 (618)
T ss_pred CCCHHHHHHHHHHH
Confidence 45555555555544
No 489
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=45.73 E-value=23 Score=20.83 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHhhc
Q 022531 129 NIDQVKKFLDEMSCD 143 (295)
Q Consensus 129 ~~~~a~~~~~~~~~~ 143 (295)
+++.|...|.++...
T Consensus 40 d~~~Al~~F~~lk~~ 54 (63)
T smart00804 40 DYERALKNFTELKSE 54 (63)
T ss_pred CHHHHHHHHHHHHhc
Confidence 444444444444443
No 490
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.21 E-value=2.2e+02 Score=25.22 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=8.7
Q ss_pred cCCHHHHHHHHHHHH
Q 022531 199 LGNKDKIDQIWKSLR 213 (295)
Q Consensus 199 ~g~~~~a~~~~~~m~ 213 (295)
.|+...|..+++++.
T Consensus 211 ~GslR~al~lLdq~i 225 (509)
T PRK14958 211 NGSVRDALSLLDQSI 225 (509)
T ss_pred CCcHHHHHHHHHHHH
Confidence 466666666665544
No 491
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.19 E-value=56 Score=18.37 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=18.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCHHh
Q 022531 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 223 (295)
Q Consensus 192 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 223 (295)
+..++.+.|++++|.+..+.+.+. +|+-.-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 445667778888888777777664 555443
No 492
>PRK05414 urocanate hydratase; Provisional
Probab=44.79 E-value=32 Score=29.75 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=33.4
Q ss_pred cCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCC
Q 022531 234 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 294 (295)
Q Consensus 234 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 294 (295)
..++++|++..++.++.+ +|-.. |-.-.|.++|.++.++|+.||..|
T Consensus 216 ~~~Ldeal~~~~~a~~~~--~~~SI------------g~~GNaadv~~~l~~~~i~pDlvt 262 (556)
T PRK05414 216 ADDLDEALALAEEAKAAG--EPLSI------------GLLGNAADVLPELVRRGIRPDLVT 262 (556)
T ss_pred cCCHHHHHHHHHHHHHcC--CceEE------------EEeccHHHHHHHHHHcCCCCCccC
Confidence 457788888888877765 23222 334457788889999999998776
No 493
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.34 E-value=1.5e+02 Score=27.52 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=75.7
Q ss_pred HHHHHHHhcCCCccc---cHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHH----------hHHHHHHHHHhcCChHH
Q 022531 173 TLVEAEKSITQRQWI---TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR----------NYICILSSYLMLGHLKE 239 (295)
Q Consensus 173 ~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~li~~~~~~~~~~~ 239 (295)
.+.+|......|++. +...|+..|....+++..+++.+.++.. ||.. .|...+.---+.||-++
T Consensus 185 ~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 185 YLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 677787777777664 3455666777788899999998888763 4321 23334444456778888
Q ss_pred HHHHHHHHhh-hcCCCCCHHHH-----HH--HHHHHHccCChHHHHHHHHHHHhcCCCCCCCCC
Q 022531 240 VGEIIDQWKQ-SATSDFDISAC-----NR--LLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 295 (295)
Q Consensus 240 A~~~~~~~~~-~~~~~~~~~~~-----~~--l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 295 (295)
|+...-.+.+ .|...||.... -- +-+.|...+..+.|.+.|++.-+ +.|+..+|
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sG 323 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSG 323 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhcc
Confidence 8887766654 44455766432 11 12234456677788888888776 66766554
No 494
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.28 E-value=2.2e+02 Score=24.98 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=15.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCCC
Q 022531 260 CNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290 (295)
Q Consensus 260 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 290 (295)
+..++.+....+....|+.++++|.+.|..|
T Consensus 251 ~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 251 LTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 3344444444334445555555555555544
No 495
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.21 E-value=2.7e+02 Score=26.00 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhC
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQS 73 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (295)
..+...++-.|-...+++...++.+.++..
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i 230 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI 230 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC
Confidence 445555666666666666666666666553
No 496
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.13 E-value=2.3e+02 Score=25.09 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=10.1
Q ss_pred cCCHHHHHHHHHHHHhc
Q 022531 199 LGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 199 ~g~~~~a~~~~~~m~~~ 215 (295)
.|++..+...++.+...
T Consensus 208 ~GdlR~aln~Lekl~~~ 224 (504)
T PRK14963 208 DGAMRDAESLLERLLAL 224 (504)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 46666666666665433
No 497
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.10 E-value=2.5e+02 Score=25.59 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=10.2
Q ss_pred cCChHHHHHHHHHHhhhc
Q 022531 234 LGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 234 ~~~~~~A~~~~~~~~~~~ 251 (295)
.++..+|+.+++.+...+
T Consensus 260 ~~~~~~al~ll~~Ll~~g 277 (614)
T PRK14971 260 AGKVSDSLLLFDEILNKG 277 (614)
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 345666666666665544
No 498
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=43.78 E-value=61 Score=21.77 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=25.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCCh
Q 022531 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 237 (295)
Q Consensus 192 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 237 (295)
++......+..-.|.++++.|.+.+...+..|.-.-+..+...|-+
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 3444444444566777777777666666666655555666655543
No 499
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=42.90 E-value=84 Score=19.74 Aligned_cols=33 Identities=6% Similarity=0.182 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC
Q 022531 93 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 129 (295)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 129 (295)
.+.+++.++++.+...| ..+|..+..++-..|.
T Consensus 44 tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRG----KQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCc
Confidence 33455555555554442 2344444444444443
No 500
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=42.45 E-value=89 Score=19.87 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 80 LMYNEMMTLYMSVGQVEKVALVVEEIKR 107 (295)
Q Consensus 80 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 107 (295)
..--.+...+...|++++|++.+-++.+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
Done!