Query 022531
Match_columns 295
No_of_seqs 424 out of 1159
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 07:00:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 5.1E-37 1.7E-41 258.8 23.6 205 28-234 7-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 8.4E-37 2.9E-41 257.4 23.1 207 61-270 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 3.5E-29 1.2E-33 217.5 32.1 275 8-292 302-583 (597)
4 2xpi_A Anaphase-promoting comp 100.0 3.5E-29 1.2E-33 217.5 26.4 276 6-291 195-513 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.3E-24 1.8E-28 175.5 32.5 272 10-291 66-371 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4.2E-24 1.4E-28 176.1 31.4 267 10-285 32-333 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 7.4E-23 2.5E-27 171.7 31.4 267 10-285 25-323 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 9.8E-23 3.4E-27 170.9 31.9 272 9-292 58-362 (450)
9 3hym_B Cell division cycle pro 99.9 5.8E-22 2E-26 159.3 28.6 276 6-291 17-302 (330)
10 1fch_A Peroxisomal targeting s 99.9 1.4E-21 4.7E-26 159.7 27.2 269 10-283 63-356 (368)
11 4eqf_A PEX5-related protein; a 99.9 1E-21 3.6E-26 160.4 24.9 267 10-282 64-352 (365)
12 3ieg_A DNAJ homolog subfamily 99.9 6.8E-20 2.3E-24 148.7 33.3 270 10-291 36-338 (359)
13 3cv0_A Peroxisome targeting si 99.9 4E-21 1.4E-25 154.2 24.6 267 10-284 20-313 (327)
14 3ieg_A DNAJ homolog subfamily 99.9 6.8E-20 2.3E-24 148.7 30.2 267 10-286 2-301 (359)
15 2gw1_A Mitochondrial precursor 99.9 6.7E-20 2.3E-24 156.1 27.7 269 8-285 36-400 (514)
16 3hym_B Cell division cycle pro 99.9 2.2E-19 7.5E-24 144.2 29.1 257 10-274 55-322 (330)
17 3spa_A Mtrpol, DNA-directed RN 99.9 1.8E-22 6.1E-27 176.5 11.4 161 44-211 127-306 (1134)
18 2gw1_A Mitochondrial precursor 99.9 9.1E-20 3.1E-24 155.3 27.9 269 11-286 6-367 (514)
19 3spa_A Mtrpol, DNA-directed RN 99.9 3.1E-23 1.1E-27 181.2 5.4 149 10-164 126-286 (1134)
20 3mkr_A Coatomer subunit epsilo 99.9 4E-19 1.4E-23 140.3 28.2 253 19-291 7-267 (291)
21 1fch_A Peroxisomal targeting s 99.9 1.9E-19 6.7E-24 146.9 26.8 259 20-286 34-314 (368)
22 4eqf_A PEX5-related protein; a 99.9 4.2E-20 1.4E-24 150.8 22.4 236 43-286 64-310 (365)
23 3fp2_A TPR repeat-containing p 99.9 8.8E-19 3E-23 150.1 28.7 265 11-286 25-407 (537)
24 3mkr_A Coatomer subunit epsilo 99.8 2.7E-17 9.1E-22 129.9 28.8 246 13-278 36-286 (291)
25 3fp2_A TPR repeat-containing p 99.8 1.1E-17 3.9E-22 143.2 27.6 269 9-286 57-457 (537)
26 3cv0_A Peroxisome targeting si 99.8 1.2E-17 4.2E-22 133.8 24.2 235 43-286 20-269 (327)
27 3uq3_A Heat shock protein STI1 99.8 1.7E-17 5.9E-22 128.3 24.1 224 45-285 6-235 (258)
28 1b89_A Protein (clathrin heavy 99.8 1.9E-19 6.4E-24 146.3 10.8 221 23-285 15-235 (449)
29 2pl2_A Hypothetical conserved 99.8 3.3E-17 1.1E-21 123.9 22.1 199 77-284 3-212 (217)
30 2pl2_A Hypothetical conserved 99.8 1.8E-17 6E-22 125.4 19.9 207 9-246 3-210 (217)
31 3uq3_A Heat shock protein STI1 99.8 4.4E-17 1.5E-21 126.0 22.6 227 11-251 5-237 (258)
32 3u4t_A TPR repeat-containing p 99.8 8.3E-17 2.8E-21 125.7 23.4 248 11-265 3-263 (272)
33 3u4t_A TPR repeat-containing p 99.8 9.5E-17 3.3E-21 125.4 23.2 241 44-292 3-254 (272)
34 2vq2_A PILW, putative fimbrial 99.8 2.9E-16 9.9E-21 118.8 24.4 204 43-250 7-211 (225)
35 1b89_A Protein (clathrin heavy 99.8 1.4E-18 4.7E-23 141.2 11.3 224 9-269 30-253 (449)
36 2ho1_A Type 4 fimbrial biogene 99.8 3.6E-16 1.2E-20 120.7 24.4 203 44-251 37-239 (252)
37 1ouv_A Conserved hypothetical 99.8 3.9E-15 1.3E-19 116.5 30.5 222 11-250 6-251 (273)
38 2vq2_A PILW, putative fimbrial 99.8 1.5E-15 5.1E-20 114.9 26.8 202 10-215 7-211 (225)
39 2h6f_A Protein farnesyltransfe 99.8 2.5E-16 8.7E-21 128.5 23.5 249 11-269 97-365 (382)
40 2ho1_A Type 4 fimbrial biogene 99.8 1.2E-15 4E-20 117.8 25.8 199 80-285 38-237 (252)
41 1xnf_A Lipoprotein NLPI; TPR, 99.8 9.5E-17 3.2E-21 125.5 19.5 246 22-280 16-269 (275)
42 2q7f_A YRRB protein; TPR, prot 99.8 1.4E-16 4.9E-21 122.1 19.1 212 43-263 22-233 (243)
43 1ouv_A Conserved hypothetical 99.8 8.6E-15 2.9E-19 114.5 29.6 224 43-287 5-252 (273)
44 2q7f_A YRRB protein; TPR, prot 99.8 2.9E-16 9.7E-21 120.5 20.5 202 8-215 20-222 (243)
45 4a1s_A PINS, partner of inscut 99.7 1.5E-16 5E-21 131.8 19.3 273 12-285 49-371 (411)
46 3sf4_A G-protein-signaling mod 99.7 4.8E-16 1.6E-20 128.2 22.0 278 7-285 5-335 (406)
47 3ro2_A PINS homolog, G-protein 99.7 4E-16 1.4E-20 125.1 20.0 274 12-286 6-332 (338)
48 2h6f_A Protein farnesyltransfe 99.7 2.4E-15 8.4E-20 122.7 23.4 233 43-285 96-347 (382)
49 1xnf_A Lipoprotein NLPI; TPR, 99.7 7.8E-15 2.7E-19 114.5 22.5 224 55-286 16-244 (275)
50 2ond_A Cleavage stimulation fa 99.7 6.3E-14 2.2E-18 111.6 27.9 235 11-251 8-271 (308)
51 3nf1_A KLC 1, kinesin light ch 99.7 2.4E-16 8.1E-21 125.4 13.1 240 43-285 26-306 (311)
52 2xm6_A Protein corresponding t 99.7 1.1E-12 3.7E-17 111.3 34.8 256 10-287 38-326 (490)
53 2xm6_A Protein corresponding t 99.7 9.8E-13 3.3E-17 111.5 34.3 258 11-287 75-397 (490)
54 2ond_A Cleavage stimulation fa 99.7 2.5E-13 8.6E-18 108.1 27.9 237 43-286 7-270 (308)
55 4abn_A Tetratricopeptide repea 99.7 6.8E-15 2.3E-19 124.1 19.6 207 29-242 86-313 (474)
56 4g1t_A Interferon-induced prot 99.7 1.2E-13 4.1E-18 116.4 26.7 200 10-215 50-276 (472)
57 3nf1_A KLC 1, kinesin light ch 99.7 2E-15 7E-20 119.9 15.0 239 10-250 26-307 (311)
58 2ooe_A Cleavage stimulation fa 99.7 9E-13 3.1E-17 112.9 32.2 149 132-286 304-454 (530)
59 4g1t_A Interferon-induced prot 99.6 6.1E-14 2.1E-18 118.2 23.3 279 11-295 136-469 (472)
60 4abn_A Tetratricopeptide repea 99.6 2.3E-14 7.9E-19 120.9 19.7 215 59-282 83-317 (474)
61 3vtx_A MAMA; tetratricopeptide 99.6 8.7E-14 3E-18 102.1 20.4 162 45-212 6-167 (184)
62 3vtx_A MAMA; tetratricopeptide 99.6 7E-14 2.4E-18 102.6 19.8 167 10-181 4-171 (184)
63 3ulq_A Response regulator aspa 99.6 1.1E-13 3.9E-18 113.5 19.3 250 32-285 85-367 (383)
64 3as5_A MAMA; tetratricopeptide 99.6 6E-13 2E-17 97.2 20.9 166 11-181 8-174 (186)
65 4a1s_A PINS, partner of inscut 99.6 9E-14 3.1E-18 115.0 17.7 240 44-285 48-331 (411)
66 3sf4_A G-protein-signaling mod 99.6 2.3E-13 7.7E-18 112.2 19.7 242 42-285 7-295 (406)
67 3ro2_A PINS homolog, G-protein 99.6 2.2E-13 7.4E-18 109.1 17.9 240 44-285 5-291 (338)
68 1hz4_A MALT regulatory protein 99.6 4.8E-12 1.6E-16 103.4 26.2 272 13-285 16-321 (373)
69 2ooe_A Cleavage stimulation fa 99.6 1.6E-11 5.4E-16 105.2 30.2 217 62-285 256-491 (530)
70 3as5_A MAMA; tetratricopeptide 99.5 2.8E-12 9.5E-17 93.6 20.0 164 80-249 9-172 (186)
71 4gyw_A UDP-N-acetylglucosamine 99.5 8.1E-13 2.8E-17 116.1 18.9 165 10-179 8-173 (723)
72 3ulq_A Response regulator aspa 99.5 8.9E-13 3.1E-17 108.2 17.9 229 17-249 109-367 (383)
73 3edt_B KLC 2, kinesin light ch 99.5 1.5E-12 5.3E-17 101.6 18.2 204 79-285 43-280 (283)
74 4gyw_A UDP-N-acetylglucosamine 99.5 1.5E-12 5.1E-17 114.5 19.6 168 41-214 5-173 (723)
75 3edt_B KLC 2, kinesin light ch 99.5 5.6E-13 1.9E-17 104.1 14.9 226 22-249 12-280 (283)
76 1xi4_A Clathrin heavy chain; a 99.5 5.7E-11 1.9E-15 108.2 28.5 204 43-284 1104-1307(1630)
77 1xi4_A Clathrin heavy chain; a 99.5 3E-11 1E-15 110.0 26.4 237 10-280 1104-1378(1630)
78 4i17_A Hypothetical protein; T 99.5 1.9E-11 6.4E-16 92.7 21.3 198 42-251 5-210 (228)
79 3q15_A PSP28, response regulat 99.5 8.9E-12 3.1E-16 102.0 20.7 234 47-285 104-364 (378)
80 1qqe_A Vesicular transport pro 99.5 5.4E-12 1.8E-16 99.6 18.5 161 52-213 45-226 (292)
81 4i17_A Hypothetical protein; T 99.5 2.1E-11 7.3E-16 92.4 19.9 201 8-223 4-215 (228)
82 3q15_A PSP28, response regulat 99.4 2.8E-11 9.7E-16 99.0 19.9 229 17-249 107-364 (378)
83 1hz4_A MALT regulatory protein 99.4 2.5E-10 8.5E-15 93.1 25.0 239 46-285 16-281 (373)
84 3e4b_A ALGK; tetratricopeptide 99.4 9.4E-12 3.2E-16 104.3 15.8 104 17-128 9-120 (452)
85 3mv2_B Coatomer subunit epsilo 99.4 6E-10 2.1E-14 87.0 22.6 147 98-248 85-238 (310)
86 2fo7_A Synthetic consensus TPR 99.4 5.5E-11 1.9E-15 81.7 15.2 126 14-141 4-130 (136)
87 3qky_A Outer membrane assembly 99.3 1.5E-10 5.2E-15 89.6 18.5 183 11-215 15-224 (261)
88 3e4b_A ALGK; tetratricopeptide 99.3 2.2E-09 7.6E-14 89.9 26.8 251 13-285 143-420 (452)
89 2fo7_A Synthetic consensus TPR 99.3 1.5E-10 5.2E-15 79.5 16.6 129 46-179 3-131 (136)
90 1qqe_A Vesicular transport pro 99.3 9.3E-11 3.2E-15 92.5 16.2 237 28-285 2-268 (292)
91 3qky_A Outer membrane assembly 99.3 1.4E-09 4.7E-14 84.2 22.3 187 43-251 14-225 (261)
92 3urz_A Uncharacterized protein 99.3 3E-10 1E-14 84.9 16.8 76 85-163 60-135 (208)
93 2pzi_A Probable serine/threoni 99.3 3.9E-10 1.3E-14 99.3 19.3 173 55-236 402-583 (681)
94 2r5s_A Uncharacterized protein 99.3 2.1E-10 7.1E-15 83.3 14.6 163 13-179 8-172 (176)
95 3mv2_B Coatomer subunit epsilo 99.3 1.2E-09 4E-14 85.4 19.4 180 63-251 85-283 (310)
96 4ga2_A E3 SUMO-protein ligase 99.3 4.1E-11 1.4E-15 84.7 10.2 141 20-164 6-148 (150)
97 2vsy_A XCC0866; transferase, g 99.3 4E-10 1.4E-14 97.3 17.9 161 24-190 2-166 (568)
98 2ifu_A Gamma-SNAP; membrane fu 99.2 1.9E-10 6.6E-15 91.3 14.6 131 116-248 78-222 (307)
99 3urz_A Uncharacterized protein 99.2 3.9E-10 1.3E-14 84.3 15.2 165 11-181 4-187 (208)
100 2pzi_A Probable serine/threoni 99.2 3.7E-10 1.3E-14 99.4 17.2 174 90-272 402-583 (681)
101 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.4E-09 1.2E-13 80.1 19.8 198 12-251 5-214 (225)
102 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.8E-09 1.3E-13 79.8 19.7 190 78-287 3-214 (225)
103 3dra_A Protein farnesyltransfe 99.2 2.1E-08 7.3E-13 78.9 24.3 234 24-264 46-300 (306)
104 3qou_A Protein YBBN; thioredox 99.2 4.7E-10 1.6E-14 88.2 14.8 165 43-213 116-282 (287)
105 3rjv_A Putative SEL1 repeat pr 99.2 2.9E-09 1E-13 79.7 18.5 175 30-216 5-198 (212)
106 3qou_A Protein YBBN; thioredox 99.2 8E-10 2.7E-14 86.9 16.1 169 112-285 115-283 (287)
107 3rjv_A Putative SEL1 repeat pr 99.2 4.6E-09 1.6E-13 78.6 19.5 177 61-251 3-198 (212)
108 2ifu_A Gamma-SNAP; membrane fu 99.2 1.1E-09 3.7E-14 87.0 16.4 201 57-284 4-222 (307)
109 4ga2_A E3 SUMO-protein ligase 99.2 2.9E-10 9.8E-15 80.3 11.0 146 50-200 3-148 (150)
110 3u3w_A Transcriptional activat 99.2 2.1E-08 7.1E-13 79.0 22.9 165 120-285 81-265 (293)
111 2r5s_A Uncharacterized protein 99.2 5.7E-10 1.9E-14 81.0 12.7 79 205-284 93-171 (176)
112 2vsy_A XCC0866; transferase, g 99.2 1.7E-09 5.9E-14 93.3 17.5 154 57-216 2-158 (568)
113 3dra_A Protein farnesyltransfe 99.2 9.8E-08 3.4E-12 75.1 25.3 224 55-285 44-286 (306)
114 1hh8_A P67PHOX, NCF-2, neutrop 99.1 3.2E-08 1.1E-12 73.8 19.6 128 13-143 8-150 (213)
115 3u3w_A Transcriptional activat 99.1 2.4E-08 8.2E-13 78.6 19.5 162 86-248 82-264 (293)
116 2c2l_A CHIP, carboxy terminus 99.1 4.7E-09 1.6E-13 82.2 14.8 95 45-141 5-99 (281)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.9E-08 9.8E-13 74.1 18.4 133 45-183 7-153 (213)
118 3gyz_A Chaperone protein IPGC; 99.1 2.3E-09 7.9E-14 75.5 10.9 124 11-143 9-133 (151)
119 4e6h_A MRNA 3'-END-processing 99.0 2.8E-08 9.7E-13 86.7 19.9 236 12-251 303-571 (679)
120 1a17_A Serine/threonine protei 99.0 1.1E-08 3.9E-13 72.9 14.2 130 44-178 13-144 (166)
121 1p5q_A FKBP52, FK506-binding p 99.0 1.9E-09 6.6E-14 86.7 10.4 151 25-179 127-293 (336)
122 3gyz_A Chaperone protein IPGC; 99.0 9.7E-09 3.3E-13 72.3 12.5 97 150-249 36-132 (151)
123 4gco_A Protein STI-1; structur 99.0 1.2E-08 4.2E-13 69.5 12.6 109 44-156 13-121 (126)
124 3gw4_A Uncharacterized protein 99.0 8.5E-09 2.9E-13 76.3 12.7 156 22-178 3-174 (203)
125 2vgx_A Chaperone SYCD; alterna 99.0 6.4E-09 2.2E-13 73.1 11.4 108 34-143 10-118 (148)
126 3q7a_A Farnesyltransferase alp 99.0 3.9E-07 1.3E-11 72.6 22.7 224 20-249 63-330 (349)
127 4e6h_A MRNA 3'-END-processing 99.0 3.8E-08 1.3E-12 85.9 18.3 217 9-231 341-584 (679)
128 1na0_A Designed protein CTPR3; 99.0 1.6E-08 5.4E-13 68.2 12.9 115 44-162 9-123 (125)
129 1a17_A Serine/threonine protei 99.0 3.8E-08 1.3E-12 70.1 15.4 96 81-180 15-110 (166)
130 2qfc_A PLCR protein; TPR, HTH, 99.0 1.2E-07 4E-12 74.7 19.4 168 80-248 76-264 (293)
131 2qfc_A PLCR protein; TPR, HTH, 99.0 1.6E-07 5.6E-12 73.8 20.2 168 44-213 75-264 (293)
132 4gco_A Protein STI-1; structur 99.0 2.1E-08 7.1E-13 68.4 13.0 95 13-108 15-110 (126)
133 1na0_A Designed protein CTPR3; 99.0 4.6E-08 1.6E-12 65.9 14.7 95 12-107 10-105 (125)
134 2lni_A Stress-induced-phosphop 99.0 2.5E-08 8.7E-13 68.1 13.4 118 43-164 15-132 (133)
135 2c2l_A CHIP, carboxy terminus 99.0 4.8E-09 1.6E-13 82.2 10.5 97 10-107 3-100 (281)
136 3q7a_A Farnesyltransferase alp 98.9 1.5E-06 5.1E-11 69.3 24.5 233 46-285 56-330 (349)
137 3gw4_A Uncharacterized protein 98.9 3.3E-08 1.1E-12 73.0 14.1 160 90-251 3-177 (203)
138 2vyi_A SGTA protein; chaperone 98.9 2.3E-08 8E-13 68.0 12.3 120 43-166 11-130 (131)
139 2e2e_A Formate-dependent nitri 98.9 1.4E-08 4.9E-13 73.5 11.7 120 22-143 21-144 (177)
140 2vyi_A SGTA protein; chaperone 98.9 5.6E-08 1.9E-12 66.0 13.9 115 12-128 13-128 (131)
141 2xcb_A PCRH, regulatory protei 98.9 4.4E-08 1.5E-12 68.2 13.0 109 33-143 6-115 (142)
142 2lni_A Stress-induced-phosphop 98.9 6E-08 2.1E-12 66.2 13.4 98 10-108 15-113 (133)
143 2fbn_A 70 kDa peptidylprolyl i 98.9 7.3E-09 2.5E-13 76.6 9.3 161 14-178 7-184 (198)
144 4f3v_A ESX-1 secretion system 98.9 1E-07 3.5E-12 73.5 15.8 186 23-215 18-237 (282)
145 1p5q_A FKBP52, FK506-binding p 98.8 1.4E-07 4.7E-12 75.8 15.5 95 187-284 197-292 (336)
146 4b4t_Q 26S proteasome regulato 98.8 3.5E-07 1.2E-11 75.9 17.9 97 188-284 137-243 (434)
147 2e2e_A Formate-dependent nitri 98.8 1.5E-07 5E-12 68.1 13.4 123 124-251 20-145 (177)
148 2uy1_A Cleavage stimulation fa 98.8 7.8E-06 2.7E-10 69.1 25.6 170 7-180 11-242 (493)
149 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 1.3E-08 4.5E-13 85.3 8.5 151 26-180 249-415 (457)
150 1elw_A TPR1-domain of HOP; HOP 98.8 2.4E-07 8.1E-12 61.6 13.3 96 45-142 5-100 (118)
151 3upv_A Heat shock protein STI1 98.8 2E-07 6.9E-12 63.2 13.1 96 45-142 5-100 (126)
152 2vgx_A Chaperone SYCD; alterna 98.8 1.2E-07 4E-12 66.6 12.1 95 152-249 23-117 (148)
153 3upv_A Heat shock protein STI1 98.8 1.4E-07 4.6E-12 64.1 12.1 97 11-108 4-101 (126)
154 3sz7_A HSC70 cochaperone (SGT) 98.8 1.8E-07 6.1E-12 66.8 13.2 99 43-143 10-108 (164)
155 1elw_A TPR1-domain of HOP; HOP 98.8 4.8E-07 1.6E-11 60.1 14.5 97 11-108 4-101 (118)
156 3dss_A Geranylgeranyl transfer 98.8 1.4E-05 4.9E-10 63.3 24.8 230 13-250 28-304 (331)
157 4gcn_A Protein STI-1; structur 98.8 2.2E-07 7.6E-12 63.3 12.4 98 45-143 9-112 (127)
158 2kck_A TPR repeat; tetratricop 98.8 3E-07 1E-11 60.5 12.5 99 43-143 5-106 (112)
159 2xcb_A PCRH, regulatory protei 98.8 1.1E-07 3.7E-12 66.2 10.6 96 12-108 19-115 (142)
160 2kck_A TPR repeat; tetratricop 98.7 4.8E-07 1.6E-11 59.5 13.2 100 185-287 5-107 (112)
161 4gcn_A Protein STI-1; structur 98.7 1.2E-07 4.2E-12 64.6 10.4 105 12-118 9-120 (127)
162 4f3v_A ESX-1 secretion system 98.7 7.5E-07 2.6E-11 68.7 15.7 129 14-143 105-237 (282)
163 3q49_B STIP1 homology and U bo 98.7 2.7E-07 9.1E-12 63.5 12.0 98 43-142 8-105 (137)
164 1elr_A TPR2A-domain of HOP; HO 98.7 1.1E-07 3.8E-12 64.5 9.9 112 45-160 5-122 (131)
165 2dba_A Smooth muscle cell asso 98.7 6.9E-07 2.4E-11 62.1 14.0 98 43-143 27-128 (148)
166 1elr_A TPR2A-domain of HOP; HO 98.7 3.8E-07 1.3E-11 61.9 12.0 97 12-108 5-108 (131)
167 3sz7_A HSC70 cochaperone (SGT) 98.7 8.9E-07 3.1E-11 63.1 14.0 97 114-214 11-107 (164)
168 3q49_B STIP1 homology and U bo 98.7 5.5E-07 1.9E-11 61.8 12.3 97 10-107 8-105 (137)
169 2dba_A Smooth muscle cell asso 98.7 1.8E-06 6.2E-11 59.9 14.9 97 10-107 27-127 (148)
170 1hxi_A PEX5, peroxisome target 98.7 2E-07 7E-12 62.9 9.3 94 47-142 20-113 (121)
171 2fbn_A 70 kDa peptidylprolyl i 98.6 1E-06 3.5E-11 64.9 13.7 98 187-287 89-187 (198)
172 4b4t_Q 26S proteasome regulato 98.6 4.8E-06 1.6E-10 69.0 19.1 192 19-211 12-241 (434)
173 3ro3_A PINS homolog, G-protein 98.6 1.1E-06 3.9E-11 61.8 12.9 133 152-285 11-157 (164)
174 1hxi_A PEX5, peroxisome target 98.6 1.3E-06 4.6E-11 58.8 11.9 96 187-285 18-113 (121)
175 2uy1_A Cleavage stimulation fa 98.6 9.8E-05 3.4E-09 62.4 25.0 174 97-284 197-411 (493)
176 3k9i_A BH0479 protein; putativ 98.5 2E-07 6.8E-12 62.4 6.6 82 25-107 4-89 (117)
177 2xev_A YBGF; tetratricopeptide 98.5 1.8E-06 6.3E-11 58.5 11.5 91 50-142 8-104 (129)
178 3dss_A Geranylgeranyl transfer 98.5 0.00019 6.5E-09 56.9 25.1 220 55-285 40-303 (331)
179 3ro3_A PINS homolog, G-protein 98.5 1.5E-06 5.1E-11 61.1 11.3 95 81-176 11-114 (164)
180 1wao_1 Serine/threonine protei 98.5 2.5E-07 8.4E-12 78.0 8.1 120 17-138 12-134 (477)
181 2xev_A YBGF; tetratricopeptide 98.5 5.6E-06 1.9E-10 56.0 13.3 92 16-108 7-105 (129)
182 1ihg_A Cyclophilin 40; ppiase 98.5 2.7E-06 9.3E-11 69.1 13.3 124 45-171 224-362 (370)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.9E-06 6.5E-11 72.2 12.6 130 11-142 268-414 (457)
184 3k9i_A BH0479 protein; putativ 98.5 7.6E-07 2.6E-11 59.5 8.3 87 163-251 3-91 (117)
185 1ihg_A Cyclophilin 40; ppiase 98.5 2.3E-06 8E-11 69.5 12.5 122 12-135 224-362 (370)
186 3rkv_A Putative peptidylprolyl 98.5 9.8E-07 3.4E-11 62.7 9.1 99 44-143 11-126 (162)
187 3rkv_A Putative peptidylprolyl 98.5 2.2E-06 7.6E-11 60.8 10.8 102 11-115 11-131 (162)
188 1wao_1 Serine/threonine protei 98.5 2E-06 6.9E-11 72.4 12.0 124 47-175 9-134 (477)
189 1dce_A Protein (RAB geranylger 98.4 3.6E-05 1.2E-09 66.1 17.5 187 12-204 26-244 (567)
190 2if4_A ATFKBP42; FKBP-like, al 98.3 1.7E-06 5.7E-11 69.5 7.7 98 81-182 232-330 (338)
191 2if4_A ATFKBP42; FKBP-like, al 98.3 3.4E-06 1.2E-10 67.7 8.9 149 44-215 179-328 (338)
192 3n71_A Histone lysine methyltr 98.3 5.3E-06 1.8E-10 69.7 10.2 98 81-179 353-463 (490)
193 2hr2_A Hypothetical protein; a 98.3 1.2E-05 3.9E-10 56.3 10.2 97 46-142 13-130 (159)
194 2kat_A Uncharacterized protein 98.3 5.2E-06 1.8E-10 55.1 8.2 78 29-107 3-81 (115)
195 2l6j_A TPR repeat-containing p 98.2 1.6E-06 5.5E-11 57.0 4.8 64 44-108 4-67 (111)
196 1zu2_A Mitochondrial import re 98.2 3.9E-06 1.3E-10 58.6 6.5 98 22-122 13-132 (158)
197 2kat_A Uncharacterized protein 98.2 2.4E-05 8.3E-10 51.8 9.9 80 62-143 3-82 (115)
198 3n71_A Histone lysine methyltr 98.2 2.9E-05 9.9E-10 65.3 12.4 125 90-215 320-464 (490)
199 2hr2_A Hypothetical protein; a 98.2 6.8E-05 2.3E-09 52.4 12.2 63 223-285 59-130 (159)
200 1klx_A Cysteine rich protein B 98.1 5.9E-05 2E-09 51.9 11.7 110 25-143 9-126 (138)
201 1dce_A Protein (RAB geranylger 98.1 0.00032 1.1E-08 60.3 18.1 172 96-275 46-244 (567)
202 2l6j_A TPR repeat-containing p 98.1 3.4E-05 1.2E-09 50.4 9.4 92 77-171 2-99 (111)
203 1na3_A Designed protein CTPR2; 98.1 2.9E-05 9.9E-10 48.7 8.6 82 43-126 8-89 (91)
204 1na3_A Designed protein CTPR2; 98.0 8.8E-05 3E-09 46.4 9.9 82 79-163 9-90 (91)
205 3ma5_A Tetratricopeptide repea 98.0 3.3E-05 1.1E-09 49.8 7.8 63 43-106 6-68 (100)
206 1klx_A Cysteine rich protein B 97.9 0.00043 1.5E-08 47.5 13.1 110 58-180 9-126 (138)
207 3ma5_A Tetratricopeptide repea 97.9 8.7E-05 3E-09 47.8 8.0 60 188-248 9-68 (100)
208 1zu2_A Mitochondrial import re 97.8 8.2E-05 2.8E-09 51.9 7.7 99 55-158 13-132 (158)
209 3ly7_A Transcriptional activat 97.7 0.0014 4.6E-08 52.5 13.6 136 43-183 193-342 (372)
210 1wy6_A Hypothetical protein ST 97.6 0.0068 2.3E-07 40.5 16.9 148 117-289 8-157 (172)
211 3qwp_A SET and MYND domain-con 97.5 0.00057 2E-08 56.5 10.1 92 51-142 294-399 (429)
212 3qww_A SET and MYND domain-con 97.5 0.00022 7.5E-09 59.0 7.5 62 80-141 341-409 (433)
213 2kc7_A BFR218_protein; tetratr 97.5 0.00045 1.5E-08 44.0 7.1 59 192-251 6-65 (99)
214 3mkq_A Coatomer beta'-subunit; 97.5 0.011 3.7E-07 53.0 18.2 155 18-211 606-761 (814)
215 3ly7_A Transcriptional activat 97.4 0.0044 1.5E-07 49.6 13.4 64 185-250 276-339 (372)
216 3qww_A SET and MYND domain-con 97.4 0.0013 4.5E-08 54.4 10.8 88 198-285 310-410 (433)
217 2kc7_A BFR218_protein; tetratr 97.4 0.00021 7.3E-09 45.6 4.9 57 51-108 7-64 (99)
218 3qwp_A SET and MYND domain-con 97.4 0.0011 3.7E-08 54.9 9.6 89 90-179 298-399 (429)
219 1pc2_A Mitochondria fission pr 97.2 0.0051 1.8E-07 42.4 10.0 82 166-250 14-100 (152)
220 3mkq_A Coatomer beta'-subunit; 97.2 0.014 4.8E-07 52.4 15.6 154 53-247 608-762 (814)
221 3bee_A Putative YFRE protein; 97.2 0.0036 1.2E-07 39.5 8.4 65 43-108 5-72 (93)
222 3mkq_B Coatomer subunit alpha; 97.1 0.018 6.3E-07 40.7 12.2 106 17-141 11-116 (177)
223 3u64_A Protein TP_0956; tetrat 97.0 0.02 6.9E-07 44.1 12.4 82 60-143 179-269 (301)
224 3bee_A Putative YFRE protein; 97.0 0.018 6E-07 36.2 10.4 67 76-143 3-72 (93)
225 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0081 2.8E-07 38.7 8.9 67 185-251 4-76 (104)
226 1pc2_A Mitochondria fission pr 97.0 0.013 4.6E-07 40.4 10.2 83 59-143 13-100 (152)
227 2v5f_A Prolyl 4-hydroxylase su 96.6 0.028 9.5E-07 36.1 9.6 62 81-142 7-74 (104)
228 3lvg_A Clathrin heavy chain 1; 96.5 8.5E-07 2.9E-11 72.4 -15.6 244 11-282 54-316 (624)
229 3u64_A Protein TP_0956; tetrat 96.4 0.021 7.1E-07 44.0 8.5 92 27-120 179-283 (301)
230 1nzn_A CGI-135 protein, fissio 96.3 0.036 1.2E-06 36.8 8.3 92 157-251 8-104 (126)
231 1wy6_A Hypothetical protein ST 96.2 0.15 5.2E-06 34.2 13.5 120 57-182 20-156 (172)
232 4h7y_A Dual specificity protei 96.1 0.18 6.1E-06 34.6 12.7 51 200-251 74-124 (161)
233 1nzn_A CGI-135 protein, fissio 96.1 0.085 2.9E-06 35.0 9.5 86 56-143 13-103 (126)
234 4ady_A RPN2, 26S proteasome re 95.9 0.99 3.4E-05 41.0 17.7 253 21-284 384-656 (963)
235 4b4t_P 26S proteasome regulato 95.7 0.76 2.6E-05 38.1 19.3 92 192-283 143-244 (445)
236 4fhn_B Nucleoporin NUP120; pro 95.2 2.1 7.1E-05 40.3 18.6 145 15-166 816-987 (1139)
237 2ff4_A Probable regulatory pro 95.2 0.07 2.4E-06 43.5 7.7 74 45-119 172-250 (388)
238 3mkq_B Coatomer subunit alpha; 95.1 0.57 2E-05 33.1 16.8 45 91-141 17-61 (177)
239 3lvg_A Clathrin heavy chain 1; 95.0 0.0003 1E-08 57.8 -6.5 216 10-247 82-317 (624)
240 2ff4_A Probable regulatory pro 95.0 0.13 4.6E-06 41.8 8.9 128 8-154 109-249 (388)
241 4fhn_B Nucleoporin NUP120; pro 95.0 1.1 3.8E-05 42.1 16.0 191 85-283 818-1047(1139)
242 4h7y_A Dual specificity protei 94.7 0.66 2.3E-05 31.8 11.3 102 114-219 13-127 (161)
243 4gns_B Protein CSD3, chitin bi 94.7 0.38 1.3E-05 42.6 11.3 53 229-283 345-397 (754)
244 4gns_B Protein CSD3, chitin bi 94.5 0.3 1E-05 43.3 10.3 125 15-141 252-398 (754)
245 4ady_A RPN2, 26S proteasome re 94.0 3.6 0.00012 37.5 16.8 226 17-250 417-658 (963)
246 1v54_E Cytochrome C oxidase po 93.8 0.73 2.5E-05 29.0 9.2 49 95-143 26-74 (109)
247 1v54_E Cytochrome C oxidase po 93.7 0.77 2.6E-05 28.9 9.5 69 53-122 18-87 (109)
248 3ffl_A Anaphase-promoting comp 93.2 0.77 2.6E-05 32.0 8.4 57 155-212 25-89 (167)
249 1zbp_A Hypothetical protein VP 92.6 1.5 5E-05 33.4 9.8 55 53-108 6-60 (273)
250 2y69_E Cytochrome C oxidase su 92.3 1.7 5.7E-05 29.1 9.2 63 94-158 68-130 (152)
251 1wdy_A 2-5A-dependent ribonucl 92.3 1.5 5.2E-05 33.2 10.2 252 15-293 6-282 (285)
252 2y69_E Cytochrome C oxidase su 92.3 1.7 5.8E-05 29.1 9.5 70 52-122 60-130 (152)
253 3o48_A Mitochondria fission 1 92.3 1.7 5.8E-05 29.0 9.8 70 181-250 35-107 (134)
254 3esl_A Checkpoint serine/threo 91.9 2.7 9.1E-05 30.4 10.2 52 200-251 93-145 (202)
255 4b4t_P 26S proteasome regulato 91.3 5.5 0.00019 33.0 20.7 250 25-281 30-319 (445)
256 3txn_A 26S proteasome regulato 91.3 5.1 0.00018 32.5 15.8 26 46-71 21-46 (394)
257 4b4t_R RPN7, 26S proteasome re 91.2 2 6.9E-05 35.4 10.2 125 60-185 110-242 (429)
258 1qsa_A Protein (soluble lytic 90.9 7.5 0.00026 33.8 20.7 115 165-285 229-347 (618)
259 1zbp_A Hypothetical protein VP 90.3 3.6 0.00012 31.3 9.8 53 124-179 7-59 (273)
260 2uwj_G Type III export protein 89.7 2.5 8.7E-05 26.5 8.6 85 129-224 21-105 (115)
261 2p58_C Putative type III secre 89.4 2.7 9.3E-05 26.4 9.3 85 129-224 22-106 (116)
262 1y8m_A FIS1; mitochondria, unk 89.3 3.7 0.00013 27.8 11.5 67 183-250 36-106 (144)
263 3ffl_A Anaphase-promoting comp 88.5 2.6 8.9E-05 29.4 7.4 56 85-140 26-89 (167)
264 1y8m_A FIS1; mitochondria, unk 88.3 4.4 0.00015 27.4 10.7 68 76-143 36-106 (144)
265 3eiq_C Programmed cell death p 88.2 7.2 0.00025 31.2 10.7 71 46-119 56-128 (358)
266 3txn_A 26S proteasome regulato 87.8 9.8 0.00034 30.9 23.7 232 12-248 20-282 (394)
267 3eu9_A Huntingtin-interacting 87.7 5.3 0.00018 29.2 9.6 17 20-36 15-31 (240)
268 3o48_A Mitochondria fission 1 87.6 4.7 0.00016 26.9 10.1 68 76-143 37-107 (134)
269 4a1g_A Mitotic checkpoint seri 87.5 5.3 0.00018 27.4 9.2 46 205-250 84-130 (152)
270 2uwj_G Type III export protein 86.9 3.8 0.00013 25.7 6.5 89 24-119 19-107 (115)
271 2wvi_A Mitotic checkpoint seri 86.8 2.2 7.7E-05 29.7 6.3 54 203-257 77-131 (164)
272 1wdy_A 2-5A-dependent ribonucl 85.1 9.6 0.00033 28.6 10.1 218 49-293 7-249 (285)
273 3kea_A K1L; tropism, ANK repea 84.6 11 0.00039 28.6 10.4 210 23-258 8-224 (285)
274 3lpz_A GET4 (YOR164C homolog); 84.2 14 0.00047 29.2 19.2 112 13-137 37-159 (336)
275 2zu6_B Programmed cell death p 83.4 14 0.00049 28.8 10.8 26 47-72 6-31 (307)
276 1k1a_A B-cell lymphoma 3-encod 82.9 11 0.00037 27.6 9.3 82 54-139 16-101 (241)
277 4b4t_R RPN7, 26S proteasome re 80.8 22 0.00076 29.2 14.6 60 152-212 133-194 (429)
278 4aez_C MAD3, mitotic spindle c 80.6 13 0.00044 27.4 8.3 49 203-251 131-180 (223)
279 2wpv_A GET4, UPF0363 protein Y 80.5 19 0.00064 28.2 15.1 163 95-278 13-189 (312)
280 3hra_A Ankyrin repeat family p 79.9 5 0.00017 28.5 6.3 15 206-220 158-172 (201)
281 3kea_A K1L; tropism, ANK repea 79.7 8.1 0.00028 29.5 7.7 204 17-246 34-243 (285)
282 4b4t_S RPN3, 26S proteasome re 77.5 21 0.00071 30.2 9.7 65 79-143 231-299 (523)
283 3esl_A Checkpoint serine/threo 77.2 18 0.00062 26.1 10.8 53 60-112 95-148 (202)
284 3lpz_A GET4 (YOR164C homolog); 75.7 28 0.00095 27.5 20.5 140 89-249 65-215 (336)
285 2ion_A PDCD4, programmed cell 75.5 17 0.00057 24.9 7.8 65 46-111 11-77 (152)
286 2nsz_A Programmed cell death p 75.0 15 0.00053 24.2 8.7 64 47-111 10-75 (129)
287 3d5l_A Regulatory protein RECX 73.7 24 0.00082 25.9 12.0 29 61-89 93-121 (221)
288 3aji_A 26S proteasome non-ATPa 73.2 23 0.0008 25.5 9.9 20 51-70 10-29 (231)
289 3ljn_A Hypothetical protein; a 72.4 22 0.00077 28.0 8.7 217 10-246 17-266 (364)
290 1k1a_A B-cell lymphoma 3-encod 71.8 26 0.00089 25.4 11.1 190 85-292 12-211 (241)
291 3jxi_A Vanilloid receptor-rela 71.7 8.7 0.0003 28.6 5.9 55 86-140 9-72 (260)
292 2d2s_A Exocyst complex compone 70.6 30 0.001 25.7 8.8 89 50-141 24-118 (235)
293 3ltm_A Alpha-REP4; protein eng 70.4 26 0.0009 24.9 19.8 30 219-249 155-184 (211)
294 2p58_C Putative type III secre 69.7 18 0.00062 22.8 8.6 15 231-245 50-64 (116)
295 1n11_A Ankyrin; clathrin, BAND 65.2 54 0.0018 26.6 13.2 115 16-138 16-134 (437)
296 1oyz_A Hypothetical protein YI 65.1 41 0.0014 25.2 23.6 217 42-285 35-262 (280)
297 2nsz_A Programmed cell death p 65.1 27 0.00092 23.1 7.7 68 81-150 9-78 (129)
298 3b7b_A Euchromatic histone-lys 65.0 27 0.00092 25.3 7.3 22 264-285 214-235 (237)
299 3hra_A Ankyrin repeat family p 63.6 35 0.0012 23.8 8.7 113 18-139 9-128 (201)
300 3ltm_A Alpha-REP4; protein eng 63.3 37 0.0013 24.1 19.2 168 26-214 17-184 (211)
301 2xig_A Ferric uptake regulatio 62.8 31 0.001 23.4 6.6 38 91-128 38-75 (150)
302 2d2s_A Exocyst complex compone 61.0 48 0.0016 24.6 9.0 88 16-106 23-118 (235)
303 2b7e_A PRE-mRNA processing pro 60.7 6.5 0.00022 21.9 2.2 29 96-124 3-31 (59)
304 2r9g_A AAA ATPase, central reg 60.3 45 0.0015 24.0 10.1 46 82-128 14-62 (204)
305 3bge_A Predicted ATPase; struc 60.2 45 0.0015 24.0 9.2 46 83-128 8-56 (201)
306 2ion_A PDCD4, programmed cell 60.1 38 0.0013 23.1 8.3 68 81-150 11-80 (152)
307 3ltj_A Alpharep-4; protein eng 59.8 42 0.0014 23.6 16.8 172 42-235 26-197 (201)
308 3eyy_A Putative iron uptake re 59.7 28 0.00097 23.4 6.0 34 95-128 33-66 (145)
309 2wpv_A GET4, UPF0363 protein Y 58.8 63 0.0021 25.2 24.3 70 102-171 80-155 (312)
310 3eu9_A Huntingtin-interacting 58.5 48 0.0016 23.8 8.6 208 54-287 16-237 (240)
311 4a1g_A Mitotic checkpoint seri 58.5 41 0.0014 23.0 10.8 52 98-150 84-136 (152)
312 2fe3_A Peroxide operon regulat 57.4 38 0.0013 22.8 6.3 37 92-128 34-70 (145)
313 1ug3_A EIF4GI, eukaryotic prot 56.9 28 0.00095 27.5 6.3 62 14-75 14-77 (339)
314 4gq2_M Nucleoporin NUP120; bet 56.1 1.3E+02 0.0043 27.9 13.1 131 17-164 816-950 (950)
315 2fu4_A Ferric uptake regulatio 56.0 29 0.00098 20.4 5.9 31 133-164 36-66 (83)
316 3b7b_A Euchromatic histone-lys 55.8 50 0.0017 23.8 7.4 47 17-64 14-61 (237)
317 2zu6_B Programmed cell death p 55.0 73 0.0025 24.8 12.5 68 13-81 5-74 (307)
318 3ltj_A Alpharep-4; protein eng 54.9 52 0.0018 23.1 18.1 169 78-269 27-195 (201)
319 4gq2_M Nucleoporin NUP120; bet 53.6 1.4E+02 0.0047 27.6 11.0 48 188-235 899-950 (950)
320 3ctd_A Putative ATPase, AAA fa 53.0 63 0.0022 23.5 10.6 64 80-143 33-104 (213)
321 2wvi_A Mitotic checkpoint seri 52.8 55 0.0019 22.7 10.7 52 98-150 79-131 (164)
322 3ygs_P Procaspase 9; apoptosis 52.8 30 0.001 21.4 4.8 36 94-133 52-87 (97)
323 2ijq_A Hypothetical protein; s 52.4 55 0.0019 22.6 8.6 51 57-107 45-103 (161)
324 1bpo_A Protein (clathrin); cla 52.2 1E+02 0.0035 25.7 8.9 107 25-135 343-450 (494)
325 1bpo_A Protein (clathrin); cla 52.1 1E+02 0.0035 25.7 9.5 112 128-246 343-454 (494)
326 1mzb_A Ferric uptake regulatio 51.4 45 0.0015 22.1 5.8 34 94-127 33-66 (136)
327 1wgl_A TOLL-interacting protei 51.1 30 0.001 19.2 4.4 25 268-292 34-58 (59)
328 1q2z_A ATP-dependent DNA helic 51.0 7.7 0.00026 25.4 1.8 52 236-290 42-96 (120)
329 4aez_C MAD3, mitotic spindle c 50.9 71 0.0024 23.5 8.5 54 96-150 131-185 (223)
330 3ljn_A Hypothetical protein; a 50.6 88 0.003 24.5 9.7 219 42-282 16-266 (364)
331 4fke_A Aminopeptidase N; zinc 50.4 1.5E+02 0.0052 27.2 17.2 162 46-215 688-860 (909)
332 2yru_A Steroid receptor RNA ac 49.4 36 0.0012 22.1 4.8 41 102-142 49-89 (118)
333 3twr_A Tankyrase-2; ankyrin re 48.2 59 0.002 21.8 6.6 21 16-36 10-30 (165)
334 1oai_A Nuclear RNA export fact 47.1 17 0.00056 20.3 2.5 15 129-143 35-49 (59)
335 3twr_A Tankyrase-2; ankyrin re 46.5 63 0.0022 21.6 6.7 111 122-244 13-128 (165)
336 2w57_A Ferric uptake regulatio 46.5 50 0.0017 22.4 5.5 35 94-128 32-66 (150)
337 4g8k_A 2-5A-dependent ribonucl 46.1 1E+02 0.0034 23.8 10.6 52 15-67 26-79 (337)
338 1mzb_A Ferric uptake regulatio 46.0 62 0.0021 21.4 6.5 62 104-167 8-70 (136)
339 3eyy_A Putative iron uptake re 45.6 66 0.0023 21.6 6.3 62 103-167 8-69 (145)
340 3bqo_A Telomeric repeat-bindin 44.7 71 0.0024 23.0 5.9 45 27-71 94-144 (211)
341 2w57_A Ferric uptake regulatio 44.2 72 0.0024 21.6 6.5 63 103-167 6-69 (150)
342 1bd8_A P19INK4D CDK4/6 inhibit 43.8 67 0.0023 21.2 6.7 17 229-245 106-122 (156)
343 3bu8_A Telomeric repeat-bindin 43.4 43 0.0015 24.5 4.7 44 16-59 119-162 (235)
344 2rg8_A Programmed cell death p 43.3 80 0.0027 21.9 7.2 25 48-72 14-38 (165)
345 2etb_A Transient receptor pote 42.5 97 0.0033 22.6 8.0 54 86-139 6-68 (256)
346 1n11_A Ankyrin; clathrin, BAND 42.4 1.3E+02 0.0045 24.2 12.0 51 17-68 50-101 (437)
347 3v30_A DNA-binding protein rfx 42.0 77 0.0026 21.3 6.3 148 122-284 7-159 (172)
348 3l6a_A Eukaryotic translation 41.9 1.3E+02 0.0045 24.0 9.5 67 46-113 14-82 (364)
349 3jxi_A Vanilloid receptor-rela 41.8 99 0.0034 22.6 7.1 162 121-290 9-211 (260)
350 2o03_A Probable zinc uptake re 41.3 39 0.0013 22.2 4.2 42 87-128 18-59 (131)
351 1ug3_A EIF4GI, eukaryotic prot 41.1 1.3E+02 0.0044 23.7 10.8 26 81-106 13-38 (339)
352 4fke_A Aminopeptidase N; zinc 41.0 2.2E+02 0.0074 26.2 19.2 158 84-249 691-859 (909)
353 3kae_A CDC27, possible protein 40.6 95 0.0032 22.0 7.3 112 21-141 12-141 (242)
354 3i5p_A Nucleoporin NUP170; hel 40.4 1.7E+02 0.0058 24.8 8.8 36 185-220 216-251 (525)
355 1rw2_A ATP-dependent DNA helic 40.3 10 0.00035 26.0 1.2 52 236-290 73-127 (152)
356 3aji_A 26S proteasome non-ATPa 40.1 99 0.0034 22.0 8.4 155 120-293 9-168 (231)
357 4ets_A Ferric uptake regulatio 39.8 90 0.0031 21.4 6.9 10 204-213 50-59 (162)
358 4ets_A Ferric uptake regulatio 39.8 90 0.0031 21.4 6.9 57 130-188 13-71 (162)
359 1d1d_A Protein (capsid protein 39.7 92 0.0031 23.6 6.3 46 43-90 37-83 (262)
360 2xig_A Ferric uptake regulatio 39.6 86 0.0029 21.2 7.4 63 103-167 16-78 (150)
361 3eiq_C Programmed cell death p 39.5 1.4E+02 0.0049 23.8 17.2 77 13-90 56-134 (358)
362 2o03_A Probable zinc uptake re 39.3 62 0.0021 21.2 5.0 47 192-238 16-62 (131)
363 3mwm_A ZUR, putative metal upt 39.0 35 0.0012 22.8 3.7 44 85-128 19-62 (139)
364 3f3f_C Nucleoporin NUP85; stru 38.4 1.7E+02 0.0057 25.1 8.2 72 130-205 497-568 (570)
365 3bqo_A Telomeric repeat-bindin 37.7 32 0.0011 24.7 3.3 26 16-41 122-147 (211)
366 2f6m_A Suppressor protein STP2 37.4 57 0.002 18.5 4.2 44 224-269 5-48 (65)
367 3d9h_A CDNA FLJ77766, highly s 37.3 1.2E+02 0.004 22.9 7.0 209 11-245 12-243 (285)
368 2fe3_A Peroxide operon regulat 35.5 99 0.0034 20.7 7.5 63 103-167 11-73 (145)
369 1bd8_A P19INK4D CDK4/6 inhibit 35.4 94 0.0032 20.4 5.8 16 89-104 9-24 (156)
370 3mwm_A ZUR, putative metal upt 35.4 60 0.0021 21.6 4.4 46 192-237 19-64 (139)
371 2yru_A Steroid receptor RNA ac 34.2 95 0.0033 20.1 5.7 43 66-108 48-90 (118)
372 3l6a_A Eukaryotic translation 33.6 1.8E+02 0.0063 23.2 16.7 73 13-87 14-91 (364)
373 2fu4_A Ferric uptake regulatio 33.3 74 0.0025 18.5 6.5 61 68-129 6-67 (83)
374 3t8k_A Uncharacterized protein 32.9 1.2E+02 0.0042 21.0 8.9 131 157-290 42-184 (186)
375 3f3f_C Nucleoporin NUP85; stru 32.8 2.4E+02 0.0081 24.2 8.5 74 93-169 495-568 (570)
376 1qsa_A Protein (soluble lytic 31.9 2.6E+02 0.0088 24.4 27.8 225 59-294 229-487 (618)
377 3kae_A CDC27, possible protein 31.8 1.4E+02 0.0047 21.2 9.6 81 23-107 45-142 (242)
378 2etb_A Transient receptor pote 31.8 1.2E+02 0.004 22.2 6.1 24 197-220 10-33 (256)
379 3m6y_A 4-hydroxy-2-oxoglutarat 31.6 76 0.0026 23.7 4.5 84 202-285 170-269 (275)
380 3i5p_A Nucleoporin NUP170; hel 31.6 2.4E+02 0.0082 23.9 10.7 45 95-142 51-95 (525)
381 1awc_B Protein (GA binding pro 31.2 1.1E+02 0.0038 20.0 6.8 23 16-38 4-26 (153)
382 3f6q_A Integrin-linked protein 31.1 1.2E+02 0.0042 20.5 7.0 149 123-293 11-167 (179)
383 3utm_A Tankyrase-1; tankyrase, 31.1 1.4E+02 0.0048 22.8 6.7 15 124-138 31-45 (351)
384 3m0z_A Putative aldolase; MCSG 30.9 72 0.0025 23.5 4.3 84 202-285 147-246 (249)
385 3mv2_A Coatomer subunit alpha; 29.8 2E+02 0.0069 22.5 10.7 49 95-143 186-236 (325)
386 4f52_E Glomulin; cullin-ring E 29.6 2.8E+02 0.0094 24.0 9.2 27 43-69 27-53 (596)
387 1ixm_A SPO0B, protein (sporula 29.5 1.2E+02 0.0042 21.5 5.4 72 200-283 13-84 (192)
388 3e3v_A Regulatory protein RECX 29.2 1.5E+02 0.005 20.7 8.3 27 98-124 52-78 (177)
389 2jul_A Calsenilin; EF-hand, ca 29.1 1.7E+02 0.0059 21.5 7.5 131 8-140 108-255 (256)
390 3gvo_A Pumilio 2, pumilio homo 29.0 41 0.0014 26.7 3.1 22 226-247 219-240 (351)
391 2qx5_A Nucleoporin NIC96; mRNA 28.8 3E+02 0.01 24.2 8.9 28 114-141 533-565 (661)
392 1uwk_A Urocanate hydratase; hy 28.7 27 0.00094 29.0 2.0 47 234-294 216-262 (557)
393 1x87_A Urocanase protein; stru 28.7 28 0.00095 29.0 2.1 47 234-294 211-257 (551)
394 1wty_A Hypothetical protein TT 28.5 1.2E+02 0.0041 19.5 7.1 90 165-264 3-93 (119)
395 2dzn_A Probable 26S proteasome 28.5 1.2E+02 0.0039 21.6 5.5 153 121-292 6-169 (228)
396 2fkn_A Urocanate hydratase; ro 28.2 28 0.00097 28.9 2.0 47 234-294 212-258 (552)
397 3utm_A Tankyrase-1; tankyrase, 27.9 2E+02 0.0069 21.9 13.1 113 16-138 26-145 (351)
398 3t8k_A Uncharacterized protein 27.6 1.6E+02 0.0053 20.5 8.7 28 86-113 42-69 (186)
399 4b4t_S RPN3, 26S proteasome re 27.5 2.8E+02 0.0097 23.5 12.2 62 12-73 232-299 (523)
400 2ko4_A Mediator of RNA polymer 27.5 75 0.0026 18.8 3.2 37 32-68 24-60 (81)
401 2ijq_A Hypothetical protein; s 27.2 1.6E+02 0.0053 20.4 8.4 52 91-142 44-103 (161)
402 2dzn_A Probable 26S proteasome 26.8 1.7E+02 0.0058 20.6 8.6 15 230-244 180-194 (228)
403 2p1h_A APAF-1, apoptotic prote 26.8 1.1E+02 0.0038 18.5 5.6 33 93-129 50-82 (94)
404 2dod_A Transcription elongatio 25.5 80 0.0027 18.9 3.2 31 95-126 16-47 (82)
405 2qfz_A TBC1 domain family memb 25.4 2.2E+02 0.0074 22.4 6.8 110 61-176 189-311 (345)
406 1uzc_A Hypothetical protein FL 25.3 72 0.0025 18.5 2.9 31 95-126 14-45 (71)
407 2i7a_A Calpain 13; calcium-dep 24.2 1.8E+02 0.0061 20.0 6.8 42 27-68 45-86 (174)
408 2p22_A Suppressor protein STP2 23.8 1.3E+02 0.0045 21.1 4.5 46 223-270 113-158 (174)
409 1yyh_A HN1;, notch 1, ankyrin 23.5 1.5E+02 0.0051 21.6 5.3 46 196-245 164-211 (253)
410 2rg8_A Programmed cell death p 23.5 1.9E+02 0.0064 20.0 7.6 60 13-72 12-73 (165)
411 2fv2_A RCD1 required for cell 23.2 1.4E+02 0.0047 22.6 4.7 56 195-250 182-238 (268)
412 2pnn_A Transient receptor pote 22.5 2.3E+02 0.008 20.8 9.5 51 89-139 20-79 (273)
413 3lxu_X Tripeptidyl-peptidase 2 22.4 5.5E+02 0.019 25.0 11.0 85 202-291 1265-1350(1354)
414 1a1w_A FADD protein; apoptosis 22.0 75 0.0026 19.4 2.7 39 206-245 43-81 (91)
415 1ihb_A P18-INK4C(INK6), cyclin 21.9 1.3E+02 0.0043 19.9 4.3 23 14-36 5-27 (162)
416 3no6_A Transcriptional activat 21.7 2.5E+02 0.0086 20.8 7.6 18 80-97 130-148 (248)
417 3cqc_A Nuclear pore complex pr 21.6 82 0.0028 24.0 3.4 25 15-39 38-62 (270)
418 2keb_A DNA polymerase subunit 21.6 1.6E+02 0.0053 18.4 7.5 58 204-263 27-88 (101)
419 3t5v_B Nuclear mRNA export pro 21.5 1.7E+02 0.0057 24.3 5.5 61 189-249 179-248 (455)
420 2xdt_A Endoplasmic reticulum a 21.0 4.9E+02 0.017 23.9 15.3 94 43-143 679-779 (897)
421 2crb_A Nuclear receptor bindin 20.7 1.6E+02 0.0054 18.1 4.0 25 45-69 16-40 (97)
422 1ixm_A SPO0B, protein (sporula 20.4 1.9E+02 0.0064 20.6 4.9 51 189-248 35-85 (192)
423 2f8y_A Notch homolog 1, transl 20.1 2.3E+02 0.0079 19.8 9.2 12 228-239 195-206 (223)
424 2qfz_A TBC1 domain family memb 20.0 2.7E+02 0.0094 21.8 6.4 44 208-251 231-274 (345)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.1e-37 Score=258.79 Aligned_cols=205 Identities=12% Similarity=0.073 Sum_probs=181.9
Q ss_pred hHHHHHHhhcccCC--C-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------H
Q 022531 28 HSGERYFEGLPLSA--K-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ---------V 95 (295)
Q Consensus 28 ~~A~~~~~~~~~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---------~ 95 (295)
..+..+.+.+.+.. + ....++.+|.+|++.|++++|+++|++|.+.|++||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34555666666552 2 3456889999999999999999999999999999999999999999987664 7
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHH
Q 022531 96 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV 175 (295)
Q Consensus 96 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (295)
++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|... |+.|+..+|+++|.+|++.|++++|.+ +++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~-l~~ 164 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYE-VDA 164 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHH-HHH
Confidence 899999999999999999999999999999999999999999999998 999999999999999999999999999 999
Q ss_pred HHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhc
Q 022531 176 EAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 234 (295)
Q Consensus 176 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 234 (295)
+|.+.+..||..||++||.+|++.|++++|.+++++|++.|..|+..||+.++..|+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998864
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.4e-37 Score=257.44 Aligned_cols=207 Identities=12% Similarity=0.146 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC---------H
Q 022531 61 EKAEELFERVKQSNLSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN---------I 130 (295)
Q Consensus 61 ~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---------~ 130 (295)
..+..+.+++.+.+..+.+. .++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 44666777888887766554 6899999999999999999999999999999999999999999987664 6
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHH
Q 022531 131 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 210 (295)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 210 (295)
++|.++|++|... |+.||..+|+++|.+|++.|++++|.+ ++++|...+..||..+|+.+|.+|++.|++++|.++|+
T Consensus 87 ~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~-l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 87 SRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFD-MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 8899999999998 999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHcc
Q 022531 211 SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 270 (295)
Q Consensus 211 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (295)
+|.+.|+.||..||+.||.+|++.|++++|.++|++|.+.+. .|+..||+.++..|...
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~-~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR-QVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-SBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999886 69999999999999864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.5e-29 Score=217.49 Aligned_cols=275 Identities=9% Similarity=-0.028 Sum_probs=246.2
Q ss_pred CCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022531 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 86 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 86 (295)
+++..+++.++..|.+.|++++|.++|+.+....| +..+|+.++.++.+.|++++|..+|+++.+.. +.+..+|+.++
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 380 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVG 380 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 47899999999999999999999999999987766 78899999999999999999999999998654 56789999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 022531 87 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
..|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++... .+.+..++..++.+|.+.|++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCH
Confidence 999999999999999999987532 35789999999999999999999999999874 356888999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc----cCCCC--HHhHHHHHHHHHhcCChHHH
Q 022531 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT----KQKMT--SRNYICILSSYLMLGHLKEV 240 (295)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~~~~~~A 240 (295)
++|.+ +++.+.+..+. +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|
T Consensus 458 ~~A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 458 LLANE-YLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHH-HHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHH-HHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 99999 99998876544 7788999999999999999999999999776 66777 67899999999999999999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC
Q 022531 241 GEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 292 (295)
.++|+++.+.. +.+..+|..+..+|.+.|++++|.++|+++.+ ..|+.
T Consensus 536 ~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~ 583 (597)
T 2xpi_A 536 IDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNE 583 (597)
T ss_dssp HHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCC
Confidence 99999998865 45889999999999999999999999999987 44543
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.5e-29 Score=217.46 Aligned_cols=276 Identities=11% Similarity=0.056 Sum_probs=243.9
Q ss_pred CCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHH----------------------------------
Q 022531 6 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTAL---------------------------------- 50 (295)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~l---------------------------------- 50 (295)
+..++..+|+.++.+|.+.|++++|.++|+++....| +...+..+
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 4456788999999999999999999999999988766 44444433
Q ss_pred ----HHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc
Q 022531 51 ----LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 126 (295)
Q Consensus 51 ----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 126 (295)
+..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+. .+..++..++.++.+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHE 351 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHH
Confidence 55667889999999999999876 58999999999999999999999999999998653 377889999999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHH
Q 022531 127 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 206 (295)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 206 (295)
.|++++|..+++++... .+.+..+++.++.+|.+.|++++|.+ +++++.+..+ .+..+|+.++.+|.+.|++++|+
T Consensus 352 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARR-YFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999864 46788999999999999999999999 9998877543 36789999999999999999999
Q ss_pred HHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 207 QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 207 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 428 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 428 SAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999998764 4577889999999999999999999999999865 457899999999999999999999999999876
Q ss_pred ----CCCCC
Q 022531 287 ----NCAPT 291 (295)
Q Consensus 287 ----g~~p~ 291 (295)
+..|+
T Consensus 505 ~~~~~~~p~ 513 (597)
T 2xpi_A 505 VKKTQSNEK 513 (597)
T ss_dssp HHHSCCCSG
T ss_pred hhccccchh
Confidence 66665
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5.3e-24 Score=175.46 Aligned_cols=272 Identities=11% Similarity=-0.010 Sum_probs=163.2
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC--------------
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSN-------------- 74 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------- 74 (295)
+...|..+...+.+.|++++|...|+.+....| +..+|..++.++.+.|++++|.+.|+++.+.+
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 445555566666666666666666655554444 34445555555555555555555555444432
Q ss_pred -------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHH
Q 022531 75 -------------------LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 135 (295)
Q Consensus 75 -------------------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 135 (295)
-+.+..+|+.+...+.+.|++++|...|+++.+.+. .+...+..+...+...|++++|..
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 022344455555555555555555555555544321 123445555555555555555555
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 136 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
.|++.... .+.+..++..+..++.+.|++++|.+ .++++....+. +..+|..+...+.+.|++++|++.|+++.+.
T Consensus 225 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 225 AYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAID-TYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555443 13345666677777777777777777 66666654432 4456777777777777777777777777665
Q ss_pred cCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 022531 216 KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 291 (295)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 291 (295)
. +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...|+++++ ..|+
T Consensus 301 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 301 C-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 3 4456667777777777778888877777777632 34566777777788888888888888877775 4454
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=4.2e-24 Score=176.06 Aligned_cols=267 Identities=12% Similarity=0.039 Sum_probs=201.0
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
+...+..+...+.+.|++++|...++......| +..+|..+...+.+.|++++|...|+++.+.. +.+..+|..+..+
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 110 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA 110 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 456677788888999999999999998887766 78899999999999999999999999998864 4456789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
+.+.|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.|+++... .+.+..+|..+..++.+.|+++
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 999999998888888887753 33 445666667777777788887777777764 2344566666777777777776
Q ss_pred hHHHHHHHHHHHhcCC---------------------------------CccccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 168 NAESSTLVEAEKSITQ---------------------------------RQWITYDFLIILYAGLGNKDKIDQIWKSLRM 214 (295)
Q Consensus 168 ~a~~~~~~~~~~~~~~---------------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 214 (295)
+|.. .++++....+. .+..++..+...|...|++++|++.|+++.+
T Consensus 187 ~A~~-~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 187 LAIH-HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHH-HHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666 55555443221 1345666677777777777777777777766
Q ss_pred ccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 215 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 215 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.+ +.+..++..+..++.+.|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...++++.+
T Consensus 266 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 266 LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 53 2245667777778888888888888888877753 45677778888888888888888888888776
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=7.4e-23 Score=171.69 Aligned_cols=267 Identities=12% Similarity=0.011 Sum_probs=167.2
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
+...+..+...+.+.|++++|..+|+.+....| +..+|..++.++...|++++|...|+++.+.+ +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 455677777778888888888888887776555 67777888888888888888888888877764 4456777778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-h---HhHHHH------------HHHHHccCCHHHHHHHHHHHhhcCCCCCCHHH
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPD-I---FTYNLW------------ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK 152 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~-~---~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (295)
|.+.|++++|.+.|+++.+.. |+ . ..+..+ ...+.+.|++++|...|+++... .+.+..+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 179 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAEL 179 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 888888888888888777643 33 2 344444 33366777777777777777653 2445666
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH-HhHHHH----
Q 022531 153 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICI---- 227 (295)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~l---- 227 (295)
+..+..+|.+.|++++|.. .+..+....+ .+..+|..+...|...|++++|+..|+++... .|+. ..+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAIS-DLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHH-HHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHH-HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 6677777777777777777 6666655443 24556666666666666666666666666543 2222 222222
Q ss_pred --------HHHHHhcCChHHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 228 --------LSSYLMLGHLKEVGEIIDQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 228 --------i~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
...+.+.|++++|.+.|+++.+.....|. ...|..+..++.+.|++++|..+++++.+
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555555555555555555543211010 22445555555555555555555555543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=9.8e-23 Score=170.95 Aligned_cols=272 Identities=12% Similarity=-0.009 Sum_probs=232.8
Q ss_pred CCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH---HHHHH
Q 022531 9 LSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA---LMYNE 84 (295)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ 84 (295)
.+...|..+..++...|++++|...|+.+....| +..+|..++.++.+.|++++|...|+++.+.+ +.+. .++..
T Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 136 (450)
T 2y4t_A 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQ 136 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHH
Confidence 4678899999999999999999999999988777 78899999999999999999999999999875 3334 56666
Q ss_pred HH------------HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHH
Q 022531 85 MM------------TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK 152 (295)
Q Consensus 85 li------------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (295)
++ ..+.+.|++++|+..|+++.+... .+..++..+..++.+.|++++|..+|+++... .+.+..+
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 213 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 54 448999999999999999988532 36788999999999999999999999999874 3567889
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHH------------HHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 022531 153 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL------------IILYAGLGNKDKIDQIWKSLRMTKQKMT 220 (295)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~ 220 (295)
+..+..+|...|++++|.. .+..+....+. +...+..+ ...+...|++++|...|+++.+. .|+
T Consensus 214 ~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~ 289 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLS-EVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPS 289 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCS
T ss_pred HHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 9999999999999999999 89888765543 44445444 78899999999999999999875 454
Q ss_pred -----HHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC
Q 022531 221 -----SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 221 -----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 292 (295)
...+..+..++.+.|++++|.+.++++.+.. +.+..+|..+..+|...|++++|...++++++ +.|+.
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~ 362 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNEND 362 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSC
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcch
Confidence 3467888999999999999999999998754 45788999999999999999999999999987 45553
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=5.8e-22 Score=159.28 Aligned_cols=276 Identities=9% Similarity=-0.092 Sum_probs=235.7
Q ss_pred CCCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022531 6 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE 84 (295)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 84 (295)
++..++..+..+...+...|++++|.++|+.+....| +...+..++..+...|++++|..+++++.+.. +.+..+|..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 3455667788899999999999999999999988776 67788888999999999999999999999864 456889999
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 022531 85 MMTLYMSVG-QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163 (295)
Q Consensus 85 li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (295)
+...+...| ++++|.+.|++..+... .+...|..+...+...|++++|...++++... .+.+...+..+...|...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHH
Confidence 999999999 99999999999988643 35778999999999999999999999999885 244567778899999999
Q ss_pred CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccC--------CCCHHhHHHHHHHHHhcC
Q 022531 164 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ--------KMTSRNYICILSSYLMLG 235 (295)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------~~~~~~~~~li~~~~~~~ 235 (295)
|++++|.. .+.......+. +...+..+...+...|++++|...+++...... ......+..+..++...|
T Consensus 173 ~~~~~A~~-~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 173 NNSKLAER-FFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TCHHHHHH-HHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHH-HHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999 88888776543 677889999999999999999999998876421 233567888999999999
Q ss_pred ChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 022531 236 HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 291 (295)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 291 (295)
++++|.+.+++..+.. +.+...|..+..++...|++++|.+.++++.+ +.|+
T Consensus 251 ~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~ 302 (330)
T 3hym_B 251 KYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRD 302 (330)
T ss_dssp CHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSC
T ss_pred CHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCC
Confidence 9999999999998865 35678899999999999999999999999876 4454
No 10
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=1.4e-21 Score=159.66 Aligned_cols=269 Identities=11% Similarity=-0.038 Sum_probs=223.9
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
+...+..+...+.+.|++++|...|+.+....| +..+|..+..++...|++++|...|+++.+.+ +.+..++..+...
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345678899999999999999999999988877 78899999999999999999999999998875 5578899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHhHHH---------------HHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHH
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNL---------------WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY 153 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (295)
|...|++++|.+.|+++.+.... +...+.. .+..+...|++++|...|+++.......++..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999999886432 2222221 2344448899999999999998863222268889
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHh
Q 022531 154 VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM 233 (295)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 233 (295)
..+..+|.+.|++++|.. .+.......+. +..+|..+...+...|++++|+..|+++.... +.+...+..+..+|.+
T Consensus 221 ~~l~~~~~~~g~~~~A~~-~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVD-CFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH-HHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 999999999999999999 88888776543 56789999999999999999999999988764 3456788899999999
Q ss_pred cCChHHHHHHHHHHhhhcCCC---------CCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 022531 234 LGHLKEVGEIIDQWKQSATSD---------FDISACNRLLGAFSDVGLTEKANEFHMLL 283 (295)
Q Consensus 234 ~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 283 (295)
.|++++|...|++..+..... ....+|..+..+|...|++++|..++++.
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 999999999999987754211 11678999999999999999999888744
No 11
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=1e-21 Score=160.37 Aligned_cols=267 Identities=12% Similarity=-0.017 Sum_probs=220.3
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
+...+..+...+.+.|++++|..+|+.+....| +..+|..+...+...|++++|...|+++.+.. +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 445688899999999999999999999988777 78899999999999999999999999999875 4568899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-h----------HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPD-I----------FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 157 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~-~----------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 157 (295)
|...|++++|+..|+++.+.. |+ . ..+..+...+.+.|++++|...|+++.......++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998742 33 1 2233457889999999999999999998632222688999999
Q ss_pred HHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCCh
Q 022531 158 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 237 (295)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 237 (295)
.+|.+.|++++|.. .+.+.....+. +..+|..+...|...|++++|+..|++..+.. +.+...+..+..+|.+.|++
T Consensus 221 ~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAID-AFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 99999999999999 89888876543 67889999999999999999999999998763 33477888999999999999
Q ss_pred HHHHHHHHHHhhhcCCC----------CCHHHHHHHHHHHHccCChHHHHHHHHH
Q 022531 238 KEVGEIIDQWKQSATSD----------FDISACNRLLGAFSDVGLTEKANEFHML 282 (295)
Q Consensus 238 ~~A~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (295)
++|.+.|++..+..... .+..+|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987743111 1367899999999999999998887765
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=6.8e-20 Score=148.73 Aligned_cols=270 Identities=12% Similarity=-0.033 Sum_probs=204.9
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCC---CCHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLS---FNALMYNEM 85 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~l 85 (295)
++..+..+...+...|++++|...|+.+....| +...|..+...+...|++++|...|++..+.. + .+...+..+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l 114 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQL 114 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHH
Confidence 466777788888888888888888888777666 67778888888888888888888888887764 2 244455444
Q ss_pred ------------HHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHH
Q 022531 86 ------------MTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY 153 (295)
Q Consensus 86 ------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (295)
...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++... .+.+..++
T Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 191 (359)
T 3ieg_A 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAF 191 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 4677788888888888888877532 35677888888888888888888888888874 35677788
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHH------------HHHHHHHhcCCHHHHHHHHHHHHhccCCCCH
Q 022531 154 VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD------------FLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 221 (295)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 221 (295)
..+...+...|++++|.. .+.......+. +...+. .+...+...|++++|...+++..+.. |+.
T Consensus 192 ~~la~~~~~~~~~~~A~~-~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~ 267 (359)
T 3ieg_A 192 YKISTLYYQLGDHELSLS-EVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSV 267 (359)
T ss_dssp HHHHHHHHHHTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSS
T ss_pred HHHHHHHHHcCCHHHHHH-HHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCc
Confidence 888888888899998888 78777765543 223332 22556788899999999998887753 332
Q ss_pred H-----hHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 022531 222 R-----NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 291 (295)
Q Consensus 222 ~-----~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 291 (295)
. .+..+..++...|++++|.+.+++..+.. +.+..+|..+..++...|++++|...|+++.+. .|+
T Consensus 268 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~ 338 (359)
T 3ieg_A 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NEN 338 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 2 24457788889999999999999988854 357788899999999999999999999999873 454
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=4e-21 Score=154.16 Aligned_cols=267 Identities=9% Similarity=-0.073 Sum_probs=223.8
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
+...+-.+...+...|++++|..+|+.+....| +...|..+..++...|++++|...|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 445667888899999999999999999988766 78899999999999999999999999998874 5578899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH--------------HH-HHHccCCHHHHHHHHHHHhhcCCCCCCHHHH
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW--------------IS-SCAATLNIDQVKKFLDEMSCDSGGSDDWVKY 153 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (295)
+...|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++... .+.+..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHH
Confidence 99999999999999999886322 23333333 22 377889999999999999875 35578889
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHh
Q 022531 154 VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM 233 (295)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 233 (295)
..+..++.+.|++++|.. .+.......+ .+..++..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 176 ~~la~~~~~~~~~~~A~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAA-NLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHTTCHHHHHH-HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHH-HHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 999999999999999999 8888877654 356788999999999999999999999988764 3456788899999999
Q ss_pred cCChHHHHHHHHHHhhhcCCCC-----------CHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 234 LGHLKEVGEIIDQWKQSATSDF-----------DISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 234 ~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
.|++++|.+.+++..+... .. +..+|..+..++...|++++|..++++.+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred hccHHHHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999887542 11 57789999999999999999999987654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=6.8e-20 Score=148.71 Aligned_cols=267 Identities=11% Similarity=-0.011 Sum_probs=224.5
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
++..+..+...+...|++++|...|+.+....| +..+|..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456788899999999999999999999988777 78899999999999999999999999999874 4477899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC----ChHhHHHH------------HHHHHccCCHHHHHHHHHHHhhcCCCCCCHHH
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVP----DIFTYNLW------------ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK 152 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (295)
+...|++++|...|++..+. .| +...+..+ ...+...|++++|..+++++... .+.+..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 156 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAEL 156 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHH
Confidence 99999999999999999885 34 34445444 57888999999999999999885 3567888
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHH-------
Q 022531 153 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI------- 225 (295)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~------- 225 (295)
+..+..++...|++++|.. .+.......+ .+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAIS-DLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHH-HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH
Confidence 9999999999999999999 8888877654 367788999999999999999999999988763 22333332
Q ss_pred -----HHHHHHHhcCChHHHHHHHHHHhhhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 226 -----CILSSYLMLGHLKEVGEIIDQWKQSATSDFDI----SACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 226 -----~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
.+...+.+.|++++|.+.+++..+... .+. ..+..+..++...|++++|..++++..+.
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEP--SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 236678999999999999999988652 233 33556788999999999999999999874
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.7e-20 Score=156.08 Aligned_cols=269 Identities=10% Similarity=-0.111 Sum_probs=180.5
Q ss_pred CCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC--------
Q 022531 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN-------- 78 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-------- 78 (295)
.|++..|..+..++.+.|++++|...|+.+....| +..+|..++.++.+.|++++|...|+++...+ +++
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 114 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPML 114 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHH
Confidence 36888888899999999999999999998887767 67788889999999999999999888876654 111
Q ss_pred -----------------------------------------------------------------------HHHHHHHHH
Q 022531 79 -----------------------------------------------------------------------ALMYNEMMT 87 (295)
Q Consensus 79 -----------------------------------------------------------------------~~~~~~li~ 87 (295)
...+..+..
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 223333333
Q ss_pred HHHh---cCCHHHHHHHHHHHHh-----CCC--------CCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHH
Q 022531 88 LYMS---VGQVEKVALVVEEIKR-----KNV--------VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV 151 (295)
Q Consensus 88 ~~~~---~~~~~~a~~~~~~m~~-----~~~--------~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (295)
.+.. .|++++|...|+++.+ ... +.+..++..+...+...|++++|...|+++... . |+..
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--~~~~ 271 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-F--PRVN 271 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-C--CCHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--ccHH
Confidence 3333 6777777777777766 211 112456666777777777888887777777664 2 2266
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHH
Q 022531 152 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY 231 (295)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 231 (295)
++..+..++...|++++|.. .+.......+. +..++..+...+...|++++|...+++..... +.+...+..+...+
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYN-YFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGG-HHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHH-HHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHH
Confidence 66777777777777777777 66666554332 45566666667777777777777777666543 22344555666666
Q ss_pred HhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 232 LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
...|++++|.+.++++.+.. +.+..++..+..++...|++++|...++++.+
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666543 23445566666666666666666666666654
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.2e-19 Score=144.19 Aligned_cols=257 Identities=9% Similarity=-0.034 Sum_probs=218.8
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAK-WTEKAEELFERVKQSNLSFNALMYNEMMT 87 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 87 (295)
+...+..++..+...|++++|..+|+.+....| +...|..+...+...| ++++|...|++..+.. +.+..+|..+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 133 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGH 133 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 345667788889999999999999999988777 7889999999999999 9999999999999875 456788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 88 LYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
.+...|++++|...|++..+.... +...+..+...+...|++++|...++++... .+.+..++..+...+...|+++
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 134 SFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWK 210 (330)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHH
Confidence 999999999999999999886432 4567777999999999999999999999874 4567888999999999999999
Q ss_pred hHHHHHHHHHHHhcC--------CCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHH
Q 022531 168 NAESSTLVEAEKSIT--------QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 239 (295)
Q Consensus 168 ~a~~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 239 (295)
+|.. .+........ ..+..++..+...|...|++++|...+++..+.. +.+...+..+..++...|++++
T Consensus 211 ~A~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 288 (330)
T 3hym_B 211 TAEK-WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFEN 288 (330)
T ss_dssp HHHH-HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHH-HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHH
Confidence 9999 8888876542 2345688899999999999999999999998764 3456778889999999999999
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHH-HccCChH
Q 022531 240 VGEIIDQWKQSATSDFDISACNRLLGAF-SDVGLTE 274 (295)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 274 (295)
|.+.|++..+.. +.+...+..+..++ ...|+.+
T Consensus 289 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 289 AVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHccC--CCchHHHHHHHHHHHHHhCchh
Confidence 999999998754 45777888888888 5666654
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=176.50 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVK---QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 120 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 120 (295)
..+||+||.+|++.|++++|.++|++|. ..|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCH-HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCc------cccHHHHH
Q 022531 121 ISSCAATLNI-DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ------WITYDFLI 193 (295)
Q Consensus 121 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li 193 (295)
|.++++.|+. ++|.++|++|... |+.||..+|++++..+.+.+-++...+ + .....|+ ..+...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrk-----v-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHK-----V-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGG-----G-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHH-----h-CcccCCCCCCcccccchHHHH
Confidence 9999999984 7899999999998 999999999999987776655544443 2 2222222 45555667
Q ss_pred HHHHhcC---------CHHHHHHHHHH
Q 022531 194 ILYAGLG---------NKDKIDQIWKS 211 (295)
Q Consensus 194 ~~~~~~g---------~~~~a~~~~~~ 211 (295)
+.|.+.+ ..++..++|++
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHH
Confidence 7777655 23555555554
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.1e-20 Score=155.26 Aligned_cols=269 Identities=9% Similarity=-0.001 Sum_probs=226.5
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
...+......+.+.|++++|...|+.+....|+..+|..++.++.+.|++++|...|+++.+.+ +.+..+|..+..+|.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4567778899999999999999999999888999999999999999999999999999999875 557889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---------------------------------------------------------
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPD--------------------------------------------------------- 113 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~--------------------------------------------------------- 113 (295)
+.|++++|...|+++.+.+...+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999999999877642110
Q ss_pred ---------------------hHhHHHHHHHHHc---cCCHHHHHHHHHHHhh-----cCCC-------CCCHHHHHHHH
Q 022531 114 ---------------------IFTYNLWISSCAA---TLNIDQVKKFLDEMSC-----DSGG-------SDDWVKYVNLV 157 (295)
Q Consensus 114 ---------------------~~~~~~li~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~l~ 157 (295)
...+......+.. .|++++|..+|+++.. .... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 2223333333333 8999999999999887 2111 23456788899
Q ss_pred HHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCCh
Q 022531 158 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 237 (295)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 237 (295)
.++...|++++|.. .+..+....+. ...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++
T Consensus 245 ~~~~~~~~~~~A~~-~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHE-DIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHH-HHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHH-HHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 99999999999999 89988887655 7788889999999999999999999988764 34567788899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 238 KEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
++|...+++..+.. +.+...+..+...+...|++++|..+++++.+.
T Consensus 321 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 321 DQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp THHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999998854 346778999999999999999999999999874
No 19
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=3.1e-23 Score=181.22 Aligned_cols=149 Identities=11% Similarity=0.024 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccC-----CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLS-----AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE 84 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 84 (295)
...+|++||++|++.|++++|.++|+.|.+. .||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3468999999999999999999999887643 58999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC------HHHHHHHH
Q 022531 85 MMTLYMSVGQ-VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD------WVKYVNLV 157 (295)
Q Consensus 85 li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~ 157 (295)
||.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++.. ++.|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKP--TFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCC--CCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCc--ccCCCCCCcccccchHHHH
Confidence 9999999998 588999999999999999999999999776654 34444444432 44443 44455666
Q ss_pred HHHHhcC
Q 022531 158 NIYITAS 164 (295)
Q Consensus 158 ~~~~~~~ 164 (295)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=4e-19 Score=140.35 Aligned_cols=253 Identities=11% Similarity=-0.005 Sum_probs=192.0
Q ss_pred HHHHhccChhHHHHHHhhcccCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 022531 19 DLMTKVFGIHSGERYFEGLPLSAKT--SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 96 (295)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 96 (295)
.-....|+++.|+..++......|+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 4455678899999988877766563 34566678888899999888876654 2 3567778888888888888999
Q ss_pred HHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHH
Q 022531 97 KVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV 175 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (295)
+|++.++++...+..|+ ...+..+...+...|++++|++.+++ +.+..++..++.++.+.|++++|.+ .++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~-~l~ 154 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARK-ELK 154 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHH-HHH
Confidence 99999998887765554 45566667788889999999988876 3677788888889999999999999 888
Q ss_pred HHHHhcCCCccccHHHH----HHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 176 EAEKSITQRQWITYDFL----IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 176 ~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
.+.... |+. +...+ +..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.|++..+..
T Consensus 155 ~~~~~~--p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQD--EDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHC--TTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhC--cCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 887764 332 22222 233344588999999999888763 5567778888888999999999999999888754
Q ss_pred CCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHhcCCCCC
Q 022531 252 TSDFDISACNRLLGAFSDVGLTEK-ANEFHMLLLQKNCAPT 291 (295)
Q Consensus 252 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g~~p~ 291 (295)
+.+..++..++..+...|+.++ +.++++++++ ..|+
T Consensus 231 --p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~ 267 (291)
T 3mkr_A 231 --SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRS 267 (291)
T ss_dssp --TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTT
T ss_pred --CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCC
Confidence 3567788888888888888865 5688888876 4444
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=1.9e-19 Score=146.86 Aligned_cols=259 Identities=9% Similarity=-0.102 Sum_probs=207.4
Q ss_pred HHHhccChhHHHH-HHhhcccCCC-----CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 022531 20 LMTKVFGIHSGER-YFEGLPLSAK-----TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 93 (295)
Q Consensus 20 ~~~~~~~~~~A~~-~~~~~~~~~p-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 93 (295)
.+...|++++|.+ .|+......| +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445678999998 8887665533 35678899999999999999999999999875 567889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHH---------------HHH
Q 022531 94 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN---------------LVN 158 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~ 158 (295)
++++|...|+++.+... .+..++..+...+...|++++|...++++.... +.+...+.. .+.
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTH
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 99999999999988643 367889999999999999999999999998752 233333221 233
Q ss_pred HHHhcCchhhHHHHHHHHHHHhcCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCCh
Q 022531 159 IYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 237 (295)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 237 (295)
.+...|++++|.. .+..+....+.. +..++..+...|...|++++|+..++++.... +.+...+..+...+...|++
T Consensus 190 ~~~~~~~~~~A~~-~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 190 SLLSDSLFLEVKE-LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHhhcccHHHHHH-HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCH
Confidence 3448999999999 888888766543 56788899999999999999999999988764 34567888999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 238 KEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
++|.+.|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+.
T Consensus 268 ~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 268 EEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999998854 457888999999999999999999999998763
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=4.2e-20 Score=150.84 Aligned_cols=236 Identities=8% Similarity=-0.112 Sum_probs=197.2
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
+...|..+...+.+.|++++|..+|+++.+.. +.+..+|..+...|...|++++|+..|++..+... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 56679999999999999999999999999875 56789999999999999999999999999988632 35788999999
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCH----------HHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC-ccccHHH
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDW----------VKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDF 191 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 191 (295)
+|...|++++|...|+++.... +.+. ..+..+...+.+.|++++|.. .+.++....+.. +..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE-LYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHH-HHHHHHHHSCSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHH-HHHHHHHhCcCccCHHHHHH
Confidence 9999999999999999988742 1122 233445889999999999999 899888876542 5778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccC
Q 022531 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG 271 (295)
Q Consensus 192 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 271 (295)
+...|...|++++|++.|++..+.. +.+..++..+..+|...|++++|.+.|++..+.. +.+..+|..+..+|...|
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCC
Confidence 9999999999999999999998764 4467889999999999999999999999998864 356888999999999999
Q ss_pred ChHHHHHHHHHHHhc
Q 022531 272 LTEKANEFHMLLLQK 286 (295)
Q Consensus 272 ~~~~a~~~~~~m~~~ 286 (295)
++++|...|+++++.
T Consensus 296 ~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 296 AYREAVSNFLTALSL 310 (365)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999863
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=8.8e-19 Score=150.10 Aligned_cols=265 Identities=10% Similarity=-0.025 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
...+..+...+.+.|++++|...|+.+....| +..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 34567777788888888888888888877766 77788888888888888888888888887765 45677788888888
Q ss_pred HhcCCHHHHHHHHHHH----------------------------------------------------------------
Q 022531 90 MSVGQVEKVALVVEEI---------------------------------------------------------------- 105 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m---------------------------------------------------------------- 105 (295)
...|++++|...|+.+
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 8888888887766432
Q ss_pred ---------------------------------------------HhCCCCCC--------hHhHHHHHHHHHccCCHHH
Q 022531 106 ---------------------------------------------KRKNVVPD--------IFTYNLWISSCAATLNIDQ 132 (295)
Q Consensus 106 ---------------------------------------------~~~~~~p~--------~~~~~~li~~~~~~~~~~~ 132 (295)
.+. .|+ ..++..+...+...|++++
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 111 122 1235555566777888888
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHH
Q 022531 133 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL 212 (295)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 212 (295)
|...|+++... .|+..++..+...+...|++++|.. .+.......+. +..+|..+...+...|++++|.+.+++.
T Consensus 262 A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 262 AQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFK-FFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHH-HHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888875 2457778888888888899999988 88877766543 5677888888888999999999999888
Q ss_pred HhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 213 RMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 213 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
.... +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+..++...|++++|...|+++.+.
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7764 2345677788888999999999999999888764 345677888889999999999999999888764
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=2.7e-17 Score=129.91 Aligned_cols=246 Identities=9% Similarity=-0.009 Sum_probs=196.9
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF-NALMYNEMMTLYMS 91 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~ 91 (295)
....+..+|...|+++.|...++.. ..|+..++..+...+...++.++|++.++++...+..| +...+..+...+.+
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 4456789999999999999988763 34688899999999999999999999999998876444 56777888899999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHH---HHHHHHHHHhcCchhh
Q 022531 92 VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK---YVNLVNIYITASHLVN 168 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ 168 (295)
.|++++|++.+++ +.+..++..++..+.+.|++++|.+.|+++... . |+... ....+..+...|++++
T Consensus 114 ~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~--p~~~~~~l~~a~~~l~~~~~~~~e 184 (291)
T 3mkr_A 114 DQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-D--EDATLTQLATAWVSLAAGGEKLQD 184 (291)
T ss_dssp TTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--TTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred CCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--cCcHHHHHHHHHHHHHhCchHHHH
Confidence 9999999999987 457888999999999999999999999999986 2 44321 1233444555699999
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHH-HHHHHHHH
Q 022531 169 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE-VGEIIDQW 247 (295)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~ 247 (295)
|.. .++++....+ .+...++.+..++...|++++|++.|++..... +-+..++..++..+...|+.++ +.++++++
T Consensus 185 A~~-~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 185 AYY-IFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHH-HHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999 9999988754 478889999999999999999999999988764 3467788889999999999876 67899998
Q ss_pred hhhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 022531 248 KQSATSDFDISACNRLLGAFSDVGLTEKANE 278 (295)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 278 (295)
.+.. |+... +.+...+.+.++++..
T Consensus 262 ~~~~---P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 262 KDAH---RSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHC---TTCHH---HHHHHHHHHHHHHHHH
T ss_pred HHhC---CCChH---HHHHHHHHHHHHHHHH
Confidence 8754 33322 3344455555555543
No 25
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.1e-17 Score=143.18 Aligned_cols=269 Identities=10% Similarity=-0.038 Sum_probs=219.0
Q ss_pred CCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHH-----------------
Q 022531 9 LSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERV----------------- 70 (295)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m----------------- 70 (295)
.++..|..+..++.+.|++++|.+.|+.+....| +..++..+..++...|++++|...|+.+
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 136 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 3677888999999999999999999999888767 6888899999999999888888777432
Q ss_pred --------------------------------------------------------------------------------
Q 022531 71 -------------------------------------------------------------------------------- 70 (295)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (295)
T Consensus 137 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 216 (537)
T 3fp2_A 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216 (537)
T ss_dssp HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence
Q ss_pred ------------HhCCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCH
Q 022531 71 ------------KQSNLSFN--------ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 130 (295)
Q Consensus 71 ------------~~~~~~p~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 130 (295)
.+. .|+ ..++..+...+...|++++|...|++..+. .|+..++..+...+...|++
T Consensus 217 ~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 111 122 224666667788899999999999999885 46678899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHH
Q 022531 131 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 210 (295)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 210 (295)
++|...++++... .+.+..++..+..++...|++++|.. .+.......+. +...|..+...+...|++++|...++
T Consensus 293 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 293 QEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKE-DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFN 368 (537)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999875 35678889999999999999999999 89888876644 56788999999999999999999999
Q ss_pred HHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCC----CHHHHHHHHHHHHcc----------CChHHH
Q 022531 211 SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF----DISACNRLLGAFSDV----------GLTEKA 276 (295)
Q Consensus 211 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~----------g~~~~a 276 (295)
++.+.. +.+...+..+...+...|++++|.+.|+++.+.....+ ....+..+..++... |++++|
T Consensus 369 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 369 ETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 998774 34566788899999999999999999999876432112 122244455677777 999999
Q ss_pred HHHHHHHHhc
Q 022531 277 NEFHMLLLQK 286 (295)
Q Consensus 277 ~~~~~~m~~~ 286 (295)
...|+++.+.
T Consensus 448 ~~~~~~a~~~ 457 (537)
T 3fp2_A 448 IKLLTKACEL 457 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=1.2e-17 Score=133.76 Aligned_cols=235 Identities=9% Similarity=-0.074 Sum_probs=197.2
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
+...+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45677888999999999999999999998864 4578899999999999999999999999998863 236778999999
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHH--------------HH-HHHhcCchhhHHHHHHHHHHHhcCCCccc
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL--------------VN-IYITASHLVNAESSTLVEAEKSITQRQWI 187 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (295)
.+...|++++|...++++.... +.+...+..+ .. .+...|++++|.. .+..+....+. +..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~ 173 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT-LLHAALEMNPN-DAQ 173 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHH-HHHHHHHHSTT-CHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH-HHHHHHhhCCC-CHH
Confidence 9999999999999999998752 3333333333 22 3778899999999 88888776644 677
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 022531 188 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF 267 (295)
Q Consensus 188 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (295)
++..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..+|..+..+|
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 88999999999999999999999988764 3456788899999999999999999999998864 45678899999999
Q ss_pred HccCChHHHHHHHHHHHhc
Q 022531 268 SDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 268 ~~~g~~~~a~~~~~~m~~~ 286 (295)
...|++++|...++++.+.
T Consensus 251 ~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.7e-17 Score=128.33 Aligned_cols=224 Identities=9% Similarity=-0.046 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hHhHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV--PD----IFTYN 118 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~----~~~~~ 118 (295)
..|..+...+...|++++|...|++..+.. .+..+|..+..++...|++++|...+++..+.... |+ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 455556666666666666666666666554 45566666666666666666666666665543111 11 35566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHh
Q 022531 119 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG 198 (295)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 198 (295)
.+...+...|++++|...|+++... .|+. ..+.+.|++++|.. .+.......+ .+...+..+...+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~-~~~~~~~~~~-~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELK-KAEAEAYVNP-EKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHH-HHHHHHHCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHH-HHHHHHHcCc-chHHHHHHHHHHHHH
Confidence 6666666666666666666666653 1332 33445566666666 5555544332 234455566666666
Q ss_pred cCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 022531 199 LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE 278 (295)
Q Consensus 199 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 278 (295)
.|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...|..+..++...|++++|..
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 666666666666665543 2345556666666666666666666666666543 2345566666666666666666666
Q ss_pred HHHHHHh
Q 022531 279 FHMLLLQ 285 (295)
Q Consensus 279 ~~~~m~~ 285 (295)
.+++..+
T Consensus 229 ~~~~a~~ 235 (258)
T 3uq3_A 229 TLDAART 235 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.9e-19 Score=146.28 Aligned_cols=221 Identities=10% Similarity=0.065 Sum_probs=82.4
Q ss_pred hccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022531 23 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 102 (295)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 102 (295)
+.|++++|.++++++.. ..+|+.|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|++++
T Consensus 15 ~~~~ld~A~~fae~~~~----~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 56778888888888733 348888888888888888888888642 46778888888888888888888877
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcC
Q 022531 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 182 (295)
Q Consensus 103 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (295)
+..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|.. +|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~-~Y~~a----- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKL-LYNNV----- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT--------CC----------------CTTTHHH-HHHHT-----
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHH-HHHHh-----
Confidence 666553 4456778888888888888888777663 2566688888888888888888888 77644
Q ss_pred CCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHH
Q 022531 183 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 262 (295)
Q Consensus 183 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 262 (295)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..|+. ...
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~--l~~ 212 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADE--LEE 212 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHH--HHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhh--HHH
Confidence 47888888888888888888888876 266788888888888888888865554322 12333 446
Q ss_pred HHHHHHccCChHHHHHHHHHHHh
Q 022531 263 LLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 263 l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
++..|.+.|++++|..+++..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhC
Confidence 78888888888888888887764
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=3.3e-17 Score=123.85 Aligned_cols=199 Identities=17% Similarity=0.072 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 022531 77 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 156 (295)
Q Consensus 77 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 156 (295)
++...+..+...+.+.|++++|+..|++..+... .+...+..+...+.+.|++++|+..|++..+. .|.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 3444555555555555555555555555555322 13445555555555555555555555555543 13344455555
Q ss_pred HHHHHhc-----------CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHH
Q 022531 157 VNIYITA-----------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 225 (295)
Q Consensus 157 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 225 (295)
..++.+. |++++|.. .+.+..+..+. +...|..+...+...|++++|+..|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALS-VLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHH-HHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 5555555 77777777 77766665443 55667777777777888888888887777765 5666777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 226 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 226 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
.+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77778888888888888888877754 3466677777788888888888887777654
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=1.8e-17 Score=125.37 Aligned_cols=207 Identities=12% Similarity=-0.019 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022531 9 LSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT 87 (295)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 87 (295)
+++..+..+...+.+.|++++|...|+......| +...|..+..++.+.|++++|+..|++..+.+ |.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3444455555555555555555555555544444 44555555555555555555555555555443 233445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 88 LYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
.+...+ ... +. .....|++++|+..|++..+. .|.+..++..+..++...|+++
T Consensus 82 ~~~~~~------------~~~---~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 82 AYVALY------------RQA---ED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHH------------HTC---SS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhh------------hhh---hh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChH
Confidence 555440 000 00 000005555555555554442 1233444445555555555555
Q ss_pred hHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 168 NAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
+|.. .+++..+.. .+...+..+..+|...|++++|+..|++..+.. +.+...+..+...+.+.|++++|.+.|++
T Consensus 136 ~A~~-~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 136 KAEA-SLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHH-HHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHH-HHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555 444444433 344444455555555555555555555544432 12333444455555555555555555544
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.4e-17 Score=126.03 Aligned_cols=227 Identities=11% Similarity=-0.028 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC--CCCC----HHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFN----ALMYNE 84 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~~~~~ 84 (295)
...|..+...+...|++++|...|+......++...|..+..++...|++++|...|++..+.. ..|+ ..+|..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 4678889999999999999999999876655778899999999999999999999999988653 1112 578999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (295)
+...+...|++++|...|++..+. .|+. ..+.+.|++++|...++++... .+.+..++..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence 999999999999999999999884 4553 3466778899999999999874 3556778889999999999
Q ss_pred chhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 022531 165 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 244 (295)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 244 (295)
++++|.. .+.......+. +..+|..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 154 ~~~~A~~-~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVK-AYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHH-HHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999 89988876644 67789999999999999999999999998764 345778888999999999999999999
Q ss_pred HHHhhhc
Q 022531 245 DQWKQSA 251 (295)
Q Consensus 245 ~~~~~~~ 251 (295)
++..+..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9987643
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=8.3e-17 Score=125.70 Aligned_cols=248 Identities=12% Similarity=0.016 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF--NALMYNEMMT 87 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~ 87 (295)
+..+......+...|++++|...|+...+..| +...+..+..++...|++++|+..|++..+..-.| ...+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 44555667777888888888888888777766 55678888888888888888888888887732111 1234778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 88 LYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
.+...|++++|++.|++..+... .+..++..+...+...|++++|...|++.... .+.+..++..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777532 24567777888888888888888888887764 3455666666662333445888
Q ss_pred hHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCC---HHHHHHHHHHHHhcc-CCCC------HHhHHHHHHHHHhcCCh
Q 022531 168 NAESSTLVEAEKSITQRQWITYDFLIILYAGLGN---KDKIDQIWKSLRMTK-QKMT------SRNYICILSSYLMLGHL 237 (295)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~~~~ 237 (295)
+|.+ .+....+..+. +...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...|...|++
T Consensus 160 ~A~~-~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 160 KADS-SFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHH-HHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHH-HHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 8888 77777665433 45566666667777676 667777777665432 1122 13566677777778888
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 022531 238 KEVGEIIDQWKQSATSDFDISACNRLLG 265 (295)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 265 (295)
++|.+.|++..+.. +.+...+..+..
T Consensus 238 ~~A~~~~~~al~~~--p~~~~a~~~l~~ 263 (272)
T 3u4t_A 238 VKADAAWKNILALD--PTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHC-
T ss_pred HHHHHHHHHHHhcC--ccHHHHHHHhhh
Confidence 88888888777744 234544444443
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=9.5e-17 Score=125.37 Aligned_cols=241 Identities=10% Similarity=-0.003 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hHhHHHHH
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD--IFTYNLWI 121 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li 121 (295)
...+......+...|++++|+..|++..+.. +.+..++..+..+|...|++++|+..+++..+.+..|+ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456677888999999999999999999875 34566899999999999999999999999998542222 23488899
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCC
Q 022531 122 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 201 (295)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 201 (295)
..+...|++++|...|++.... .+.+..++..+..+|...|++++|.. .+.+..... +.+...|..+...+...++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQ-YMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHH-HHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHH-HHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999885 34567889999999999999999999 887766553 2355667777734445569
Q ss_pred HHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCC---hHHHHHHHHHHhhhcCCCCC------HHHHHHHHHHHHccCC
Q 022531 202 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH---LKEVGEIIDQWKQSATSDFD------ISACNRLLGAFSDVGL 272 (295)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~ 272 (295)
+++|.+.|++..+.. +.+...+..+..++...|+ .++|...+++..+.....|+ ..+|..+...|...|+
T Consensus 158 ~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 999999999998764 3346677778888888888 88899999988765322233 2578889999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCC
Q 022531 273 TEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 273 ~~~a~~~~~~m~~~g~~p~~ 292 (295)
+++|.++|+++++ +.|+.
T Consensus 237 ~~~A~~~~~~al~--~~p~~ 254 (272)
T 3u4t_A 237 KVKADAAWKNILA--LDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHh--cCccH
Confidence 9999999999987 44554
No 34
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.78 E-value=2.9e-16 Score=118.85 Aligned_cols=204 Identities=13% Similarity=0.025 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
+...|..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|.+.|++..+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 45566666666666666666666666666543 33456666666666666666666666666665422 24555666666
Q ss_pred HHHcc-CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCC
Q 022531 123 SCAAT-LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 201 (295)
Q Consensus 123 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 201 (295)
.+... |++++|...++++...+..+.+..++..+..++...|++++|.. .+.......+. +...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA-YLKRSLAAQPQ-FPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-CchHHHHHHHHHHHcCC
Confidence 66666 67777777666666521122234556666666667777777776 66665554432 45556666666677777
Q ss_pred HHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 202 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
+++|.+.+++........+...+..+...+...|+.+.|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777776655432134555556666666777777777777766553
No 35
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.4e-18 Score=141.24 Aligned_cols=224 Identities=7% Similarity=0.026 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 9 LSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
+++.+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++...+. .+++.+.+.++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~ 103 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHH
Confidence 44568999999999999999999999653 67779999999999999999999977766664 4568889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhh
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 168 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (295)
|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+ ..|..++.++.+.|++++
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp -----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHH
Confidence 999999999998884 377789999999999999999999999976 368899999999999999
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 169 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
|.+ .+.++ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|.+++|..+++...
T Consensus 167 AVe-a~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 167 AVD-GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHH-HHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHH-HHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999 77765 3678999999999999999999665543 22344445578899999999999999998876
Q ss_pred hhcCCCCCHHHHHHHHHHHHc
Q 022531 249 QSATSDFDISACNRLLGAFSD 269 (295)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~~~~ 269 (295)
... +-....|+-|..+|++
T Consensus 235 ~le--~ah~~~ftel~il~~k 253 (449)
T 1b89_A 235 GLE--RAHMGMFTELAILYSK 253 (449)
T ss_dssp TST--TCCHHHHHHHHHHHHT
T ss_pred CCc--HHHHHHHHHHHHHHHh
Confidence 533 3344555555555544
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=3.6e-16 Score=120.72 Aligned_cols=203 Identities=10% Similarity=-0.046 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 123 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 123 (295)
...|..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|.+.|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 5677888888888888888888888887664 44677888888888888888888888888877532 256677778888
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHH
Q 022531 124 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD 203 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 203 (295)
+...|++++|..+++++...+..+.+..++..+..++...|++++|.. .+.......+. +...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE-YFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 888888888888888887621123356677788888888888888888 77777665533 5667778888888888888
Q ss_pred HHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 204 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 204 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
+|...++++.+.. +.+...+..+...+...|+.++|.++++++.+..
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888888877653 3455667778888888888988888888887754
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=3.9e-15 Score=116.47 Aligned_cols=222 Identities=12% Similarity=-0.040 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAG----AKWTEKAEELFERVKQSNLSFNALMYNEMM 86 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 86 (295)
+..+..+...+...|++++|...|+...+ ..+...+..+...+.. .+++++|...|++..+.+ +..++..+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 34455555555555566666655555554 1234455555555555 555566666665555554 455555555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 022531 87 TLYMS----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 158 (295)
Q Consensus 87 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (295)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 55555 555555655555555542 44455555555555 55555555555555543 2 3344445555
Q ss_pred HHHh----cCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCCHHhHHHHHHH
Q 022531 159 IYIT----ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILSS 230 (295)
Q Consensus 159 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 230 (295)
.|.. .+++++|.. .+++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+...
T Consensus 155 ~~~~~~~~~~~~~~A~~-~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALA-SYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHTSSSCCCHHHHHH-HHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHH-HHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 5555 555555555 555444432 23344445555555 555555555555554432 13344445555
Q ss_pred HHh----cCChHHHHHHHHHHhhh
Q 022531 231 YLM----LGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 231 ~~~----~~~~~~A~~~~~~~~~~ 250 (295)
|.. .+++++|.+.|++..+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHc
Confidence 555 55555555555555543
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=1.5e-15 Score=114.88 Aligned_cols=202 Identities=11% Similarity=-0.008 Sum_probs=140.8
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
++..+..+...+...|++++|...|+.+....| +...|..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 355666777777777777777777777766655 56677777777777777777777777777653 3456677777777
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 022531 89 YMSV-GQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 89 ~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++... .+.+..++..+..++.+.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 7777 777777777777776322332 456667777777777777777777777664 234566677777777777777
Q ss_pred hhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
++|.. .+.......+..+...+..+...+...|+.+++..+++.+...
T Consensus 164 ~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADY-YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHH-HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777 7776666554235555666666677777777777777776554
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.77 E-value=2.5e-16 Score=128.53 Aligned_cols=249 Identities=7% Similarity=-0.011 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCc-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKW-TEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
...|..+...+.+.|++++|+..|+.+....| +...|+.+..++...|+ +++|+..|++.++.+ +-+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45678888899999999999999999988877 78899999999999997 999999999999875 4578899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-cCchh
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT-ASHLV 167 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 167 (295)
+...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..|+++... .+.+..+|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999986433 6788999999999999999999999999985 35678899999999999 66657
Q ss_pred hHH-----HHHHHHHHHhcCCCccccHHHHHHHHHhcC--CHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcC-----
Q 022531 168 NAE-----SSTLVEAEKSITQRQWITYDFLIILYAGLG--NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLG----- 235 (295)
Q Consensus 168 ~a~-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----- 235 (295)
+|. . .+.+.....+. +...|+.+...+...| +.++|++.+.++ +. ...+...+..+..+|.+.|
T Consensus 253 eA~~~~el~-~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQ-YTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHH-HHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 773 6 67777665543 6678888888888888 689999999887 33 2445567778888888864
Q ss_pred ----ChHHHHHHHHHH-hhhcCCCCCHHHHHHHHHHHHc
Q 022531 236 ----HLKEVGEIIDQW-KQSATSDFDISACNRLLGAFSD 269 (295)
Q Consensus 236 ----~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~ 269 (295)
..++|.++|+++ .+.. +.....|..+...+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D--P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD--TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHH
Confidence 358999999998 5533 2344566666655543
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=1.2e-15 Score=117.80 Aligned_cols=199 Identities=8% Similarity=0.001 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 022531 80 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 159 (295)
Q Consensus 80 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (295)
..|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++... .+.+..++..+..+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 344444445555555555555555544432 113344444444555555555555555554442 12234444445555
Q ss_pred HHhcCchhhHHHHHHHHHHHhcCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChH
Q 022531 160 YITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK 238 (295)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 238 (295)
|...|++++|.+ .+..+......| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQ-RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHH-HHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHH-HHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 555555555555 444443311111 23344444444555555555555555444432 122334444455555555555
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 239 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+|.+.++++.+.. +.+...+..+...+...|+.++|.++++++.+
T Consensus 193 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 193 PARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555544422 23344444444555555555555555555443
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.76 E-value=9.5e-17 Score=125.48 Aligned_cols=246 Identities=9% Similarity=-0.027 Sum_probs=192.2
Q ss_pred HhccChhHHHHHHhhcccCC----C-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 022531 22 TKVFGIHSGERYFEGLPLSA----K-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 96 (295)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~----p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 96 (295)
...|++++|...|+.+.... | +..+|..+...+...|++++|...|+++.+.+ +.+..+|..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 34688999999999988762 2 57789999999999999999999999999875 457899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 022531 97 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 176 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (295)
+|.+.|++..+... .+..++..+...+.+.|++++|...|+++... .|+.......+..+...|++++|.. .+..
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~ 169 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKE-VLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHH-HHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHH-HHHH
Confidence 99999999988632 35788999999999999999999999999875 2444444445556677799999999 8877
Q ss_pred HHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCC
Q 022531 177 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM---TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS 253 (295)
Q Consensus 177 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 253 (295)
.....+. +...+ .++..+...++.++|.+.+++........ +...+..+...|.+.|++++|...|++.....
T Consensus 170 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 245 (275)
T 1xnf_A 170 HFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 245 (275)
T ss_dssp HHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence 7665533 44444 46677788888999999998876542211 14667889999999999999999999998743
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHH
Q 022531 254 DFDISACNRLLGAFSDVGLTEKANEFH 280 (295)
Q Consensus 254 ~~~~~~~~~l~~~~~~~g~~~~a~~~~ 280 (295)
|+. +.....++...|++++|.+.+
T Consensus 246 -p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 -VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CTT--CHHHHHHHHHHHHHHHC----
T ss_pred -chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 422 233456778889999888766
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=1.4e-16 Score=122.12 Aligned_cols=212 Identities=13% Similarity=0.026 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|+..|++..+... .+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 45566666666666777777777777666643 34566666666677777777777777776665422 24556666666
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCH
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 202 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 202 (295)
.+...|++++|...++++... .+.+..++..+..++.+.|++++|.. .+.+.....+. +...+..+...+...|++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALP-YLQRAVELNEN-DTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCc-cHHHHHHHHHHHHHcCCH
Confidence 677777777777777776654 23455666667777777777777777 66666554432 455666666777777777
Q ss_pred HHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHH
Q 022531 203 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL 263 (295)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 263 (295)
++|.+.+++..... +.+...+..+..+|...|++++|.+.++++.+.. +.+...+..+
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~ 233 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ--PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC--cchHHHHHHH
Confidence 77777777766553 2345566677777777777777777777776643 2344444433
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.75 E-value=8.6e-15 Score=114.48 Aligned_cols=224 Identities=13% Similarity=-0.015 Sum_probs=197.4
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHhHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS----VGQVEKVALVVEEIKRKNVVPDIFTYN 118 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 118 (295)
+..++..+...+...|++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 67788999999999999999999999999855 67889999999999 999999999999999875 678888
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCchhhHHHHHHHHHHHhcCCCccccHH
Q 022531 119 LWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQRQWITYD 190 (295)
Q Consensus 119 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (295)
.+...|.. .+++++|...|++.... + +..++..+...|.. .+++++|.. .+++..+.+ +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~-~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVE-YFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHH-HHHHHHHTT---CHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHH-HHHHHHhcC---cHHHHH
Confidence 89999999 99999999999999886 3 67888899999999 999999999 888887755 456777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHhhhcCCCCCHHHHHH
Q 022531 191 FLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKEVGEIIDQWKQSATSDFDISACNR 262 (295)
Q Consensus 191 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 262 (295)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 223 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFN 223 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHHH
Confidence 88888888 999999999999988764 45677788999999 999999999999988853 2567888
Q ss_pred HHHHHHc----cCChHHHHHHHHHHHhcC
Q 022531 263 LLGAFSD----VGLTEKANEFHMLLLQKN 287 (295)
Q Consensus 263 l~~~~~~----~g~~~~a~~~~~~m~~~g 287 (295)
+...|.. .+++++|...|++..+.|
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9999999 999999999999998765
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=2.9e-16 Score=120.45 Aligned_cols=202 Identities=10% Similarity=0.026 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 022531 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM 86 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 86 (295)
++++..|..+...+...|++++|...|+.+....| +...+..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34455666677777777777777777777766655 56677777777777777777777777776653 34566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 022531 87 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
..+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++... .+.+..++..+..++.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 777777777777777777766432 25566667777777777777777777777664 234566677777777777777
Q ss_pred hhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 167 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
++|.. .+.......+ .+..++..+...|...|++++|.+.++++.+.
T Consensus 176 ~~A~~-~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALS-QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHH-HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777 6666655543 24556667777777777777777777777664
No 45
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.75 E-value=1.5e-16 Score=131.81 Aligned_cols=273 Identities=15% Similarity=0.033 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCCC-H----HHHHHHHHHHHccCcHHHHHHHHHHHHhC----C-CCCCHHH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-S----ETYTALLHLYAGAKWTEKAEELFERVKQS----N-LSFNALM 81 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~ 81 (295)
..+..+...+...|++++|...|+.+....|+ . ..|..+...+...|++++|...|++..+. + .+....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34556777889999999999999998887663 3 57889999999999999999999987653 1 1224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChHhHHHHHHHHHccCC-----------------HHHHHHHHHH
Q 022531 82 YNEMMTLYMSVGQVEKVALVVEEIKRK----NVV-PDIFTYNLWISSCAATLN-----------------IDQVKKFLDE 139 (295)
Q Consensus 82 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~ 139 (295)
+..+...|...|++++|...|++..+. +-. ....++..+...+...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 889999999999999999999987653 111 234578888889999999 9999999888
Q ss_pred Hhhc----CCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC-c----cccHHHHHHHHHhcCCHHHHHHHHH
Q 022531 140 MSCD----SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-Q----WITYDFLIILYAGLGNKDKIDQIWK 210 (295)
Q Consensus 140 ~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~ 210 (295)
.... ...+....++..+...|...|++++|.. .+.+........ + ..++..+...|...|++++|.+.++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE-HHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 6542 1112234578889999999999999999 888776644321 1 2377888899999999999999999
Q ss_pred HHHhccCC-C----CHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCC----CCHHHHHHHHHHHHccCChHHHHHHHH
Q 022531 211 SLRMTKQK-M----TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD----FDISACNRLLGAFSDVGLTEKANEFHM 281 (295)
Q Consensus 211 ~m~~~~~~-~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~ 281 (295)
+....... . ....+..+...|...|++++|.+.+++........ ....++..+..+|...|++++|..+++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 87654211 1 13567788999999999999999999886632111 124578889999999999999999999
Q ss_pred HHHh
Q 022531 282 LLLQ 285 (295)
Q Consensus 282 ~m~~ 285 (295)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.74 E-value=4.8e-16 Score=128.23 Aligned_cols=278 Identities=15% Similarity=0.076 Sum_probs=214.6
Q ss_pred CCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-C----HHHHHHHHHHHHccCcHHHHHHHHHHHHhC----CCCC
Q 022531 7 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-T----SETYTALLHLYAGAKWTEKAEELFERVKQS----NLSF 77 (295)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p 77 (295)
.......+......+...|++++|...|+......| + ..+|..+...+...|++++|...|++.... +-.|
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345666778888999999999999999999887766 3 367889999999999999999999986542 2122
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hHhHHHHHHHHHccCC--------------------HH
Q 022531 78 -NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PD----IFTYNLWISSCAATLN--------------------ID 131 (295)
Q Consensus 78 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~--------------------~~ 131 (295)
...++..+...|...|++++|...+++..+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2557888999999999999999999987653110 11 4478888889999999 99
Q ss_pred HHHHHHHHHhhc---CC-CCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC-c----cccHHHHHHHHHhcCCH
Q 022531 132 QVKKFLDEMSCD---SG-GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-Q----WITYDFLIILYAGLGNK 202 (295)
Q Consensus 132 ~a~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~ 202 (295)
+|...+++.... .+ .+....++..+...|...|++++|.. .+.+........ + ..++..+...|...|++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI-AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 999998876542 11 12224568888999999999999999 888776543221 1 23778888999999999
Q ss_pred HHHHHHHHHHHhccCC-CC----HHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCC----HHHHHHHHHHHHccCCh
Q 022531 203 DKIDQIWKSLRMTKQK-MT----SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD----ISACNRLLGAFSDVGLT 273 (295)
Q Consensus 203 ~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 273 (295)
++|...+++....... ++ ..++..+...|...|++++|.+.+++..+.....++ ..++..+..+|...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 9999999987643211 11 346778899999999999999999988664221122 55788899999999999
Q ss_pred HHHHHHHHHHHh
Q 022531 274 EKANEFHMLLLQ 285 (295)
Q Consensus 274 ~~a~~~~~~m~~ 285 (295)
++|...+++..+
T Consensus 324 ~~A~~~~~~al~ 335 (406)
T 3sf4_A 324 DQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.74 E-value=4e-16 Score=125.15 Aligned_cols=274 Identities=14% Similarity=0.070 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCCC-----HHHHHHHHHHHHccCcHHHHHHHHHHHHhC----CCCC-CHHH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-----SETYTALLHLYAGAKWTEKAEELFERVKQS----NLSF-NALM 81 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~ 81 (295)
..+......+...|++++|...|+.+....|+ ...+..+...+...|++++|...+++..+. +-.| ...+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34556677889999999999999998877663 467889999999999999999999987543 2112 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hHhHHHHHHHHHccCC--------------------HHHHHHH
Q 022531 82 YNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPD----IFTYNLWISSCAATLN--------------------IDQVKKF 136 (295)
Q Consensus 82 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 136 (295)
+..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88999999999999999999998765311 112 3478888888999999 9999999
Q ss_pred HHHHhhc----CCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC-----ccccHHHHHHHHHhcCCHHHHHH
Q 022531 137 LDEMSCD----SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-----QWITYDFLIILYAGLGNKDKIDQ 207 (295)
Q Consensus 137 ~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~ 207 (295)
+++.... ...+....++..+...+...|++++|.. .+.+........ ...++..+...+...|++++|.+
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI-AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8876542 1112234577888999999999999999 887776543221 12377888889999999999999
Q ss_pred HHHHHHhccCC-CC----HHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCC----CHHHHHHHHHHHHccCChHHHHH
Q 022531 208 IWKSLRMTKQK-MT----SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF----DISACNRLLGAFSDVGLTEKANE 278 (295)
Q Consensus 208 ~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~ 278 (295)
.+++....... .+ ..++..+...+...|++++|.+.+++......... ...++..+..+|...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99987543211 11 34567788999999999999999998865321111 24478889999999999999999
Q ss_pred HHHHHHhc
Q 022531 279 FHMLLLQK 286 (295)
Q Consensus 279 ~~~~m~~~ 286 (295)
++++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998864
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=2.4e-15 Score=122.74 Aligned_cols=233 Identities=11% Similarity=0.042 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChHhHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ-VEKVALVVEEIKRKNVVPDIFTYNLWI 121 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li 121 (295)
+...|+.+...+.+.|++++|+..|++.++.. +-+..+|+.+..++...|+ +++|+..|++..+.... +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 46789999999999999999999999999875 4568899999999999997 99999999999986433 678899999
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHh-cC
Q 022531 122 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG-LG 200 (295)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g 200 (295)
.++...|++++|+..|+++... .+.+..+|..+..++.+.|++++|.. .++++....+. +...|+.+..++.. .|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~-~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQ-YVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 9999999999999999999985 36688899999999999999999999 99998887654 77889999999998 66
Q ss_pred CHHHH-----HHHHHHHHhccCCCCHHhHHHHHHHHHhcC--ChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccC--
Q 022531 201 NKDKI-----DQIWKSLRMTKQKMTSRNYICILSSYLMLG--HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG-- 271 (295)
Q Consensus 201 ~~~~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 271 (295)
..++| ++.+++..... +-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhcc
Confidence 65777 48888877753 234567888888888888 689999999887 42 2457788899999998874
Q ss_pred -------ChHHHHHHHHHH-Hh
Q 022531 272 -------LTEKANEFHMLL-LQ 285 (295)
Q Consensus 272 -------~~~~a~~~~~~m-~~ 285 (295)
..++|.++++++ .+
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHHHHH
Confidence 358999999998 55
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=7.8e-15 Score=114.53 Aligned_cols=224 Identities=13% Similarity=-0.043 Sum_probs=180.4
Q ss_pred HccCcHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHH
Q 022531 55 AGAKWTEKAEELFERVKQSNL---SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 131 (295)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 131 (295)
...|++++|+..|+++.+... +.+..+|..+...+...|++++|...|++..+... .+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 346889999999999998632 12467889999999999999999999999988643 36788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHH
Q 022531 132 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS 211 (295)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 211 (295)
+|...|+++... .+.+..++..+..+|.+.|++++|.. .+..+....+. .......+..+...|++++|...+++
T Consensus 95 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 95 AAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQD-DLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999985 34567889999999999999999999 89888776543 33344444555777999999999988
Q ss_pred HHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCC-C-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 212 LRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS-D-FDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 212 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
..... +++...+ .++..+...++.++|.+.+......... . .+..+|..+..+|...|++++|...|+++++.
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 77653 3344344 4777888888999999999988664310 0 12578899999999999999999999999874
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=6.3e-14 Score=111.59 Aligned_cols=235 Identities=11% Similarity=0.013 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHhc----cCh----hHHHHHHhhcccCCC-CHHHHHHHHHHHHc-------cCcH-------HHHHHHH
Q 022531 11 DSDYATRIDLMTKV----FGI----HSGERYFEGLPLSAK-TSETYTALLHLYAG-------AKWT-------EKAEELF 67 (295)
Q Consensus 11 ~~~~~~li~~~~~~----~~~----~~A~~~~~~~~~~~p-~~~~~~~li~~~~~-------~~~~-------~~a~~~~ 67 (295)
...|...+....+. ++. ++|..+|+......| +...|..++..+.. .|++ ++|..+|
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 34566666665443 233 688899999888766 78899998888763 5775 8999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hH-hHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022531 68 ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IF-TYNLWISSCAATLNIDQVKKFLDEMSCDSG 145 (295)
Q Consensus 68 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 145 (295)
++..+.--+-+...|..++..+.+.|++++|.++|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+.
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-- 163 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 163 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 99998412345678999999999999999999999999984 454 33 7899999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHH-hcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCC--CH
Q 022531 146 GSDDWVKYVNLVNIYI-TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK-QKM--TS 221 (295)
Q Consensus 146 ~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~--~~ 221 (295)
.+++...|........ ..|++++|.. +++...+..+. +...|..++..+.+.|+.++|..+|++..... +.| ..
T Consensus 164 ~p~~~~~~~~~a~~~~~~~~~~~~A~~-~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 ARTRHHVYVTAALMEYYCSKDKSVAFK-IFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp TTCCTHHHHHHHHHHHHTSCCHHHHHH-HHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 2445566654444432 3699999999 88888876654 67788899999999999999999999998863 354 35
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 222 RNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
..|..++....+.|+.+.|..+++++.+..
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 578888888999999999999999988754
No 51
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=125.35 Aligned_cols=240 Identities=13% Similarity=0.028 Sum_probs=155.0
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQS-------NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK------N 109 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 109 (295)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4667777888888888888888888877762 22334566777888888888888888888777653 2
Q ss_pred CCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhc------CCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh--
Q 022531 110 VVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD------SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS-- 180 (295)
Q Consensus 110 ~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 180 (295)
-.| ...++..+...+...|++++|...++++... ...+....++..+...+...|++++|.+ .+.+....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~a~~~~~ 184 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY-YYQRALEIYQ 184 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHH
Confidence 122 3456777777888888888888888876653 1223345567778888888888888888 77776654
Q ss_pred ----c-CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc-------CCCCHH-------hHHHHHHHHHhcCChHHHH
Q 022531 181 ----I-TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK-------QKMTSR-------NYICILSSYLMLGHLKEVG 241 (295)
Q Consensus 181 ----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~-------~~~~li~~~~~~~~~~~A~ 241 (295)
. ......++..+...|...|++++|.+.++++.+.. ..+... .+..+...+...+.+.+|.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1 11134567777788888888888888888776431 111111 1222334444556666777
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 242 EIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
..+....... +.+..++..+..+|.+.|++++|.++|++.++
T Consensus 265 ~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777766532 34567888999999999999999999998876
No 52
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=1.1e-12 Score=111.26 Aligned_cols=256 Identities=7% Similarity=-0.081 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHHHh----ccChhHHHHHHhhcccCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHhCCCCCCHHH
Q 022531 10 SDSDYATRIDLMTK----VFGIHSGERYFEGLPLSAKTSETYTALLHLYAG----AKWTEKAEELFERVKQSNLSFNALM 81 (295)
Q Consensus 10 ~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ 81 (295)
++..+..+...|.. .+++++|...|+...+. .+...+..|...|.. .+++++|...|++..+.| ++..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 45555666666666 67777787777776653 356667777777777 777777888777777765 5666
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCHHHH
Q 022531 82 YNEMMTLYMS----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKY 153 (295)
Q Consensus 82 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (295)
+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.+.|++..+. + +...+
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a~ 186 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 6677777776 677777777777777654 44556666666665 56777777777776664 2 45566
Q ss_pred HHHHHHHHh----cCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCCHHhHH
Q 022531 154 VNLVNIYIT----ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYI 225 (295)
Q Consensus 154 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 225 (295)
..+...|.. .++.++|.+ ++.+..+.+ +...+..+...|.. .++.++|.++|++..+.+ +...+.
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~-~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQ-WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHH-HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHH-HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 666666666 677777777 666655543 33455555555554 566667777666665543 233444
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHhcC
Q 022531 226 CILSSYLM----LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV-----GLTEKANEFHMLLLQKN 287 (295)
Q Consensus 226 ~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g 287 (295)
.+...|.. .++.++|.++|++..+.+ +...+..+...|... +++++|..+|++..+.|
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 45555555 566666666666655432 233444555555554 56666666666655543
No 53
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=9.8e-13 Score=111.55 Aligned_cols=258 Identities=10% Similarity=0.027 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHh----ccChhHHHHHHhhcccCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHhCCCCCCHHHH
Q 022531 11 DSDYATRIDLMTK----VFGIHSGERYFEGLPLSAKTSETYTALLHLYAG----AKWTEKAEELFERVKQSNLSFNALMY 82 (295)
Q Consensus 11 ~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~ 82 (295)
+..+..|...|.. .+++++|...|+...+. .+...+..|...|.. .+++++|...|++..+.| +...+
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 150 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQ 150 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 4455555566665 66666666666665543 244555556666655 556666666666666655 45555
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCHHHHH
Q 022531 83 NEMMTLYMS----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYV 154 (295)
Q Consensus 83 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (295)
..|...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|...|++..+. + +..++.
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~ 223 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-G---DELGQL 223 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHH
Confidence 555555555 556666666666655542 34455555555554 55556666655555543 1 233444
Q ss_pred HHHHHHHh----cCchhhHHHHHHHHHHHhcCC---------------------------------CccccHHHHHHHHH
Q 022531 155 NLVNIYIT----ASHLVNAESSTLVEAEKSITQ---------------------------------RQWITYDFLIILYA 197 (295)
Q Consensus 155 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~---------------------------------~~~~~~~~li~~~~ 197 (295)
.+...|.. .+++++|.. ++....+.+.. .+...+..+...|.
T Consensus 224 ~lg~~y~~g~g~~~~~~~A~~-~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 224 HLADMYYFGIGVTQDYTQSRV-LFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYD 302 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444443 445555555 44444332210 12223333444443
Q ss_pred hc-----CCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcC---ChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHc
Q 022531 198 GL-----GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLG---HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 269 (295)
Q Consensus 198 ~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (295)
.. ++.++|+.+|++..+.+ +...+..+...|...| +.++|.++|++..+. .+...+..|...|..
T Consensus 303 ~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 303 KGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQ 375 (490)
T ss_dssp HCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred cCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHc
Confidence 33 44445555444444432 2233334444444433 445555555555442 133445555555555
Q ss_pred ----cCChHHHHHHHHHHHhcC
Q 022531 270 ----VGLTEKANEFHMLLLQKN 287 (295)
Q Consensus 270 ----~g~~~~a~~~~~~m~~~g 287 (295)
.+++++|..+|++..+.|
T Consensus 376 g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 376 GKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHhCC
Confidence 556666666666555543
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=2.5e-13 Score=108.11 Aligned_cols=237 Identities=8% Similarity=0.060 Sum_probs=184.8
Q ss_pred CHHHHHHHHHHHHcc----CcH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHH
Q 022531 43 TSETYTALLHLYAGA----KWT----EKAEELFERVKQSNLSFNALMYNEMMTLYMS-------VGQV-------EKVAL 100 (295)
Q Consensus 43 ~~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~~~~-------~~a~~ 100 (295)
+...|...+....+. ++. ++|..+|++..... +.++..|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 344666666665443 233 78999999998864 5578899988888763 5875 99999
Q ss_pred HHHHHHhCCCCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHhcCchhhHHHHHHHHHH
Q 022531 101 VVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV-KYVNLVNIYITASHLVNAESSTLVEAE 178 (295)
Q Consensus 101 ~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (295)
+|++..+. +.| +...|..++..+.+.|++++|..+|+++.+. .+.+.. +|..+...+.+.|++++|.. ++.+..
T Consensus 86 ~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~a~ 161 (308)
T 2ond_A 86 IYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM-IFKKAR 161 (308)
T ss_dssp HHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHH-HHHHHH
T ss_pred HHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHH-HHHHHH
Confidence 99999983 234 4568999999999999999999999999974 122343 89999999999999999999 898887
Q ss_pred HhcCCCccccHHHHHHHH-HhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCC--
Q 022531 179 KSITQRQWITYDFLIILY-AGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF-- 255 (295)
Q Consensus 179 ~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 255 (295)
...+ .+...|....... ...|+.++|..+|++..+.. +-+...+..++..+.+.|++++|..+|++.......+|
T Consensus 162 ~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 162 EDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp TSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred hcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 7554 2444454433332 23799999999999987763 33567788899999999999999999999988532234
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 256 DISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
....|..++..+.+.|+.+.|..+++++.+.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999873
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.67 E-value=6.8e-15 Score=124.12 Aligned_cols=207 Identities=11% Similarity=-0.067 Sum_probs=96.5
Q ss_pred HHHHHHhhcccCCC-CHHHHHHHHHHHHccCcH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022531 29 SGERYFEGLPLSAK-TSETYTALLHLYAGAKWT-EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106 (295)
Q Consensus 29 ~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 106 (295)
++...++......| +...|..+...+...|++ ++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.|++..
T Consensus 86 ~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334443333333 444555555555555555 55555555554432 2234455555555555555555555555554
Q ss_pred hCCCCCChHhHHHHHHHHHcc---------CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--------CchhhH
Q 022531 107 RKNVVPDIFTYNLWISSCAAT---------LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA--------SHLVNA 169 (295)
Q Consensus 107 ~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a 169 (295)
+. .|+...+..+...+... |++++|...|++..+. .+.+...|..+..+|... |++++|
T Consensus 165 ~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 165 TH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp TT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 43 23344444455555554 5555555555554442 133344445555555544 555555
Q ss_pred HHHHHHHHHHhcCC--CccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHH
Q 022531 170 ESSTLVEAEKSITQ--RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGE 242 (295)
Q Consensus 170 ~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 242 (295)
.. .+++.....+. .+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++...|++++|.+
T Consensus 241 ~~-~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 241 LS-AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HH-HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 44444443221 233444445555555555555555555444432 1122334444444444444444444
No 56
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.2e-13 Score=116.39 Aligned_cols=200 Identities=11% Similarity=-0.083 Sum_probs=136.3
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccC---------CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhC-----C
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLS---------AK-TSETYTALLHLYAGAKWTEKAEELFERVKQS-----N 74 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---------~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 74 (295)
....|+.|...+...|++++|++.|++..+. .| ...+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999875431 34 5678999999999999999999999887642 1
Q ss_pred --CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHH---HHccCCHHHHHHHHHHHhhcCCC
Q 022531 75 --LSFNALMYNEMMTLYMSV--GQVEKVALVVEEIKRKNVVPD-IFTYNLWISS---CAATLNIDQVKKFLDEMSCDSGG 146 (295)
Q Consensus 75 --~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~~ 146 (295)
-.....++..+..++... +++++|+..|++..+. .|+ ...+..+..+ +...++.++|++.+++.... .
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--N 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--C
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--C
Confidence 112356777776666654 4689999999998875 343 4444444433 34456677788877777664 2
Q ss_pred CCCHHHHHHHHHHHHh----cCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 147 SDDWVKYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 147 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
+.+..++..+...+.. .+++++|.+ .+++.....+. +..++..+...|...|++++|.+.+++..+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~-~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEK-LVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHH-HHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 3455555555544443 356677777 66666554433 5566777777788888888888877776654
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2e-15 Score=119.90 Aligned_cols=239 Identities=10% Similarity=0.014 Sum_probs=172.6
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhccc--------CCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhC------C
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPL--------SAK-TSETYTALLHLYAGAKWTEKAEELFERVKQS------N 74 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 74 (295)
+...+..+...+...|++++|..+|+.+.. ..| ...++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 466788899999999999999999998876 234 5678999999999999999999999988754 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhc---
Q 022531 75 -LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK------NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD--- 143 (295)
Q Consensus 75 -~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 143 (295)
.+....++..+...|...|++++|...|++..+. +..| ...++..+...+...|++++|..+++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2334668899999999999999999999998764 2223 3556888899999999999999999998763
Q ss_pred ---CCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcC-------CC-ccccHHH------HHHHHHhcCCHHHHH
Q 022531 144 ---SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT-------QR-QWITYDF------LIILYAGLGNKDKID 206 (295)
Q Consensus 144 ---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~-~~~~~~~------li~~~~~~g~~~~a~ 206 (295)
...+....++..+..+|...|++++|.+ .+.+...... .+ ....+.. +...+...+.+.++.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAET-LYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1123345678899999999999999999 8888775321 11 1222222 222233455566666
Q ss_pred HHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 207 QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 207 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
..++...... .....++..+..+|.+.|++++|.++|++..+.
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666655432 233456778999999999999999999988763
No 58
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=9e-13 Score=112.87 Aligned_cols=149 Identities=7% Similarity=-0.030 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCc-cccHHHHHHHHHhcCCHHHHHHHHH
Q 022531 132 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ-WITYDFLIILYAGLGNKDKIDQIWK 210 (295)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 210 (295)
+|..+|++.... -.+.+...|..++..+.+.|++++|.. +++++....+. + ...|..++..+.+.|+.++|.++|+
T Consensus 304 ~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 304 EAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHS-IYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHH-HHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555555531 123345555566666666666666666 55555543221 2 1355555555556666666666666
Q ss_pred HHHhccCCCCHHhHHHHHHH-HHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 022531 211 SLRMTKQKMTSRNYICILSS-YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 286 (295)
Q Consensus 211 ~m~~~~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 286 (295)
+..+.. +.+...|...... +...|+.++|.++|+...+.. +.+...|..++..+.+.|+.++|..+|++.+..
T Consensus 381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 655431 1112222221111 235777788888888777654 245677888888888888888888888888765
No 59
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=6.1e-14 Score=118.21 Aligned_cols=279 Identities=10% Similarity=-0.075 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHhc--cChhHHHHHHhhcccCCC-CHHHHHHHHHH---HHccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 022531 11 DSDYATRIDLMTKV--FGIHSGERYFEGLPLSAK-TSETYTALLHL---YAGAKWTEKAEELFERVKQSNLSFNALMYNE 84 (295)
Q Consensus 11 ~~~~~~li~~~~~~--~~~~~A~~~~~~~~~~~p-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 84 (295)
+.++.....++.+. +++++|...|+...+..| +...+..+..+ +...++.++|++.+++..+.+ +.+..++..
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~ 214 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHH
Confidence 45666666666554 469999999999888777 56666666655 344577788999999888765 456777777
Q ss_pred HHHHHHhc----CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 022531 85 MMTLYMSV----GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160 (295)
Q Consensus 85 li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (295)
+...+... |++++|.+++++...... .+..++..+...+.+.|++++|...+++..+. .|.+..++..+..+|
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 76666554 578899999999887533 35677888999999999999999999999875 355667777777666
Q ss_pred Hhc-------------------CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH
Q 022531 161 ITA-------------------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 221 (295)
Q Consensus 161 ~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 221 (295)
... +..+.|.. .+.......+ .+..++..+...|...|++++|++.|++..+....|..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVA-HLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHH-HHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHH-HHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 432 23456666 6666655443 36778999999999999999999999998876433322
Q ss_pred H--hHHHHHH-HHHhcCChHHHHHHHHHHhhhc----------------------CCCCCHHHHHHHHHHHHccCChHHH
Q 022531 222 R--NYICILS-SYLMLGHLKEVGEIIDQWKQSA----------------------TSDFDISACNRLLGAFSDVGLTEKA 276 (295)
Q Consensus 222 ~--~~~~li~-~~~~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~g~~~~a 276 (295)
. .+..+.. .....|+.++|+..|.+..+-. ..+.+..+|..+..+|...|++++|
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 1 1222222 2346789999999888765421 1134567899999999999999999
Q ss_pred HHHHHHHHhcC-CCCCCCCC
Q 022531 277 NEFHMLLLQKN-CAPTNASG 295 (295)
Q Consensus 277 ~~~~~~m~~~g-~~p~~~t~ 295 (295)
.+.|++.++.| ..|+..+|
T Consensus 450 ~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 450 DEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp --------------------
T ss_pred HHHHHHHHhcCCCCCcHhhc
Confidence 99999998854 44665554
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.64 E-value=2.3e-14 Score=120.87 Aligned_cols=215 Identities=10% Similarity=-0.074 Sum_probs=183.4
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHH
Q 022531 59 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV-EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFL 137 (295)
Q Consensus 59 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 137 (295)
.+++++..+++..... +.+...+..+...+...|++ ++|++.|++..+... -+..+|..+..+|.+.|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4677788888776653 45788999999999999999 999999999988632 25788999999999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhc---------CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhc--------C
Q 022531 138 DEMSCDSGGSDDWVKYVNLVNIYITA---------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL--------G 200 (295)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g 200 (295)
++.... .|+..++..+..++... |++++|.. .+++.....+. +...|..+..+|... |
T Consensus 161 ~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR-QAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence 999975 36678899999999999 99999999 89988876644 678899999999988 9
Q ss_pred CHHHHHHHHHHHHhccCC--CCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 022531 201 NKDKIDQIWKSLRMTKQK--MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE 278 (295)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 278 (295)
++++|++.|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876310 377888899999999999999999999998865 3567788999999999999999987
Q ss_pred HHHH
Q 022531 279 FHML 282 (295)
Q Consensus 279 ~~~~ 282 (295)
.+.+
T Consensus 314 ~~~~ 317 (474)
T 4abn_A 314 SKGK 317 (474)
T ss_dssp HTTT
T ss_pred Hhcc
Confidence 5544
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=8.7e-14 Score=102.05 Aligned_cols=162 Identities=12% Similarity=0.055 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 124 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 124 (295)
.+|..+...+.+.|++++|+..|++..+.+ |-+..+|..+..+|.+.|++++|...+++...... .+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHH
Confidence 344444444444444444444444444332 22333444444444444444444444444333211 1223333333334
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHH
Q 022531 125 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 204 (295)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 204 (295)
...++++.+...+.+.... .+.+..++..+..+|.+.|++++|.+ .+++..+..+. +..+|..+..+|.+.|++++
T Consensus 84 ~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIE-AYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHH-HHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 4444444444444443332 12233333344444444444444444 33333332221 23333333334444444444
Q ss_pred HHHHHHHH
Q 022531 205 IDQIWKSL 212 (295)
Q Consensus 205 a~~~~~~m 212 (295)
|++.|++.
T Consensus 160 A~~~~~~a 167 (184)
T 3vtx_A 160 AVKYFKKA 167 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=7e-14 Score=102.56 Aligned_cols=167 Identities=11% Similarity=-0.025 Sum_probs=149.0
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
++..|..+...+.+.|++++|++.|++..+..| +..+|..+..++.+.|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 577899999999999999999999999988877 78899999999999999999999999998765 4567888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhh
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 168 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (295)
+...++++.|...+.+..+... .+...+..+...+.+.|++++|++.|++..+. .+.+..++..+..+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999887533 35778889999999999999999999999885 35678889999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 022531 169 AESSTLVEAEKSI 181 (295)
Q Consensus 169 a~~~~~~~~~~~~ 181 (295)
|.+ .+++..+..
T Consensus 160 A~~-~~~~al~~~ 171 (184)
T 3vtx_A 160 AVK-YFKKALEKE 171 (184)
T ss_dssp HHH-HHHHHHHTT
T ss_pred HHH-HHHHHHhCC
Confidence 999 888877644
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=1.1e-13 Score=113.53 Aligned_cols=250 Identities=9% Similarity=-0.055 Sum_probs=183.8
Q ss_pred HHHhhcccCCCCHH------HHHHHHHHHHccCcHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 022531 32 RYFEGLPLSAKTSE------TYTALLHLYAGAKWTEKAEELFERVKQS----NLSF-NALMYNEMMTLYMSVGQVEKVAL 100 (295)
Q Consensus 32 ~~~~~~~~~~p~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~ 100 (295)
+.++.+....++.. .+......+...|++++|...|++..+. +-++ ...++..+...|...|++++|+.
T Consensus 85 ~~~~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~ 164 (383)
T 3ulq_A 85 DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMD 164 (383)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666544322222 2333677888999999999999998764 2112 34688999999999999999999
Q ss_pred HHHHHHhCC--C---CC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcC---C-CCCCHHHHHHHHHHHHhcCchhhHH
Q 022531 101 VVEEIKRKN--V---VP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDS---G-GSDDWVKYVNLVNIYITASHLVNAE 170 (295)
Q Consensus 101 ~~~~m~~~~--~---~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (295)
.+++..+.- . .| ...++..+...|...|++++|...|++..... + .+....++..+..+|...|++++|.
T Consensus 165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 999876521 1 11 24578888899999999999999999876531 1 1112247888999999999999999
Q ss_pred HHHHHHHHHh----cC-CCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccC---CC-CHHhHHHHHHHHHhcCC---hH
Q 022531 171 SSTLVEAEKS----IT-QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ---KM-TSRNYICILSSYLMLGH---LK 238 (295)
Q Consensus 171 ~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~-~~~~~~~li~~~~~~~~---~~ 238 (295)
+ .+.+.... +. +....++..+...|...|++++|.+.+++..+... .| ....+..+...+...|+ ++
T Consensus 245 ~-~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 323 (383)
T 3ulq_A 245 P-YFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQ 323 (383)
T ss_dssp H-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred H-HHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9 88887762 22 23456788899999999999999999998754321 11 12235667778888898 77
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 239 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+|+.++++... .+.....+..+...|...|++++|..++++..+
T Consensus 324 ~al~~~~~~~~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 324 GFFDFLESKML---YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777776522 123345778899999999999999999999875
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.59 E-value=6e-13 Score=97.21 Aligned_cols=166 Identities=10% Similarity=-0.036 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
...|..+...+...|++++|...|+.+....| +...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566677777888888888888888777655 67777788888888888888888888877653 44667777777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhH
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (295)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++... .+.+..++..+..++...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888777653 235666777777777788888888888777764 244566777777777777888877
Q ss_pred HHHHHHHHHHhc
Q 022531 170 ESSTLVEAEKSI 181 (295)
Q Consensus 170 ~~~~~~~~~~~~ 181 (295)
.. .+.......
T Consensus 164 ~~-~~~~~~~~~ 174 (186)
T 3as5_A 164 LP-HFKKANELD 174 (186)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHcC
Confidence 77 666665544
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=9e-14 Score=115.01 Aligned_cols=240 Identities=14% Similarity=0.058 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCh
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA----LMYNEMMTLYMSVGQVEKVALVVEEIKRK----NV-VPDI 114 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~ 114 (295)
...+..+...+...|++++|...|+++.+.+ +.+. .+|..+...|...|++++|...|++..+. +. ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4456667888999999999999999998864 2233 47889999999999999999999987653 11 2235
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcC----CCCCCHHHHHHHHHHHHhcCc-----------------hhhHHHHH
Q 022531 115 FTYNLWISSCAATLNIDQVKKFLDEMSCDS----GGSDDWVKYVNLVNIYITASH-----------------LVNAESST 173 (295)
Q Consensus 115 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 173 (295)
.++..+...|...|++++|...++++.... ..+....++..+...|...|+ +++|.+ .
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~-~ 205 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE-F 205 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH-H
Confidence 678888899999999999999998876531 122335578889999999999 999999 7
Q ss_pred HHHHHHhcC-----CCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----HHhHHHHHHHHHhcCChHHHHHH
Q 022531 174 LVEAEKSIT-----QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-MT----SRNYICILSSYLMLGHLKEVGEI 243 (295)
Q Consensus 174 ~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~ 243 (295)
+.+...... .....++..+...|...|++++|++.+++..+.... ++ ...+..+...|...|++++|.+.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 776654221 112357778888999999999999999987654211 12 12677889999999999999999
Q ss_pred HHHHhhhcCCC----CCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 244 IDQWKQSATSD----FDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 244 ~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+++........ ....++..+..+|...|++++|..++++.++
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99886643111 1256788899999999999999999998865
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=2.3e-13 Score=112.17 Aligned_cols=242 Identities=15% Similarity=0.052 Sum_probs=185.8
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 022531 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NVVP- 112 (295)
Q Consensus 42 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p- 112 (295)
+....+......+...|++++|...|++..+.+ +.+ ..++..+...|...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 356677888999999999999999999998864 233 357889999999999999999999986542 2222
Q ss_pred ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHhcCc--------------------hhh
Q 022531 113 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSG----GSDDWVKYVNLVNIYITASH--------------------LVN 168 (295)
Q Consensus 113 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~--------------------~~~ 168 (295)
...++..+...+...|++++|...+++...... ......++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245688888899999999999999988765311 11124478889999999999 999
Q ss_pred HHHHHHHHHHHhcCC-----CccccHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CCC----HHhHHHHHHHHHhcCChH
Q 022531 169 AESSTLVEAEKSITQ-----RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-KMT----SRNYICILSSYLMLGHLK 238 (295)
Q Consensus 169 a~~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~~~ 238 (295)
|.. .+......... ....++..+...|...|++++|...+++..+... .++ ...+..+...|...|+++
T Consensus 166 A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 166 AVD-FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999 77766543211 1235677888899999999999999998764321 122 236778899999999999
Q ss_pred HHHHHHHHHhhhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 239 EVGEIIDQWKQSATSDFD----ISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+|...+++........++ ..++..+...|...|++++|..++++..+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999988653211112 56788899999999999999999998865
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=2.2e-13 Score=109.12 Aligned_cols=240 Identities=16% Similarity=0.059 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-Ch
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NVVP-DI 114 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~ 114 (295)
...+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|++++|.+.+++..+. +..| ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3456667788899999999999999998864 223 467889999999999999999999886542 2122 25
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhcCc--------------------hhhHH
Q 022531 115 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD----WVKYVNLVNIYITASH--------------------LVNAE 170 (295)
Q Consensus 115 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 170 (295)
.++..+...+...|++++|...+++........++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 57888888999999999999999987653111122 3478888999999999 99999
Q ss_pred HHHHHHHHHhcC----C-CccccHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CCC----HHhHHHHHHHHHhcCChHHH
Q 022531 171 SSTLVEAEKSIT----Q-RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-KMT----SRNYICILSSYLMLGHLKEV 240 (295)
Q Consensus 171 ~~~~~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~~~~A 240 (295)
+ .+.+...... . ....++..+...+...|++++|.+.+++..+... .++ ...+..+...+...|++++|
T Consensus 164 ~-~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 164 D-LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp H-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8 7766544211 1 1234677888889999999999999998754321 111 23577788999999999999
Q ss_pred HHHHHHHhhhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 241 GEIIDQWKQSATSDFD----ISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 241 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.+.+++..+.....++ ..++..+...+...|++++|..++++..+
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999988653211112 56788899999999999999999998865
No 68
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=4.8e-12 Score=103.35 Aligned_cols=272 Identities=12% Similarity=0.050 Sum_probs=194.8
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCC--CH----HHHHHHHHHHHccCcHHHHHHHHHHHHhC----CCCC-CHHH
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAK--TS----ETYTALLHLYAGAKWTEKAEELFERVKQS----NLSF-NALM 81 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p--~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~ 81 (295)
........+...|++++|...++......| +. ..++.+...+...|++++|...+++.... +... ...+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344455667789999999999988765533 22 25677788899999999999999987642 2100 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--CC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCC---CCCCHH
Q 022531 82 YNEMMTLYMSVGQVEKVALVVEEIKRK----NVV--PD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSG---GSDDWV 151 (295)
Q Consensus 82 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~ 151 (295)
+..+...+...|++++|...+++..+. +.. |. ..++..+...+...|++++|...+++...... .+....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 677888899999999999999987653 221 22 34566678889999999999999998765311 111235
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCcc-ccHH-----HHHHHHHhcCCHHHHHHHHHHHHhccCCCC---HH
Q 022531 152 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW-ITYD-----FLIILYAGLGNKDKIDQIWKSLRMTKQKMT---SR 222 (295)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~ 222 (295)
++..+...+...|++++|.. .+.+.......++. ..+. ..+..+...|+.++|...+++.......++ ..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARS-QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHH-HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 67788899999999999999 88887665433322 1222 223447789999999999998765432211 22
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhhcC---CCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 223 NYICILSSYLMLGHLKEVGEIIDQWKQSAT---SDFDI-SACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.+..+...+...|++++|...+++...... ..++. .++..+..++...|+.++|...+++..+
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456778889999999999999998765321 11122 3666778889999999999999988764
No 69
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1.6e-11 Score=105.18 Aligned_cols=217 Identities=10% Similarity=0.073 Sum_probs=164.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCChHhHHHHHHHHHcc
Q 022531 62 KAEELFERVKQSNLSFNALMYNEMMTLYMS-------VGQVE-------KVALVVEEIKRKNVVPDIFTYNLWISSCAAT 127 (295)
Q Consensus 62 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 127 (295)
++..+|++..... +-+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3444555555432 3356677777777765 68876 8999999998631233577899999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCCC-H-HHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHH-HHhcCCHHH
Q 022531 128 LNIDQVKKFLDEMSCDSGGSDD-W-VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL-YAGLGNKDK 204 (295)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~ 204 (295)
|++++|..+|+++... .|+ . .+|..++..+.+.|++++|.. ++.+..+..+. +...|...... +...|+.++
T Consensus 335 g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRM-IFKKAREDART-RHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHH-HHHHHHhccCC-chHHHHHHHHHHHHHcCChhH
Confidence 9999999999999974 343 3 588999999999999999999 88888765332 22233222222 336899999
Q ss_pred HHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHH
Q 022531 205 IDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFHML 282 (295)
Q Consensus 205 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (295)
|..+|+...+.. +-+...+..++..+.+.|+.++|..+|++........|+ ...|...+......|+.+.+..++++
T Consensus 410 A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 410 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887763 335678888999999999999999999999886433332 44788888888899999999999998
Q ss_pred HHh
Q 022531 283 LLQ 285 (295)
Q Consensus 283 m~~ 285 (295)
+.+
T Consensus 489 ~~~ 491 (530)
T 2ooe_A 489 RFT 491 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.54 E-value=2.8e-12 Score=93.60 Aligned_cols=164 Identities=14% Similarity=0.086 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 022531 80 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 159 (295)
Q Consensus 80 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (295)
..+..+...+...|++++|...|+++.+... .+..++..+...+...|++++|...++++... .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 3455555566666666666666665554322 24455555555666666666666666665543 23344555555555
Q ss_pred HHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHH
Q 022531 160 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 239 (295)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 239 (295)
+...|++++|.+ .+.......+ .+...+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~-~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVP-LLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHH-HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHH-HHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 555566666655 5555444332 233444444455555555555555555544432 2233444444455555555555
Q ss_pred HHHHHHHHhh
Q 022531 240 VGEIIDQWKQ 249 (295)
Q Consensus 240 A~~~~~~~~~ 249 (295)
|.+.+++..+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=8.1e-13 Score=116.15 Aligned_cols=165 Identities=10% Similarity=-0.038 Sum_probs=145.4
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
+...|+.|...+.+.|++++|++.|++..+..| +..+|+.+..++.+.|++++|++.|++..+.+ +-+..+|+.+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 367899999999999999999999999988877 68899999999999999999999999998875 4468899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhh
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 168 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (295)
|.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|++.|++..+. .+.+..++..+..++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999885322 5778999999999999999999999998875 35567889999999999999999
Q ss_pred HHHHHHHHHHH
Q 022531 169 AESSTLVEAEK 179 (295)
Q Consensus 169 a~~~~~~~~~~ 179 (295)
|.+ .+++..+
T Consensus 164 A~~-~~~kal~ 173 (723)
T 4gyw_A 164 YDE-RMKKLVS 173 (723)
T ss_dssp HHH-HHHHHHH
T ss_pred HHH-HHHHHHH
Confidence 998 7776654
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=8.9e-13 Score=108.17 Aligned_cols=229 Identities=10% Similarity=-0.039 Sum_probs=174.4
Q ss_pred HHHHHHhccChhHHHHHHhhcccC---CC----CHHHHHHHHHHHHccCcHHHHHHHHHHHHhC----C--CCCCHHHHH
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLS---AK----TSETYTALLHLYAGAKWTEKAEELFERVKQS----N--LSFNALMYN 83 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~---~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~--~~p~~~~~~ 83 (295)
....+...|++++|...|+..... .+ ...+|..+...+...|++++|...+++..+. + .+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677889999999999988664 12 3568999999999999999999999987643 1 011245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhc---CCC-CCCHHHHH
Q 022531 84 EMMTLYMSVGQVEKVALVVEEIKRK----NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGG-SDDWVKYV 154 (295)
Q Consensus 84 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~ 154 (295)
.+...|...|++++|+..|++..+. +..+ ...++..+...|...|++++|...+++.... .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 9999999999999999999987753 1111 1247888999999999999999999987761 122 34567788
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhcCC---C-ccccHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCCC-HHhHHH
Q 022531 155 NLVNIYITASHLVNAESSTLVEAEKSITQ---R-QWITYDFLIILYAGLGN---KDKIDQIWKSLRMTKQKMT-SRNYIC 226 (295)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~-~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~-~~~~~~ 226 (295)
.+..+|.+.|++++|.. .+++....... | ....+..+...|...|+ .++|+.++++. +..|+ ...+..
T Consensus 269 ~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHE-YHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 99999999999999999 88877653321 1 22335667778888898 77777777765 22222 345667
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 022531 227 ILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
+...|...|++++|.+.+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999998865
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=1.5e-12 Score=101.62 Aligned_cols=204 Identities=13% Similarity=0.011 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhc------CC
Q 022531 79 ALMYNEMMTLYMSVGQVEKVALVVEEIKRK------NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD------SG 145 (295)
Q Consensus 79 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~ 145 (295)
..++..+...|...|++++|+..|++..+. +-.| ...++..+...+...|++++|...++++... ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 334444455555555555555555444332 1111 2334444555555555555555555544332 01
Q ss_pred CCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh------c-CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 022531 146 GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS------I-TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT--- 215 (295)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 215 (295)
.+....++..+..+|...|++++|.. .+.+.... . ......++..+...|...|++++|..++++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEY-YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12233445555555555555555555 55444432 0 1112344555555566666666666666555432
Q ss_pred ----cCCCCH-HhHHHHHHHHHhcCC------hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 216 ----KQKMTS-RNYICILSSYLMLGH------LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 216 ----~~~~~~-~~~~~li~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
...+.. ..+..+...+...+. +..+...+...... .+....++..+..+|...|++++|..++++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD--SPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111221 122222222222222 22222222222111 11234577888899999999999999998887
Q ss_pred h
Q 022531 285 Q 285 (295)
Q Consensus 285 ~ 285 (295)
+
T Consensus 280 ~ 280 (283)
T 3edt_B 280 R 280 (283)
T ss_dssp T
T ss_pred H
Confidence 5
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=1.5e-12 Score=114.48 Aligned_cols=168 Identities=12% Similarity=0.007 Sum_probs=146.8
Q ss_pred CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHH
Q 022531 41 AK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 119 (295)
Q Consensus 41 ~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 119 (295)
.| +...|+.|...+.+.|++++|++.|++..+.. +-+..+|+.|..+|.+.|++++|++.|++..+.... +..+|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 35 57899999999999999999999999998875 446889999999999999999999999999885322 4778999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhc
Q 022531 120 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL 199 (295)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 199 (295)
+..++.+.|++++|++.|++..+. .+.+..+|+.+..+|.+.|++++|.+ .+++..+..+. +...|..+...+...
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~-~~~~Al~l~P~-~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIA-SYRTALKLKPD-FPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-ChHHHhhhhhHHHhc
Confidence 999999999999999999999875 35577899999999999999999999 89988876644 677899999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 022531 200 GNKDKIDQIWKSLRM 214 (295)
Q Consensus 200 g~~~~a~~~~~~m~~ 214 (295)
|++++|.+.+++..+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999887754
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.50 E-value=5.6e-13 Score=104.13 Aligned_cols=226 Identities=11% Similarity=0.056 Sum_probs=157.9
Q ss_pred HhccChhHHHHHHhhcccC--------CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhC------C-CCCCHHHHHHH
Q 022531 22 TKVFGIHSGERYFEGLPLS--------AK-TSETYTALLHLYAGAKWTEKAEELFERVKQS------N-LSFNALMYNEM 85 (295)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~--------~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~-~~p~~~~~~~l 85 (295)
...|++++|...|++..+. .| ...++..+...+...|++++|...|++..+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777777776665442 23 5778999999999999999999999988754 2 22345688999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhc------CCCCCCHHH
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRK------NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD------SGGSDDWVK 152 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 152 (295)
...|...|++++|.+.|++..+. ...| ...++..+...+...|++++|...++++... ...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 1123 3567888999999999999999999987763 112334567
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhc-------CCCc-cccHHHHHHHHHhcCCHHHHH------HHHHHHHhccCC
Q 022531 153 YVNLVNIYITASHLVNAESSTLVEAEKSI-------TQRQ-WITYDFLIILYAGLGNKDKID------QIWKSLRMTKQK 218 (295)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-~~~~~~li~~~~~~g~~~~a~------~~~~~m~~~~~~ 218 (295)
+..+..+|.+.|++++|.. .+.+..... ..+. ...|..+...+...+....+. ..++..... ..
T Consensus 172 ~~~la~~~~~~g~~~~A~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAET-LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CH
T ss_pred HHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CH
Confidence 8899999999999999999 888777542 1222 333444444443333322222 222211110 01
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 219 MTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
.....+..+...|...|++++|.++|++..+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1234577789999999999999999998765
No 76
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.49 E-value=5.7e-11 Score=108.24 Aligned_cols=204 Identities=10% Similarity=0.056 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
+..+|..+..++...|++++|.+.|.+. -|...|..++.++.+.|++++|.+.|...++.. ++....+.++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 3555666666666666666666666442 245566666666666666666666666555432 22222333566
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCH
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 202 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 202 (295)
+|++.+++++...+ .. .++...|..+...|...|++++|.. +|... ..|..+...+.+.|++
T Consensus 1176 aYAKl~rleele~f----I~----~~n~ad~~~iGd~le~eg~YeeA~~-~Y~kA---------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEF----IN----GPNNAHIQQVGDRCYDEKMYDAAKL-LYNNV---------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHHhhcCHHHHHHH----Hh----CCCHHHHHHHHHHHHhcCCHHHHHH-HHHhh---------hHHHHHHHHHHHhCCH
Confidence 66666665543322 11 1334445556666666666666666 55542 2566666666666666
Q ss_pred HHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 022531 203 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 282 (295)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (295)
++|.+.+++. .+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++.
T Consensus 1238 q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1238 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666543 12234444444444444444444433321 12333455666666777777777777655
Q ss_pred HH
Q 022531 283 LL 284 (295)
Q Consensus 283 m~ 284 (295)
.+
T Consensus 1306 aL 1307 (1630)
T 1xi4_A 1306 AL 1307 (1630)
T ss_pred Hh
Confidence 54
No 77
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.49 E-value=3e-11 Score=110.01 Aligned_cols=237 Identities=8% Similarity=0.047 Sum_probs=158.9
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
++.+|..+..++.+.|++++|.+.|... .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 1177 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHH
Confidence 4778999999999999999999999664 577888899999999999999999999877664 4444455689999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhH
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (295)
++.+++++..... + .|+...|..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|
T Consensus 1178 AKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1178 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHH
Confidence 9998888544332 2 346667777888899999999999998874 3678888889999999888
Q ss_pred HHHHHHHHHHhcCCCccccHH------------------------------HHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 022531 170 ESSTLVEAEKSITQRQWITYD------------------------------FLIILYAGLGNKDKIDQIWKSLRMTKQKM 219 (295)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~------------------------------~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 219 (295)
.+ .+.+. .+..+|. .++..|.+.|.+++|+.+++...... +-
T Consensus 1241 IE-aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-ra 1312 (1630)
T 1xi4_A 1241 VD-GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RA 1312 (1630)
T ss_pred HH-HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hh
Confidence 88 55543 1234444 44555555666666666665443322 11
Q ss_pred CHHhHHHHHHHHHhc--CChHHHHHHHHHHhhhcCCCC------CHHHHHHHHHHHHccCChHHHHHHH
Q 022531 220 TSRNYICILSSYLML--GHLKEVGEIIDQWKQSATSDF------DISACNRLLGAFSDVGLTEKANEFH 280 (295)
Q Consensus 220 ~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 280 (295)
....|+-+..+|++. ++..++.++|.. ....+| +...|..++..|.+.|+++.|....
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~---rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHH---hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 222344444444432 233333333332 111111 3455777777777777777766543
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=1.9e-11 Score=92.74 Aligned_cols=198 Identities=11% Similarity=-0.018 Sum_probs=136.3
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 022531 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 121 (295)
Q Consensus 42 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 121 (295)
.|+..|......+...|++++|...|++..+..-+++...+..+..++...|++++|++.|++..+.... +..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3667888888888888999999999988887653367777777888888889999999888888875322 466788888
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCCH-------HHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC-ccccHHHHH
Q 022531 122 SSCAATLNIDQVKKFLDEMSCDSGGSDDW-------VKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLI 193 (295)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li 193 (295)
..+...|++++|...+++..... +.+. .+|..+...+...|++++|.+ .+....+..+.. +...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE-NYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH-HHHHHHhcCCCcccHHHHHHHH
Confidence 88888888888888888887742 3344 457777777888888888888 777765543210 245566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 194 ILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
..|...| ...++++...+ ..+...|.... ....+.+++|...|++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 6664433 33444444433 22333443332 233456788888888877754
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=8.9e-12 Score=102.04 Aligned_cols=234 Identities=10% Similarity=-0.040 Sum_probs=174.1
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CC-ChH
Q 022531 47 YTALLHLYAGAKWTEKAEELFERVKQSNL-SF----NALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NV-VP-DIF 115 (295)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p-~~~ 115 (295)
|......+...|++++|...|++..+.-- .+ ...++..+...|...|++++|...+++..+. +. .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 33455667789999999999999876421 12 2457889999999999999999999987652 11 11 245
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcC---CCC-CCHHHHHHHHHHHHhcCchhhHHHHHHHHHHH-----hcCCCcc
Q 022531 116 TYNLWISSCAATLNIDQVKKFLDEMSCDS---GGS-DDWVKYVNLVNIYITASHLVNAESSTLVEAEK-----SITQRQW 186 (295)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 186 (295)
+++.+...|...|++++|...|++..... +.+ ....++..+..+|...|++++|.+ .+.+... ..+. ..
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~-~~~~al~~~~~~~~~~-~~ 261 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE-HFQKAAKVSREKVPDL-LP 261 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHCGGG-HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHhhCChh-HH
Confidence 68888999999999999999998876521 111 123567889999999999999999 8888776 3332 36
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCC---CC-HHhHHHHHHHHHhcCC---hHHHHHHHHHHhhhcCCCCCHHH
Q 022531 187 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK---MT-SRNYICILSSYLMLGH---LKEVGEIIDQWKQSATSDFDISA 259 (295)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~-~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~ 259 (295)
.++..+...|.+.|++++|...+++..+.... |. ...+..+...+...++ +.+|+..++... ..+.....
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHH
Confidence 67888899999999999999999988764322 21 2335556666777788 777777777632 21223456
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 260 CNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 260 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+..+...|...|++++|..+|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77899999999999999999998865
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48 E-value=5.4e-12 Score=99.61 Aligned_cols=161 Identities=7% Similarity=-0.083 Sum_probs=68.6
Q ss_pred HHHHccCcHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--hHhHHHHH
Q 022531 52 HLYAGAKWTEKAEELFERVKQS----NLSFN-ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV---VPD--IFTYNLWI 121 (295)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~li 121 (295)
..|...|++++|...|++..+. |-+++ ..+|+.+..+|.+.|++++|+..|++..+... .+. ..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555544321 11111 23455555555555555555555554443110 000 22344444
Q ss_pred HHHHcc-CCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccc------cHH
Q 022531 122 SSCAAT-LNIDQVKKFLDEMSCDSGGSDD----WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI------TYD 190 (295)
Q Consensus 122 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~ 190 (295)
..|... |++++|+..|++.........+ ..++..+...+.+.|++++|.. .+++.....+..... .|.
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD-IYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHhcCCcccHHHHHHHH
Confidence 445443 5555555555554432000000 1234444455555555555555 444444433222111 233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 022531 191 FLIILYAGLGNKDKIDQIWKSLR 213 (295)
Q Consensus 191 ~li~~~~~~g~~~~a~~~~~~m~ 213 (295)
.+..++...|++++|+..|++..
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555555443
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=2.1e-11 Score=92.41 Aligned_cols=201 Identities=9% Similarity=-0.083 Sum_probs=154.4
Q ss_pred CCCHHHHHHHHHHHHhccChhHHHHHHhhcccCC--CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 022531 8 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA--KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM 85 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 85 (295)
+.|+..+......+.+.|++++|...|+...... ++...+..+..++...|++++|+..|++..+.+ +.+..+|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 3567889999999999999999999999988765 577888889999999999999999999999875 3467789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC--CHHHHHHH
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRKNVVPDI-------FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD--DWVKYVNL 156 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 156 (295)
...|...|++++|+..|++..+.... +. .+|..+...+...|++++|...|+++.+. .+. +..++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999999885322 34 45777888899999999999999999874 233 46778888
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHh
Q 022531 157 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 223 (295)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 223 (295)
..+|...|+. .++.+.... ..+...|.... ....+.+++|+..+++..+. .|+...
T Consensus 160 ~~~~~~~~~~------~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 160 GVLFYNNGAD------VLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHHHHHHHHH------HHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHH------HHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 8888766553 223222222 22333333332 34456789999999998876 455443
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=2.8e-11 Score=99.05 Aligned_cols=229 Identities=10% Similarity=-0.060 Sum_probs=171.5
Q ss_pred HHHHHHhccChhHHHHHHhhcccC---CC----CHHHHHHHHHHHHccCcHHHHHHHHHHHHhC----C-CCC-CHHHHH
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLS---AK----TSETYTALLHLYAGAKWTEKAEELFERVKQS----N-LSF-NALMYN 83 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~---~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p-~~~~~~ 83 (295)
....+...|++++|...|+..... .+ ...++..+...+...|+++.|...+++..+. + ..+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344567889999999999987654 12 3568899999999999999999999987642 1 111 255788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhc---CCCCCCHHHHHH
Q 022531 84 EMMTLYMSVGQVEKVALVVEEIKRK----NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSDDWVKYVN 155 (295)
Q Consensus 84 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ 155 (295)
.+...|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...+++.... .+.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 9999999999999999999987652 1111 2356788899999999999999999998761 022334677889
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHhcCCCc----cccHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCCC-HHhHHHH
Q 022531 156 LVNIYITASHLVNAESSTLVEAEKSITQRQ----WITYDFLIILYAGLGN---KDKIDQIWKSLRMTKQKMT-SRNYICI 227 (295)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~-~~~~~~l 227 (295)
+..+|.+.|++++|.. .+++........+ ...+..+...|...++ ..+|+..+++ .+..|+ ...+..+
T Consensus 267 la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQ-FIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHTTCHHHHHH-HHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 9999999999999999 8888877543322 2334555566667788 7777777775 222222 2345678
Q ss_pred HHHHHhcCChHHHHHHHHHHhh
Q 022531 228 LSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~~~~ 249 (295)
...|...|++++|.+.|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998765
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=2.5e-10 Score=93.15 Aligned_cols=239 Identities=9% Similarity=-0.046 Sum_probs=170.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hHh
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA----LMYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPD----IFT 116 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~ 116 (295)
....+...+...|++++|...+++.....-..+. .+++.+...+...|++++|...+++...... .++ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3445566777899999999999998775422222 2567777889999999999999998765211 111 233
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcC---CCC--C-CHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC----cc
Q 022531 117 YNLWISSCAATLNIDQVKKFLDEMSCDS---GGS--D-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR----QW 186 (295)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~ 186 (295)
+..+...+...|++++|...+++..... +.+ | ...++..+...+...|++++|.. .+.+........ ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA-SARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHhhccCcHHHH
Confidence 5667778899999999999998876531 221 2 34466778889999999999999 888877644322 12
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH-HhHH-----HHHHHHHhcCChHHHHHHHHHHhhhcCCCC--CHH
Q 022531 187 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYI-----CILSSYLMLGHLKEVGEIIDQWKQSATSDF--DIS 258 (295)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~-----~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~ 258 (295)
.++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++........+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 45677888899999999999999988654222221 1221 233457799999999999998876332111 123
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 259 ACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.+..+...+...|++++|...+++..+
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567788899999999999999998764
No 84
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=9.4e-12 Score=104.32 Aligned_cols=104 Identities=10% Similarity=0.023 Sum_probs=51.8
Q ss_pred HHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT---EKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 93 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 93 (295)
+...+.+.|++++|.++|+...+.+ +...+..|...|...|+. ++|...|++..+. ++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 5666778888999999988876542 455556666777777777 8888888887754 4566666766555544
Q ss_pred -----CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 94 -----QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 94 -----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
++++|+..|++..+.|.. + .+..|...|...+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYP 120 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCC
Confidence 678888888888776542 2 4455555554443
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.36 E-value=6e-10 Score=87.02 Aligned_cols=147 Identities=11% Similarity=0.022 Sum_probs=63.1
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHH
Q 022531 98 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA 177 (295)
Q Consensus 98 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (295)
|+..|+++.+.+ .++..++..+..++...|++++|++++.+....+...-+...+..++..+.+.|+.+.|.+ .++.+
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k-~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST-IFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence 444455444433 2333333444455555555555555555543321001234444455555555555555555 45444
Q ss_pred HHhcC---CCccccHHHHHHHH--HhcC--CHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 178 EKSIT---QRQWITYDFLIILY--AGLG--NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 178 ~~~~~---~~~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
.+..+ ..+..+...|..++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33321 00122333333331 1122 455555555555432 2332222223335555555555555555443
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=5.5e-11 Score=81.74 Aligned_cols=126 Identities=9% Similarity=0.053 Sum_probs=57.2
Q ss_pred HHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 022531 14 YATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV 92 (295)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 92 (295)
|..+...+...|++++|..+|+.+....| +...+..+...+...|++++|...|+++...+ +.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 34444444455555555555544443333 34444444444444455555555555444432 22344444444444444
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 022531 93 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 141 (295)
|++++|.+.++++.+... .+..++..+...+.+.|++++|...++++.
T Consensus 83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 455555544444444311 123344444444444444444444444443
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.34 E-value=1.5e-10 Score=89.65 Aligned_cols=183 Identities=11% Similarity=-0.009 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-C---HHHHHHHHHHHHccCcHHHHHHHHHHHHhCC--CCCCHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-T---SETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNE 84 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ 84 (295)
+..+-.+...+.+.|++++|...|+.+....| + ...+..+..++.+.|++++|...|++..+.. -+....++..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33444445555555555555555555555444 2 3455555555555555555555555555431 0111334444
Q ss_pred HHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 022531 85 MMTLYMS--------VGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 155 (295)
Q Consensus 85 li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 155 (295)
+..++.. .|++++|+..|++..+.. |+ ......+. .+...... ....+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH-----HHHHHHH
Confidence 5555555 555555555555555431 21 11111000 00000000 0000134
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHhcCCC--ccccHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 022531 156 LVNIYITASHLVNAESSTLVEAEKSITQR--QWITYDFLIILYAGL----------GNKDKIDQIWKSLRMT 215 (295)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 215 (295)
+..+|.+.|++++|.. .++.+....+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAV-TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHH-HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHH-HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4566666666666666 666665544332 123445555555544 6666777777666554
No 88
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.34 E-value=2.2e-09 Score=89.93 Aligned_cols=251 Identities=12% Similarity=0.007 Sum_probs=163.7
Q ss_pred HHHHHHHHHHhccChh----HHHHHHhhcccCCCCHHHHHHHHHHHHccC---cHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 022531 13 DYATRIDLMTKVFGIH----SGERYFEGLPLSAKTSETYTALLHLYAGAK---WTEKAEELFERVKQSNLSFNALMYNEM 85 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~----~A~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l 85 (295)
....|...|...+.++ .|..+++......| ..+..|...|...| +.++|+..|++..+.| +++...+..|
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~--~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD--ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT--THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 3444555555555433 34444444443333 37777888888888 8888888888888887 4566666677
Q ss_pred HHHHHhc----CCHHHHHHHHHHHHhCCCCCChHhHHHHHHH-H--HccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 022531 86 MTLYMSV----GQVEKVALVVEEIKRKNVVPDIFTYNLWISS-C--AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 158 (295)
Q Consensus 86 i~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (295)
...|... +++++|+.+|++.. . -+...+..+... + ...+++++|...|++..+. | +...+..+..
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~ 291 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGK 291 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHH
Confidence 7777654 68888888888876 2 344555556555 3 4578888888888887765 3 5566667777
Q ss_pred HHHhcC-----chhhHHHHHHHHHHHhcCCCccccHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCCHHhHHHHHH
Q 022531 159 IYITAS-----HLVNAESSTLVEAEKSITQRQWITYDFLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILS 229 (295)
Q Consensus 159 ~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 229 (295)
+|. .| ++++|.+ ++.+.. ..+...+..|...|.. ..+.++|..+|++..+.|. | .....|..
T Consensus 292 ~y~-~G~g~~~d~~~A~~-~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~ 362 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEA-HFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQ 362 (452)
T ss_dssp HHH-HCSSSCCCHHHHHH-HHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHH
T ss_pred HHH-cCCCCCCCHHHHHH-HHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHH
Confidence 776 44 8888888 666554 3355666667666655 3488888888888877663 2 23445555
Q ss_pred HHHh----cCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 230 SYLM----LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 230 ~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.|.. ..+.++|..+|+...+.+ .++.......+......++..+|..+.++-.+
T Consensus 363 ~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 363 LFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6653 457888888888887765 34444443334334445566777777766544
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=1.5e-10 Score=79.49 Aligned_cols=129 Identities=11% Similarity=0.059 Sum_probs=76.1
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 125 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 125 (295)
.|..+...+...|++++|..+|+++.+.+ +.+..++..+...+...|++++|...++++.+.+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 45556666666666666666666665543 33455666666666666666666666666655422 23445555666666
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 022531 126 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 179 (295)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (295)
..|++++|...++++... .+.+..++..+..++.+.|++++|.. .+..+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIE-YYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHH-HHHHHHc
Confidence 666666666666666553 13344555556666666666666666 5555444
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=9.3e-11 Score=92.49 Aligned_cols=237 Identities=12% Similarity=-0.042 Sum_probs=167.2
Q ss_pred hHHHHHHhhcccCCCC-HHHHHHHHHHHHcc--C-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022531 28 HSGERYFEGLPLSAKT-SETYTALLHLYAGA--K-WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 103 (295)
Q Consensus 28 ~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~--~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 103 (295)
.+|.+++.+....-+. ...| .+ + +. + ++++|...|++. ...|...|++++|...|+
T Consensus 2 ~~a~~~~~~a~k~~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CCHHHHHHHHHHHSSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 3566666666655333 2223 22 2 32 2 589999998876 346778999999999998
Q ss_pred HHHhC----CCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcC---CCCC-CHHHHHHHHHHHHhc-CchhhHHHHH
Q 022531 104 EIKRK----NVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDS---GGSD-DWVKYVNLVNIYITA-SHLVNAESST 173 (295)
Q Consensus 104 ~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~ 173 (295)
+..+. |-.++ ..+|+.+..+|.+.|++++|+..|++..... |... ...+++.+..+|... |++++|.. .
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~-~ 140 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID-C 140 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH-H
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH-H
Confidence 87653 32222 5689999999999999999999998876531 1111 145788999999996 99999999 8
Q ss_pred HHHHHHhcCCCc-----cccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHH------hHHHHHHHHHhcCChHHHHH
Q 022531 174 LVEAEKSITQRQ-----WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR------NYICILSSYLMLGHLKEVGE 242 (295)
Q Consensus 174 ~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~~~~~~~A~~ 242 (295)
+++.....+..+ ..++..+...+...|++++|+..|++..+........ .|..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888776543221 3568889999999999999999999988764332221 46678888999999999999
Q ss_pred HHHHHhhhcCCCCC---HHHHHHHHHHHH--ccCChHHHHHHHHHHHh
Q 022531 243 IIDQWKQSATSDFD---ISACNRLLGAFS--DVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 243 ~~~~~~~~~~~~~~---~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~ 285 (295)
.|++..+.....++ ...+..++.+|. ..+++++|...|+++..
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 99998763211111 123455666665 56778899988877654
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.31 E-value=1.4e-09 Score=84.19 Aligned_cols=187 Identities=9% Similarity=-0.050 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-hHhH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPD-IFTY 117 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~ 117 (295)
+...+..+...+.+.|++++|...|+++.+.. +.+ ..++..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 67777888888888888888888888888764 223 56788888888888888888888888877522 112 3456
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccH
Q 022531 118 NLWISSCAA--------TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY 189 (295)
Q Consensus 118 ~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (295)
..+..++.. .|++++|...|+++.... +.+......+.... .... .+ ...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~-------~~~~-~~-----------~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIR-------ELRA-KL-----------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHH-------HHHH-HH-----------HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHH-------HHHH-HH-----------HHHH
Confidence 667777777 888888888888887752 22222222211110 0011 00 1124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCC--CHHhHHHHHHHHHhc----------CChHHHHHHHHHHhhhc
Q 022531 190 DFLIILYAGLGNKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLML----------GHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 190 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------~~~~~A~~~~~~~~~~~ 251 (295)
..+...|...|++++|+..|+++.+..... ....+..+..+|... |++++|...|+.+.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 567788899999999999999988763211 234566777888766 88999999999998864
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=3e-10 Score=84.90 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (295)
+..+|.+.|++++|+..|++..+... -+...+..+...+...|++++|...|++.... .|.+..++..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 55555555666666665555555321 13445555555555556666666655555543 133444555555554443
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.27 E-value=3.9e-10 Score=99.30 Aligned_cols=173 Identities=8% Similarity=-0.085 Sum_probs=137.0
Q ss_pred HccCcHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc
Q 022531 55 AGAKWTEKAEELFERVK--------QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 126 (295)
Q Consensus 55 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 126 (295)
...|++++|++.+++.. +.. +.+...+..+...+.+.|++++|++.|++..+... -+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67899999999999988 432 44677888999999999999999999999887532 256788888889999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHH
Q 022531 127 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 206 (295)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 206 (295)
.|++++|...|++..+. .+.+...+..+..++.+.|++++ .+ .+++..+..+. +...|..+..++...|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~-~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HK-FYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TC-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HH-HHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998875 24567788899999999999999 88 88888776644 6678889999999999999999
Q ss_pred HHHHHHHhccCCCC-HHhHHHHHHHHHhcCC
Q 022531 207 QIWKSLRMTKQKMT-SRNYICILSSYLMLGH 236 (295)
Q Consensus 207 ~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~ 236 (295)
+.|++..+. .|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999987654 455 3455566666655444
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=2.1e-10 Score=83.34 Aligned_cols=163 Identities=9% Similarity=-0.061 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL-YM 90 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~ 90 (295)
.+..+...+.+.|++++|...|+......| +...+..+...+...|++++|...|++..... |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 345566677788888888888888777656 67788888888888888888888888776553 344433332212 12
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHH
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 170 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (295)
..+...+|+..|++..+... -+...+..+...+...|++++|...|+++.+......+...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22223346677777666422 14666777777777778888888887777764211123456777777777777777777
Q ss_pred HHHHHHHHH
Q 022531 171 SSTLVEAEK 179 (295)
Q Consensus 171 ~~~~~~~~~ 179 (295)
. .+.+...
T Consensus 165 ~-~y~~al~ 172 (176)
T 2r5s_A 165 S-KYRRQLY 172 (176)
T ss_dssp H-HHHHHHH
T ss_pred H-HHHHHHH
Confidence 7 6655443
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.27 E-value=1.2e-09 Score=85.42 Aligned_cols=180 Identities=14% Similarity=0.068 Sum_probs=133.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 022531 63 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPDIFTYNLWISSCAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 63 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 141 (295)
|+..|++..+.+ +++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+++.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677888877765 56677777888999999999999999999877654 2356778889999999999999999999998
Q ss_pred hcCCCCC-----CHHHHHHHHHHH--HhcC--chhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHH
Q 022531 142 CDSGGSD-----DWVKYVNLVNIY--ITAS--HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL 212 (295)
Q Consensus 142 ~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 212 (295)
+. .| +..+...++.++ ...| ++.+|.. +|+++....+ +..+-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~-~f~El~~~~p--~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFY-YYEELSQTFP--TWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHH-HHHHHHTTSC--SHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHH-HHHHHHHhCC--CcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 75 35 355556666663 3334 8999999 9998866543 3222334444788999999999999976
Q ss_pred Hhcc---------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 213 RMTK---------QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 213 ~~~~---------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
.+.. -.-++.++..+|......|+ +|.+++.++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5531 02345566566666666776 7899999998854
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=4.1e-11 Score=84.70 Aligned_cols=141 Identities=11% Similarity=-0.076 Sum_probs=79.0
Q ss_pred HHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 022531 20 LMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 98 (295)
Q Consensus 20 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 98 (295)
.+...|++++|+..++......| +...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 33445566666666666655544 34455556666666666666666666666553 33556666666666666666666
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 022531 99 ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF-LDEMSCDSGGSDDWVKYVNLVNIYITAS 164 (295)
Q Consensus 99 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (295)
+..|++..+.... +..++..+...+.+.|++++|... +++..+. .|.++.+|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 6666666653221 345566666666666666544433 3555542 2334455554444444444
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.25 E-value=4e-10 Score=97.28 Aligned_cols=161 Identities=6% Similarity=-0.138 Sum_probs=120.3
Q ss_pred ccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022531 24 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 102 (295)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 102 (295)
.|++++|...|++..+..| +...|..+...+...|++++|.+.|++..+.. +.+..++..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999999888777 68899999999999999999999999999875 456889999999999999999999999
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---CchhhHHHHHHHHHHH
Q 022531 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA---SHLVNAESSTLVEAEK 179 (295)
Q Consensus 103 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 179 (295)
++..+... .+...+..+..++.+.|++++|.+.|++..+. .+.+..++..+..++... |+.++|.+ .+++..+
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~-~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSA-QVRAAVA 156 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHH-HHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHH-HHHHHHh
Confidence 99888632 25778888999999999999999999998875 245678888999999999 99999999 8888877
Q ss_pred hcCCCccccHH
Q 022531 180 SITQRQWITYD 190 (295)
Q Consensus 180 ~~~~~~~~~~~ 190 (295)
..+. +...|.
T Consensus 157 ~~p~-~~~~~~ 166 (568)
T 2vsy_A 157 QGVG-AVEPFA 166 (568)
T ss_dssp HTCC-CSCHHH
T ss_pred cCCc-ccChHH
Confidence 6654 333443
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.25 E-value=1.9e-10 Score=91.34 Aligned_cols=131 Identities=8% Similarity=-0.022 Sum_probs=55.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhc---CCCCC-CHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCc-----c
Q 022531 116 TYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ-----W 186 (295)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~ 186 (295)
+|..+...|.+.|++++|+..|++.... .+.+. ...++..+..+|.. |++++|.. .+++........+ .
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~-~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH-LYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH-HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH-HHHHHHHHHHhCCChhHHH
Confidence 3444444455555555555555443321 01000 12334444445544 55555555 4444433221110 2
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhccC----CCC-HHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 187 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ----KMT-SRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
.++..+...|...|++++|+..|++...... .+. ...+..+..++...|++++|...|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344445555555555555555554433210 000 1123334444444455555555555544
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=3.9e-10 Score=84.28 Aligned_cols=165 Identities=11% Similarity=0.025 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHH----------------HHHHHHccCcHHHHHHHHHHHHhC
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTA----------------LLHLYAGAKWTEKAEELFERVKQS 73 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~ 73 (295)
...+-.....+...|++++|...|+......| +...|.. +..++.+.|++++|...|++..+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445556677899999999999999988777 5677777 999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC--HHHHHHHHHHHhhcCCCCCCHH
Q 022531 74 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN--IDQVKKFLDEMSCDSGGSDDWV 151 (295)
Q Consensus 74 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 151 (295)
+ |-+...+..+...+...|++++|+..|++..+... -+..++..+...+...|+ .+.+...++.... ..|...
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 158 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---PTKMQY 158 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---CCHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---CCchhH
Confidence 5 45788999999999999999999999999998633 256778888888765553 3445555555432 223333
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhc
Q 022531 152 KYVNLVNIYITASHLVNAESSTLVEAEKSI 181 (295)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (295)
.+.....++...|++++|.. .+++..+..
T Consensus 159 a~~~~g~~~~~~~~~~~A~~-~~~~al~l~ 187 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARN-SLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHH-HHHHHTTTS
T ss_pred HHHHHHHHHHHccCHHHHHH-HHHHHHHhC
Confidence 34445556666777888888 777665544
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=3.7e-10 Score=99.43 Aligned_cols=174 Identities=8% Similarity=-0.025 Sum_probs=143.8
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 022531 90 MSVGQVEKVALVVEEIK--------RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 161 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (295)
...|++++|++.+++.. +. .+.+...+..+..++.+.|++++|+..|+++.+. .+.+..++..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 77899999999999998 43 2235677888999999999999999999999875 3567889999999999
Q ss_pred hcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHH
Q 022531 162 TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG 241 (295)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 241 (295)
+.|++++|.. .|++..+..+. +...|..+..++...|++++ ++.|++..+.. .-+...+..+..++.+.|++++|.
T Consensus 479 ~~g~~~~A~~-~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATK-HFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHH-HHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHH-HHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999 99988876654 67788999999999999999 99999988764 335677888999999999999999
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHccCC
Q 022531 242 EIIDQWKQSATSDFDISACNRLLGAFSDVGL 272 (295)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 272 (295)
+.|++..+.. +.+...|..+..++...|+
T Consensus 555 ~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 9999988743 3356778888888876554
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.23 E-value=3.4e-09 Score=80.11 Aligned_cols=198 Identities=7% Similarity=-0.095 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH----HHHH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA----LMYN 83 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~ 83 (295)
..+-.+...+.+.|++++|...|+.+....|+ ...+..+..++.+.|++++|+..|+++.+.. |+. .++.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 33444445555555666666665555544332 2345555555555555555555555555432 211 1233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 022531 84 EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 163 (295)
Q Consensus 84 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (295)
.+..++...+.. .+ ..|..+...+...|++++|...|+++.+. .|.+..+..+... .
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l 139 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L 139 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H
Confidence 333333222110 00 01112222333467888999999888874 2333333322111 1
Q ss_pred CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH----HhHHHHHHHHHhcCChHH
Q 022531 164 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS----RNYICILSSYLMLGHLKE 239 (295)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~ 239 (295)
+....... .....+...|.+.|++++|+..|+++.+. .|+. ..+..+..+|.+.|+.++
T Consensus 140 ~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 140 VFLKDRLA---------------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp HHHHHHHH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHH---------------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 01110000 01124566788899999999999988776 3432 456678889999999999
Q ss_pred HHHHHHHHhhhc
Q 022531 240 VGEIIDQWKQSA 251 (295)
Q Consensus 240 A~~~~~~~~~~~ 251 (295)
|.+.++.+...+
T Consensus 203 A~~~~~~l~~~~ 214 (225)
T 2yhc_A 203 AEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhC
Confidence 999999887754
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.22 E-value=3.8e-09 Score=79.83 Aligned_cols=190 Identities=8% Similarity=-0.005 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH-HHHH
Q 022531 78 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-P-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW-VKYV 154 (295)
Q Consensus 78 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 154 (295)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++.+.....+.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4566777888899999999999999999875322 1 13567778889999999999999999988752222221 2444
Q ss_pred HHHHHHHh------------------cCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 022531 155 NLVNIYIT------------------ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 216 (295)
Q Consensus 155 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 216 (295)
.+..++.+ .|++++|.. .+..+.+..+. +...+..... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~P~-~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS-DFSKLVRGYPN-SQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHH-HHHHHHTTCTT-CTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH-HHHHHHHHCcC-ChhHHHHHHH----------HHHHHHHHH---
Confidence 55555544 345555555 55554444322 1122211110 000000000
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 022531 217 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAFSDVGLTEKANEFHMLLLQKN 287 (295)
Q Consensus 217 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 287 (295)
.....+...|.+.|++++|...|+++.+.....| ....+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112466788899999999999999988652211 12568889999999999999999999988754
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=2.1e-08 Score=78.89 Aligned_cols=234 Identities=8% Similarity=-0.031 Sum_probs=169.3
Q ss_pred ccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccC--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---C
Q 022531 24 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAK--WTEKAEELFERVKQSNLSFNALMYNEMMTLY----MSV---G 93 (295)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---~ 93 (295)
....++|+.+++.+....| +..+|+.-...+...| ++++++++++.+.... +-+..+|+.--..+ ... +
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 46 EEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 3445689999999888877 6778888888888888 8999999999988765 44566777655555 445 7
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCc------
Q 022531 94 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID--QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH------ 165 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 165 (295)
++++++++++++.+...+ +..+|+--.-.+.+.|.++ +++++++++... .+-+-.+|+.-...+.+.+.
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 888999999998886443 6777777777777788887 889999988875 35577777777666666666
Q ss_pred hhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHH-HHHHHHHHHhcc--CCCCHHhHHHHHHHHHhcCChHHHHH
Q 022531 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK-IDQIWKSLRMTK--QKMTSRNYICILSSYLMLGHLKEVGE 242 (295)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~ 242 (295)
++++.+ .+..+....+. |...|+-+-..+.+.|+... +.++..++.+.+ -..++..+..+...|.+.|+.++|.+
T Consensus 202 ~~eEl~-~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELN-YVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHH-HHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH-HHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 778888 77777666654 77888887777777777444 555666655432 12355667778888888889999999
Q ss_pred HHHHHhhhcCCCCCHHHHHHHH
Q 022531 243 IIDQWKQSATSDFDISACNRLL 264 (295)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~ 264 (295)
+++.+.+.-- +.....|+..+
T Consensus 280 ~~~~l~~~~D-pir~~yW~~~~ 300 (306)
T 3dra_A 280 VYDLLKSKYN-PIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHTTC-GGGHHHHHHHH
T ss_pred HHHHHHhccC-hHHHHHHHHHH
Confidence 9988875311 23444554443
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=4.7e-10 Score=88.20 Aligned_cols=165 Identities=12% Similarity=-0.004 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHH-HH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL-WI 121 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li 121 (295)
+...+..+...+...|++++|...|++..+.. +-+...+..+...+.+.|++++|...+++.... .|+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 56677888888999999999999999988775 456788999999999999999999999988764 345443322 22
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC-ccccHHHHHHHHHhcC
Q 022531 122 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLG 200 (295)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 200 (295)
..+.+.++.+.|...+++.... .+.+...+..+...+...|++++|.. .+.++....+.. +...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~-~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALE-LLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHH-HHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3366778888889999888875 35678888899999999999999999 888888776543 3667889999999999
Q ss_pred CHHHHHHHHHHHH
Q 022531 201 NKDKIDQIWKSLR 213 (295)
Q Consensus 201 ~~~~a~~~~~~m~ 213 (295)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999998887654
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.21 E-value=2.9e-09 Score=79.72 Aligned_cols=175 Identities=10% Similarity=0.020 Sum_probs=88.4
Q ss_pred HHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHH
Q 022531 30 GERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG----QVEKVALVVEEI 105 (295)
Q Consensus 30 A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~m 105 (295)
|.+.|+...+. -+...+..|...|...+++++|...|++..+.| ++..+..|...|.. + ++++|+++|++.
T Consensus 5 A~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 44444444432 345555556666656666666666666665554 45555555555555 4 566666666665
Q ss_pred HhCCCCCChHhHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHh----cCchhhHHHHHHHH
Q 022531 106 KRKNVVPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGS-DDWVKYVNLVNIYIT----ASHLVNAESSTLVE 176 (295)
Q Consensus 106 ~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 176 (295)
.+.| +...+..|...|.. .+++++|...|++..+. +.. .+...+..|..+|.. .+++++|.. ++.+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~-~~~~ 154 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASE-YFKG 154 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH-HHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH-HHHH
Confidence 5542 33445555555544 55566666666665543 210 014445555555555 455555555 5554
Q ss_pred HHHhcCCCccccHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcc
Q 022531 177 AEKSITQRQWITYDFLIILYAGL-G-----NKDKIDQIWKSLRMTK 216 (295)
Q Consensus 177 ~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~ 216 (295)
..+.. .+...+..|...|... | +.++|..+|++..+.|
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44431 1222344444444321 1 4555555555544443
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=8e-10 Score=86.87 Aligned_cols=169 Identities=9% Similarity=-0.080 Sum_probs=126.0
Q ss_pred CChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHH
Q 022531 112 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 191 (295)
Q Consensus 112 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 191 (295)
.+...+..+...+.+.|++++|...|++.... .+.+..++..+..++.+.|++++|.. .++.+....+. .......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~-~l~~~~~~~p~-~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEA-VLXTIPLQDQD-TRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHH-HHTTSCGGGCS-HHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHH-HHHhCchhhcc-hHHHHHH
Confidence 34566777778888899999999999988875 35567788888899999999999999 77766554432 1222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccC
Q 022531 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG 271 (295)
Q Consensus 192 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 271 (295)
....+...++.++|++.+++..... +.+...+..+...+...|++++|.+.|.++.+......+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334566777888888888877764 345667778888999999999999999998886532223678888999999999
Q ss_pred ChHHHHHHHHHHHh
Q 022531 272 LTEKANEFHMLLLQ 285 (295)
Q Consensus 272 ~~~~a~~~~~~m~~ 285 (295)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999888887654
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.21 E-value=4.6e-09 Score=78.62 Aligned_cols=177 Identities=10% Similarity=0.061 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC----CHHHHHHH
Q 022531 61 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL----NIDQVKKF 136 (295)
Q Consensus 61 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~ 136 (295)
.+|++.|++..+.| ++..+..|...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45777888888876 78888888888888999999999999888864 55667777777777 6 88999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHh----cCchhhHHHHHHHHHHHhcCC-CccccHHHHHHHHHh----cCCHHHHHH
Q 022531 137 LDEMSCDSGGSDDWVKYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQ-RQWITYDFLIILYAG----LGNKDKIDQ 207 (295)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~ 207 (295)
|++.... + +..++..+..+|.. .+++++|.+ ++.+..+.++. .+...+..|...|.. .++.++|+.
T Consensus 76 ~~~A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~-~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 76 AEKAVEA-G---SKSGEIVLARVLVNRQAGATDVAHAIT-LLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHH-HHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHH-HHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9888764 2 55667777777776 778888888 77776655432 124567777777777 777888888
Q ss_pred HHHHHHhccCCCCHHhHHHHHHHHHhc-C-----ChHHHHHHHHHHhhhc
Q 022531 208 IWKSLRMTKQKMTSRNYICILSSYLML-G-----HLKEVGEIIDQWKQSA 251 (295)
Q Consensus 208 ~~~~m~~~~~~~~~~~~~~li~~~~~~-~-----~~~~A~~~~~~~~~~~ 251 (295)
+|++..+. ..+...+..|...|... | +.++|..+|+...+.+
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88877665 22334555566666543 2 7888888888777765
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.19 E-value=1.1e-09 Score=86.98 Aligned_cols=201 Identities=7% Similarity=-0.071 Sum_probs=142.5
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHH
Q 022531 57 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 136 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 136 (295)
.|++++|.+++++..+.. +.. + +...+++++|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 467778888887766532 111 0 11146778888777765 4466778888888888
Q ss_pred HHHHhhcC---CCC-CCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCC---C--ccccHHHHHHHHHhcCCHHHHHH
Q 022531 137 LDEMSCDS---GGS-DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ---R--QWITYDFLIILYAGLGNKDKIDQ 207 (295)
Q Consensus 137 ~~~~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~a~~ 207 (295)
|.+..... +.+ ....+|+.+..+|.+.|++++|.. .+++....... + -..++..+...|.. |++++|++
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~-~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ-YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88765421 111 124578888999999999999999 88876654221 1 13567788888888 99999999
Q ss_pred HHHHHHhccCCC-----CHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCC----HHHHHHHHHHHHccCChHHHHH
Q 022531 208 IWKSLRMTKQKM-----TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD----ISACNRLLGAFSDVGLTEKANE 278 (295)
Q Consensus 208 ~~~~m~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~ 278 (295)
.|++..+..... ...++..+...|.+.|++++|++.|++..+.....++ ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999876532111 1356778899999999999999999998764211111 2367777788888999999999
Q ss_pred HHHHHH
Q 022531 279 FHMLLL 284 (295)
Q Consensus 279 ~~~~m~ 284 (295)
.|++.+
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999988
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.18 E-value=2.9e-10 Score=80.30 Aligned_cols=146 Identities=9% Similarity=-0.068 Sum_probs=92.7
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC
Q 022531 50 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 129 (295)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 129 (295)
|...+...|++++|+..++...... +-+...+..+...|.+.|++++|++.|++..+... -+..+|..+..++.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence 3445556677777877777766542 22344566677778888888888888887776532 256677777777788888
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcC
Q 022531 130 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG 200 (295)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 200 (295)
+++|+..|++..+. .+.+..++..+..+|.+.|++++|.+.++++..+..+. +..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 88888888777764 24456677777777777777776655134555554432 4455555555554444
No 110
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.18 E-value=2.1e-08 Score=78.97 Aligned_cols=165 Identities=4% Similarity=-0.116 Sum_probs=108.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCHH----HHHHHHHHHHhcCchhhHHHHHHHHHHHhcCC-Ccc----ccHH
Q 022531 120 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWV----KYVNLVNIYITASHLVNAESSTLVEAEKSITQ-RQW----ITYD 190 (295)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~----~~~~ 190 (295)
.+..+...|++++|..++++........|+.. .+..+...+...+++++|.. .+......... ++. .+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~-~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCIL-ELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHH-HHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHH-HHHHHHHHhcccccHHHHHHHHH
Confidence 35567777888888888887776433333321 23345666666778888888 77777663322 221 2577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----cCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHhhhc----CCCCCHHHH
Q 022531 191 FLIILYAGLGNKDKIDQIWKSLRMT-----KQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSA----TSDFDISAC 260 (295)
Q Consensus 191 ~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~ 260 (295)
.+...|...|++++|+..|++..+. +..+. ..++..+...|.+.|++++|.+.+++..+.. ....-..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 7777888888888888888877531 11111 2356678888888899999988888775422 111125678
Q ss_pred HHHHHHHHccCC-hHHHHHHHHHHHh
Q 022531 261 NRLLGAFSDVGL-TEKANEFHMLLLQ 285 (295)
Q Consensus 261 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 285 (295)
..+..+|.+.|+ +++|.+.+++.+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888888888885 5888888887754
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=5.7e-10 Score=81.01 Aligned_cols=79 Identities=10% Similarity=-0.057 Sum_probs=45.3
Q ss_pred HHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 205 IDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 205 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
++..+++..+.. +-+...+..+..++...|++++|...|+++.+......+...+..+..++...|+.++|...|++.+
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 455555554432 1234555566666666666666666666666543211234456666666666677666666666554
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.17 E-value=1.7e-09 Score=93.30 Aligned_cols=154 Identities=7% Similarity=-0.072 Sum_probs=118.0
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHH
Q 022531 57 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 136 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 136 (295)
.|++++|.+.|++..+.. +.+...|..+...+.+.|++++|.+.|++..+... .+..++..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 44688999999999999999999999999998643 3577899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 022531 137 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL---GNKDKIDQIWKSLR 213 (295)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~ 213 (295)
+++..+. .+.+...+..+..+|.+.|++++|.+ .+++..+..+. +...+..+...+... |+.++|.+.+++..
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAA-AYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999885 35567889999999999999999999 88888776543 567888899999999 99999999999987
Q ss_pred hcc
Q 022531 214 MTK 216 (295)
Q Consensus 214 ~~~ 216 (295)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 764
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.15 E-value=9.8e-08 Score=75.11 Aligned_cols=224 Identities=10% Similarity=-0.023 Sum_probs=174.1
Q ss_pred HccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChHhHHHHHHHH----Hcc-
Q 022531 55 AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG--QVEKVALVVEEIKRKNVVPDIFTYNLWISSC----AAT- 127 (295)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~- 127 (295)
.+...-++|+.++++++..+ +-+..+|+.--..+...| +++++++.++.+.....+ +..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 33444579999999999875 446778999888888888 999999999999986443 445566544444 444
Q ss_pred --CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh--hHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCC--
Q 022531 128 --LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV--NAESSTLVEAEKSITQRQWITYDFLIILYAGLGN-- 201 (295)
Q Consensus 128 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-- 201 (295)
+++++++.+++.+... .+-+..+|+.-.-++.+.|.++ ++.+ ++..+.+..+. |-..|+.-.....+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~-~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELS-FVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred ccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 7899999999999985 4678888888888888899988 9999 88888876654 77788877766777776
Q ss_pred ----HHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHH-HHHHHHHHhhhc-CCCCCHHHHHHHHHHHHccCChHH
Q 022531 202 ----KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE-VGEIIDQWKQSA-TSDFDISACNRLLGAFSDVGLTEK 275 (295)
Q Consensus 202 ----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 275 (295)
++++++.++.+.... .-|...|+.+-..+.+.|+... +..+..++.+.+ ....+...+..+..+|.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 899999999888775 3467778888888888887444 556666665432 113577889999999999999999
Q ss_pred HHHHHHHHHh
Q 022531 276 ANEFHMLLLQ 285 (295)
Q Consensus 276 a~~~~~~m~~ 285 (295)
|.++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.09 E-value=3.2e-08 Score=73.80 Aligned_cols=128 Identities=13% Similarity=-0.016 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV 92 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 92 (295)
.+..+...+...|++++|...|+... .|+...|..+...+.+.|++++|...|++..+.. +.+...|..+..+|...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 45566777888899999999999886 3678889999999999999999999999888764 45678888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCC--------------C-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 93 GQVEKVALVVEEIKRKNVV--------------P-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
|++++|++.|++..+.... | ....+..+..++.+.|++++|...|++....
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999988875321 1 1266777888888899999999999888864
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.09 E-value=2.4e-08 Score=78.64 Aligned_cols=162 Identities=8% Similarity=-0.098 Sum_probs=74.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCChH----hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC----HHHHHHH
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRKNV-VPDIF----TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD----WVKYVNL 156 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 156 (295)
+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|+..|+++.......++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445555555555555555544211 11211 1223444444445555555555555442111111 1245555
Q ss_pred HHHHHhcCchhhHHHHHHHHHHH---h--cCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHhc----cCCCC-HHhHH
Q 022531 157 VNIYITASHLVNAESSTLVEAEK---S--ITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMT----KQKMT-SRNYI 225 (295)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~ 225 (295)
..+|...|++++|.. .+....+ . ...+ ...++..+...|.+.|++++|.+.+++..+. +..+. ...|.
T Consensus 162 g~~y~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 162 ANIYAENGYLKKGID-LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHTTCHHHHHH-HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHcCCHHHHHH-HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 555555555555555 5544442 0 1111 1234555555566666666666655554321 11111 34455
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHh
Q 022531 226 CILSSYLMLGH-LKEVGEIIDQWK 248 (295)
Q Consensus 226 ~li~~~~~~~~-~~~A~~~~~~~~ 248 (295)
.+..+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 56666666663 466666665554
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.07 E-value=4.7e-09 Score=82.17 Aligned_cols=95 Identities=11% Similarity=0.016 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 124 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 124 (295)
..+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+... .+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 344444444444555555555555444432 22344444444444444555555554444444311 1233444444444
Q ss_pred HccCCHHHHHHHHHHHh
Q 022531 125 AATLNIDQVKKFLDEMS 141 (295)
Q Consensus 125 ~~~~~~~~a~~~~~~~~ 141 (295)
...|++++|...|++..
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444443
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=2.9e-08 Score=74.07 Aligned_cols=133 Identities=15% Similarity=0.036 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 124 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 124 (295)
..+..+...+...|++++|...|++.. .|+..+|..+...|.+.|++++|+..|++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345567778888899999999998773 5678889999999999999999999999888753 23567788888889
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCC--------------CHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCC
Q 022531 125 AATLNIDQVKKFLDEMSCDSGGSD--------------DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 183 (295)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (295)
...|++++|...|++........+ ...++..+..+|.+.|++++|.. .++......+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-QLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH-HHHHHHHcCcc
Confidence 999999999999988877421111 22677788888888888888888 77777665543
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.05 E-value=2.3e-09 Score=75.49 Aligned_cols=124 Identities=10% Similarity=-0.031 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
...+..+.+++...+.+++ +....| +...+..+...+.+.|++++|...|++....+ |.+...|..+..+|
T Consensus 9 ~~~~~~l~~~~~~~~~l~~-------al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~ 80 (151)
T 3gyz_A 9 ESISTAVIDAINSGATLKD-------INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIY 80 (151)
T ss_dssp CHHHHHHHHHHHTSCCTGG-------GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHH-------HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445566666655544443 344456 67789999999999999999999999999875 55788999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
...|++++|+..|++..+.... +...|..+..++.+.|++++|...|++....
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999886432 5678888999999999999999999998875
No 119
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.05 E-value=2.8e-08 Score=86.67 Aligned_cols=236 Identities=8% Similarity=0.008 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhcc-------ChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHH-HHHHHHHhCCCCCCHHHH
Q 022531 12 SDYATRIDLMTKVF-------GIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAE-ELFERVKQSNLSFNALMY 82 (295)
Q Consensus 12 ~~~~~li~~~~~~~-------~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~ 82 (295)
..|...+..--..+ ..+.+..+|++.....| +...|...+..+...|+.++|. .+|++.... .|.+...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 34555555543332 12345667887777656 7889999999998999988996 999999875 45677778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------hHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 022531 83 NEMMTLYMSVGQVEKVALVVEEIKRKN---------VVPD------------IFTYNLWISSCAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 83 ~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~li~~~~~~~~~~~a~~~~~~~~ 141 (295)
-..+....+.|++++|.++|+++.+.. -.|+ ..+|...+....+.|..+.|..+|.++.
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888999999999999999987631 0132 2367777888888899999999999988
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-
Q 022531 142 CDSGGSDDWVKYVNLVNIYITAS-HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM- 219 (295)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~- 219 (295)
+. ...+...+|...+..-.+.+ +.+.|.. +|+...+..+. +...|...+......|+.+.|..+|++.......+
T Consensus 462 ~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~-ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 462 RL-KKLVTPDIYLENAYIEYHISKDTKTACK-VLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HT-GGGSCTHHHHHHHHHHHTTTSCCHHHHH-HHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred Hh-cCCCChHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 74 11223445544444444444 5899999 88888877543 55667778887788899999999999887764221
Q ss_pred -CHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 220 -TSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 220 -~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
....|...+..-.+.|+.+.+.++.+++.+..
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 23457777888888999999999999998865
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.03 E-value=1.1e-08 Score=72.91 Aligned_cols=130 Identities=14% Similarity=0.005 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 123 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 123 (295)
...|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+... .+..++..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 3455666666666677777777776666543 33566666666667777777777777766665421 245566666666
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCCHHHH--HHHHHHHHhcCchhhHHHHHHHHHH
Q 022531 124 CAATLNIDQVKKFLDEMSCDSGGSDDWVKY--VNLVNIYITASHLVNAESSTLVEAE 178 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (295)
+...|++++|...|+++.... +.+...+ ......+.+.|++++|.. .+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIA-GDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHH-cccchH
Confidence 677777777777777666541 2233333 233333556677777766 555443
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.01 E-value=1.9e-09 Score=86.67 Aligned_cols=151 Identities=5% Similarity=-0.086 Sum_probs=117.4
Q ss_pred cChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHH
Q 022531 25 FGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---------------ALMYNEMMTL 88 (295)
Q Consensus 25 ~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~li~~ 88 (295)
+++++|...|+......| +...|..+...+.+.|++++|...|++..+.. +.+ ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665554445 57788899999999999999999999988764 222 4788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhh
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 168 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (295)
|.+.|++++|+..|++..+... .+...|..+..++...|++++|...|+++... .+.+..++..+..++.+.|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888532 36778888888899999999999999998875 34567788888888888888888
Q ss_pred HHHHHHHHHHH
Q 022531 169 AESSTLVEAEK 179 (295)
Q Consensus 169 a~~~~~~~~~~ 179 (295)
|....+..++.
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 85435555554
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.00 E-value=9.7e-09 Score=72.28 Aligned_cols=97 Identities=9% Similarity=-0.133 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHH
Q 022531 150 WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILS 229 (295)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 229 (295)
...+..+...+.+.|++++|.. .+.......+. +...|..+..+|...|++++|++.|++..... +-+...+..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~-~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEV-FFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 3445555555566666666666 55555544332 44555555556666666666666666555543 223344555555
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 022531 230 SYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~ 249 (295)
+|...|++++|.+.|++..+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665555
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=1.2e-08 Score=69.52 Aligned_cols=109 Identities=8% Similarity=-0.010 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 123 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 123 (295)
...+......+.+.|++++|+..|++.++.+ +.+..+|..+..+|.+.|++++|+..|++..+.+. .+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 4456666666666666666666666666553 34566666666666666666666666666665422 235556666666
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 022531 124 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 156 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 156 (295)
+...|++++|...|++..+. .|.+..+...+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l 121 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV--DPSNEEAREGV 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHH
Confidence 66666777777666666653 23344444433
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.00 E-value=8.5e-09 Score=76.25 Aligned_cols=156 Identities=12% Similarity=0.025 Sum_probs=89.4
Q ss_pred HhccChhHHHHHHhhcccCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCH
Q 022531 22 TKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQ----SNLS-FNALMYNEMMTLYMSVGQV 95 (295)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~-p~~~~~~~li~~~~~~~~~ 95 (295)
...|++++|.++++.+.... ....++..+...+...|++++|...+++... .+.. ....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35677777777444333322 2456777777777777888887777777654 1111 1234666777777777777
Q ss_pred HHHHHHHHHHHhC----CCCC--ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcC---CCC-CCHHHHHHHHHHHHhcCc
Q 022531 96 EKVALVVEEIKRK----NVVP--DIFTYNLWISSCAATLNIDQVKKFLDEMSCDS---GGS-DDWVKYVNLVNIYITASH 165 (295)
Q Consensus 96 ~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~~~ 165 (295)
++|...+++..+. +-.| ....+..+...+...|++++|...+++..... +.+ ....++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777765542 1111 13346666666777777777777777654310 111 112234556666666667
Q ss_pred hhhHHHHHHHHHH
Q 022531 166 LVNAESSTLVEAE 178 (295)
Q Consensus 166 ~~~a~~~~~~~~~ 178 (295)
+++|.+ .+.+..
T Consensus 163 ~~~A~~-~~~~al 174 (203)
T 3gw4_A 163 LLEAQQ-HWLRAR 174 (203)
T ss_dssp HHHHHH-HHHHHH
T ss_pred HHHHHH-HHHHHH
Confidence 766666 555443
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.99 E-value=6.4e-09 Score=73.10 Aligned_cols=108 Identities=9% Similarity=-0.074 Sum_probs=78.3
Q ss_pred HhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 022531 34 FEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP 112 (295)
Q Consensus 34 ~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 112 (295)
|+.+....| +...+..+...+.+.|++++|...|++....+ +.+...|..+..+|...|++++|+..|++..+... .
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~ 87 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-X 87 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-T
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-C
Confidence 444444445 56677777778888888888888888877664 44677777888888888888888888888776532 2
Q ss_pred ChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 113 DIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 113 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
+...+..+..++...|++++|...|++....
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777777788888888888888877664
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.99 E-value=3.9e-07 Score=72.60 Aligned_cols=224 Identities=6% Similarity=0.010 Sum_probs=153.2
Q ss_pred HHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CH
Q 022531 20 LMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAK-WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV-G-QV 95 (295)
Q Consensus 20 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~-~~ 95 (295)
...+.+..++|+++++.+....| +..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+.+. + ++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 33445556789999999888877 6778888887777777 5999999999998875 55778888887777776 6 78
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHH--------HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCc--
Q 022531 96 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID--------QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH-- 165 (295)
Q Consensus 96 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 165 (295)
++++++++++.+...+ |..+|+--.-.+.+.+.++ ++++.++++.+. .+-|..+|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccc
Confidence 8999999999886443 6667776555555555555 888888888875 35677788877777777765
Q ss_pred -----hhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcc----
Q 022531 166 -----LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK--------------------DKIDQIWKSLRMTK---- 216 (295)
Q Consensus 166 -----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~~---- 216 (295)
++++.+ .+.......+. |...|+-+-..+.+.|.. .+..++...+...+
T Consensus 219 ~~~~~~~eELe-~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELI-YILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 567777 66666665543 677777766656555543 22333333332221
Q ss_pred -CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 217 -QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 217 -~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
-.+++..+..++..|...|+.++|.++++.+.+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 024455566677777777777778877777754
No 127
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.99 E-value=3.8e-08 Score=85.86 Aligned_cols=217 Identities=8% Similarity=-0.032 Sum_probs=165.0
Q ss_pred CCHHHHHHHHHHHHhccChhHHH-HHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC---------CCC
Q 022531 9 LSDSDYATRIDLMTKVFGIHSGE-RYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSN---------LSF 77 (295)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~-~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~p 77 (295)
-++..|-..+..+.+.|+.++|. ++|+......| +...|...+...-+.|++++|.++|+++.... -.|
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 35666777778888889999997 99999887767 67778889999999999999999999988641 013
Q ss_pred C------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChHhHHHHHHHHHcc-CCHHHHHHHHHHHhhc
Q 022531 78 N------------ALMYNEMMTLYMSVGQVEKVALVVEEIKRK-NVVPDIFTYNLWISSCAAT-LNIDQVKKFLDEMSCD 143 (295)
Q Consensus 78 ~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~ 143 (295)
+ ..+|...+....+.|+.+.|.++|.+..+. +. +....|...+..-.+. ++++.|.++|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2 346888888888899999999999999876 21 1233343333222333 4599999999998885
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC--ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH
Q 022531 144 SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR--QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 221 (295)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 221 (295)
++.+...+...+......|+.+.|.. +|++.....+.+ ....|...+..-...|+.+.+..+.+++.+. .|+.
T Consensus 500 --~p~~~~~w~~y~~fe~~~~~~~~AR~-lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 500 --FATDGEYINKYLDFLIYVNEESQVKS-LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp --HTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred --CCCchHHHHHHHHHHHhCCCHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 45566777888888889999999999 999888766532 4467888888888899999999999999887 4554
Q ss_pred HhHHHHHHHH
Q 022531 222 RNYICILSSY 231 (295)
Q Consensus 222 ~~~~~li~~~ 231 (295)
.....++.-|
T Consensus 575 ~~~~~f~~ry 584 (679)
T 4e6h_A 575 NKLEEFTNKY 584 (679)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHHh
Confidence 4444444444
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.99 E-value=1.6e-08 Score=68.20 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 123 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 123 (295)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566666666777777777777777666543 3356666677777777777777777777766542 2245566666667
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 022531 124 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 162 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (295)
+...|++++|...++++... .+.+...+..+..++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHh
Confidence 77777777777777776654 23344455555554443
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.98 E-value=3.8e-08 Score=70.11 Aligned_cols=96 Identities=8% Similarity=-0.088 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (295)
.+..+...+...|++++|...|++..+... .+..++..+...+...|++++|...+++.... .+.+..++..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 344444444455555555555554444311 13344444444455555555555555554442 123344444444555
Q ss_pred HhcCchhhHHHHHHHHHHHh
Q 022531 161 ITASHLVNAESSTLVEAEKS 180 (295)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~ 180 (295)
...|++++|.. .+.+....
T Consensus 92 ~~~~~~~~A~~-~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALR-DYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHH-HHHHHHHH
T ss_pred HHhccHHHHHH-HHHHHHHh
Confidence 55555555555 44444443
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.98 E-value=1.2e-07 Score=74.65 Aligned_cols=168 Identities=6% Similarity=-0.131 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-h----HhHHHHHHHHHccCCHHHHHHHHHHHhhcCC--CCCC--H
Q 022531 80 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-I----FTYNLWISSCAATLNIDQVKKFLDEMSCDSG--GSDD--W 150 (295)
Q Consensus 80 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~ 150 (295)
..+...+..+...|++++|.+.+++..+.....+ . ..+..+...+...|++++|+..+++...... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4455667778888999999988887776532211 1 2233455566778889999998888765311 1111 3
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHH---hcCCC---ccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc----CCC-
Q 022531 151 VKYVNLVNIYITASHLVNAESSTLVEAEK---SITQR---QWITYDFLIILYAGLGNKDKIDQIWKSLRMTK----QKM- 219 (295)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~- 219 (295)
.+++.+...|...|++++|.. .+.+..+ ..+.. ...++..+...|...|++++|+..+++..+.. ...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~-~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGID-LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 477888888888999999988 7777763 22111 12477788888888899998888888765432 111
Q ss_pred CHHhHHHHHHHHHhcCChHHH-HHHHHHHh
Q 022531 220 TSRNYICILSSYLMLGHLKEV-GEIIDQWK 248 (295)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A-~~~~~~~~ 248 (295)
-..+|..+..+|.+.|+.++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 145677788888888888888 66676654
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.98 E-value=1.6e-07 Score=73.83 Aligned_cols=168 Identities=7% Similarity=-0.042 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA------LMYNEMMTLYMSVGQVEKVALVVEEIKRKNV---VPD- 113 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~- 113 (295)
...+...+..+...|++++|.+.+++..+..-. .. ..+..+...+...|++++|+..+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 445666788889999999999999988765321 22 2344566677888999999999999875322 122
Q ss_pred -hHhHHHHHHHHHccCCHHHHHHHHHHHh---hcCCCCC--CHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC---
Q 022531 114 -IFTYNLWISSCAATLNIDQVKKFLDEMS---CDSGGSD--DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR--- 184 (295)
Q Consensus 114 -~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 184 (295)
..+++.+...|...|++++|...|+++. ...+..+ ...++..+..+|.+.|++++|.. .+++........
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~-~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY-QVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH-HHHHHHHHHHhcCcH
Confidence 4578889999999999999999999987 3211112 12588899999999999999999 888776543211
Q ss_pred --ccccHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 022531 185 --QWITYDFLIILYAGLGNKDKI-DQIWKSLR 213 (295)
Q Consensus 185 --~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 213 (295)
-..+|..+...|...|+.++| ...+++..
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 145678888899999999999 77677654
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.98 E-value=2.1e-08 Score=68.35 Aligned_cols=95 Identities=8% Similarity=-0.053 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 91 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 91 (295)
.+......+.+.|++++|++.|++..+..| +...|..+..++.+.|++++|+..|++.++.+ +.+...|..+..+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 455566666666666666666666655555 56666666666666666666666666666553 3345666666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 022531 92 VGQVEKVALVVEEIKRK 108 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~ 108 (295)
.|++++|++.|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 66666666666666653
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.97 E-value=4.6e-08 Score=65.86 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
..+..+...+...|++++|.+.|+.+....| +..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 4455555555555566666555555544433 44555555555555556666665555555442 234555555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 022531 91 SVGQVEKVALVVEEIKR 107 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~ 107 (295)
..|++++|...|+++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55566666655555554
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.96 E-value=2.5e-08 Score=68.12 Aligned_cols=118 Identities=9% Similarity=-0.070 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
+...|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|++.+++..+... .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 45556666666666666666666666665543 23455666666666666666666666666655321 23455555666
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (295)
++.+.|++++|...|++.... .+.+...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 666666666666666665553 1233444555555554443
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.96 E-value=4.8e-09 Score=82.16 Aligned_cols=97 Identities=7% Similarity=-0.056 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
+...+..+...+.+.|++++|...|+......| +...|..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345566666777777777777777777666555 56677777777777777777777777776653 3456667777777
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 022531 89 YMSVGQVEKVALVVEEIKR 107 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~ 107 (295)
|...|++++|+..|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776655
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.95 E-value=1.5e-06 Score=69.30 Aligned_cols=233 Identities=11% Similarity=-0.008 Sum_probs=169.1
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRKNVVPDIFTYNLWISSC 124 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 124 (295)
.++.+-....+.+..++|++++++++..+ +-+..+|+.--..+...| .++++++.++.+.....+ +..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34444444455566689999999999876 456778998888888888 599999999999987544 667788777776
Q ss_pred Hcc-C-CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh--------hHHHHHHHHHHHhcCCCccccHHHHHH
Q 022531 125 AAT-L-NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV--------NAESSTLVEAEKSITQRQWITYDFLII 194 (295)
Q Consensus 125 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~ 194 (295)
.+. + ++++++++++.+... .+-+..+|+.-.-++.+.|.++ ++.+ ...++.+..+. |...|+....
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe-~~~k~I~~dp~-N~SAW~~R~~ 209 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD-WCNEMLRVDGR-NNSAWGWRWY 209 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH-HHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHH-HHHHHHHhCCC-CHHHHHHHHH
Confidence 666 6 889999999999974 4667888887766676767776 8888 78888776654 7788888877
Q ss_pred HHHhcCC-------HHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCCh--------------------HHHHHHHHHH
Q 022531 195 LYAGLGN-------KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL--------------------KEVGEIIDQW 247 (295)
Q Consensus 195 ~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~--------------------~~A~~~~~~~ 247 (295)
.+.+.+. ++++++.+++..... .-|...|+-+-..+.+.|+. .....+...+
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM 288 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence 7777776 688999998887764 33556676666666665543 2333333333
Q ss_pred hhhc----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 248 KQSA----TSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 248 ~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.... ...++......|++.|...|+.++|.++++.+.+
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3321 1136778888999999999999999999999863
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.94 E-value=3.3e-08 Score=73.04 Aligned_cols=160 Identities=8% Similarity=-0.053 Sum_probs=96.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc---CCC-CCCHHHHHHHHHHHHhcCc
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGG-SDDWVKYVNLVNIYITASH 165 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~~~ 165 (295)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... .+. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568888888855555432 2234566777777888888888888888776551 111 1234456677777888888
Q ss_pred hhhHHHHHHHHHHHh---cC-CC--ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CCCH----HhHHHHHHHHHhc
Q 022531 166 LVNAESSTLVEAEKS---IT-QR--QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-KMTS----RNYICILSSYLML 234 (295)
Q Consensus 166 ~~~a~~~~~~~~~~~---~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~ 234 (295)
+++|.. .+.+.... .. .+ ....+..+...+...|++++|.+.+++...... ..+. .++..+...+...
T Consensus 82 ~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 WDAARR-CFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 888888 66665543 11 11 123456666677777777777777776643211 1111 2245566667777
Q ss_pred CChHHHHHHHHHHhhhc
Q 022531 235 GHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 235 ~~~~~A~~~~~~~~~~~ 251 (295)
|++++|.+.+++..+..
T Consensus 161 g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDIF 177 (203)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 77777777777665543
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.94 E-value=2.3e-08 Score=67.97 Aligned_cols=120 Identities=11% Similarity=-0.009 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+... .+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 45667777777777788888888887777653 34567777777777788888888888877776422 24566777777
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (295)
.+...|++++|...|++.... .+.+...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 777888888888888777764 234566667777777776654
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.93 E-value=1.4e-08 Score=73.47 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=91.4
Q ss_pred HhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 022531 22 TKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL-YMSVGQV--EK 97 (295)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~--~~ 97 (295)
...|++++|...|+......| +...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456788888888888776666 77888888888888999999999998887764 3467778888888 7788887 88
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 98 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 98 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
|...|++..+... .+...+..+...+...|++++|...|+++...
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888877532 24667777888888889999999888888775
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.93 E-value=5.6e-08 Score=66.04 Aligned_cols=115 Identities=9% Similarity=-0.072 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
..+..+...+...|++++|...|+......| +...|..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444444555555555555555555444333 44445555555555555555555555544432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
..|++++|...|++..+... .+...+..+..++.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence 55555555555555444321 13333444444444333
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.91 E-value=4.4e-08 Score=68.19 Aligned_cols=109 Identities=12% Similarity=-0.049 Sum_probs=77.9
Q ss_pred HHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 022531 33 YFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV 111 (295)
Q Consensus 33 ~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 111 (295)
.|+......| +...+..+...+.+.|++++|...|++....+ +.+...|..+..+|.+.|++++|+..|++..+...
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 83 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI- 83 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-
Confidence 4555555455 55667777777888888888888888877664 44677777888888888888888888888777532
Q ss_pred CChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 112 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 112 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.+...+..+..++...|++++|...|++....
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24566777777788888888888888877654
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.90 E-value=6e-08 Score=66.22 Aligned_cols=98 Identities=8% Similarity=-0.104 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
+...+..+...+.+.|++++|...|+......| +...|..+...+...|++++|...|++..+.. +.+..++..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344555566666666666666666666555544 55566666666666666666666666655543 2345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 022531 89 YMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~ 108 (295)
+.+.|++++|.+.|++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 66666666666666665553
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.90 E-value=7.3e-09 Score=76.58 Aligned_cols=161 Identities=4% Similarity=-0.137 Sum_probs=104.0
Q ss_pred HHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC--------------
Q 022531 14 YATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN-------------- 78 (295)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-------------- 78 (295)
.+..+......|.+++|.+.|+.-....+ ....+..+...+...|++++|...|++..+.. +.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHH
Confidence 34445555667788888888876544333 56678888889999999999999999988753 112
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 022531 79 --ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 156 (295)
Q Consensus 79 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 156 (295)
..+|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++.... .+.+..++..+
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 162 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHH
Confidence 2678888888888899999999888887753 235677888888888889999999888888764 24466677777
Q ss_pred HHHHHhcCchhhHHHHHHHHHH
Q 022531 157 VNIYITASHLVNAESSTLVEAE 178 (295)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~ 178 (295)
..++...++.+++....+..++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 163 ELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777766631344443
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=1e-07 Score=73.51 Aligned_cols=186 Identities=11% Similarity=-0.008 Sum_probs=113.1
Q ss_pred hccChhHHHHHHhhcccCCC-CHHHHHHH-------HHHHHccCcHHHHHHHHHHHHhCCCCCC----------------
Q 022531 23 KVFGIHSGERYFEGLPLSAK-TSETYTAL-------LHLYAGAKWTEKAEELFERVKQSNLSFN---------------- 78 (295)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------- 78 (295)
..++.+.|.+.|..+....| ....|..+ ...+.+.++..+++..+.+-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 56778888888888777766 56777777 4555555555555554444433 1121
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC--H
Q 022531 79 ------ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD--W 150 (295)
Q Consensus 79 ------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 150 (295)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHH
Confidence 1233445566777778888888877776643 43335555555677777888888777654432 1 111 2
Q ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCc--cccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 151 VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ--WITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
.++..+..++.+.|++++|+. .+++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~-~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAER-RLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-HHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHH-HHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 356667777777777777777 6666653221132 223445555666777777777777777665
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.84 E-value=1.4e-07 Score=75.80 Aligned_cols=95 Identities=6% Similarity=-0.125 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 022531 187 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 266 (295)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (295)
.+|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 456666666666777777777776666553 2345556666667777777777777777666643 2355566666666
Q ss_pred HHccCChHHH-HHHHHHHH
Q 022531 267 FSDVGLTEKA-NEFHMLLL 284 (295)
Q Consensus 267 ~~~~g~~~~a-~~~~~~m~ 284 (295)
+...|+.++| ...++.|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6667766666 34455443
No 146
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.82 E-value=3.5e-07 Score=75.91 Aligned_cols=97 Identities=9% Similarity=-0.140 Sum_probs=47.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-----HHhHHHHHHHHHhcCChHHHHHHHHHHhhhc--CCCCC---H
Q 022531 188 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-----SRNYICILSSYLMLGHLKEVGEIIDQWKQSA--TSDFD---I 257 (295)
Q Consensus 188 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~---~ 257 (295)
++..+...|...|++++|..+++++...-...+ ...+..++..|...|++++|..+++...... ...|. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 344455555556666666665555432211111 1234555666666666666666665543321 11111 2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 258 SACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
..+..+...+...|++++|...|.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334445555556666666665555543
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=1.5e-07 Score=68.08 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=95.5
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHH-HHhcCCH
Q 022531 124 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL-YAGLGNK 202 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~ 202 (295)
+...|++++|...+++.... .+.+..++..+..+|...|++++|.. .+.......+. +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~-~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLL-AYRQALQLRGE-NAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHhcCCc
Confidence 35678889999999988875 35677888899999999999999999 88888776643 56677777777 7788998
Q ss_pred --HHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 203 --DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 203 --~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
++|...+++..... +.+...+..+...|...|++++|...|++..+..
T Consensus 96 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999888764 3345677788889999999999999999988754
No 148
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=7.8e-06 Score=69.06 Aligned_cols=170 Identities=9% Similarity=-0.084 Sum_probs=103.3
Q ss_pred CCCCHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCc-HHHHHHHHHHHHhC-CC-CCCHHHHH
Q 022531 7 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW-TEKAEELFERVKQS-NL-SFNALMYN 83 (295)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~-~~-~p~~~~~~ 83 (295)
+.--...|...+..+-. |+++.|..+|+......|+...|...+....+.+. .+....+|+..... |. +++...|.
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 34445677777777755 78888888888888877888888888877766663 35566777776643 32 33667777
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHhCCCCCChHhHH-----------------------------------------
Q 022531 84 EMMTLYM----SVGQVEKVALVVEEIKRKNVVPDIFTYN----------------------------------------- 118 (295)
Q Consensus 84 ~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~----------------------------------------- 118 (295)
..+..+. ..++.+.+.++|++........-...|.
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 7776544 2356777777887777631110011111
Q ss_pred -------HHHHHHHcc--CC-----HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Q 022531 119 -------LWISSCAAT--LN-----IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 180 (295)
Q Consensus 119 -------~li~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (295)
..+.--... +- .+.+..+|+++... .+.+...|...+..+.+.|+.+.|.. ++++....
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~-i~erAi~~ 242 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKK-VVERGIEM 242 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhC
Confidence 111110000 00 23345667776653 34556677777777788888888888 78777766
No 149
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.80 E-value=1.3e-08 Score=85.34 Aligned_cols=151 Identities=5% Similarity=-0.043 Sum_probs=112.0
Q ss_pred ChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHH
Q 022531 26 GIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---------------ALMYNEMMTLY 89 (295)
Q Consensus 26 ~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~li~~~ 89 (295)
++++|...|+......| ....|..+...+.+.|++++|...|++..+.. +.+ ..+|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666655544344 56688889999999999999999999988753 122 57888899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhH
Q 022531 90 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (295)
.+.|++++|+..|++..+... .+...|..+..+|...|++++|...|+++.+. .+.+..++..+..++.+.++.+++
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887533 35777888888999999999999999998874 345667788888888888888887
Q ss_pred HHHHHHHHHHh
Q 022531 170 ESSTLVEAEKS 180 (295)
Q Consensus 170 ~~~~~~~~~~~ 180 (295)
.+..+..|+..
T Consensus 405 ~~~~~~~~f~k 415 (457)
T 1kt0_A 405 DRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHhh
Confidence 76455555443
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=2.4e-07 Score=61.61 Aligned_cols=96 Identities=9% Similarity=-0.016 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 124 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 124 (295)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+... .+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345555555556666666666666655443 23455555666666666666666666666555321 2344555555666
Q ss_pred HccCCHHHHHHHHHHHhh
Q 022531 125 AATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~ 142 (295)
...|++++|...+++...
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 666666666666666554
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=2e-07 Score=63.21 Aligned_cols=96 Identities=10% Similarity=-0.034 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 124 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 124 (295)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++..+... .+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 345555555555566666666665555443 33455555555556666666666666655555321 1344555555555
Q ss_pred HccCCHHHHHHHHHHHhh
Q 022531 125 AATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~ 142 (295)
...|++++|...|++...
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 556666666665555544
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=1.2e-07 Score=66.57 Aligned_cols=95 Identities=11% Similarity=-0.076 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHH
Q 022531 152 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY 231 (295)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 231 (295)
.+..+...+.+.|++++|.. .+.......+. +...|..+..+|...|++++|+..|++..... +.+...+..+..+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHX-VFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHH-HHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34444444445555555555 44444333322 33444444445555555555555555444432 11233444455555
Q ss_pred HhcCChHHHHHHHHHHhh
Q 022531 232 LMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~ 249 (295)
...|++++|.+.|+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555444
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.79 E-value=1.4e-07 Score=64.10 Aligned_cols=97 Identities=8% Similarity=-0.028 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
...+..+...+.+.|++++|...|+......| +...|..+..++.+.|++++|+..|++..+.+ +.+...|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 45678888999999999999999999888777 78999999999999999999999999999875 45688999999999
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 022531 90 MSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~ 108 (295)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999998875
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.79 E-value=1.8e-07 Score=66.76 Aligned_cols=99 Identities=14% Similarity=0.015 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++..+... .+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45566666777777777777777777766653 33566677777777777777777777777666432 24556666777
Q ss_pred HHHccCCHHHHHHHHHHHhhc
Q 022531 123 SCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~ 143 (295)
++...|++++|...|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777776654
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.79 E-value=4.8e-07 Score=60.09 Aligned_cols=97 Identities=12% Similarity=-0.035 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
...+..+...+...|++++|...|+......| +...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34455566666666666666666666655544 55566666666666666666666666666543 23455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 022531 90 MSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~ 108 (295)
...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666666554
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.78 E-value=1.4e-05 Score=63.30 Aligned_cols=230 Identities=8% Similarity=-0.035 Sum_probs=155.6
Q ss_pred HHHHHHHHH---HhccChh-HHHHHHhhcccCCC-CHHHHHHHHHHHHccCc----------HHHHHHHHHHHHhCCCCC
Q 022531 13 DYATRIDLM---TKVFGIH-SGERYFEGLPLSAK-TSETYTALLHLYAGAKW----------TEKAEELFERVKQSNLSF 77 (295)
Q Consensus 13 ~~~~li~~~---~~~~~~~-~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p 77 (295)
.|..+.+.+ .+.|.++ +|+.+++.+....| +..+|+.--..+...+. +++++.+++.+.... +-
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PK 106 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PK 106 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CC
Confidence 444444433 3455554 78999999988877 56677765554444333 678899999888765 55
Q ss_pred CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC-HHHHHHHHHHHhhcCCCCCCHHHHH
Q 022531 78 NALMYNEMMTLYMSVG--QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN-IDQVKKFLDEMSCDSGGSDDWVKYV 154 (295)
Q Consensus 78 ~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (295)
+..+|+.-...+.+.+ .+++++.+++++.+.... |..+|+--.-.+...|. ++++++.+..+... .+-|..+|+
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~ 183 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWH 183 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 7889988888888877 489999999999886543 77778777777777787 58999999998875 356777777
Q ss_pred HHHHHHHhc--------------CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhc-----------CCHHHHHHHH
Q 022531 155 NLVNIYITA--------------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL-----------GNKDKIDQIW 209 (295)
Q Consensus 155 ~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~ 209 (295)
.....+.+. +.++++.+ .+.......+. |...|+-+--.+.+. +.++++++.+
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle-~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELE-LVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 766666555 45677888 77777665544 667776544444443 3467778888
Q ss_pred HHHHhccCCCCH-HhHHHHH---HHHHhcCChHHHHHHHHHHhhh
Q 022531 210 KSLRMTKQKMTS-RNYICIL---SSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 210 ~~m~~~~~~~~~-~~~~~li---~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
+++.+. .|+. ..+..++ ......+..+++...+.++.+-
T Consensus 262 ~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 262 KELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 877765 4443 2222221 1122355666777777777764
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=2.2e-07 Score=63.27 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----hHhHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV--VPD----IFTYN 118 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~ 118 (295)
..+..+...+.+.|++++|+..|++.++.. |-+..+|+.+..+|.+.|++++|++.|++..+... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345556666666666666666666666553 33456666666666666666666666666554211 011 12455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 119 LWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.+..++...|++++|++.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555666666666666666665543
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.75 E-value=3e-07 Score=60.48 Aligned_cols=99 Identities=9% Similarity=-0.072 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChHhHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP--DIFTYNLW 120 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l 120 (295)
+...|..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|.+.|++..+... . +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHH
Confidence 45566667777777777777777777776653 34566677777777777777777777777766421 2 35566667
Q ss_pred HHHHHcc-CCHHHHHHHHHHHhhc
Q 022531 121 ISSCAAT-LNIDQVKKFLDEMSCD 143 (295)
Q Consensus 121 i~~~~~~-~~~~~a~~~~~~~~~~ 143 (295)
..++.+. |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7777777777777664
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.75 E-value=1.1e-07 Score=66.21 Aligned_cols=96 Identities=6% Similarity=-0.060 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
..+..+...+.+.|++++|...|+......| +...|..+..++.+.|++++|+..|++....+ +.+...+..+..+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3455677788999999999999999988777 78899999999999999999999999999875 456788999999999
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 022531 91 SVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~ 108 (295)
..|++++|.+.|++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998874
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.74 E-value=4.8e-07 Score=59.50 Aligned_cols=100 Identities=10% Similarity=-0.006 Sum_probs=78.9
Q ss_pred ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCC--CHHHHHH
Q 022531 185 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF--DISACNR 262 (295)
Q Consensus 185 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~ 262 (295)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence 44566777778888888888888888877654 3356677778888888999999999998888753 34 5778888
Q ss_pred HHHHHHcc-CChHHHHHHHHHHHhcC
Q 022531 263 LLGAFSDV-GLTEKANEFHMLLLQKN 287 (295)
Q Consensus 263 l~~~~~~~-g~~~~a~~~~~~m~~~g 287 (295)
+..++... |++++|.+.+++..+.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 88889999 99999999999888743
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.74 E-value=1.2e-07 Score=64.55 Aligned_cols=105 Identities=7% Similarity=-0.058 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC--CCCC----HHHHHH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFN----ALMYNE 84 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~~~~~ 84 (295)
..+..+...+.+.|++++|+..|+...+..| +...|+.+..+|.+.|++++|++.|++.++.+ ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4677889999999999999999999888777 78899999999999999999999999987642 1111 246788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHH
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN 118 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 118 (295)
+..++...|++++|++.|++.... .||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 888999999999999999998774 45655443
No 162
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=7.5e-07 Score=68.72 Aligned_cols=129 Identities=5% Similarity=-0.130 Sum_probs=99.1
Q ss_pred HHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 022531 14 YATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMS 91 (295)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~ 91 (295)
.-.+...+...|++++|.++|+.+...+|+......+...+.+.+++++|+..|+...... .|. ..++..+..++.+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 4456677888999999999999998877844377777778889999999999998665542 121 3467788888999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 92 VGQVEKVALVVEEIKRKNVVPD--IFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999998875433253 335566677788899999999999998875
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.73 E-value=2.7e-07 Score=63.48 Aligned_cols=98 Identities=10% Similarity=0.025 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
+...|..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|++..+... .+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 56666677777777777777777777766653 34566677777777777777777777777666432 24556666777
Q ss_pred HHHccCCHHHHHHHHHHHhh
Q 022531 123 SCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~ 142 (295)
++...|++++|...|++...
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777776654
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.72 E-value=1.1e-07 Score=64.54 Aligned_cols=112 Identities=12% Similarity=0.014 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----hHhHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV--VPD----IFTYN 118 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~ 118 (295)
..|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445556666666666666666666665543 33455666666666666666666666666554321 111 44555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 022531 119 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160 (295)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (295)
.+..++.+.|++++|...|+++... .|+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 6666666666666666666666654 23444444444433
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=6.9e-07 Score=62.08 Aligned_cols=98 Identities=9% Similarity=-0.058 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN 118 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 118 (295)
+...+..+...+...|++++|...|++..+.. |+ ...|..+..+|...|++++|+..+++..+... .+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence 56677777777777777777777777777653 44 56677777777777777777777777766422 2456666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 119 LWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.+..++...|++++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6777777777777777777777664
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.70 E-value=3.8e-07 Score=61.85 Aligned_cols=97 Identities=10% Similarity=-0.006 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNL--SFN----ALMYNE 84 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 84 (295)
..+..+...+...|++++|...|+......| +...+..+...+...|++++|...+++.....- .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3455566666666666666666666655544 555666666666666666666666666654420 111 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
+..++...|++++|.+.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 666666666666666666666653
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.68 E-value=8.9e-07 Score=63.06 Aligned_cols=97 Identities=6% Similarity=-0.085 Sum_probs=52.0
Q ss_pred hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHH
Q 022531 114 IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI 193 (295)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 193 (295)
...+..+...+.+.|++++|+..|++.... .+.+...|..+..+|.+.|++++|.. .+.+.....+. +...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAE-DAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCC-CHHHHHHHH
Confidence 344555555555666666666666655553 13345555555555555666666655 55555444322 344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 022531 194 ILYAGLGNKDKIDQIWKSLRM 214 (295)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~ 214 (295)
.+|...|++++|.+.|++..+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 555555555555555555544
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.67 E-value=5.5e-07 Score=61.83 Aligned_cols=97 Identities=7% Similarity=-0.056 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
+...+..+...+...|++++|...|+......| +...|..+..++...|++++|...|++..+.+ +.+...|..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 455566666666666666666666666555544 45566666666666666666666666665543 3345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 022531 89 YMSVGQVEKVALVVEEIKR 107 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~ 107 (295)
+...|++++|+..|++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666554
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.8e-06 Score=59.91 Aligned_cols=97 Identities=8% Similarity=-0.073 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM 85 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 85 (295)
+...+..+...+...|++++|...|+......|+ ...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 3445555566666666666666666666555554 4555666666666666666666666655542 2345556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 022531 86 MTLYMSVGQVEKVALVVEEIKR 107 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~ 107 (295)
..++...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666555
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.66 E-value=2e-07 Score=62.85 Aligned_cols=94 Identities=11% Similarity=-0.084 Sum_probs=47.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc
Q 022531 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 126 (295)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 126 (295)
+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3344445555555555555555555442 234455555555555555555555555555543211 33444555555555
Q ss_pred cCCHHHHHHHHHHHhh
Q 022531 127 TLNIDQVKKFLDEMSC 142 (295)
Q Consensus 127 ~~~~~~a~~~~~~~~~ 142 (295)
.|++++|...|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.64 E-value=1e-06 Score=64.88 Aligned_cols=98 Identities=11% Similarity=-0.022 Sum_probs=57.4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 022531 187 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 266 (295)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (295)
..|..+..+|...|++++|+..+++..... +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 455566666777777777777777766553 3345566667777777777777777777776643 2355666667777
Q ss_pred HHccCChHHHH-HHHHHHHhcC
Q 022531 267 FSDVGLTEKAN-EFHMLLLQKN 287 (295)
Q Consensus 267 ~~~~g~~~~a~-~~~~~m~~~g 287 (295)
+...++.+++. ..+..|...|
T Consensus 166 ~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 77666666665 4455554433
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.64 E-value=4.8e-06 Score=69.04 Aligned_cols=192 Identities=8% Similarity=-0.045 Sum_probs=90.1
Q ss_pred HHHHhccChhHHHHHHhhcccCCCCH------------------HHHHHHHHHHHccCcHHHHHHHHHHHHhCC-CCCCH
Q 022531 19 DLMTKVFGIHSGERYFEGLPLSAKTS------------------ETYTALLHLYAGAKWTEKAEELFERVKQSN-LSFNA 79 (295)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~~p~~------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~ 79 (295)
..+.+.|++++|.+.|..+....|+. ..+..++..|...|++++|.+.+.++...- -.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 44556677777777776665543210 124555666666666666666666554321 00111
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcC-CC---
Q 022531 80 ----LMYNEMMTLYMSVGQVEKVALVVEEIKR----KNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDS-GG--- 146 (295)
Q Consensus 80 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~--- 146 (295)
.+.+.+-..+...|++++|..++++... .+..+. ..++..+...+...|++++|..+++++.... +.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1122222333344556666666555432 122222 2344555555666666666666665554321 11
Q ss_pred CCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhc---CCCc---cccHHHHHHHHHhcCCHHHHHHHHHH
Q 022531 147 SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI---TQRQ---WITYDFLIILYAGLGNKDKIDQIWKS 211 (295)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~ 211 (295)
+....++..++..|...|++++|.. .+....... ..|. ...+..+...+...|++++|...|.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKA-SLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1112345555555666666666665 444443221 1110 12233344444455555555555543
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.62 E-value=1.1e-06 Score=61.77 Aligned_cols=133 Identities=17% Similarity=0.133 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCC-c----cccHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----H
Q 022531 152 KYVNLVNIYITASHLVNAESSTLVEAEKSITQR-Q----WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-MT----S 221 (295)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~ 221 (295)
++..+...+...|++++|.. .+.+........ + ..++..+...+...|++++|.+.+++....... ++ .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVI-AHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34444455555555555555 444443322110 0 124445555566666666666666654332100 11 2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCC----CCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 222 RNYICILSSYLMLGHLKEVGEIIDQWKQSATSD----FDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
..+..+...+...|++++|.+.+++..+..... ....++..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345556667777777777777777665421101 1134566777778888888888888877664
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.59 E-value=1.3e-06 Score=58.77 Aligned_cols=96 Identities=7% Similarity=-0.138 Sum_probs=75.1
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 022531 187 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 266 (295)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (295)
..+..+...+.+.|++++|+..|++..... +-+...+..+..++...|++++|+..|++..+.. +.+...+..+..+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~ 94 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVS 94 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 345566677788888888888888887753 3356667778888888888888888888888754 3466778888888
Q ss_pred HHccCChHHHHHHHHHHHh
Q 022531 267 FSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 267 ~~~~g~~~~a~~~~~~m~~ 285 (295)
+...|++++|...+++.++
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888876
No 175
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.56 E-value=9.8e-05 Score=62.38 Aligned_cols=174 Identities=11% Similarity=0.005 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHH------------------------
Q 022531 97 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK------------------------ 152 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------------------ 152 (295)
.+..+|+++.... +.+...|...+..+.+.|++++|..+|++.... |.+...
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence 3455666655532 234555666666667777888888888777653 223222
Q ss_pred ----------------HHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHh-cCCHHHHHHHHHHHHhc
Q 022531 153 ----------------YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG-LGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 153 ----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~ 215 (295)
|...+....+.+..+.|.. ++... . .+..+...|......-.. .++.+.|..+|+...+.
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~-i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRK-LFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHH-HHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 2222223333445555555 55554 1 111111222211111111 22466666666665543
Q ss_pred cCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 022531 216 KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 284 (295)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 284 (295)
. .-++..+...++.....|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++.
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 1122233444555555666666666666641 234556666655555677776666666665
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.53 E-value=2e-07 Score=62.45 Aligned_cols=82 Identities=16% Similarity=0.065 Sum_probs=35.4
Q ss_pred cChhHHHHHHhhcccC---CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 022531 25 FGIHSGERYFEGLPLS---AK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 100 (295)
Q Consensus 25 ~~~~~A~~~~~~~~~~---~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 100 (295)
|++++|+..|++.... .| +...|..+..++...|++++|+..|++..+.. +-+..++..+..++.+.|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444443 12 33444444444444444444444444444432 2234444444444444444444444
Q ss_pred HHHHHHh
Q 022531 101 VVEEIKR 107 (295)
Q Consensus 101 ~~~~m~~ 107 (295)
.|++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.53 E-value=1.8e-06 Score=58.46 Aligned_cols=91 Identities=7% Similarity=-0.087 Sum_probs=42.9
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hHhHHHHHHH
Q 022531 50 LLHLYAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD---IFTYNLWISS 123 (295)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~ 123 (295)
+...+...|++++|...|++..+.. +.+. ..+..+..++.+.|++++|...|++..+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444444555555555555544432 1111 24444555555555555555555555443211 1 2334444555
Q ss_pred HHccCCHHHHHHHHHHHhh
Q 022531 124 CAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~ 142 (295)
+.+.|++++|...|+++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=0.00019 Score=56.93 Aligned_cols=220 Identities=10% Similarity=-0.060 Sum_probs=155.7
Q ss_pred HccCcH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 022531 55 AGAKWT-EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ----------VEKVALVVEEIKRKNVVPDIFTYNLWISS 123 (295)
Q Consensus 55 ~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 123 (295)
.+.|.+ ++|+++++.+...+ |-+..+|+.--..+...+. +++++.+++.+.....+ +..+|+.-.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 345554 48999999999886 4456677765444444333 67899999998886443 66778777777
Q ss_pred HHccC--CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhc-
Q 022531 124 CAATL--NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH-LVNAESSTLVEAEKSITQRQWITYDFLIILYAGL- 199 (295)
Q Consensus 124 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 199 (295)
+.+.+ .+++++.+++.+... .+-+..+|+.-.-++...|. ++++.+ .+..+....+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~-~~~~~I~~~p~-N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA-FTDSLITRNFS-NYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHCSC-CHHHHHHHHHHHHHHS
T ss_pred HhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHH-HHHHHHHHCCC-CHHHHHHHHHHHHHhh
Confidence 77777 489999999999985 36688888888888888888 589999 88888876654 777888766655554
Q ss_pred -------------CCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhc-----------CChHHHHHHHHHHhhhcCCCC
Q 022531 200 -------------GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML-----------GHLKEVGEIIDQWKQSATSDF 255 (295)
Q Consensus 200 -------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~ 255 (295)
+.++++++.+....... +-|...|+-+-..+.+. +.++++++.++++.+.. |
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~---p 269 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE---P 269 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC---T
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC---c
Confidence 45788899998887764 33555565444444444 45789999999998854 4
Q ss_pred CHHHHHHHHH-----HHHccCChHHHHHHHHHHHh
Q 022531 256 DISACNRLLG-----AFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 256 ~~~~~~~l~~-----~~~~~g~~~~a~~~~~~m~~ 285 (295)
|. .|+.+.. +....|..+++...+.++++
T Consensus 270 d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 270 EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 43 3433222 22246778888999998876
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.52 E-value=1.5e-06 Score=61.15 Aligned_cols=95 Identities=8% Similarity=0.020 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hHhHHHHHHHHHccCCHHHHHHHHHHHhhcC---CCC-CCHH
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PD----IFTYNLWISSCAATLNIDQVKKFLDEMSCDS---GGS-DDWV 151 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~ 151 (295)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..... +.+ ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555444331100 00 1234444445555555555555555443310 000 0122
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHH
Q 022531 152 KYVNLVNIYITASHLVNAESSTLVE 176 (295)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (295)
++..+..++...|++++|.+ .+.+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~-~~~~ 114 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAID-YHLK 114 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhhHHHHHH-HHHH
Confidence 34444444455555555555 4433
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.52 E-value=2.5e-07 Score=77.99 Aligned_cols=120 Identities=8% Similarity=-0.051 Sum_probs=96.1
Q ss_pred HHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV 95 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 95 (295)
+...+.+.|++++|.+.|++..+..| +..+|..+..++.+.|++++|++.+++..+.. +.+..+|..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34456678999999999999888777 68899999999999999999999999999875 45688999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHH--HHccCCHHHHHHHHH
Q 022531 96 EKVALVVEEIKRKNVVPDIFTYNLWISS--CAATLNIDQVKKFLD 138 (295)
Q Consensus 96 ~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~ 138 (295)
++|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998875322 34455555555 788899999999988
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.50 E-value=5.6e-06 Score=56.01 Aligned_cols=92 Identities=10% Similarity=-0.045 Sum_probs=54.4
Q ss_pred HHHHHHHhccChhHHHHHHhhcccCCCC-H---HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 022531 16 TRIDLMTKVFGIHSGERYFEGLPLSAKT-S---ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---ALMYNEMMTL 88 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~~p~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~ 88 (295)
.+...+.+.|++++|...|+.+....|+ . ..+..+..++.+.|++++|...|++..+.. +.+ ..++..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 3445555666666666666666554442 2 355566666666666666666666665543 122 4455666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 022531 89 YMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~ 108 (295)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666553
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.49 E-value=2.7e-06 Score=69.14 Aligned_cols=124 Identities=9% Similarity=-0.035 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQS---------------NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN 109 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 109 (295)
..|..+...+.+.|++++|+..|++..+. .-+.+..+|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45777888888889999999988887761 012245678888888888888888888888888753
Q ss_pred CCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 022531 110 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 171 (295)
Q Consensus 110 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (295)
. .+...+..+..++...|++++|+..|+++.+. .+.+..++..+..++.+.++.+++.+
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 25677888888888888888888888888774 24466677777777777777776655
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.48 E-value=1.9e-06 Score=72.20 Aligned_cols=130 Identities=9% Similarity=-0.073 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCC-C---------------HHHHHHHHHHHHccCcHHHHHHHHHHHHhCC
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-T---------------SETYTALLHLYAGAKWTEKAEELFERVKQSN 74 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 74 (295)
...|..+...+.+.|++++|...|+......| + ...|..+..++.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34677888999999999999999999887655 3 5899999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHH-HHHHHhh
Q 022531 75 LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK-FLDEMSC 142 (295)
Q Consensus 75 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~ 142 (295)
+.+...|..+..+|...|++++|+..|++..+... -+...+..+..++.+.++.+++.+ .+..|..
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999998632 245678888888888888887764 4555543
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.48 E-value=7.6e-07 Score=59.52 Aligned_cols=87 Identities=13% Similarity=-0.055 Sum_probs=49.0
Q ss_pred cCchhhHHHHHHHHHHHhc--CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHH
Q 022531 163 ASHLVNAESSTLVEAEKSI--TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 240 (295)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 240 (295)
.|++++|.. .+.+....+ .+.+...+..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~-~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVP-YYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHH-HHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHH-HHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 455666666 555555432 12234555666666666666666666666665543 22345555666666677777777
Q ss_pred HHHHHHHhhhc
Q 022531 241 GEIIDQWKQSA 251 (295)
Q Consensus 241 ~~~~~~~~~~~ 251 (295)
.+.+++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 77776666544
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.47 E-value=2.3e-06 Score=69.54 Aligned_cols=122 Identities=5% Similarity=-0.116 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhccc----------------CCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPL----------------SAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSN 74 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~----------------~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 74 (295)
..+..+...+.+.|++++|...|+.... ..| +..+|..+..++.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3477788899999999999999998876 334 67889999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHH
Q 022531 75 LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 135 (295)
Q Consensus 75 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 135 (295)
+.+...|..+..+|...|++++|++.|++..+... .+...+..+...+...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999988532 256667777777777776666544
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.47 E-value=9.8e-07 Score=62.70 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQS--------N---------LSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 106 (295)
...+......+.+.|++++|+..|++.... . -+.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666677777777777777777766653 0 01234577788888888888888888888877
Q ss_pred hCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 107 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 107 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
+... .+...|..+..++...|++++|...|++....
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 7532 25667777888888888888888888887764
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.46 E-value=2.2e-06 Score=60.82 Aligned_cols=102 Identities=9% Similarity=0.011 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccC------------------CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLS------------------AK-TSETYTALLHLYAGAKWTEKAEELFERVK 71 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------------------~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 71 (295)
...+......+.+.|++++|...|...... .| +...|..+..++.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778889999999999999999987664 23 35689999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 022531 72 QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF 115 (295)
Q Consensus 72 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 115 (295)
+.+ +.+...|..+..+|...|++++|...|++..+. .|+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 875 557889999999999999999999999999885 45543
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.45 E-value=2e-06 Score=72.41 Aligned_cols=124 Identities=13% Similarity=-0.002 Sum_probs=98.0
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc
Q 022531 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 126 (295)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 126 (295)
+..+...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+... .+..++..+..+|.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3444556678899999999999998874 44688999999999999999999999999998643 357789999999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH--HHhcCchhhHHHHHHH
Q 022531 127 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI--YITASHLVNAESSTLV 175 (295)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~ 175 (295)
.|++++|.+.|++..+.. +.+..++..+..+ +.+.|++++|.+ .++
T Consensus 87 ~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~-~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIA-GDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 999999999999988752 3344455555555 888899999999 666
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.35 E-value=3.6e-05 Score=66.15 Aligned_cols=187 Identities=6% Similarity=-0.039 Sum_probs=144.8
Q ss_pred HHHHHHHHHH---Hhc-cChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCc----------HHHHHHHHHHHHhCCCC
Q 022531 12 SDYATRIDLM---TKV-FGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKW----------TEKAEELFERVKQSNLS 76 (295)
Q Consensus 12 ~~~~~li~~~---~~~-~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~ 76 (295)
..|..++..+ .+. ..-++|.+.++.+....| +..+|+.--.++...|+ ++++++.++++.+.. +
T Consensus 26 ~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-p 104 (567)
T 1dce_A 26 KLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-P 104 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-C
Confidence 3455444433 233 346688999999988877 67788887777776666 999999999999875 5
Q ss_pred CCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCCCCHHHH
Q 022531 77 FNALMYNEMMTLYMSVG--QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL-NIDQVKKFLDEMSCDSGGSDDWVKY 153 (295)
Q Consensus 77 p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (295)
-+..+|+.-...+.+.+ +++++++.++++.+.... +..+|+.-.-.+.+.| .++++++.+.++.+. .+-+..+|
T Consensus 105 K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW 181 (567)
T 1dce_A 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSW 181 (567)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHH
T ss_pred CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHH
Confidence 67889999999999999 789999999999997554 7788888888888888 899999999999874 46678888
Q ss_pred HHHHHHHHhc--------------CchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHH
Q 022531 154 VNLVNIYITA--------------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 204 (295)
Q Consensus 154 ~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 204 (295)
+.....+.+. +.++++.+ .+.......+. |...|+-+-..+.+.++.++
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~-~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELE-LVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH-HHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHH-HHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 8877777663 55788888 77777766544 77888887777777666433
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=1.7e-06 Score=69.54 Aligned_cols=98 Identities=6% Similarity=-0.085 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 160 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (295)
.|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++.... .+.+..++..+....
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 677788888888888888888888777532 25677788888888888888888888887753 233445555555542
Q ss_pred -HhcCchhhHHHHHHHHHHHhcC
Q 022531 161 -ITASHLVNAESSTLVEAEKSIT 182 (295)
Q Consensus 161 -~~~~~~~~a~~~~~~~~~~~~~ 182 (295)
...+..+.+.. .+..++...+
T Consensus 309 ~~~~~~~~~a~~-~~~~~l~~~p 330 (338)
T 2if4_A 309 EQEKALYQKQKE-MYKGIFKGKD 330 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHH-HHHHhhCCCC
Confidence 33455666666 7777765543
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.27 E-value=3.4e-06 Score=67.70 Aligned_cols=149 Identities=11% Similarity=-0.018 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 123 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 123 (295)
...+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4456666777777777777777777766542 33221 222333333332221 1367888889
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHH-HHhcCCH
Q 022531 124 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL-YAGLGNK 202 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~ 202 (295)
+.+.|++++|+..+++.... .+.+..++..+..+|...|++++|.. .+.+.....+. +...+..+... ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~-~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARD-DFRKAQKYAPD-DKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHTTC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 35578889999999999999999999 88877654433 45556555554 3345677
Q ss_pred HHHHHHHHHHHhc
Q 022531 203 DKIDQIWKSLRMT 215 (295)
Q Consensus 203 ~~a~~~~~~m~~~ 215 (295)
+++..+|..|...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 8888888888654
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.27 E-value=5.3e-06 Score=69.73 Aligned_cols=98 Identities=3% Similarity=-0.146 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhh-----cCCCCC
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKR-----KN-VVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSC-----DSGGSD 148 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~ 148 (295)
+++.|...|...|++++|+.++++.++ .| -.|+ ..+++.|...|...|++++|..++++... .+...|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 444444444444454444444444332 11 1111 23344444455555555555544444322 011111
Q ss_pred -CHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 022531 149 -DWVKYVNLVNIYITASHLVNAESSTLVEAEK 179 (295)
Q Consensus 149 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (295)
...+.+.+-.++...+.+++|+. ++..+.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~-~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEF-MYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 12233344444455555555555 4444443
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.26 E-value=1.2e-05 Score=56.32 Aligned_cols=97 Identities=6% Similarity=-0.083 Sum_probs=57.4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCCCC------CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLS------FN-----ALMYNEMMTLYMSVGQVEKVALVVEEIKRK-----N 109 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 109 (295)
.+......+.+.|++++|+..|++.++..-. .+ ...|+.+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4444555555555555555555555543200 01 226777777777777777777777766653 1
Q ss_pred CCCC-hHhH----HHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 110 VVPD-IFTY----NLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 110 ~~p~-~~~~----~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
+.|+ ...| .....++...|++++|+..|++..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1443 4456 6677777777777777777777654
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.25 E-value=5.2e-06 Score=55.12 Aligned_cols=78 Identities=9% Similarity=-0.047 Sum_probs=55.3
Q ss_pred HHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 29 SGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 107 (295)
Q Consensus 29 ~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 107 (295)
+|...|+......| +...|..+...+...|++++|...|++..+.+ +.+...|..+..+|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666555 66777777777777777777777777777654 34566777777777777777777777777665
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.6e-06 Score=56.99 Aligned_cols=64 Identities=9% Similarity=0.078 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 44 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
...|..+...+...|++++|...|++..+.. +.+...|..+..++.+.|++++|++.|++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4455566666666666666666666666543 335556666666666666666666666666653
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.19 E-value=3.9e-06 Score=58.57 Aligned_cols=98 Identities=11% Similarity=0.002 Sum_probs=69.3
Q ss_pred HhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 22 TKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWT----------EKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
.+.+.+++|.+.++...+..| +...|+.+..++...+++ ++|+..|++.++.+ +-+..+|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 456778888888888877766 788888888888877664 48888888877765 345677888888887
Q ss_pred hcC-----------CHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 91 SVG-----------QVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 91 ~~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
..| ++++|++.|++..+ +.|+...|...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 664 67777777777766 3555555544443
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.16 E-value=2.4e-05 Score=51.78 Aligned_cols=80 Identities=8% Similarity=-0.023 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 022531 62 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 62 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 141 (295)
.|+..|++..+.. +.+...+..+...|...|++++|+..|++..+... .+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777777764 45678888888888899999999999988887532 246678888888888899999998888876
Q ss_pred hc
Q 022531 142 CD 143 (295)
Q Consensus 142 ~~ 143 (295)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.16 E-value=2.9e-05 Score=65.30 Aligned_cols=125 Identities=9% Similarity=-0.045 Sum_probs=88.0
Q ss_pred HhcCCHHHHHHHHHHHHhC-----C-CCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhc-----CCCCC-CHHHHHHH
Q 022531 90 MSVGQVEKVALVVEEIKRK-----N-VVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD-----SGGSD-DWVKYVNL 156 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~~l 156 (295)
...|++++|+.++++.++. | -.| ...+++.|...|...|++++|..++++...- +...| ...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3567888888888776542 1 122 2456888888999999999999888876541 12233 34568889
Q ss_pred HHHHHhcCchhhHHHHHHHHHHH-----hcC-CCc-cccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 022531 157 VNIYITASHLVNAESSTLVEAEK-----SIT-QRQ-WITYDFLIILYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (295)
...|...|++++|.. ++++... .|+ .|+ ..+.+.+-.++...+.+++|+.+|..+++.
T Consensus 400 a~~~~~~G~~~eA~~-~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 400 GLTNWHAGHIEVGHG-MICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHTTCHHHHHH-HHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 7776653 122 222 234566677788888899999999888764
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.15 E-value=6.8e-05 Score=52.41 Aligned_cols=63 Identities=10% Similarity=-0.067 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhh----cC-CCCCHHHH----HHHHHHHHccCChHHHHHHHHHHHh
Q 022531 223 NYICILSSYLMLGHLKEVGEIIDQWKQS----AT-SDFDISAC----NRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.|..+..++.+.|++++|+..+++..+. +. .+.+...| .....++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5556666666666666666666666653 00 12345566 7777777777777777777777664
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.14 E-value=5.9e-05 Score=51.90 Aligned_cols=110 Identities=12% Similarity=-0.048 Sum_probs=66.1
Q ss_pred cChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 022531 25 FGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS----VGQVEKVAL 100 (295)
Q Consensus 25 ~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~ 100 (295)
+++++|.+.|+...+.+. .... |...|...+.+++|.+.|++..+.| ++..+..|...|.. .+++++|++
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 345666666666655432 1222 5555555566666777776666665 45666666666666 566667777
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHc----cCCHHHHHHHHHHHhhc
Q 022531 101 VVEEIKRKNVVPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 101 ~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 143 (295)
+|++..+.| +...+..|...|.. .+++++|...|++..+.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 766666653 34455555556655 56666666666666554
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=0.00032 Score=60.28 Aligned_cols=172 Identities=10% Similarity=-0.051 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC----------HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-
Q 022531 96 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN----------IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS- 164 (295)
Q Consensus 96 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 164 (295)
++|++.++++...+.. +..+|+.--.++.+.|+ ++++++.++.+... .+-+..+|+.-.-++.+.+
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 4455555555553221 23334444444444444 56666666666653 2445556665555566666
Q ss_pred -chhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcC-CHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhc--------
Q 022531 165 -HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG-NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML-------- 234 (295)
Q Consensus 165 -~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-------- 234 (295)
+++++.+ .++++.+..+. |..+|+.-...+.+.| .++++++.++++.+... -|...|+.....+.+.
T Consensus 123 ~~~~~el~-~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELE-LCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHH-HHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccccc
Confidence 4466666 66666554433 5556665555555566 66666666666655432 2444455444443332
Q ss_pred ------CChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHH
Q 022531 235 ------GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEK 275 (295)
Q Consensus 235 ------~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 275 (295)
+.++++++.+++..... +-|...|..+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCccc
Confidence 45788889998888754 4577888888888887776444
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.08 E-value=3.4e-05 Score=50.41 Aligned_cols=92 Identities=7% Similarity=-0.146 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC------H
Q 022531 77 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD------W 150 (295)
Q Consensus 77 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~ 150 (295)
++...|..+...+...|++++|++.|++..+... .+...+..+..++.+.|++++|+..+++.... .+.+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence 3566788888889999999999999998887532 35677888888899999999999999998864 2223 4
Q ss_pred HHHHHHHHHHHhcCchhhHHH
Q 022531 151 VKYVNLVNIYITASHLVNAES 171 (295)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~ 171 (295)
..+..+..++...|+.+.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHHhHhhhHh
Confidence 455566666666666665554
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.08 E-value=2.9e-05 Score=48.70 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
+...|..+...+...|++++|...|++..+.. +.+..++..+..++.+.|++++|...|++..+... .+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 34566666667777777777777777666553 33566666777777777777777777777666422 23445555555
Q ss_pred HHHc
Q 022531 123 SCAA 126 (295)
Q Consensus 123 ~~~~ 126 (295)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.01 E-value=8.8e-05 Score=46.41 Aligned_cols=82 Identities=9% Similarity=0.003 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 022531 79 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 158 (295)
Q Consensus 79 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (295)
...+..+...+...|++++|+..|++..+... .+...+..+..++.+.|++++|...|++.... .+.+..++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 45566666777777777777777777665422 24556666677777777777777777776654 2344555556655
Q ss_pred HHHhc
Q 022531 159 IYITA 163 (295)
Q Consensus 159 ~~~~~ 163 (295)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.00 E-value=3.3e-05 Score=49.81 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 106 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 106 (295)
+...|..+...+...|++++|+..|++..+.+ +.+..+|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555555555443 2234455555555555555555555555544
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.94 E-value=0.00043 Score=47.48 Aligned_cols=110 Identities=11% Similarity=-0.032 Sum_probs=59.5
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHc----cCCHHHH
Q 022531 58 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA----TLNIDQV 133 (295)
Q Consensus 58 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a 133 (295)
+++++|.+.|++..+.| .|+.. |...|...+..++|+++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666665 22222 5555555555666666666665542 34455555555555 5566666
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCchhhHHHHHHHHHHHh
Q 022531 134 KKFLDEMSCDSGGSDDWVKYVNLVNIYIT----ASHLVNAESSTLVEAEKS 180 (295)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 180 (295)
...|++..+. | +...+..+..+|.. .++.++|.+ ++.+..+.
T Consensus 81 ~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~-~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVK-TFEKACRL 126 (138)
T ss_dssp HHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHH-HHHHHHHC
Confidence 6666665553 2 34445555555555 555555555 55554443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.87 E-value=8.7e-05 Score=47.78 Aligned_cols=60 Identities=15% Similarity=-0.005 Sum_probs=27.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 188 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 188 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
.+..+...|...|++++|++.|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444445555555555555444432 1123334444455555555555555554443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.83 E-value=8.2e-05 Score=51.92 Aligned_cols=99 Identities=13% Similarity=0.063 Sum_probs=75.1
Q ss_pred HccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 022531 55 AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV----------EKVALVVEEIKRKNVVPDIFTYNLWISSC 124 (295)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 124 (295)
.+.+.+++|...+++..+.. +.+...|+.+..++...+++ ++|+..|++..+.... +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 35567889999999988875 56788999888888888765 5899999888885332 466788888888
Q ss_pred HccC-----------CHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 022531 125 AATL-----------NIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 158 (295)
Q Consensus 125 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (295)
...| ++++|++.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 7764 788999999888875 466555554444
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.69 E-value=0.0014 Score=52.48 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHH--cc---CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC--CHHHH---HHHHHHHHh-C
Q 022531 43 TSETYTALLHLYA--GA---KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS---VG--QVEKV---ALVVEEIKR-K 108 (295)
Q Consensus 43 ~~~~~~~li~~~~--~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~~--~~~~a---~~~~~~m~~-~ 108 (295)
+...|...+++.. .. .+..+|..+|++..+.+ |-....|-.+..+|.. .+ ..... ...++.... .
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 5566666555432 22 23567888888877764 2223444433333321 11 11111 112222111 1
Q ss_pred CCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCC
Q 022531 109 NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 183 (295)
Q Consensus 109 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (295)
..+.+..+|..+...+...|++++|...++++... + |+...|..+...+.-.|++++|.+ .+.+.....+.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e-~~~~AlrL~P~ 342 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAAD-AYLTAFNLRPG 342 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSCS
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCC
Confidence 12445667777666666678888888888888876 3 677777777788888888888888 77777666543
No 210
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.57 E-value=0.0068 Score=40.54 Aligned_cols=148 Identities=11% Similarity=0.010 Sum_probs=80.8
Q ss_pred HHHHHHH--HHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHH
Q 022531 117 YNLWISS--CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLII 194 (295)
Q Consensus 117 ~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 194 (295)
...|+.+ ..-.|..+++.++..+.... .+..-||.+|.-....-+-+-..+ +++.+ |...|.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~-vLd~I---GkiFDi-------- 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQ-VLDKI---GSYFDL-------- 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHH-HHHHH---GGGSCG--------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHH-HHHHH---hhhcCc--------
Confidence 3344444 34456777777777776654 233444444444444444443333 33322 222232
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChH
Q 022531 195 LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTE 274 (295)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 274 (295)
...|+...+...+-.+ ..+...+...+..+...|+-|.-.+++..+.... +|+....-.+..+|.+.|+..
T Consensus 72 --s~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~--~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 72 --DKCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDER 142 (172)
T ss_dssp --GGCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHH
T ss_pred --HhhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccC--CCChHHHHHHHHHHHHhcchh
Confidence 2334444444444332 2344455666667777777777777776654432 456666666777777777777
Q ss_pred HHHHHHHHHHhcCCC
Q 022531 275 KANEFHMLLLQKNCA 289 (295)
Q Consensus 275 ~a~~~~~~m~~~g~~ 289 (295)
+|.+++.++-++|++
T Consensus 143 ~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 143 DATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhH
Confidence 777777777776653
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.54 E-value=0.00057 Score=56.55 Aligned_cols=92 Identities=12% Similarity=-0.079 Sum_probs=64.3
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCC-hHh
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSN---LSF----NALMYNEMMTLYMSVGQVEKVALVVEEIKR-----KN-VVPD-IFT 116 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~p~-~~~ 116 (295)
+..+.+.|++++|+.++++..+.. +.| ...+++.|...|...|++++|+.++++... .| ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334456788888888888776431 222 245778888888888888888888887653 22 2233 455
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 117 YNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78888888888888888888877544
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.54 E-value=0.00022 Score=58.98 Aligned_cols=62 Identities=11% Similarity=-0.056 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 022531 80 LMYNEMMTLYMSVGQVEKVALVVEEIKR-----KN-VVPD-IFTYNLWISSCAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 80 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 141 (295)
.+++.|...|...|++++|+.++++..+ .| -.|+ ..+++.|...|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4556666666666666666666665442 12 1222 2346666666666666666666666543
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.49 E-value=0.00045 Score=43.98 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSR-NYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 192 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
....+...|++++|++.+++..+.. +.+.. .+..+..+|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445667788888888887776653 22345 66677777788888888888888877754
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.46 E-value=0.011 Score=53.05 Aligned_cols=155 Identities=10% Similarity=0.102 Sum_probs=101.2
Q ss_pred HHHHHhccChhHHHH-HHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 022531 18 IDLMTKVFGIHSGER-YFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 96 (295)
Q Consensus 18 i~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 96 (295)
.......+++++|.+ ++..++ +......++..+.+.|..++|+++.++- . .-.......|+++
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~----~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE----GKDSLTKIARFLEGQEYYEEALNISPDQ--------D----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC----CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------H----HHHHHHHHHTCHH
T ss_pred HhHHHHhCCHHHHHHHHHhcCC----chHHHHHHHHHHHhCCChHHheecCCCc--------c----hheehhhhcCCHH
Confidence 344556899999988 765543 1233477888888999999998776321 1 1133456789999
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 022531 97 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 176 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (295)
+|+++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...|...|+.+...+ +.+.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~-~~~~ 732 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVT-LAKD 732 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHH-HHHH
Confidence 999986543 4678899999999999999999999998765 2345555666676666555 3332
Q ss_pred HHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHH
Q 022531 177 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS 211 (295)
Q Consensus 177 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 211 (295)
....+ -++.-..+|.+.|++++|++++.+
T Consensus 733 a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 733 AETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 22222 122333344455666665555543
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.44 E-value=0.0044 Score=49.59 Aligned_cols=64 Identities=19% Similarity=0.081 Sum_probs=39.9
Q ss_pred ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 185 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 185 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44555555555555667777777776666653 55555556666666677777777777666653
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.43 E-value=0.0013 Score=54.39 Aligned_cols=88 Identities=5% Similarity=-0.042 Sum_probs=66.0
Q ss_pred hcCCHHHHHHHHHHHHhc---cCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHhhh-----cCCCCCH-HHHHHHH
Q 022531 198 GLGNKDKIDQIWKSLRMT---KQKMT----SRNYICILSSYLMLGHLKEVGEIIDQWKQS-----ATSDFDI-SACNRLL 264 (295)
Q Consensus 198 ~~g~~~~a~~~~~~m~~~---~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~l~ 264 (295)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++..+- |...|++ .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999998876542 22333 255788999999999999999999887542 3334443 4688999
Q ss_pred HHHHccCChHHHHHHHHHHHh
Q 022531 265 GAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~m~~ 285 (295)
..|...|++++|..++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.42 E-value=0.00021 Score=45.57 Aligned_cols=57 Identities=16% Similarity=0.084 Sum_probs=33.0
Q ss_pred HHHHHccCcHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 51 LHLYAGAKWTEKAEELFERVKQSNLSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
...+.+.|++++|...|++..+.. +.+.. .|..+..+|...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555566666666666665543 23445 5666666666666666666666666554
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.37 E-value=0.0011 Score=54.89 Aligned_cols=89 Identities=11% Similarity=0.069 Sum_probs=68.0
Q ss_pred HhcCCHHHHHHHHHHHHhCC---CCC----ChHhHHHHHHHHHccCCHHHHHHHHHHHhhc-----CCCCC-CHHHHHHH
Q 022531 90 MSVGQVEKVALVVEEIKRKN---VVP----DIFTYNLWISSCAATLNIDQVKKFLDEMSCD-----SGGSD-DWVKYVNL 156 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~~l 156 (295)
.+.|++++|+.++++..+.. ..| ...+++.+...|...|++++|+.+++++..- +...| ...+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 35678999999999887531 122 2467888999999999999999999876541 22233 34568899
Q ss_pred HHHHHhcCchhhHHHHHHHHHHH
Q 022531 157 VNIYITASHLVNAESSTLVEAEK 179 (295)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~ 179 (295)
...|...|++++|.. ++.+..+
T Consensus 378 a~~~~~~g~~~eA~~-~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMK-NLRLAFD 399 (429)
T ss_dssp HHHHHHTTCHHHHHH-HHHHHHH
T ss_pred HHHHHhcCCHHHHHH-HHHHHHH
Confidence 999999999999999 8777664
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.20 E-value=0.0051 Score=42.43 Aligned_cols=82 Identities=9% Similarity=-0.082 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcC---CHHHHHHHHHHHHhccCCC--CHHhHHHHHHHHHhcCChHHH
Q 022531 166 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG---NKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLMLGHLKEV 240 (295)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~A 240 (295)
...+.+ .+......+. ++..+...+..++++.+ +.++++.+++.+.+.. .| +...+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~-~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEK-KFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHH-HHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHH-HHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 444555 4444444333 45566666666777766 5567888887777654 24 223333466667788888888
Q ss_pred HHHHHHHhhh
Q 022531 241 GEIIDQWKQS 250 (295)
Q Consensus 241 ~~~~~~~~~~ 250 (295)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888887774
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.19 E-value=0.014 Score=52.36 Aligned_cols=154 Identities=12% Similarity=0.135 Sum_probs=100.2
Q ss_pred HHHccCcHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHH
Q 022531 53 LYAGAKWTEKAEE-LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 131 (295)
Q Consensus 53 ~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 131 (295)
.....+++++|.+ ++.. + |+......++..+.+.|.+++|.++.++ |. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHH
Confidence 3345789999877 5522 1 1122337788888899999999876632 11 1133456789999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHH
Q 022531 132 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS 211 (295)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 211 (295)
.|.++.+. ..+...|..+...+.+.++++.|.+ .|..+.+ |..+...|...|+.+...++-+.
T Consensus 670 ~A~~~~~~-------~~~~~~W~~la~~al~~~~~~~A~~-~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 670 LARDLLTD-------ESAEMKWRALGDASLQRFNFKLAIE-AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHTT-------CCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHh-------hCcHhHHHHHHHHHHHcCCHHHHHH-HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 99988533 2466889999999999999999999 7775422 34455555667777766666665
Q ss_pred HHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 022531 212 LRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQW 247 (295)
Q Consensus 212 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 247 (295)
....|. ++....+|.+.|++++|.+++.++
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 555441 233444455566666666665543
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.17 E-value=0.0036 Score=39.49 Aligned_cols=65 Identities=11% Similarity=-0.028 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHccCc---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 43 TSETYTALLHLYAGAKW---TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
|...+..+..++...++ .++|..+|++..+.+ +-++.+...+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55556666555543333 466666666666554 334556666666666666666666666666654
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.018 Score=40.75 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=68.8
Q ss_pred HHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 96 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 96 (295)
-.+.....|+++.|.++.+.+ .+...|..|.......|+++-|.++|.+... +..+.-.|.-.|+.+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 345566778888888877655 3567788888888888888888888876654 334555566667766
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 022531 97 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 141 (295)
+..++-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 6655544444432 24555555666777777777775533
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.00 E-value=0.02 Score=44.05 Aligned_cols=82 Identities=17% Similarity=0.134 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHcc-CCH
Q 022531 60 TEKAEELFERVKQSNLSFN---ALMYNEMMTLYMSV-----GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT-LNI 130 (295)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~ 130 (295)
...|...+++..+.+ |+ ...|..|...|.+. |+.++|.+.|++..+.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 344555555555543 33 34555555555553 56666666666655532211244455555555553 556
Q ss_pred HHHHHHHHHHhhc
Q 022531 131 DQVKKFLDEMSCD 143 (295)
Q Consensus 131 ~~a~~~~~~~~~~ 143 (295)
+++...+++....
T Consensus 257 ~~a~~~L~kAL~a 269 (301)
T 3u64_A 257 AGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 6666666665553
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.99 E-value=0.018 Score=36.22 Aligned_cols=67 Identities=9% Similarity=0.045 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 76 SFNALMYNEMMTLYMSVGQ---VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 76 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
+.|+..+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|+..|+++...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567777777777765544 68888888888875332 4666777777888888888888888888875
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.97 E-value=0.0081 Score=38.67 Aligned_cols=67 Identities=4% Similarity=-0.217 Sum_probs=51.5
Q ss_pred ccccHHHHHHHHHhcCCHHHHHHHHHHHHhcc------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 185 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTK------QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 185 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
+..-+..|...+...|++..|...|+...+.- -.+....+..+..++.+.|+++.|..++++..+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34456677888889999999999998876531 12345667788899999999999999999988743
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.96 E-value=0.013 Score=40.37 Aligned_cols=83 Identities=13% Similarity=0.015 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--ChHhHHHHHHHHHccCCHHHH
Q 022531 59 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG---QVEKVALVVEEIKRKNVVP--DIFTYNLWISSCAATLNIDQV 133 (295)
Q Consensus 59 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a 133 (295)
.+..+.+-|.+..+.| +++..+.-.+..++++++ +.++++.+|++..+.+ .| +...+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 4455666666666655 367777777777888777 5567888888777753 23 234455566667888888888
Q ss_pred HHHHHHHhhc
Q 022531 134 KKFLDEMSCD 143 (295)
Q Consensus 134 ~~~~~~~~~~ 143 (295)
.++++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888887764
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.65 E-value=0.028 Score=36.08 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCChHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKN------VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
-+..|...+.+.|+++.|...|++..+.- -.+....+..+..++.+.|+++.|..+++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33344444444455555554444433210 012233444444455555555555555554443
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.46 E-value=8.5e-07 Score=72.40 Aligned_cols=244 Identities=8% Similarity=0.057 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
+..|..|..+..+.+++.+|++-|-+. .|+..|..+|.+..+.|.+++-...+....+.. .++.+=+.|+.+|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence 334555666666666666666554322 345566667777777777777766665544432 23445556777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc-------------------CCCCCCHH
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD-------------------SGGSDDWV 151 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~~ 151 (295)
+.++..+..+.+ . .||..-...+.+-|...|.++.|.-+|..+... .....++.
T Consensus 128 k~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 777654433322 1 245545555666666666666555554433211 01134455
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHH
Q 022531 152 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY 231 (295)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 231 (295)
||..+-.+|...+.+.-|.- .--.+ .+.++ -...++..|-..|.+++.+.+++.-.... +.....|+-|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqi-cGLni---Ivhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQM-CGLHI---VVHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTH-HHHHH---HCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHH-hcchh---cccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 66666666666666665544 11111 11111 11234455667777777777777554322 44556788888888
Q ss_pred HhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 022531 232 LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 282 (295)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (295)
++- +.++..+.++..-. +.|+ -.+|++|-+..-|.++.-++..
T Consensus 274 sKY-~PeKlmEHlklf~s----riNi---pKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWS----RVNI---PKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HSS-CTTHHHHHHTTSSS----SSCC---TTTHHHHTTTTCHHHHHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHH----hccH---HHHHHHHHHHhhHHHHHHHHhc
Confidence 766 44444444443222 2232 2368889988888888877664
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.35 E-value=0.021 Score=44.00 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=75.6
Q ss_pred hhHHHHHHhhcccCCCC---HHHHHHHHHHHHcc-----CcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc-CCH
Q 022531 27 IHSGERYFEGLPLSAKT---SETYTALLHLYAGA-----KWTEKAEELFERVKQSNLSF--NALMYNEMMTLYMSV-GQV 95 (295)
Q Consensus 27 ~~~A~~~~~~~~~~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~-~~~ 95 (295)
...|...+++..+..|+ ...|..|...|.+. |+.++|.+.|++.++.+ | +..++......+++. |+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHhcCCH
Confidence 56777788888777775 67899999999994 99999999999999875 5 478888889999885 999
Q ss_pred HHHHHHHHHHHhCCCC--CChHhHHHH
Q 022531 96 EKVALVVEEIKRKNVV--PDIFTYNLW 120 (295)
Q Consensus 96 ~~a~~~~~~m~~~~~~--p~~~~~~~l 120 (295)
+++.+.+++....... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999998766 665444443
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.28 E-value=0.036 Score=36.78 Aligned_cols=92 Identities=10% Similarity=-0.002 Sum_probs=49.7
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHH---HHHHHHHHHhccCCC-CHHh-HHHHHHHH
Q 022531 157 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK---IDQIWKSLRMTKQKM-TSRN-YICILSSY 231 (295)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~-~~~~-~~~li~~~ 231 (295)
+........+..+.+ .+......+. ++..+--.+..++.+..+... ++.+++.+...+ .| ...- .-.|.-++
T Consensus 8 l~~~~~~~~l~~~~~-~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 8 LNELVSVEDLLKFEK-KFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHH-HHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 333333444445555 4444433333 444455555556666665544 666777666543 23 2222 22455667
Q ss_pred HhcCChHHHHHHHHHHhhhc
Q 022531 232 LMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~ 251 (295)
.+.|++++|.+.++.+.+..
T Consensus 85 yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHhC
Confidence 77777777777777777643
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.19 E-value=0.15 Score=34.22 Aligned_cols=120 Identities=13% Similarity=0.044 Sum_probs=60.7
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C----------------CCCChHhHHH
Q 022531 57 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK-N----------------VVPDIFTYNL 119 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~----------------~~p~~~~~~~ 119 (295)
.|.+++..++..+..... +..-||-+|-.....-+-+-..++++..-+- . ...+......
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ 96 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 96 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence 455555555555554432 3444555554444444444444444443221 0 0113344455
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcC
Q 022531 120 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 182 (295)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (295)
.++.....|+-++-.+++..+.. +.+|++.....+..+|.+.|+..+|.+ ++.+.-+.|.
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~e-Ll~~AC~kG~ 156 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATT-LLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTC
T ss_pred HHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHH-HHHHHHHhhh
Confidence 55555666666666666666433 335556666666666666666666666 5555544443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.14 E-value=0.18 Score=34.55 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 200 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 200 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
++.++|.++|+.+.+.+-+. ...|....+--.+.|+++.|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 66777777777775553333 5555555555567777777777777766643
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.13 E-value=0.085 Score=35.01 Aligned_cols=86 Identities=12% Similarity=-0.007 Sum_probs=57.1
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--ChHhHHHHHHHHHccCCH
Q 022531 56 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK---VALVVEEIKRKNVVP--DIFTYNLWISSCAATLNI 130 (295)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~ 130 (295)
....+..+.+-|.+....| .|+..+--.+..+++++.+... ++.+++++.+.+ .| .-.....|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 3444555666666655545 3677777777778887776555 788888877753 13 233344456677888888
Q ss_pred HHHHHHHHHHhhc
Q 022531 131 DQVKKFLDEMSCD 143 (295)
Q Consensus 131 ~~a~~~~~~~~~~ 143 (295)
++|..+++.+.+.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.85 E-value=0.99 Score=41.00 Aligned_cols=253 Identities=11% Similarity=0.033 Sum_probs=131.8
Q ss_pred HHhccChhHHHHHHhhcccCC----CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHH
Q 022531 21 MTKVFGIHSGERYFEGLPLSA----KTSETYTALLHLYAGAKWTEKAEELFERVKQSNL-------SFNALMYNEMMTLY 89 (295)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~li~~~ 89 (295)
....|+.++++.+++...... +....-..+.-+.+.+|..+++..++.......- .+....--++.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677888888887766421 2223333344455556655567777776554320 01111222333333
Q ss_pred HhcCC-HHHHHHHHHHHHhCCCCCChHhHH--HHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH--HHHhcC
Q 022531 90 MSVGQ-VEKVALVVEEIKRKNVVPDIFTYN--LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN--IYITAS 164 (295)
Q Consensus 90 ~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~ 164 (295)
+-.|. -+++...+..+....- +...... .+...+...|+.+....++..+... .+..+...+.. ++...|
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~----~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET----QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc----CcHHHHHHHHHHHHhhhCC
Confidence 33332 2455555655554311 1111122 2233345667777777777776653 12233333333 444678
Q ss_pred chhhHHHHHHHHHHHhcCCCccccHH---HHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHH
Q 022531 165 HLVNAESSTLVEAEKSITQRQWITYD---FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG 241 (295)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 241 (295)
+.+.+.. +.+.+... ..|.. -|. ++..+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.
T Consensus 539 ~~e~~~~-li~~L~~~-~dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 539 RQELADD-LITKMLAS-DESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp CGGGGHH-HHHHHHHC-SCHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred ChHHHHH-HHHHHHhC-CCHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 8888877 66655442 22222 232 34456777888887777888877642 222222222333444566666677
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHH
Q 022531 242 EIIDQWKQSATSDFDISACNRLLGAFSDVGLT-EKANEFHMLLL 284 (295)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 284 (295)
++++.+.+.+ .|.+..-..+.-+....|.. .++.+.+..+.
T Consensus 615 rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 615 RIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 7776665543 45665555555555555554 46666777665
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.76 Score=38.12 Aligned_cols=92 Identities=9% Similarity=0.035 Sum_probs=40.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCH-----HhHHHHHHHHHhcCChHHHHHHHHHHhhh---cCCCCC--HHHHH
Q 022531 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTS-----RNYICILSSYLMLGHLKEVGEIIDQWKQS---ATSDFD--ISACN 261 (295)
Q Consensus 192 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~--~~~~~ 261 (295)
|...|...|++.+|.+++..+...-..... ..+...++.|...+++..|..++...... ....|+ ...+.
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 444455555555555555554321111111 22334455555555665555555554211 111111 12334
Q ss_pred HHHHHHHccCChHHHHHHHHHH
Q 022531 262 RLLGAFSDVGLTEKANEFHMLL 283 (295)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~~~m 283 (295)
..+..+...+++.+|...|.++
T Consensus 223 ~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 223 LLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 4444455555555555555444
No 236
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.23 E-value=2.1 Score=40.32 Aligned_cols=145 Identities=10% Similarity=-0.028 Sum_probs=79.4
Q ss_pred HHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC-----------------
Q 022531 15 ATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF----------------- 77 (295)
Q Consensus 15 ~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----------------- 77 (295)
..++..+.+.+..+-|.++....+. +...-..+..++...|++++|.++|++.-. |+..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 3466667777888888777665543 444446677888889999999999976531 1111
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C-CCh--HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022531 78 ------NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV-V-PDI--FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGS 147 (295)
Q Consensus 78 ------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~-p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 147 (295)
-..-|..++..+.+.+.++.+.+.-+...+... . ++. ..|..+++++...|++++|...+-.+... ..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PL- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SS-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HH-
Confidence 011244455555555666655555444433211 1 111 13555666666666666666666555543 11
Q ss_pred CCHHHHHHHHHHHHhcCch
Q 022531 148 DDWVKYVNLVNIYITASHL 166 (295)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~ 166 (295)
-......++...+..|..
T Consensus 970 -r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCH
T ss_pred -HHHHHHHHHHHHHhCCCh
Confidence 223334444444444433
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.15 E-value=0.07 Score=43.45 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCChHhHHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR-----KNVVPDIFTYNL 119 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 119 (295)
.+...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|++..+ .|+.|+..+-..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 355667788888999999999998888764 56788999999999999999999999988654 589998776543
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.57 Score=33.13 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 141 (295)
+.|+++.|.++.+++ .+...|..|.....+.|+++-|...|.+..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 445555555554443 134445555555555555555555554443
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.00 E-value=0.0003 Score=57.85 Aligned_cols=216 Identities=13% Similarity=0.100 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
|+..|..+|+...+.|.+++-..++...++...+..+=+.|+-+|++.++..+..+++. .|+..-...+..-|
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRC 154 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHH
Confidence 56778999999999999999999999988876677777899999999999765444432 35666666777777
Q ss_pred HhcCCHHHHHHHHHHHHhC-------------------C-CCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC
Q 022531 90 MSVGQVEKVALVVEEIKRK-------------------N-VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD 149 (295)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~-------------------~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 149 (295)
...|.++.|.-+|..+..- . -.-++.||..+-.+|...+.+.-|.-.--.+.-....-+
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~- 233 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE- 233 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCS-
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHH-
Confidence 7788777776666543211 0 123678999999999999999887766555544322222
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHH
Q 022531 150 WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILS 229 (295)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 229 (295)
.++..|...|.+++-.. +++.-. .......-.|+.|.-.|++- ++++..+.++.. .-+.|.. .+|+
T Consensus 234 -----elv~~YE~~G~f~ELIs-LlEagl-glErAHmGmFTELaILYsKY-~PeKlmEHlklf---~sriNip---Kvir 299 (624)
T 3lvg_A 234 -----ELINYYQDRGYFEELIT-MLEAAL-GLERAHMGMFTELAILYSKF-KPQKMREHLELF---WSRVNIP---KVLR 299 (624)
T ss_dssp -----GGGSSSSTTCCCTTSTT-THHHHT-TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTS---SSSSCCT---TTHH
T ss_pred -----HHHHHHHhCCCHHHHHH-HHHHHh-CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHH---HHhccHH---HHHH
Confidence 46688999999999988 665443 23344567788888888876 455555554432 1133322 3788
Q ss_pred HHHhcCChHHHHHHHHHH
Q 022531 230 SYLMLGHLKEVGEIIDQW 247 (295)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~ 247 (295)
+|.+..-|.++.-++...
T Consensus 300 acE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 300 AAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp HHTTTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHhcc
Confidence 888888888877766543
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.99 E-value=0.13 Score=41.81 Aligned_cols=128 Identities=8% Similarity=-0.062 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHH---hccChhHHHHHHhhcccC--CC---CHHHHHHHHHHHHccCcH-HHHHHHHHHHHhCCCCCC
Q 022531 8 VLSDSDYATRIDLMT---KVFGIHSGERYFEGLPLS--AK---TSETYTALLHLYAGAKWT-EKAEELFERVKQSNLSFN 78 (295)
Q Consensus 8 ~~~~~~~~~li~~~~---~~~~~~~A~~~~~~~~~~--~p---~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~ 78 (295)
..|...|..++.... ..|+.+.|...++..... +| +.. ...| .....-++++.
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~------- 170 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK------- 170 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH-------
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH-------
Confidence 345555666555433 347788888777776554 22 211 0111 11112222221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhh----cCCCCCCHHHHH
Q 022531 79 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC----DSGGSDDWVKYV 154 (295)
Q Consensus 79 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ 154 (295)
..+...++..+...|++++|+..+..+.... +-+...+..+|.++.+.|+..+|++.|+.... +-|+.|+..+-.
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 2345567888899999999999999988753 34778999999999999999999999988644 238899887644
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.98 E-value=1.1 Score=42.06 Aligned_cols=191 Identities=11% Similarity=-0.006 Sum_probs=110.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCC------------------
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGG------------------ 146 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 146 (295)
++..+...+..+-+.++..-. +.+...-..+..++...|++++|..+|++.-..-+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455555555554433221 223344455667788899999999999775321000
Q ss_pred ---CCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCcc----ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 022531 147 ---SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW----ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 219 (295)
Q Consensus 147 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 219 (295)
..-..-|..++..+.+.+.++.+.+ +-....+.....+. ..|..+..++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~-fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALE-FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHH-HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 0011236778888889999999988 55555443322221 25778888899999999999888777655432
Q ss_pred CHHhHHHHHHHHHhcCChH------------HHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHccCChHHHHHH-HHHH
Q 022531 220 TSRNYICILSSYLMLGHLK------------EVGEIIDQWKQSA-TSDFDISACNRLLGAFSDVGLTEKANEF-HMLL 283 (295)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~------------~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m 283 (295)
...+..|+...|..|..+ +..+++..-.+.. .......-|..|-.-+...|++..|..+ |+.+
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 345666777666666543 3333333222111 1111123355555556677887777655 4443
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.67 E-value=0.66 Score=31.80 Aligned_cols=102 Identities=7% Similarity=-0.098 Sum_probs=56.3
Q ss_pred hHhHHHHHHHHHccCCH------HHHHHHHHHHhhcCCCCCCHH----HHHHHHH---HHHhcCchhhHHHHHHHHHHHh
Q 022531 114 IFTYNLWISSCAATLNI------DQVKKFLDEMSCDSGGSDDWV----KYVNLVN---IYITASHLVNAESSTLVEAEKS 180 (295)
Q Consensus 114 ~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~----~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~ 180 (295)
..+|-..+...-+.|++ ++..++|++... .++|+.. -|--+.- .+...++.++|.+ +|..+.+.
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~-vy~~a~~~ 89 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARD-YFQMARAN 89 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHH
Confidence 33444444444444555 555666666655 2444321 1111111 1123467788888 77777665
Q ss_pred cCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 022531 181 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 219 (295)
Q Consensus 181 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 219 (295)
.+.-...|....+.-.+.|++.+|.+++......+.+|
T Consensus 90 -hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 -CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 22224555555555667888888888888777765443
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.38 Score=42.61 Aligned_cols=53 Identities=13% Similarity=-0.107 Sum_probs=40.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 022531 229 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 283 (295)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 283 (295)
.-|...|+++.|+++-++..... +.+..+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33556788888888888877743 456778888888888888888888887776
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.3 Score=43.26 Aligned_cols=125 Identities=10% Similarity=0.112 Sum_probs=81.6
Q ss_pred HHHHHHHHhccC-hhHHHHHHhhcccCCCCHHHH--HHHHHHHHccC-cHHHHHHHHHHHHhC------CCCC-CHHH--
Q 022531 15 ATRIDLMTKVFG-IHSGERYFEGLPLSAKTSETY--TALLHLYAGAK-WTEKAEELFERVKQS------NLSF-NALM-- 81 (295)
Q Consensus 15 ~~li~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~--~~li~~~~~~~-~~~~a~~~~~~m~~~------~~~p-~~~~-- 81 (295)
..|+..+...++ ++.|..+|+.+....|...++ .+++..+...+ +--+|.+++.+..+. ..++ +...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445666666666 588999999998887854433 23333333332 233455555544321 1111 1111
Q ss_pred -H---HHHH----HHHHhcCCHHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 022531 82 -Y---NEMM----TLYMSVGQVEKVALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 82 -~---~~li----~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 141 (295)
. ..|+ ..+...|+++-|+++-++.... .| +-.+|..|..+|...|+++.|+-.+..+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 1133 2356789999999999998885 44 47889999999999999999999998874
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.97 E-value=3.6 Score=37.51 Aligned_cols=226 Identities=8% Similarity=-0.046 Sum_probs=122.6
Q ss_pred HHHHHHhccChhHHHHHHhhcccC-C--------CCHHHHHHHHHHH--HccCcHHHHHHHHHHHHhCCCCCCHHHHH--
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLS-A--------KTSETYTALLHLY--AGAKWTEKAEELFERVKQSNLSFNALMYN-- 83 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~-~--------p~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-- 83 (295)
+.-+....|.-+++..++...... . +....-.++.-++ .-.++ +++.+.+..+....- +.....-
T Consensus 417 laLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~-~~~~~~Aal 494 (963)
T 4ady_A 417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAAL 494 (963)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHH
Confidence 333445566666677766654432 1 1111222333333 33444 466666666665431 1111122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHH--HHHHHHHH
Q 022531 84 EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY--VNLVNIYI 161 (295)
Q Consensus 84 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~ 161 (295)
+|...+.-.|+-+....++..+.+.. .-+..-+..+.-++...|+.+.+..+.+.+... ..|...-- .++..+|+
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAya 571 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhc
Confidence 33444557788888888888776641 112222333333455778999998888888763 12322221 24455677
Q ss_pred hcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCCh-HHH
Q 022531 162 TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL-KEV 240 (295)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~A 240 (295)
..|+.....+ ++..+... ...++.....+.-+....|+.+.+.++++.+.+.+ .|..+.-..+.-+....|.. .+|
T Consensus 572 GTGn~~aIq~-LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 572 GTGNNSAVKR-LLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TSCCHHHHHH-HHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred CCCCHHHHHH-HHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 8888877777 66666543 22233333333345555777777888887666654 45544444444455545443 567
Q ss_pred HHHHHHHhhh
Q 022531 241 GEIIDQWKQS 250 (295)
Q Consensus 241 ~~~~~~~~~~ 250 (295)
..++..+..+
T Consensus 649 id~L~~L~~D 658 (963)
T 4ady_A 649 IDVLDPLTKD 658 (963)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHccC
Confidence 7788887653
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.83 E-value=0.73 Score=29.04 Aligned_cols=49 Identities=8% Similarity=0.137 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 95 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.-+..+-++.+....+.|++....+.+++|-+.+++..|..+|+.++.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3345555555555566666666666666666666666666666666554
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.71 E-value=0.77 Score=28.94 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=51.5
Q ss_pred HHHccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 53 LYAGAK-WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 53 ~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
.+.+.. +.=+..+-++.+...++.|++.+..+.+++|.+.+++..|+++|+-.+.+ ..+...+|..+++
T Consensus 18 ~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 18 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 333444 55567778888888888999999999999999999999999999887764 2233455776654
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.23 E-value=0.77 Score=32.01 Aligned_cols=57 Identities=5% Similarity=-0.212 Sum_probs=29.4
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhc-CCCcc-------ccHHHHHHHHHhcCCHHHHHHHHHHH
Q 022531 155 NLVNIYITASHLVNAESSTLVEAEKSI-TQRQW-------ITYDFLIILYAGLGNKDKIDQIWKSL 212 (295)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m 212 (295)
.-+..+...|.++.|+- +...+.... .+|+. .++..+.+++...|++.+|...|++.
T Consensus 25 dqik~L~d~~LY~sA~~-La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRL-LSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHH-HHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33455556666666666 444433321 22221 13344555666666666666666664
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.59 E-value=1.5 Score=33.36 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=37.8
Q ss_pred HHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 53 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
...+.|+++++++....-++.. |-|...-..|+..+|-.|+|+.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456677777777777666654 456666677777777777777777777766653
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.34 E-value=1.7 Score=29.10 Aligned_cols=63 Identities=10% Similarity=0.165 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 022531 94 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 158 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (295)
|.-+..+-++.+....+.|++......+++|-+.+|+..|..+|+.++.+.+ +...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3445566666677777778888888888888888888888888887776533 33445665554
No 251
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=92.28 E-value=1.5 Score=33.22 Aligned_cols=252 Identities=12% Similarity=0.024 Sum_probs=124.3
Q ss_pred HHHHHHHHhccChhHHHHHHhhcccCC-C-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH
Q 022531 15 ATRIDLMTKVFGIHSGERYFEGLPLSA-K-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL--MYNEMMTLYM 90 (295)
Q Consensus 15 ~~li~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~ 90 (295)
...+...++.|+++....+++.-.... . +..-+ +.+...+..|+.+-+..+ .+.|..|+.. .-.+.+...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELL----LRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCCCHHHHHH
Confidence 345667788999998888887543321 1 22222 334444566776544444 4445443321 1112334445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCh---HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHH------------HHHH
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDI---FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV------------KYVN 155 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~~~ 155 (295)
..|+.+ +++.+.+.|..++. .-++. +...+..|+.+-...+++. |..++.. .-..
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~-----g~~~~~~~~~~~~~~~~~~~g~t 150 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALKFLYKR-----GANVNLRRKTKEDQERLRKGGAT 150 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHHHHHT-----TCCTTCCCCCCHHHHHTTCCCCC
T ss_pred HcCCHH----HHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHHHHHHHHHh-----CCCcccccccHHHHHhhccCCCc
Confidence 566654 44445555655442 22233 3344566776654444432 2222211 0012
Q ss_pred HHHHHHhcCchhhHHHHHHHHHHHh-cCCCcc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhH--HHHHH
Q 022531 156 LVNIYITASHLVNAESSTLVEAEKS-ITQRQW---ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY--ICILS 229 (295)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~ 229 (295)
.+...+..|+.+-+.. +.+. +..++. .-.+.+.. .+..++.....++.+.+.+.|..++.... ...+.
T Consensus 151 ~L~~A~~~~~~~~v~~-----Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKI-----LLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp HHHHHHHHTCHHHHHH-----HHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred HHHHHHHcCCHHHHHH-----HHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 3444556677665444 3333 433332 22333333 34566666667777778888876664321 13455
Q ss_pred HHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCC
Q 022531 230 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA 293 (295)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 293 (295)
..++.|+.+-+..+++..-.. ....|..-.+. +...++.|+. ++.+.+++.|..|+..
T Consensus 225 ~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~-l~~A~~~~~~----~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTA-LLLAVELKLK----KIAELLCKRGASTDCG 282 (285)
T ss_dssp HHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCH-HHHHHHTTCH----HHHHHHHHHSSCSCCS
T ss_pred HHHHcCCHHHHHHHHhccCCC-ccccCCCCCcH-HHHHHHcCcH----HHHHHHHHcCCCCCcc
Confidence 566778877655555421110 11122222223 3334455655 4555666778887753
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.27 E-value=1.7 Score=29.06 Aligned_cols=70 Identities=10% Similarity=0.091 Sum_probs=55.0
Q ss_pred HHHHccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 022531 52 HLYAGAK-WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 122 (295)
Q Consensus 52 ~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 122 (295)
..+.+.. +.=+..+-++.+...++.|++.+..+.+++|-+.+++..|+++|+-.+.+ ..+...+|..+++
T Consensus 60 ~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 60 TYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3344444 45567778888888999999999999999999999999999999988765 3344556777664
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.27 E-value=1.7 Score=29.02 Aligned_cols=70 Identities=6% Similarity=-0.103 Sum_probs=37.8
Q ss_pred cCCCccccHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 181 ITQRQWITYDFLIILYAGLGN---KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 181 ~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
+..|+..+--.+..++.+..+ ..+++.+++.+...+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 333444444444445555443 3456666666665431111222334566677777777777777777663
No 254
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=91.86 E-value=2.7 Score=30.39 Aligned_cols=52 Identities=8% Similarity=-0.056 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhccCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 200 GNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 200 g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
+...+..++|..|...|+.... ..|......+...|++.+|.++|+.-++.+
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3366777788887777765443 335567777777788888888887776654
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.35 E-value=5.5 Score=33.00 Aligned_cols=250 Identities=12% Similarity=0.053 Sum_probs=125.2
Q ss_pred cChhHHHHHHhhcccC------CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH----Hhc
Q 022531 25 FGIHSGERYFEGLPLS------AK-TSETYTALLHLYAGAKWTEKAEELFERVKQS-NLSFNALMYNEMMTLY----MSV 92 (295)
Q Consensus 25 ~~~~~A~~~~~~~~~~------~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~----~~~ 92 (295)
|+++.|.+.+-.+... .+ +......++..|...|+++...+.+..+... |..+ .....+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 6677777766444322 12 4556777778888888888877777665533 3222 2223333322 222
Q ss_pred CCHHHH--HHHHHHHHhCCCCCChHh---------HHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCCC---HHHHHHHH
Q 022531 93 GQVEKV--ALVVEEIKRKNVVPDIFT---------YNLWISSCAATLNIDQVKKFLDEMSCDS-GGSDD---WVKYVNLV 157 (295)
Q Consensus 93 ~~~~~a--~~~~~~m~~~~~~p~~~~---------~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---~~~~~~l~ 157 (295)
...+.. ..+.+.+. .+... .+ ...|...+...|++.+|.+++..+.... +..+. ...+...+
T Consensus 108 ~~~d~~~~~~~i~~l~--~vte~-kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 108 KSLDLNTRISVIETIR--VVTEN-KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp CTTHHHHHHHHHHCCS--SSSSC-CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH--HHhcc-chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 222221 11111111 12111 11 2345666777778888888777766531 21111 23455666
Q ss_pred HHHHhcCchhhHHHHHHHHHHH----hcCCCc--cccHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCCCHHhH----HH
Q 022531 158 NIYITASHLVNAESSTLVEAEK----SITQRQ--WITYDFLIILYAGLGNKDKIDQIWKSLRMT-KQKMTSRNY----IC 226 (295)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~----~~ 226 (295)
..|...+++..|.. +...+.. ....|+ ...+..++..+...+++.+|-..|.+.... ...-+...+ ..
T Consensus 185 rl~l~~~d~~~a~~-~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 185 ELSILKGDYSQATV-LSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHTCHHHHHH-HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHH-HHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 77777777777777 6665432 111121 133445556666677777777666655332 111122222 22
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccC--ChHHHHHHHH
Q 022531 227 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG--LTEKANEFHM 281 (295)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~ 281 (295)
++.+..-.+....-..++........ -++...|..++.+|.... +++.+.+.|.
T Consensus 264 ~v~~~iLa~~~~~~~~ll~~~~~~~~-~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 264 IVYFLVLSPYGNLQNDLIHKIQNDNN-LKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHHHHSSCSSTTHHHHHSHHHHSS-CHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHHHHHhCCCCchHHHHHHHHhhccc-ccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 33333334444444444444444433 255667777777776642 3444444443
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.25 E-value=5.1 Score=32.51 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=15.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHH
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVK 71 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~ 71 (295)
....|...|.+.|+.++..+++....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556666666666666666665543
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.15 E-value=2 Score=35.38 Aligned_cols=125 Identities=12% Similarity=0.126 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChHhHHHHHHHHHccCCHHHHHH
Q 022531 60 TEKAEELFERVKQSNL-SF-NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV--PDIFTYNLWISSCAATLNIDQVKK 135 (295)
Q Consensus 60 ~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~ 135 (295)
+++.........+... .. -..+...+...|.+.|++++|.+.|.++...-.. --...+-.+++.+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4444444444443221 11 2336778999999999999999999999874322 235668888999999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHH----HHHHHhcCchhhHHHHHHHHHHHhcCCCc
Q 022531 136 FLDEMSCDSGGSDDWVKYVNL----VNIYITASHLVNAESSTLVEAEKSITQRQ 185 (295)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (295)
.+.++.......+++..-+.+ ...+...+++..|.. .|.+........+
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~-~f~e~~~t~~~~e 242 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAK-LLVDSLATFTSIE 242 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHH-HHHHHHHHSCCSC
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHH-HHHHHhccCCccc
Confidence 998876531222333322221 222345688999988 6766665544433
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.90 E-value=7.5 Score=33.76 Aligned_cols=115 Identities=11% Similarity=-0.020 Sum_probs=64.8
Q ss_pred chhhHHHHHHHHHHHhcCCCccccHHH----HHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHH
Q 022531 165 HLVNAESSTLVEAEKSITQRQWITYDF----LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 240 (295)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 240 (295)
+.+.|.. .+........ .+...... +.......+...++...+...... .++.......++...+.|+++.|
T Consensus 229 d~~~A~~-~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARL-MIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHH-HHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHH-HHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 5566766 5655543332 22222222 222222334244555566554332 34444444555666678999999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 022531 241 GEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
.+.|..|...... ...-.-=+..++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~~--~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE--KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG--SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc--cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999888653321 222222256677888999999999888764
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.31 E-value=3.6 Score=31.27 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=29.5
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 022531 124 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 179 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (295)
..+.|+++++++....-++. .|-|...-..+++.+|-.|+++.|.+ -++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~-QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADE-QLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHH
Confidence 44556666666655555542 24455555566666666666666666 4444333
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.71 E-value=2.5 Score=26.50 Aligned_cols=85 Identities=9% Similarity=-0.030 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHH
Q 022531 129 NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQI 208 (295)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 208 (295)
..++|..+-+.+... +. ...+--.=+..+...|++++|.. .....+.||...|-.|.. .+.|-.+++...
T Consensus 21 ~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~-----l~~~~c~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 21 CHEEALCIAEWLERL-GQ--DEAARLIRISSLANQGRYQEALA-----FAHGNPWPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp CHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHG-----GGTTCCCGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHH-----hcCCCCCchHHHHHHHHH--HhcccHHHHHHH
Confidence 457777777776665 22 22222233445667788888877 344556777777766654 567777777777
Q ss_pred HHHHHhccCCCCHHhH
Q 022531 209 WKSLRMTKQKMTSRNY 224 (295)
Q Consensus 209 ~~~m~~~~~~~~~~~~ 224 (295)
+.++..+| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 77777665 4444444
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.41 E-value=2.7 Score=26.41 Aligned_cols=85 Identities=7% Similarity=0.050 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHH
Q 022531 129 NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQI 208 (295)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 208 (295)
..++|..+-+.+... +. ...+--.=+..+...|++++|.. .....+.||...|-+|.. .+.|-.+++...
T Consensus 22 ~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~-----l~~~~c~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQ-----QGNKLAYPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHH-----HHTTSCCGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHH-----hcCCCCCchHHHHHHHHH--HhcccHHHHHHH
Confidence 457777777776665 22 22222233445667788888877 445566777777766654 467777777777
Q ss_pred HHHHHhccCCCCHHhH
Q 022531 209 WKSLRMTKQKMTSRNY 224 (295)
Q Consensus 209 ~~~m~~~~~~~~~~~~ 224 (295)
+.++..+| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 76776665 4444444
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.27 E-value=3.7 Score=27.79 Aligned_cols=67 Identities=7% Similarity=-0.050 Sum_probs=40.8
Q ss_pred CCccccHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCCCHHh-HHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 183 QRQWITYDFLIILYAGLGN---KDKIDQIWKSLRMTKQKMTSRN-YICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 183 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
.++..+--.+..++.+..+ ..+++.+++.+...+. ....- .-.|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~-~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC-STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444445555566554 4467777777766431 12333 234666778888888888888888774
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.52 E-value=2.6 Score=29.38 Aligned_cols=56 Identities=9% Similarity=-0.028 Sum_probs=29.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCh-------HhHHHHHHHHHccCCHHHHHHHHHHH
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKN-VVPDI-------FTYNLWISSCAATLNIDQVKKFLDEM 140 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~ 140 (295)
=+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...+++.+|...|++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3445555666666665555543211 12221 23445555666666666666666664
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.34 E-value=4.4 Score=27.44 Aligned_cols=68 Identities=6% Similarity=-0.039 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 76 SFNALMYNEMMTLYMSVGQ---VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 76 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.|+..+--....+++++.+ ..+++.+++++.+.+..-.-.....|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4566665566666666654 3456677777666432212333444555677777777777777777653
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=88.19 E-value=7.2 Score=31.17 Aligned_cols=71 Identities=11% Similarity=0.087 Sum_probs=37.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChHhHHH
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ--VEKVALVVEEIKRKNVVPDIFTYNL 119 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ 119 (295)
....+|.-|...++.++|...++++..... .......+|..-...++ -+.+-.++..+.. ++-+.......
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~g 128 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKS 128 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 345667777777888888888877654332 12233334443333332 3445555555553 44433333333
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.81 E-value=9.8 Score=30.88 Aligned_cols=232 Identities=11% Similarity=0.036 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCC---C---CHHHHHHHHHHHHcc-CcHHHHHHHHHHHHhCCCCCCHHHH--
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSA---K---TSETYTALLHLYAGA-KWTEKAEELFERVKQSNLSFNALMY-- 82 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---p---~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~-- 82 (295)
.....|...|.+.|+.++..+++......- | ....-..|+..+... +..+.-.++..+..+..- -...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 355678899999999999999998876641 2 456677888888774 334555555554443210 011223
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hHhHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCCCHHH
Q 022531 83 ----NEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-----IFTYNLWISSCAATLNIDQVKKFLDEMSCDS-GGSDDWVK 152 (295)
Q Consensus 83 ----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 152 (295)
.-|+..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+....... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2678899999999999999998876311112 2346666778889999999999998876532 22233433
Q ss_pred HHH----HHHHHH-hcCchhhHHHHHHHHHHHhcCCCc------cccHHHHHHHHHhcCCHHHHHHHHH-HHHhccCCCC
Q 022531 153 YVN----LVNIYI-TASHLVNAESSTLVEAEKSITQRQ------WITYDFLIILYAGLGNKDKIDQIWK-SLRMTKQKMT 220 (295)
Q Consensus 153 ~~~----l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~~~ 220 (295)
... -...+. ..+++..|.. .|.+......... ...|..|. +. -.++..+.-.++. .....-..|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~-~F~eaf~~f~~~~~~~~~~~lkYlvL~-aL-l~~~r~el~~~l~~~~~~~~~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFS-YFYEAFEGFDSVDSVKALTSLKYMLLC-KI-MLGQSDDVNQLVSGKLAITYSGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHH-HHHHHHHHHTTTCHHHHHHHHHHHHHH-HH-HTTCGGGHHHHHHSHHHHTTCSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHH-HHHHHHhcccccccHHHHHHHHHHHHH-HH-HcCCHHHHHHHhccccccccCCcc
Confidence 221 223345 6899999999 6666654433222 12232222 22 2233333333322 1111112444
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 221 SRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
...+..++.+| ..+++....+++....
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 44455566654 4566666666655543
No 267
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=87.74 E-value=5.3 Score=29.16 Aligned_cols=17 Identities=12% Similarity=-0.136 Sum_probs=9.8
Q ss_pred HHHhccChhHHHHHHhh
Q 022531 20 LMTKVFGIHSGERYFEG 36 (295)
Q Consensus 20 ~~~~~~~~~~A~~~~~~ 36 (295)
..++.|+++....+++.
T Consensus 15 ~A~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 15 KATQYGIYERCRELVEA 31 (240)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHc
Confidence 34556666666666553
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.58 E-value=4.7 Score=26.92 Aligned_cols=68 Identities=7% Similarity=-0.014 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 76 SFNALMYNEMMTLYMSVGQV---EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 76 ~p~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.|+..+--....+++++.+. .+++.+++++.+.+..-....+..+.-++.+.|++++|.++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 46666666667777776643 467778877776542112344555666788888888888888887763
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=87.51 E-value=5.3 Score=27.42 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=20.7
Q ss_pred HHHHHHHHHhccCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 205 IDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 205 a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
..++|..|...|+.... ..|......+...|++.+|.++|+.-++.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44455555444443322 22334444444455555555555544443
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.92 E-value=3.8 Score=25.74 Aligned_cols=89 Identities=7% Similarity=-0.074 Sum_probs=59.1
Q ss_pred ccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022531 24 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 103 (295)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 103 (295)
..+-++|..+-+.+...+-...+--+-+..+...|++++|..+.+.+. .||...|-+|.. .+.|-.+++...+.
T Consensus 19 ~H~HqEA~tIAdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 345778888877776653322222233456778899999988876554 578888876654 47788888888887
Q ss_pred HHHhCCCCCChHhHHH
Q 022531 104 EIKRKNVVPDIFTYNL 119 (295)
Q Consensus 104 ~m~~~~~~p~~~~~~~ 119 (295)
++..+|- |....|..
T Consensus 93 ~la~sg~-p~~q~Fa~ 107 (115)
T 2uwj_G 93 GLGGSSD-PALADFAA 107 (115)
T ss_dssp HHHTCSS-HHHHHHHH
T ss_pred HHHhCCC-HHHHHHHH
Confidence 8877653 45555543
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=86.77 E-value=2.2 Score=29.69 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhccCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCH
Q 022531 203 DKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI 257 (295)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 257 (295)
+...++|..|...|+.... ..|......+...|++.+|.++|..-++.+- .|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A-~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA-EPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHH
Confidence 4466677777777765443 3355666677777788888887777766543 3533
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=85.13 E-value=9.6 Score=28.60 Aligned_cols=218 Identities=11% Similarity=0.021 Sum_probs=103.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH---hHHHHHHHHH
Q 022531 49 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF---TYNLWISSCA 125 (295)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~ 125 (295)
+.+...++.|+++.+..+++.-.......+..- .+.+...+..|+.+- ++.+.+.|..|+.. -.+ .+...+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g-~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGG-WTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGAT-PFLLAA 80 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTC-CCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCC-HHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCC-CcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCC-HHHHHH
Confidence 445556678887766655543222211112111 234555566777654 44445556554432 222 333445
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccc-------------cH
Q 022531 126 ATLNIDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI-------------TY 189 (295)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~ 189 (295)
..|+.+-+..++ +. |..++ ..-. ..+...+..|+.+-... +.+.+..++.. -.
T Consensus 81 ~~~~~~~v~~Ll----~~-g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~-----Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 81 IAGSVKLLKLFL----SK-GADVNECDFYGF-TAFMEAAVYGKVKALKF-----LYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHTCHHHHHHHH----HT-TCCTTCBCTTCC-BHHHHHHHTTCHHHHHH-----HHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HcCCHHHHHHHH----Hc-CCCCCccCcccC-CHHHHHHHhCCHHHHHH-----HHHhCCCcccccccHHHHHhhccCCC
Confidence 567765444443 33 33332 2222 23444556676654433 55556555432 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHH---hHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHH--HHHHHH
Q 022531 190 DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR---NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS--ACNRLL 264 (295)
Q Consensus 190 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~ 264 (295)
+ .+...+..|+.+-+..+++. .|..++.. -.+.+ ...+..++.....++++.+.+.+. .++.. .-.+.+
T Consensus 150 t-~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~-~~~~~~~~g~t~L 223 (285)
T 1wdy_A 150 T-ALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGA-DVNVRGERGKTPL 223 (285)
T ss_dssp C-HHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTC-CSSCCCTTSCCHH
T ss_pred c-HHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCC-CCCCcCCCCCcHH
Confidence 2 33344566776554444431 25544432 22333 334455665555566666666553 34332 122344
Q ss_pred HHHHccCChHHHHHHHHHHHh-cCCCCCCC
Q 022531 265 GAFSDVGLTEKANEFHMLLLQ-KNCAPTNA 293 (295)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~ 293 (295)
...+..|+.+- ++.+++ .|..++..
T Consensus 224 ~~A~~~~~~~~----v~~Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 224 ILAVEKKHLGL----VQRLLEQEHIEINDT 249 (285)
T ss_dssp HHHHHTTCHHH----HHHHHHSSSCCTTCC
T ss_pred HHHHHcCCHHH----HHHHHhccCCCcccc
Confidence 55566677654 444444 56666643
No 273
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=84.62 E-value=11 Score=28.63 Aligned_cols=210 Identities=8% Similarity=-0.036 Sum_probs=97.9
Q ss_pred hccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 022531 23 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 102 (295)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 102 (295)
+..+..+..+++..-....+|..-++.|..+ +..|+.+-+..+++. |..++...-.+.+...+..|+.+-+
T Consensus 8 ~~~~~~~v~~lL~~~~~~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v---- 78 (285)
T 3kea_A 8 NTWKSKQLKSFLSSKDTFKADVHGHSASYYA-IADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIV---- 78 (285)
T ss_dssp GGCCHHHHHHHHHSTTTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHH----
T ss_pred HhcCHHHHHHHHHhCCCCccCCCCCCHHHHH-HHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHH----
Confidence 4456666777775532223454445544444 456777665555543 4333222122344555566765544
Q ss_pred HHHHhCCCCCChH---hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHhcCchhhHHHHHHHH
Q 022531 103 EEIKRKNVVPDIF---TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW---VKYVNLVNIYITASHLVNAESSTLVE 176 (295)
Q Consensus 103 ~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (295)
+.+.+.|..++.. -++. +...+..|+.+-+..+++. |..++. .-+.+.+...+..|+.+-+..
T Consensus 79 ~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~----- 147 (285)
T 3kea_A 79 KILLFSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSY----- 147 (285)
T ss_dssp HHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHH-----
T ss_pred HHHHHCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHH-----
Confidence 3444556554432 2333 3334556776655555443 222221 111234455556676654444
Q ss_pred HHHhcCCCccc-cHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCC
Q 022531 177 AEKSITQRQWI-TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 255 (295)
Q Consensus 177 ~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 255 (295)
+.+.+..+... .-.+.+...+..|+.+-+.-+++.-..... .+..-.+..+...+..|+.+- ++.+.+.|. .+
T Consensus 148 Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~----v~~Ll~~ga-d~ 221 (285)
T 3kea_A 148 FLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEM----LQALFKYDI-NI 221 (285)
T ss_dssp HHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHH----HHHHTTSCB-CS
T ss_pred HHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHH----HHHHHHcCC-CC
Confidence 44445443221 233444455677777766555554322221 111122233444555666543 344444443 34
Q ss_pred CHH
Q 022531 256 DIS 258 (295)
Q Consensus 256 ~~~ 258 (295)
+..
T Consensus 222 ~~~ 224 (285)
T 3kea_A 222 YSA 224 (285)
T ss_dssp TTT
T ss_pred CCC
Confidence 443
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.17 E-value=14 Score=29.20 Aligned_cols=112 Identities=8% Similarity=-0.019 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHH----HHHHHHhCCCCCCHHHHHHHHHH
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEE----LFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
+|.++..-|.+.+++++|.+++-. =...+.+.|+...+-+ +++.+.+.++++|......|+..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 444555555555555555554322 1223334455444333 33555566677777766666666
Q ss_pred HHhcCCHH-HHHHHHHHHH----hCC--CCCChHhHHHHHHHHHccCCHHHHHHHH
Q 022531 89 YMSVGQVE-KVALVVEEIK----RKN--VVPDIFTYNLWISSCAATLNIDQVKKFL 137 (295)
Q Consensus 89 ~~~~~~~~-~a~~~~~~m~----~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~ 137 (295)
+.....-+ .=.++.+++. +.| ..-|......+...|.+.+++.+|...|
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 65544211 0111222221 112 2234555566667777777777776665
No 275
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=83.40 E-value=14 Score=28.76 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=17.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHh
Q 022531 47 YTALLHLYAGAKWTEKAEELFERVKQ 72 (295)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~ 72 (295)
...++.-|...|+.++|...++++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 34566667677777777777776543
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=82.89 E-value=11 Score=27.55 Aligned_cols=82 Identities=10% Similarity=0.003 Sum_probs=35.8
Q ss_pred HHccCcHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh--HHHHHHHHHccCC
Q 022531 54 YAGAKWTEKAEELFERVKQSNLSFNALM--YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT--YNLWISSCAATLN 129 (295)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~ 129 (295)
.++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 3455666666666665555443332211 112333344455543 3333444444433211 1122333345566
Q ss_pred HHHHHHHHHH
Q 022531 130 IDQVKKFLDE 139 (295)
Q Consensus 130 ~~~a~~~~~~ 139 (295)
.+-+..+++.
T Consensus 92 ~~~~~~Ll~~ 101 (241)
T 1k1a_A 92 PTCLRALLDS 101 (241)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6555555444
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.80 E-value=22 Score=29.18 Aligned_cols=60 Identities=15% Similarity=0.050 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCc--cccHHHHHHHHHhcCCHHHHHHHHHHH
Q 022531 152 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ--WITYDFLIILYAGLGNKDKIDQIWKSL 212 (295)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 212 (295)
+...+...|.+.|+++.|.+ .+.++......+. ...+-..++.+...+++..+...+++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~-~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEK-TLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHH-HHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33445555555555555555 5555444332221 233444445555555555555555544
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=80.64 E-value=13 Score=27.36 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhccCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 203 DKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
++..++|..|...|+.... ..|......+...|++.+|.++|+.-++.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4666777777766665443 335566666677777777777777766654
No 279
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.50 E-value=19 Score=28.17 Aligned_cols=163 Identities=11% Similarity=-0.024 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHH-
Q 022531 95 VEKVALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS- 172 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~- 172 (295)
.++.++-++.-.+.|--= --.+|.++..-|.+.+++++|++++..-- ..+.+.|+...|.++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga----------------~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGA----------------LSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------------HHHHHCCCcchHHHHH
Confidence 444444444444443110 12345556666666666666666543321 223334554444441
Q ss_pred --HHHHHHHhcCCCccccHHHHHHHHHhcCCHH-HHHHHHHHHHh----ccC--CCCHHhHHHHHHHHHhcCChHHHHHH
Q 022531 173 --TLVEAEKSITQRQWITYDFLIILYAGLGNKD-KIDQIWKSLRM----TKQ--KMTSRNYICILSSYLMLGHLKEVGEI 243 (295)
Q Consensus 173 --~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~----~~~--~~~~~~~~~li~~~~~~~~~~~A~~~ 243 (295)
+.+...+.+.+++......++..+......+ .-.++++++.+ .|- .-++.....+...|.+.|++.+|...
T Consensus 77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 2333334555666656666666555433211 22334444432 211 12344455666677777777766554
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHcc---CChHHHHH
Q 022531 244 IDQWKQSATSDFDISACNRLLGAFSDV---GLTEKANE 278 (295)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~ 278 (295)
| +. +. .-+...+..++.-+... |...++--
T Consensus 157 ~--i~--~~-~~s~~~~a~~l~~w~~~~~~~~~~e~dl 189 (312)
T 2wpv_A 157 F--ML--GT-HDSMIKYVDLLWDWLCQVDDIEDSTVAE 189 (312)
T ss_dssp H--HT--SC-HHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred H--Hh--CC-CccHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 3 21 10 11345555555555444 55555433
No 280
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=79.95 E-value=5 Score=28.48 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=7.0
Q ss_pred HHHHHHHHhccCCCC
Q 022531 206 DQIWKSLRMTKQKMT 220 (295)
Q Consensus 206 ~~~~~~m~~~~~~~~ 220 (295)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 344444445554444
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=79.71 E-value=8.1 Score=29.51 Aligned_cols=204 Identities=15% Similarity=0.054 Sum_probs=97.2
Q ss_pred HHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcC
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMMTLYMSVG 93 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~ 93 (295)
.+...+..|+.+-+..+++.-.. ++...-.+.+...+..|+.+-+..++ +.|..++. .-+ +.+...+..|
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~-t~L~~A~~~g 106 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGAL--KNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGN-TALYYAVDSG 106 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGG--GSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSC-CHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCC-cHHHHHHHcC
Confidence 35556678888888777765322 11111123344445667765444444 44543332 222 2344445667
Q ss_pred CHHHHHHHHHHHHhCCCCCChHh---HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHH
Q 022531 94 QVEKVALVVEEIKRKNVVPDIFT---YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 170 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (295)
+.+-+.-+++ .|..++... +.+.+...+..|+.+-+..++ +.+....+...-.+.+...+..|+.+-+.
T Consensus 107 ~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 107 NMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL----SEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp CHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH----TTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCccccccCCccHHHHHHHcChHHHHH
Confidence 7655544443 354444322 234455556667766444443 33111122212234455556777776555
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 171 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
. +++.-.. ....+..-++..+...+..|+. ++.+.+.+.|..|+..... -+..|+.+-+.-+++.
T Consensus 179 ~-Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~-----a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 179 L-LLDYMTS-TNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLE-----NVLLDDAEIAKMIIEK 243 (285)
T ss_dssp H-HHHHHHH-TCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGG-----GGTTTCHHHHHHHHHH
T ss_pred H-HHHcCCC-CCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChh-----hhhcCCHHHHHHHHHc
Confidence 5 4433211 1112222233323333455654 4555566778877765521 1345565554444443
No 282
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.51 E-value=21 Score=30.18 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCh--Hh-HHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 79 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKN-VVPDI--FT-YNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 79 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~--~~-~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
...+|.+++.|...+.+++|..+..+..--- ..++. .+ +..+...+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4578999999999999999999999875210 01121 12 223455677788999999999998764
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.19 E-value=18 Score=26.12 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 022531 60 TEKAEELFERVKQSNLSF-NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP 112 (295)
Q Consensus 60 ~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 112 (295)
..++..+|..|...|+-- -+..|......+...|++++|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344445555444443221 12334444444444555555555555544444333
No 284
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.71 E-value=28 Score=27.52 Aligned_cols=140 Identities=13% Similarity=0.064 Sum_probs=67.4
Q ss_pred HHhcCCHHHHHHHH----HHHHhCCCCCChHhHHHHHHHHHccCCHH-HHHHHHHHHhh----cC-CCCCCHHHHHHHHH
Q 022531 89 YMSVGQVEKVALVV----EEIKRKNVVPDIFTYNLWISSCAATLNID-QVKKFLDEMSC----DS-GGSDDWVKYVNLVN 158 (295)
Q Consensus 89 ~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~----~~-~~~~~~~~~~~l~~ 158 (295)
+.+.|+...|..+- +-+.+.++++|.....-++..+.....-+ .-..+.+++.+ .+ ...-++.....+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 44455554443333 44455667777777666766666544311 11223333222 11 12234455556677
Q ss_pred HHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhH-HHHHHHHHhcCCh
Q 022531 159 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY-ICILSSYLMLGHL 237 (295)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~ 237 (295)
.|.+.+++.+|+. .+- .+..++...|..++.-+...+... ....| ...+-.|.-.+++
T Consensus 145 ~~~~e~~~~~Ae~-H~i----lg~~~s~~~~a~mL~ew~~~~~~~----------------e~dlfiaRaVL~yL~l~n~ 203 (336)
T 3lpz_A 145 LYVEEGEFEAAEK-HLV----LGTKESPEVLARMEYEWYKQDESH----------------TAPLYCARAVLPYLLVANV 203 (336)
T ss_dssp HHHHTTCHHHHHH-HHT----TSCTTHHHHHHHHHHHHHHTSCGG----------------GHHHHHHHHHHHHHHTTCH
T ss_pred HHHccCCHHHHHH-HHH----hcCCchHHHHHHHHHHHHHhcCCc----------------cHHHHHHHHHHHHHHhCCH
Confidence 7777777777766 331 122223344444433322222111 11112 2233445567788
Q ss_pred HHHHHHHHHHhh
Q 022531 238 KEVGEIIDQWKQ 249 (295)
Q Consensus 238 ~~A~~~~~~~~~ 249 (295)
..|..+++.+.+
T Consensus 204 ~~A~~~~~~f~~ 215 (336)
T 3lpz_A 204 RAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887766654
No 285
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=75.54 E-value=17 Score=24.92 Aligned_cols=65 Identities=14% Similarity=0.278 Sum_probs=34.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ--VEKVALVVEEIKRKNVV 111 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~ 111 (295)
....++.-|...|+.++|.+.++++....+ -...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 345566666677777777777777653211 112233344444444322 44566666666665543
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=75.00 E-value=15 Score=24.25 Aligned_cols=64 Identities=14% Similarity=0.282 Sum_probs=33.8
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 022531 47 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ--VEKVALVVEEIKRKNVV 111 (295)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~ 111 (295)
...++.-|...|+.++|.+.++++....+ -...+...+..++-+.++ .+.+.+++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44566666667777777777777653211 112233334444444332 35566666666665543
No 287
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=73.74 E-value=24 Score=25.91 Aligned_cols=29 Identities=10% Similarity=0.136 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 022531 61 EKAEELFERVKQSNLSFNALMYNEMMTLY 89 (295)
Q Consensus 61 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 89 (295)
+.+..+++.+.+.|+--|..--.+.+...
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~ 121 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTM 121 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34444444455554433333333333333
No 288
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=73.17 E-value=23 Score=25.51 Aligned_cols=20 Identities=10% Similarity=-0.129 Sum_probs=12.3
Q ss_pred HHHHHccCcHHHHHHHHHHH
Q 022531 51 LHLYAGAKWTEKAEELFERV 70 (295)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m 70 (295)
+...++.|+++....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 44455667777776666543
No 289
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=72.42 E-value=22 Score=28.00 Aligned_cols=217 Identities=11% Similarity=0.014 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHhccChhHHHHHHhhcccC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 022531 10 SDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 88 (295)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 88 (295)
|..-++ .+...+..|+.+.+..+++.-... ..|..-++.|. ..+..|+.+-+.-+++. |..++...-.+.+..
T Consensus 17 d~~g~t-~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 17 DDENME-KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALH-LACKFGCVDTAKYLASV----GEVHSLWHGQKPIHL 90 (364)
T ss_dssp CHHHHH-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHHCCHHHHHHHHHH----CCCCCCBTTBCHHHH
T ss_pred CCCCCC-HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHH-HHHHcCCHHHHHHHHHC----CCCccccCCCCHHHH
Confidence 444344 455556789998888888753221 12333334443 33456776655555543 322222112234444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCh--------------------HhHHHHHHHHHccC--CHHHHHHHHHHHhhcCCC
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVPDI--------------------FTYNLWISSCAATL--NIDQVKKFLDEMSCDSGG 146 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p~~--------------------~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~ 146 (295)
.+..|+.+-+..+++.....|..|+. .-.+.|. ..+..| +.+-+..+++. ... -.
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~v~~Ll~~-ga~-~~ 167 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLEMIKILVQL-GAS-PT 167 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHHHHHHHHHH-TCC-TT
T ss_pred HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHHHHHHHHHc-CCC-Cc
Confidence 56678888777777765544444433 1233333 334455 55544444433 111 01
Q ss_pred CCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCC-----Cc---cccHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 022531 147 SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ-----RQ---WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK 218 (295)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 218 (295)
..+..-. +.+...+..|+.+-+.. +.+.+.. .+ ..-++.|. ..+..|+.+- .+.+.+.|..
T Consensus 168 ~~d~~g~-t~L~~A~~~g~~~~v~~-----Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~----v~~Ll~~gad 236 (364)
T 3ljn_A 168 AKDKADE-TPLMRAMEFRNREALDL-----MMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDV----AMRFVEMGID 236 (364)
T ss_dssp CCCTTSC-CHHHHHHHTTCHHHHHH-----HHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHH----HHHHHTTTCC
T ss_pred ccCCCCC-CHHHHHHHcCCHHHHHH-----HHhcccccccccccccCCCCCcHHH-HHHHcCCHHH----HHHHHHcCCC
Confidence 1111112 23344456677665444 3333332 22 12222333 3356676554 3444556666
Q ss_pred CCHHhH--HHHHHHHHhcCChHHHHHHHHH
Q 022531 219 MTSRNY--ICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 219 ~~~~~~--~~li~~~~~~~~~~~A~~~~~~ 246 (295)
++.... ..-+...++.|+.+-+..+++.
T Consensus 237 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 554321 1234445566887776666664
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=71.77 E-value=26 Score=25.42 Aligned_cols=190 Identities=12% Similarity=0.039 Sum_probs=91.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh--HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHH--HHHHHHHH
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT--YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK--YVNLVNIY 160 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~ 160 (295)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++ . |..++... -...+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~-g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT----A-GASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH----T-TCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH----c-CCCccccCCCCCCHHHHH
Confidence 35556778999888888887777765554321 1123444556677765444443 3 33332211 11234444
Q ss_pred HhcCchhhHHHHHHHHHHHhcCCC---ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHh---HHHHHHHHHhc
Q 022531 161 ITASHLVNAESSTLVEAEKSITQR---QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN---YICILSSYLML 234 (295)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~ 234 (295)
+..|+.+-... +++........+ +..-.+.|. ..+..|+.+-+ +.+.+.|..++... -...+...+..
T Consensus 87 ~~~~~~~~~~~-Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 87 CEHRSPTCLRA-LLDSAAPGTLDLEARNYDGLTALH-VAVNTECQETV----QLLLERGADIDAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp HHTTCHHHHHH-HHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred HHcCCHHHHHH-HHHcCCCccccccccCcCCCcHHH-HHHHcCCHHHH----HHHHHcCCCcccccccCCCcHHHHHHHc
Confidence 56777765555 333211100122 222222333 33455665444 44445565554322 12345555677
Q ss_pred CChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC
Q 022531 235 GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 292 (295)
|+.+-+..+++.-.. ....|..-.+ .+...+..|+.+ +++.+++.|..|+.
T Consensus 161 ~~~~~v~~Ll~~g~~--~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 161 NSLSMVQLLLQHGAN--VNAQMYSGSS-ALHSASGRGLLP----LVRTLVRSGADSSL 211 (241)
T ss_dssp TCHHHHHHHHHTTCC--TTCBCTTSCB-HHHHHHHHTCHH----HHHHHHHTTCCTTC
T ss_pred CCHHHHHHHHHcCCC--CCCcCCCCCC-HHHHHHHcCCHH----HHHHHHhcCCCCCC
Confidence 887665555543111 1112222222 333445566654 45555567777664
No 291
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=71.70 E-value=8.7 Score=28.61 Aligned_cols=55 Identities=9% Similarity=-0.070 Sum_probs=30.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChH-------hHHHHHHHHH--ccCCHHHHHHHHHHH
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRKNVVPDIF-------TYNLWISSCA--ATLNIDQVKKFLDEM 140 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~li~~~~--~~~~~~~a~~~~~~~ 140 (295)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344456677777777777666655544422 2233443332 556666666665543
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=70.63 E-value=30 Score=25.70 Aligned_cols=89 Identities=12% Similarity=0.053 Sum_probs=49.4
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 022531 50 LLHLYAGAKWTEKAEELFERVKQS--NLSF----NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 123 (295)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 123 (295)
-++.+....++++|..++++..+. ++++ +.......+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 466777788888888888766532 2221 111222233333333333344444555533 3455556666777
Q ss_pred HHccCCHHHHHHHHHHHh
Q 022531 124 CAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~ 141 (295)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 788888888888775543
No 293
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=70.40 E-value=26 Score=24.95 Aligned_cols=30 Identities=7% Similarity=0.033 Sum_probs=13.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 022531 219 MTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
++...-...+.++.+.+. ..+...+..+.+
T Consensus 155 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 344444444555555444 234444444443
No 294
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.66 E-value=18 Score=22.79 Aligned_cols=15 Identities=7% Similarity=-0.033 Sum_probs=6.9
Q ss_pred HHhcCChHHHHHHHH
Q 022531 231 YLMLGHLKEVGEIID 245 (295)
Q Consensus 231 ~~~~~~~~~A~~~~~ 245 (295)
+...|++++|..+.+
T Consensus 50 LmNrG~Yq~Al~l~~ 64 (116)
T 2p58_C 50 LMNRGDYASALQQGN 64 (116)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHcchhHHHHHHhcC
Confidence 344455555444443
No 295
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=65.17 E-value=54 Score=26.56 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=52.9
Q ss_pred HHHHHHHhccChhHHHHHHhhcccC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 022531 16 TRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 94 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 94 (295)
+.+...+..|+++-+..+++.-... .++....+ .+...+..|+.+-+.-+++.-...+. .+..- .+.+...+..|+
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g-~t~L~~A~~~g~ 92 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTEVAKYLLQNKAKVNA-KAKDD-QTPLHCAARIGH 92 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTS-CCHHHHHHHHTC
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCC-CCHHHHHHHCCC
Confidence 4566667888888888888753221 11222222 33344556776655555543211110 11111 123444455666
Q ss_pred HHHHHHHHHHHHhCCCCCCh---HhHHHHHHHHHccCCHHHHHHHHH
Q 022531 95 VEKVALVVEEIKRKNVVPDI---FTYNLWISSCAATLNIDQVKKFLD 138 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~ 138 (295)
.+-+.-++ +.|..|+. .-.+ .+...++.|+.+.+..+++
T Consensus 93 ~~~v~~Ll----~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 93 TNMVKLLL----ENNANPNLATTAGHT-PLHIAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHHHH----HHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHH----hCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh
Confidence 55444333 33433332 1122 2333445566665555543
No 296
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=65.14 E-value=41 Score=25.23 Aligned_cols=217 Identities=7% Similarity=-0.068 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHH-HHhCCCCCChHh
Q 022531 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ----VEKVALVVEE-IKRKNVVPDIFT 116 (295)
Q Consensus 42 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----~~~a~~~~~~-m~~~~~~p~~~~ 116 (295)
++..+-...+.++.+.+. ..+...+..+... ++...-...+.++.+.|. ....+.++.. +.. .++...
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~---d~~~~v 107 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKSACV 107 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH---CSCHHH
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc---CCCHHH
Confidence 555555555666666665 3444444455443 355555566666666653 3333444442 223 245555
Q ss_pred HHHHHHHHHccCC-----HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHH
Q 022531 117 YNLWISSCAATLN-----IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 191 (295)
Q Consensus 117 ~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 191 (295)
-...+.++.+.+. ...+...+..... .++..+-...+.++++.|..+ +.. .+..+.. .++...-..
T Consensus 108 r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~----d~~~~vR~~a~~aL~~~~~~~-~~~-~L~~~l~---d~~~~vr~~ 178 (280)
T 1oyz_A 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAF----DKSTNVRRATAFAISVINDKA-TIP-LLINLLK---DPNGDVRNW 178 (280)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT----CSCHHHHHHHHHHHHTC---C-CHH-HHHHHHT---CSSHHHHHH
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHhh----CCCHHHHHHHHHHHHhcCCHH-HHH-HHHHHHc---CCCHHHHHH
Confidence 5555555555441 2344444444443 256666666667777766533 333 2332322 233333344
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHcc
Q 022531 192 LIILYAGLG-NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 270 (295)
Q Consensus 192 li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (295)
.+.+....| ....+...+..+.. .++...-...+.++.+.|+....-.+.. +.++ +++ -...+.++.+.
T Consensus 179 a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~-~l~d----~~v--r~~a~~aL~~i 248 (280)
T 1oyz_A 179 AAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCD-ELKK----NTV--YDDIIEAAGEL 248 (280)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHH-HHTS----SSC--CHHHHHHHHHH
T ss_pred HHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHH-HhcC----ccH--HHHHHHHHHhc
Confidence 444444444 12344444444433 3455555566667777775543333333 3332 232 22345556666
Q ss_pred CChHHHHHHHHHHHh
Q 022531 271 GLTEKANEFHMLLLQ 285 (295)
Q Consensus 271 g~~~~a~~~~~~m~~ 285 (295)
|.. .+...+.++.+
T Consensus 249 ~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 249 GDK-TLLPVLDTMLY 262 (280)
T ss_dssp CCG-GGHHHHHHHHT
T ss_pred Cch-hhhHHHHHHHh
Confidence 653 44555555544
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=65.07 E-value=27 Score=23.05 Aligned_cols=68 Identities=9% Similarity=0.127 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC--HHHHHHHHHHHhhcCCCCCCH
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN--IDQVKKFLDEMSCDSGGSDDW 150 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 150 (295)
..+.++.-|...|+.++|.+.++++..... -...+...+..++-+.++ .+.+..++..+... ++-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~-~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCcCHH
Confidence 356788889999999999999999853211 122344445555555432 35667777777765 444333
No 298
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=64.96 E-value=27 Score=25.31 Aligned_cols=22 Identities=18% Similarity=-0.073 Sum_probs=13.6
Q ss_pred HHHHHccCChHHHHHHHHHHHh
Q 022531 264 LGAFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 264 ~~~~~~~g~~~~a~~~~~~m~~ 285 (295)
+......|+...+.++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3445566666677777666654
No 299
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=63.56 E-value=35 Score=23.85 Aligned_cols=113 Identities=15% Similarity=0.080 Sum_probs=54.1
Q ss_pred HHHHHhccChhHHHHHHhhcccC--CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcC
Q 022531 18 IDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM--YNEMMTLYMSVG 93 (295)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~ 93 (295)
+...+..|+.+....++..-... .++..-++.|..+ ++.|+.+-+..++ +.|..++... -.+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIEIAKALI----DRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcC
Confidence 34456788888888888765422 1233333444433 4556655444444 4454333221 112334445567
Q ss_pred CHHHHHHHHHHHHhCCCCC---ChHhHHHHHHHHHccCCHHHHHHHHHH
Q 022531 94 QVEKVALVVEEIKRKNVVP---DIFTYNLWISSCAATLNIDQVKKFLDE 139 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~ 139 (295)
+.+-+..+++. .+..+ +..-.+ .+...+..|+.+-+..+++.
T Consensus 84 ~~~~~~~Ll~~---~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~ 128 (201)
T 3hra_A 84 RTEILAYMLKH---ATPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLED 128 (201)
T ss_dssp CHHHHHHHHHH---SCCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHhc---cCcccccccCCCCc-HHHHHHHcCCHHHHHHHHHc
Confidence 76655555533 22222 211122 23334556776655555544
No 300
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.33 E-value=37 Score=24.11 Aligned_cols=168 Identities=10% Similarity=-0.002 Sum_probs=92.0
Q ss_pred ChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022531 26 GIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 105 (295)
Q Consensus 26 ~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 105 (295)
+.+....+.+.+. .++...-...+..+.+.+.. .+...+.++... ++..+-...+.++.+.++.+ +...+.++
T Consensus 17 ~~~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~ 89 (211)
T 3ltm_A 17 DPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKA 89 (211)
T ss_dssp CGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHH
T ss_pred CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHH
Confidence 3333444444443 36667767777777777763 344444444443 46666667777777777643 34444444
Q ss_pred HhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCc
Q 022531 106 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ 185 (295)
Q Consensus 106 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (295)
.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|..+ +.. .+..+. ..++
T Consensus 90 l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~-~L~~~l---~d~~ 156 (211)
T 3ltm_A 90 LK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVE-PLIKAL---KDED 156 (211)
T ss_dssp TT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHH-HHHHHT---TCSS
T ss_pred Hc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHH-HHHHHH---cCCC
Confidence 43 256666666777777777654 3444444443 256666667777777776643 333 233332 2344
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 022531 186 WITYDFLIILYAGLGNKDKIDQIWKSLRM 214 (295)
Q Consensus 186 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 214 (295)
..+-...+.++.+.+. .++...+..+.+
T Consensus 157 ~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 157 GWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 4455555566666665 334444444443
No 301
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=62.76 E-value=31 Score=23.44 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=15.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 91 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
..+.+-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 38 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 38 RSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33334444444444444433333333333333333333
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=61.04 E-value=48 Score=24.60 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=58.4
Q ss_pred HHHHHHHhccChhHHHHHHhhcccC---CC-----CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022531 16 TRIDLMTKVFGIHSGERYFEGLPLS---AK-----TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT 87 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~---~p-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 87 (295)
--++.+....++++|.++++..... .+ +...-...+..-.....-.-+..+.+++.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3578888999999999998876553 11 112223334444444444555566666644 346677777888
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 022531 88 LYMSVGQVEKVALVVEEIK 106 (295)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~ 106 (295)
.+.+.|+.++|..+|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8999999999999987654
No 303
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=60.68 E-value=6.5 Score=21.92 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 022531 96 EKVALVVEEIKRKNVVPDIFTYNLWISSC 124 (295)
Q Consensus 96 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 124 (295)
++|.+.|.+|++..-.+...||...|+.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45566666555433233445666666655
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=60.26 E-value=45 Score=24.02 Aligned_cols=46 Identities=4% Similarity=0.012 Sum_probs=30.7
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 82 YNEMMTLYM---SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 82 ~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
+-.+|+++. +-.+++.|+-++-+|.+.| .|....-..++-+.-..|
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 344555554 4468888888888888888 776666666666655555
No 305
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=60.24 E-value=45 Score=23.97 Aligned_cols=46 Identities=7% Similarity=-0.047 Sum_probs=30.1
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 83 NEMMTLYM---SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 83 ~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
-.+|+++. +-.+++.|+-++-+|++.|..|....-..++-+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34455544 44678888888888888887776666665555554444
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.11 E-value=38 Score=23.13 Aligned_cols=68 Identities=9% Similarity=0.127 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC--HHHHHHHHHHHhhcCCCCCCH
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN--IDQVKKFLDEMSCDSGGSDDW 150 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 150 (295)
..+.++.-|...|+.++|.+.++++..... -...+...+..++-+.++ .+.+..++..+... ++-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~-~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCcCHH
Confidence 456788889999999999999999853211 123344445555555332 45567777777765 444333
No 307
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=59.84 E-value=42 Score=23.58 Aligned_cols=172 Identities=9% Similarity=-0.048 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 022531 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 121 (295)
Q Consensus 42 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 121 (295)
++...-...+.++.+.+.. .+...+.++... ++..+-...+.++.+.+..+ +...+.++.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCh-hHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4555555555555555553 233333333332 35555566666666666543 3344444444 25666666667
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCC
Q 022531 122 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 201 (295)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 201 (295)
.++.+.++.+ +...+..+.. .++..+-...+.++++.+..+ +.. .+..+. ..++...-...+.++.+.|.
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~-~L~~~l---~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVE-PLIKAL---KDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHTCGG-GHH-HHHHHT---TCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCHH-HHH-HHHHHH---cCCCHHHHHHHHHHHHHhCc
Confidence 7777777654 3333444443 256666666777777776543 333 233222 23455555556666666665
Q ss_pred HHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcC
Q 022531 202 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLG 235 (295)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 235 (295)
. ++...+..+... ++...-...+.++.+.+
T Consensus 168 ~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 168 E-RVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp H-HHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred h-hHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 3 455555555442 34444444555554443
No 308
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=59.74 E-value=28 Score=23.44 Aligned_cols=34 Identities=9% Similarity=-0.071 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 95 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
.-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4455555555555544444444333344444443
No 309
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=58.82 E-value=63 Score=25.22 Aligned_cols=70 Identities=14% Similarity=0.017 Sum_probs=32.5
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHccCCHH-HHHHHHHHHh----hcCC-CCCCHHHHHHHHHHHHhcCchhhHHH
Q 022531 102 VEEIKRKNVVPDIFTYNLWISSCAATLNID-QVKKFLDEMS----CDSG-GSDDWVKYVNLVNIYITASHLVNAES 171 (295)
Q Consensus 102 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~-~a~~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (295)
.+-..+.+++++......++..+.....-+ .-.++++++. +.++ ..-++.....+...|.+.|++.+|+.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 333444555666555555555554422111 1122222222 2111 12344555666666777776666665
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=58.55 E-value=48 Score=23.79 Aligned_cols=208 Identities=9% Similarity=-0.014 Sum_probs=93.0
Q ss_pred HHccCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHh---HHHHHHHHHccC
Q 022531 54 YAGAKWTEKAEELFERVKQSNLSFNAL--MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT---YNLWISSCAATL 128 (295)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~ 128 (295)
.++.|+++....+++ .|..++.. .-.+.+...+..|+.+-+..+ .+.|..++... -.+.+...+..|
T Consensus 16 A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 16 ATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYY----ISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHH----HHcCCcchhhcCCcCCChhHHHHHcC
Confidence 456788766655554 44333221 122345566677776554444 44443332111 112344445567
Q ss_pred CHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCcc---ccHHHHHHHHHhcCCH
Q 022531 129 NIDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW---ITYDFLIILYAGLGNK 202 (295)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~ 202 (295)
+.+-+..+++ . |..++ .... ..+...+..|+.+-+.. +.+.+..++. .-.+.+..+.. .+..
T Consensus 88 ~~~~v~~Ll~----~-g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~-----Ll~~~~~~~~~~~~g~t~l~~a~~-~~~~ 155 (240)
T 3eu9_A 88 HLSMVVQLMK----Y-GADPSLIDGEGC-SCIHLAAQFGHTSIVAY-----LIAKGQDVDMMDQNGMTPLMWAAY-RTHS 155 (240)
T ss_dssp CHHHHHHHHH----T-TCCTTCCCTTSC-CHHHHHHHTTCHHHHHH-----HHHTTCCTTCCCTTSCCHHHHHHH-HCCS
T ss_pred CHHHHHHHHH----c-CCCCcccCCCCC-CHHHHHHHcCHHHHHHH-----HHhcCCCccccCCCCCcHHHHHHH-hCCh
Confidence 7665544443 2 22222 1111 23344456677654444 4444544432 22234444433 3333
Q ss_pred HHHHHHHHHHHhccCCCCHHh---HHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 022531 203 DKIDQIWKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 279 (295)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 279 (295)
....++ +.+.|..++... -...+...+..|+.+-+..+++.-.. ....+..-. .-+....+.|+.+-+..+
T Consensus 156 ~~~~~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~-t~l~~A~~~~~~~~v~~L 229 (240)
T 3eu9_A 156 VDPTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN--VDAQNIKGE-SALDLAKQRKNVWMINHL 229 (240)
T ss_dssp STTHHH---HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC--TTCBCTTSC-BHHHHHHHTTCHHHHHHH
T ss_pred HHHHHH---HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCC-CHHHHHHHcCcHHHHHHH
Confidence 333333 334444444322 11345556677887765555543111 111122212 234555777887776666
Q ss_pred HHHHHhcC
Q 022531 280 HMLLLQKN 287 (295)
Q Consensus 280 ~~~m~~~g 287 (295)
++...+.|
T Consensus 230 ~~~~~~~~ 237 (240)
T 3eu9_A 230 QEARQAKG 237 (240)
T ss_dssp HHHC----
T ss_pred HHhhhccC
Confidence 66554444
No 311
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.55 E-value=41 Score=23.01 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH
Q 022531 98 VALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW 150 (295)
Q Consensus 98 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (295)
+..+|..|...|+--. ..-|......+...|++.+|.++|+.-.+. +-.|-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 6778888888776443 444666777777888888888888887765 555544
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=57.43 E-value=38 Score=22.75 Aligned_cols=37 Identities=5% Similarity=-0.172 Sum_probs=15.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 92 VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
.+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3334444555555544443334334333334443333
No 313
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=56.95 E-value=28 Score=27.53 Aligned_cols=62 Identities=6% Similarity=-0.017 Sum_probs=37.4
Q ss_pred HHHHHHHHHhccChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccC-cHHHHHHHHHHHHhCCC
Q 022531 14 YATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAK-WTEKAEELFERVKQSNL 75 (295)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~ 75 (295)
...++.=|...|+.++|...++++..... ...+...+..++-+.. .-+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 45677888888999999999988865211 2233333333333222 23456667777776664
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.07 E-value=1.3e+02 Score=27.87 Aligned_cols=131 Identities=10% Similarity=-0.050 Sum_probs=71.9
Q ss_pred HHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 96 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 96 (295)
++..|...|..+-|.++...++. +...-..+..+|...|++++|..+|++.- .|+..+...... ..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~---t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~ 881 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LR 881 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS---SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hh
Confidence 56666677777777766655553 33333456777778888888888887643 222211110000 00
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHhcC
Q 022531 97 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW----VKYVNLVNIYITAS 164 (295)
Q Consensus 97 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 164 (295)
....++..... ......-|..++..+-+.+.++.+.++-+..... -...+. ..|+.+.++.+..|
T Consensus 882 ~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~-~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 882 EFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS-KETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccCCccchHHHHHHHHHHHhhCC
Confidence 11111111110 1112335777888888889998888887777754 112233 35666676666544
No 315
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=55.99 E-value=29 Score=20.43 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=12.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 022531 133 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 164 (295)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (295)
+.++++.+.+. +...+..|..-.+..+.+.|
T Consensus 36 ~~el~~~l~~~-~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 36 AEDLYKRLIDM-GEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCC
Confidence 44444444333 22233334334444444444
No 316
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=55.83 E-value=50 Score=23.78 Aligned_cols=47 Identities=9% Similarity=0.011 Sum_probs=22.5
Q ss_pred HHHHHHhccChhHHHHHHhhcccC-CCCHHHHHHHHHHHHccCcHHHHH
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAE 64 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~ 64 (295)
.+...+..|+.+.+..+++.-... ..+..-++.|..+ +..|+.+-+.
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~ 61 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEA-AENNHLEAVK 61 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHH-HHhCCHHHHH
Confidence 455556677777666666542221 1233333333333 3456654333
No 317
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=55.04 E-value=73 Score=24.79 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCc--HHHHHHHHHHHHhCCCCCCHHH
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW--TEKAEELFERVKQSNLSFNALM 81 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 81 (295)
....+|.-|...|+.++|...++++....-.......++..-...++ -+.+-.++..+.. ++-+....
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i 74 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDV 74 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 35678899999999999999999987532233333444443333333 2335556666654 43333333
No 318
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.85 E-value=52 Score=23.08 Aligned_cols=169 Identities=7% Similarity=-0.056 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 022531 78 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 157 (295)
Q Consensus 78 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 157 (295)
|..+-...+.++.+.+..+ +...+.++.. .++...-...+.++.+.+..+ +...+..+.. .++..+-...+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~ 97 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK----DEDGWVRQSAA 97 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc----CCCHHHHHHHH
Confidence 4555555555555555533 3333334443 256666666667777777654 3344444443 25677777788
Q ss_pred HHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCCh
Q 022531 158 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 237 (295)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 237 (295)
.++.+.+..+.... +..+. ..++...-...+.+..+.+..+ +...+..+.. .++...-...+.++.+.|+.
T Consensus 98 ~aL~~~~~~~~~~~--L~~~l---~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 98 VALGQIGDERAVEP--LIKAL---KDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHHHHHCCGGGHHH--HHHHT---TCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHhCcHHHHHH--HHHHH---cCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 88888877543333 22222 3445555556666777777643 4444444443 35666666677777777764
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHc
Q 022531 238 KEVGEIIDQWKQSATSDFDISACNRLLGAFSD 269 (295)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (295)
++...+..+..+ ++..+-...+.++.+
T Consensus 169 -~~~~~L~~~l~d----~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 169 -RVRAAMEKLAET----GTGFARKVAVNYLET 195 (201)
T ss_dssp -HHHHHHHHHHHH----CCHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence 456666666553 333333334444443
No 319
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.57 E-value=1.4e+02 Score=27.63 Aligned_cols=48 Identities=10% Similarity=-0.164 Sum_probs=31.1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH----HhHHHHHHHHHhcC
Q 022531 188 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS----RNYICILSSYLMLG 235 (295)
Q Consensus 188 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~ 235 (295)
-|..++..+-+.+.++-+.++-+...+.--.-+. ..++.++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5677888888888888888888776653211122 24666777666544
No 320
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=52.97 E-value=63 Score=23.47 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=39.9
Q ss_pred HHHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC-----HHHHHHHHHHHhhc
Q 022531 80 LMYNEMMTLYM---SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN-----IDQVKKFLDEMSCD 143 (295)
Q Consensus 80 ~~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~ 143 (295)
..+-.+|+++. +-.+++.|+-++-+|.+.|..|....-..++-+.-..|. ...|...++....-
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i 104 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRV 104 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Confidence 34455666654 447888888888888888887776666666666655543 23344444444444
No 321
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.84 E-value=55 Score=22.73 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH
Q 022531 98 VALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW 150 (295)
Q Consensus 98 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (295)
+..+|..|...|+--. ..-|......+...|++.+|.++|..-... +-.|..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHH
Confidence 4445555555554322 233444445555556666666666655554 344433
No 322
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=52.76 E-value=30 Score=21.42 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHH
Q 022531 94 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV 133 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 133 (295)
..++|.++++.+...|. .+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHH
Confidence 45555555555555432 3455555555544444433
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=52.43 E-value=55 Score=22.63 Aligned_cols=51 Identities=6% Similarity=-0.031 Sum_probs=29.2
Q ss_pred cCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 022531 57 AKWTEKAEELFERVKQSNLSF--NALMYNEMMT-L-----YMSVGQVEKVALVVEEIKR 107 (295)
Q Consensus 57 ~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~m~~ 107 (295)
.|++-+|.++|+..=...-.+ ....|..||. . ..+.|++..|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 367777777777665543333 3445555555 1 3345666666666666543
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=52.21 E-value=1e+02 Score=25.69 Aligned_cols=107 Identities=7% Similarity=-0.048 Sum_probs=51.9
Q ss_pred cChhHHHHHHhhcccCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022531 25 FGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 103 (295)
Q Consensus 25 ~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 103 (295)
++.+-|.++-.+.-- | -...|..-...+...|++++|-++--.-.. |+-.+..|.+.+-..=...|+..--+.+|.
T Consensus 343 ~n~~lA~~lA~R~~L--pGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRMAVRNNL--AGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHHHHHTTC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 455555555444332 2 222344445566667777777766554443 233355555554444444455555566666
Q ss_pred HHHhCCCCCChHhHHHHHHHHHccCCHHHHHH
Q 022531 104 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 135 (295)
Q Consensus 104 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 135 (295)
.+.+.|- .+..-=--+++.-...|+.+-..+
T Consensus 420 ~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llek 450 (494)
T 1bpo_A 420 ILLDQGQ-LNKYESLELCRPVLQQGRKQLLEK 450 (494)
T ss_dssp HHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhccCc-cchHHhhHHhHHHHhccHHHHHHH
Confidence 6655542 233222223444444454443333
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=52.08 E-value=1e+02 Score=25.68 Aligned_cols=112 Identities=12% Similarity=0.025 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHH
Q 022531 128 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQ 207 (295)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 207 (295)
.+.+-|.++..+ .|.+--...|..-.+.+...|++++|.+ +.... ..+.-.+..|.+.+-..-...|...-.+.
T Consensus 343 ~n~~lA~~lA~R----~~LpGAd~L~~~~F~~l~~~g~y~~AA~-~aA~s-P~giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 343 QNPDLALRMAVR----NNLAGAEELFARKFNALFAQGNYSEAAK-VAANA-PKGILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp CCHHHHHHHHHH----TTCSSCHHHHHHHHHHHHHTTCHHHHHH-HHHHS-GGGSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred CCHHHHHHHHHh----cCCccHHHHHHHHHHHHHHcCCHHHHHH-HHHhC-ccccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 455555544322 2555555566666677777788877777 32221 22333344444444433334566666777
Q ss_pred HHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 022531 208 IWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 246 (295)
Q Consensus 208 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (295)
+|..+.+.| +.|..--..+++.-...|+.+...+.+.+
T Consensus 417 YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 417 YFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 777777776 55654444567777777776665555443
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.40 E-value=45 Score=22.10 Aligned_cols=34 Identities=9% Similarity=-0.047 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHcc
Q 022531 94 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT 127 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 127 (295)
..-.|.++++.+.+.+...+..|..--++.+...
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 3444555555554444333444433333333333
No 327
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=51.14 E-value=30 Score=19.21 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=20.4
Q ss_pred HccCChHHHHHHHHHHHhcCCCCCC
Q 022531 268 SDVGLTEKANEFHMLLLQKNCAPTN 292 (295)
Q Consensus 268 ~~~g~~~~a~~~~~~m~~~g~~p~~ 292 (295)
...|+++.|...+-+|...+..|++
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 4567899999998888888888875
No 328
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=51.00 E-value=7.7 Score=25.38 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHhcCCCC
Q 022531 236 HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD---VGLTEKANEFHMLLLQKNCAP 290 (295)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p 290 (295)
.+++|.+.+..|++..+..-.+..||..+..+.. .++. .++|..++..++.|
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lgL 96 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 96 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCCS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcCC
Confidence 4556666666665543322345556666665542 2222 45566666655544
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.88 E-value=71 Score=23.47 Aligned_cols=54 Identities=2% Similarity=-0.028 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCH
Q 022531 96 EKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW 150 (295)
Q Consensus 96 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (295)
+.+..+|..|...||--. ..-|......+...|++.+|..+|+.-.+. +-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 456678888888776443 444666777777888888888888887765 555544
No 330
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=50.61 E-value=88 Score=24.47 Aligned_cols=219 Identities=10% Similarity=0.005 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHH
Q 022531 42 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM--YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 119 (295)
Q Consensus 42 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 119 (295)
.|..-++.|..+. ..|+.+.+..+++ .|..++... -.+.+...+..|+.+-+.-++ +.|..++...-.+
T Consensus 16 ~d~~g~t~L~~Aa-~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKIHVAA-RKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLA----SVGEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHHHHHHH-HHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHH----HHCCCCCCBTTBC
T ss_pred cCCCCCCHHHHHH-HcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHH----HCCCCccccCCCC
Confidence 4666666665554 5677666555554 454343221 123444555667765544443 3343333322222
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCH--------------------HHHHHHHHHHHhcC--chhhHHHHHHHHH
Q 022531 120 WISSCAATLNIDQVKKFLDEMSCDSGGSDDW--------------------VKYVNLVNIYITAS--HLVNAESSTLVEA 177 (295)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 177 (295)
.+...+..|+.+-+..+++..... +..++. .-. +.+...+..| +.+-+.. +
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~~~v~~-----L 159 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKER-GQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKI-----L 159 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-TCCHHHHHTCCCCCCEEEETTEEEEESCC-CHHHHHHHSCGGGHHHHHH-----H
T ss_pred HHHHHHHcCCHHHHHHHHHhcccc-CCCHHHHHhhcchHhhhhhccccCCCCCC-CHHHHHHHcCCchHHHHHH-----H
Confidence 344445678887777777765554 444433 112 3344445566 4543333 3
Q ss_pred HHhcCCCccc---cHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCCCCHHh--HHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 178 EKSITQRQWI---TYDFLIILYAGLGNKDKIDQIWKSLRM-TKQKMTSRN--YICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 178 ~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
.+.+..++.. -++.|. ..+..|+.+-+..+++.-.. .+..++... -...+...+..|+.+-+.-+++ .|
T Consensus 160 l~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g 234 (364)
T 3ljn_A 160 VQLGASPTAKDKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE----MG 234 (364)
T ss_dssp HHHTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT----TT
T ss_pred HHcCCCCcccCCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH----cC
Confidence 3445554432 233343 33566776555444443211 011122211 1123444556777665444433 33
Q ss_pred C--CCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 022531 252 T--SDFDISACNRLLGAFSDVGLTEKANEFHML 282 (295)
Q Consensus 252 ~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (295)
. ...|..-.+.| ...+..|+.+-+..+++.
T Consensus 235 ad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 235 IDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 2 11222223333 334555776665555543
No 331
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=50.41 E-value=1.5e+02 Score=27.16 Aligned_cols=162 Identities=9% Similarity=-0.029 Sum_probs=90.2
Q ss_pred HHHHHHHHHHccCc---HHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHH
Q 022531 46 TYTALLHLYAGAKW---TEKAEELFERVKQSN----LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN 118 (295)
Q Consensus 46 ~~~~li~~~~~~~~---~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 118 (295)
.-..++...|+.|. .+.|.+.|+.....+ ++||.. ..+...-.+.|..++-..++++.... .+..--.
T Consensus 688 lr~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~ 762 (909)
T 4fke_A 688 SEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEAD 762 (909)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHH
Confidence 33445555566554 567888888776532 455533 23333344567777666777777664 2344456
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHhc---CCCccccHHHHHH
Q 022531 119 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA-SHLVNAESSTLVEAEKSI---TQRQWITYDFLII 194 (295)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~ 194 (295)
.++.+++...+.+...++++.......+++. ... .++.+.... ...+.|.+ ++..-.+.. ...+...+..++.
T Consensus 763 ~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~-~~~~~v~~n~~g~~~~~~-f~~~n~~~l~~~~~~~~~~~~~~i~ 839 (909)
T 4fke_A 763 KLRSALACSNEVWLLNRYLGYTLNPDLIRKQ-DAT-STINSIASNVIGQPLAWD-FVQSNWKKLFQDYGGGSFSFSNLIQ 839 (909)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHH-HHHHHHHHSTTHHHHHHH-HHHHHCTTTTTSSSSCCCCHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHH-HHHHHHhcChHHHHHHHH-HHHHHHHHHHHHhCCCchHHHHHHH
Confidence 6788888888888888888877654223332 222 233333332 23445555 444432222 2234456778887
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 022531 195 LYAGLGNKDKIDQIWKSLRMT 215 (295)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~ 215 (295)
.....-..++-.+-++...+.
T Consensus 840 ~~~~~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 840 GVTRRFSSEFELQQLEQFKKN 860 (909)
T ss_dssp HHHTTCCSHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHhh
Confidence 776655544444444554443
No 332
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.41 E-value=36 Score=22.11 Aligned_cols=41 Identities=5% Similarity=-0.074 Sum_probs=19.4
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 102 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 102 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
|+.+....+.|+...--.-+..+...++++.|.++...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444433323333334555666666666555554
No 333
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=48.22 E-value=59 Score=21.76 Aligned_cols=21 Identities=5% Similarity=-0.048 Sum_probs=13.4
Q ss_pred HHHHHHHhccChhHHHHHHhh
Q 022531 16 TRIDLMTKVFGIHSGERYFEG 36 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~ 36 (295)
..+...++.|+.+....+++.
T Consensus 10 ~~l~~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 10 RQLLEAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHHHHHTCHHHHHHHCCT
T ss_pred HHHHHHHHhCCHHHHHHHHHc
Confidence 344455667777777777664
No 334
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=47.10 E-value=17 Score=20.27 Aligned_cols=15 Identities=0% Similarity=0.160 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHhhc
Q 022531 129 NIDQVKKFLDEMSCD 143 (295)
Q Consensus 129 ~~~~a~~~~~~~~~~ 143 (295)
+++.|...|.++...
T Consensus 35 d~~~A~~~F~~l~~~ 49 (59)
T 1oai_A 35 DYTRSAQAFTHLKAK 49 (59)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 444444444444443
No 335
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=46.54 E-value=63 Score=21.61 Aligned_cols=111 Identities=10% Similarity=-0.032 Sum_probs=48.0
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCcccc---HHHHHHHHHh
Q 022531 122 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT---YDFLIILYAG 198 (295)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~ 198 (295)
...++.|+.+....+++.-... ....+..-. +.+...+..|+.+-+.. +.+.+..++... ++.|. ..+.
T Consensus 13 ~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~-t~L~~A~~~~~~~~v~~-----Ll~~g~~~~~~~~~g~t~L~-~A~~ 84 (165)
T 3twr_A 13 LEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS-TPLHFAAGYNRVSVVEY-----LLQHGADVHAKDKGGLVPLH-NACS 84 (165)
T ss_dssp HHHHHHTCHHHHHHHCCTTTTT-CCCTTTTCC-CHHHHHHHTTCHHHHHH-----HHHTTCCTTCCCTTSCCHHH-HHHH
T ss_pred HHHHHhCCHHHHHHHHHcCCCC-ccccccCCC-CHHHHHHHcChHHHHHH-----HHhcCCCCCccCCCCCCHHH-HHHH
Confidence 3445667776665554331111 111111111 33444456666554433 444454443322 22332 3345
Q ss_pred cCCHHHHHHHHHHHHhccCCCCHHhHH--HHHHHHHhcCChHHHHHHH
Q 022531 199 LGNKDKIDQIWKSLRMTKQKMTSRNYI--CILSSYLMLGHLKEVGEII 244 (295)
Q Consensus 199 ~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~A~~~~ 244 (295)
.|+.+-+ +.+.+.|..++..... ..+...+..|+.+-+..++
T Consensus 85 ~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 128 (165)
T 3twr_A 85 YGHYEVA----ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128 (165)
T ss_dssp TTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred cCcHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 5665533 3344455555432211 2344445566665544444
No 336
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=46.48 E-value=50 Score=22.36 Aligned_cols=35 Identities=6% Similarity=-0.137 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 94 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544443334444333344444433
No 337
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=46.14 E-value=1e+02 Score=23.81 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=28.6
Q ss_pred HHHHHHHHhccChhHHHHHHhhcccC-CCCHH-HHHHHHHHHHccCcHHHHHHHH
Q 022531 15 ATRIDLMTKVFGIHSGERYFEGLPLS-AKTSE-TYTALLHLYAGAKWTEKAEELF 67 (295)
Q Consensus 15 ~~li~~~~~~~~~~~A~~~~~~~~~~-~p~~~-~~~~li~~~~~~~~~~~a~~~~ 67 (295)
+..+...++.|+++.+..+++.=..- .++.. -++.|..+ +..|+.+-+.-++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A-~~~g~~~iv~~Ll 79 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA-VQMSREDIVELLL 79 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH-HHTTCHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH-HHcCCHHHHHHHH
Confidence 44556667899999998888753221 11211 23334333 4567765444443
No 338
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=45.99 E-value=62 Score=21.37 Aligned_cols=62 Identities=6% Similarity=0.055 Sum_probs=39.1
Q ss_pred HHHhCCCCCChHhHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 104 EIKRKNVVPDIFTYNLWISSCAATL-NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 104 ~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+. +...+..|..--++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCcEE
Confidence 3566777766443 33555565555 566788888888776 54556666666666676666554
No 339
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.55 E-value=66 Score=21.58 Aligned_cols=62 Identities=5% Similarity=0.020 Sum_probs=39.1
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 103 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
+.+.+.|++++..- ..++..+...+ .-.|.++++.+.+. +...+..|..--++.+...|-+.
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCcEE
Confidence 45666777766543 33445555555 56788888888776 55556666666667677666543
No 340
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=44.65 E-value=71 Score=22.99 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=21.9
Q ss_pred hhHHHHHHhhcccCCCCHH------HHHHHHHHHHccCcHHHHHHHHHHHH
Q 022531 27 IHSGERYFEGLPLSAKTSE------TYTALLHLYAGAKWTEKAEELFERVK 71 (295)
Q Consensus 27 ~~~A~~~~~~~~~~~p~~~------~~~~li~~~~~~~~~~~a~~~~~~m~ 71 (295)
++.|+.+|+.+....++.. .--..+..|.+.|.+++|.++|++..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 4456666666655433111 11122334555666666666665543
No 341
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.17 E-value=72 Score=21.56 Aligned_cols=63 Identities=6% Similarity=0.013 Sum_probs=41.5
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 103 EEIKRKNVVPDIFTYNLWISSCAATL-NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 103 ~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
+.|.+.|++++..-. .++..+...+ .+-.|.++++.+.+. +...+..|..--++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCcEE
Confidence 446677877665433 3555555555 566788888888876 55566666666677777777554
No 342
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=43.81 E-value=67 Score=21.15 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=8.0
Q ss_pred HHHHhcCChHHHHHHHH
Q 022531 229 SSYLMLGHLKEVGEIID 245 (295)
Q Consensus 229 ~~~~~~~~~~~A~~~~~ 245 (295)
...+..|+.+-+.-+++
T Consensus 106 ~~A~~~~~~~~v~~Ll~ 122 (156)
T 1bd8_A 106 HLAVQEGHTAVVSFLAA 122 (156)
T ss_dssp HHHHHHTCHHHHHHHHT
T ss_pred HHHHHhChHHHHHHHHh
Confidence 33345556554444443
No 343
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=43.41 E-value=43 Score=24.46 Aligned_cols=44 Identities=9% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCc
Q 022531 16 TRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW 59 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 59 (295)
..+-.|.+.|.+++|.++|++.-...++..-...-+....+..+
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
No 344
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=43.31 E-value=80 Score=21.86 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=14.9
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHh
Q 022531 48 TALLHLYAGAKWTEKAEELFERVKQ 72 (295)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~ 72 (295)
..++.-|...++.++|...++++..
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 4455555566666666666666553
No 345
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=42.46 E-value=97 Score=22.62 Aligned_cols=54 Identities=9% Similarity=-0.029 Sum_probs=28.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------HhHHHHHHHHHc--cCCHHHHHHHHHH
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRKNVVPDI-------FTYNLWISSCAA--TLNIDQVKKFLDE 139 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~--~~~~~~a~~~~~~ 139 (295)
+...++.|+.+.+..+++.+.+.|..++. .-.+.|..++.. .|+.+-+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc
Confidence 44455667777666666666665544332 233444433322 2666655555544
No 346
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=42.45 E-value=1.3e+02 Score=24.17 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=26.2
Q ss_pred HHHHHHhccChhHHHHHHhhcccC-CCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 022531 17 RIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFE 68 (295)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~ 68 (295)
.+...+..|+.+-+..+++.-... ..+..-.+. +...++.|+.+-+.-+++
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~ 101 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGHTNMVKLLLE 101 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHHHh
Confidence 455566778888777777653221 122222233 333345666655444444
No 347
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=42.04 E-value=77 Score=21.33 Aligned_cols=148 Identities=13% Similarity=0.005 Sum_probs=70.9
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccc---cHHHHHHHHHh
Q 022531 122 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI---TYDFLIILYAG 198 (295)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~~~~ 198 (295)
...+..|+.+....+++.-... ....+..-++ .+...+..|+.+-+.. +.+.+..++.. -.+.| ...+.
T Consensus 7 ~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t-~L~~A~~~~~~~~v~~-----Ll~~g~~~~~~~~~g~t~L-~~A~~ 78 (172)
T 3v30_A 7 HQLAAQGELDQLKEHLRKGDNL-VNKPDERGFT-PLIWASAFGEIETVRF-----LLEWGADPHILAKERESAL-SLAST 78 (172)
T ss_dssp HHHHHTTCHHHHHHHHTTCSGG-GGCCCTTSCC-HHHHHHHTTCHHHHHH-----HHHHTCCTTCCCTTCCCHH-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCccc-ccCCCCCCCC-HHHHHHHcCCHHHHHH-----HHHcCCCchhhcccCCCHH-HHHHH
Confidence 3456778887776666542211 0112222233 3444556777765544 44445544432 22233 33456
Q ss_pred cCCHHHHHHHHHHHHhccCCCCHHhH--HHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHH
Q 022531 199 LGNKDKIDQIWKSLRMTKQKMTSRNY--ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 276 (295)
Q Consensus 199 ~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 276 (295)
.|+.+-+ +.+.+.|..++.... ...+...+..|+.+-+..+++.-.. ....|..-.+ -+...+..|+.+-+
T Consensus 79 ~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~g~t-~l~~A~~~~~~~~~ 151 (172)
T 3v30_A 79 GGYTDIV----GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD--LTTEADSGYT-PMDLAVALGYRKVQ 151 (172)
T ss_dssp TTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCC-HHHHHHHHTCHHHH
T ss_pred CCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCCC-HHHHHHHhCcHHHH
Confidence 6765544 444456665554321 1244455566887665555443111 1112222222 34445566777666
Q ss_pred HHHHHHHH
Q 022531 277 NEFHMLLL 284 (295)
Q Consensus 277 ~~~~~~m~ 284 (295)
.-+++...
T Consensus 152 ~~L~~~~~ 159 (172)
T 3v30_A 152 QVIENHIL 159 (172)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
No 348
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=41.93 E-value=1.3e+02 Score=24.01 Aligned_cols=67 Identities=12% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCC
Q 022531 46 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ--VEKVALVVEEIKRKNVVPD 113 (295)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 113 (295)
...+++.-|...|++++|.+.++++..... -.......++......++ .+.+..++..+...|+-+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~-~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~ 82 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKH-FLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATS 82 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGG-GHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchh-hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCH
Confidence 567888999999999999999999864310 012333334444444443 3556677777777665433
No 349
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.78 E-value=99 Score=22.61 Aligned_cols=162 Identities=13% Similarity=-0.050 Sum_probs=77.7
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCCCHH-------HHHHHHHHHH--hcCchhhHHHHHHHHHHHhc----------
Q 022531 121 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWV-------KYVNLVNIYI--TASHLVNAESSTLVEAEKSI---------- 181 (295)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~---------- 181 (295)
+...++.|+.+....+++.+... +..++.. -.+.|..+.. +.|+.+-+.. +++.-....
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~-Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI-LLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHH-HHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHH-HHHhcccccchHhhhcccc
Confidence 33445678888877777766654 3333322 2234443332 5677776666 444332211
Q ss_pred CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHh----------------HHHHHHHHHhcCChHHHHHHHH
Q 022531 182 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN----------------YICILSSYLMLGHLKEVGEIID 245 (295)
Q Consensus 182 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----------------~~~li~~~~~~~~~~~A~~~~~ 245 (295)
...|..-++.|. ..+..|+.+-+. .+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 87 ~~~d~~g~t~L~-~A~~~g~~~~v~----~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 87 RDVYYRGQTALH-IAIERRCKHYVE----LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CCSSEESBCHHH-HHHHTTCHHHHH----HHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCCCHHH-HHHHcCCHHHHH----HHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 111112233343 335667766444 4444566655432 1234555566788766555554
Q ss_pred HHhhhcC--CCCCHHHHHHHHHHHHccCC----hHHHHHHHHHHHhcCCCC
Q 022531 246 QWKQSAT--SDFDISACNRLLGAFSDVGL----TEKANEFHMLLLQKNCAP 290 (295)
Q Consensus 246 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~~~g~~p 290 (295)
... .+. ...|..-++.|..++..... .+...++++.+++.|..+
T Consensus 162 ~~~-~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 162 NGH-KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp CSS-CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 100 111 12233334455555433222 222346666666666555
No 350
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.28 E-value=39 Score=22.22 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=19.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 87 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
..+...+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333333444455555555555444444444333444444444
No 351
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=41.07 E-value=1.3e+02 Score=23.67 Aligned_cols=26 Identities=12% Similarity=0.345 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022531 81 MYNEMMTLYMSVGQVEKVALVVEEIK 106 (295)
Q Consensus 81 ~~~~li~~~~~~~~~~~a~~~~~~m~ 106 (295)
....++.-|...|+.++|...++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35677888888899998888888875
No 352
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=41.03 E-value=2.2e+02 Score=26.20 Aligned_cols=158 Identities=9% Similarity=-0.083 Sum_probs=84.8
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHHhCC----CCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 022531 84 EMMTLYMSVGQ---VEKVALVVEEIKRKN----VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 156 (295)
Q Consensus 84 ~li~~~~~~~~---~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 156 (295)
.++...|..|. .++|.+.|++....+ +.||.. ..+...-.+.|..++-..+++..... .+..--..+
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~----~~~~ek~~l 764 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA----QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC----CSHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc----CCHHHHHHH
Confidence 34555566665 457888888876542 556543 33333345667766666677777664 234444578
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhc-CCHHHHHHHHHHH---HhccCCCCHHhHHHHHHHHH
Q 022531 157 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL-GNKDKIDQIWKSL---RMTKQKMTSRNYICILSSYL 232 (295)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m---~~~~~~~~~~~~~~li~~~~ 232 (295)
+.+++...+.+...+ ++.........+..-.. .++.+...+ -..+.+.+++.+= .......+...+..++....
T Consensus 765 l~aL~~~~d~~~l~~-~L~~~l~~~~ir~qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNR-YLGYTLNPDLIRKQDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHH-HHHHTTCTTTSCGGGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHH-HHHHHhCCCCCchhhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888887888777777 66655443211122222 333333332 2234455554331 11122334446777888777
Q ss_pred hcCChHHHHHHHHHHhh
Q 022531 233 MLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 233 ~~~~~~~A~~~~~~~~~ 249 (295)
..-.-++-.+-++.+.+
T Consensus 843 ~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKK 859 (909)
T ss_dssp TTCCSHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHh
Confidence 65544444455555544
No 353
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=40.63 E-value=95 Score=21.96 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=60.7
Q ss_pred HHhccChhHHHHHHhhcccCCCCHHHHHHHHH-HHHccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 022531 21 MTKVFGIHSGERYFEGLPLSAKTSETYTALLH-LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 99 (295)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 99 (295)
+.+-.+++.+.-+-.-+. |...-|..|+. .+--.|.+.+++-++... + ..+..-|.. -+|-+.+++..|+
T Consensus 12 s~kY~dYdt~~fLsa~L~---~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l---N-T~Ts~YYk~--LCy~klKdYkkA~ 82 (242)
T 3kae_A 12 SIRYRDYETAIFLAACLL---PCKPEYRMLMSIVLYLNGEYTRALFHLHKL---N-TCTSKYYES--LCYKKKKDYKKAI 82 (242)
T ss_dssp HHHTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHHTC---C-BHHHHHHHH--HHHHHTTCHHHHH
T ss_pred HhhcccccHHHHHHHHHc---cCChHHHhhhhhhhhhcchHhHHHHHHHhc---c-hHHHHHHHH--HHHHHHHHHHHHH
Confidence 344556666554433333 22223444432 334478888887766432 1 112222333 3567788999999
Q ss_pred HHHHHHHhCCCC--CCh---------------HhHHHHHHHHHccCCHHHHHHHHHHHh
Q 022531 100 LVVEEIKRKNVV--PDI---------------FTYNLWISSCAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 100 ~~~~~m~~~~~~--p~~---------------~~~~~li~~~~~~~~~~~a~~~~~~~~ 141 (295)
..++.+....+. ||. .-|+.+...|...|+.++|+..+..--
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 999999865544 221 234445555666666666666665433
No 354
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=40.43 E-value=1.7e+02 Score=24.83 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=22.3
Q ss_pred ccccHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 022531 185 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 220 (295)
Q Consensus 185 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 220 (295)
+......|-.-|.+.|++-+|-+++..+-..+..++
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~i~ 251 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATSNFDIT 251 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSSCCC
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhCCCCCC
Confidence 334455566677777887777777777766544333
No 355
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=40.25 E-value=10 Score=25.99 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHhcCCCC
Q 022531 236 HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD---VGLTEKANEFHMLLLQKNCAP 290 (295)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p 290 (295)
.+++|.+.+..|++..+..-.+..||..+..+.. .++. .++|..++..++.|
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lgL 127 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCSS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCccc
Confidence 3445555555554433211233445555554432 2222 44555555554443
No 356
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=40.15 E-value=99 Score=22.02 Aligned_cols=155 Identities=12% Similarity=-0.015 Sum_probs=77.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCcc---ccHHHHHHHH
Q 022531 120 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW---ITYDFLIILY 196 (295)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~ 196 (295)
.+...++.|+.+....++..-... ...++..-.+ .+...+..|+.+-+.. +.+.+..++. .-++.|. ..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t-~L~~A~~~g~~~~v~~-----Ll~~g~~~~~~~~~g~t~L~-~A 80 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSL-ATRTDQDSRT-ALHWACSAGHTEIVEF-----LLQLGVPVNDKDDAGWSPLH-IA 80 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSCC-HHHHHHHHTCHHHHHH-----HHHTTCCSCCCCTTSCCHHH-HH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCCC-HHHHHHHcCcHHHHHH-----HHHhCCCCCCcCCCCCCHHH-HH
Confidence 455667889999888887764332 1122333233 3445566777665444 4455544433 2233343 33
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCCHHhH--HHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChH
Q 022531 197 AGLGNKDKIDQIWKSLRMTKQKMTSRNY--ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTE 274 (295)
Q Consensus 197 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 274 (295)
+..|+.+- ++.+.+.|..++.... ...+...+..|+.+-+..+++.-.. ....+..-.+ .+...+..|+.+
T Consensus 81 ~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t-~L~~A~~~~~~~ 153 (231)
T 3aji_A 81 ASAGXDEI----VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN--PDAKDHYDAT-AMHRAAAKGNLK 153 (231)
T ss_dssp HHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCC-HHHHHHHHTCHH
T ss_pred HHcCHHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCc-HHHHHHHcCCHH
Confidence 45666654 4444556655543221 1345555667887765555442111 1112222222 334445566655
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q 022531 275 KANEFHMLLLQKNCAPTNA 293 (295)
Q Consensus 275 ~a~~~~~~m~~~g~~p~~~ 293 (295)
- ++.+.+.|..++..
T Consensus 154 ~----v~~Ll~~g~~~~~~ 168 (231)
T 3aji_A 154 M----VHILLFYKASTNIQ 168 (231)
T ss_dssp H----HHHHHHTTCCSCCC
T ss_pred H----HHHHHhcCCCcccc
Confidence 4 44555567776643
No 357
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=39.80 E-value=90 Score=21.45 Aligned_cols=10 Identities=0% Similarity=0.388 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 022531 204 KIDQIWKSLR 213 (295)
Q Consensus 204 ~a~~~~~~m~ 213 (295)
.|.++++.+.
T Consensus 50 sA~eI~~~l~ 59 (162)
T 4ets_A 50 TPESLYMEIK 59 (162)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3333333333
No 358
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=39.78 E-value=90 Score=21.45 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh--cCCCcccc
Q 022531 130 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS--ITQRQWIT 188 (295)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~ 188 (295)
.+.+.+-+.+..+..|.+.+.. -..++..+...+..-.|.+ +++.+... ++..+..|
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~e-I~~~l~~~~~~~~is~aT 71 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPES-LYMEIKQAEPDLNVGIAT 71 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHH-HHHHHHHHCGGGCCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHH-HHHHHHhhcCCCCCCHHH
Confidence 4455555555444446666543 3455666666666666777 66666665 54444333
No 359
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=39.74 E-value=92 Score=23.56 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHccCc-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 43 TSETYTALLHLYAGAKW-TEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
+..+.+.+..++.+.|= -.+.+..|+.+.+.+ +++.-|+.|+++..
T Consensus 37 spr~l~~~~k~ve~~g~~sPe~i~~f~ALse~~--~TP~D~~~ml~avl 83 (262)
T 1d1d_A 37 EPKLITRLADTVRTKGLRSPITMAEVEALMSSP--LLPHDVTNLMRVIL 83 (262)
T ss_dssp CHHHHHHHHHHHHHHCTTSSHHHHHHHHHHTSC--CCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcCCCChHHHHHHHHHHcCC--CChHHHHHHHHHHc
Confidence 77788888888777663 467777777555433 45667777777653
No 360
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.60 E-value=86 Score=21.16 Aligned_cols=63 Identities=6% Similarity=-0.018 Sum_probs=37.5
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 103 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
+.+.+.|++++.. -..++..+...+.+-.|.++++.+.+. +...+..|..-.++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 3456677765543 334555555556666788888888765 44556666666666666666543
No 361
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.52 E-value=1.4e+02 Score=23.75 Aligned_cols=77 Identities=12% Similarity=-0.001 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCc--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW--TEKAEELFERVKQSNLSFNALMYNEMMTLYM 90 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 90 (295)
....+|.-|...++.++|...++++............+|..-...++ -+.+-.++..+.. ++-+.......+...+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle 134 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLK 134 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 44568888999999999999999987532233344444444333333 3345566666664 54444444444444433
No 362
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=39.34 E-value=62 Score=21.20 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=30.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChH
Q 022531 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK 238 (295)
Q Consensus 192 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 238 (295)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 34444455556677788888877766666777666777777666543
No 363
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=38.98 E-value=35 Score=22.80 Aligned_cols=44 Identities=14% Similarity=0.032 Sum_probs=20.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccC
Q 022531 85 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 128 (295)
Q Consensus 85 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 128 (295)
++..+...+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33344444444455555555555444444444333444444444
No 364
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=38.42 E-value=1.7e+02 Score=25.14 Aligned_cols=72 Identities=8% Similarity=-0.063 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHH
Q 022531 130 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI 205 (295)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 205 (295)
.+.......+...+-. .-+..-...++..|.+.|-.+.|.+ ++..+...... +...+ .-+..|++.|+++.+
T Consensus 497 ~~~gr~~IselLpr~P-l~Tndd~e~vL~iCa~l~L~~~ar~-I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 497 RSAKKMVIAELLPHYP-FVTNDDIEWMLSICVEWRLPEIAKE-IYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHGGGCC-CCSHHHHHHHHHHHHHHTCHHHHHH-HHHHHHC--------------------------
T ss_pred hhHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHCCChHHHHH-HHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 3344444444444311 1122334455555666666666666 55544443332 22333 223345555555443
No 365
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.71 E-value=32 Score=24.74 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=20.0
Q ss_pred HHHHHHHhccChhHHHHHHhhcccCC
Q 022531 16 TRIDLMTKVFGIHSGERYFEGLPLSA 41 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~~ 41 (295)
..+..|.+.|.+++|.++|++.-...
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCC
Confidence 35678999999999999999965543
No 366
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=37.42 E-value=57 Score=18.53 Aligned_cols=44 Identities=7% Similarity=-0.037 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHc
Q 022531 224 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 269 (295)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (295)
++.++..++...-+++++-.+++..+.|. .+...|-.-++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~--I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGT--IPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 34455555555555666666666665553 344445444444444
No 367
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=37.30 E-value=1.2e+02 Score=22.86 Aligned_cols=209 Identities=9% Similarity=-0.072 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHhhcccC------------CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCC
Q 022531 11 DSDYATRIDLMTKVFGIHSGERYFEGLPLS------------AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN 78 (295)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 78 (295)
.....+.+...+..|+.++..++....+.. ..+..-++.|. ..+..|+.+.+..+++ .|..++
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~-~Aa~~g~~~~v~~Ll~----~g~~~~ 86 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMH-EAAIHGHQLSLRNLIS----QGWAVN 86 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHH-HHHHTTCHHHHHHHHH----TTCCSC
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHH-HHHHcCCHHHHHHHHH----CCCCCC
Confidence 334456677777888887777754432221 12333334343 3456677655554444 443332
Q ss_pred H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH---hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHH-
Q 022531 79 A---LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF---TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV- 151 (295)
Q Consensus 79 ~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 151 (295)
. .-+ +.+...+..|+.+-+. .+.+.|..++.. -.+.+ ...+..|+.+-+..+++. |..++..
T Consensus 87 ~~~~~g~-t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~-----g~~~~~~~ 155 (285)
T 3d9h_A 87 IITADHV-SPLHEACLGGHLSCVK----ILLKHGAQVNGVTADWHTPL-FNACVSGSWDCVNLLLQH-----GASVQPES 155 (285)
T ss_dssp EECTTCC-CHHHHHHHTTCHHHHH----HHHHTTCCSSCCCTTCCCHH-HHHHHHTCHHHHHHHHHT-----TCCSSCSC
T ss_pred CcCCCCC-CHHHHHHHCCcHHHHH----HHHHCCCCCCCCCCCCCCHH-HHHHHcCHHHHHHHHHHC-----CCCCCCCC
Confidence 2 122 2334445667765444 344445444322 22333 333455666654444432 2222111
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCccc---cHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhH-HHH
Q 022531 152 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI---TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY-ICI 227 (295)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~l 227 (295)
.-...+...+..|+.+-+.. +.+.+..++.. -.+.| ...+..|+.+-+.. +.+.|..++.... ...
T Consensus 156 ~g~t~L~~A~~~g~~~~v~~-----Ll~~g~~~~~~d~~g~t~L-~~A~~~~~~~~v~~----Ll~~ga~~~~~~~g~t~ 225 (285)
T 3d9h_A 156 DLASPIHEAARRGHVECVNS-----LIAYGGNIDHKISHLGTPL-YLACENQQRACVKK----LLESGADVNQGKGQDSP 225 (285)
T ss_dssp TTSCHHHHHHHHTCHHHHHH-----HHHTTCCTTCCBTTTBCHH-HHHHHTTCHHHHHH----HHHTTCCTTCCBTTBCH
T ss_pred CCCCHHHHHHHcCCHHHHHH-----HHHCCCCCCCcCCCCCCHH-HHHHHcCcHHHHHH----HHHCCCCCCCCCCCCCH
Confidence 01233444556666654444 44445444322 12233 33355666654443 3445555542111 124
Q ss_pred HHHHHhcCChHHHHHHHH
Q 022531 228 LSSYLMLGHLKEVGEIID 245 (295)
Q Consensus 228 i~~~~~~~~~~~A~~~~~ 245 (295)
+...++.|+.+-+..+++
T Consensus 226 L~~A~~~~~~~~v~~Ll~ 243 (285)
T 3d9h_A 226 LHAVVRTASEELACLLMD 243 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 455566777765544443
No 368
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.48 E-value=99 Score=20.66 Aligned_cols=63 Identities=6% Similarity=0.013 Sum_probs=40.9
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchh
Q 022531 103 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 167 (295)
Q Consensus 103 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (295)
+.+.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|..-.++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 34667787766443 33555555556666788888888776 54556666666677777776554
No 369
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=35.42 E-value=94 Score=20.39 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=7.5
Q ss_pred HHhcCCHHHHHHHHHH
Q 022531 89 YMSVGQVEKVALVVEE 104 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~ 104 (295)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555554444444
No 370
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=35.41 E-value=60 Score=21.59 Aligned_cols=46 Identities=9% Similarity=0.054 Sum_probs=29.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCCh
Q 022531 192 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 237 (295)
Q Consensus 192 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 237 (295)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4444445555666777888777776666666766666666666654
No 371
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.21 E-value=95 Score=20.11 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=30.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 022531 66 LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 108 (295)
Q Consensus 66 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 108 (295)
+|+.+....+.|++..--.-+......++++.|.++..++...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5666666677655544444455567789999999999888764
No 372
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=33.60 E-value=1.8e+02 Score=23.19 Aligned_cols=73 Identities=10% Similarity=0.020 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCCC----HHHHHHHHHHHHccCc-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALLHLYAGAKW-TEKAEELFERVKQSNLSFNALMYNEMMT 87 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li~ 87 (295)
....+|.=|...|+.++|...++++.. |+ ..++..+..++-+... -+.+-.++..+...++-+.......+..
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~--p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ 91 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA--PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 91 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC--CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC--chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 567889999999999999999999975 43 3344444444433322 3456677777777665444444333333
No 373
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.26 E-value=74 Score=18.54 Aligned_cols=61 Identities=5% Similarity=-0.052 Sum_probs=33.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC
Q 022531 68 ERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 129 (295)
Q Consensus 68 ~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 129 (295)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34556666665544 33445554443 455666677777666555555555555555555553
No 374
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=32.92 E-value=1.2e+02 Score=21.03 Aligned_cols=131 Identities=8% Similarity=-0.075 Sum_probs=54.0
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHhcCCCcccc---HHHHHHHHH-hcCCHHHHHHHHHHHHhccCCCCHHhH--H-HHHH
Q 022531 157 VNIYITASHLVNAESSTLVEAEKSITQRQWIT---YDFLIILYA-GLGNKDKIDQIWKSLRMTKQKMTSRNY--I-CILS 229 (295)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~--~-~li~ 229 (295)
+...+..|+.+.-.+ +.+.+.+.|..++... ++.|..++. ...+.....++.+.+.+.|..++.... . ..+.
T Consensus 42 Lh~A~~~~~~~~~~~-iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh 120 (186)
T 3t8k_A 42 LYDVLRNNNDEARYK-ISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120 (186)
T ss_dssp HHHHTTCSCHHHHHH-HHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTG
T ss_pred HHHHHHcCCcchHHH-HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHH
Confidence 333444454444344 4444555555444321 222322221 122334445566666666665554321 0 1222
Q ss_pred HHHhcCCh-HHHHHHHHHHhh-hcCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC
Q 022531 230 SYLMLGHL-KEVGEIIDQWKQ-SATSDFDI---SACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 290 (295)
Q Consensus 230 ~~~~~~~~-~~A~~~~~~~~~-~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 290 (295)
..+..+.. ..-..+++.+.+ .|. .++. .-.+ -+....+.|..+-..-+.+.+.+.+++.
T Consensus 121 ~A~~~~~~~~~~~~iv~~Ll~~~ga-d~~~~d~~G~T-pL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 121 NIFNYFVDENEMIPLYKLIFSQSGL-QLLIKDKWGLT-ALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp GGGGCCSCHHHHHHHHHHHHTSTTC-CTTCCCTTSCC-HHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHcCCChhhHHHHHHHHHHhcCC-CCcccCCCCCC-HHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 22222222 223345555554 332 2222 1122 2333455566555444444555555544
No 375
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.75 E-value=2.4e+02 Score=24.24 Aligned_cols=74 Identities=9% Similarity=0.017 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhH
Q 022531 93 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 169 (295)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (295)
.+.....+...++..+=.--+..-..-++..|.+.|-.+.|.++++.+-.+ - .-+...| ..+..|+|+|+++..
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k-~-l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQ-M-LSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-H-HHCccHH-HHHHHHHHcCChhhc
Confidence 344555566666665422223455666788888888888888888877664 2 2233344 566677888877654
No 376
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=31.86 E-value=2.6e+02 Score=24.35 Aligned_cols=225 Identities=8% Similarity=-0.047 Sum_probs=114.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHH
Q 022531 59 WTEKAEELFERVKQSNLSFNALMYN----EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK 134 (295)
Q Consensus 59 ~~~~a~~~~~~m~~~~~~p~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 134 (295)
+.+.|...|....... ..+..... .+.......+...++...+....... ++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5677777777765432 22333222 22223333443445555666544432 23333333444455678888888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh------------cCCC-------c---ccc----
Q 022531 135 KFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS------------ITQR-------Q---WIT---- 188 (295)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~-------~---~~~---- 188 (295)
..|..|... . .......--+..++...|+.++|.. ++..+... +.++ + ...
T Consensus 306 ~~~~~l~~~-~-~~~~r~~YW~~ra~~~~g~~~~a~~-~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~ 382 (618)
T 1qsa_A 306 TWLARLPME-A-KEKDEWRYWQADLLLERGREAEAKE-ILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQG 382 (618)
T ss_dssp HHHHHSCTT-G-GGSHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHS
T ss_pred HHHHHcccc-c-cccHhHHHHHHHHHHHcCCHHHHHH-HHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccC
Confidence 888887653 1 1223333455567777888888887 66555431 1000 0 000
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcC---CCCCHHHHHHHH
Q 022531 189 -YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT---SDFDISACNRLL 264 (295)
Q Consensus 189 -~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~ 264 (295)
-..-+..+...|....|...+..+... .+......+.......|..+.+............ .-|. -|..++
T Consensus 383 ~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~--~y~~~i 457 (618)
T 1qsa_A 383 PEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPL--AYNDLF 457 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCC--TTHHHH
T ss_pred hHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCc--chHHHH
Confidence 011223455667777777777766543 2333333444555566767666554433221110 0011 245566
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCCCCCCC
Q 022531 265 GAFSDVGLTEKANEFHMLLLQKNCAPTNAS 294 (295)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 294 (295)
..+.+.-.++..+-.---..|+++.|+..|
T Consensus 458 ~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~S 487 (618)
T 1qsa_A 458 KRYTSGKEIPQSYAMAIARQESAWNPKVKS 487 (618)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHTTCTTCBC
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCCCCCcC
Confidence 666666666655444334466777777654
No 377
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.81 E-value=1.4e+02 Score=21.18 Aligned_cols=81 Identities=16% Similarity=-0.004 Sum_probs=55.9
Q ss_pred hccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCC----------------C-HHHHHHH
Q 022531 23 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF----------------N-ALMYNEM 85 (295)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----------------~-~~~~~~l 85 (295)
-.|.+..++-++..+.. -+..-|.+| +|-+..++..|+..++.+....+.. | ...|+.+
T Consensus 45 yngEY~R~Lf~L~~lNT--~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~ 120 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNT--CTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLL 120 (242)
T ss_dssp HTTCHHHHHHHHHTCCB--HHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHH
T ss_pred hcchHhHHHHHHHhcch--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHH
Confidence 46777777777655432 233333333 4557889999999999998655432 2 2356778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 022531 86 MTLYMSVGQVEKVALVVEEIKR 107 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~ 107 (295)
...+.+.|+.++|+..|..--.
T Consensus 121 a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 121 GDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHhhhHhhhhcC
Confidence 8889999999999999876443
No 378
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.75 E-value=1.2e+02 Score=22.19 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=12.8
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCC
Q 022531 197 AGLGNKDKIDQIWKSLRMTKQKMT 220 (295)
Q Consensus 197 ~~~g~~~~a~~~~~~m~~~~~~~~ 220 (295)
+..|+.+.+..+++.+.+.|..++
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcc
Confidence 455666555555555555554443
No 379
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=31.61 E-value=76 Score=23.71 Aligned_cols=84 Identities=6% Similarity=0.024 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhccC-------CCCHHhHHHHHHHHHhcC---------ChHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 022531 202 KDKIDQIWKSLRMTKQ-------KMTSRNYICILSSYLMLG---------HLKEVGEIIDQWKQSATSDFDISACNRLLG 265 (295)
Q Consensus 202 ~~~a~~~~~~m~~~~~-------~~~~~~~~~li~~~~~~~---------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 265 (295)
.+.|..++..|--..+ .-...-|..+..+|++.| +.+.-.++++...+.|..+-=...|.++|+
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 5667777777743321 123345777888888877 456677777777777765444556888887
Q ss_pred HHHccCChHHHHHHHHHHHh
Q 022531 266 AFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 266 ~~~~~g~~~~a~~~~~~m~~ 285 (295)
--.-.-+.++..+++..+++
T Consensus 250 k~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 55555678888888877654
No 380
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=31.60 E-value=2.4e+02 Score=23.94 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022531 95 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 142 (295)
+.+|+.+|++.... .+.........-|...+-++.|.++.-..-+
T Consensus 51 L~eAl~Lf~~va~~---l~l~~L~~~c~~~~~l~~y~GaVeL~L~~A~ 95 (525)
T 3i5p_A 51 LKNATALLEQIVDD---LSIEKLKEAVSMMLSVNYYPKSIEFLLNIAN 95 (525)
T ss_dssp HHHHHC-------------CHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 45566666554321 1222334456667777888888776554433
No 381
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=31.20 E-value=1.1e+02 Score=20.00 Aligned_cols=23 Identities=0% Similarity=-0.218 Sum_probs=13.8
Q ss_pred HHHHHHHhccChhHHHHHHhhcc
Q 022531 16 TRIDLMTKVFGIHSGERYFEGLP 38 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~ 38 (295)
..+...++.|+.+....+++.-.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~ 26 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGA 26 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHcCC
Confidence 34445566677777766666533
No 382
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=31.13 E-value=1.2e+02 Score=20.48 Aligned_cols=149 Identities=13% Similarity=-0.004 Sum_probs=71.2
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCcccc---HHHHHHHHHhc
Q 022531 123 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT---YDFLIILYAGL 199 (295)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~ 199 (295)
..++.|+.+.+..+++.-... -...+..-. +.+...+..|+.+-+.. +.+.+..++... .+.| ...+..
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~-t~L~~A~~~~~~~~v~~-----Ll~~g~~~~~~~~~g~t~L-~~A~~~ 82 (179)
T 3f6q_A 11 TQCREGNAVAVRLWLDNTEND-LNQGDDHGF-SPLHWACREGRSAVVEM-----LIMRGARINVMNRGDDTPL-HLAASH 82 (179)
T ss_dssp HHHHHTCHHHHHHHHHCTTSC-TTCCCTTSC-CHHHHHHHTTCHHHHHH-----HHHTTCCTTCCCTTCCCHH-HHHHHT
T ss_pred HHHHcCCHHHHHHHHhcCccc-ccccCCCCC-CHHHHHHHcCcHHHHHH-----HHHcCCCCCCcCCCCCCHH-HHHHHc
Confidence 445678887777666542221 112233223 34445566777654444 445565554322 2333 333556
Q ss_pred CCHHHHHHHHHHHHhccCCCCHHhH--HHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCH---HHHHHHHHHHHccCChH
Q 022531 200 GNKDKIDQIWKSLRMTKQKMTSRNY--ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI---SACNRLLGAFSDVGLTE 274 (295)
Q Consensus 200 g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 274 (295)
|+.+- .+.+.+.|..++.... ...+...+..|+.+-+..+++ .+. .++. .-.+.+-.+ .. .
T Consensus 83 ~~~~~----v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga-~~~~~~~~g~tpl~~A-~~----~ 148 (179)
T 3f6q_A 83 GHRDI----VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA----NGA-LVSICNKYGEMPVDKA-KA----P 148 (179)
T ss_dssp TCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC-CSSBCCTTSCCGGGGS-CH----H
T ss_pred CCHHH----HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH----CCC-CcchhccCCCCcHHHH-HH----H
Confidence 66554 4444556666554321 124455566677665444443 222 2221 111111111 11 2
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q 022531 275 KANEFHMLLLQKNCAPTNA 293 (295)
Q Consensus 275 ~a~~~~~~m~~~g~~p~~~ 293 (295)
.-..+.+.+.+.|..++..
T Consensus 149 ~~~~~~~~L~~~g~~~~~~ 167 (179)
T 3f6q_A 149 LRELLRERAEKMGQNLNRI 167 (179)
T ss_dssp HHHHHHHHHHHTTCCCSCB
T ss_pred HHHHHHHHHHHhhcCcccC
Confidence 2346677777778777654
No 383
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=31.09 E-value=1.4e+02 Score=22.83 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=8.1
Q ss_pred HHccCCHHHHHHHHH
Q 022531 124 CAATLNIDQVKKFLD 138 (295)
Q Consensus 124 ~~~~~~~~~a~~~~~ 138 (295)
.++.|+.+....++.
T Consensus 31 A~~~g~~~~v~~ll~ 45 (351)
T 3utm_A 31 AARSGNEEKLMALLT 45 (351)
T ss_dssp HHHHTCHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHH
Confidence 345566665555543
No 384
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=30.85 E-value=72 Score=23.51 Aligned_cols=84 Identities=8% Similarity=0.037 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhccC-------CCCHHhHHHHHHHHHhcC---------ChHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 022531 202 KDKIDQIWKSLRMTKQ-------KMTSRNYICILSSYLMLG---------HLKEVGEIIDQWKQSATSDFDISACNRLLG 265 (295)
Q Consensus 202 ~~~a~~~~~~m~~~~~-------~~~~~~~~~li~~~~~~~---------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 265 (295)
.+.|..++..|--..+ .-...-|..+..+|++.| +.+.-.++++...+.|..+-=...|.++|+
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 4566666666643321 122344777888888777 456677777777777755444456888887
Q ss_pred HHHccCChHHHHHHHHHHHh
Q 022531 266 AFSDVGLTEKANEFHMLLLQ 285 (295)
Q Consensus 266 ~~~~~g~~~~a~~~~~~m~~ 285 (295)
--.-.-+.++..+++..+++
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 65556678888888887764
No 385
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.79 E-value=2e+02 Score=22.54 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 95 VEKVALVVEEIKRKNVVPD--IFTYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 95 ~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
.....++---+-...++|. .-+....|..+.+.+++..|..+-+++.+.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel 236 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKI 236 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444444445455543 234555666777888888888888887765
No 386
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=29.63 E-value=2.8e+02 Score=24.03 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHH
Q 022531 43 TSETYTALLHLYAGAKWTEKAEELFER 69 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~ 69 (295)
|..+|-..++-|...|......+++++
T Consensus 27 d~~~f~~~~~~~l~~g~~~~l~eilqD 53 (596)
T 4f52_E 27 DFGLFQLAGQRCIEEGHTDQLLEIIQN 53 (596)
T ss_dssp --CHHHHHHHHHHSSSCSHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHhC
Confidence 778888888888888888888887765
No 387
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=29.48 E-value=1.2e+02 Score=21.53 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 022531 200 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 279 (295)
Q Consensus 200 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 279 (295)
.+.....++.+.++.... +-..--.+|.++.+.|++++|.+++.++..... .... ..+.+++.-|.-+
T Consensus 13 ~~l~~~~~~~~~LR~qrH--df~NkLqvI~GLlql~~ydea~~yI~~~~~~~q---------~~~~-~~~i~~P~la~lL 80 (192)
T 1ixm_A 13 SDTALTNELIHLLGHSRH--DWMNKLQLIKGNLSLQKYDRVFEMIEEMVIDAK---------HESK-LSNLKTPHLAFDF 80 (192)
T ss_dssp CCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HHHH-HHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------HHHH-HHhCCCHHHHHHH
Confidence 345556666666655422 222233589999999999999999998766321 1122 4556776666655
Q ss_pred HHHH
Q 022531 280 HMLL 283 (295)
Q Consensus 280 ~~~m 283 (295)
+.+.
T Consensus 81 l~K~ 84 (192)
T 1ixm_A 81 LTFN 84 (192)
T ss_dssp HHGG
T ss_pred HHHH
Confidence 5544
No 388
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=29.22 E-value=1.5e+02 Score=20.75 Aligned_cols=27 Identities=4% Similarity=0.199 Sum_probs=10.9
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHH
Q 022531 98 VALVVEEIKRKNVVPDIFTYNLWISSC 124 (295)
Q Consensus 98 a~~~~~~m~~~~~~p~~~~~~~li~~~ 124 (295)
+..++..+.+.|..-|..--...+...
T Consensus 52 ie~vl~~L~~~g~ldD~rfA~~~vr~~ 78 (177)
T 3e3v_A 52 ISEIINKLIDLDLINDKNYAESYVRTM 78 (177)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 334444444444443333333333333
No 389
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=29.07 E-value=1.7e+02 Score=21.50 Aligned_cols=131 Identities=11% Similarity=0.176 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHHhcc-ChhHHHHHHhhcccCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHHHhCC-CCCCHHHH
Q 022531 8 VLSDSDYATRIDLMTKVF-GIHSGERYFEGLPLSAK---TSETYTALLHLYAGAKWTEKAEELFERVKQSN-LSFNALMY 82 (295)
Q Consensus 8 ~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~ 82 (295)
.++...+..++..+...+ .-..+..+|..+...+. +..-+..++..+......++...+|+.+-..| -..+..-+
T Consensus 108 ~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef 187 (256)
T 2jul_A 108 LVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEM 187 (256)
T ss_dssp SEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHH
T ss_pred cCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 344555555555553222 34567788888876543 44445555555554455666777777664322 12344444
Q ss_pred HHHHHHHHh-cC-----------CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHHHHHHHH
Q 022531 83 NEMMTLYMS-VG-----------QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 140 (295)
Q Consensus 83 ~~li~~~~~-~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 140 (295)
..++..+.. .| .-+.+..+|+.+-..| ....++.-++..+.+....-+++..|+.+
T Consensus 188 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 188 LAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 444444321 13 2355666666664332 13457888888888888888888877654
No 390
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=28.96 E-value=41 Score=26.68 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=12.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 022531 226 CILSSYLMLGHLKEVGEIIDQW 247 (295)
Q Consensus 226 ~li~~~~~~~~~~~A~~~~~~~ 247 (295)
.+++.+...+..+.-..+++.+
T Consensus 219 ~ViQ~~l~~~~~~~~~~i~~~l 240 (351)
T 3gvo_A 219 YVIQHVLEHGRPEDKSKIVSEI 240 (351)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTT
T ss_pred HHHHHHHHhCchhhHHHHHHHH
Confidence 4566666666655544555443
No 391
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.84 E-value=3e+02 Score=24.20 Aligned_cols=28 Identities=4% Similarity=-0.102 Sum_probs=18.6
Q ss_pred hHhHHHHHHH-----HHccCCHHHHHHHHHHHh
Q 022531 114 IFTYNLWISS-----CAATLNIDQVKKFLDEMS 141 (295)
Q Consensus 114 ~~~~~~li~~-----~~~~~~~~~a~~~~~~~~ 141 (295)
..|+..|++. +...|+++.|++.++++.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 4455555443 367889999988877754
No 392
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=28.65 E-value=27 Score=29.03 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=33.6
Q ss_pred cCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCC
Q 022531 234 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 294 (295)
Q Consensus 234 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 294 (295)
..++++|++..++.++.+. |-.. |-.-.|.++|.++.++|+.||..|
T Consensus 216 ~~~ldeal~~~~~a~~~~~--~~SI------------g~~GNaadv~~~l~~~~i~~Dlvt 262 (557)
T 1uwk_A 216 ATDLDDALVRIAKYTAEGK--AISI------------ALHGNAAEILPELVKRGVRPDMVT 262 (557)
T ss_dssp CSSHHHHHHHHHHHHHTTC--CCEE------------EEESCHHHHHHHHHHHTCCCSEEC
T ss_pred cCCHHHHHHHHHHHHHcCC--ceEE------------EEeccHHHHHHHHHHCCCCCCCCC
Confidence 4578888888888877653 3322 333457788999999999998765
No 393
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=28.65 E-value=28 Score=28.96 Aligned_cols=47 Identities=21% Similarity=0.157 Sum_probs=33.2
Q ss_pred cCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCC
Q 022531 234 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 294 (295)
Q Consensus 234 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 294 (295)
..++++|++..++.++.+ +|-.. |-.-.|.++|.++.++|+.||..|
T Consensus 211 ~~~ldeal~~~~~a~~~~--~~~SI------------g~~GNaadv~~~l~~~~i~~Dlvt 257 (551)
T 1x87_A 211 TDSLDAALEMAKQAKEEK--KALSI------------GLVGNAAEVLPRLVETGFVPDVLT 257 (551)
T ss_dssp ESCHHHHHHHHHHHHHTT--CCEEE------------EEESCHHHHHHHHHHTTCCCSEEC
T ss_pred cCCHHHHHHHHHHHHHcC--CceEE------------EEeccHHHHHHHHHHCCCCCCCCC
Confidence 457888888888887765 33222 333447788899999999998765
No 394
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=28.49 E-value=1.2e+02 Score=19.45 Aligned_cols=90 Identities=13% Similarity=0.032 Sum_probs=48.0
Q ss_pred chhhHHHHHHHHHHHhcCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 022531 165 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM-TKQKMTSRNYICILSSYLMLGHLKEVGEI 243 (295)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 243 (295)
.+..|.. -+++.... .+|......++..+... ++.+.++.+...+ .|+ .+.++...++...+.|-++.. +.
T Consensus 3 ~~~~al~-~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~ 74 (119)
T 1wty_A 3 SLARAVE-RLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PF 74 (119)
T ss_dssp CHHHHHH-HHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HH
T ss_pred HHHHHHH-HHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HH
Confidence 3455655 55555333 23444444454433221 3444444444332 455 355777888888888877665 55
Q ss_pred HHHHhhhcCCCCCHHHHHHHH
Q 022531 244 IDQWKQSATSDFDISACNRLL 264 (295)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~ 264 (295)
|..|.... ...+.+|+...
T Consensus 75 w~~m~~~R--N~~vH~Y~~~~ 93 (119)
T 1wty_A 75 WLEMLELR--NLTNHTYDEAL 93 (119)
T ss_dssp HHHHHHHH--HHGGGTTSHHH
T ss_pred HHHHHHHh--hHhcccccHHH
Confidence 66665533 23455665543
No 395
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=28.48 E-value=1.2e+02 Score=21.55 Aligned_cols=153 Identities=12% Similarity=-0.017 Sum_probs=73.5
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhcCCCcc------ccHHHHHH
Q 022531 121 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW------ITYDFLII 194 (295)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~ 194 (295)
+...++.|+.+.+..+++.-... ....+..-.+ .+...+..|+.+-+.. +.+.+..++. .-++.|..
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t-~L~~A~~~~~~~~v~~-----Ll~~~~~~~~~~~~~~~g~t~L~~ 78 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSL-LLQKDQDGRI-PLHWSVSFQAHEITSF-----LLSKMENVNLDDYPDDSGWTPFHI 78 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCC-HHHHHHHTTCHHHHHH-----HHHTCTTCCGGGCCCTTSCCHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCC-HHHHHHHcCCHHHHHH-----HHhccccccccccCCCCCCCHHHH
Confidence 44556778888877777654332 1123333333 4444556777664444 4555533222 22334433
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc--CCCCHHh--HHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHcc
Q 022531 195 LYAGLGNKDKIDQIWKSLRMTK--QKMTSRN--YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 270 (295)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (295)
.+..|+.+ +++.+.+.| ..++... -...+...+..|+.+-+..+++.-.. ...++..-.+. +...+..
T Consensus 79 -A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~-L~~A~~~ 150 (228)
T 2dzn_A 79 -ACSVGNLE----VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS--VRIKDKFNQIP-LHRAASV 150 (228)
T ss_dssp -HHHHCCHH----HHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC--SCCCCTTSCCH-HHHHHHT
T ss_pred -HHHcCCHH----HHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC--ccccCCCCCCH-HHHHHHc
Confidence 34566655 444445555 3222211 11244455577887665555443111 11122222333 3444566
Q ss_pred CChHHHHHHHHHHHhcC-CCCCC
Q 022531 271 GLTEKANEFHMLLLQKN-CAPTN 292 (295)
Q Consensus 271 g~~~~a~~~~~~m~~~g-~~p~~ 292 (295)
|+.+ +++.+++.| ..++.
T Consensus 151 ~~~~----~v~~Ll~~g~~~~~~ 169 (228)
T 2dzn_A 151 GSLK----LIELLCGLGKSAVNW 169 (228)
T ss_dssp TCHH----HHHHHHTTTCCCSCC
T ss_pred CCHH----HHHHHHhcCcccccC
Confidence 7654 455556666 55543
No 396
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=28.20 E-value=28 Score=28.92 Aligned_cols=47 Identities=17% Similarity=0.093 Sum_probs=34.1
Q ss_pred cCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCCC
Q 022531 234 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 294 (295)
Q Consensus 234 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 294 (295)
..++++|++..++.++.+ +|-.. |-.-.|.++|.++.++|+.||..|
T Consensus 212 ~~~ldeal~~~~~a~~~~--~~~SI------------g~~GNaadv~~~l~~~~i~~Dlvt 258 (552)
T 2fkn_A 212 TASIEEALAWAEEAKLAG--KPLSI------------ALLGNAAEVHHTLLNRGVKIDIVT 258 (552)
T ss_dssp ESCHHHHHHHHHHHHHTT--CCEEE------------EEESCHHHHHHHHHTTTCCCSEEC
T ss_pred cCCHHHHHHHHHHHHHcC--CceEE------------EEeccHHHHHHHHHHCCCCCCCCC
Confidence 457888888888887765 33222 334457889999999999998765
No 397
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=27.90 E-value=2e+02 Score=21.91 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=58.3
Q ss_pred HHHHHHHhccChhHHHHHHhhcccC--CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHh
Q 022531 16 TRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM--YNEMMTLYMS 91 (295)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~ 91 (295)
..+...++.|+.+....++...... .+|..-.+. +...+..|+.+-+..++ +.|..++... -.+.+...+.
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP-LHLAAGYNRVRIVQLLL----QHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCH-HHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCH-HHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCcHHHHHHH
Confidence 3455667889999999988764332 123333333 33445667766555444 4444332221 1123444456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChH---hHHHHHHHHHccCCHHHHHHHHH
Q 022531 92 VGQVEKVALVVEEIKRKNVVPDIF---TYNLWISSCAATLNIDQVKKFLD 138 (295)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~ 138 (295)
.|+.+- ++.+.+.|..++.. -++. +...+..|+.+-+..+++
T Consensus 101 ~g~~~i----v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 101 YGHYEV----TELLLKHGACVNAMDLWQFTP-LHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp TTCHHH----HHHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHHHHH
T ss_pred CCCHHH----HHHHHHCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHH
Confidence 677554 44445556554432 2233 334456677765555544
No 398
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=27.63 E-value=1.6e+02 Score=20.50 Aligned_cols=28 Identities=7% Similarity=-0.149 Sum_probs=12.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 022531 86 MTLYMSVGQVEKVALVVEEIKRKNVVPD 113 (295)
Q Consensus 86 i~~~~~~~~~~~a~~~~~~m~~~~~~p~ 113 (295)
+...+..|+.+.-.++.+-+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3333444444444444445555554443
No 399
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.52 E-value=2.8e+02 Score=23.49 Aligned_cols=62 Identities=11% Similarity=-0.014 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhccChhHHHHHHhhcccCC---CCH--HH-HHHHHHHHHccCcHHHHHHHHHHHHhC
Q 022531 12 SDYATRIDLMTKVFGIHSGERYFEGLPLSA---KTS--ET-YTALLHLYAGAKWTEKAEELFERVKQS 73 (295)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---p~~--~~-~~~li~~~~~~~~~~~a~~~~~~m~~~ 73 (295)
..+|.+++.|...+.++.|..+.....-.. ++. .. +.-+...+.-.+++.+|.+.|......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 355666666666666666666666553210 110 11 122344455566666666666655543
No 400
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=27.48 E-value=75 Score=18.82 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=20.0
Q ss_pred HHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 022531 32 RYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFE 68 (295)
Q Consensus 32 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 68 (295)
.++.+++...|++.||+-+....-+..-..++..+.+
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik 60 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAK 60 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHH
Confidence 4556666655677777766655544433344444433
No 401
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.19 E-value=1.6e+02 Score=20.38 Aligned_cols=52 Identities=6% Similarity=-0.087 Sum_probs=30.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--ChHhHHHHHH-H-----HHccCCHHHHHHHHHHHhh
Q 022531 91 SVGQVEKVALVVEEIKRKNVVP--DIFTYNLWIS-S-----CAATLNIDQVKKFLDEMSC 142 (295)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 142 (295)
..|++-+|.++|+..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3367777777777766654444 3444555555 2 2345666666666666544
No 402
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=26.78 E-value=1.7e+02 Score=20.63 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=6.6
Q ss_pred HHHhcCChHHHHHHH
Q 022531 230 SYLMLGHLKEVGEII 244 (295)
Q Consensus 230 ~~~~~~~~~~A~~~~ 244 (295)
..+..|+.+-+..++
T Consensus 180 ~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 180 HALAEGHGDAAVLLV 194 (228)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 334445554444433
No 403
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.76 E-value=1.1e+02 Score=18.49 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCC
Q 022531 93 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 129 (295)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 129 (295)
...++|.++++.+... ...+|..++.++...+.
T Consensus 50 t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCH
Confidence 3444555555444433 22344444444444443
No 404
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=25.48 E-value=80 Score=18.90 Aligned_cols=31 Identities=10% Similarity=0.002 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHh-CCCCCChHhHHHHHHHHHc
Q 022531 95 VEKVALVVEEIKR-KNVVPDIFTYNLWISSCAA 126 (295)
Q Consensus 95 ~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~ 126 (295)
.++|...|.+|+. .++.|+ .+|...+...+.
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~ 47 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVF 47 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHcc
Confidence 4566666666654 334333 456655555443
No 405
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=25.44 E-value=2.2e+02 Score=22.36 Aligned_cols=110 Identities=10% Similarity=0.094 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhC---CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHccCCHHHHH
Q 022531 61 EKAEELFERVKQS---NLSFN---ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK 134 (295)
Q Consensus 61 ~~a~~~~~~m~~~---~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 134 (295)
.+|..+|..+... .+.++ ....-..+..+.+.-+ -++++.+.+.|+.|...++.-++..+++.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~d----P~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRID----EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 4566677766543 12222 2222233333443333 346677788889988888888888888888899999
Q ss_pred HHHHHHhhcCCCCCC-HHHH--HHHHHHH----HhcCchhhHHHHHHHH
Q 022531 135 KFLDEMSCDSGGSDD-WVKY--VNLVNIY----ITASHLVNAESSTLVE 176 (295)
Q Consensus 135 ~~~~~~~~~~~~~~~-~~~~--~~l~~~~----~~~~~~~~a~~~~~~~ 176 (295)
.+++.+... |.... ...| .+++..+ ....+.++... ++..
T Consensus 265 rlWD~~l~~-g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~-~L~~ 311 (345)
T 2qfz_A 265 RLWDTYQSE-PDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLL-FLQN 311 (345)
T ss_dssp HHHHHHTTS-TTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHH-HHTS
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHH-HHHc
Confidence 999999886 43322 2222 2333322 33578888877 6665
No 406
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=25.29 E-value=72 Score=18.45 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhC-CCCCChHhHHHHHHHHHc
Q 022531 95 VEKVALVVEEIKRK-NVVPDIFTYNLWISSCAA 126 (295)
Q Consensus 95 ~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~ 126 (295)
.++|.+.|.+|++. ++. ...+|...+..+..
T Consensus 14 ~eea~~~F~~LL~e~~V~-~~~tWe~~~~~i~~ 45 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVP-SNASWEQAMKMIIN 45 (71)
T ss_dssp HHHHHHHHHHHHHHTTCC-TTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcC-CCCCHHHHHHHHcc
Confidence 45566666665543 333 23455555554443
No 407
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=24.21 E-value=1.8e+02 Score=20.00 Aligned_cols=42 Identities=5% Similarity=0.011 Sum_probs=19.0
Q ss_pred hhHHHHHHhhcccCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 022531 27 IHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFE 68 (295)
Q Consensus 27 ~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 68 (295)
.+++..++..+...+.....|.-.+..+.....+..|.+.|+
T Consensus 45 ~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~~~l~~aF~~fD 86 (174)
T 2i7a_A 45 LDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQ 86 (174)
T ss_dssp HHHHHHHHHHHCSSCSSEECHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666666665543333334333333333333444444443
No 408
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.77 E-value=1.3e+02 Score=21.07 Aligned_cols=46 Identities=7% Similarity=-0.045 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHcc
Q 022531 223 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 270 (295)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (295)
.++-++.+++.-.-+++++-.+++....|. .+..+|-.-++.+++.
T Consensus 113 l~~Qll~l~Aed~AieDaIy~L~~al~~g~--I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 113 GLNQLYNLVAQDYALTDTIECLSRMLHRGT--IPLDTFVKQGRELARQ 158 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHH
Confidence 345556666655556666666666666552 3455555555544443
No 409
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=23.54 E-value=1.5e+02 Score=21.60 Aligned_cols=46 Identities=17% Similarity=0.057 Sum_probs=21.0
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCHHhH--HHHHHHHHhcCChHHHHHHHH
Q 022531 196 YAGLGNKDKIDQIWKSLRMTKQKMTSRNY--ICILSSYLMLGHLKEVGEIID 245 (295)
Q Consensus 196 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~~~~A~~~~~ 245 (295)
.+..|+.+-+ +.+.+.|..++.... ...+...++.|+.+-+..+++
T Consensus 164 A~~~~~~~~v----~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 211 (253)
T 1yyh_A 164 AAAVNNVDAA----VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211 (253)
T ss_dssp HHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 3455665543 334445555443221 123444455666655444443
No 410
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=23.45 E-value=1.9e+02 Score=19.98 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcccCCCCHHHHHHHHHHHHccCc--HHHHHHHHHHHHh
Q 022531 13 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW--TEKAEELFERVKQ 72 (295)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~ 72 (295)
....+++=|...++.++|...++++....-.......+|..-...++ -+.+-.++..+..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34568888999999999999999987522123333334443333333 2345667777644
No 411
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=23.18 E-value=1.4e+02 Score=22.62 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=43.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 022531 195 LYAGLGNKDKIDQIWKSLRMTK-QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 250 (295)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 250 (295)
.|....++.....++..|.... -.|+....-.++++|.+.-+-.+|.+.++.....
T Consensus 182 iC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~ 238 (268)
T 2fv2_A 182 ICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPD 238 (268)
T ss_dssp HTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCG
T ss_pred HHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcH
Confidence 4455567777778888886642 3688888899999999999999999988876543
No 412
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.47 E-value=2.3e+02 Score=20.76 Aligned_cols=51 Identities=8% Similarity=0.032 Sum_probs=23.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-------ChHhHHHHHHHHH--ccCCHHHHHHHHHH
Q 022531 89 YMSVGQVEKVALVVEEIKRKNVVP-------DIFTYNLWISSCA--ATLNIDQVKKFLDE 139 (295)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~p-------~~~~~~~li~~~~--~~~~~~~a~~~~~~ 139 (295)
.++.|+.+.+..+++...+.+... +..-++.|..++. +.|+.+-+..+++.
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 344566555555555554443221 2223344444433 23555555555444
No 413
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=22.42 E-value=5.5e+02 Score=25.00 Aligned_cols=85 Identities=9% Similarity=0.060 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhccCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 022531 202 KDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 280 (295)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 280 (295)
.++..+.|.++.+.- .+ |.......+.--.+++++..|++++.++.++. |+...|..++..+...|- +....+.
T Consensus 1265 ~~~~~~~~~el~k~~-d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k---~~~~~~~~~~~~~~~l~w-~h~~~~~ 1339 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFV-DANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK---RTRDHFVELAAINGALGH-EHIRTVI 1339 (1354)
T ss_dssp HHHHHHHHHHHTTSS-CTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHSC-HHHHHHH
T ss_pred HHHHHHHHHHHHhhc-ccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 445566677766542 33 33333334444457899999999999998864 677889888888877765 4445566
Q ss_pred HHHHhcCCCCC
Q 022531 281 MLLLQKNCAPT 291 (295)
Q Consensus 281 ~~m~~~g~~p~ 291 (295)
+++.-..+.|+
T Consensus 1340 ~~~~~~~~p~~ 1350 (1354)
T 3lxu_X 1340 NRMMITAFPSS 1350 (1354)
T ss_dssp HHHHHHHSCSS
T ss_pred HhhhhhhCccc
Confidence 66554444443
No 414
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=22.00 E-value=75 Score=19.43 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=19.5
Q ss_pred HHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 022531 206 DQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIID 245 (295)
Q Consensus 206 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 245 (295)
.++|..+.+.+ ..++.-...+...+.+.|+.|...++..
T Consensus 43 ~dlf~~Le~~~-~l~~~nl~~L~elL~~I~R~DLl~~v~~ 81 (91)
T 1a1w_A 43 LDLFSMLLEQN-DLEPGHTELLRELLASLRRHDLLRRVDD 81 (91)
T ss_dssp HHHHHHHHHTT-SCBTTBCHHHHHHHHHHTCSHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCcchHHHHHHHHHHCCHHHHHHHHHH
Confidence 56666665555 2233333345555555566555544443
No 415
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=21.85 E-value=1.3e+02 Score=19.86 Aligned_cols=23 Identities=0% Similarity=0.018 Sum_probs=14.9
Q ss_pred HHHHHHHHHhccChhHHHHHHhh
Q 022531 14 YATRIDLMTKVFGIHSGERYFEG 36 (295)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~ 36 (295)
+...+...++.|+.+.+..+++.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~ 27 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQN 27 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTS
T ss_pred HhhHHHHHHHcCCHHHHHHHHhC
Confidence 34455566677777777777753
No 416
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=21.68 E-value=2.5e+02 Score=20.84 Aligned_cols=18 Identities=11% Similarity=-0.073 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhc-CCHHH
Q 022531 80 LMYNEMMTLYMSV-GQVEK 97 (295)
Q Consensus 80 ~~~~~li~~~~~~-~~~~~ 97 (295)
..|...+...+.. |++.+
T Consensus 130 ~aYt~~ll~~a~~~g~~~~ 148 (248)
T 3no6_A 130 DHYIKHMYFNAFARENAAF 148 (248)
T ss_dssp HHHHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHHHHhcCCCHHH
Confidence 3454444444444 44444
No 417
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=21.63 E-value=82 Score=23.96 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=20.1
Q ss_pred HHHHHHHHhccChhHHHHHHhhccc
Q 022531 15 ATRIDLMTKVFGIHSGERYFEGLPL 39 (295)
Q Consensus 15 ~~li~~~~~~~~~~~A~~~~~~~~~ 39 (295)
|.+++.|..+|++..|.++|+.++.
T Consensus 38 n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 38 NAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 5677888888888888888888764
No 418
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.57 E-value=1.6e+02 Score=18.40 Aligned_cols=58 Identities=7% Similarity=0.090 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH----hhhcCCCCCHHHHHHH
Q 022531 204 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQW----KQSATSDFDISACNRL 263 (295)
Q Consensus 204 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~l 263 (295)
.+.++.+++..-|+.|+..+...++..|...+- + +.++.++. ...+...|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 356667777777888888888888887777664 1 33333322 2233345666655443
No 419
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.49 E-value=1.7e+02 Score=24.32 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCH--------HhHH-HHHHHHHhcCChHHHHHHHHHHhh
Q 022531 189 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS--------RNYI-CILSSYLMLGHLKEVGEIIDQWKQ 249 (295)
Q Consensus 189 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--------~~~~-~li~~~~~~~~~~~A~~~~~~~~~ 249 (295)
.+.|...|.+.|+..-+..+++.+...+.-|+. .+|. -+.+.+...+++.+|.+.+....+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 355666777777777777777777665542222 1222 234444556666666665554443
No 420
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=20.98 E-value=4.9e+02 Score=23.88 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHccCc---HHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 022531 43 TSETYTALLHLYAGAKW---TEKAEELFERVKQS----NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF 115 (295)
Q Consensus 43 ~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 115 (295)
+...-..++...|+.|. .+.|.+.|++.... .++||... .+.+..- |.-++-..+++..... .+..
T Consensus 679 ~~~lr~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~---~vy~~~~-g~~~~~~~l~~~y~~~---~~~~ 751 (897)
T 2xdt_A 679 ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL---AVFAVGA-QSTEGWDFLYSKYQFS---LSST 751 (897)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHH---HHHHHHT-TSHHHHHHHHHHHTTC---CCHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhh---hEEEEec-CCHHHHHHHHHHHHcc---CCHH
Confidence 44455566666666665 67788888887654 24455432 1222222 6655555566665543 2444
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022531 116 TYNLWISSCAATLNIDQVKKFLDEMSCD 143 (295)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 143 (295)
--..++.+++...+.....++++.....
T Consensus 752 ek~~ll~aL~c~~~~~~l~~~L~~~~~~ 779 (897)
T 2xdt_A 752 EKSQIEFALCRTQNKEKLQWLLDESFKG 779 (897)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHhCC
Confidence 4577888888889999888888887753
No 421
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.65 E-value=1.6e+02 Score=18.15 Aligned_cols=25 Identities=12% Similarity=-0.053 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHH
Q 022531 45 ETYTALLHLYAGAKWTEKAEELFER 69 (295)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~ 69 (295)
..+.-....+.+.|++++|++..++
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHH
Confidence 3455556667777777777665544
No 422
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=20.37 E-value=1.9e+02 Score=20.57 Aligned_cols=51 Identities=10% Similarity=-0.124 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 022531 189 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 248 (295)
Q Consensus 189 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 248 (295)
.-..|.++...|++++|.+++.++... +..... ..+.+++.-|.-++....
T Consensus 35 kLqvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl~K~~ 85 (192)
T 1ixm_A 35 KLQLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFLTFNW 85 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHHHHHH
Confidence 335788999999999999999988653 222222 566777776666665543
No 423
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=20.07 E-value=2.3e+02 Score=19.80 Aligned_cols=12 Identities=8% Similarity=-0.360 Sum_probs=5.5
Q ss_pred HHHHHhcCChHH
Q 022531 228 LSSYLMLGHLKE 239 (295)
Q Consensus 228 i~~~~~~~~~~~ 239 (295)
+....+.|..+-
T Consensus 195 l~~A~~~~~~~i 206 (223)
T 2f8y_A 195 RDIAQERMHHDI 206 (223)
T ss_dssp HHHHHHTTCHHH
T ss_pred HHHHHHhcchHH
Confidence 333445555443
No 424
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=20.03 E-value=2.7e+02 Score=21.76 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=31.7
Q ss_pred HHHHHHhccCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHhhhc
Q 022531 208 IWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 251 (295)
Q Consensus 208 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 251 (295)
+++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...+
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g 274 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEP 274 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTST
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCC
Confidence 44555666777766666677777777777888888888887655
Done!