BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022534
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 120/281 (42%), Gaps = 31/281 (11%)
Query: 27 ETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDF 86
+ G++D+ + LHG P+ SY YR ++ +++G APD+ GFG SDKP D+
Sbjct: 40 DEGNSDAE-DVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP---VDEE 95
Query: 87 DFTENEFHXXXXXXXXXXXXXYPFFLVVQ---GFLVGSYGLTWALKNPSRISKLAILNSP 143
D+T EFH LVVQ GFL GLT + +PSR +L I+N+
Sbjct: 96 DYT-FEFHRNFLLALIERLDLRNITLVVQXWGGFL----GLTLPMADPSRFKRLIIMNAC 150
Query: 144 LTASSPLPGLFQQLRIPLLGEFTA-------QNAIMAERFIEAGSPYVLKLDKADVYRLP 196
L F FTA + + ++F++ +P L +A Y P
Sbjct: 151 LMTDPVTQPAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAP-TLTEAEASAYAAP 209
Query: 197 YLASSGPG----FALLEAARKVNFKDISSRIGAGFSSGSWDKPVLVAWGISDKYLPQSV- 251
+ +S F + A R DIS+ F W+ +A G+ DK L V
Sbjct: 210 FPDTSYQAGVRKFPKMVAQRDQACIDISTE-AISFWQNDWNGQTFMAIGMKDKLLGPDVM 268
Query: 252 --AEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKVVDGLRYF 290
+ G P ++ I AGH QE + + L++F
Sbjct: 269 YPMKALINGCPEPLE---IADAGHFVQEFGEQVAREALKHF 306
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 120/281 (42%), Gaps = 31/281 (11%)
Query: 27 ETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDF 86
+ G++D+ + LHG P+ SY YR ++ +++G APD+ GFG SDKP D+
Sbjct: 40 DEGNSDAE-DVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP---VDEE 95
Query: 87 DFTENEFHXXXXXXXXXXXXXYPFFLVVQ---GFLVGSYGLTWALKNPSRISKLAILNSP 143
D+T EFH LVVQ GFL GLT + +PSR +L I+N+
Sbjct: 96 DYT-FEFHRNFLLALIERLDLRNITLVVQDWGGFL----GLTLPMADPSRFKRLIIMNAC 150
Query: 144 LTASSPLPGLFQQLRIPLLGEFTA-------QNAIMAERFIEAGSPYVLKLDKADVYRLP 196
L F FTA + + ++F++ +P L +A Y P
Sbjct: 151 LMTDPVTQPAFSAFVTQPADGFTAYKYDLVTPSDLRLDQFMKRWAP-TLTEAEASAYAAP 209
Query: 197 YLASSGPG----FALLEAARKVNFKDISSRIGAGFSSGSWDKPVLVAWGISDKYLPQSV- 251
+ +S F + A R DIS+ F W+ +A G+ DK L V
Sbjct: 210 FPDTSYQAGVRKFPKMVAQRDQACIDISTE-AISFWQNDWNGQTFMAIGMKDKLLGPDVM 268
Query: 252 --AEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKVVDGLRYF 290
+ G P ++ I AGH QE + + L++F
Sbjct: 269 YPMKALINGCPEPLE---IADAGHFVQEFGEQVAREALKHF 306
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 120/281 (42%), Gaps = 31/281 (11%)
Query: 27 ETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDF 86
+ G++D+ + LHG P+ SY YR ++ +++G APD+ GFG SDKP D+
Sbjct: 40 DEGNSDAE-DVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP---VDEE 95
Query: 87 DFTENEFHXXXXXXXXXXXXXYPFFLVVQ---GFLVGSYGLTWALKNPSRISKLAILNSP 143
D+T EFH LVVQ GFL GLT + +PSR +L I+N+
Sbjct: 96 DYT-FEFHRNFLLALIERLDLRNITLVVQDWGGFL----GLTLPMADPSRFKRLIIMNAC 150
Query: 144 LTASSPLPGLFQQLRIPLLGEFTA-------QNAIMAERFIEAGSPYVLKLDKADVYRLP 196
L F FTA + + ++F++ +P L +A Y P
Sbjct: 151 LMTDPVTQPAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAP-TLTEAEASAYAAP 209
Query: 197 YLASSGPG----FALLEAARKVNFKDISSRIGAGFSSGSWDKPVLVAWGISDKYLPQSV- 251
+ +S F + A R DIS+ F W+ +A G+ DK L V
Sbjct: 210 FPDTSYQAGVRKFPKMVAQRDQACIDISTE-AISFWQNDWNGQTFMAIGMKDKLLGPDVM 268
Query: 252 --AEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKVVDGLRYF 290
+ G P ++ I AGH QE + + L++F
Sbjct: 269 YPMKALINGCPEPLE---IADAGHFVQEFGEQVAREALKHF 306
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 120/281 (42%), Gaps = 31/281 (11%)
Query: 27 ETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDF 86
+ G++D+ + LHG P+ SY YR ++ +++G APD+ GFG SDKP D+
Sbjct: 40 DEGNSDAE-DVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP---VDEE 95
Query: 87 DFTENEFHXXXXXXXXXXXXXYPFFLVVQ---GFLVGSYGLTWALKNPSRISKLAILNSP 143
D+T EFH LVVQ GFL GLT + +PSR +L I+N+
Sbjct: 96 DYT-FEFHRNFLLALIERLDLRNITLVVQDWGGFL----GLTLPMADPSRFKRLIIMNAC 150
Query: 144 LTASSPLPGLFQQLRIPLLGEFTA-------QNAIMAERFIEAGSPYVLKLDKADVYRLP 196
L F FTA + + ++F++ +P L +A Y P
Sbjct: 151 LMTDPVTQPAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAP-TLTEAEASAYAAP 209
Query: 197 YLASSGPG----FALLEAARKVNFKDISSRIGAGFSSGSWDKPVLVAWGISDKYLPQSV- 251
+ +S F + A R DIS+ F W+ +A G+ DK L V
Sbjct: 210 FPDTSYQAGVRKFPKMVAQRDQACIDISTE-AISFWQNDWNGQTFMAIGMKDKLLGPDVM 268
Query: 252 --AEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKVVDGLRYF 290
+ G P ++ I AGH QE + + L++F
Sbjct: 269 YPMKALINGCPEPLE---IADAGHFVQEFGEQVAREALKHF 306
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 120/281 (42%), Gaps = 31/281 (11%)
Query: 27 ETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDF 86
+ G++D+ + LHG P+ SY YR ++ +++G APD+ GFG SDKP D+
Sbjct: 40 DEGNSDAE-DVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP---VDEE 95
Query: 87 DFTENEFHXXXXXXXXXXXXXYPFFLVVQ---GFLVGSYGLTWALKNPSRISKLAILNSP 143
D+T EFH LVVQ GFL GLT + +PSR +L I+N+
Sbjct: 96 DYT-FEFHRNFLLALIERLDLRNITLVVQDWGGFL----GLTLPMADPSRFKRLIIMNAX 150
Query: 144 LTASSPLPGLFQQLRIPLLGEFTA-------QNAIMAERFIEAGSPYVLKLDKADVYRLP 196
L F FTA + + ++F++ +P L +A Y P
Sbjct: 151 LMTDPVTQPAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAP-TLTEAEASAYAAP 209
Query: 197 YLASSGPG----FALLEAARKVNFKDISSRIGAGFSSGSWDKPVLVAWGISDKYLPQSV- 251
+ +S F + A R DIS+ F W+ +A G+ DK L V
Sbjct: 210 FPDTSYQAGVRKFPKMVAQRDQAXIDISTE-AISFWQNDWNGQTFMAIGMKDKLLGPDVM 268
Query: 252 --AEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKVVDGLRYF 290
+ G P ++ I AGH QE + + L++F
Sbjct: 269 YPMKALINGCPEPLE---IADAGHFVQEFGEQVAREALKHF 306
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 122/281 (43%), Gaps = 31/281 (11%)
Query: 27 ETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDF 86
+ G++D+ + LHG P+ SY YR ++ +++G APD+ GFG SDKP D+
Sbjct: 40 DEGNSDAE-DVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP---VDEE 95
Query: 87 DFTENEFHXXXXXXXXXXXXXYPFFLVVQ---GFLVGSYGLTWALKNPSRISKLAILNSP 143
D+T EFH LVVQ GFL GLT + +PSR +L I+N+
Sbjct: 96 DYT-FEFHRNFLLALIERLDLRNITLVVQDWGGFL----GLTLPMADPSRFKRLIIMNAC 150
Query: 144 L-TASSPLPGLFQQLRIPLLG------EFTAQNAIMAERFIEAGSPYVLKLDKADVYRLP 196
L T P + P G + + + ++F++ +P L +A Y P
Sbjct: 151 LMTDPVTQPAFSAFVTQPADGWTAWKYDLVTPSDLRLDQFMKRWAP-TLTEAEASAYAAP 209
Query: 197 YLASSGPG----FALLEAARKVNFKDISSRIGAGFSSGSWDKPVLVAWGISDKYLPQSV- 251
+ +S F + A R DIS+ F W+ +A G+ DK L V
Sbjct: 210 FPDTSYQAGVRKFPKMVAQRDQACIDISTE-AISFWQNDWNGQTFMAIGMKDKLLGPDVM 268
Query: 252 --AEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKVVDGLRYF 290
+ G P ++ I AGH QE + + L++F
Sbjct: 269 YPMKALINGCPEPLE---IADAGHFVQEFGEQVAREALKHF 306
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 94/251 (37%), Gaps = 26/251 (10%)
Query: 37 TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXX 96
T + LHG PS S+ YR ++ + AG APD GFG SDKP DD +T FH
Sbjct: 48 TFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPT---DDAVYTFG-FHRR 103
Query: 97 XXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILNSPLTAS-SPLPGLFQ 155
LV Q + G GLT + P + +L ++N+ L SP G F+
Sbjct: 104 SLLAFLDALQLERVTLVCQDW-GGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKG-FE 161
Query: 156 QLRIPLLGEFTAQNAIMAERFIEA---------GSPYVLKLDKADVYRLPYLASSGPGFA 206
R + + +R I +P+ KA V R P + P
Sbjct: 162 SWRDFVANSPDLDVGKLMQRAIPGITDAEVAAYDAPFPGPEFKAGVRRFPAIVPITPDME 221
Query: 207 LLEAARKVNFKDISSRIGAGFSSGSWDKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQ 266
E R+ F S W P +A G D L V ++ +
Sbjct: 222 GAEIGRQA----------MSFWSTQWSGPTFMAVGAQDPVLGPEVMGMLRQAIRGCPEPM 271
Query: 267 MIEGAGHMPQE 277
++E GH QE
Sbjct: 272 IVEAGGHFVQE 282
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 112/278 (40%), Gaps = 53/278 (19%)
Query: 34 RLGT-IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGY--DDFDFTE 90
R GT ++FLHG P+ SY +RN++ ++ + C APD +G G SDKP+ Y DD
Sbjct: 30 RDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDLDYFFDD----- 83
Query: 91 NEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILN--SPLTASS 148
H LV+ + + G WA +NP R+ +A + P+
Sbjct: 84 ---HVRYLDAFIEALGLEEVVLVIHDW-GSALGFHWAKRNPERVKGIACMEFIRPIPTWD 139
Query: 149 PLP----GLFQQLRIPLLGE--FTAQNAIMAE---RFI----------EAGSPYVLKLDK 189
P LFQ R +G QNA + + +F+ P++ +D+
Sbjct: 140 EWPEFARELFQAFRTADVGRELIIDQNAFIEQVLPKFVVRPLTEVEMDHYREPFLKPVDR 199
Query: 190 ADVYR----LPYLASSGPGFALLEAARKVNFKDISSRIGAGFSSGSWDKPVLVAWGISDK 245
++R LP AL+EA +N+ S P L+ WG
Sbjct: 200 EPLWRFPNELPIAGEPANIVALVEA--YMNWLHQSP------------VPKLLFWGTPGV 245
Query: 246 YLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 283
+P + A + PN + + G H QED P+ +
Sbjct: 246 LIPPAEAARLAESLPNCKTVDIGPGL-HYLQEDNPDLI 282
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 26 RETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDD 85
RETG+ D+ + ++FLHG P+ S+ +RN++ +S HC APD +GFG S KP+ Y
Sbjct: 22 RETGAQDAPV--VLFLHGNPTSSHIWRNILPLVSPVA-HCIAPDLIGFGQSGKPDIAYRF 78
Query: 86 FD 87
FD
Sbjct: 79 FD 80
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 26 RETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDD 85
RETG+ D+ + ++FLHG P+ S+ +RN++ +S HC APD +GFG S KP+ Y
Sbjct: 22 RETGAQDAPV--VLFLHGNPTSSHIWRNILPLVSPVA-HCIAPDLIGFGQSGKPDIAYRF 78
Query: 86 FD 87
FD
Sbjct: 79 FD 80
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 26 RETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDD 85
RETG+ D+ + ++FLHG P+ S+ +RN++ +S HC APD +GFG S KP+ Y
Sbjct: 22 RETGAQDAPV--VLFLHGNPTSSHIWRNILPLVSPVA-HCIAPDLIGFGQSGKPDIAYRF 78
Query: 86 FD 87
FD
Sbjct: 79 FD 80
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 109/270 (40%), Gaps = 37/270 (13%)
Query: 34 RLGT-IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGY--DDFDFTE 90
R GT ++FLHG P+ SY +RN++ ++ + C APD +G G SDKP+ Y DD
Sbjct: 30 RDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDLDYFFDD----- 83
Query: 91 NEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILN--SPLTASS 148
H LV+ + + G WA +NP R+ +A + P+
Sbjct: 84 ---HVRYLDAFIEALGLEEVVLVIHDW-GSALGFHWAKRNPERVKGIACMEFIRPIPTWD 139
Query: 149 PLPGL----FQQLRIPLLGE--FTAQNAIMAERFIEAGSP-YV---LKLDKADVYRLPYL 198
P FQ R +G QNA FIE P YV L + D YR P+L
Sbjct: 140 EWPEFARETFQAFRTADVGRELIIDQNA-----FIEGALPKYVVRPLTEVEMDHYREPFL 194
Query: 199 ASSGPGFALLEAARKVNFKDISSRIGAGFSS-GSW----DKPVLVAWGISDKYLPQSVAE 253
L ++ + I A + +W P L+ WG +P + A
Sbjct: 195 KPVD-REPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGVLIPPAEAA 253
Query: 254 EFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 283
+ PN + + G H QED P+ +
Sbjct: 254 RLAESLPNCKTVDIGPGL-HYLQEDNPDLI 282
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 107/270 (39%), Gaps = 37/270 (13%)
Query: 34 RLGT-IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGY--DDFDFTE 90
R GT ++FLHG P+ SY +RN++ ++ + C APD +G G SDKP+ Y DD
Sbjct: 30 RDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDLDYFFDD----- 83
Query: 91 NEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILN--SPLTASS 148
H LV+ + + G WA +NP R+ +A + P+
Sbjct: 84 ---HVRYLDAFIEALGLEEVVLVIHDW-GSALGFHWAKRNPERVKGIACMEFIRPIPTWD 139
Query: 149 PLPGL----FQQLRIPLLGE--FTAQNAIMAERFIEAGSPYV----LKLDKADVYRLPYL 198
P FQ R +G QNA FIE P L + D YR P+L
Sbjct: 140 EWPEFARETFQAFRTADVGRELIIDQNA-----FIEGVLPKCVVRPLTEVEMDHYREPFL 194
Query: 199 ASSGPGFALLEAARKVNFKDISSRIGAGFSS-GSW----DKPVLVAWGISDKYLPQSVAE 253
L ++ + I A + +W P L+ WG +P + A
Sbjct: 195 KPVD-REPLWRFPNEIPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGVLIPPAEAA 253
Query: 254 EFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 283
+ PN + + G H QED P+ +
Sbjct: 254 RLAESLPNCKTVDIGPGL-HYLQEDNPDLI 282
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 107/270 (39%), Gaps = 37/270 (13%)
Query: 34 RLGT-IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGY--DDFDFTE 90
R GT ++FLHG P+ SY +RN++ ++ + C APD +G G SDKP+ Y DD
Sbjct: 27 RDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDLDYFFDD----- 80
Query: 91 NEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILN--SPLTASS 148
H LV+ + + G WA +NP R+ +A + P+
Sbjct: 81 ---HVRYLDAFIEALGLEEVVLVIHDW-GSALGFHWAKRNPERVKGIACMEFIRPIPTWD 136
Query: 149 PLPGL----FQQLRIPLLGE--FTAQNAIMAERFIEAGSPYV----LKLDKADVYRLPYL 198
P FQ R +G QNA FIE P L + D YR P+L
Sbjct: 137 EWPEFARETFQAFRTADVGRELIIDQNA-----FIEGVLPKCVVRPLTEVEMDHYREPFL 191
Query: 199 ASSGPGFALLEAARKVNFKDISSRIGAGFSS-GSW----DKPVLVAWGISDKYLPQSVAE 253
L ++ + I A + +W P L+ WG +P + A
Sbjct: 192 KPVD-REPLWRFPNEIPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGVLIPPAEAA 250
Query: 254 EFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 283
+ PN + + G H QED P+ +
Sbjct: 251 RLAESLPNCKTVDIGPGL-HYLQEDNPDLI 279
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 108/270 (40%), Gaps = 37/270 (13%)
Query: 34 RLGT-IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGY--DDFDFTE 90
R GT ++FLHG P+ SY +RN++ ++ + C APD +G G SDKP+ Y DD
Sbjct: 30 RDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDLDYFFDD----- 83
Query: 91 NEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILN--SPLTASS 148
H LV+ + + G WA +NP R+ +A + P
Sbjct: 84 ---HVRYLDAFIEALGLEEVVLVIHDW-GSALGFHWAKRNPERVKGIACMEFIRPFPTWD 139
Query: 149 PLPGL----FQQLRIPLLGE--FTAQNAIMAERFIEAGSP-YV---LKLDKADVYRLPYL 198
P FQ R +G QNA FIE P YV L + D YR P+L
Sbjct: 140 EWPEFARETFQAFRTADVGRELIIDQNA-----FIEGALPKYVVRPLTEVEMDHYREPFL 194
Query: 199 ASSGPGFALLEAARKVNFKDISSRIGAGFSS-GSW----DKPVLVAWGISDKYLPQSVAE 253
L ++ + I A + +W P L+ WG +P + A
Sbjct: 195 KPVD-REPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGVLIPPAEAA 253
Query: 254 EFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 283
+ PN + + G H QED P+ +
Sbjct: 254 RLAESLPNCKTVDIGPGL-HYLQEDNPDLI 282
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 108/270 (40%), Gaps = 37/270 (13%)
Query: 34 RLGT-IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGY--DDFDFTE 90
R GT ++FLHG P+ SY +RN++ ++ + C APD +G G SDKP+ Y DD
Sbjct: 27 RDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDLDYFFDD----- 80
Query: 91 NEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILN--SPLTASS 148
H LV+ + + G WA +NP R+ +A + P
Sbjct: 81 ---HVRYLDAFIEALGLEEVVLVIHDW-GSALGFHWAKRNPERVKGIACMEFIRPFPTWD 136
Query: 149 PLPGL----FQQLRIPLLGE--FTAQNAIMAERFIEAGSP-YV---LKLDKADVYRLPYL 198
P FQ R +G QNA FIE P YV L + D YR P+L
Sbjct: 137 EWPEFARETFQAFRTADVGRELIIDQNA-----FIEGALPKYVVRPLTEVEMDHYREPFL 191
Query: 199 ASSGPGFALLEAARKVNFKDISSRIGAGFSS-GSW----DKPVLVAWGISDKYLPQSVAE 253
L ++ + I A + +W P L+ WG +P + A
Sbjct: 192 KPVD-REPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGFIIPPAEAA 250
Query: 254 EFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 283
+ PN + + G H QED P+ +
Sbjct: 251 RLAESLPNCKTVDIGPGL-HFLQEDNPDLI 279
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 108/270 (40%), Gaps = 37/270 (13%)
Query: 34 RLGT-IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGY--DDFDFTE 90
R GT ++FLHG P+ SY +RN++ ++ + C APD +G G SDKP+ Y DD
Sbjct: 30 RDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDLDYFFDD----- 83
Query: 91 NEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILN--SPLTASS 148
H LV+ + + G WA +NP R+ +A + P
Sbjct: 84 ---HVRYLDAFIEALGLEEVVLVIHDW-GSALGFHWAKRNPERVKGIACMEFIRPFPTWD 139
Query: 149 PLPGL----FQQLRIPLLGE--FTAQNAIMAERFIEAGSP-YV---LKLDKADVYRLPYL 198
P FQ R +G QNA FIE P YV L + D YR P+L
Sbjct: 140 EWPEFARETFQAFRTADVGRELIIDQNA-----FIEGALPKYVVRPLTEVEMDHYREPFL 194
Query: 199 ASSGPGFALLEAARKVNFKDISSRIGAGFSS-GSW----DKPVLVAWGISDKYLPQSVAE 253
L ++ + I A + +W P L+ WG +P + A
Sbjct: 195 KPVD-REPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGFIIPPAEAA 253
Query: 254 EFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 283
+ PN + + G H QED P+ +
Sbjct: 254 RLAESLPNCKTVDIGPGL-HFLQEDNPDLI 282
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 106/270 (39%), Gaps = 37/270 (13%)
Query: 34 RLGT-IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGY--DDFDFTE 90
R GT ++FLHG P+ SY +RN++ ++ + C APD +G G SDKP+ Y DD
Sbjct: 30 RDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDLDYFFDD----- 83
Query: 91 NEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILN--SPLTASS 148
H LV+ + + G WA +NP R+ +A + P
Sbjct: 84 ---HVRYLDAFIEALGLEEVVLVIHDW-GSALGFHWAKRNPERVKGIACMEFIRPFPTWD 139
Query: 149 PLPGL----FQQLRIPLLGE--FTAQNAIMAERFIEAGSPYV----LKLDKADVYRLPYL 198
P FQ R +G QNA FIE P L + D YR P+L
Sbjct: 140 EWPEFARETFQAFRTADVGRELIIDQNA-----FIEGALPKCVVRPLTEVEMDHYREPFL 194
Query: 199 ASSGPGFALLEAARKVNFKDISSRIGAGFSS-GSW----DKPVLVAWGISDKYLPQSVAE 253
L ++ + I A + +W P L+ WG +P + A
Sbjct: 195 KPVD-REPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGVLIPPAEAA 253
Query: 254 EFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 283
+ PN + + G H QED P+ +
Sbjct: 254 RLAESLPNCKTVDIGPGL-HYLQEDNPDLI 282
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 107/270 (39%), Gaps = 37/270 (13%)
Query: 34 RLGT-IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGY--DDFDFTE 90
R GT ++FLHG P+ SY +RN++ ++ + C APD +G G SDKP+ Y DD
Sbjct: 30 RDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDLDYFFDD----- 83
Query: 91 NEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILN--SPLTASS 148
H LV+ + + G WA +NP R+ +A + P+
Sbjct: 84 ---HVRYLDAFIEAVGLEEVVLVIHDW-GSALGFHWAKRNPERVKGIACMEFIRPIPTWD 139
Query: 149 PLPGL----FQQLRIPLLGE--FTAQNAIMAERFIEAGSPYV----LKLDKADVYRLPYL 198
P FQ R +G QNA FIE P L + D YR P+L
Sbjct: 140 EWPEFARETFQAFRTADVGRELIIDQNA-----FIEGVLPKCVVRPLTEVEMDHYREPFL 194
Query: 199 ASSGPGFALLEAARKVNFKDISSRIGAGFSS-GSW----DKPVLVAWGISDKYLPQSVAE 253
L ++ + I A + +W P L+ WG +P + A
Sbjct: 195 KPVD-REPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGVLIPPAEAA 253
Query: 254 EFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 283
+ PN + + G H QED P+ +
Sbjct: 254 RLAESLPNCKTVDIGPGL-HYLQEDNPDLI 282
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 108/281 (38%), Gaps = 48/281 (17%)
Query: 34 RLGT-IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGY--DDFDFTE 90
R GT ++FLHG P+ SY +RN++ ++ + C APD +G G SDKP+ Y DD
Sbjct: 30 RDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDLDYFFDD----- 83
Query: 91 NEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILNSPLTASSPL 150
H LV+ + + G WA +NP R+ +A + P+
Sbjct: 84 ---HVRYLDAFIEALGLEEVVLVIHDW-GSALGFHWAKRNPERVKGIACMEF----IRPI 135
Query: 151 PG---------------------LFQQLRIPLLGE--FTAQNAIMAERFIEAGSPYVLKL 187
P FQ R +G QNA + ER + G L
Sbjct: 136 PTWDEFHHTEVAEEQDHAEAARETFQAFRTADVGRELIIDQNAFI-ERVLPGGVVRPLTE 194
Query: 188 DKADVYRLPYLASSGPGFALLEAARKVNFKDISSRIGAGFSS-GSW----DKPVLVAWGI 242
+ D YR P+L L ++ + I A + +W P L+ WG
Sbjct: 195 VEMDHYREPFLKPVD-REPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGT 253
Query: 243 SDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 283
+P + A + PN + + G H QED P+ +
Sbjct: 254 PGALIPPAEAARLAESLPNCKTVDIGPGL-HYLQEDNPDLI 293
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 108/281 (38%), Gaps = 48/281 (17%)
Query: 34 RLGT-IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGY--DDFDFTE 90
R GT ++FLHG P+ SY +RN++ ++ + C APD +G G SDKP+ Y DD
Sbjct: 30 RDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDLDYFFDD----- 83
Query: 91 NEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILNSPLTASSPL 150
H LV+ + + G WA +NP R+ +A + P+
Sbjct: 84 ---HVRYLDAFIEALGLEEVVLVIHDW-GSALGFHWAKRNPERVKGIACMEF----IRPI 135
Query: 151 PG---------------------LFQQLRIPLLGE--FTAQNAIMAERFIEAGSPYVLKL 187
P FQ R +G QNA + ER + G L
Sbjct: 136 PTWDEFHHTEVAEEQDHAEAARETFQAFRTADVGRELIIDQNAFI-ERVLPGGVVRPLTE 194
Query: 188 DKADVYRLPYLASSGPGFALLEAARKVNFKDISSRIGAGFSS-GSW----DKPVLVAWGI 242
+ D YR P+L L ++ + I A + +W P L+ WG
Sbjct: 195 VEMDHYREPFLKPVD-REPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGT 253
Query: 243 SDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKV 283
+P + A + PN + + G H QED P+ +
Sbjct: 254 PGALIPPAEAARLAESLPNCKTVDIGPGL-HYLQEDNPDLI 293
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 34/271 (12%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXX 97
++FLHG P+ SY +RN++ + AG+ APD +G G S KP+ Y D H
Sbjct: 32 VLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPDIEYRLQD------HVAY 85
Query: 98 XXXXXXXXXXYPFFLVVQGFLVGSY-GLTWALKNPSRISKLAILNSPLTASSPLPG---- 152
LV+ + GS G A NP R++ +A + + + P P
Sbjct: 86 XDGFIDALGLDDXVLVIHDW--GSVIGXRHARLNPDRVAAVAFXEALVPPALPXPSYEAX 143
Query: 153 ------LFQQLRIPLLGEFTAQNAIMAERFIEAGSP---YVLKLDKAD--VYRLPYLASS 201
LF+ LR +GE + + F+E P V L +A+ YR P+
Sbjct: 144 GPQLGPLFRDLRTADVGE---KXVLDGNFFVETILPEXGVVRSLSEAEXAAYRAPFPTRQ 200
Query: 202 GPGFALLEAARKVNFKDISSRIGAG-FSSGSW----DKPVLVAWGISDKYLPQSVAEEFQ 256
L+ R+V + A +G W P L+ P+ V +
Sbjct: 201 S-RLPTLQWPREVPIGGEPAFAEAEVLKNGEWLXASPIPKLLFHAEPGALAPKPVVDYLS 259
Query: 257 KGNPNVVKLQMIEGAGHMPQEDWPEKVVDGL 287
+ PN ++++ + H QED P + G+
Sbjct: 260 ENVPN-LEVRFVGAGTHFLQEDHPHLIGQGI 289
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 11/169 (6%)
Query: 37 TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDK-PEKGYDDFDFTENEFHX 95
IVF HG P+ SY +RN+M + G A D +G G SDK G D + + E
Sbjct: 30 AIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGASDKLSPSGPDRYSYGEQRDFL 88
Query: 96 XXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILN---SPLTASSPLP- 151
L G + G WA ++ R+ +A + +P+T + P
Sbjct: 89 FALWDALDLGDHVVLVLHDWG---SALGFDWANQHRDRVQGIAFMEAIVTPMTWADWPPA 145
Query: 152 --GLFQQLRIPLLGEFTAQNAIMAERFIEAGSPYVLKLDKADVYRLPYL 198
G+FQ R P ++ I ER + L ++ + YR P++
Sbjct: 146 VRGVFQGFRSPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFV 194
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 11/169 (6%)
Query: 37 TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDK-PEKGYDDFDFTENEFHX 95
IVF HG P+ SY +RN+M + G A D +G G SDK G D + + E
Sbjct: 32 AIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGASDKLSPSGPDRYSYGEQRDFL 90
Query: 96 XXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRISKLAILN---SPLTASSPLP- 151
L G + G WA ++ R+ +A + +P+T + P
Sbjct: 91 FALWDALDLGDHVVLVLHDWG---SALGFDWANQHRDRVQGIAFMEAIVTPMTWADWPPA 147
Query: 152 --GLFQQLRIPLLGEFTAQNAIMAERFIEAGSPYVLKLDKADVYRLPYL 198
G+FQ R P ++ I ER + L ++ + YR P++
Sbjct: 148 VRGVFQGFRSPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFV 196
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 110/286 (38%), Gaps = 36/286 (12%)
Query: 16 IKSGEYRWFVRETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGF 75
+ G VRE GS L F HG S+S + + ++SD F A D G G
Sbjct: 53 VDIGRITLNVREKGSGPLXL----FFHGITSNSAVFEPLXIRLSDR-FTTIAVDQRGHGL 107
Query: 76 SDKPEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYGLTWALKNPSRI- 134
SDKPE GY+ D+ ++ ++V L +T A K P +
Sbjct: 108 SDKPETGYEANDYADD-------IAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVR 160
Query: 135 SKLAILNSPLTASSPLPGLFQQLRI--PLLGEFTAQNAIMAERFIEAGSPYVLKLDKADV 192
S +AI +P + L L ++ L + A A +A R+ P + AD
Sbjct: 161 SVVAIDFTPYIETEALDALEARVNAGSQLFEDIKAVEAYLAGRY-----PNI----PADA 211
Query: 193 YRLPYLASSGPGFALLEAA-RKVNFKDISSRIGAGFSSG------SWDKPVLVAWGISDK 245
R+ + G+ ++ R + ++ G S KPVL+ G S K
Sbjct: 212 IRI----RAESGYQPVDGGLRPLASSAAXAQTARGLRSDLVPAYRDVTKPVLIVRGESSK 267
Query: 246 YLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKVVDGLRYFF 291
+ + + + P+ + + ++ GA H E PE + + F
Sbjct: 268 LVSAAALAKTSRLRPD-LPVVVVPGADHYVNEVSPEITLKAITNFI 312
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 5 IENKGREYGSYIKSGEYRWFVRETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFH 64
IE KGR +YI G TG I+F HG P+ SY +RN+M + G
Sbjct: 13 IEIKGRRM-AYIDEG--------TGD------PILFQHGNPTSSYLWRNIMPHCAGLG-R 56
Query: 65 CFAPDWLGFGFSDKPE-KGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYG 123
A D +G G SDK + G + + + E+ + LVV + + G
Sbjct: 57 LIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDALWEALDLGDR--VVLVVHDW-GSALG 113
Query: 124 LTWALKNPSRISKLAILNS---PLT-ASSPLP--GLFQQLRIPLLGEFTAQNAIMAERFI 177
WA ++ R+ +A + + P+ A P LFQ R E Q+ + E+ +
Sbjct: 114 FDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVL 173
Query: 178 EAGSPYVLKLDKADVYRLPYLAS 200
L + YR P+LA+
Sbjct: 174 PGLILRPLSEAEMAAYREPFLAA 196
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 5 IENKGREYGSYIKSGEYRWFVRETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFH 64
IE KGR +YI G TG I+F HG P+ SY +RN+M + G
Sbjct: 14 IEIKGRRM-AYIDEG--------TGD------PILFQHGNPTSSYLWRNIMPHCAGLG-R 57
Query: 65 CFAPDWLGFGFSDKPE-KGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYG 123
A D +G G SDK + G + + + E+ + LVV + + G
Sbjct: 58 LIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDALWEALDLGDR--VVLVVHDW-GSALG 114
Query: 124 LTWALKNPSRISKLAILNS---PLT-ASSPLP--GLFQQLRIPLLGEFTAQNAIMAERFI 177
WA ++ R+ +A + + P+ A P LFQ R E Q+ + E+ +
Sbjct: 115 FDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVL 174
Query: 178 EAGSPYVLKLDKADVYRLPYLAS 200
L + YR P+LA+
Sbjct: 175 PGLILRPLSEAEMAAYREPFLAA 197
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 5 IENKGREYGSYIKSGEYRWFVRETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFH 64
IE KGR +YI G TG I+F HG P+ SY +RN+M + G
Sbjct: 14 IEIKGRRM-AYIDEG--------TGD------PILFQHGNPTSSYLWRNIMPHCAGLG-R 57
Query: 65 CFAPDWLGFGFSDKPE-KGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYG 123
A D +G G SDK + G + + + E+ + LVV + + G
Sbjct: 58 LIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDALWEALDLGDR--VVLVVHDW-GSALG 114
Query: 124 LTWALKNPSRISKLAILNS---PLT-ASSPLP--GLFQQLRIPLLGEFTAQNAIMAERFI 177
WA ++ R+ +A + + P+ A P LFQ R E Q+ + E+ +
Sbjct: 115 FDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVL 174
Query: 178 EAGSPYVLKLDKADVYRLPYLAS 200
L + YR P+LA+
Sbjct: 175 PGLILRPLSEAEMAAYREPFLAA 197
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 5 IENKGREYGSYIKSGEYRWFVRETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFH 64
IE KGR +YI G TG I+F HG P+ SY +RN+M + G
Sbjct: 14 IEIKGRRM-AYIDEG--------TGD------PILFQHGNPTSSYLWRNIMPHCAGLG-R 57
Query: 65 CFAPDWLGFGFSDKPE-KGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVGSYG 123
A D +G G SDK + G + + + E+ + LVV + + G
Sbjct: 58 LIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDALWEALDLGDR--VVLVVHDW-GSALG 114
Query: 124 LTWALKNPSRISKLAILNS---PLT-ASSPLP--GLFQQLRIPLLGEFTAQNAIMAERFI 177
WA ++ R+ +A + + P+ A P LFQ R E Q+ + E+ +
Sbjct: 115 FDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVL 174
Query: 178 EAGSPYVLKLDKADVYRLPYLAS 200
L + YR P+LA+
Sbjct: 175 PGLILRPLSEAEMAAYREPFLAA 197
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYD 84
+V +HG P +S+ + + DAG+ D GFG S +P GYD
Sbjct: 27 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYD 73
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide
Hydrolase I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide
Hydrolase I (Steh1)
Length = 328
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 37 TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFG 74
TI+F+HG P YS+R+ M +++ G+ APD G+G
Sbjct: 33 TILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYG 70
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 37 TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFG 74
TI+F+HG P YS+R+ M +++ G+ APD G+G
Sbjct: 33 TILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYG 70
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYD 84
+V +HG P +S+ + + DAG+ D GFG S +P GYD
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYD 72
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYD 84
+V +HG P +S+ + + DAG+ D GFG S +P GYD
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYD 72
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYD 84
+V +HG P +S+ + + DAG+ D GFG S +P GYD
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYD 72
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
Query: 23 WFVRETGSADSRLG----TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDK 78
W +G +R+G ++ LHG P + V ++++ F D G+G+SD
Sbjct: 17 WINTSSGRIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAER-FKVIVADLPGYGWSDM 75
Query: 79 PEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVG---SYGLTWALKNPSRIS 135
PE +T+ + + G G SY L AL +P R+S
Sbjct: 76 PESDEQHTPYTKRAMAKQLIEAMEQLGHVH---FALAGHXRGARVSYRL--ALDSPGRLS 130
Query: 136 KLAILN 141
KLA+L+
Sbjct: 131 KLAVLD 136
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
Length = 319
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 24 FVRETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKG 82
F+ S ++FLHG + SY +R+V+ + C PD +G G S K G
Sbjct: 33 FINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNG 90
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
Length = 318
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 24 FVRETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKG 82
F+ S ++FLHG + SY +R+V+ + C PD +G G S K G
Sbjct: 32 FINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNG 89
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
Length = 310
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 24 FVRETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKG 82
F+ S ++FLHG + SY +R+V+ + C PD +G G S K G
Sbjct: 32 FINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNG 89
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
Length = 319
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 24 FVRETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKG 82
F+ S ++FLHG + SY +R+V+ + C PD +G G S K G
Sbjct: 33 FINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNG 90
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 97/255 (38%), Gaps = 40/255 (15%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXX 97
+V +HG P +S+ ++ G+ D GFG S K GY D+D + H
Sbjct: 26 VVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTGY-DYDTFAADLHTVL 84
Query: 98 XXXXXXXXXXYPFFLVVQGFLVGSYGLT--WALKNPSRISKLAILNSPLTASSPLPGLFQ 155
+V+ GF +G+ L A R++KLA L +S P L Q
Sbjct: 85 ETLDLRD-------VVLVGFSMGTGELARYVARYGHERVAKLAFL------ASLEPFLVQ 131
Query: 156 QLRIPLLGEFTAQN-------AIMAERFIEAGSPY--VLKLDKADVYRLPYLASSGPGFA 206
+ P E Q A +RF Y LD+ R+ A +G
Sbjct: 132 RDDNP---EGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDENLGSRISEQAVTGSWNV 188
Query: 207 LLEAARKVNF-------KDISSRIGAGFSSGSWDKPVLVAWGISDKYLP-QSVAEEFQKG 258
+ +A + +D S + A ++G KP L+ G D LP + A F +
Sbjct: 189 AIGSAPVAAYAVVPAWIEDFRSDVEAVRAAG---KPTLILHGTKDNILPIDATARRFHQA 245
Query: 259 NPNVVKLQMIEGAGH 273
P ++ +EGA H
Sbjct: 246 VPEADYVE-VEGAPH 259
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 13/117 (11%)
Query: 37 TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXX 96
+ HG P YS+R + ++ AG+ A D G+G S P E E +
Sbjct: 41 AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAP---------PEIEEYCM 91
Query: 97 XXXXXXXXXXXYPFFLVVQGFLVGSYG--LTW--ALKNPSRISKLAILNSPLTASSP 149
L F+ +G L W AL P R+ +A LN+P ++P
Sbjct: 92 EVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 148
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
Query: 23 WFVRETGSADSRLG----TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDK 78
W +G +R+G ++ LHG P + V ++++ F D G+G+SD
Sbjct: 17 WINTSSGRIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAER-FKVIVADLPGYGWSDM 75
Query: 79 PEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVG---SYGLTWALKNPSRIS 135
PE +T+ + + G G SY L AL +P R+S
Sbjct: 76 PESDEQHTPYTKRAMAKQLIEAMEQLGHVH---FALAGHNRGARVSYRL--ALDSPGRLS 130
Query: 136 KLAILN 141
KLA+L+
Sbjct: 131 KLAVLD 136
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
Query: 23 WFVRETGSADSRLG----TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDK 78
W +G +R+G ++ LHG P + V ++++ F D G+G+SD
Sbjct: 17 WINTSSGRIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAER-FKVIVADLPGYGWSDM 75
Query: 79 PEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVG---SYGLTWALKNPSRIS 135
PE +T+ + + G G SY L AL +P R+S
Sbjct: 76 PESDEQHTPYTKRAMAKQLIEAMEQLGHVH---FALAGHDRGARVSYRL--ALDSPGRLS 130
Query: 136 KLAILN 141
KLA+L+
Sbjct: 131 KLAVLD 136
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDK 78
+V LHG P YS+R+ + ++ AG+ A D G+G S K
Sbjct: 36 VVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSK 76
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938)
From Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDK 78
+V LHG P YS+R+ + ++ AG+ A D G+G S K
Sbjct: 30 VVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSK 70
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXX 97
+ HG P YS+R + ++ AG+ A D G+G S P E E +
Sbjct: 261 VCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAP---------PEIEEYCME 311
Query: 98 XXXXXXXXXXYPFFLVVQGFLVGSYG--LTW--ALKNPSRISKLAILNSPLTASSP 149
L F+ +G L W AL P R+ +A LN+P ++P
Sbjct: 312 VLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 367
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
Query: 23 WFVRETGSADSRLG----TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDK 78
W +G +R+G ++ LHG P + V ++++ F D G+G+SD
Sbjct: 17 WINTSSGRIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAER-FKVIVADLPGYGWSDM 75
Query: 79 PEKGYDDFDFTENEFHXXXXXXXXXXXXXYPFFLVVQGFLVG---SYGLTWALKNPSRIS 135
PE +T+ + + G G SY L AL +P R+S
Sbjct: 76 PESDEQHTPYTKRAMAKQLIEAMEQLGHVH---FALAGHDRGARVSYRL--ALDSPGRLS 130
Query: 136 KLAILN 141
KLA+L+
Sbjct: 131 KLAVLD 136
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 13/117 (11%)
Query: 37 TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXX 96
+ HG P YS+R + ++ AG+ A D G+G S P E E +
Sbjct: 56 AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAP---------PEIEEYCM 106
Query: 97 XXXXXXXXXXXYPFFLVVQGFLVGSYG--LTW--ALKNPSRISKLAILNSPLTASSP 149
L F+ +G L W AL P R+ +A LN+P ++P
Sbjct: 107 EVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 163
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYD 84
+VF+HG P + ++++ + + DAG+ A D G G S GYD
Sbjct: 22 VVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVWDGYD 68
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 24 FVRETGSADSRLGTIVFLHGAP--SHSYSYRNVMSQMSDAGFHCFAPDWLG 72
+V E+G A + T+V +HG P S S+ + ++ AGFH P++ G
Sbjct: 349 YVLESGRAPTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRG 399
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 24 FVRETGSADSRLGTIVFLHGAP--SHSYSYRNVMSQMSDAGFHCFAPDWLG 72
+V E+G A + T+V +HG P S S+ + ++ AGFH P++ G
Sbjct: 349 YVLESGRAPTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRG 399
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 24 FVRETGSADSRLGTIVFLHGAP--SHSYSYRNVMSQMSDAGFHCFAPDWLG 72
+V E+G A + T+V +HG P S S+ + ++ AGFH P++ G
Sbjct: 349 YVLESGRAPTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRG 399
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 24 FVRETGSADSRLGTIVFLHGAP--SHSYSYRNVMSQMSDAGFHCFAPDWLG 72
+V E+G A + T+V +HG P S S+ + ++ AGFH P++ G
Sbjct: 349 YVLESGRAPTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRG 399
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 24 FVRETGSADSRLGTIVFLHGAP--SHSYSYRNVMSQMSDAGFHCFAPDWLG 72
+V E+G A + T+V +HG P S S+ + ++ AGFH P++ G
Sbjct: 329 YVLESGRAPTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRG 379
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 18/120 (15%)
Query: 177 IEAGSPYVLKLDKADVYRLPYLASSG---PGFALLE--AARKVNFKDISSRIGAGFSSGS 231
+E G P V+ + +Y LP+L + G PGF + K+N + + S
Sbjct: 100 LELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKINAANYA----------S 149
Query: 232 WDKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKVVDGLRYFF 291
P L+ +G D S Q N V+ +++GAGH D PE+ GL F
Sbjct: 150 VKTPALIVYGDQDPMGQTSFEHLKQLPNHRVL---IMKGAGHPCYLDKPEEWHTGLLDFL 206
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 233 DKPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKVVDGLRYFF 291
D PV + WG+ D +P + EF + ++ IE GH + PE +D ++ F
Sbjct: 235 DLPVTMIWGLGDTCVPYAPLIEFVPKYYSNYTMETIEDCGHFLMVEKPEIAIDRIKTAF 293
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 37 TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPE 80
T++ LHG P + + V+ +++ + PD GFG S+KP+
Sbjct: 31 TLLLLHGWPGFWWEWSKVIGPLAEH-YDVIVPDLRGFGDSEKPD 73
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTEN 91
+V +HG P S+ + + +AG+ D GFG S +P +GY+ FT +
Sbjct: 30 VVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYEYDTFTSD 83
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
Length = 271
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTEN 91
++F HG P + + M +S G+ A D GFG SD+P G D F ++
Sbjct: 22 VLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADD 75
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
Length = 271
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTEN 91
++F HG P + + M +S G+ A D GFG SD+P G D F ++
Sbjct: 22 VLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADD 75
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYD 84
+VF HG P + + N M G+ A D G G SD+P G+D
Sbjct: 24 VVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPSTGHD 70
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme
(Pa3053) From Pseudomonas Aeruginosa Pao1 At 1.50 A
Resolution
Length = 315
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 37 TIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKP 79
TI+ HG + ++ + ++DAG+ A D +GF S KP
Sbjct: 48 TILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKP 90
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 16 IKSGEYRWFVRETGSADSRLGTIVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGF 75
+K G FV E GS + + HG P +S+R + ++ AGF A D G+G
Sbjct: 242 VKPGIRLHFV-EMGSGPA----LCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGD 296
Query: 76 SDKP 79
S P
Sbjct: 297 SSSP 300
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase
(Bphd) From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 30 SADSRLGTIVFLHGAP--SHSYS-YRNVMSQMSDAGFHCFAPDWLGFGFSDKPE 80
+ D + +V LHGA +H+ S +R ++ +++ F APD +GFG S+ PE
Sbjct: 24 AGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAE-NFFVVAPDLIGFGQSEYPE 76
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 16/149 (10%)
Query: 1 MISRIENKGREYGSYIKSGEYRWFVRETG--SADSRLGTIVFLHGAPSHSYSY-RNVMSQ 57
M+SR+ R + G++ +V+ T +A ++ LHG P +++Y N+ +
Sbjct: 22 MLSRMPVSSRT----VPFGDHETWVQVTTPENAQPHALPLIVLHGGPGMAHNYVANIAAL 77
Query: 58 MSDAGFHCFAPDWLGFGFSDKPEKGYDDF---DFTENEFHXXXXXXXXXXXXXYPFFLVV 114
+ G D +G G S DF +EFH + V+
Sbjct: 78 ADETGRTVIHYDQVGCGNSTHLPDAPADFWTPQLFVDEFHAVCTALGIER------YHVL 131
Query: 115 QGFLVGSYGLTWALKNPSRISKLAILNSP 143
G G A++ PS + LAI NSP
Sbjct: 132 GQSWGGMLGAEIAVRQPSGLVSLAICNSP 160
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 38 IVFLHGAPSHSYSYRN---VMSQMSDAGFHCFAPDWLGFGFSDKPEK 81
++ +HG+ +Y N + +S + APD +GFGF+D+PE
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTDRPEN 73
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 38 IVFLHGAPSHSYSYRN---VMSQMSDAGFHCFAPDWLGFGFSDKPEK 81
++ +HG+ +Y N + +S + APD +GFGF+D+PE
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTDRPEN 73
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 31 ADSRLGTIVFLHGA--PSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEK-GYDDFD 87
DS +I HG S + ++ + S G++ +APD+ GFG S EK G D D
Sbjct: 23 TDSNRRSIALFHGYSFTSXDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDRGD 82
Query: 88 F 88
Sbjct: 83 L 83
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 234 KPVLVAWGISDKYLPQSVAEEFQKGNPNVVKLQMIEGAGHMPQEDWPEKVV 284
+ L+ WG D +P ++++E+ +L+++EG+GH + PE+ V
Sbjct: 148 QKTLLVWGSKDHVVPIALSKEYASIISGS-RLEIVEGSGHPVYIEKPEEFV 197
>pdb|2VOS|A Chain A, Mycobacterium Tuberculosis Folylpolyglutamate Synthase
Complexed With Adp
Length = 487
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 150 LPGLFQQLRIPLLGEFTAQNAIMAERFIEA--GSPYVLKLDKADVYRLPYLASSGPG 204
L G++ + +PL GE A NA++A +EA G+ +LD D R + A + PG
Sbjct: 282 LGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLD-GDAVRAGFAAVTSPG 337
>pdb|2VOR|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
Folylpolyglutamate Synthase Complexed With Adp And
Amppcp
Length = 487
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 150 LPGLFQQLRIPLLGEFTAQNAIMAERFIEA--GSPYVLKLDKADVYRLPYLASSGPG 204
L G++ + +PL GE A NA++A +EA G+ +LD D R + A + PG
Sbjct: 282 LGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLD-GDAVRAGFAAVTSPG 337
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDF 88
++ +HGAP S+ Y + M+ G D G G S++P++ D+
Sbjct: 31 LMTMHGAPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSKFTIDY 81
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYD 84
IVF HG P ++ S+ + M ++ G+ A D G G S +P G D
Sbjct: 22 IVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPWSGND 68
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 209 EAARKVNFKDISSRIGAGFSSGSWDKPVLVAWGI 242
E +R FKD S+R ++G +D PVL+A I
Sbjct: 115 ELSRMTQFKDKSARYAENINAGLFDYPVLMAADI 148
>pdb|1URZ|A Chain A, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|B Chain B, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|C Chain C, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|D Chain D, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|E Chain E, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|F Chain F, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
Length = 401
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 154 FQQLRIPLLGEFTAQNAIMAERFIEAGSPYVLKLDKADVYRL 195
F L +P E AQN AER +E G+P+ +K+ DVY L
Sbjct: 220 FNDLALPWKHE-GAQNWNNAERLVEFGAPHAVKM---DVYNL 257
>pdb|1K4R|A Chain A, Structure Of Dengue Virus
pdb|1K4R|B Chain B, Structure Of Dengue Virus
pdb|1K4R|C Chain C, Structure Of Dengue Virus
pdb|1N6G|A Chain A, The Structure Of Immature Dengue-2 Prm Particles
pdb|1N6G|B Chain B, The Structure Of Immature Dengue-2 Prm Particles
pdb|1N6G|C Chain C, The Structure Of Immature Dengue-2 Prm Particles
pdb|1NA4|A Chain A, The Structure Of Immature Yellow Fever Virus Particle
pdb|1NA4|B Chain B, The Structure Of Immature Yellow Fever Virus Particle
pdb|1NA4|C Chain C, The Structure Of Immature Yellow Fever Virus Particle
pdb|1SVB|A Chain A, Envelope Glycoprotein From Tick-Borne Encephalitis Virus
Length = 395
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 154 FQQLRIPLLGEFTAQNAIMAERFIEAGSPYVLKLDKADVYRL 195
F L +P E AQN AER +E G+P+ +K+ DVY L
Sbjct: 220 FNDLALPWKHE-GAQNWNNAERLVEFGAPHAVKM---DVYNL 257
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXX 97
++ +HG Y + +M +++ F APD G G S+ P+ GY + +
Sbjct: 33 VMLVHGFGQTWYEWHQLMPELAKR-FTVIAPDLPGLGQSEPPKTGY-----SGEQVAVYL 86
Query: 98 XXXXXXXXXXYPFFLVVQGFLV-GSYGLTWALKNPSRISKLAILNSPL 144
PF LV + +Y + +KN + I++L + +P+
Sbjct: 87 HKLARQFSPDRPFDLVAHDIGIWNTYPMV--VKNQADIARLVYMEAPI 132
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXX 97
++ +HG Y + +M +++ F APD G G S+ P+ GY + +
Sbjct: 33 VMLVHGFGQTWYEWHQLMPELAKR-FTVIAPDLPGLGQSEPPKTGY-----SGEQVAVYL 86
Query: 98 XXXXXXXXXXYPFFLVVQGFLV-GSYGLTWALKNPSRISKLAILNSPL 144
PF LV + +Y + +KN + I++L + +P+
Sbjct: 87 HKLARQFSPDRPFDLVAHDIGIWNTYPMV--VKNQADIARLVYMEAPI 132
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTENEFHXXX 97
++ +HG Y + +M +++ F APD G G S+ P+ GY + +
Sbjct: 33 VMLVHGFGQTWYEWHQLMPELAKR-FTVIAPDLPGLGQSEPPKTGY-----SGEQVAVYL 86
Query: 98 XXXXXXXXXXYPFFLVVQGFLV-GSYGLTWALKNPSRISKLAILNSPL 144
PF LV + +Y + +KN + I++L + +P+
Sbjct: 87 HKLARQFSPDRPFDLVAHDIGIWNTYPMV--VKNQADIARLVYMEAPI 132
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 37 TIVFLHGAPSHSYSYRNVMSQMSDAG--FHCFAPDWLGFGFSDK 78
T+V LHG + S+ N ++ FH A D G+G SDK
Sbjct: 38 TVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDK 81
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 37 TIVFLHGAPSHSYSYRNVMSQMSDAG--FHCFAPDWLGFGFSDK 78
T+V LHG + S+ N ++ FH A D G+G SDK
Sbjct: 58 TVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDK 101
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTEN 91
++F HG + + M +S G+ A D GFG SD+P G D F ++
Sbjct: 22 VLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADD 75
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTEN 91
++F HG + + M +S G+ A D GFG SD+P G D F ++
Sbjct: 22 VLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADD 75
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 38 IVFLHGAPSHSYSYRNVMSQMSDAGFHCFAPDWLGFGFSDKPEKGYDDFDFTEN 91
++F HG + + M +S G+ A D GFG SD+P G D F ++
Sbjct: 22 VLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADD 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,094,168
Number of Sequences: 62578
Number of extensions: 375976
Number of successful extensions: 944
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 109
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)