Query 022535
Match_columns 295
No_of_seqs 184 out of 1694
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 07:05:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 85.7 0.61 2.1E-05 30.4 2.8 30 121-150 16-45 (56)
2 3j21_g 50S ribosomal protein L 80.3 1.1 3.6E-05 28.8 2.3 29 122-150 12-40 (51)
3 1x4u_A Zinc finger, FYVE domai 74.4 1.7 5.9E-05 30.7 2.3 25 123-147 13-39 (84)
4 1wfk_A Zinc finger, FYVE domai 74.2 1.9 6.3E-05 30.9 2.5 26 122-147 7-34 (88)
5 1z2q_A LM5-1; membrane protein 73.3 1.8 6.2E-05 30.6 2.2 26 123-148 20-47 (84)
6 2yw8_A RUN and FYVE domain-con 71.5 2 6.8E-05 30.2 2.1 26 123-148 18-45 (82)
7 3t7l_A Zinc finger FYVE domain 71.3 2.9 9.8E-05 30.0 2.9 25 124-148 20-46 (90)
8 1joc_A EEA1, early endosomal a 68.3 2 6.8E-05 32.9 1.6 25 124-148 69-95 (125)
9 1vfy_A Phosphatidylinositol-3- 61.3 2.3 7.9E-05 29.2 0.7 24 125-148 12-37 (73)
10 1dvp_A HRS, hepatocyte growth 60.7 3.5 0.00012 34.6 1.8 25 124-148 161-187 (220)
11 1y02_A CARP2, FYVE-ring finger 56.8 3.2 0.00011 31.6 0.8 23 125-147 20-44 (120)
12 1wfl_A Zinc finger protein 216 54.4 18 0.00061 24.9 4.2 40 123-163 24-68 (74)
13 3zyq_A Hepatocyte growth facto 54.2 8.6 0.0003 32.3 3.2 25 124-148 164-190 (226)
14 2cr8_A MDM4 protein; ZF-ranbp 52.9 6 0.00021 25.1 1.5 21 125-145 12-32 (53)
15 3u5e_m 60S ribosomal protein L 49.7 7.9 0.00027 29.3 2.1 25 123-147 92-118 (128)
16 2c6a_A Ubiquitin-protein ligas 49.4 7.3 0.00025 24.2 1.4 22 125-146 14-35 (46)
17 2dkt_A Ring finger and CHY zin 48.9 5.8 0.0002 31.0 1.2 45 119-163 78-126 (143)
18 2vrw_B P95VAV, VAV1, proto-onc 36.3 16 0.00055 33.2 2.2 32 121-152 354-393 (406)
19 2dkt_A Ring finger and CHY zin 33.2 7.4 0.00025 30.4 -0.5 35 122-156 96-136 (143)
20 3j20_Y 30S ribosomal protein S 32.9 18 0.00063 22.7 1.4 25 122-146 17-45 (50)
21 1wil_A KIAA1045 protein; ring 30.9 47 0.0016 23.4 3.4 25 123-147 14-38 (89)
22 3mpx_A FYVE, rhogef and PH dom 29.9 11 0.00038 34.5 0.0 26 123-148 374-401 (434)
23 2xzm_5 Ribosomal protein S26E 29.5 13 0.00046 27.8 0.4 21 137-157 19-39 (119)
24 3u5c_a 40S ribosomal protein S 29.3 13 0.00046 27.9 0.4 20 137-156 19-38 (119)
25 2apo_B Ribosome biogenesis pro 29.0 32 0.0011 22.6 2.1 23 122-146 4-26 (60)
26 1wfh_A Zinc finger (AN1-like) 26.5 1.1E+02 0.0037 20.3 4.4 42 122-164 13-59 (64)
27 1wff_A Riken cDNA 2810002D23 p 26.4 70 0.0024 22.5 3.7 41 122-163 23-69 (85)
28 3gj3_B Nuclear pore complex pr 26.3 34 0.0012 19.5 1.7 20 126-145 9-28 (33)
29 2zjr_Z 50S ribosomal protein L 24.0 45 0.0015 21.8 2.2 24 121-146 27-51 (60)
30 1twf_L ABC10-alpha, DNA-direct 23.7 44 0.0015 22.6 2.2 28 122-149 26-56 (70)
31 2pg3_A Queuosine biosynthesis 22.4 18 0.00061 30.0 -0.1 18 134-151 191-208 (232)
32 3lpe_B DNA-directed RNA polyme 21.7 42 0.0014 21.9 1.7 21 125-147 2-22 (59)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=85.69 E-value=0.61 Score=30.36 Aligned_cols=30 Identities=33% Similarity=0.670 Sum_probs=25.3
Q ss_pred CCCceeccccCcccCCCCccCCccCccccc
Q 022535 121 NPRIRYCRKCNQLKPPRCHHCSVCGRCILK 150 (295)
Q Consensus 121 ~~~~~~C~~C~~~kP~Rs~HC~~C~rCV~r 150 (295)
......|.+|...-|+||..|+.||.--+|
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred HhchhhhccccCcCCcccccccCCCCCCCC
Confidence 446789999999999999999999865444
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=80.31 E-value=1.1 Score=28.79 Aligned_cols=29 Identities=24% Similarity=0.550 Sum_probs=24.9
Q ss_pred CCceeccccCcccCCCCccCCccCccccc
Q 022535 122 PRIRYCRKCNQLKPPRCHHCSVCGRCILK 150 (295)
Q Consensus 122 ~~~~~C~~C~~~kP~Rs~HC~~C~rCV~r 150 (295)
...+.|..|....|+++..|+.||.--+|
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred hCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 35689999999999999999999876554
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.37 E-value=1.7 Score=30.71 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=17.8
Q ss_pred CceeccccCcc--cCCCCccCCccCcc
Q 022535 123 RIRYCRKCNQL--KPPRCHHCSVCGRC 147 (295)
Q Consensus 123 ~~~~C~~C~~~--kP~Rs~HC~~C~rC 147 (295)
+...|..|... --.|-|||+.||+-
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcE
Confidence 34567778642 35788999999873
No 4
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=74.16 E-value=1.9 Score=30.92 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=18.9
Q ss_pred CCceeccccCcc--cCCCCccCCccCcc
Q 022535 122 PRIRYCRKCNQL--KPPRCHHCSVCGRC 147 (295)
Q Consensus 122 ~~~~~C~~C~~~--kP~Rs~HC~~C~rC 147 (295)
.+...|..|... --.|-|||+.||+-
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCE
Confidence 445678888742 34688999999873
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=73.31 E-value=1.8 Score=30.59 Aligned_cols=26 Identities=31% Similarity=0.755 Sum_probs=18.9
Q ss_pred CceeccccCcc--cCCCCccCCccCccc
Q 022535 123 RIRYCRKCNQL--KPPRCHHCSVCGRCI 148 (295)
Q Consensus 123 ~~~~C~~C~~~--kP~Rs~HC~~C~rCV 148 (295)
+...|..|... --.|-|||+.||+-+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEE
Confidence 45678888742 246889999998743
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=71.55 E-value=2 Score=30.22 Aligned_cols=26 Identities=35% Similarity=0.833 Sum_probs=18.6
Q ss_pred CceeccccCcc--cCCCCccCCccCccc
Q 022535 123 RIRYCRKCNQL--KPPRCHHCSVCGRCI 148 (295)
Q Consensus 123 ~~~~C~~C~~~--kP~Rs~HC~~C~rCV 148 (295)
+...|..|... --.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 44678888742 346889999998844
No 7
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=71.27 E-value=2.9 Score=29.99 Aligned_cols=25 Identities=32% Similarity=0.800 Sum_probs=17.5
Q ss_pred ceeccccCcc--cCCCCccCCccCccc
Q 022535 124 IRYCRKCNQL--KPPRCHHCSVCGRCI 148 (295)
Q Consensus 124 ~~~C~~C~~~--kP~Rs~HC~~C~rCV 148 (295)
...|..|... --.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 4568888742 245789999998743
No 8
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.28 E-value=2 Score=32.90 Aligned_cols=25 Identities=32% Similarity=0.810 Sum_probs=18.2
Q ss_pred ceeccccCcc--cCCCCccCCccCccc
Q 022535 124 IRYCRKCNQL--KPPRCHHCSVCGRCI 148 (295)
Q Consensus 124 ~~~C~~C~~~--kP~Rs~HC~~C~rCV 148 (295)
...|..|... --.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 4678888742 346899999999743
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=61.30 E-value=2.3 Score=29.16 Aligned_cols=24 Identities=33% Similarity=0.750 Sum_probs=17.3
Q ss_pred eeccccCcc--cCCCCccCCccCccc
Q 022535 125 RYCRKCNQL--KPPRCHHCSVCGRCI 148 (295)
Q Consensus 125 ~~C~~C~~~--kP~Rs~HC~~C~rCV 148 (295)
+.|..|... --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 368888742 346889999999843
No 10
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.65 E-value=3.5 Score=34.60 Aligned_cols=25 Identities=36% Similarity=0.812 Sum_probs=18.5
Q ss_pred ceeccccCcc--cCCCCccCCccCccc
Q 022535 124 IRYCRKCNQL--KPPRCHHCSVCGRCI 148 (295)
Q Consensus 124 ~~~C~~C~~~--kP~Rs~HC~~C~rCV 148 (295)
.+.|..|... --.|-|||+.||+-+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 3689999742 346899999998844
No 11
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=56.76 E-value=3.2 Score=31.57 Aligned_cols=23 Identities=22% Similarity=0.635 Sum_probs=16.8
Q ss_pred eeccccCc--ccCCCCccCCccCcc
Q 022535 125 RYCRKCNQ--LKPPRCHHCSVCGRC 147 (295)
Q Consensus 125 ~~C~~C~~--~kP~Rs~HC~~C~rC 147 (295)
..|..|.. --..|-|||+.||+-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 56777764 234689999999984
No 12
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=54.40 E-value=18 Score=24.87 Aligned_cols=40 Identities=20% Similarity=0.508 Sum_probs=23.9
Q ss_pred CceeccccCcccCCCCccCCccCc--cc---ccccccccccccccc
Q 022535 123 RIRYCRKCNQLKPPRCHHCSVCGR--CI---LKMDHHCVWVVNCVG 163 (295)
Q Consensus 123 ~~~~C~~C~~~kP~Rs~HC~~C~r--CV---~r~DHHCpWi~nCIG 163 (295)
....|..|+..--.=...|+ |+. |- .-=||.|++--.-.|
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~g 68 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEA 68 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhc
Confidence 45689999864222247787 764 32 233888987554443
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.16 E-value=8.6 Score=32.34 Aligned_cols=25 Identities=32% Similarity=0.816 Sum_probs=17.9
Q ss_pred ceeccccCcc--cCCCCccCCccCccc
Q 022535 124 IRYCRKCNQL--KPPRCHHCSVCGRCI 148 (295)
Q Consensus 124 ~~~C~~C~~~--kP~Rs~HC~~C~rCV 148 (295)
...|..|... ---|-|||+.||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEe
Confidence 3579999731 235789999998854
No 14
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=52.86 E-value=6 Score=25.09 Aligned_cols=21 Identities=24% Similarity=0.689 Sum_probs=14.5
Q ss_pred eeccccCcccCCCCccCCccC
Q 022535 125 RYCRKCNQLKPPRCHHCSVCG 145 (295)
Q Consensus 125 ~~C~~C~~~kP~Rs~HC~~C~ 145 (295)
=.|.+|+..-||-..||..|-
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTC
T ss_pred eecccccccCCCccchhHHHH
Confidence 347777777777777776664
No 15
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=49.68 E-value=7.9 Score=29.34 Aligned_cols=25 Identities=40% Similarity=0.938 Sum_probs=21.8
Q ss_pred CceeccccCcccCCCCccCCc--cCcc
Q 022535 123 RIRYCRKCNQLKPPRCHHCSV--CGRC 147 (295)
Q Consensus 123 ~~~~C~~C~~~kP~Rs~HC~~--C~rC 147 (295)
....|.+|...-|+|+..|+. ||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 458999999999999999994 8764
No 16
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=49.36 E-value=7.3 Score=24.17 Aligned_cols=22 Identities=36% Similarity=0.928 Sum_probs=16.8
Q ss_pred eeccccCcccCCCCccCCccCc
Q 022535 125 RYCRKCNQLKPPRCHHCSVCGR 146 (295)
Q Consensus 125 ~~C~~C~~~kP~Rs~HC~~C~r 146 (295)
=.|.+|+..-||-..||..|-.
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTCC
T ss_pred EecccccccCCCccchhhHHHh
Confidence 4588888888888888777643
No 17
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=48.87 E-value=5.8 Score=31.03 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=29.3
Q ss_pred CCCCCceeccccCcccCCC-CccCCccCccccc---ccccccccccccc
Q 022535 119 PLNPRIRYCRKCNQLKPPR-CHHCSVCGRCILK---MDHHCVWVVNCVG 163 (295)
Q Consensus 119 ~~~~~~~~C~~C~~~kP~R-s~HC~~C~rCV~r---~DHHCpWi~nCIG 163 (295)
+......||.+|+.+.+++ ..||..||-|... -=-||.=-|.|+.
T Consensus 78 g~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 78 STLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp CCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 3455667999999886544 5678888877765 1235665555543
No 18
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=36.27 E-value=16 Score=33.18 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=22.6
Q ss_pred CCCceeccccCccc---CCCCccCCccCc-----cccccc
Q 022535 121 NPRIRYCRKCNQLK---PPRCHHCSVCGR-----CILKMD 152 (295)
Q Consensus 121 ~~~~~~C~~C~~~k---P~Rs~HC~~C~r-----CV~r~D 152 (295)
.....+|..|...- -.|-|||+.||. |..+..
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 34678999998532 468899998875 555544
No 19
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=33.16 E-value=7.4 Score=30.44 Aligned_cols=35 Identities=26% Similarity=0.636 Sum_probs=23.4
Q ss_pred CCceeccccC---cccCCCCccCCccCcccc--ccc-cccc
Q 022535 122 PRIRYCRKCN---QLKPPRCHHCSVCGRCIL--KMD-HHCV 156 (295)
Q Consensus 122 ~~~~~C~~C~---~~kP~Rs~HC~~C~rCV~--r~D-HHCp 156 (295)
...-.|..|. +=+..--.||..||.|+. -.| |.|.
T Consensus 96 k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 96 KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp SSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 3445566555 444577889999999964 334 7774
No 20
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.91 E-value=18 Score=22.74 Aligned_cols=25 Identities=20% Similarity=0.724 Sum_probs=15.0
Q ss_pred CCceeccccCc---ccC-CCCccCCccCc
Q 022535 122 PRIRYCRKCNQ---LKP-PRCHHCSVCGR 146 (295)
Q Consensus 122 ~~~~~C~~C~~---~kP-~Rs~HC~~C~r 146 (295)
...++|..|.. ..+ ...++|..|+-
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCGY 45 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSCC
T ss_pred EecccCCCCCCceEEecCCCeEECCCCCC
Confidence 35689999975 111 22456777763
No 21
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=30.91 E-value=47 Score=23.43 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=21.0
Q ss_pred CceeccccCcccCCCCccCCccCcc
Q 022535 123 RIRYCRKCNQLKPPRCHHCSVCGRC 147 (295)
Q Consensus 123 ~~~~C~~C~~~kP~Rs~HC~~C~rC 147 (295)
....|..|..+--.--.-||+|+|+
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rv 38 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRV 38 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSC
T ss_pred CCcccCccccccccceecccccccc
Confidence 4467999999988778889999995
No 22
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=29.92 E-value=11 Score=34.53 Aligned_cols=26 Identities=31% Similarity=0.799 Sum_probs=0.0
Q ss_pred CceeccccCcc--cCCCCccCCccCccc
Q 022535 123 RIRYCRKCNQL--KPPRCHHCSVCGRCI 148 (295)
Q Consensus 123 ~~~~C~~C~~~--kP~Rs~HC~~C~rCV 148 (295)
....|..|... --.|-|||+.||+.+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~ 401 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIV 401 (434)
T ss_dssp ----------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEe
Confidence 34678888742 234789999999843
No 23
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=29.53 E-value=13 Score=27.83 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=15.7
Q ss_pred CCccCCccCcccccccccccc
Q 022535 137 RCHHCSVCGRCILKMDHHCVW 157 (295)
Q Consensus 137 Rs~HC~~C~rCV~r~DHHCpW 157 (295)
+.-||..|++||.+----+.+
T Consensus 19 ~~V~C~nCgr~vPKDKAIKrf 39 (119)
T 2xzm_5 19 RTVPCTNCGRQVAKDKAVKRY 39 (119)
T ss_dssp CEEECTTTCCEEETTTSEECC
T ss_pred ccEeeCCccccCcccceeEEE
Confidence 345799999999986655543
No 24
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=29.31 E-value=13 Score=27.88 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=14.9
Q ss_pred CCccCCccCccccccccccc
Q 022535 137 RCHHCSVCGRCILKMDHHCV 156 (295)
Q Consensus 137 Rs~HC~~C~rCV~r~DHHCp 156 (295)
+.-||..|++||.+----+.
T Consensus 19 ~~V~C~nCgr~vPKDKAIKr 38 (119)
T 3u5c_a 19 KPVRCVNCSKSIPKDKAIKR 38 (119)
T ss_dssp CEEECTTTCCEEEGGGSCEE
T ss_pred ccEeeccccccccccceeeE
Confidence 34579999999998655443
No 25
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=28.95 E-value=32 Score=22.61 Aligned_cols=23 Identities=30% Similarity=0.745 Sum_probs=17.5
Q ss_pred CCceeccccCcccCCCCccCCccCc
Q 022535 122 PRIRYCRKCNQLKPPRCHHCSVCGR 146 (295)
Q Consensus 122 ~~~~~C~~C~~~kP~Rs~HC~~C~r 146 (295)
...+.|..|..+-- .+.|..||.
T Consensus 4 s~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 4 MRMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCCEECTTTCCEES--SSBCSSSCS
T ss_pred hhceeCCCCCCEec--cccCcCCCC
Confidence 35688999987766 677888875
No 26
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.47 E-value=1.1e+02 Score=20.31 Aligned_cols=42 Identities=24% Similarity=0.542 Sum_probs=24.5
Q ss_pred CCceeccccCcccCCCCccCCccCc--cc---cccccccccccccccc
Q 022535 122 PRIRYCRKCNQLKPPRCHHCSVCGR--CI---LKMDHHCVWVVNCVGA 164 (295)
Q Consensus 122 ~~~~~C~~C~~~kP~Rs~HC~~C~r--CV---~r~DHHCpWi~nCIG~ 164 (295)
.....|..|+..-..=...|+ |+. |- .--||.|++--.-.|.
T Consensus 13 ~~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyk~~gr 59 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFKSAGS 59 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEECS-SSCEECTTTCSTTTTTCCCCCSCCCC
T ss_pred CcCCcChhhCCccCccCEEee-cCCEeccccCCcccCCCCchhhHHHH
Confidence 345778888864332257774 654 32 3338888865544443
No 27
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.40 E-value=70 Score=22.51 Aligned_cols=41 Identities=22% Similarity=0.578 Sum_probs=26.0
Q ss_pred CCceeccccCcccCC-CCccCCccCc--ccc---cccccccccccccc
Q 022535 122 PRIRYCRKCNQLKPP-RCHHCSVCGR--CIL---KMDHHCVWVVNCVG 163 (295)
Q Consensus 122 ~~~~~C~~C~~~kP~-Rs~HC~~C~r--CV~---r~DHHCpWi~nCIG 163 (295)
.....|..|+..-.. -..+|+ |+. |-. --||.|++--.-.|
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyK~~g 69 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDYKSAG 69 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCCSSSC
T ss_pred ccCccchhhCCeecccCCeEcC-CCCEecccCCCccCCCCcchhhHHH
Confidence 345789999865554 367786 654 433 34899987544333
No 28
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=26.28 E-value=34 Score=19.50 Aligned_cols=20 Identities=25% Similarity=0.708 Sum_probs=14.1
Q ss_pred eccccCcccCCCCccCCccC
Q 022535 126 YCRKCNQLKPPRCHHCSVCG 145 (295)
Q Consensus 126 ~C~~C~~~kP~Rs~HC~~C~ 145 (295)
-|..|-..-++.+.+|..|+
T Consensus 9 ~C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 9 DCDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp ECTTTCCEECTTCSBCTTTC
T ss_pred eCCcccCCCccccCEEcccC
Confidence 47777777777777777765
No 29
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=24.02 E-value=45 Score=21.79 Aligned_cols=24 Identities=38% Similarity=0.948 Sum_probs=16.7
Q ss_pred CCCceeccccCcccCCCCcc-CCccCc
Q 022535 121 NPRIRYCRKCNQLKPPRCHH-CSVCGR 146 (295)
Q Consensus 121 ~~~~~~C~~C~~~kP~Rs~H-C~~C~r 146 (295)
......|..|...+ +.|| |..||.
T Consensus 27 ~p~l~~c~~cG~~~--~pH~vc~~CG~ 51 (60)
T 2zjr_Z 27 APNLTECPQCHGKK--LSHHICPNCGY 51 (60)
T ss_dssp CCCCEECTTTCCEE--CTTBCCTTTCB
T ss_pred CCCceECCCCCCEe--CCceEcCCCCc
Confidence 34567899999775 5555 777763
No 30
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=23.75 E-value=44 Score=22.57 Aligned_cols=28 Identities=25% Similarity=0.562 Sum_probs=19.9
Q ss_pred CCceeccccCcc---cCCCCccCCccCcccc
Q 022535 122 PRIRYCRKCNQL---KPPRCHHCSVCGRCIL 149 (295)
Q Consensus 122 ~~~~~C~~C~~~---kP~Rs~HC~~C~rCV~ 149 (295)
.....|..|... ++..+-||+.||.-|+
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred eEEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 345679999854 5566778999987554
No 31
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=22.40 E-value=18 Score=30.03 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=14.3
Q ss_pred cCCCCccCCccCcccccc
Q 022535 134 KPPRCHHCSVCGRCILKM 151 (295)
Q Consensus 134 kP~Rs~HC~~C~rCV~r~ 151 (295)
++.|..||..|+.|++|.
T Consensus 191 ~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TSCCTTTTSCSHHHHHHH
T ss_pred CCCCCCcCCcCHhHHHHH
Confidence 455568999999999873
No 32
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=21.70 E-value=42 Score=21.88 Aligned_cols=21 Identities=33% Similarity=0.763 Sum_probs=17.0
Q ss_pred eeccccCcccCCCCccCCccCcc
Q 022535 125 RYCRKCNQLKPPRCHHCSVCGRC 147 (295)
Q Consensus 125 ~~C~~C~~~kP~Rs~HC~~C~rC 147 (295)
+-|..|+..++.. -|..|+.|
T Consensus 2 rAC~~C~~v~~~~--~CpnC~~~ 22 (59)
T 3lpe_B 2 RACLKCKYLTNDE--ICPICHSP 22 (59)
T ss_dssp EEETTTCBEESSS--BCTTTCCB
T ss_pred cccccCCcccCCC--CCCCCCCC
Confidence 5699999998887 58888875
Done!