BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022537
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CF7|A Chain A, Structural Basis Of Dna Recognition By The Heterodimeric
           Cell Cycle Transcription Factor E2f-Dp
          Length = 76

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 56/67 (83%), Gaps = 1/67 (1%)

Query: 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSK 186
           R++ SLGLLT KF++L+QEAKDG LDL   A+ L V QKRRIYDITNVLEGIGLIEK SK
Sbjct: 7   RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSK 66

Query: 187 NHIRWKG 193
           N I+WKG
Sbjct: 67  NSIQWKG 73


>pdb|2AZE|B Chain B, Structure Of The Rb C-Terminal Domain Bound To An E2f1-Dp1
           Heterodimer
          Length = 106

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 29/51 (56%)

Query: 234 IRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDEN 284
           +R L E+ + Q+  ++T +D+ S+     Q ++ IKAP  + ++  D  EN
Sbjct: 36  LRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDSSEN 86


>pdb|1CF7|B Chain B, Structural Basis Of Dna Recognition By The Heterodimeric
           Cell Cycle Transcription Factor E2f-Dp
          Length = 95

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 165 KRRIYDITNVLEGIGLIEKTSKNHIRWKG 193
           +RR+YD  NVL  + +I K  K  I+W G
Sbjct: 61  RRRVYDALNVLMAMNIISK-EKKEIKWIG 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.129    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,817,706
Number of Sequences: 62578
Number of extensions: 292915
Number of successful extensions: 683
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 13
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)