Query 022537
Match_columns 295
No_of_seqs 204 out of 459
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 07:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aze_B Transcription factor E2 100.0 9.9E-32 3.4E-36 219.1 9.4 94 202-295 4-99 (106)
2 1cf7_A Protein (transcription 100.0 4.3E-30 1.5E-34 198.5 7.2 73 123-195 2-75 (76)
3 1cf7_B Protein (transcription 99.4 1.2E-13 4.2E-18 110.9 5.5 35 162-197 58-92 (95)
4 2xvc_A ESCRT-III, SSO0910; cel 94.5 0.044 1.5E-06 40.5 4.4 44 138-182 13-56 (59)
5 1qgp_A Protein (double strande 94.0 0.085 2.9E-06 39.6 5.3 55 138-192 17-72 (77)
6 3deu_A Transcriptional regulat 93.8 0.68 2.3E-05 37.7 10.9 37 149-185 66-102 (166)
7 1qbj_A Protein (double-strande 93.5 0.12 4.1E-06 39.4 5.3 57 137-193 12-69 (81)
8 1oyi_A Double-stranded RNA-bin 93.4 0.14 4.7E-06 39.8 5.6 62 130-194 12-73 (82)
9 1r7j_A Conserved hypothetical 93.1 0.35 1.2E-05 37.4 7.6 81 135-226 8-90 (95)
10 2heo_A Z-DNA binding protein 1 93.0 0.16 5.6E-06 36.7 5.3 51 136-187 11-61 (67)
11 3eco_A MEPR; mutlidrug efflux 92.7 0.77 2.6E-05 35.4 9.1 46 139-184 35-80 (139)
12 3r0a_A Putative transcriptiona 92.4 0.84 2.9E-05 36.2 9.2 46 139-184 30-75 (123)
13 2oqg_A Possible transcriptiona 92.4 1.1 3.8E-05 33.8 9.5 50 139-191 25-74 (114)
14 3jw4_A Transcriptional regulat 91.5 1.1 3.9E-05 35.0 8.9 46 140-185 46-91 (148)
15 2htj_A P fimbrial regulatory p 91.1 0.47 1.6E-05 34.7 5.9 43 139-183 4-46 (81)
16 2a61_A Transcriptional regulat 90.9 1.1 3.8E-05 34.6 8.2 44 140-185 38-81 (145)
17 2gxg_A 146AA long hypothetical 90.6 1.2 4E-05 34.5 8.1 37 149-185 48-84 (146)
18 1ku9_A Hypothetical protein MJ 90.6 2.8 9.6E-05 32.1 10.3 55 139-194 30-87 (152)
19 3qph_A TRMB, A global transcri 90.5 0.12 4.2E-06 48.4 2.7 53 140-195 24-76 (342)
20 3bro_A Transcriptional regulat 89.8 0.78 2.7E-05 35.3 6.4 46 140-185 39-84 (141)
21 1sfx_A Conserved hypothetical 88.8 0.64 2.2E-05 34.1 5.0 45 139-185 24-68 (109)
22 1lj9_A Transcriptional regulat 88.6 2.9 9.9E-05 32.2 8.9 43 140-184 34-76 (144)
23 2fa5_A Transcriptional regulat 88.5 4.3 0.00015 32.0 10.0 37 149-185 61-97 (162)
24 1s3j_A YUSO protein; structura 88.5 1.4 4.9E-05 34.4 7.1 36 150-185 50-85 (155)
25 3bj6_A Transcriptional regulat 88.3 2.9 9.8E-05 32.5 8.8 36 150-185 53-88 (152)
26 3bpv_A Transcriptional regulat 88.3 2.4 8.2E-05 32.3 8.2 43 140-184 34-76 (138)
27 3g3z_A NMB1585, transcriptiona 87.8 1.9 6.5E-05 33.5 7.4 43 140-184 36-78 (145)
28 3u2r_A Regulatory protein MARR 87.6 1.2 4E-05 35.9 6.3 46 140-185 51-96 (168)
29 2qww_A Transcriptional regulat 87.5 5 0.00017 31.3 9.8 42 140-183 46-87 (154)
30 2y75_A HTH-type transcriptiona 87.5 0.99 3.4E-05 35.6 5.7 48 137-184 11-59 (129)
31 3nrv_A Putative transcriptiona 87.5 4.9 0.00017 31.1 9.7 43 140-184 45-87 (148)
32 2eth_A Transcriptional regulat 87.5 1.6 5.4E-05 34.5 6.9 34 151-184 58-91 (154)
33 2frh_A SARA, staphylococcal ac 87.3 1.2 4.1E-05 34.8 6.0 45 140-184 42-86 (127)
34 2hr3_A Probable transcriptiona 87.2 1.7 5.7E-05 33.7 6.8 44 140-184 40-83 (147)
35 3cuo_A Uncharacterized HTH-typ 87.1 1 3.5E-05 32.9 5.2 47 140-188 29-75 (99)
36 2kko_A Possible transcriptiona 87.0 1.6 5.6E-05 33.5 6.6 39 150-188 37-75 (108)
37 1on2_A Transcriptional regulat 86.9 1.2 4E-05 35.1 5.8 36 150-185 21-56 (142)
38 3s2w_A Transcriptional regulat 86.8 2.6 8.8E-05 33.5 7.8 36 150-185 63-98 (159)
39 3oop_A LIN2960 protein; protei 86.6 5.9 0.0002 30.6 9.7 44 140-185 42-85 (143)
40 3tgn_A ADC operon repressor AD 86.6 2.2 7.4E-05 33.0 7.1 43 140-185 43-85 (146)
41 1y0u_A Arsenical resistance op 86.6 0.76 2.6E-05 34.4 4.3 47 140-191 36-82 (96)
42 2d1h_A ST1889, 109AA long hypo 86.3 0.73 2.5E-05 33.8 4.0 37 149-185 34-70 (109)
43 2fbh_A Transcriptional regulat 86.3 4.7 0.00016 30.9 8.9 38 148-185 49-86 (146)
44 4b8x_A SCO5413, possible MARR- 86.1 3.1 0.00011 33.2 8.0 45 141-185 41-85 (147)
45 3jth_A Transcription activator 86.0 3 0.0001 30.9 7.3 39 150-188 35-73 (98)
46 3cjn_A Transcriptional regulat 85.7 7 0.00024 30.8 9.8 36 149-184 64-99 (162)
47 1ub9_A Hypothetical protein PH 85.3 1.2 4E-05 32.6 4.7 44 140-185 21-64 (100)
48 3f6o_A Probable transcriptiona 84.8 1.4 4.9E-05 34.2 5.3 50 139-191 22-71 (118)
49 1r1u_A CZRA, repressor protein 84.6 2.1 7.1E-05 32.6 6.0 45 140-187 31-75 (106)
50 2x4h_A Hypothetical protein SS 84.5 1.6 5.4E-05 34.1 5.4 38 148-185 28-65 (139)
51 2bv6_A MGRA, HTH-type transcri 84.4 0.46 1.6E-05 36.9 2.2 37 149-185 49-85 (142)
52 2fbi_A Probable transcriptiona 84.3 3.4 0.00012 31.5 7.2 36 150-185 49-84 (142)
53 2lkp_A Transcriptional regulat 84.2 3 0.0001 32.0 6.8 37 150-186 44-80 (119)
54 3k0l_A Repressor protein; heli 84.2 2.2 7.4E-05 34.1 6.2 37 149-185 58-94 (162)
55 2fu4_A Ferric uptake regulatio 84.0 0.89 3.1E-05 33.0 3.5 47 139-185 21-72 (83)
56 3e6m_A MARR family transcripti 84.0 2.4 8.3E-05 33.8 6.4 36 150-185 66-101 (161)
57 2nyx_A Probable transcriptiona 83.4 2.2 7.5E-05 34.4 6.0 35 150-184 58-92 (168)
58 3rkx_A Biotin-[acetyl-COA-carb 83.3 1.9 6.4E-05 40.1 6.2 57 138-194 6-63 (323)
59 4hbl_A Transcriptional regulat 83.2 11 0.00038 29.4 9.9 36 150-185 54-89 (149)
60 3boq_A Transcriptional regulat 83.1 6.2 0.00021 30.9 8.4 36 149-184 60-95 (160)
61 2p4w_A Transcriptional regulat 82.9 13 0.00043 32.2 11.0 43 140-185 20-62 (202)
62 2xrn_A HTH-type transcriptiona 82.7 5.4 0.00019 34.8 8.6 55 139-194 10-64 (241)
63 1u2w_A CADC repressor, cadmium 82.6 3.3 0.00011 32.5 6.6 46 140-187 47-92 (122)
64 3hsr_A HTH-type transcriptiona 82.6 1.4 4.9E-05 34.3 4.4 38 148-185 47-84 (140)
65 3bdd_A Regulatory protein MARR 82.4 1.8 6E-05 33.2 4.8 36 150-185 44-79 (142)
66 3bja_A Transcriptional regulat 82.1 14 0.00049 27.8 10.8 43 140-184 38-80 (139)
67 3ech_A MEXR, multidrug resista 82.1 11 0.00037 29.1 9.4 44 140-185 42-85 (142)
68 4ham_A LMO2241 protein; struct 81.6 17 0.00059 28.8 10.6 50 136-185 19-72 (134)
69 2rdp_A Putative transcriptiona 81.5 3.1 0.00011 32.3 6.0 35 150-184 55-89 (150)
70 1j5y_A Transcriptional regulat 81.4 2.1 7.1E-05 36.1 5.3 54 138-193 24-78 (187)
71 3ihu_A Transcriptional regulat 81.0 5.8 0.0002 33.7 8.0 56 131-186 15-74 (222)
72 2nnn_A Probable transcriptiona 80.8 2.7 9.4E-05 32.0 5.4 35 150-184 51-85 (140)
73 3fm5_A Transcriptional regulat 80.7 2.2 7.7E-05 33.4 5.0 44 141-185 45-88 (150)
74 2pg4_A Uncharacterized protein 80.7 1.9 6.4E-05 32.0 4.3 53 130-182 8-62 (95)
75 3pqk_A Biofilm growth-associat 80.6 3.2 0.00011 31.1 5.6 45 140-187 28-72 (102)
76 2hzt_A Putative HTH-type trans 80.2 2 6.8E-05 32.9 4.4 37 149-185 25-62 (107)
77 1tbx_A ORF F-93, hypothetical 80.2 6.6 0.00023 28.9 7.2 39 149-187 20-62 (99)
78 2fbk_A Transcriptional regulat 80.0 7.3 0.00025 31.7 8.0 35 151-185 86-120 (181)
79 3gpv_A Transcriptional regulat 79.7 8.2 0.00028 31.8 8.3 39 151-193 16-56 (148)
80 1sfu_A 34L protein; protein/Z- 78.7 5.1 0.00018 30.6 6.1 61 130-192 10-70 (75)
81 2jt1_A PEFI protein; solution 78.5 2.8 9.6E-05 31.6 4.6 56 138-193 7-69 (77)
82 3mq0_A Transcriptional repress 78.3 3 0.0001 37.4 5.5 54 139-194 34-87 (275)
83 2cfx_A HTH-type transcriptiona 78.3 2.6 8.9E-05 33.7 4.7 47 136-184 6-52 (144)
84 2ek5_A Predicted transcription 77.8 13 0.00043 29.9 8.7 52 136-187 9-64 (129)
85 3pfi_A Holliday junction ATP-d 77.6 2.5 8.6E-05 37.5 4.8 55 133-187 261-316 (338)
86 1fxk_C Protein (prefoldin); ar 77.5 7.7 0.00026 31.0 7.3 51 188-238 72-129 (133)
87 1p6r_A Penicillinase repressor 77.5 3.1 0.00011 30.0 4.5 46 138-185 12-61 (82)
88 3by6_A Predicted transcription 77.1 20 0.0007 28.4 9.7 52 136-187 16-71 (126)
89 1mkm_A ICLR transcriptional re 77.0 8.9 0.00031 33.4 8.1 45 139-184 12-56 (249)
90 3nqo_A MARR-family transcripti 76.9 2.4 8.4E-05 35.2 4.3 46 140-185 46-91 (189)
91 2dk5_A DNA-directed RNA polyme 76.6 4.1 0.00014 31.4 5.2 47 138-184 23-69 (91)
92 2fsw_A PG_0823 protein; alpha- 76.5 3.3 0.00011 31.6 4.6 57 126-185 12-73 (107)
93 3kp7_A Transcriptional regulat 76.3 14 0.00049 28.7 8.4 37 148-184 48-84 (151)
94 1a93_B MAX protein, coiled coi 76.2 4 0.00014 27.0 4.2 30 201-230 4-33 (34)
95 2f2e_A PA1607; transcription f 76.1 1.5 5.1E-05 35.8 2.7 57 126-185 11-71 (146)
96 3f6v_A Possible transcriptiona 75.8 5 0.00017 33.1 5.9 52 139-193 62-113 (151)
97 3hh0_A Transcriptional regulat 75.5 7.6 0.00026 32.0 6.9 36 151-192 4-43 (146)
98 3mkl_A HTH-type transcriptiona 75.2 3.3 0.00011 32.0 4.4 39 136-174 8-46 (120)
99 1z7u_A Hypothetical protein EF 74.8 3.1 0.00011 32.1 4.1 36 150-185 34-70 (112)
100 3oou_A LIN2118 protein; protei 74.7 3.2 0.00011 31.4 4.1 42 136-177 6-47 (108)
101 3f3x_A Transcriptional regulat 74.7 3.2 0.00011 32.2 4.2 43 140-185 42-84 (144)
102 1r1t_A Transcriptional repress 74.7 5.5 0.00019 31.5 5.6 38 150-187 58-95 (122)
103 4aik_A Transcriptional regulat 74.7 22 0.00076 28.4 9.4 43 142-185 38-80 (151)
104 1i1g_A Transcriptional regulat 74.7 3.6 0.00012 32.2 4.5 45 138-184 7-51 (141)
105 2cg4_A Regulatory protein ASNC 74.7 3.4 0.00012 33.1 4.5 49 134-184 7-55 (152)
106 2o0y_A Transcriptional regulat 74.7 6.6 0.00023 34.6 6.7 39 149-187 36-74 (260)
107 2wte_A CSA3; antiviral protein 74.5 3.9 0.00013 36.5 5.2 50 136-187 153-202 (244)
108 1yyv_A Putative transcriptiona 74.4 2.3 8E-05 34.2 3.4 60 126-185 22-83 (131)
109 3r4k_A Transcriptional regulat 74.3 12 0.00041 33.0 8.3 47 149-195 19-65 (260)
110 2dbb_A Putative HTH-type trans 74.2 3.3 0.00011 33.1 4.2 50 133-184 7-56 (151)
111 2jsc_A Transcriptional regulat 73.7 2.3 8E-05 33.2 3.2 44 139-185 25-68 (118)
112 1ylf_A RRF2 family protein; st 73.5 5 0.00017 32.7 5.2 47 138-184 17-63 (149)
113 3oio_A Transcriptional regulat 73.5 4.2 0.00014 31.0 4.5 42 135-176 7-48 (113)
114 2w25_A Probable transcriptiona 73.2 4.2 0.00014 32.5 4.7 48 135-184 7-54 (150)
115 3cdh_A Transcriptional regulat 73.0 4.8 0.00016 31.5 4.9 38 148-185 54-91 (155)
116 2p5v_A Transcriptional regulat 72.2 4.3 0.00015 33.0 4.6 50 133-184 8-57 (162)
117 1xn7_A Hypothetical protein YH 72.1 3.8 0.00013 30.8 3.9 45 138-184 5-49 (78)
118 3sxy_A Transcriptional regulat 71.5 9.6 0.00033 32.2 6.8 51 137-187 18-71 (218)
119 2cyy_A Putative HTH-type trans 71.2 4.3 0.00015 32.6 4.3 49 134-184 6-54 (151)
120 2k02_A Ferrous iron transport 71.1 4.3 0.00015 31.5 4.0 46 138-185 5-50 (87)
121 3mn2_A Probable ARAC family tr 71.0 4.4 0.00015 30.5 4.1 41 136-176 3-43 (108)
122 3tqn_A Transcriptional regulat 70.9 9.5 0.00032 29.6 6.1 52 136-187 14-69 (113)
123 2ip2_A Probable phenazine-spec 70.9 3.3 0.00011 36.8 3.8 42 150-191 40-81 (334)
124 3i53_A O-methyltransferase; CO 70.7 3.2 0.00011 37.1 3.7 49 140-191 30-78 (332)
125 2qlz_A Transcription factor PF 70.6 7 0.00024 34.9 5.9 42 139-183 16-57 (232)
126 4fx0_A Probable transcriptiona 69.8 7 0.00024 31.3 5.3 36 149-184 50-85 (148)
127 3c7j_A Transcriptional regulat 69.4 18 0.00063 31.4 8.3 51 136-186 31-84 (237)
128 2pn6_A ST1022, 150AA long hypo 68.7 4.9 0.00017 32.0 4.1 45 138-184 6-50 (150)
129 2h09_A Transcriptional regulat 68.4 9.1 0.00031 30.4 5.6 37 150-186 53-89 (155)
130 3lsg_A Two-component response 68.1 5.7 0.0002 29.6 4.1 42 136-177 3-45 (103)
131 2r3s_A Uncharacterized protein 67.9 3.7 0.00013 36.3 3.5 41 149-190 37-77 (335)
132 2zqm_A Prefoldin beta subunit 67.7 33 0.0011 26.3 8.6 75 159-238 30-111 (117)
133 3k69_A Putative transcription 67.7 6.4 0.00022 32.9 4.7 48 137-184 14-61 (162)
134 1xd7_A YWNA; structural genomi 67.6 44 0.0015 26.8 9.7 48 135-184 9-56 (145)
135 1z91_A Organic hydroperoxide r 67.3 5 0.00017 30.9 3.8 36 150-185 53-88 (147)
136 2vn2_A DNAD, chromosome replic 67.0 5 0.00017 32.0 3.8 37 150-186 50-86 (128)
137 2ia0_A Putative HTH-type trans 67.0 6.3 0.00022 32.8 4.6 50 133-184 15-64 (171)
138 3neu_A LIN1836 protein; struct 66.7 33 0.0011 26.9 8.6 53 135-187 17-73 (125)
139 4a5n_A Uncharacterized HTH-typ 66.6 6.4 0.00022 32.1 4.4 59 126-185 13-74 (131)
140 3gwz_A MMCR; methyltransferase 66.5 4.1 0.00014 37.3 3.6 43 148-190 68-111 (369)
141 1v4r_A Transcriptional repress 66.3 11 0.00038 28.3 5.5 55 133-187 13-71 (102)
142 1uly_A Hypothetical protein PH 66.1 47 0.0016 28.3 10.0 44 138-184 23-66 (192)
143 2zdi_C Prefoldin subunit alpha 65.8 29 0.00099 28.4 8.3 101 138-238 12-139 (151)
144 2g7u_A Transcriptional regulat 65.8 8.9 0.0003 33.7 5.5 37 149-185 27-63 (257)
145 1bl0_A Protein (multiple antib 65.1 5.5 0.00019 31.2 3.6 42 135-176 11-52 (129)
146 2k9s_A Arabinose operon regula 65.1 8.4 0.00029 28.9 4.6 40 136-175 4-44 (107)
147 3lst_A CALO1 methyltransferase 65.1 4.2 0.00014 36.8 3.3 43 148-191 52-94 (348)
148 1qzz_A RDMB, aclacinomycin-10- 64.9 4.8 0.00017 36.2 3.7 49 140-191 41-91 (374)
149 1xmk_A Double-stranded RNA-spe 64.8 13 0.00043 28.2 5.5 56 135-192 11-67 (79)
150 3gp4_A Transcriptional regulat 64.7 24 0.00084 28.8 7.6 34 152-191 3-40 (142)
151 2e1c_A Putative HTH-type trans 64.6 7.2 0.00025 32.5 4.5 50 133-184 25-74 (171)
152 2pex_A Transcriptional regulat 64.3 4.1 0.00014 31.8 2.8 37 149-185 59-95 (153)
153 3df8_A Possible HXLR family tr 63.4 26 0.00088 27.0 7.2 54 130-186 18-78 (111)
154 1wi9_A Protein C20ORF116 homol 63.2 11 0.00038 28.6 4.8 57 136-194 8-66 (72)
155 1jgs_A Multiple antibiotic res 62.4 5.4 0.00019 30.4 3.1 35 150-184 47-81 (138)
156 1okr_A MECI, methicillin resis 62.4 8.8 0.0003 29.1 4.3 45 139-185 14-62 (123)
157 2vz4_A Tipal, HTH-type transcr 62.0 27 0.00091 26.9 7.1 37 152-192 2-40 (108)
158 4dzo_A Mitotic spindle assembl 61.6 30 0.001 28.3 7.5 77 204-280 4-84 (123)
159 2ia2_A Putative transcriptiona 61.2 13 0.00045 32.8 5.8 45 149-195 34-78 (265)
160 1q1h_A TFE, transcription fact 61.1 5.1 0.00018 30.3 2.7 37 148-184 30-66 (110)
161 1fxk_A Prefoldin; archaeal pro 60.5 50 0.0017 24.9 8.3 75 159-238 25-99 (107)
162 2b0l_A GTP-sensing transcripti 60.2 6.3 0.00021 30.6 3.1 38 148-185 39-77 (102)
163 3t8r_A Staphylococcus aureus C 60.1 16 0.00054 29.7 5.6 48 137-184 13-61 (143)
164 1tw3_A COMT, carminomycin 4-O- 59.6 7 0.00024 35.1 3.7 43 149-191 50-92 (360)
165 3k2z_A LEXA repressor; winged 59.5 7.5 0.00026 32.7 3.7 39 147-185 20-58 (196)
166 2qvo_A Uncharacterized protein 58.9 9.6 0.00033 28.2 3.8 36 148-183 27-62 (95)
167 3dcf_A Transcriptional regulat 58.8 9 0.00031 30.4 3.9 41 129-169 29-69 (218)
168 1x19_A CRTF-related protein; m 58.6 7.9 0.00027 34.9 3.9 42 149-191 62-103 (359)
169 3bvo_A CO-chaperone protein HS 58.3 52 0.0018 28.7 9.0 99 129-239 55-176 (207)
170 2v79_A DNA replication protein 57.9 7.5 0.00026 31.8 3.3 40 145-184 45-84 (135)
171 1hsj_A Fusion protein consisti 55.9 8.7 0.0003 35.9 3.8 46 140-185 409-454 (487)
172 3he5_B Synzip2; heterodimeric 55.9 40 0.0014 23.6 6.2 38 202-239 8-45 (52)
173 2wt7_A Proto-oncogene protein 55.4 32 0.0011 24.6 6.0 34 205-238 24-57 (63)
174 3ic7_A Putative transcriptiona 55.2 9.5 0.00033 30.3 3.5 52 136-187 16-71 (126)
175 3hho_A CO-chaperone protein HS 54.3 75 0.0026 26.7 9.1 97 133-241 20-143 (174)
176 1z4h_A TORI, TOR inhibition pr 54.1 8.3 0.00028 27.3 2.6 26 148-173 7-32 (66)
177 3m91_A Proteasome-associated A 54.1 41 0.0014 23.8 6.2 38 203-240 8-45 (51)
178 1p4x_A Staphylococcal accessor 54.1 12 0.00041 33.3 4.3 45 141-185 164-208 (250)
179 3b73_A PHIH1 repressor-like pr 53.3 14 0.00047 29.5 4.1 52 134-187 12-65 (111)
180 3dp7_A SAM-dependent methyltra 53.2 10 0.00035 34.6 3.8 36 149-184 48-83 (363)
181 1r8e_A Multidrug-efflux transp 52.7 98 0.0034 26.6 9.9 40 150-193 4-46 (278)
182 3i4p_A Transcriptional regulat 52.4 13 0.00043 30.4 3.9 46 137-184 5-50 (162)
183 2hs5_A Putative transcriptiona 52.2 52 0.0018 28.4 8.0 49 138-186 35-86 (239)
184 2o03_A Probable zinc uptake re 51.9 21 0.00073 28.2 5.0 46 140-186 16-66 (131)
185 1bia_A BIRA bifunctional prote 51.7 15 0.00051 33.6 4.6 54 138-193 8-62 (321)
186 3fiw_A Putative TETR-family tr 51.3 13 0.00043 31.1 3.8 44 127-170 21-64 (211)
187 2g9w_A Conserved hypothetical 51.3 19 0.00066 28.4 4.7 46 139-185 13-62 (138)
188 1fp2_A Isoflavone O-methyltran 51.2 13 0.00043 33.6 4.0 50 141-191 42-96 (352)
189 2esh_A Conserved hypothetical 51.1 82 0.0028 24.2 8.3 41 141-184 19-68 (118)
190 2jn6_A Protein CGL2762, transp 50.7 6.3 0.00022 29.3 1.6 30 151-180 23-52 (97)
191 2yy0_A C-MYC-binding protein; 50.6 34 0.0012 24.2 5.3 32 204-235 19-50 (53)
192 1hw1_A FADR, fatty acid metabo 50.0 13 0.00044 31.6 3.7 50 136-185 12-65 (239)
193 1mzb_A Ferric uptake regulatio 49.5 19 0.00064 28.7 4.4 46 140-185 23-73 (136)
194 3bni_A Putative TETR-family tr 49.1 9.7 0.00033 31.4 2.7 43 128-170 40-82 (229)
195 2k4b_A Transcriptional regulat 48.8 15 0.00053 28.4 3.6 44 140-185 40-87 (99)
196 1j9i_A GPNU1 DBD;, terminase s 48.4 14 0.00048 26.0 3.1 40 151-193 2-43 (68)
197 3lwf_A LIN1550 protein, putati 48.3 20 0.00067 30.0 4.5 49 136-184 28-77 (159)
198 2wuj_A Septum site-determining 48.0 9.5 0.00032 27.2 2.1 42 190-234 16-57 (57)
199 2kfs_A Conserved hypothetical 47.1 12 0.0004 31.9 2.9 26 148-173 28-53 (148)
200 1t2k_D Cyclic-AMP-dependent tr 46.9 54 0.0018 23.1 6.0 33 206-238 24-56 (61)
201 2qko_A Possible transcriptiona 46.3 16 0.00055 29.3 3.5 42 129-170 26-67 (215)
202 1zg3_A Isoflavanone 4'-O-methy 46.3 16 0.00056 32.9 3.9 44 140-184 35-81 (358)
203 3mcz_A O-methyltransferase; ad 46.1 16 0.00056 32.5 3.9 39 151-190 56-94 (352)
204 2di3_A Bacterial regulatory pr 46.0 16 0.00055 31.3 3.7 46 138-183 11-60 (239)
205 3gbg_A TCP pilus virulence reg 45.9 21 0.00071 30.6 4.4 38 136-173 170-207 (276)
206 2pjp_A Selenocysteine-specific 45.1 34 0.0012 26.7 5.2 56 132-189 63-118 (121)
207 1umq_A Photosynthetic apparatu 44.7 50 0.0017 24.9 5.9 41 131-173 36-76 (81)
208 2zqm_A Prefoldin beta subunit 43.8 54 0.0019 25.1 6.1 32 208-239 74-105 (117)
209 1fp1_D Isoliquiritigenin 2'-O- 43.1 16 0.00056 33.2 3.4 34 151-184 62-101 (372)
210 1r8d_A Transcription activator 43.1 75 0.0026 24.2 6.8 37 152-192 3-41 (109)
211 3hrs_A Metalloregulator SCAR; 43.0 24 0.00083 30.2 4.4 40 147-186 16-55 (214)
212 3gp4_A Transcriptional regulat 43.0 44 0.0015 27.2 5.7 37 202-238 86-122 (142)
213 1q06_A Transcriptional regulat 42.4 1.3E+02 0.0044 24.0 8.8 81 152-239 1-107 (135)
214 3bru_A Regulatory protein, TET 42.3 28 0.00095 27.7 4.3 43 128-170 27-69 (222)
215 2fxa_A Protease production reg 41.8 16 0.00053 31.0 2.9 36 150-185 61-96 (207)
216 1ci6_A Transcription factor AT 41.4 72 0.0025 22.9 6.0 32 206-237 25-56 (63)
217 2obp_A Putative DNA-binding pr 41.3 23 0.00077 27.7 3.5 38 147-184 32-69 (96)
218 1hqc_A RUVB; extended AAA-ATPa 41.3 29 0.001 30.0 4.6 54 133-186 245-300 (324)
219 3u1d_A Uncharacterized protein 41.3 33 0.0011 29.0 4.8 46 140-185 34-80 (151)
220 2v7f_A RPS19, RPS19E SSU ribos 41.2 35 0.0012 28.6 4.9 45 138-185 57-115 (150)
221 2wv0_A YVOA, HTH-type transcri 41.0 42 0.0014 29.2 5.6 51 135-185 14-68 (243)
222 2xdj_A Uncharacterized protein 40.9 71 0.0024 24.5 6.2 36 203-238 26-61 (83)
223 1fxk_A Prefoldin; archaeal pro 40.8 47 0.0016 25.1 5.3 38 201-238 69-106 (107)
224 1sd4_A Penicillinase repressor 40.4 38 0.0013 25.5 4.7 45 139-185 14-62 (126)
225 1p4x_A Staphylococcal accessor 40.4 29 0.00098 30.8 4.5 45 140-184 39-83 (250)
226 4a6d_A Hydroxyindole O-methylt 40.1 29 0.00099 31.6 4.6 46 140-186 33-78 (353)
227 3edp_A LIN2111 protein; APC883 40.0 37 0.0013 29.5 5.1 51 135-185 13-67 (236)
228 1jnm_A Proto-oncogene C-JUN; B 39.9 58 0.002 23.1 5.3 34 205-238 23-56 (62)
229 1ci6_A Transcription factor AT 39.7 67 0.0023 23.1 5.6 34 202-235 28-61 (63)
230 1nkp_B MAX protein, MYC proto- 39.7 49 0.0017 24.5 5.1 34 204-237 47-80 (83)
231 2qc0_A Uncharacterized protein 39.6 27 0.00093 32.7 4.4 38 150-187 310-347 (373)
232 3g7r_A Putative transcriptiona 39.5 26 0.00089 28.5 3.8 44 127-170 31-74 (221)
233 3q8t_A Beclin-1; autophagy, AT 39.4 69 0.0023 24.9 6.0 34 207-240 21-54 (96)
234 3viq_B Mating-type switching p 39.3 20 0.00068 28.0 2.9 30 207-236 4-33 (85)
235 3e6c_C CPRK, cyclic nucleotide 39.3 37 0.0013 28.4 4.8 40 151-191 177-216 (250)
236 2yko_A LINE-1 ORF1P; RNA-bindi 38.0 51 0.0017 30.0 5.7 42 199-240 8-49 (233)
237 2fe3_A Peroxide operon regulat 38.0 42 0.0014 27.0 4.8 46 140-186 27-77 (145)
238 2hxi_A Putative transcriptiona 37.9 29 0.00099 29.6 4.0 43 127-169 25-67 (241)
239 1d5y_A ROB transcription facto 37.5 21 0.00072 30.8 3.1 42 136-177 4-45 (292)
240 3qqa_A CMER; alpha-helical, he 37.5 9.3 0.00032 30.3 0.7 45 125-169 13-57 (216)
241 2dg7_A Putative transcriptiona 37.4 39 0.0013 26.5 4.4 38 133-170 9-46 (195)
242 2id3_A Putative transcriptiona 37.2 12 0.00042 30.7 1.4 42 129-170 38-79 (225)
243 2zkz_A Transcriptional repress 37.0 19 0.00064 27.0 2.4 38 150-188 40-77 (99)
244 4dzn_A Coiled-coil peptide CC- 36.7 78 0.0027 20.3 4.8 26 206-231 4-29 (33)
245 1y6u_A XIS, excisionase from t 36.7 19 0.00064 26.5 2.2 26 148-173 13-38 (70)
246 3nmd_A CGMP dependent protein 36.6 80 0.0027 23.9 5.7 7 207-213 22-28 (72)
247 1gmj_A ATPase inhibitor; coile 36.5 81 0.0028 24.5 5.9 29 212-240 52-80 (84)
248 3p9c_A Caffeic acid O-methyltr 36.4 31 0.0011 31.5 4.2 45 140-184 45-94 (364)
249 2w57_A Ferric uptake regulatio 36.0 32 0.0011 27.9 3.8 46 140-185 22-72 (150)
250 2qtq_A Transcriptional regulat 35.6 43 0.0015 26.2 4.4 42 128-169 13-54 (213)
251 3dv8_A Transcriptional regulat 35.2 24 0.00082 28.5 2.9 39 151-190 169-207 (220)
252 3ppb_A Putative TETR family tr 35.2 44 0.0015 25.6 4.4 40 130-169 8-47 (195)
253 1fxk_C Protein (prefoldin); ar 35.1 80 0.0027 24.9 6.0 33 207-239 91-123 (133)
254 2rae_A Transcriptional regulat 35.0 43 0.0015 26.4 4.3 44 127-170 13-56 (207)
255 3bwg_A Uncharacterized HTH-typ 34.8 55 0.0019 28.3 5.4 50 136-185 10-63 (239)
256 3dkw_A DNR protein; CRP-FNR, H 34.8 43 0.0015 27.1 4.4 38 152-190 179-216 (227)
257 4etp_A Kinesin-like protein KA 34.7 41 0.0014 32.1 4.9 51 206-256 5-59 (403)
258 1tc3_C Protein (TC3 transposas 34.1 21 0.00072 21.8 1.9 27 152-178 22-48 (51)
259 1jko_C HIN recombinase, DNA-in 34.1 26 0.0009 21.9 2.4 22 152-173 22-43 (52)
260 1ft9_A Carbon monoxide oxidati 34.0 55 0.0019 26.7 5.0 36 152-187 164-199 (222)
261 1fx7_A Iron-dependent represso 34.0 50 0.0017 28.3 4.9 35 152-186 25-59 (230)
262 3eet_A Putative GNTR-family tr 33.9 62 0.0021 28.8 5.6 51 135-185 33-87 (272)
263 2gqq_A Leucine-responsive regu 33.9 9.2 0.00031 31.2 0.2 47 135-183 13-59 (163)
264 1fpo_A HSC20, chaperone protei 33.8 2.1E+02 0.0071 23.9 9.0 98 131-240 15-138 (171)
265 2qlz_A Transcription factor PF 33.7 37 0.0013 30.1 4.1 43 149-191 176-218 (232)
266 1fzc_C Fibrin; blood coagulati 33.7 1.3E+02 0.0043 28.3 7.9 76 203-279 17-94 (319)
267 4ev0_A Transcription regulator 33.6 54 0.0018 26.3 4.8 38 151-189 163-200 (216)
268 3uo3_A J-type CO-chaperone JAC 33.6 2.2E+02 0.0075 24.1 11.4 109 126-241 25-148 (181)
269 2zhg_A Redox-sensitive transcr 33.3 2E+02 0.0068 23.5 9.3 40 150-193 10-50 (154)
270 2j5u_A MREC protein; bacterial 33.2 24 0.00081 31.7 2.8 45 206-251 28-73 (255)
271 3f8m_A GNTR-family protein tra 32.7 32 0.0011 30.2 3.5 42 147-188 31-73 (248)
272 3cta_A Riboflavin kinase; stru 32.5 24 0.00081 30.2 2.6 38 148-185 24-61 (230)
273 2yve_A Transcriptional regulat 32.2 46 0.0016 26.2 4.1 37 134-170 7-43 (185)
274 2p5k_A Arginine repressor; DNA 32.2 55 0.0019 21.8 4.0 38 141-184 11-53 (64)
275 2iu5_A DHAS, YCEG, HTH-type dh 32.2 46 0.0016 26.2 4.1 36 134-169 16-51 (195)
276 3qkx_A Uncharacterized HTH-typ 32.1 38 0.0013 25.9 3.5 37 133-169 10-46 (188)
277 3mnl_A KSTR, transcriptional r 32.0 10 0.00035 29.8 0.1 43 128-170 17-59 (203)
278 2xig_A Ferric uptake regulatio 31.9 61 0.0021 26.3 4.9 45 140-185 32-81 (150)
279 3kz9_A SMCR; transcriptional r 31.9 56 0.0019 25.3 4.5 39 132-170 18-56 (206)
280 3mwm_A ZUR, putative metal upt 31.9 51 0.0018 26.4 4.4 45 140-185 19-68 (139)
281 3on4_A Transcriptional regulat 31.6 55 0.0019 25.1 4.4 40 130-169 9-48 (191)
282 3col_A Putative transcription 31.5 37 0.0013 26.1 3.4 41 129-169 8-48 (196)
283 1zk8_A Transcriptional regulat 31.3 44 0.0015 25.8 3.8 42 129-170 6-47 (183)
284 3he0_A Transcriptional regulat 31.3 50 0.0017 25.5 4.1 41 129-169 9-49 (196)
285 2zb9_A Putative transcriptiona 31.2 23 0.00077 28.3 2.1 40 131-170 23-62 (214)
286 2yu3_A DNA-directed RNA polyme 31.1 91 0.0031 24.3 5.5 53 132-184 34-86 (95)
287 3qao_A LMO0526 protein, MERR-l 30.9 1.4E+02 0.0046 26.5 7.4 78 149-230 1-109 (249)
288 2fmy_A COOA, carbon monoxide o 30.7 47 0.0016 27.0 4.0 40 151-191 167-207 (220)
289 3vp5_A Transcriptional regulat 30.4 53 0.0018 26.0 4.2 36 134-169 15-50 (189)
290 3kcc_A Catabolite gene activat 29.6 1E+02 0.0035 26.0 6.1 35 151-185 217-251 (260)
291 2dgc_A Protein (GCN4); basic d 29.6 73 0.0025 23.0 4.4 29 206-234 32-60 (63)
292 3knw_A Putative transcriptiona 29.4 36 0.0012 26.7 3.0 44 127-170 10-53 (212)
293 2iai_A Putative transcriptiona 29.3 42 0.0014 27.4 3.5 36 135-170 34-69 (230)
294 3aqt_A Bacterial regulatory pr 29.3 22 0.00076 29.6 1.8 43 128-170 43-85 (245)
295 1l8d_A DNA double-strand break 29.1 1.1E+02 0.0038 23.3 5.7 38 202-239 8-45 (112)
296 3kkc_A TETR family transcripti 28.9 22 0.00076 27.3 1.6 39 131-169 12-50 (177)
297 3nmd_A CGMP dependent protein 28.8 1.2E+02 0.0043 22.8 5.7 21 214-234 43-63 (72)
298 2qq9_A Diphtheria toxin repres 28.7 91 0.0031 26.7 5.7 38 149-186 22-59 (226)
299 1gd2_E Transcription factor PA 28.5 81 0.0028 23.5 4.6 32 206-237 31-62 (70)
300 3hh0_A Transcriptional regulat 28.2 67 0.0023 26.2 4.5 22 126-147 39-60 (146)
301 3l7w_A Putative uncharacterize 28.1 1.9E+02 0.0066 21.7 7.4 45 140-184 14-59 (108)
302 3ryp_A Catabolite gene activat 28.0 1.1E+02 0.0036 24.4 5.6 38 151-189 167-204 (210)
303 3gpv_A Transcriptional regulat 27.9 58 0.002 26.6 4.1 34 126-162 51-84 (148)
304 2vxz_A Pyrsv_GP04; viral prote 27.7 3E+02 0.01 23.8 8.9 50 138-190 14-63 (165)
305 2ozu_A Histone acetyltransfera 27.7 67 0.0023 30.0 4.8 50 131-183 188-243 (284)
306 3e97_A Transcriptional regulat 27.5 45 0.0015 27.2 3.4 38 151-189 175-212 (231)
307 1zx4_A P1 PARB, plasmid partit 27.4 2.7E+02 0.0092 24.2 8.4 96 129-239 6-102 (192)
308 1nkp_A C-MYC, MYC proto-oncoge 27.2 1.4E+02 0.0046 22.7 5.8 71 163-238 13-86 (88)
309 1sgm_A Putative HTH-type trans 26.9 54 0.0018 25.1 3.5 38 133-170 8-45 (191)
310 2dg8_A Putative TETR-family tr 26.9 52 0.0018 25.8 3.5 38 132-169 10-47 (193)
311 2hku_A A putative transcriptio 26.7 52 0.0018 26.2 3.6 40 129-169 18-57 (215)
312 2oz6_A Virulence factor regula 26.6 44 0.0015 26.6 3.1 38 152-190 165-202 (207)
313 2pjp_A Selenocysteine-specific 26.5 37 0.0013 26.5 2.5 50 137-189 9-58 (121)
314 3bqz_B HTH-type transcriptiona 26.4 54 0.0018 25.3 3.5 36 135-170 6-41 (194)
315 2bgc_A PRFA; bacterial infecti 26.4 39 0.0013 28.1 2.8 35 151-185 169-204 (238)
316 3u06_A Protein claret segregat 26.2 86 0.0029 30.1 5.5 48 208-255 7-58 (412)
317 3ke2_A Uncharacterized protein 26.2 61 0.0021 26.7 3.8 40 141-182 25-64 (117)
318 1g2h_A Transcriptional regulat 26.0 1.3E+02 0.0044 20.7 5.1 37 133-173 18-55 (61)
319 1nlw_A MAD protein, MAX dimeri 25.9 1.2E+02 0.004 22.8 5.1 30 206-235 49-78 (80)
320 3k9t_A Putative peptidase; str 25.9 33 0.0011 33.8 2.6 36 147-182 398-433 (435)
321 1lva_A Selenocysteine-specific 25.9 95 0.0032 27.3 5.4 62 129-190 135-196 (258)
322 3egq_A TETR family transcripti 25.9 53 0.0018 25.1 3.3 36 135-170 8-43 (170)
323 2zcx_A SCO7815, TETR-family tr 25.8 47 0.0016 27.6 3.2 39 132-170 24-62 (231)
324 3to7_A Histone acetyltransfera 25.7 1E+02 0.0036 28.6 5.7 53 131-187 183-241 (276)
325 2qwt_A Transcriptional regulat 25.6 92 0.0031 24.6 4.8 35 134-169 16-50 (196)
326 3oja_A Leucine-rich immune mol 25.5 1E+02 0.0035 29.0 5.9 18 221-238 459-476 (487)
327 2opt_A Actii protein; helical 25.4 65 0.0022 27.4 4.1 43 128-170 3-45 (234)
328 1l8d_A DNA double-strand break 25.3 1.4E+02 0.0049 22.7 5.7 33 206-238 66-98 (112)
329 2hxo_A Putative TETR-family tr 25.3 91 0.0031 26.3 5.0 42 129-170 14-55 (237)
330 4aci_A HTH-type transcriptiona 25.3 30 0.001 26.9 1.8 44 127-170 10-53 (191)
331 2w83_C C-JUN-amino-terminal ki 25.3 65 0.0022 24.7 3.6 27 208-234 48-74 (77)
332 2zcw_A TTHA1359, transcription 25.2 48 0.0016 26.6 3.1 39 152-191 147-185 (202)
333 3mvp_A TETR/ACRR transcription 25.2 47 0.0016 26.1 2.9 43 128-170 23-65 (217)
334 3oja_B Anopheles plasmodium-re 25.1 1.2E+02 0.004 29.1 6.3 29 212-240 538-566 (597)
335 3e7l_A Transcriptional regulat 25.1 81 0.0028 21.8 3.9 40 133-174 16-55 (63)
336 2pq8_A Probable histone acetyl 25.0 46 0.0016 31.0 3.2 49 131-183 183-237 (278)
337 3q0w_A HTH-type transcriptiona 25.0 50 0.0017 27.0 3.2 42 129-170 42-83 (236)
338 1ug2_A 2610100B20RIK gene prod 24.9 2.6E+02 0.0089 22.2 7.2 39 140-178 44-87 (95)
339 2g7s_A Transcriptional regulat 24.8 51 0.0018 25.2 3.1 37 134-170 11-47 (194)
340 3ra3_A P1C; coiled coil domain 24.8 45 0.0015 20.7 2.1 22 216-237 5-26 (28)
341 4emc_A Monopolin complex subun 24.6 1.2E+02 0.0042 26.8 5.7 35 206-240 22-56 (190)
342 3eqx_A FIC domain containing t 24.6 70 0.0024 30.1 4.5 36 150-185 310-345 (373)
343 3m9b_A Proteasome-associated A 24.6 75 0.0026 29.2 4.5 38 203-240 53-90 (251)
344 2dk8_A DNA-directed RNA polyme 24.5 1.9E+02 0.0065 22.0 6.1 61 133-193 12-73 (81)
345 2lw1_A ABC transporter ATP-bin 24.5 1E+02 0.0035 23.2 4.6 27 209-235 20-46 (89)
346 3lwj_A Putative TETR-family tr 24.5 43 0.0015 26.1 2.6 41 130-170 11-51 (202)
347 1zyb_A Transcription regulator 24.5 1.1E+02 0.0036 25.2 5.1 38 152-190 187-224 (232)
348 3la7_A Global nitrogen regulat 24.3 93 0.0032 25.9 4.8 39 151-190 193-231 (243)
349 1t3j_A Mitofusin 1; coiled coi 24.2 1.2E+02 0.004 24.1 5.0 28 203-230 46-73 (96)
350 2qen_A Walker-type ATPase; unk 24.1 80 0.0027 27.1 4.4 44 138-184 285-333 (350)
351 1q08_A Zn(II)-responsive regul 23.9 86 0.0029 23.1 4.1 30 207-236 42-71 (99)
352 3iwz_A CAP-like, catabolite ac 23.8 52 0.0018 26.7 3.0 38 152-190 188-225 (230)
353 2qib_A TETR-family transcripti 23.7 68 0.0023 26.2 3.8 37 133-169 15-51 (231)
354 2wg5_A General control protein 23.6 1.5E+02 0.0051 23.3 5.6 56 215-280 11-66 (109)
355 3b02_A Transcriptional regulat 23.5 44 0.0015 26.7 2.5 38 152-190 140-177 (195)
356 3rd3_A Probable transcriptiona 23.3 71 0.0024 24.6 3.6 42 129-170 8-49 (197)
357 1hjb_A Ccaat/enhancer binding 23.3 1.9E+02 0.0066 22.2 6.0 31 208-238 40-70 (87)
358 3him_A Probable transcriptiona 23.3 52 0.0018 25.6 2.9 41 129-169 14-54 (211)
359 1t2k_D Cyclic-AMP-dependent tr 23.3 1.9E+02 0.0064 20.2 5.5 27 205-231 30-56 (61)
360 3f1b_A TETR-like transcription 23.2 67 0.0023 24.8 3.5 37 134-170 17-53 (203)
361 2gau_A Transcriptional regulat 23.2 1.1E+02 0.0038 24.8 5.0 40 151-191 180-219 (232)
362 3gwk_C SAG1039, putative uncha 23.0 2.2E+02 0.0074 20.6 6.8 37 154-195 13-49 (98)
363 3on2_A Probable transcriptiona 23.0 71 0.0024 24.5 3.6 38 132-169 13-50 (199)
364 3qbm_A TETR transcriptional re 22.5 73 0.0025 24.5 3.6 37 134-170 10-46 (199)
365 2qby_A CDC6 homolog 1, cell di 22.3 85 0.0029 27.3 4.3 30 155-184 316-348 (386)
366 4fe7_A Xylose operon regulator 22.3 57 0.0019 29.7 3.3 41 135-175 305-345 (412)
367 3ccy_A Putative TETR-family tr 22.2 1.1E+02 0.0037 24.1 4.6 40 131-170 14-53 (203)
368 2zdi_C Prefoldin subunit alpha 22.1 1.5E+02 0.005 24.1 5.5 19 215-233 109-127 (151)
369 2fq4_A Transcriptional regulat 22.1 63 0.0021 25.4 3.1 36 134-169 15-50 (192)
370 3cwr_A Transcriptional regulat 22.1 56 0.0019 25.3 2.8 41 130-170 16-56 (208)
371 3gzi_A Transcriptional regulat 22.0 69 0.0024 25.2 3.4 39 132-170 18-56 (218)
372 3iv1_A Tumor susceptibility ge 22.0 2.4E+02 0.0081 21.6 6.2 33 207-239 42-74 (78)
373 3dew_A Transcriptional regulat 22.0 65 0.0022 24.8 3.2 37 134-170 11-47 (206)
374 2guh_A Putative TETR-family tr 21.9 58 0.002 26.6 3.0 40 131-170 39-78 (214)
375 2g7l_A TETR-family transcripti 21.8 87 0.003 26.6 4.2 41 130-170 18-58 (243)
376 3nrg_A TETR family transcripti 21.7 76 0.0026 24.9 3.6 41 130-170 12-52 (217)
377 3lhq_A Acrab operon repressor 21.7 77 0.0026 24.7 3.6 38 133-170 16-53 (220)
378 1o57_A PUR operon repressor; p 21.7 85 0.0029 28.5 4.3 41 140-180 12-56 (291)
379 3d0s_A Transcriptional regulat 21.6 62 0.0021 26.3 3.1 39 152-191 178-216 (227)
380 1t33_A Putative transcriptiona 21.2 40 0.0014 26.9 1.8 38 132-170 13-50 (224)
381 2qby_B CDC6 homolog 3, cell di 21.2 50 0.0017 29.1 2.6 33 153-185 305-340 (384)
382 3eyy_A Putative iron uptake re 21.0 96 0.0033 24.9 4.1 44 140-185 24-72 (145)
383 3vpr_A Transcriptional regulat 21.0 81 0.0028 24.6 3.6 35 135-169 7-41 (190)
384 3s5r_A Transcriptional regulat 20.9 77 0.0026 24.8 3.5 42 129-170 8-49 (216)
385 2fna_A Conserved hypothetical 20.8 1.7E+02 0.0057 25.1 5.8 46 136-185 291-342 (357)
386 3o60_A LIN0861 protein; PSI, M 20.7 61 0.0021 26.1 2.9 43 127-169 15-58 (185)
387 2rek_A Putative TETR-family tr 20.7 71 0.0024 25.0 3.2 36 134-170 19-54 (199)
388 3ghg_A Fibrinogen alpha chain; 20.6 1.6E+02 0.0055 29.9 6.3 78 201-279 114-215 (562)
389 2ou2_A Histone acetyltransfera 20.6 1E+02 0.0035 28.7 4.6 50 131-183 181-241 (280)
390 1ntc_A Protein (nitrogen regul 20.4 92 0.0031 23.1 3.6 39 134-174 49-87 (91)
391 2y2z_A SIM16, SIMR, putative r 20.3 95 0.0033 27.0 4.2 41 130-170 26-66 (267)
392 2o7t_A Transcriptional regulat 20.2 92 0.0031 24.4 3.8 37 134-170 11-47 (199)
393 1gd2_E Transcription factor PA 20.1 1.9E+02 0.0064 21.4 5.2 28 206-233 38-65 (70)
394 2gkw_A TNF receptor-associated 20.0 1.7E+02 0.0058 24.4 5.6 34 207-240 3-36 (192)
No 1
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=99.97 E-value=9.9e-32 Score=219.12 Aligned_cols=94 Identities=24% Similarity=0.401 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHhhhhcCCCCCCCeEEEEeCCCCCeEEecCC
Q 022537 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDP 281 (295)
Q Consensus 202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted~~n~~~aYVT~eDI~~i~~f~~qTviAIKAP~gT~LEVPdP 281 (295)
+..++..||+|+++|..+|+.||++|++|+++|++|++|+.|.+|+|||++||++|++|++|||||||||+||+||||+|
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpdp 83 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDS 83 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc--eeeeecCCCCC
Q 022537 282 DEN--RILVSSKGNIK 295 (295)
Q Consensus 282 ~e~--~~l~s~~G~I~ 295 (295)
++. ++|+|++|||.
T Consensus 84 ~~~yqi~LkS~~GPId 99 (106)
T 2aze_B 84 SENFQISLKSKQGPID 99 (106)
T ss_dssp SSCEEEEEECSSSCCE
T ss_pred CcceEEEEECCCCCEE
Confidence 874 68999999994
No 2
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.96 E-value=4.3e-30 Score=198.46 Aligned_cols=73 Identities=67% Similarity=0.990 Sum_probs=65.8
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhh-hhhhhhhhhhHhhhccceeccccCceEEecCC
Q 022537 123 LSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (295)
Q Consensus 123 p~~~~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~ 195 (295)
|.+.+|+++||++||++||++|.+++++.+||++||+.|+| +|||||||+|||||||||+|.+||.|+|+|++
T Consensus 2 ~~~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~ 75 (76)
T 1cf7_A 2 PGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG 75 (76)
T ss_dssp ----CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC---
T ss_pred CCCCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCC
Confidence 56789999999999999999999999999999999999999 99999999999999999999999999999976
No 3
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.42 E-value=1.2e-13 Score=110.87 Aligned_cols=35 Identities=37% Similarity=0.678 Sum_probs=31.3
Q ss_pred hhhhhhhhhhhhHhhhccceeccccCceEEecCCCC
Q 022537 162 EVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSL 197 (295)
Q Consensus 162 ~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~~s 197 (295)
..+|||+||++|||++||||+| .|+.|+|+|++.+
T Consensus 58 ~~~rRRvYD~~NVl~a~gii~K-~k~~i~W~g~~~~ 92 (95)
T 1cf7_B 58 KNIRRRVYDALNVLMAMNIISK-EKKEIKWIGLPTN 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHTTSBCC-CSSCEEBCCCC--
T ss_pred ccchhhHHHHHHHHHHhcceec-CCCEEEEecCCcc
Confidence 5599999999999999999999 7999999998753
No 4
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=94.49 E-value=0.044 Score=40.46 Aligned_cols=44 Identities=27% Similarity=0.527 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhcccee
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIE 182 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 182 (295)
++.+++++ +.+|++|+..+|.+++|.|--+||+++=||.=|||.
T Consensus 13 ~~lL~yIr-~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIV-NNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHH-HTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-HcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 45777886 567999999999999999999999999999999986
No 5
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=94.04 E-value=0.085 Score=39.56 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=47.8
Q ss_pred HHHHHHHHhCC-CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEEe
Q 022537 138 RKFINLIQEAK-DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (295)
Q Consensus 138 kkFI~ll~~a~-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~ 192 (295)
.+.+.+|.+.+ +..+...++|+.|+|.++-+.-.+.-||.-|+|.+.+.+.=.|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 66788887665 66799999999999999999999999999999999876666774
No 6
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=93.82 E-value=0.68 Score=37.74 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
++.+.+.++|+.|++.+-.+.-+++-||.-|||+|..
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 3458999999999999999999999999999999874
No 7
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=93.46 E-value=0.12 Score=39.44 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCC-CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEEec
Q 022537 137 TRKFINLIQEAK-DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKG 193 (295)
Q Consensus 137 TkkFI~ll~~a~-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G 193 (295)
-++.+.+|.+.+ +..+...++|+.|||.|+-+.-.+.-||.-|+|.+.+.+.=.|.=
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i 69 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKI 69 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Confidence 466777887554 667999999999999999999999999999999998766677853
No 8
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=93.37 E-value=0.14 Score=39.78 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=53.8
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEEecC
Q 022537 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGS 194 (295)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~ 194 (295)
|-.-..+.++.+.+|+. ++ +...++|.+||++|.-++=.++-||.=|+|.+...+--+|.=.
T Consensus 12 d~~~~~~~~~IL~lL~~--~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~ 73 (82)
T 1oyi_A 12 ERSNAEIVCEAIKTIGI--EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFMT 73 (82)
T ss_dssp -CCSHHHHHHHHHHHSS--ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEESC
T ss_pred ccchHHHHHHHHHHHHH--cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCcceec
Confidence 44556778899999983 45 9999999999999999999999999999999999999999643
No 9
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=93.10 E-value=0.35 Score=37.37 Aligned_cols=81 Identities=10% Similarity=0.154 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE--ecCCCCCCchhHHHHHHHHHH
Q 022537 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW--KGSDSLGTSKLDDQVARLKAE 212 (295)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W--~G~~~s~~~~~~~~~~~Lk~E 212 (295)
.+....+..+. .+ +...++|..+++.-|.+-.+++.|+.-|||++.. +.|.- .|. ++-..+..+..+
T Consensus 8 eIi~~IL~~i~---~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~-~~~~LT~kG~------~~l~~l~~~~~~ 76 (95)
T 1r7j_A 8 EIIQAILEACK---SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEG-KQYMLTKKGE------ELLEDIRKFNEM 76 (95)
T ss_dssp HHHHHHHHHHT---TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEECHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEC-CeeEEChhHH------HHHHHHHHHHHH
Confidence 34444555554 34 8899999999999999999999999999999983 32222 111 122334444455
Q ss_pred HHHHHHHHHHHHHH
Q 022537 213 IESLHAEECRIDDS 226 (295)
Q Consensus 213 l~~L~~~E~~LD~l 226 (295)
+..|...|+.|.++
T Consensus 77 l~~l~~~e~~l~~~ 90 (95)
T 1r7j_A 77 RKNMDQLKEKINSV 90 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554443
No 10
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=93.04 E-value=0.16 Score=36.72 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
.-.+.+++|.+ .+..+.+.++|+.|++.|--++-+++.|+.-|+|....+.
T Consensus 11 ~~~~IL~~L~~-~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G 61 (67)
T 2heo_A 11 LEQKILQVLSD-DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPK 61 (67)
T ss_dssp HHHHHHHHHHH-HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETT
T ss_pred HHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCc
Confidence 34567888875 3356999999999999999999999999999999874333
No 11
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=92.71 E-value=0.77 Score=35.44 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
..+.++...+++.+.+.++|+.+++.+-.+.-+++-||.-|+|++.
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 3566666777678999999999999999999999999999999987
No 12
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=92.41 E-value=0.84 Score=36.17 Aligned_cols=46 Identities=9% Similarity=0.192 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
+.+..+...++..+...++|+.|++.+-.+|-.++.|+..|+|++.
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4566666555433999999999999999999999999999999986
No 13
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=92.40 E-value=1.1 Score=33.79 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
+.+.++. ++.+.+.++|+.|++.+--++-.++.|+.-|+|++.......|
T Consensus 25 ~IL~~L~---~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~ 74 (114)
T 2oqg_A 25 EILTELG---RADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIR 74 (114)
T ss_dssp HHHHHHH---HSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEE
Confidence 3455553 2458999999999999999999999999999998764443333
No 14
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=91.52 E-value=1.1 Score=35.01 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=33.6
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.++...+++.+...++|+.+++.+=-+.-+++-||.-|+|+|..
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 4555556666789999999999999999999999999999999883
No 15
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=91.12 E-value=0.47 Score=34.70 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceec
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (295)
+.+.++... +.+...++|+.|+|.+.-++-.++.|+.-|+|++
T Consensus 4 ~Il~~L~~~--~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRH--NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHS--CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 456666644 4589999999999999999999999999999994
No 16
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=90.94 E-value=1.1 Score=34.57 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=36.9
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.++.. .+.+.+.++|+.|++.+--++-+++-||.-|+|++..
T Consensus 38 iL~~l~~--~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 38 ILQKIYF--EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 3444443 3468999999999999999999999999999999873
No 17
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=90.65 E-value=1.2 Score=34.49 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=34.6
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeec
Confidence 6678999999999999999999999999999999863
No 18
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=90.64 E-value=2.8 Score=32.10 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc---ccCceEEecC
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT---SKNHIRWKGS 194 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~---~KN~i~W~G~ 194 (295)
+.+.++.... +.+.+.++|+.|++.+=-++.+++.||.-|+|++. ......+.+.
T Consensus 30 ~il~~L~~~~-~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 30 AVYAILYLSD-KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp HHHHHHHHCS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 3455553233 56999999999999999999999999999999986 2234455554
No 19
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=90.51 E-value=0.12 Score=48.39 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=42.9
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEEecCC
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~ 195 (295)
++.|+. .+.....++|+.+|+.+.++|++++.|+.-|+|++...+..+|.-.+
T Consensus 24 Y~~Ll~---~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av~ 76 (342)
T 3qph_A 24 YWTLLV---YGPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAYS 76 (342)
T ss_dssp SHHHHH---HHHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEECC
T ss_pred HHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEcC
Confidence 555554 24567788899999999999999999999999999876677777543
No 20
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=89.79 E-value=0.78 Score=35.28 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=40.0
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
++.++...+++.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 5556666665579999999999999999999999999999999863
No 21
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=88.81 E-value=0.64 Score=34.08 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
..+.++.. .+.+...++|+.+++.+--+|.+++.|+.-|+|++..
T Consensus 24 ~il~~l~~--~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 24 RIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 34555543 3458999999999999999999999999999999864
No 22
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=88.59 E-value=2.9 Score=32.21 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=36.6
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.++... +.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 34 iL~~l~~~--~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 34 YLVRVCEN--PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHC--cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 34444443 46899999999999999999999999999999986
No 23
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=88.48 E-value=4.3 Score=31.97 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=33.1
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.+...++|+.|++.+--++-+++.||.-|+|++..
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 4578999999999999999999999999999999863
No 24
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=88.45 E-value=1.4 Score=34.43 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=33.7
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.+.+.++|+.|++.+--++-+++-||.-|+|++..
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 468999999999999999999999999999999873
No 25
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=88.34 E-value=2.9 Score=32.54 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=33.6
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.+...++|+.|++.+--+.-+++-||.-|+|++..
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecC
Confidence 468999999999999999999999999999999863
No 26
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=88.25 E-value=2.4 Score=32.32 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=36.8
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.++.. .+.+...++|+.+++.+--++-+++-||.-|+|++.
T Consensus 34 iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 34 CLLRIHR--EPGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3444444 366899999999999999999999999999999985
No 27
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=87.83 E-value=1.9 Score=33.51 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=36.0
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.++...+ .+.+.++|+.+++.+--++-+++-||.-|+|++.
T Consensus 36 iL~~l~~~~--~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 36 VLYTLATEG--SRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp HHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 334443333 3999999999999999999999999999999986
No 28
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=87.63 E-value=1.2 Score=35.93 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=36.0
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.++...+++.+.+.++|+.|++.+=-+.-+++-||.-|||+|..
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 4444444445689999999999999999999999999999999873
No 29
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=87.52 E-value=5 Score=31.30 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=36.2
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceec
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (295)
.+.++... +.+...++|+.|++.+--+.-+++-||.-|+|++
T Consensus 46 iL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 46 MINVIYST--PGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 44444443 4599999999999999999999999999999999
No 30
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=87.52 E-value=0.99 Score=35.56 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=39.8
Q ss_pred HHHHHHHHHhC-CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 137 TRKFINLIQEA-KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 137 TkkFI~ll~~a-~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
+-+.+.++... +++.+...++|+.++|.++-++.|++.|+..|+|+..
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 33445555544 3678999999999999999999999999999999876
No 31
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=87.46 E-value=4.9 Score=31.10 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=36.2
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.++... +.+.+.++|+.|++.+=-++-+++-||.-|+|++.
T Consensus 45 iL~~l~~~--~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 45 IISVLSSA--SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHS--SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHcC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 44444443 37899999999999999999999999999999987
No 32
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=87.46 E-value=1.6 Score=34.53 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=32.7
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.+.++|+.|++.+--++-+++.||.-|+|++.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 5899999999999999999999999999999986
No 33
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=87.32 E-value=1.2 Score=34.79 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=39.5
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
++.++...+++.+...++|+.|++.+=-+.-+++-||.-|+|++.
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 455555555678999999999999999999999999999999985
No 34
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=87.21 E-value=1.7 Score=33.72 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=37.4
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.++... .+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 40 iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 40 VLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 44444442 456899999999999999999999999999999987
No 35
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=87.10 E-value=1 Score=32.93 Aligned_cols=47 Identities=6% Similarity=0.120 Sum_probs=38.6
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH 188 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~ 188 (295)
.+.++. .++.+.+.++|+.|++.+--++-.++.|+..|+|++.....
T Consensus 29 il~~l~--~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 29 ILCMLS--GSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp HHHHHT--TCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHH--hCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 444443 35579999999999999999999999999999999875433
No 36
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=87.03 E-value=1.6 Score=33.54 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=35.2
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH 188 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~ 188 (295)
+.+.+.++|+.|++.+.-++-.++.|+..|+|++...+.
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 678999999999999999999999999999998765444
No 37
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=86.93 E-value=1.2 Score=35.06 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=33.7
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.+.+.++|+.|+|.+--+.-+++.||.-|+|++..
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEee
Confidence 458999999999999999999999999999999874
No 38
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=86.77 E-value=2.6 Score=33.45 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=33.7
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.+...++|+.+++.+=-+.-+++-||.-|+|++..
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 568999999999999999999999999999999873
No 39
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=86.64 E-value=5.9 Score=30.56 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=37.2
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.++... +.+.+.++|+.+++.+--+.-+++-||.-|+|++..
T Consensus 42 iL~~l~~~--~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 42 VLEGIEAN--EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHH--SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHc--CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 34444433 678999999999999999999999999999999873
No 40
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=86.62 E-value=2.2 Score=33.02 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=35.7
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.++. ..+ +...++|+.|++.+=-+.-+++.||.-|+|++..
T Consensus 43 iL~~l~--~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 43 ILMLLS--EES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHT--TCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHH--hCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 444444 344 9999999999999999999999999999999874
No 41
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=86.56 E-value=0.76 Score=34.40 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=39.0
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
.+.++ .+.+.+.++|+.|++.+--++-.++.|+..|+|++.. ..|..
T Consensus 36 Il~~L----~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l 82 (96)
T 1y0u_A 36 ILRML----DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVV 82 (96)
T ss_dssp HHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred HHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEE
Confidence 44555 3568999999999999999999999999999999876 54443
No 42
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=86.31 E-value=0.73 Score=33.85 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=34.4
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
++.+...++|+.|++.+--+|-+++.|+.-|+|++..
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 4569999999999999999999999999999999874
No 43
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.27 E-value=4.7 Score=30.88 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=34.9
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
..+.+...++|+.|++.+--++.+++-||.-|+|++..
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 45678999999999999999999999999999999873
No 44
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=86.13 E-value=3.1 Score=33.18 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=40.4
Q ss_pred HHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 141 INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 141 I~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.++...+++.+...++|+.|++.+=.+--+++-||.-|+|+|..
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 455566788899999999999999999999999999999999874
No 45
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=85.96 E-value=3 Score=30.94 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=35.3
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH 188 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~ 188 (295)
+.+...++|+.|++.+.-++--++.|+..|+|++.....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQ 73 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 789999999999999999999999999999998764443
No 46
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=85.66 E-value=7 Score=30.78 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=33.7
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 456899999999999999999999999999999986
No 47
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=85.31 E-value=1.2 Score=32.60 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.++.. ++.+.+.++|+.|++.+--+|-.++.||.-|+|++..
T Consensus 21 iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 21 IMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4444432 3468999999999999999999999999999999753
No 48
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=84.84 E-value=1.4 Score=34.24 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
+.+.++. ++.+.+.++|+.|++.+--++-.+++|+..|||++.......+
T Consensus 22 ~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~ 71 (118)
T 3f6o_A 22 AVLGRLS---RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRT 71 (118)
T ss_dssp HHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEE
Confidence 3555565 4678999999999999999999999999999998765444333
No 49
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=84.58 E-value=2.1 Score=32.59 Aligned_cols=45 Identities=9% Similarity=0.274 Sum_probs=37.5
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
.+.++. ++.+.+.++|+.|++.+--++-.++.|+..|+|++...+
T Consensus 31 IL~~L~---~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 31 IMELLS---VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp HHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 445554 355899999999999999999999999999999876443
No 50
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=84.50 E-value=1.6 Score=34.11 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=35.5
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.++.+.+.++|+.|++.+--++-+++.||.-|+|++..
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 56779999999999999999999999999999999875
No 51
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=84.43 E-value=0.46 Score=36.88 Aligned_cols=37 Identities=11% Similarity=0.337 Sum_probs=34.1
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 3468999999999999999999999999999999874
No 52
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=84.26 E-value=3.4 Score=31.50 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=33.4
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.+.+.++|+.+++.+--++-+++-||.-|+|++..
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 358999999999999999999999999999999873
No 53
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=84.23 E-value=3 Score=31.96 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=33.6
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceecccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
+...+.++|+.|++.+--++-.++.||..|+|.+...
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~ 80 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRA 80 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 4689999999999999999999999999999987643
No 54
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=84.19 E-value=2.2 Score=34.08 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=34.1
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.+.+.++|+.|++.+=-+.-+++-||.-|+|+|..
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 3468999999999999999999999999999999873
No 55
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=84.01 E-value=0.89 Score=33.00 Aligned_cols=47 Identities=17% Similarity=0.417 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCCceeHHHHHHHh-----hhhhhhhhhhhhHhhhccceeccc
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
..++++...+++.+.+.++++.| +|.+=-+|=.++.|+..|+|.+..
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 35666654443689999999999 899999999999999999999864
No 56
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=84.00 E-value=2.4 Score=33.77 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=33.8
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.+.+.++|+.+++.+=-+.-+++-||.-|+|+|..
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 478999999999999999999999999999999873
No 57
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=83.40 E-value=2.2 Score=34.45 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=33.0
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 46899999999999999999999999999999985
No 58
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=83.31 E-value=1.9 Score=40.07 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccc-eeccccCceEEecC
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGL-IEKTSKNHIRWKGS 194 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL-IeK~~KN~i~W~G~ 194 (295)
++.+++|.++.+..+.-.++|+.|+|+|+-|+.-++.|+..|+ |+...+.-|+....
T Consensus 6 ~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~ 63 (323)
T 3rkx_A 6 QDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEEEEEC
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEEEecC
Confidence 5688888877778899999999999999999999999999998 66555556887653
No 59
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=83.22 E-value=11 Score=29.41 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=32.8
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.+...++|+.+++.+--+.-+++-||.-|+|++..
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 668999999999999999999999999999999873
No 60
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=83.14 E-value=6.2 Score=30.92 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.+.+.++|+.|++.+--+.-+++-||.-|+|++.
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 346999999999999999999999999999999986
No 61
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=82.91 E-value=13 Score=32.22 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=36.9
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.++. .+.+...++|+.|++.+--+|-.++.|+.-|||++..
T Consensus 20 IL~~L~---~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 20 ILFLLT---KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEe
Confidence 455554 3568999999999999999999999999999999853
No 62
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=82.65 E-value=5.4 Score=34.79 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=42.5
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEEecC
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGS 194 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~ 194 (295)
+.++++... ++.+.+.++|+.+++.|=-+|-+++.|+..|+|++...+.-...|.
T Consensus 10 ~iL~~l~~~-~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~ 64 (241)
T 2xrn_A 10 SIMRALGSH-PHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLGP 64 (241)
T ss_dssp HHHHHHHTC-TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEEEECS
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEECH
Confidence 345556543 3469999999999999999999999999999999975433234453
No 63
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=82.61 E-value=3.3 Score=32.45 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=36.8
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
.+.++.. .+.+.+.++|+.|++.+--++-.++.|+..|+|++...+
T Consensus 47 IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~g 92 (122)
T 1u2w_A 47 ITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEG 92 (122)
T ss_dssp HHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---
T ss_pred HHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4455543 456899999999999999999999999999999876433
No 64
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=82.59 E-value=1.4 Score=34.31 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=35.3
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
..+.+...++|+.|++.+--+.-+++-||.-|+|+|..
T Consensus 47 ~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp TTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecC
Confidence 46789999999999999999999999999999999873
No 65
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=82.42 E-value=1.8 Score=33.16 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=33.6
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.+...++|+.|++.+--++.+++-||.-|+|++..
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 458999999999999999999999999999999874
No 66
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=82.13 E-value=14 Score=27.83 Aligned_cols=43 Identities=9% Similarity=0.263 Sum_probs=36.9
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.++.. .+.+.+.++|+.+++.+--++-+++-||.-|+|++.
T Consensus 38 iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 38 VIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHH--SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 4445544 346999999999999999999999999999999986
No 67
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=82.11 E-value=11 Score=29.08 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=33.0
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.++... +.+...++|+.+++.+=-+.-+++-||.-|+|++..
T Consensus 42 vL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 42 VLKLIDEQ--RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHT--TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 44444443 368999999999999999999999999999999873
No 68
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=81.58 E-value=17 Score=28.79 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+...+.+.+.. .|+..+ ...++|+.|+|+|--+-..+..|+.-|||+...
T Consensus 19 I~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 19 IVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 45555555543 367777 799999999999999999999999999998664
No 69
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=81.49 E-value=3.1 Score=32.27 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=33.0
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
+.+...++|+.|++.+--++-+++.||.-|+|++.
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 46899999999999999999999999999999986
No 70
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=81.40 E-value=2.1 Score=36.11 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccc-eeccccCceEEec
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGL-IEKTSKNHIRWKG 193 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL-IeK~~KN~i~W~G 193 (295)
.+.+.++++.. +.+...++|+.|+|++|-||-=++.|+..|+ |... ..-|.+..
T Consensus 24 ~~Il~~L~~~~-~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~-~~Gy~l~~ 78 (187)
T 1j5y_A 24 KSIVRILERSK-EPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT-PRGYVLAG 78 (187)
T ss_dssp HHHHHHHHHCS-SCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE-TTEEECCT
T ss_pred HHHHHHHHHcC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-CCEEEECC
Confidence 34566666443 4589999999999999999999999999999 8764 34455543
No 71
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=81.00 E-value=5.8 Score=33.73 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=43.2
Q ss_pred CcHHH-HHHHHHHHHHh---CCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecccc
Q 022537 131 SSLGL-LTRKFINLIQE---AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 131 ~SLgl-LTkkFI~ll~~---a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
.++.. +.....+.+.. .|+..+...++|+.|||+|--+=+.+..|+.-|||+....
T Consensus 15 ~~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~ 74 (222)
T 3ihu_A 15 GSASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH 74 (222)
T ss_dssp -CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 34443 33444444433 4788999999999999999999999999999999997644
No 72
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=80.77 E-value=2.7 Score=31.98 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=33.0
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 36899999999999999999999999999999986
No 73
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=80.70 E-value=2.2 Score=33.36 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=35.2
Q ss_pred HHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 141 INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 141 I~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.++...+ +.+.+.++|+.|++.+=-+.-+++-||.-|+|++..
T Consensus 45 L~~l~~~~-~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 45 LVLACEQA-EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp HHHHHHST-TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred HHHHHhCC-CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 33343333 348999999999999999999999999999999863
No 74
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=80.66 E-value=1.9 Score=32.03 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=40.4
Q ss_pred cCcHHHHHHHHHHHHHhCCCC-ceeHHHHHHHhhhhhhh-hhhhhhHhhhcccee
Q 022537 130 DSSLGLLTRKFINLIQEAKDG-TLDLNRTAEVLEVQKRR-IYDITNVLEGIGLIE 182 (295)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g-~ldLn~aA~~L~VqKRR-IYDItNVLEgIGLIe 182 (295)
...++.+.+-|.-++.-...+ .+.+.++|+.|++.+-- ++-+++.||.-|+|+
T Consensus 8 ~~~~g~~~~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 8 RLQFGHLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp GSBHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 345566665544333222223 68999999999999999 999999999999999
No 75
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=80.57 E-value=3.2 Score=31.09 Aligned_cols=45 Identities=13% Similarity=0.297 Sum_probs=37.3
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
.+.++.+ +.+.+.++|+.|++.+-.++-.+..|+..|||++....
T Consensus 28 Il~~L~~---~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (102)
T 3pqk_A 28 LVCTLVE---GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNI 72 (102)
T ss_dssp HHHHHHT---CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4445532 56899999999999999999999999999999876443
No 76
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=80.21 E-value=2 Score=32.91 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=34.7
Q ss_pred CCceeHHHHHHHh-hhhhhhhhhhhhHhhhccceeccc
Q 022537 149 DGTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 149 ~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
++.+...++|+.+ ++.+..++..++.||.-|||++..
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 5778999999999 999999999999999999999874
No 77
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=80.17 E-value=6.6 Score=28.94 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=34.1
Q ss_pred CCceeHHHH----HHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 149 DGTLDLNRT----AEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 149 ~g~ldLn~a----A~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
.+.+...++ |+.+++.+--++-+++-||.-|+|++....
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 456788888 899999999999999999999999987433
No 78
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=79.95 E-value=7.3 Score=31.70 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=33.1
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.+.++|+.|++.+--++-+++-||.-|+|++..
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 58999999999999999999999999999999873
No 79
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=79.73 E-value=8.2 Score=31.76 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=27.7
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhcccee--ccccCceEEec
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIE--KTSKNHIRWKG 193 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~~KN~i~W~G 193 (295)
.+.+.++|+.+||..+-|- -.|..|||. +...|.|+.-.
T Consensus 16 ~~~I~evA~~~gvs~~tLR----~Ye~~Gll~p~~r~~~g~R~Y~ 56 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIR----YYDKQGLFPFLQRNEKGDRIFN 56 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHH----HHHHTTCCTTCEECTTCCEEBC
T ss_pred ceeHHHHHHHHCcCHHHHH----HHHHCCCCCCCcCCCCCCeecC
Confidence 5889999999999888432 226788884 44556666643
No 80
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=78.69 E-value=5.1 Score=30.59 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=49.6
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEEe
Q 022537 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (295)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~ 192 (295)
|.....+-+++|..|. +++.+-.+++|.+||+.|+-|==++.-|+.=|.|.+...+--.|.
T Consensus 10 ~~~~~~~v~~~i~~L~--~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~ 70 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLN--TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWF 70 (75)
T ss_dssp SHHHHHHHHHHHHTSC--TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEE
T ss_pred hHHHHHHHHHHHHhCC--CCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCcc
Confidence 3344555566666443 455599999999999999999999999999999999999999995
No 81
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=78.54 E-value=2.8 Score=31.55 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=43.1
Q ss_pred HHHHHHHHhC----CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc---cCceEEec
Q 022537 138 RKFINLIQEA----KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS---KNHIRWKG 193 (295)
Q Consensus 138 kkFI~ll~~a----~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~---KN~i~W~G 193 (295)
++.++++++. .++.+.+.++|+.|||+.--+..-++.||.-|+|.+.. .-.-+|.=
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~~~~~~~ 69 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWRL 69 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEEEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCCcHHHHHH
Confidence 3455555543 36889999999999999888999999999999999873 23456643
No 82
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=78.29 E-value=3 Score=37.43 Aligned_cols=54 Identities=13% Similarity=0.300 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEEecC
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGS 194 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~ 194 (295)
..+++|...+ +.+.+.++|+.+|+.|=-+|-+++.|+..|++++..... ...|.
T Consensus 34 ~IL~~l~~~~-~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~-Y~LG~ 87 (275)
T 3mq0_A 34 RILDLVAGSP-RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGT-LRIGP 87 (275)
T ss_dssp HHHHHHHHCS-SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSE-EEECT
T ss_pred HHHHHHhhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCc-EEehH
Confidence 3566665554 569999999999999999999999999999999986333 33563
No 83
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=78.28 E-value=2.6 Score=33.70 Aligned_cols=47 Identities=13% Similarity=0.311 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
+-.+.+.+++.. +.+...++|+.||+.+..+...++-|+.-|+|.+.
T Consensus 6 ~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKD--SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHC--SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 345778888754 66999999999999999999999999999999874
No 84
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=77.81 E-value=13 Score=29.87 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=41.2
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
+...+...+.. .|+..+ ...++|+.|+|+|--+-..++.|+.-|+|+.....
T Consensus 9 i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~ 64 (129)
T 2ek5_A 9 IASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGI 64 (129)
T ss_dssp HHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCC
Confidence 33444454543 366777 89999999999999999999999999999987543
No 85
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=77.62 E-value=2.5 Score=37.48 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhh-HhhhccceeccccC
Q 022537 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITN-VLEGIGLIEKTSKN 187 (295)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItN-VLEgIGLIeK~~KN 187 (295)
|..+-++++..+....++.+.+..+|+.||+.++.+|+.+. .|...|+|.+..+.
T Consensus 261 l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 261 FDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp CCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCc
Confidence 34455777777766666789999999999999999999999 99999999887544
No 86
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=77.48 E-value=7.7 Score=31.05 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=29.9
Q ss_pred ceEEecCCCCCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022537 188 HIRWKGSDSLGTS-------KLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (295)
Q Consensus 188 ~i~W~G~~~s~~~-------~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lt 238 (295)
-+.|.|.+..-.- .+..++..|+..++.|......+.+.|..+.+.|+++.
T Consensus 72 V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 72 VIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789996532111 23334455555566666666666666666666666654
No 87
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=77.46 E-value=3.1 Score=30.03 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhh----hhhhhhhhhhHhhhccceeccc
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEV----QKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~V----qKRRIYDItNVLEgIGLIeK~~ 185 (295)
..++.++.. .+.+...++++.|+. .+--+|-+++.|+.-|+|++..
T Consensus 12 ~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 446666765 567999999999984 6788999999999999999875
No 88
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=77.10 E-value=20 Score=28.37 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=42.0
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
+...+...+.. .++..+ ...++|+.|+|++--+-..+..|+.-|+|++....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 71 (126)
T 3by6_A 16 LVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGK 71 (126)
T ss_dssp HHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 44455555543 367778 99999999999999999999999999999987544
No 89
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=76.96 E-value=8.9 Score=33.41 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
+.++++... ++.+.+.++|+.+++.|=-+|-+++.|+..|+|++.
T Consensus 12 ~iL~~l~~~-~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 12 EILDFIVKN-PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHC-SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 345566544 346899999999999999999999999999999997
No 90
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=76.92 E-value=2.4 Score=35.18 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=40.7
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.++...+++.+.+.++|+.|++.+=.+.-+++-||.-|+|++..
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4555666677889999999999999999999999999999999863
No 91
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=76.59 E-value=4.1 Score=31.38 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
..++.++.++.+.-++..++|.++++.+.-+-=|+.-||.-|||.+.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 34777888877777999999999999999999999999999999943
No 92
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=76.55 E-value=3.3 Score=31.56 Aligned_cols=57 Identities=21% Similarity=0.369 Sum_probs=43.3
Q ss_pred CCCCcCcHHHHHHHH----HHHHHhCCCCceeHHHHHHHh-hhhhhhhhhhhhHhhhccceeccc
Q 022537 126 GCRYDSSLGLLTRKF----INLIQEAKDGTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 126 ~~R~d~SLglLTkkF----I~ll~~a~~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.|.....|..+..++ +..+ . .+.+...++++.+ ++.+..++-.++.||.-|||++..
T Consensus 12 ~c~~~~~l~~l~~~~~~~IL~~L--~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 12 ECPVRKSMQIFAGKWTLLIIFQI--N-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp TCHHHHHHHHHTSSSHHHHHHHH--T-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHcCccHHHHHHHH--H-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 454455566555432 2233 2 5779999999999 599999999999999999999874
No 93
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=76.33 E-value=14 Score=28.68 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=33.8
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
..+.+...++|+.+++.+=-+.-+++-||.-|+|++.
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4567999999999999999999999999999999984
No 94
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=76.23 E-value=4 Score=27.03 Aligned_cols=30 Identities=10% Similarity=0.295 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 201 KLDDQVARLKAEIESLHAEECRIDDSIREK 230 (295)
Q Consensus 201 ~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~ 230 (295)
.+....+..++++++|+.+-..|+++|+++
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 455667788999999999999999999864
No 95
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=76.13 E-value=1.5 Score=35.81 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=44.9
Q ss_pred CCCCcCcHHHHHHHH----HHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 126 GCRYDSSLGLLTRKF----INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 126 ~~R~d~SLglLTkkF----I~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.|.....|..+..++ +..+. .+.+...++++.|++.+.-+...++.||.-|||+|..
T Consensus 11 ~c~~~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 11 SCPVARPLDVIGDGWSMLIVRDAF---EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp SCTTTTTHHHHCSSSHHHHHHHHH---TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHhCCchHHHHHHHHH---hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 345566677776442 23332 4678999999999999999999999999999999975
No 96
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=75.81 E-value=5 Score=33.10 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=41.6
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEEec
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKG 193 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G 193 (295)
+.+.+|. .+.+.+.++|+.|++.+--++--+.+|+..|||++.......|.-
T Consensus 62 ~IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~ 113 (151)
T 3f6v_A 62 RLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYR 113 (151)
T ss_dssp HHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEE
Confidence 3455554 466999999999999999999999999999999977555444443
No 97
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=75.47 E-value=7.6 Score=32.00 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=24.9
Q ss_pred ceeHHHHHHHhhhhhh--hhhhhhhHhhhccceec--cccCceEEe
Q 022537 151 TLDLNRTAEVLEVQKR--RIYDITNVLEGIGLIEK--TSKNHIRWK 192 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKR--RIYDItNVLEgIGLIeK--~~KN~i~W~ 192 (295)
.+.+.++|+.+||..+ |.| |..|||.- ...|.++.-
T Consensus 4 ~~tI~evA~~~Gvs~~tLR~y------e~~GLl~p~~r~~~g~R~Y 43 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYY------DKINLLKPSDYTEGGHRLY 43 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHHH------HHTTSSCCSEECTTSCEEB
T ss_pred CCcHHHHHHHHCcCHHHHHHH------HHCCCCCCCeECCCCCEee
Confidence 4678999999999887 555 56677743 344555553
No 98
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=75.25 E-value=3.3 Score=32.00 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhH
Q 022537 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNV 174 (295)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNV 174 (295)
+..++++++.......++|.++|+.+++.+|.|+-+..-
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 567899999999888999999999999999999877654
No 99
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=74.81 E-value=3.1 Score=32.07 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=33.8
Q ss_pred CceeHHHHHHHh-hhhhhhhhhhhhHhhhccceeccc
Q 022537 150 GTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 150 g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.+...++|+.| ++.+--++.+++.||.-|||++..
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 568999999999 999999999999999999999874
No 100
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=74.73 E-value=3.2 Score=31.36 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhh
Q 022537 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEG 177 (295)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEg 177 (295)
+..++++++.+.....+++.++|+.+|+.+|.|+-+..-.-|
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G 47 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMG 47 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 456788899888888899999999999999999988765443
No 101
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=74.73 E-value=3.2 Score=32.16 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=36.6
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.++...++ .+.++|+.+++.+=-+.-+++-||.-|+|++..
T Consensus 42 iL~~l~~~~~---~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 42 ILKATSEEPR---SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHHHHHSCE---EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCC---CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 4455555443 999999999999999999999999999999873
No 102
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=74.71 E-value=5.5 Score=31.46 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=34.2
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
+...+.++|+.|++.+--++-.++.||..|+|.+...+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~g 95 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQG 95 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 56899999999999999999999999999999875433
No 103
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=74.71 E-value=22 Score=28.37 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=34.9
Q ss_pred HHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 142 NLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 142 ~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.++...++ .+...++|+.|++.+=.+--+++-||.-|+|+|..
T Consensus 38 ~~L~~~~~-~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 38 YNINRLPP-EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp HHHHHSCT-TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHcCC-CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 33434443 34678999999999999999999999999999873
No 104
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=74.70 E-value=3.6 Score=32.25 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.+.+++. ++.+...++|+.||+.+.-++..++-|+.-|+|.+.
T Consensus 7 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEK--DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 456777764 356799999999999999999999999999999876
No 105
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=74.69 E-value=3.4 Score=33.13 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
..+-.+.+.+++.. +.+...++|+.||+++..++..++-|+.-|+|.+.
T Consensus 7 d~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 7 DNLDRGILEALMGN--ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp CHHHHHHHHHHHHC--TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 34446788888754 67899999999999999999999999999999974
No 106
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=74.67 E-value=6.6 Score=34.63 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=35.7
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
++.+.+.++|+.+++.|--+|-+++.|+..|+|++....
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~ 74 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADG 74 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCC
Confidence 457999999999999999999999999999999997544
No 107
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=74.48 E-value=3.9 Score=36.54 Aligned_cols=50 Identities=16% Similarity=0.344 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
...+.+.++... +.+.+.++|+.|++.|--++-+++.|+..|+|++....
T Consensus 153 ~~~~IL~~L~~~--~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r~ 202 (244)
T 2wte_A 153 EEMKLLNVLYET--KGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKD 202 (244)
T ss_dssp HHHHHHHHHHHH--TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCc
Confidence 445566666543 45899999999999999999999999999999997443
No 108
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=74.39 E-value=2.3 Score=34.20 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=45.6
Q ss_pred CCCCcCcHHHHHHHHH-HHHHhCCCCceeHHHHHHHh-hhhhhhhhhhhhHhhhccceeccc
Q 022537 126 GCRYDSSLGLLTRKFI-NLIQEAKDGTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 126 ~~R~d~SLglLTkkFI-~ll~~a~~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.|.....|..+..++- .++..-..+.+...++++.| ++.+.-+...++.||.-|||++..
T Consensus 22 ~c~~~~~l~~l~~~w~l~IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 22 QCPSREVLKHVTSRWGVLILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp TCTHHHHHHHHHSHHHHHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 4555666777775542 22221125789999999999 799999999999999999999874
No 109
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=74.35 E-value=12 Score=33.00 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=39.8
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEEecCC
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~ 195 (295)
++.+.+.++|+.+|+.|=-+|-+++.|+..|+|++.....-...|..
T Consensus 19 ~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~ 65 (260)
T 3r4k_A 19 RLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRLGPQ 65 (260)
T ss_dssp BSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEEECTT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHH
Confidence 47899999999999999999999999999999999865333345643
No 110
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=74.15 E-value=3.3 Score=33.11 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
|..+-++.+.+++. ++.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 7 ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 7 LDRVDMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34455678888875 467999999999999999999999999999999864
No 111
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=73.71 E-value=2.3 Score=33.16 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.+.++.. +.+.+.++|+.|++.+--++-.++.|+..|||++..
T Consensus 25 ~IL~~L~~---~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 25 RILVALLD---GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHHHHT---TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 35555552 447788999999999999999999999999998753
No 112
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=73.54 E-value=5 Score=32.67 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
-+.+-++...+++.+.+.++|+.++|..+-+..|+..|...|||+..
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEc
Confidence 33444444456678999999999999999999999999999999865
No 113
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=73.48 E-value=4.2 Score=30.98 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhh
Q 022537 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLE 176 (295)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLE 176 (295)
.+..++++++.+.....++|.++|+.+++.+|.|+-+..-.-
T Consensus 7 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 48 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYL 48 (113)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 356788999998888889999999999999999998876443
No 114
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=73.25 E-value=4.2 Score=32.52 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
..-.+.+.+++. ++.+...++|+.||+.+.-++..++-||.-|+|.+.
T Consensus 7 ~~~~~iL~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 7 DIDRILVRELAA--DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 344567788864 467999999999999999999999999999999754
No 115
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=73.03 E-value=4.8 Score=31.51 Aligned_cols=38 Identities=16% Similarity=0.402 Sum_probs=34.7
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
..+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 54 ~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp SCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 34578999999999999999999999999999999873
No 116
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=72.20 E-value=4.3 Score=32.97 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
|...-.+.+.+++.. +.+...++|+.||+++..++..++-||.-|+|.+.
T Consensus 8 ld~~~~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 8 LDKTDIKILQVLQEN--GRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 444556788888753 56899999999999999999999999999999964
No 117
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=72.06 E-value=3.8 Score=30.85 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.++++++ .+.+.+.++|+.|+|+.=-|--.++.||.-|+|.|.
T Consensus 5 ~~Il~~L~~--~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLAL--RGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHH--SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 456667764 578999999999999888888889999999999998
No 118
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=71.53 E-value=9.6 Score=32.22 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=41.3
Q ss_pred HHHHHHHHHh---CCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 137 TRKFINLIQE---AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 137 TkkFI~ll~~---a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
.....+.+.. .|+..+.-.++|+.|||+|--+=+.+..|+.-|||+.....
T Consensus 18 ~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 71 (218)
T 3sxy_A 18 YNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRV 71 (218)
T ss_dssp HHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTT
T ss_pred HHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 3444444433 47888999999999999999999999999999999976443
No 119
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=71.17 E-value=4.3 Score=32.60 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
..+-.+.+.+++.. +.+...++|+.||+++.-+...++-|+.-|+|.+.
T Consensus 6 d~~~~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 6 DEIDKKIIKILQND--GKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CHHHHHHHHHHHHC--TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred CHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34445788888754 57999999999999999999999999999999873
No 120
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=71.10 E-value=4.3 Score=31.46 Aligned_cols=46 Identities=13% Similarity=0.277 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.++++++ .|.+.+.++|+.|+|+.=-|--.++.||.-|+|.|..
T Consensus 5 ~~Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 345667764 5799999999999998888888899999999999984
No 121
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=70.99 E-value=4.4 Score=30.51 Aligned_cols=41 Identities=10% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhh
Q 022537 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLE 176 (295)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLE 176 (295)
+..+.++++.......+++.++|+.+|+.+|.|+-+..-.-
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~ 43 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSR 43 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 45678889988888889999999999999999998876543
No 122
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=70.91 E-value=9.5 Score=29.58 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=42.2
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
+...+...+.. .++..+ ...++|+.|+|++--+...++.|+.-|+|+.....
T Consensus 14 i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~ 69 (113)
T 3tqn_A 14 LRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGL 69 (113)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 44555566653 366677 89999999999999999999999999999987443
No 123
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=70.89 E-value=3.3 Score=36.83 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=37.6
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
+.+.+.++|+++++..++++-++.+|.++|++++...+.|.-
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~ 81 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYAN 81 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEec
Confidence 679999999999999999999999999999999876665554
No 124
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=70.74 E-value=3.2 Score=37.08 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=41.9
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
..+.+. ++.+.+.++|+++++..|.++-+..+|.++|++++..++.|.-
T Consensus 30 lf~~l~---~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~ 78 (332)
T 3i53_A 30 VADHIA---AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGL 78 (332)
T ss_dssp HHHHHH---TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEE
T ss_pred hHHHHh---cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEc
Confidence 455554 3689999999999999999999999999999999987776655
No 125
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=70.61 E-value=7 Score=34.85 Aligned_cols=42 Identities=7% Similarity=0.142 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceec
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (295)
+.+.++.. +.+...++|+.|++.+--++-.+++|+..|||+.
T Consensus 16 ~IL~~L~~---g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLTC---MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHTT---TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35556642 5678889999999999999999999999999997
No 126
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=69.81 E-value=7 Score=31.27 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=29.3
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
++.+...++|+.+++.+=-+--+++-||.-|||++.
T Consensus 50 ~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 50 GIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ----CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 467899999999999999999999999999999654
No 127
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=69.41 E-value=18 Score=31.36 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=42.4
Q ss_pred HHHHHHHHHHh---CCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecccc
Q 022537 136 LTRKFINLIQE---AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 136 LTkkFI~ll~~---a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
+...+.+.+.. .|+..+...++|+.|||+|=-+-+.+..|+.-|||+....
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~ 84 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETH 84 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44555555543 4788899999999999999999999999999999998743
No 128
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=68.75 E-value=4.9 Score=31.98 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.+.+++ .++.+...++|+.||+.+--+...++.|+.-|+|.+.
T Consensus 6 ~~il~~L~--~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 6 LRILKILQ--YNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHT--TCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 45667775 3557999999999999999999999999999999973
No 129
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=68.45 E-value=9.1 Score=30.38 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=33.5
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceecccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
+.+...++|+.|+|.+=-+..+++.||.-|+|++...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 4578899999999999999999999999999998743
No 130
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=68.10 E-value=5.7 Score=29.60 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCC-ceeHHHHHHHhhhhhhhhhhhhhHhhh
Q 022537 136 LTRKFINLIQEAKDG-TLDLNRTAEVLEVQKRRIYDITNVLEG 177 (295)
Q Consensus 136 LTkkFI~ll~~a~~g-~ldLn~aA~~L~VqKRRIYDItNVLEg 177 (295)
+..++++++.+.... .+++.++|+.+++.+|.|+-+..-.-|
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g 45 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFG 45 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 456788888777655 899999999999999999887765443
No 131
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=67.95 E-value=3.7 Score=36.25 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=36.1
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceE
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (295)
++.+.+.++|+++++..|+++-++.+|.++|++++. .+.|.
T Consensus 37 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~-~~~y~ 77 (335)
T 2r3s_A 37 QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ-AEGYR 77 (335)
T ss_dssp TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec-CCEEe
Confidence 478999999999999999999999999999999874 44444
No 132
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=67.72 E-value=33 Score=26.32 Aligned_cols=75 Identities=9% Similarity=0.223 Sum_probs=37.5
Q ss_pred HHhhhhhhhhhhhhhHhhhccceeccccCceEEecCCCCCCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 159 EVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKL-------DDQVARLKAEIESLHAEECRIDDSIREKQ 231 (295)
Q Consensus 159 ~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~~s~~~~~-------~~~~~~Lk~El~~L~~~E~~LD~lI~~~~ 231 (295)
..|..+++.+-++..-|+.+ . .....|+-+|.-.. .... ...+..+..+++.|..+...+...+..++
T Consensus 30 ~~l~~~~~e~~~~~~eL~~l---~-~d~~vy~~iG~vfv-~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 30 QKVQLELTEAKKALDEIESL---P-DDAVVYKTVGTLIV-KTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTS---C-TTCCEEEEETTEEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC---C-CCcHhHHHhhHHHh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666655555554 3 23445666773211 1122 23334444555555555555555555555
Q ss_pred HHHHHHh
Q 022537 232 ELIRTLE 238 (295)
Q Consensus 232 ~~L~~Lt 238 (295)
..|+.+.
T Consensus 105 ~~l~~~~ 111 (117)
T 2zqm_A 105 AQIQSAL 111 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 133
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=67.71 E-value=6.4 Score=32.91 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 137 TRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 137 TkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.-+.+.++...+++.+...++|+.+++.+.-+.-|+..|..-|||+-.
T Consensus 14 Alr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 14 AVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 334555665566788999999999999999999999999999999755
No 134
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=67.59 E-value=44 Score=26.75 Aligned_cols=48 Identities=10% Similarity=0.195 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
..+-+.+-++...++ . .+.++|+.+++..+-+..|+.-|.--|||+-.
T Consensus 9 ~yAl~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~ 56 (145)
T 1xd7_A 9 AVAIHILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLKKADILTSR 56 (145)
T ss_dssp HHHHHHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEee
Confidence 334444555555555 3 99999999999999999999999999999855
No 135
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=67.25 E-value=5 Score=30.93 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=33.6
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.+...++|+.+++.+--++-+++-||.-|+|++..
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 478999999999999999999999999999999863
No 136
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=67.05 E-value=5 Score=32.03 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=33.4
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceecccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
.-+.+.++|+.+++..+-+..+++-||.-|+|++...
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 3379999999999999999999999999999999743
No 137
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=67.04 E-value=6.3 Score=32.83 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
|..+-++.+.+++.. +.+...++|+.||+++--+...++-||.-|+|.+.
T Consensus 15 ld~~d~~IL~~L~~~--~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 15 LDDLDRNILRLLKKD--ARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 344556788888754 57999999999999999999999999999999864
No 138
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=66.68 E-value=33 Score=26.94 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 135 LLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 135 lLTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
.+...+...+.. .|+..+ ...++|+.|+|.+--+-..+..|+.-|+|++....
T Consensus 17 ~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 73 (125)
T 3neu_A 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
T ss_dssp HHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCC
Confidence 355556666653 366677 59999999999999999999999999999987543
No 139
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=66.63 E-value=6.4 Score=32.12 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=44.9
Q ss_pred CCCCcCcHHHHHHH--HHHHHHhCCCCceeHHHHHHHh-hhhhhhhhhhhhHhhhccceeccc
Q 022537 126 GCRYDSSLGLLTRK--FINLIQEAKDGTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 126 ~~R~d~SLglLTkk--FI~ll~~a~~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.|-....|..|..+ ++-+..-. .|....+++++.| ++.++-+...+..||.-|||+|..
T Consensus 13 ~Cpi~~~l~~lg~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~ 74 (131)
T 4a5n_A 13 GSPVEFTLDVIGGKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREV 74 (131)
T ss_dssp CCHHHHHHHHHCSSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHHcCcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 34445556666544 22222223 6889999999999 999999999999999999999984
No 140
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=66.48 E-value=4.1 Score=37.29 Aligned_cols=43 Identities=12% Similarity=0.308 Sum_probs=38.4
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCc-eE
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH-IR 190 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~-i~ 190 (295)
+++.+.+.++|+++++..|.++-++.+|.++|++++...+. |.
T Consensus 68 ~~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~ 111 (369)
T 3gwz_A 68 QEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFA 111 (369)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEE
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEe
Confidence 46789999999999999999999999999999999976665 44
No 141
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=66.35 E-value=11 Score=28.28 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 133 LGLLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 133 LglLTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
...+...+...+.. .++..+ ...++|+.|+|++--+...++.|+.-|+|++....
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g~ 71 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAL 71 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTT
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 34455555555543 356667 99999999999999999999999999999987433
No 142
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=66.14 E-value=47 Score=28.26 Aligned_cols=44 Identities=25% Similarity=0.504 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.+.++. ++.+...++|+.+|+.+--++-.++.||.-|+|++.
T Consensus 23 ~~IL~~L~---~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45666665 367999999999999999999999999999999987
No 143
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=65.80 E-value=29 Score=28.44 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc--------------------cCceEEecCCCC
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS--------------------KNHIRWKGSDSL 197 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~--------------------KN~i~W~G~~~s 197 (295)
..|..++++-....-.|..--..|..-.-+|=|+..+++.|..+.+.+ .+-+.|+|.+..
T Consensus 12 ~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~ 91 (151)
T 2zdi_C 12 EKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYA 91 (151)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeE
Confidence 345555554444444444444455333555667777776666655211 234678886532
Q ss_pred CCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022537 198 GTSK-------LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (295)
Q Consensus 198 ~~~~-------~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lt 238 (295)
-.-. +..++..|+..++.|......+.+.|..+...|+++.
T Consensus 92 vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 92 VERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112 2333444555555555555555555555555555554
No 144
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=65.79 E-value=8.9 Score=33.66 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=34.6
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
++.+.+.++|+.+++.|=-+|-+++.|+..|+|++..
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~ 63 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSG 63 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC
Confidence 4678999999999999999999999999999999974
No 145
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=65.12 E-value=5.5 Score=31.17 Aligned_cols=42 Identities=12% Similarity=0.213 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhh
Q 022537 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLE 176 (295)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLE 176 (295)
.+..++++++.+.....+++.++|+.+++.+|.|+-+..-.-
T Consensus 11 ~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~ 52 (129)
T 1bl0_A 11 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKET 52 (129)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 466789999998888889999999999999999988876433
No 146
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=65.08 E-value=8.4 Score=28.93 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCC-CceeHHHHHHHhhhhhhhhhhhhhHh
Q 022537 136 LTRKFINLIQEAKD-GTLDLNRTAEVLEVQKRRIYDITNVL 175 (295)
Q Consensus 136 LTkkFI~ll~~a~~-g~ldLn~aA~~L~VqKRRIYDItNVL 175 (295)
...+.++++.+... ..+++.++|+.+|+++|.|.-+..-.
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34678889988887 89999999999999999998877643
No 147
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=65.07 E-value=4.2 Score=36.80 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=37.6
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
.++.+.+.++|+++++..|.++-++.+|.++|++++ ..+.|.=
T Consensus 52 ~~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~~~~y~~ 94 (348)
T 3lst_A 52 VDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-SDGRFAL 94 (348)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEE
T ss_pred hCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-cCCEEec
Confidence 457899999999999999999999999999999999 5555443
No 148
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=64.90 E-value=4.8 Score=36.24 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=39.4
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC--ceEE
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN--HIRW 191 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN--~i~W 191 (295)
.++.+. ++.+.+.++|+++++..+.++-++.+|..+|++++...+ .|.-
T Consensus 41 i~~~l~---~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~ 91 (374)
T 1qzz_A 41 LVDHLL---AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRP 91 (374)
T ss_dssp HHHHHH---TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEE
T ss_pred hHHHHh---CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEE
Confidence 445553 367999999999999999999999999999999986555 4443
No 149
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=64.84 E-value=13 Score=28.23 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhhhhhh-hhhhhhhHhhhccceeccccCceEEe
Q 022537 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKR-RIYDITNVLEGIGLIEKTSKNHIRWK 192 (295)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKR-RIYDItNVLEgIGLIeK~~KN~i~W~ 192 (295)
..-.+.+.+|... |.....++|+.|++.+= -+=-.+..||.=|+|++.+.+.-.|.
T Consensus 11 ~~~~~IL~~Lk~~--g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~ 67 (79)
T 1xmk_A 11 EIKEKICDYLFNV--SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWH 67 (79)
T ss_dssp HHHHHHHHHHHHT--CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEE
T ss_pred hHHHHHHHHHHHc--CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeE
Confidence 4557788888865 45789999999999774 77777888999999998877666884
No 150
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=64.69 E-value=24 Score=28.76 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=22.7
Q ss_pred eeHHHHHHHhhhhhh--hhhhhhhHhhhccceec--cccCceEE
Q 022537 152 LDLNRTAEVLEVQKR--RIYDITNVLEGIGLIEK--TSKNHIRW 191 (295)
Q Consensus 152 ldLn~aA~~L~VqKR--RIYDItNVLEgIGLIeK--~~KN~i~W 191 (295)
+.+.++|+.+||..+ |.| |..|||.- ...|.+++
T Consensus 3 ~~I~e~A~~~gvs~~tLR~Y------e~~GLl~p~~r~~~g~R~ 40 (142)
T 3gp4_A 3 LNIKEASEKSGVSADTIRYY------ERIGLIPPIHRNESGVRK 40 (142)
T ss_dssp BCHHHHHHHHTSCHHHHHHH------HHHTSSCCCCBCTTSCBC
T ss_pred CcHHHHHHHHCcCHHHHHHH------HHCCCCCCCcCCCCCCee
Confidence 568899999999877 445 56677753 33454444
No 151
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=64.60 E-value=7.2 Score=32.53 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
|..+-.+.+.+++.. +.+...++|+.||+...-+..-++-|+.-|+|.+.
T Consensus 25 ld~~d~~IL~~L~~~--~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 25 LDEIDKKIIKILQND--GKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 455667888888754 57999999999999999999999999999999874
No 152
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=64.34 E-value=4.1 Score=31.81 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=34.0
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.+...++|+.|++.+--+.-+++-||.-|+|++..
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 3568999999999999999999999999999999873
No 153
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=63.40 E-value=26 Score=26.97 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=41.2
Q ss_pred cCcHHHHHHH----HHHHHHhCCCCcee--HHHHHHHh-hhhhhhhhhhhhHhhhccceecccc
Q 022537 130 DSSLGLLTRK----FINLIQEAKDGTLD--LNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 130 d~SLglLTkk----FI~ll~~a~~g~ld--Ln~aA~~L-~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
...|..|..+ .+..+ . .|... ..++++.| ++.+.-+...+..||.-|||+|...
T Consensus 18 ~~~l~~l~~~wrl~IL~~L--~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 18 ESVLHLLGKKYTMLIISVL--G-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp SSTHHHHHSTTHHHHHHHH--T-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHcCccHHHHHHHH--h-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 4456666643 22223 2 45555 99999999 9999999999999999999999754
No 154
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=63.18 E-value=11 Score=28.64 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc--ccCceEEecC
Q 022537 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT--SKNHIRWKGS 194 (295)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~--~KN~i~W~G~ 194 (295)
+-..||++++.. .++.|.++|..+++..--.-|=++-||..|.|.=. ...+|.++..
T Consensus 8 ll~~Fi~yIk~~--Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 8 FLTEFINYIKKS--KVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HHHHHHHHHHHC--SEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HHHHHHHHHHHc--CeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 348899999965 58999999999999776666777888888776633 2344555543
No 155
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=62.39 E-value=5.4 Score=30.38 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=32.7
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
+.+...++|+.+++.+--++-+++-||.-|+|++.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 35789999999999999999999999999999986
No 156
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=62.38 E-value=8.8 Score=29.08 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhh----hhhhhhhhhhhHhhhccceeccc
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLE----VQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
..+.++.. .+.+...++|+.|+ +.+--+|-+++.||.-|+|++..
T Consensus 14 ~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 14 EVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 35555554 45699999999999 66999999999999999999874
No 157
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=62.01 E-value=27 Score=26.86 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=24.2
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhcccee--ccccCceEEe
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIE--KTSKNHIRWK 192 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~~KN~i~W~ 192 (295)
+.+.++|+.+||..+-|.=. |-.||+. +...|.+++-
T Consensus 2 ~~i~e~A~~~gvs~~tLR~y----e~~Gll~p~~r~~~g~R~Y 40 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHY----DDIGLLVPSERSHAGHRRY 40 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHH----HHHTSSCCSEECSSCCEEB
T ss_pred CCHHHHHHHHCcCHHHHHHH----HHCCCCCCCccCCCCCeec
Confidence 56889999999988765322 4567775 2245555554
No 158
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=61.58 E-value=30 Score=28.29 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHhhhhcCCCCCC--CeEEEEe--CCCCCeEEec
Q 022537 204 DQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQN--QTLIAIK--APQASYIEVP 279 (295)
Q Consensus 204 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted~~n~~~aYVT~eDI~~i~~f~~--qTviAIK--AP~gT~LEVP 279 (295)
.++++|++|+++++...++|-+.-..-.+..|+....----+.-+.+...++=...|.. +--|+.+ .+.|+.|+++
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~LlGykId~~~~~~~rl~S~Ya~~~~d~L~F~~~~~~g~~~~ll 83 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHPGDCLIFKATSPSGSKMQLL 83 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTTEEEEEETTCSSTTCCEEEEECC--CCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEEEccCCeEEEEEeecCCCCCeEEEEecCCCCceeeec
Confidence 46789999999999999999888887777777765432111222233333332234432 1233344 3457778886
Q ss_pred C
Q 022537 280 D 280 (295)
Q Consensus 280 d 280 (295)
+
T Consensus 84 ~ 84 (123)
T 4dzo_A 84 E 84 (123)
T ss_dssp C
T ss_pred C
Confidence 5
No 159
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=61.20 E-value=13 Score=32.77 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=38.0
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEEecCC
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~ 195 (295)
.+.+.+.++|+.+|+.|--+|-+++.|+..|+|++.+ ..|. .|..
T Consensus 34 ~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~-~~Y~-Lg~~ 78 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFLLTLVELGYVATDG-SAFW-LTPR 78 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESS-SEEE-ECGG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CEEE-EcHH
Confidence 4679999999999999999999999999999999974 4443 4543
No 160
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=61.06 E-value=5.1 Score=30.32 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=33.7
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
++..+...++|+.|||.+=-+...++.|+.-|+|++.
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3435899999999999999999999999999999876
No 161
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=60.55 E-value=50 Score=24.91 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=36.8
Q ss_pred HHhhhhhhhhhhhhhHhhhccceeccccCceEEecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022537 159 EVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (295)
Q Consensus 159 ~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~~s~~~~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lt 238 (295)
..|.-+++..-++..=|+.+ .- ....|+-+|.-.. ....+.-...|...++.+...-..|+..+..++..+.++.
T Consensus 25 ~~l~~~~~e~~~~~~EL~~l---~~-d~~vy~~iG~vfv-~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 25 QTVEMQINETQKALEELSRA---AD-DAEVYKSSGNILI-RVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHS---CT-TCCEEEEETTEEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC---CC-CchHHHHHhHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666555555 32 3345666774221 1123333444555555555555555555555555554443
No 162
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=60.18 E-value=6.3 Score=30.59 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=34.8
Q ss_pred CCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 148 KDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 148 ~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+++.+ ...++|+.|+|++=-+-..+..|+.-|+|++..
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 56666 999999999999999999999999999999875
No 163
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=60.15 E-value=16 Score=29.68 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCC-CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 137 TRKFINLIQEAK-DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 137 TkkFI~ll~~a~-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.-+.+.++...+ ++.+.+.++|+.+++.++-+..|+..|..-|||+-.
T Consensus 13 Al~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 13 GLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec
Confidence 334455555444 457999999999999999999999999999999843
No 164
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=59.57 E-value=7 Score=35.07 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=37.5
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
++.+.+.++|+++++..+.++-++.+|...|++++.....|.-
T Consensus 50 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~ 92 (360)
T 1tw3_A 50 AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVP 92 (360)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEe
Confidence 4678999999999999999999999999999999865555554
No 165
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=59.48 E-value=7.5 Score=32.72 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=34.3
Q ss_pred CCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 147 AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 147 a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
..+....+.++|+.|++.+--++..++.||.-|+|.+..
T Consensus 20 ~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred HhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 345578999999999998889999999999999999874
No 166
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=58.87 E-value=9.6 Score=28.21 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=32.4
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceec
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (295)
+++.+.+.++|+.|++.+=-++-+++.||.-|+|..
T Consensus 27 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~ 62 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVEC 62 (95)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccC
Confidence 344699999999999999999999999999999943
No 167
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=58.81 E-value=9 Score=30.38 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=35.1
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
.+..=..|...+++++.+.+-..+.+.++|+..||.|.-||
T Consensus 29 ~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 69 (218)
T 3dcf_A 29 GNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIY 69 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHH
Confidence 34445678888999999888788999999999999999999
No 168
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=58.58 E-value=7.9 Score=34.94 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=36.8
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
++.+.+.++|+++++..++++-++.+|.++|++++.. +.|.-
T Consensus 62 ~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~-~~y~~ 103 (359)
T 1x19_A 62 EGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED-GKWSL 103 (359)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC-CeEec
Confidence 4789999999999999999999999999999999874 34443
No 169
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=58.26 E-value=52 Score=28.68 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=56.2
Q ss_pred CcCcHHHHHHHHHHHHH-hCCCCc---------------eeHHHHHHHhhh-hhhhhhhhhhHhhhccceeccccCceEE
Q 022537 129 YDSSLGLLTRKFINLIQ-EAKDGT---------------LDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~-~a~~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
++.+...|-+.|..+.. -+||.. ..||+|=+.|.- .+|+.||. -|.|+.+-+..
T Consensus 55 ~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~--~l~G~~~~~e~------- 125 (207)
T 3bvo_A 55 FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL--KLHGIEIPERT------- 125 (207)
T ss_dssp SCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH--HHTTCCCCSSC-------
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HhcCCCccccc-------
Confidence 45678889999988875 345432 357777777775 78889997 45565554321
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhh
Q 022537 192 KGSDSLGTSKLDDQVARLKAEIES------LHAEECRIDDSIREKQELIRTLEE 239 (295)
Q Consensus 192 ~G~~~s~~~~~~~~~~~Lk~El~~------L~~~E~~LD~lI~~~~~~L~~Lte 239 (295)
.....+ ++-.++-++.++++. |..-+.++++.++.+.++|.+..+
T Consensus 126 --~~~~d~-~fLme~me~~E~le~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~ 176 (207)
T 3bvo_A 126 --DYEMDR-QFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFE 176 (207)
T ss_dssp --SSSSCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCCCH-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111 222223445555543 444455555666555555555553
No 170
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=57.86 E-value=7.5 Score=31.81 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=35.0
Q ss_pred HhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 145 QEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 145 ~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+....-.++.++|+++++..+-++.+++-|+.=|+|++.
T Consensus 45 ~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 45 LEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp HTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3334456799999999999999999999999999999985
No 171
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=55.88 E-value=8.7 Score=35.87 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=39.7
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
++.+|.+.+++.+.+.++|+.|++.+=.+==+++-||.-|||+|..
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~ 454 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKR 454 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEE
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 4445555556889999999999999999999999999999999973
No 172
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=55.86 E-value=40 Score=23.56 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022537 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (295)
Q Consensus 202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lte 239 (295)
+...+..|+.+--.|+..|+.|+..|..+...+-.|..
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 34567788888888999999999999999999887754
No 173
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=55.39 E-value=32 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022537 205 QVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (295)
Q Consensus 205 ~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lt 238 (295)
.+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888877776664
No 174
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=55.20 E-value=9.5 Score=30.27 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=41.2
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
+...+...+.. .|+..+ ...++|+.|+|+|--+-..+..|+.-|+|+.....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~ 71 (126)
T 3ic7_A 16 IADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGI 71 (126)
T ss_dssp HHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCC
Confidence 44555555543 367777 89999999999999999999999999999987544
No 175
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=54.26 E-value=75 Score=26.72 Aligned_cols=97 Identities=21% Similarity=0.244 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHH-hCCCCc---------------eeHHHHHHHhhh-hhhhhhhhhhHhhhccceeccccCceEEecCC
Q 022537 133 LGLLTRKFINLIQ-EAKDGT---------------LDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (295)
Q Consensus 133 LglLTkkFI~ll~-~a~~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~ 195 (295)
...|-+.|..+.. -+||.. .-|++|=+.|.= .+|+.||.. |.|+.+-.-. .
T Consensus 20 ~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~--l~g~~~~~e~----------~ 87 (174)
T 3hho_A 20 GSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS--LQGIEMNAEQ----------Q 87 (174)
T ss_dssp HHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH--HTTCCCC--------------
T ss_pred HHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH--ccCCCccccc----------C
Confidence 6778888888875 345431 236777777765 899999974 4566554322 0
Q ss_pred CCCCchhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022537 196 SLGTSKLDDQVARLKAEIES----------LHAEECRIDDSIREKQELIRTLEENE 241 (295)
Q Consensus 196 ~s~~~~~~~~~~~Lk~El~~----------L~~~E~~LD~lI~~~~~~L~~Lted~ 241 (295)
.....++-..+-++.++++. |..-..++++.|..|.++|....++.
T Consensus 88 ~~~d~~fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 143 (174)
T 3hho_A 88 TLQDPMFLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQS 143 (174)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11112232333445555543 55566677788888888888877653
No 176
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=54.11 E-value=8.3 Score=27.30 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.7
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhh
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITN 173 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItN 173 (295)
++..+.+.++|+.|||.|..||..++
T Consensus 7 ~~~~l~~~eva~~lgvsrstiy~~~~ 32 (66)
T 1z4h_A 7 PDSLVDLKFIMADTGFGKTFIYDRIK 32 (66)
T ss_dssp SSSEECHHHHHHHHSSCHHHHHHHHH
T ss_pred cccccCHHHHHHHHCcCHHHHHHHHH
Confidence 45689999999999999999999987
No 177
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=54.07 E-value=41 Score=23.76 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022537 203 DDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (295)
Q Consensus 203 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted 240 (295)
..++..|+.++..|..+-.+|-+.++...++|..|.+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999988764
No 178
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=54.06 E-value=12 Score=33.30 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=38.4
Q ss_pred HHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 141 INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 141 I~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+..+...+++.+...++|+.+++.+=.+--+++-||.-|+|+|..
T Consensus 164 L~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 164 LAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp HHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeC
Confidence 444444555579999999999999999999999999999999973
No 179
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=53.31 E-value=14 Score=29.48 Aligned_cols=52 Identities=12% Similarity=0.200 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHh--hhhhhhhhhhhhHhhhccceeccccC
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVL--EVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L--~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
...-++.+.+|+.. +.+...++|+.+ ++++-.+-.-+.+|+.-|||++....
T Consensus 12 d~~d~~IL~~L~~~--g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 12 TIWDDRILEIIHEE--GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CHHHHHHHHHHHHH--SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred CHHHHHHHHHHHHc--CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc
Confidence 33447788888643 579999999999 99999999999999999999987544
No 180
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=53.22 E-value=10 Score=34.57 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=33.9
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
++.+.+.++|+++++..|.++-++.+|.++|++++.
T Consensus 48 ~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~ 83 (363)
T 3dp7_A 48 REGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec
Confidence 478999999999999999999999999999999885
No 181
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=52.68 E-value=98 Score=26.64 Aligned_cols=40 Identities=10% Similarity=0.217 Sum_probs=27.4
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhcccee--cc-ccCceEEec
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIE--KT-SKNHIRWKG 193 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~-~KN~i~W~G 193 (295)
..+.+.++|+.+||..|-|- -.|.+||+. +. ..|.|+.-.
T Consensus 4 ~~~~i~e~a~~~gvs~~tlr----~y~~~gll~p~~~d~~~g~R~y~ 46 (278)
T 1r8e_A 4 SYYSIGEVSKLANVSIKALR----YYDKIDLFKPAYVDPDTSYRYYT 46 (278)
T ss_dssp CEEEHHHHHHHHTCCHHHHH----HHHHTTSSCCSEECTTTCCEEEE
T ss_pred CcEeHHHHHHHHCcCHHHHH----HHHHCCCCCCCccCCCCCccccC
Confidence 35789999999999888662 225668774 33 456676643
No 182
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=52.43 E-value=13 Score=30.40 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 137 TRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 137 TkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
-++.+.+++ .++.+...++|+.||++.--+..-++-|+.-|+|.+.
T Consensus 5 d~~il~~L~--~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 5 DRKILRILQ--EDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHT--TCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHH--HCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 356777776 4577899999999999999999999999999999964
No 183
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=52.21 E-value=52 Score=28.37 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=40.5
Q ss_pred HHHHHHHHh---CCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecccc
Q 022537 138 RKFINLIQE---AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 138 kkFI~ll~~---a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
..+.+.+.. .|+..+.-.++|+.|||+|--+=+.+..|+.-|||+....
T Consensus 35 ~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 35 GILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp HHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 444444433 4788899999999999999999999999999999997754
No 184
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=51.94 E-value=21 Score=28.20 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=39.7
Q ss_pred HHHHHHhCCCCceeHHHHHHHh-----hhhhhhhhhhhhHhhhccceecccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
.+++|.++ ++.+...++.+.| ++.+=-+|-.++.|+..|+|.|..-
T Consensus 16 Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 16 ISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 66677654 5689999999999 8899999999999999999998753
No 185
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=51.71 E-value=15 Score=33.62 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc-ccCceEEec
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT-SKNHIRWKG 193 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~-~KN~i~W~G 193 (295)
.+.+.+++ .++.+...++|+.|+|+++-||--++.|+..|++... ...-|+..+
T Consensus 8 ~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~g~GY~l~~ 62 (321)
T 1bia_A 8 LKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLPE 62 (321)
T ss_dssp HHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECSS
T ss_pred HHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecCCCcEEee
Confidence 44666674 5678999999999999999999999999999998532 222455543
No 186
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=51.32 E-value=13 Score=31.09 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=35.2
Q ss_pred CCCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 127 CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 127 ~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.|...+=..|..-.++++.+..-.-+.+.++|+++||.+.-||=
T Consensus 21 ~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 64 (211)
T 3fiw_A 21 GMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYW 64 (211)
T ss_dssp ---CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHT
T ss_pred cccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHH
Confidence 34445557788889999988777789999999999999999984
No 187
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=51.30 E-value=19 Score=28.36 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhh----hhhhhhhhhhhHhhhccceeccc
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLE----VQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.++.++... .+.+...++++.|+ +.+=-+|-+++-||.-|+|++..
T Consensus 13 ~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 13 AVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 456666543 35799999999998 78999999999999999999874
No 188
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=51.21 E-value=13 Score=33.55 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=38.8
Q ss_pred HHHHHhCCCCceeHHHHHHHhhh---hhhhhhhhhhHhhhccceecc--ccCceEE
Q 022537 141 INLIQEAKDGTLDLNRTAEVLEV---QKRRIYDITNVLEGIGLIEKT--SKNHIRW 191 (295)
Q Consensus 141 I~ll~~a~~g~ldLn~aA~~L~V---qKRRIYDItNVLEgIGLIeK~--~KN~i~W 191 (295)
.+.+... ++.+.+.++|+++++ ..++++-++.+|.++|++++. +.+.|.-
T Consensus 42 f~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~ 96 (352)
T 1fp2_A 42 PNIIQNH-GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYAL 96 (352)
T ss_dssp HHHHHHH-TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEE
T ss_pred hhhhhhc-CCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeC
Confidence 4444332 357999999999999 588999999999999999987 3344443
No 189
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=51.14 E-value=82 Score=24.24 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=29.4
Q ss_pred HHHHHhCCCCceeHHHHHHHhh--------hhh-hhhhhhhhHhhhccceecc
Q 022537 141 INLIQEAKDGTLDLNRTAEVLE--------VQK-RRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 141 I~ll~~a~~g~ldLn~aA~~L~--------VqK-RRIYDItNVLEgIGLIeK~ 184 (295)
+.++...| ..-.+++..|. +.. --||-+++-||.-|+|++.
T Consensus 19 L~~L~~~~---~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~ 68 (118)
T 2esh_A 19 LLLVAEKP---SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTE 68 (118)
T ss_dssp HHHHHHSC---BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCC---CCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEE
Confidence 44454444 44444455552 788 9999999999999999876
No 190
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=50.72 E-value=6.3 Score=29.28 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=25.4
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccc
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGL 180 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGL 180 (295)
-..+.++|..+||.+.-||-++.-...-|.
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 367999999999999999999988776544
No 191
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.59 E-value=34 Score=24.15 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 204 DQVARLKAEIESLHAEECRIDDSIREKQELIR 235 (295)
Q Consensus 204 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~ 235 (295)
..+..|+.|++.|..+-..|-+.+.++..+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999998888888888887764
No 192
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=50.04 E-value=13 Score=31.60 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=40.8
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.....+.+.. .|+..+ .-.++|++|||+|=-+-..+..|+.-|||+...
T Consensus 12 v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 12 AEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp HHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 33445555543 378888 799999999999999999999999999999764
No 193
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=49.47 E-value=19 Score=28.71 Aligned_cols=46 Identities=15% Similarity=0.394 Sum_probs=39.0
Q ss_pred HHHHHHhCCCCceeHHHHHHHh-----hhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+++|.+++++.+...++.+.| ++.+=-+|-.++.|+..|+|.+..
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 6677766554789999999999 788999999999999999999875
No 194
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=49.11 E-value=9.7 Score=31.38 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=35.9
Q ss_pred CCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 128 R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
|.+..-..|....++++.+.+-..+.+.++|++.||.|.-||-
T Consensus 40 r~~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~ 82 (229)
T 3bni_A 40 RSAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYR 82 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHH
Confidence 3344456788889999998888889999999999999999984
No 195
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=48.76 E-value=15 Score=28.40 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=36.3
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhh----hhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQ----KRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~Vq----KRRIYDItNVLEgIGLIeK~~ 185 (295)
++.++.. .+.+...++++.|+.. +=-+|-+++-||.-|+|+|..
T Consensus 40 VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 40 VMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 5566654 4468999999999864 568999999999999999874
No 196
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=48.41 E-value=14 Score=26.03 Aligned_cols=40 Identities=13% Similarity=0.294 Sum_probs=29.1
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceecccc--CceEEec
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK--NHIRWKG 193 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K--N~i~W~G 193 (295)
.++..++|+.|||+++-||..+.- |+ -+.+... .++.|.-
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~~~--G~-P~~~~~g~~~~~~y~~ 43 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQ--GM-PVLRGGGKGNEVLYDS 43 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTT--TC-CCSSCCCSSSCCEEEH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC--CC-CeEeeCCCcceEEECH
Confidence 478899999999999999999874 55 3333333 3666654
No 197
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=48.31 E-value=20 Score=30.01 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhC-CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 136 LTRKFINLIQEA-KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 136 LTkkFI~ll~~a-~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
..-+.+-++... +++.+.+.++|+.+++..+-+..|+..|..-|||+-.
T Consensus 28 yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 28 YGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 333444444433 4567999999999999999999999999999999854
No 198
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=48.00 E-value=9.5 Score=27.16 Aligned_cols=42 Identities=17% Similarity=0.421 Sum_probs=28.5
Q ss_pred EEecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 190 RWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELI 234 (295)
Q Consensus 190 ~W~G~~~s~~~~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L 234 (295)
.++|.+ ..+++.-+..+..+++.|..+-..|.+.+..++++|
T Consensus 16 ~~rGY~---~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 16 SFRGYD---EDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp ETTEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344655 457888888888888888888888888887776653
No 199
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=47.05 E-value=12 Score=31.92 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.3
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhh
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITN 173 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItN 173 (295)
.+..+.+.++|+.|+|.+.|+|+.+.
T Consensus 28 ~~~~LTv~EVAe~LgVs~srV~~LIr 53 (148)
T 2kfs_A 28 DEPTYDLPRVAELLGVPVSKVAQQLR 53 (148)
T ss_dssp TSCEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCceEcHHHHHHHhCCCHHHHHHHHH
Confidence 34789999999999999999999865
No 200
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=46.88 E-value=54 Score=23.12 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022537 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (295)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lt 238 (295)
+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788888888888888888877776664
No 201
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=46.30 E-value=16 Score=29.35 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=35.4
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.+..=..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 26 ~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~ 67 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred cHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHH
Confidence 344446788889999998888889999999999999999984
No 202
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=46.26 E-value=16 Score=32.91 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=36.5
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhh---hhhhhhhhhhHhhhccceecc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEV---QKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~V---qKRRIYDItNVLEgIGLIeK~ 184 (295)
..+.+... ++.+.+.++|+++++ ..++++-++.+|.++|++++.
T Consensus 35 if~~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 35 IADAIHNH-GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HHHHHHHH-TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred hHhHHhhc-CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 34445432 357999999999999 589999999999999999987
No 203
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=46.09 E-value=16 Score=32.49 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=35.2
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceE
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (295)
.+.+.++|+++++..|.++-++.+|.++|++++.. +.|.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~-~~y~ 94 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG-DAFR 94 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC-Ceee
Confidence 89999999999999999999999999999999875 4443
No 204
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=45.95 E-value=16 Score=31.25 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=37.9
Q ss_pred HHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceec
Q 022537 138 RKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (295)
Q Consensus 138 kkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (295)
....+.+.. .|+..+ .-.++|+.|||+|--+=+.+..|+.-|||+.
T Consensus 11 ~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 11 DWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp HHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 344444433 377788 5889999999999999999999999999998
No 205
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=45.92 E-value=21 Score=30.65 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhh
Q 022537 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITN 173 (295)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItN 173 (295)
+..+|++++.+.....+.|.++|+.+++++|.+..+.-
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56789999999988899999999999999999988763
No 206
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=45.05 E-value=34 Score=26.71 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCce
Q 022537 132 SLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHI 189 (295)
Q Consensus 132 SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i 189 (295)
.+..+...+.+++.. ++.+++.++-+.||++|+..-=|..-|..+|+..|.+-.++
T Consensus 63 ~~~~~~~~l~~~~~~--~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd~R~ 118 (121)
T 2pjp_A 63 RIVEFANMIRDLDQE--CGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHL 118 (121)
T ss_dssp HHHHHHHHHHHHHHH--HSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred HHHHHHHHHHHHHHH--CCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeCCEee
Confidence 344455556666654 37899999999999999999999999999999988754433
No 207
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=44.72 E-value=50 Score=24.87 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhh
Q 022537 131 SSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITN 173 (295)
Q Consensus 131 ~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItN 173 (295)
..+..+-+.+|...-..-++ ++.++|+.||+.|+-||.-+.
T Consensus 36 ~~l~~~Er~~I~~aL~~~~G--N~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 36 MSADRVRWEHIQRIYEMCDR--NVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp SCHHHHHHHHHHHHHHHTTS--CHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCC--CHHHHHHHhCCCHHHHHHHHH
Confidence 45677777766544333333 478999999999999997654
No 208
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=43.84 E-value=54 Score=25.05 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022537 208 RLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (295)
Q Consensus 208 ~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lte 239 (295)
.|...++.++..-..|+..+..++..+.++..
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666653
No 209
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=43.14 E-value=16 Score=33.17 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=32.0
Q ss_pred ceeHHHHHHHhhh------hhhhhhhhhhHhhhccceecc
Q 022537 151 TLDLNRTAEVLEV------QKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 151 ~ldLn~aA~~L~V------qKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.+.++|+++++ ..++++-++.+|.++|++++.
T Consensus 62 ~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 62 FMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp CBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 3999999999999 889999999999999999986
No 210
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=43.08 E-value=75 Score=24.24 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=24.7
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhccceec--cccCceEEe
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK--TSKNHIRWK 192 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK--~~KN~i~W~ 192 (295)
+.+.++|+.+||..+-|.-. |..|++.- ...|.+++-
T Consensus 3 ~~i~e~A~~~gvs~~tLR~y----e~~Gll~p~~~~~~g~R~Y 41 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHY----DNIELLNPSALTDAGYRLY 41 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHH----HHTTSSCCSEECTTCCEEB
T ss_pred ccHHHHHHHHCcCHHHHHHH----HHCCCCCCCeECCCCCeee
Confidence 57899999999988876432 45677753 234555553
No 211
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=43.02 E-value=24 Score=30.20 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=36.7
Q ss_pred CCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecccc
Q 022537 147 AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 147 a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
..++.+...++|+.|+|.+-.+-.+++-||.-|||++...
T Consensus 16 ~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 16 TRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp SSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred hcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 3577899999999999999999999999999999999853
No 212
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=42.96 E-value=44 Score=27.20 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022537 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (295)
Q Consensus 202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lt 238 (295)
+..++..|.++++.|....+.|+..|..+++.+....
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~ 122 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQ 122 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888888888877665544
No 213
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=42.45 E-value=1.3e+02 Score=24.00 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhcccee--ccccCceEEe-----------------cCCCCCCchhHHHHHH----
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIE--KTSKNHIRWK-----------------GSDSLGTSKLDDQVAR---- 208 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~~KN~i~W~-----------------G~~~s~~~~~~~~~~~---- 208 (295)
+.+.++|+.+||..+-|--. |..||+. +...|.+++- |+. -.++..-+..
T Consensus 1 ~~I~e~A~~~gvs~~tLR~y----e~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~s---l~eI~~~l~~~~~~ 73 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFY----EEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFN---LEESGELVNLFNDP 73 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHH----HHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHCcCHHHHHHH----HHCCCCCCCccCCCCCeeeCHHHHHHHHHHHHHHHCCCC---HHHHHHHHHhhhcC
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022537 209 ---LKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (295)
Q Consensus 209 ---Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lte 239 (295)
..+-.+-|..+...|++.|..+++.+..|..
T Consensus 74 ~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T 1q06_A 74 QRHSADVKRRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 214
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=42.32 E-value=28 Score=27.72 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=36.6
Q ss_pred CCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 128 R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
|.+..=..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 27 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~ 69 (222)
T 3bru_A 27 DASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYH 69 (222)
T ss_dssp CGGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhh
Confidence 3445556788889999998888899999999999999999983
No 215
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=41.81 E-value=16 Score=31.02 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=33.6
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+.+...++|+.|++.+--+.-+++.||.-|+|++..
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 458999999999999999999999999999999874
No 216
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=41.41 E-value=72 Score=22.88 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 206 VARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (295)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~L 237 (295)
...|..+++.|..+-..|...|..++..+..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665554444
No 217
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=41.29 E-value=23 Score=27.75 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=35.6
Q ss_pred CCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 147 AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 147 a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
++++.+.+.++|+.+++.+=++-=.+..||.-|||++.
T Consensus 32 ~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~ 69 (96)
T 2obp_A 32 NGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVS 69 (96)
T ss_dssp TTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEee
Confidence 37888999999999999999999999999999999975
No 218
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=41.25 E-value=29 Score=30.05 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=39.3
Q ss_pred HHHHHHHHHHH-HHhCCCCceeHHHHHHHhhhhhhhhhhhhhH-hhhccceecccc
Q 022537 133 LGLLTRKFINL-IQEAKDGTLDLNRTAEVLEVQKRRIYDITNV-LEGIGLIEKTSK 186 (295)
Q Consensus 133 LglLTkkFI~l-l~~a~~g~ldLn~aA~~L~VqKRRIYDItNV-LEgIGLIeK~~K 186 (295)
|...-+.++.. +....+..+.+..+|+.||+.+..+|..+.- |...|+|++...
T Consensus 245 l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~ 300 (324)
T 1hqc_A 245 LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPR 300 (324)
T ss_dssp CCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETT
T ss_pred CCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCc
Confidence 33444455544 4455666789999999999999999995554 777899987643
No 219
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=41.25 E-value=33 Score=28.97 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=40.5
Q ss_pred HHHHHHhCCCCceeHHHHHHHhh-hhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLE-VQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~-VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+.++...+.+...+.++++.++ +.+=-||--++.|+..|||++..
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~ 80 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIP 80 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEee
Confidence 45556677888899999999999 99999999999999999999774
No 220
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=41.19 E-value=35 Score=28.58 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhh--------------hhhhhhhhhhhHhhhccceeccc
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLE--------------VQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~--------------VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
..+.+.+...+.|. .++|+.+| |++=-+-.++..||..|||++..
T Consensus 57 ~~lr~~i~~g~~G~---~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~ 115 (150)
T 2v7f_A 57 SILRRVYLDGPVGI---ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP 115 (150)
T ss_dssp HHHHHHHHHCSBCH---HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHhCCCCH---HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeC
Confidence 34444454444454 99999999 88888999999999999999874
No 221
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=40.95 E-value=42 Score=29.23 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 135 LLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 135 lLTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+...+.+.+.. .++..+ ...++|+.++|+|--+-..++.|+.-|+|.+..
T Consensus 14 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 68 (243)
T 2wv0_A 14 QIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLK 68 (243)
T ss_dssp HHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 344555666654 366777 899999999999999999999999999999863
No 222
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.86 E-value=71 Score=24.47 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022537 203 DDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (295)
Q Consensus 203 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lt 238 (295)
-.++..|+.|+..|.-+-.++.-.|..+.++-+++-
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666665555555555555555555543
No 223
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.76 E-value=47 Score=25.07 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022537 201 KLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (295)
Q Consensus 201 ~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lt 238 (295)
.+...+..+..+++.|..+...+...+..++..|+.+.
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~ 106 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667788999999999999999999999999998763
No 224
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=40.41 E-value=38 Score=25.53 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhhh----hhhhhhhhhhHhhhccceeccc
Q 022537 139 KFINLIQEAKDGTLDLNRTAEVLEV----QKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~V----qKRRIYDItNVLEgIGLIeK~~ 185 (295)
.++.++... +.+...++|+.|++ .+--++-+++-||.-|+|++..
T Consensus 14 ~vL~~L~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 14 DVMNIIWDK--KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHS--SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhc--CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 456666653 46899999999985 7889999999999999999875
No 225
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=40.40 E-value=29 Score=30.82 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
++..+.....+.+...++|+.|++.+--+--+++-||.-|+|+|.
T Consensus 39 vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 39 LLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp HHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 444455554567999999999999999999999999999999987
No 226
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=40.12 E-value=29 Score=31.62 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=37.8
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
..+.|.+. .+.+++.++|.++++..+.++-+..+|.++|++++...
T Consensus 33 lfd~L~~~-~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~ 78 (353)
T 4a6d_A 33 VFDLLAEA-PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETR 78 (353)
T ss_dssp HHHHHHHS-SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHhcC-CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEecc
Confidence 34445443 46799999999999999999999999999999986543
No 227
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=40.00 E-value=37 Score=29.48 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 135 LLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 135 lLTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+...+.+.+.. .++..+ ...++|++++|+|=-+-..++.|+.-|+|++..
T Consensus 13 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 67 (236)
T 3edp_A 13 VIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKN 67 (236)
T ss_dssp HHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 355667777765 466777 899999999999999999999999999999864
No 228
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.89 E-value=58 Score=23.09 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022537 205 QVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (295)
Q Consensus 205 ~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lt 238 (295)
.+..|+.+++.|..+-..|...|..+.+++..|.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888888887777766653
No 229
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.69 E-value=67 Score=23.05 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIR 235 (295)
Q Consensus 202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~ 235 (295)
+...+..|+.+...|..+-..|...+.++.+-|.
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555554443
No 230
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=39.66 E-value=49 Score=24.50 Aligned_cols=34 Identities=6% Similarity=0.120 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 204 DQVARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (295)
Q Consensus 204 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~L 237 (295)
..+..|+.+++.|..+-..|.+.+..+.++|..|
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466778888888777777777777777777665
No 231
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=39.59 E-value=27 Score=32.66 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=33.0
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
..+.+..+++.++|+++-+.-.++-|+..|+|++.++.
T Consensus 310 p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~g 347 (373)
T 2qc0_A 310 PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSG 347 (373)
T ss_dssp SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--C
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecCC
Confidence 36789999999999999999999999999999987543
No 232
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=39.48 E-value=26 Score=28.47 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=34.9
Q ss_pred CCCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 127 CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 127 ~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.|.+..=..|..-.++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 31 ~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~ 74 (221)
T 3g7r_A 31 RTPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYR 74 (221)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHH
Confidence 34445556688888999988887889999999999999999984
No 233
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=39.36 E-value=69 Score=24.91 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022537 207 ARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (295)
Q Consensus 207 ~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted 240 (295)
..|..|+..|..++..||..|..++...+.|-..
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 3456678889999999999999999988888654
No 234
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=39.35 E-value=20 Score=28.00 Aligned_cols=30 Identities=10% Similarity=0.372 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 207 ARLKAEIESLHAEECRIDDSIREKQELIRT 236 (295)
Q Consensus 207 ~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~ 236 (295)
..|+++++.|+.+...|+..|..+..+|.+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467788888888888888888777665543
No 235
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=39.27 E-value=37 Score=28.36 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=34.6
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
.+...++|..||+.+..+.=+++-|+.-|+|++.. +.|.-
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~-~~i~i 216 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK-NKIIV 216 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS-SEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCC-CEEEE
Confidence 45789999999999999999999999999999874 44444
No 236
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=38.03 E-value=51 Score=29.99 Aligned_cols=42 Identities=14% Similarity=0.304 Sum_probs=37.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022537 199 TSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (295)
Q Consensus 199 ~~~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted 240 (295)
..++++++..|.+.++.+.+.|+.....|+...++|++|-+.
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777899999999999999999999999999999999764
No 237
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.98 E-value=42 Score=26.96 Aligned_cols=46 Identities=11% Similarity=0.241 Sum_probs=39.1
Q ss_pred HHHHHHhCCCCceeHHHHHHHh-----hhhhhhhhhhhhHhhhccceecccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
.+++|..+ ++.+...++.+.| ++.+=-+|-.++.|+..|||.+..-
T Consensus 27 Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 27 ILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEee
Confidence 56677654 5679999999999 7889999999999999999998753
No 238
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=37.91 E-value=29 Score=29.62 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=35.2
Q ss_pred CCCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 127 CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 127 ~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
.|...+-..|..--++++.+..-.-+.+.++|+++||.+--||
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY 67 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLY 67 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHH
Confidence 3445556788888999998777778999999999999999999
No 239
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=37.52 E-value=21 Score=30.79 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhh
Q 022537 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEG 177 (295)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEg 177 (295)
+..++++++.+..+..++|.++|+.+++++|.|.-+..-.-|
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~g 45 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTG 45 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 567889999988899999999999999999988877554433
No 240
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=37.47 E-value=9.3 Score=30.33 Aligned_cols=45 Identities=9% Similarity=0.004 Sum_probs=37.4
Q ss_pred CCCCCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 125 NGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 125 ~~~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
...|.+..-..|....++++.+..-.-+.+.++|++.||.|.-||
T Consensus 13 ~~~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY 57 (216)
T 3qqa_A 13 PSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIY 57 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSS
T ss_pred CCcccHHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHH
Confidence 344555666778888999999888888999999999999988887
No 241
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=37.41 E-value=39 Score=26.48 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
=..|..-.++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 9 r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 46 (195)
T 2dg7_A 9 EQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFR 46 (195)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHH
Confidence 35677888999988877889999999999999999984
No 242
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=37.17 E-value=12 Score=30.68 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=34.6
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 38 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 79 (225)
T 2id3_A 38 TARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYR 79 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 344445677788999988777789999999999999999984
No 243
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=36.99 E-value=19 Score=26.98 Aligned_cols=38 Identities=8% Similarity=0.286 Sum_probs=33.1
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH 188 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~ 188 (295)
+...+.++|+.||+.+=-++--+++|+.. +|.....+.
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~gr 77 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQGL 77 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEETT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeCc
Confidence 56899999999999999999999999999 998554333
No 244
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=36.75 E-value=78 Score=20.31 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 206 VARLKAEIESLHAEECRIDDSIREKQ 231 (295)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~ 231 (295)
+..|+.|+..|..+...|.--|..+.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655555443
No 245
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=36.70 E-value=19 Score=26.54 Aligned_cols=26 Identities=8% Similarity=0.296 Sum_probs=23.2
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhh
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITN 173 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItN 173 (295)
....+.+.+||+-||+.+..+|..++
T Consensus 13 ~K~~LTi~EaAeylgIg~~~l~~L~~ 38 (70)
T 1y6u_A 13 ERYTLTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp TSSEEEHHHHHHHTCSCHHHHHHHHH
T ss_pred ccceeCHHHHHHHHCcCHHHHHHHHH
Confidence 35678999999999999999999975
No 246
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.59 E-value=80 Score=23.90 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 022537 207 ARLKAEI 213 (295)
Q Consensus 207 ~~Lk~El 213 (295)
..||..+
T Consensus 22 ~eLq~~L 28 (72)
T 3nmd_A 22 RDLQYAL 28 (72)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344333
No 247
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=36.53 E-value=81 Score=24.55 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022537 212 EIESLHAEECRIDDSIREKQELIRTLEEN 240 (295)
Q Consensus 212 El~~L~~~E~~LD~lI~~~~~~L~~Lted 240 (295)
||+.-..+-..|.+.|...++.|++|..+
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44444455555666666667777777654
No 248
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=36.40 E-value=31 Score=31.54 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=38.4
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhh--hhh---hhhhhhhHhhhccceecc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEV--QKR---RIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~V--qKR---RIYDItNVLEgIGLIeK~ 184 (295)
..+.+..++++.+.+.++|+++++ ..| .++-|+.+|-++|+++..
T Consensus 45 ifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 45 LLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp HHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 556666655578999999999998 777 899999999999999986
No 249
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.96 E-value=32 Score=27.94 Aligned_cols=46 Identities=13% Similarity=0.365 Sum_probs=38.5
Q ss_pred HHHHHHhCCCCceeHHHHHHHh-----hhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+++|.+++++.+...++.+.| ++.+=-+|-.++.|+..|||.+..
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 5666665443689999999999 678889999999999999999874
No 250
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=35.55 E-value=43 Score=26.22 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=35.7
Q ss_pred CCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 128 R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
|.+..-..|....++++.+.+-.-+.+.++|+..||.|.-||
T Consensus 13 ~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y 54 (213)
T 2qtq_A 13 ETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVK 54 (213)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHh
Confidence 344455678889999998888788999999999999999988
No 251
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=35.24 E-value=24 Score=28.48 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=33.8
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceE
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (295)
.+...++|..||+.+..++=+.+-|+.-|+|+.. +++|.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 207 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKIT 207 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEE
Confidence 5678999999999999999999999999999876 44443
No 252
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=35.16 E-value=44 Score=25.63 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=34.6
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
+..-..|....++++.+.+-..+.+.++|++.||.|.-||
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 47 (195)
T 3ppb_A 8 RTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLF 47 (195)
T ss_dssp CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHH
Confidence 3344668888999999888788999999999999999999
No 253
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=35.13 E-value=80 Score=24.95 Aligned_cols=33 Identities=12% Similarity=0.327 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022537 207 ARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (295)
Q Consensus 207 ~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lte 239 (295)
.-|+..++.|...-+.|.+.+..+++++..+.+
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777777777766654
No 254
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=35.04 E-value=43 Score=26.35 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=36.7
Q ss_pred CCCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 127 CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 127 ~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.|....=..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 13 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (207)
T 2rae_A 13 RRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFR 56 (207)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHH
T ss_pred cchHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhh
Confidence 33455556788889999998887889999999999999999984
No 255
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=34.83 E-value=55 Score=28.32 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=40.8
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
+...+.+.+.. .++..+ ...++|+.++|+|=-+-..++.|+.-|+|.+..
T Consensus 10 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~ 63 (239)
T 3bwg_A 10 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVR 63 (239)
T ss_dssp HHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeC
Confidence 44455555543 366777 899999999999999999999999999999764
No 256
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=34.81 E-value=43 Score=27.09 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=33.2
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceE
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (295)
+...++|..||+.+..+.-+.+-|+.-|+|+.. ++.|.
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 216 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD-GREIS 216 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES-SSCEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEec-CCEEE
Confidence 467899999999999999999999999999986 44444
No 257
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.71 E-value=41 Score=32.14 Aligned_cols=51 Identities=18% Similarity=0.332 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccccccccccHhhhhc
Q 022537 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLEEN----ENHQKYMFLTEEDIAS 256 (295)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted----~~n~~~aYVT~eDI~~ 256 (295)
+..|+.|++.|+++-.+|++.|+.++..++++.+. +.-.+-+|=.-+|+++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44566666666666666666666666666555432 1223345555555543
No 258
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=34.11 E-value=21 Score=21.84 Aligned_cols=27 Identities=7% Similarity=0.004 Sum_probs=22.7
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhc
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGI 178 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgI 178 (295)
+...++|+.|+|.+.-||.++.-.+.-
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDPVSY 48 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCSTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhHHhc
Confidence 579999999999999999988765543
No 259
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=34.11 E-value=26 Score=21.87 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=20.0
Q ss_pred eeHHHHHHHhhhhhhhhhhhhh
Q 022537 152 LDLNRTAEVLEVQKRRIYDITN 173 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItN 173 (295)
+.+.++|+.|||.+.-||.+++
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999999999998765
No 260
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=34.00 E-value=55 Score=26.67 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=32.7
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
+...++|..||+.+..+.=+++-|+.-|+|+...+.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 678999999999999999999999999999987443
No 261
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=33.97 E-value=50 Score=28.26 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=31.7
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhccceecccc
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
....++|+.|++.+--+..+++-||.-|||++...
T Consensus 25 ~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 25 PLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 34599999999999999999999999999999853
No 262
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=33.90 E-value=62 Score=28.79 Aligned_cols=51 Identities=22% Similarity=0.224 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHh---CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 135 LLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 135 lLTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+...+.+.+.. .++..+ ...++|++++|+|--+-..++.|+.-|+|++..
T Consensus 33 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 87 (272)
T 3eet_A 33 RVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRS 87 (272)
T ss_dssp HHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 455666676654 356677 899999999999999999999999999998764
No 263
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=33.88 E-value=9.2 Score=31.16 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceec
Q 022537 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (295)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (295)
.+-.+.+..++ +++.+...++|+.|||++--+...+..|+.-|+|++
T Consensus 13 ~l~~~Il~~l~--~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 13 RIDRNILNELQ--KDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp SHHHHHHHHHH--HCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHHH--hCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 34455666554 566779999999999999999999999999999986
No 264
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=33.77 E-value=2.1e+02 Score=23.91 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHHHHHh-CCCCc---------------eeHHHHHHHhhh-hhhhhhhhhhHhhhccceeccccCceEEec
Q 022537 131 SSLGLLTRKFINLIQE-AKDGT---------------LDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 193 (295)
Q Consensus 131 ~SLglLTkkFI~ll~~-a~~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~~KN~i~W~G 193 (295)
-+...|-+.|..+... +||.. .-|++|=+.|.- .+|+.||.. |.|+.+-.-. +
T Consensus 15 i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~--l~g~~~~~e~--~------ 84 (171)
T 1fpo_A 15 LDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS--LHGFDLASEQ--H------ 84 (171)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH--TTTCCTTCSS--S------
T ss_pred CCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH--hcCCCccccc--c------
Confidence 3677888888888753 34421 246777777764 788899974 5565553211 0
Q ss_pred CCCCCCchhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 022537 194 SDSLGTSKLDDQVARLKAEIES---------LHAEECRIDDSIREKQELIRTLEEN 240 (295)
Q Consensus 194 ~~~s~~~~~~~~~~~Lk~El~~---------L~~~E~~LD~lI~~~~~~L~~Lted 240 (295)
....+ +.-..+-+++++|+. |..-..++++.|..|.++|....+.
T Consensus 85 -~~~d~-~fLme~me~rE~lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 138 (171)
T 1fpo_A 85 -TVRDT-AFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDN 138 (171)
T ss_dssp -CCSCH-HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -ccCCH-HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01111 222222334444443 4455566666666677666666643
No 265
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=33.68 E-value=37 Score=30.12 Aligned_cols=43 Identities=9% Similarity=0.234 Sum_probs=38.6
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
++..+..++|+.+++..+-+-..++-|...|+|++...+.|.-
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~~~~~~ 218 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVKIINDNTVVL 218 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETTTEEEE
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecCCeEEe
Confidence 5788999999999999999999999999999999886666653
No 266
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=33.67 E-value=1.3e+02 Score=28.34 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccHhhhhcCCCCCCCeEEEEeCCC-CCeEEec
Q 022537 203 DDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENH-QKYMFLTEEDIASLPCFQNQTLIAIKAPQ-ASYIEVP 279 (295)
Q Consensus 203 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted~~n-~~~aYVT~eDI~~i~~f~~qTviAIKAP~-gT~LEVP 279 (295)
..++..|+..++.|+.+-..|.++|..+...++....+... ..-.+-+..||... .....-|.-|+.+. ...++|-
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~~~~~~~~~~~~~~sC~~i~~~-g~~~SGvY~I~p~~~~~pf~Vy 94 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIANK-GAKQSGLYFIKPLKANQQFLVY 94 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCEESCCCCSCCBSSHHHHHTT-TCCCCEEEEECCTTCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCHHHHHhc-CCCCCeEEEEecCCCCCcEEEE
Confidence 45566666666666555555555554444333322111110 11245677777653 23455677787443 3456665
No 267
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=33.65 E-value=54 Score=26.28 Aligned_cols=38 Identities=8% Similarity=0.195 Sum_probs=33.2
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCce
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHI 189 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i 189 (295)
.+...++|..||+.+..+.-+.+-|+.-|+|+.. ++.|
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i 200 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLG-PGTV 200 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEE
Confidence 4578999999999999999999999999999875 4433
No 268
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=33.56 E-value=2.2e+02 Score=24.12 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=65.9
Q ss_pred CCCCcCcHHHHHHHHHHHHHh-CCCCc-------eeHHHHHHHhhh-hhhhhhhhhhHhhhccceeccccCceEEecCCC
Q 022537 126 GCRYDSSLGLLTRKFINLIQE-AKDGT-------LDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDS 196 (295)
Q Consensus 126 ~~R~d~SLglLTkkFI~ll~~-a~~g~-------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~~ 196 (295)
..+++.+...|.+.|..+... +||.. ..|++|=+.|.= .+|+.||..= +.|+.+-.-.... +...
T Consensus 25 ~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l-~~g~~~~~e~~~~-----~~~~ 98 (181)
T 3uo3_A 25 LPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL-LRNIDLTQEQTSN-----EVTT 98 (181)
T ss_dssp SCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH-HHCCCTTSHHHHH-----HHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH-HhCCCcccccccc-----cccc
Confidence 344788999999999999874 56542 468998888876 8999999731 1455443211000 0000
Q ss_pred CCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022537 197 LGTSKLDDQVARLKAEIE------SLHAEECRIDDSIREKQELIRTLEENE 241 (295)
Q Consensus 197 s~~~~~~~~~~~Lk~El~------~L~~~E~~LD~lI~~~~~~L~~Lted~ 241 (295)
. ..+.-.++-++.++++ +|..-..++++.|..|.++|.+..+..
T Consensus 99 ~-d~~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 148 (181)
T 3uo3_A 99 S-DPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDK 148 (181)
T ss_dssp T-CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C-CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 1122233344555554 355556677777888888888777643
No 269
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=33.34 E-value=2e+02 Score=23.53 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=26.3
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceec-cccCceEEec
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK-TSKNHIRWKG 193 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK-~~KN~i~W~G 193 (295)
..+.+.++|+.+||..+-|. -.|..|||.- ...|.|++-.
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR----~ye~~Gll~p~r~~~g~R~Y~ 50 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALH----FYESKGLITSIRNSGNQRRYK 50 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHH----HHHHTTSSCCEECTTSCEEBC
T ss_pred cCCCHHHHHHHHCcCHHHHH----HHHHcCCCCcccCCCCCEEeC
Confidence 45889999999999887653 2255666642 2345566544
No 270
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=33.23 E-value=24 Score=31.74 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccH
Q 022537 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLEENENH-QKYMFLTE 251 (295)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted~~n-~~~aYVT~ 251 (295)
.++|++|+..|+.+..+++++..+. ++|+.|.+-... ..|-|++-
T Consensus 28 N~~Lk~e~~~l~~~~~~~~~l~~En-~rLr~lL~~~~~~~~~~~i~A 73 (255)
T 2j5u_A 28 NQHLKERLEELAQLESEVADLKKEN-KDLKESLDITDSIRDYDPLNA 73 (255)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCCSCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCccccccCceEEE
Confidence 4568888888888888888877653 467777665443 34544433
No 271
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=32.66 E-value=32 Score=30.16 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=36.4
Q ss_pred CCCCce-eHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCc
Q 022537 147 AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH 188 (295)
Q Consensus 147 a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~ 188 (295)
.++..+ .-.++|+.++|+|=-+-..++.|+.-|+|.+.++..
T Consensus 31 ~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~g~Gt 73 (248)
T 3f8m_A 31 RIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVERRGRTT 73 (248)
T ss_dssp CTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEE
Confidence 456667 899999999999999999999999999999955543
No 272
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=32.51 E-value=24 Score=30.24 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=34.5
Q ss_pred CCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
..+.+.+.++|+.|++.+=-+--.+.-||..||++|..
T Consensus 24 ~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~ 61 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV 61 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34567899999999999999999999999999999973
No 273
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=32.23 E-value=46 Score=26.24 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
..|...+++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHH
Confidence 4577889999998888889999999999999999984
No 274
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=32.21 E-value=55 Score=21.85 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=29.2
Q ss_pred HHHHHhCCCCceeHHHHHHHh-----hhhhhhhhhhhhHhhhccceecc
Q 022537 141 INLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 141 I~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
+.++.. ++.+...++++.| +|..+-||-.++ .+|++ |.
T Consensus 11 ~~ll~~--~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~ 53 (64)
T 2p5k_A 11 REIITS--NEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KV 53 (64)
T ss_dssp HHHHHH--SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EE
T ss_pred HHHHHc--CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EE
Confidence 344443 4679999999999 999999997777 56777 54
No 275
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=32.18 E-value=46 Score=26.22 Aligned_cols=36 Identities=11% Similarity=0.395 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
..|...+++++.+.+-..+.+.++|++.||.|.-||
T Consensus 16 ~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 51 (195)
T 2iu5_A 16 KIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFY 51 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHH
Confidence 567788999998887778999999999999999998
No 276
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=32.06 E-value=38 Score=25.94 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
=..|....++++.+.+-.-+.+.++|++.||.|.-||
T Consensus 10 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 46 (188)
T 3qkx_A 10 AEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIY 46 (188)
T ss_dssp HHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHH
Confidence 3457778899999888888999999999999999999
No 277
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=31.99 E-value=10 Score=29.77 Aligned_cols=43 Identities=7% Similarity=0.102 Sum_probs=34.6
Q ss_pred CCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 128 R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
|.+..=..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 17 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 59 (203)
T 3mnl_A 17 AQRERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYR 59 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHH
Confidence 3344445677788899987766779999999999999999984
No 278
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.94 E-value=61 Score=26.25 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=38.2
Q ss_pred HHHHHHhCCCCceeHHHHHHHh-----hhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+++|.++ ++.+...++.+.| ++.+=-+|-.++.|+..|+|.+..
T Consensus 32 IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 32 VVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEE
Confidence 56666655 4579999999998 688999999999999999999875
No 279
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=31.94 E-value=56 Score=25.29 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 132 SLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 132 SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.=..|....++++.+.+-.-+.+.++|+..||.|.-||=
T Consensus 18 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 56 (206)
T 3kz9_A 18 RKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFN 56 (206)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHH
Confidence 335677888999988888889999999999999999983
No 280
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.87 E-value=51 Score=26.36 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=38.2
Q ss_pred HHHHHHhCCCCceeHHHHHHHh-----hhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+++|.+++ +.+...++.+.| .+.+=-+|-.++.|+..|+|.+..
T Consensus 19 Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 19 VSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 566776554 589999999998 578889999999999999999974
No 281
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=31.55 E-value=55 Score=25.07 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=34.4
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
+..=..|....++++.+.+-.-+.+.++|++.||.|.-||
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y 48 (191)
T 3on4_A 9 SNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIH 48 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhh
Confidence 4445678888999998877778999999999999999998
No 282
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=31.47 E-value=37 Score=26.08 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=33.9
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
.+..-..|....++++.+.+-..+.+.++|++.||.|.-||
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 48 (196)
T 3col_A 8 DMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVY 48 (196)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHH
Confidence 34445677888999998887778999999999999999998
No 283
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=31.29 E-value=44 Score=25.76 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=35.2
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
....=..|....++++.+.+-..+.+.++|++.||.|.-||-
T Consensus 6 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (183)
T 1zk8_A 6 IGLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHH
Confidence 344456788889999988877789999999999999999983
No 284
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=31.26 E-value=50 Score=25.49 Aligned_cols=41 Identities=20% Similarity=0.124 Sum_probs=34.5
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
.+..=..|....++++.+.+-.-+.+.++|+..||.|.-||
T Consensus 9 ~~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 49 (196)
T 3he0_A 9 AVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIY 49 (196)
T ss_dssp --CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHH
Confidence 34444678888999998887788999999999999999999
No 285
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=31.24 E-value=23 Score=28.35 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 131 SSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 131 ~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 23 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 62 (214)
T 2zb9_A 23 EVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYK 62 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 3345677788999988777789999999999999999984
No 286
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.12 E-value=91 Score=24.30 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 132 SLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 132 SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.|..-=...+.++.++.+.-++..+++.+++++.+-+-=|+-.||.-|||.+.
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEe
Confidence 34443445677778888888999999999999999999999999999999876
No 287
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=30.92 E-value=1.4e+02 Score=26.53 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc--cCceEEe-----------------------------cCCCC
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS--KNHIRWK-----------------------------GSDSL 197 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~--KN~i~W~-----------------------------G~~~s 197 (295)
...+.+.++|+.+||..|-|- ..|-+|||.-.. .|.++.- +.+..
T Consensus 1 s~~~tI~evA~~~gvs~~TLR----yYe~~GLL~p~~~~~~GyR~Y~~~dl~~L~~I~~lr~~G~sL~eIk~~l~~~~~~ 76 (249)
T 3qao_A 1 SNAMQIKELAELTGVSVRTLH----HYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFD 76 (249)
T ss_dssp CCCBCHHHHHHHHCCCHHHHH----HHHHTTSSCCEECTTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHCcCHHHHH----HHHHCCCCCCceECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHhccCchH
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 198 GTSKLDDQVARLKAEIESLHAEECRIDDSIREK 230 (295)
Q Consensus 198 ~~~~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~ 230 (295)
....+..++..|.++++.|......|++.|..+
T Consensus 77 ~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~ 109 (249)
T 3qao_A 77 KNVALDMQRHLLIEKKQRIETMLATLDLTIKNE 109 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 288
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=30.66 E-value=47 Score=26.98 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=34.5
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceecc-ccCceEE
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT-SKNHIRW 191 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~-~KN~i~W 191 (295)
.+...++|..||+.+..+.=+++-|+.-|+|++. .+ .|.-
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~-~i~i 207 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQR-TLLL 207 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSS-EEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCC-EEEE
Confidence 4578999999999999999999999999999986 44 4443
No 289
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=30.44 E-value=53 Score=26.03 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
..|...+++++.+.+-..+.+.++|++.||.|.-||
T Consensus 15 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 50 (189)
T 3vp5_A 15 NRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFY 50 (189)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHH
Confidence 567788999999888888999999999999999988
No 290
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=29.63 E-value=1e+02 Score=26.05 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=31.8
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+...++|..||+.+..+.=+++-|+.-|+|+...
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~ 251 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHG 251 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcC
Confidence 35679999999999999999999999999999864
No 291
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.58 E-value=73 Score=22.98 Aligned_cols=29 Identities=14% Similarity=0.456 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 206 VARLKAEIESLHAEECRIDDSIREKQELI 234 (295)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~~~L 234 (295)
+..|..+++.|..+-..|...|..+.+++
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777776666666666655544
No 292
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=29.38 E-value=36 Score=26.71 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=35.5
Q ss_pred CCCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 127 CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 127 ~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.|.+..-..|....++++.+.+-.-+.+.++|+..||.|.-||=
T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 53 (212)
T 3knw_A 10 KKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHH
Confidence 34445556788889999988887889999999999999999983
No 293
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=29.32 E-value=42 Score=27.40 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 34 ~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 69 (230)
T 2iai_A 34 TLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYH 69 (230)
T ss_dssp CHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHCCChhHHHH
Confidence 467778899988877889999999999999999883
No 294
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=29.28 E-value=22 Score=29.56 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=35.1
Q ss_pred CCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 128 R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
|....=..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 43 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~t~Y~ 85 (245)
T 3aqt_A 43 KREQTRARLITSARTLMAERGVDNVGIAEITEGANIGTGTFYN 85 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCChHHHHH
Confidence 3444455677889999988777789999999999999999983
No 295
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.13 E-value=1.1e+02 Score=23.27 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022537 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (295)
Q Consensus 202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lte 239 (295)
+...+..++.++..|......+...|..+...+..+..
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556777888888888888888888888888888754
No 296
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=28.90 E-value=22 Score=27.28 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 131 SSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 131 ~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
..-..|..-+++++.+.+-..+.+.++|++.||.|.-||
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 50 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFY 50 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHH
Confidence 344567777889998877779999999999999999998
No 297
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.81 E-value=1.2e+02 Score=22.83 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022537 214 ESLHAEECRIDDSIREKQELI 234 (295)
Q Consensus 214 ~~L~~~E~~LD~lI~~~~~~L 234 (295)
+.|+.+-.+.|..|+.++.+|
T Consensus 43 ~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 43 DELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 298
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=28.69 E-value=91 Score=26.67 Aligned_cols=38 Identities=26% Similarity=0.150 Sum_probs=33.1
Q ss_pred CCceeHHHHHHHhhhhhhhhhhhhhHhhhccceecccc
Q 022537 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (295)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (295)
+......++|+.|+|.+--+-.+++-||.-|||++...
T Consensus 22 ~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (226)
T 2qq9_A 22 GVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASD 59 (226)
T ss_dssp TCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 33446699999999999999999999999999999743
No 299
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.52 E-value=81 Score=23.45 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 206 VARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (295)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~L 237 (295)
+..|..++..|+..-..|..-...+.+++..|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333333344444433
No 300
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=28.18 E-value=67 Score=26.20 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=10.9
Q ss_pred CCCCcCcHHHHHHHHHHHHHhC
Q 022537 126 GCRYDSSLGLLTRKFINLIQEA 147 (295)
Q Consensus 126 ~~R~d~SLglLTkkFI~ll~~a 147 (295)
+-|+-.--.+..-+||..++..
T Consensus 39 g~R~Y~~~dl~~l~~I~~lr~~ 60 (146)
T 3hh0_A 39 GHRLYTKDDLYVLQQIQSFKHL 60 (146)
T ss_dssp SCEEBCHHHHHHHHHHHHHHHT
T ss_pred CCEeeCHHHHHHHHHHHHHHHc
Confidence 3443333344445667666543
No 301
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=28.11 E-value=1.9e+02 Score=21.75 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=31.5
Q ss_pred HHHHHHhCCCCceeH-HHHHHHhhhhhhhhhhhhhHhhhccceecc
Q 022537 140 FINLIQEAKDGTLDL-NRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 140 FI~ll~~a~~g~ldL-n~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
.+.++...|..-.+| ..+++.+++..--||-++.-||.-|+|++.
T Consensus 14 IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~ 59 (108)
T 3l7w_A 14 ILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTY 59 (108)
T ss_dssp HHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEE
Confidence 445555544333333 233444689999999999999999999986
No 302
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=28.02 E-value=1.1e+02 Score=24.37 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=33.2
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCce
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHI 189 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i 189 (295)
.+...++|..||+.+..+.=+++-|+.-|+|+... +.|
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~-~~i 204 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHG-KTI 204 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCC-CEE
Confidence 35689999999999999999999999999999764 444
No 303
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=27.88 E-value=58 Score=26.56 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=16.9
Q ss_pred CCCCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhh
Q 022537 126 GCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLE 162 (295)
Q Consensus 126 ~~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~ 162 (295)
+-|+-..-.+..-+||..++.. -+.|.++..-|.
T Consensus 51 g~R~Y~~~dl~~l~~I~~lr~~---G~sL~eIk~~l~ 84 (148)
T 3gpv_A 51 GDRIFNEEALKYLEMILCLKNT---GMPIQKIKQFID 84 (148)
T ss_dssp CCEEBCHHHHHHHHHHHHHHTT---TCCHHHHHHHHH
T ss_pred CCeecCHHHHHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 3444333344445677777543 245555544443
No 304
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=27.70 E-value=3e+02 Score=23.79 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceE
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (295)
++.++++. .|.+...++|..||++==..+=++=+||-=|+|.+.......
T Consensus 14 ~~ILE~Lk---~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~a 63 (165)
T 2vxz_A 14 RDILALLA---DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVA 63 (165)
T ss_dssp HHHHHHHT---TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEE
T ss_pred HHHHHHHH---hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEE
Confidence 55788887 899999999999999999999999999999999977655544
No 305
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=27.69 E-value=67 Score=30.03 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=34.9
Q ss_pred CcHHHHHH------HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceec
Q 022537 131 SSLGLLTR------KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (295)
Q Consensus 131 ~SLglLTk------kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (295)
+-||++.- ..++++....++.+.|+++++..++. .-||+..|+.+|++.-
T Consensus 188 SDLG~~sYrsYW~~~il~~L~~~~~~~isi~~is~~T~i~---~~DIi~tL~~l~~l~~ 243 (284)
T 2ozu_A 188 SDLGRLSYMAYWKSVILECLYHQNDKQISIKKLSKLTGIC---PQDITSTLHHLRMLDF 243 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHCBC---HHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHhCCC---HHHHHHHHHHCCCEEe
Confidence 45777763 35666666677889999999999985 5799999999999963
No 306
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=27.51 E-value=45 Score=27.20 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=33.3
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCce
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHI 189 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i 189 (295)
.+...++|..||+.+..+.=+++-|+.-|+|+.. ++.|
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i 212 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVS-PRSV 212 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-SSCE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEec-CCEE
Confidence 3578999999999999999999999999999986 3444
No 307
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=27.41 E-value=2.7e+02 Score=24.16 Aligned_cols=96 Identities=10% Similarity=0.094 Sum_probs=54.5
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhh-hccceeccccCceEEecCCCCCCchhHHHHH
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLE-GIGLIEKTSKNHIRWKGSDSLGTSKLDDQVA 207 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLE-gIGLIeK~~KN~i~W~G~~~s~~~~~~~~~~ 207 (295)
++.||-.+-.+...++. .| +.-.++|+.|||+|-.+--.+..-. -.|+|+=- +.. .+.....+.
T Consensus 6 ke~sl~eiG~ria~~y~---~g-~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lf--------p~~---~~ls~p~~~ 70 (192)
T 1zx4_A 6 LQHSIREIGLRLMRMKN---DG-MSQKDIAAKEGLSQAKVTRALQAASAPEELVALF--------PVQ---SELTFSDYK 70 (192)
T ss_dssp CSSCHHHHHHHHHHHHH---TT-CCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTC--------SCG---GGCCHHHHH
T ss_pred ccccHHHHHHHHHHHHH---cC-CCHHHHHHHhCcCHHHHHHHHHHhccchhhHHHc--------CCc---ccCccchHH
Confidence 36788999999888853 22 8899999999998877665433211 11111100 100 111122344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022537 208 RLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (295)
Q Consensus 208 ~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lte 239 (295)
.|..=-+.|..+...+|++|..+.+++..+.+
T Consensus 71 ~L~k~~~~l~~~~~~l~eLi~~~~~~i~~~~~ 102 (192)
T 1zx4_A 71 TLCAVGDEMGNKNLEFDQLIQNISPEINDILS 102 (192)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhh
Confidence 44433344444455677777777777777643
No 308
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.18 E-value=1.4e+02 Score=22.70 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=38.1
Q ss_pred hhhhhhhhhhhHhhhccceeccccCceEEecCCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022537 163 VQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGT---SKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (295)
Q Consensus 163 VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~~s~~---~~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lt 238 (295)
+.|||--+|=+-++.+.-+--...+ +...+.. ...-+-+..|+.+...|..+...|.+....+..+|..|.
T Consensus 13 ~ER~RR~~ln~~f~~Lr~~vP~~~~-----~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 13 LERQRRNELKRSFFALRDQIPELEN-----NEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGTT-----CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777766665432211110 0011100 012233566777777777666677777777777776663
No 309
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=26.92 E-value=54 Score=25.13 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
=..|....++++.+.+-..+.+.++|++.||.|.-||-
T Consensus 8 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 45 (191)
T 1sgm_A 8 REKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYH 45 (191)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHH
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHH
Confidence 35677888999988888889999999999999988883
No 310
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=26.87 E-value=52 Score=25.83 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 132 SLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 132 SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
.=..|...+++++.+.+-.-+.+.++|++.||.|.-||
T Consensus 10 ~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 47 (193)
T 2dg8_A 10 RRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMT 47 (193)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhh
Confidence 33568888999999888788999999999999999999
No 311
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.73 E-value=52 Score=26.23 Aligned_cols=40 Identities=8% Similarity=0.037 Sum_probs=33.6
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
.+..=..|....++++.+.. .-+.+.++|+..||.|.-||
T Consensus 18 ~~~~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY 57 (215)
T 2hku_A 18 GRQTRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVT 57 (215)
T ss_dssp --CHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHH
Confidence 34444667888999998888 99999999999999999999
No 312
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=26.60 E-value=44 Score=26.62 Aligned_cols=38 Identities=11% Similarity=0.225 Sum_probs=33.3
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceE
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (295)
+...++|..||+.+..+.=+.+-|+.-|+|++. ++.|.
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 202 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK-GKTMV 202 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEEE
Confidence 577899999999999999999999999999876 34443
No 313
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=26.49 E-value=37 Score=26.51 Aligned_cols=50 Identities=12% Similarity=0.033 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCce
Q 022537 137 TRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHI 189 (295)
Q Consensus 137 TkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i 189 (295)
-.+.+..+.. ...++.++|..+++.+..+-++...|...|.|.+...+.|
T Consensus 9 ~~~i~~~~~~---~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~ 58 (121)
T 2pjp_A 9 WQKAEPLFGD---EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRY 58 (121)
T ss_dssp HHHHGGGCSS---SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred HHHHHHHHHh---CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCce
Confidence 3444444432 4579999999999999999999999999999999976643
No 314
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=26.45 E-value=54 Score=25.29 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.|....++++.+.+-..+.+.++|++.||.|.-||-
T Consensus 6 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 41 (194)
T 3bqz_B 6 KILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYY 41 (194)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHH
Confidence 466778888888777889999999999999999984
No 315
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=26.42 E-value=39 Score=28.06 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=31.8
Q ss_pred ceeHHHHHHHhhhhhh-hhhhhhhHhhhccceeccc
Q 022537 151 TLDLNRTAEVLEVQKR-RIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKR-RIYDItNVLEgIGLIeK~~ 185 (295)
.+...++|..||+.+| .+.=+++-|+.-|+|++..
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~ 204 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKN 204 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecC
Confidence 3567899999999998 9999999999999999874
No 316
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.17 E-value=86 Score=30.15 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccccccccccHhhhh
Q 022537 208 RLKAEIESLHAEECRIDDSIREKQELIRTLEEN----ENHQKYMFLTEEDIA 255 (295)
Q Consensus 208 ~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted----~~n~~~aYVT~eDI~ 255 (295)
.|.+|+..|.++..+|++.|++++..+..+.+. +.-.+-+|=+-+|++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455566666666566666655555555544432 122234544555554
No 317
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=26.15 E-value=61 Score=26.68 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=32.2
Q ss_pred HHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhcccee
Q 022537 141 INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIE 182 (295)
Q Consensus 141 I~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 182 (295)
+.++-.+ +.-++..+.+.-|..||-+.|.+..|..+|+.-
T Consensus 25 la~lId~--~~~nvp~L~~~TGmPRRTiQd~I~aL~elgI~~ 64 (117)
T 3ke2_A 25 LAHLMDD--ARHNLLSLGKLTGMPRRTLQDAIASFADIGIEV 64 (117)
T ss_dssp HHHHHHH--SCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEE
T ss_pred HHHHHhc--CCCCHHHHHHHHCCCHhHHHHHHHHhhhCCeEE
Confidence 3344344 444999999999999999999999999999853
No 318
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=25.98 E-value=1.3e+02 Score=20.71 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=26.6
Q ss_pred HHHHHHHHHHH-HHhCCCCceeHHHHHHHhhhhhhhhhhhhh
Q 022537 133 LGLLTRKFINL-IQEAKDGTLDLNRTAEVLEVQKRRIYDITN 173 (295)
Q Consensus 133 LglLTkkFI~l-l~~a~~g~ldLn~aA~~L~VqKRRIYDItN 173 (295)
+..+-+.+|.. +... | +...+|+.||+.|+-||.-+.
T Consensus 18 l~~~Er~~I~~aL~~~--g--n~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEY--P--STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp CSHHHHHHHHHHHHHS--C--SHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--C--CHHHHHHHhCCCHHHHHHHHH
Confidence 44555666544 3444 3 678999999999999997654
No 319
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.94 E-value=1.2e+02 Score=22.76 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 206 VARLKAEIESLHAEECRIDDSIREKQELIR 235 (295)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~ 235 (295)
+..|+.+...|..+-..|-..+..++++|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555544454444444444444444443
No 320
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=25.92 E-value=33 Score=33.79 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=34.1
Q ss_pred CCCCceeHHHHHHHhhhhhhhhhhhhhHhhhcccee
Q 022537 147 AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIE 182 (295)
Q Consensus 147 a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 182 (295)
-.||..+|-++|+++++.=++++|+.+.|..-|||+
T Consensus 398 ~~dG~~slldia~~~~~~~~~~~~~~~~l~~~~l~~ 433 (435)
T 3k9t_A 398 MSDGKNSLLDIAYKSGMEFRRIKYAADALYRVELLK 433 (435)
T ss_dssp HCEEEEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEE
T ss_pred hccCCccHHHHHHHhCcCHHHHHHHHHHHHHccCcc
Confidence 368999999999999999999999999999999987
No 321
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=25.91 E-value=95 Score=27.33 Aligned_cols=62 Identities=8% Similarity=0.143 Sum_probs=50.6
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceE
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (295)
....-..+..+....+..++-..-++.++++.|++....+-+++..|...|.|.|...+.|.
T Consensus 135 ~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~ 196 (258)
T 1lva_A 135 FSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYW 196 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEE
Confidence 34445567788888887666556689999999999999999999999999999999777543
No 322
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=25.85 E-value=53 Score=25.07 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.|....++++.+.+-.-+.+.++|++.||.|.-||-
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (170)
T 3egq_A 8 RIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFY 43 (170)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHH
Confidence 466778888887776789999999999999999994
No 323
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=25.85 E-value=47 Score=27.57 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 132 SLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 132 SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.-..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 24 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~ 62 (231)
T 2zcx_A 24 REEAILDAARELGTERGIREITLTDIAATVGMHKSALLR 62 (231)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHH
Confidence 335677778889988777789999999999999999984
No 324
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=25.72 E-value=1e+02 Score=28.62 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=40.1
Q ss_pred CcHHHHHH------HHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccC
Q 022537 131 SSLGLLTR------KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (295)
Q Consensus 131 ~SLglLTk------kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (295)
+-||++.- ..++++.+. +..+.|++++...++. .-||+..|+.+|++......
T Consensus 183 SdLG~~sY~~YW~~~i~~~L~~~-~~~isi~~is~~Tgi~---~~Dii~tL~~l~~l~~~kg~ 241 (276)
T 3to7_A 183 SDLGLLSYRAYWSDTLITLLVEH-QKEITIDEISSMTSMT---TTDILHTAKTLNILRYYKGQ 241 (276)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-CSEEEHHHHHHHHCBC---HHHHHHHHHHTTCEEEETTE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc-CCceeHHHHHHHhCCC---HHHHHHHHHHCCCEEEeCCc
Confidence 45777663 255666554 5689999999999995 48999999999999765333
No 325
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=25.58 E-value=92 Score=24.58 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
..|....++++.+..- .+.+.++|+..||.|.-||
T Consensus 16 ~~Il~aA~~lf~~~G~-~~t~~~IA~~agvs~~tlY 50 (196)
T 2qwt_A 16 ARVLEVAYDTFAAEGL-GVPMDEIARRAGVGAGTVY 50 (196)
T ss_dssp HHHHHHHHHHHHHTCT-TSCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHhCCCHHHHH
Confidence 3566778888887776 6999999999999999998
No 326
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.52 E-value=1e+02 Score=28.98 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 022537 221 CRIDDSIREKQELIRTLE 238 (295)
Q Consensus 221 ~~LD~lI~~~~~~L~~Lt 238 (295)
.++|..|.++.+.+++++
T Consensus 459 ~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 459 GEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhcccHHHHHH
Confidence 333333333334444333
No 327
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=25.37 E-value=65 Score=27.42 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=35.8
Q ss_pred CCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 128 R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
|...+-..|....++++.+..-.-+.+..+|+++||.+.-||=
T Consensus 3 r~~~tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~ 45 (234)
T 2opt_A 3 MAPLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYA 45 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHH
Confidence 3344556788889999988777789999999999999999994
No 328
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.33 E-value=1.4e+02 Score=22.67 Aligned_cols=33 Identities=9% Similarity=0.260 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022537 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (295)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lt 238 (295)
+...+.++..|..+-..|...|..+...+..|.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555554444
No 329
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=25.32 E-value=91 Score=26.28 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=35.6
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
...+-..|....++++.+..-.-+.+..+|+++||.+--||-
T Consensus 14 ~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 55 (237)
T 2hxo_A 14 EPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYW 55 (237)
T ss_dssp --CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGG
T ss_pred CccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHH
Confidence 344557788999999998888899999999999999999994
No 330
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=25.26 E-value=30 Score=26.91 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=34.0
Q ss_pred CCCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 127 CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 127 ~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.|.+..=..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 10 ~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 53 (191)
T 4aci_A 10 DKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFH 53 (191)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHH
Confidence 34445556788888999987766789999999999999999984
No 331
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=25.25 E-value=65 Score=24.75 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 208 RLKAEIESLHAEECRIDDSIREKQELI 234 (295)
Q Consensus 208 ~Lk~El~~L~~~E~~LD~lI~~~~~~L 234 (295)
.|+.|+..+.+.-.++.+.|+++.+.|
T Consensus 48 ~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 48 VLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 332
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=25.22 E-value=48 Score=26.60 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=33.5
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
+...++|..||+.+..+.-+++-|+.-|+|+.. ++.|.-
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~i 185 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRSG-YGKIQL 185 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEEE
Confidence 567899999999999999999999999999975 444443
No 333
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=25.20 E-value=47 Score=26.06 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=35.8
Q ss_pred CCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 128 R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
|.+..=..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 23 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 65 (217)
T 3mvp_A 23 RSIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYA 65 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHH
Confidence 3444556788889999988777789999999999999999994
No 334
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.10 E-value=1.2e+02 Score=29.12 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022537 212 EIESLHAEECRIDDSIREKQELIRTLEEN 240 (295)
Q Consensus 212 El~~L~~~E~~LD~lI~~~~~~L~~Lted 240 (295)
+.+.|+++-.++++.++.++++++++.++
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 33444455556667777777777777665
No 335
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=25.06 E-value=81 Score=21.77 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhH
Q 022537 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNV 174 (295)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNV 174 (295)
+..+-+.+|...-...+| +...+|+.|||.++-+|--+.-
T Consensus 16 l~~~E~~~i~~aL~~~~g--n~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 16 KKEFEKIFIEEKLREYDY--DLKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC--CHHHHHHHHCcCHHHHHHHHHH
Confidence 334445555444333333 4779999999999999987653
No 336
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=24.95 E-value=46 Score=30.98 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=33.2
Q ss_pred CcHHHHHHH------HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceec
Q 022537 131 SSLGLLTRK------FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (295)
Q Consensus 131 ~SLglLTkk------FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (295)
+-||++.-+ .++++.. ..+.+.|+++++..++ +.-||+..|+.+|++..
T Consensus 183 SdLG~~sYr~YW~~~il~~L~~-~~~~isi~~is~~T~i---~~~Dii~tL~~l~~l~~ 237 (278)
T 2pq8_A 183 SDLGKLSYRSYWSWVLLENLRD-FRGTLSIKDLSQMTSI---TQNDIISTLQSLNMVKY 237 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC--------CHHHHHHHCB---CHHHHHHHHHHTTCEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-cCCCccHHHHHHHhCC---CHHHHHHHHHHCCCEEE
Confidence 457777632 4555544 3468999999999999 47899999999999964
No 337
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=24.95 E-value=50 Score=27.01 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=34.9
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.+..-..|....++++.+..-.-+.+.++|++.||.+.-||-
T Consensus 42 ~~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~ 83 (236)
T 3q0w_A 42 GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYF 83 (236)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHH
Confidence 334445678889999988877789999999999999999984
No 338
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=24.91 E-value=2.6e+02 Score=22.17 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=27.1
Q ss_pred HHHHHHhCCCCceeHHHHHHHhh-----hhhhhhhhhhhHhhhc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLE-----VQKRRIYDITNVLEGI 178 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~-----VqKRRIYDItNVLEgI 178 (295)
.+..|++.....=-+..+|.+|+ =.+.||||.+..++..
T Consensus 44 IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 44 ILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp HHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 45555554333344667999995 3789999999988754
No 339
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=24.83 E-value=51 Score=25.23 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
..|....++++.+.+-..+.+.++|+..||.|.-||-
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 11 DDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHH
Confidence 4567778899988777789999999999999999983
No 340
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.82 E-value=45 Score=20.75 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022537 216 LHAEECRIDDSIREKQELIRTL 237 (295)
Q Consensus 216 L~~~E~~LD~lI~~~~~~L~~L 237 (295)
|+-+.+.|++.|..+.|.+-.|
T Consensus 5 lefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHh
Confidence 4444455555555555554443
No 341
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=24.63 E-value=1.2e+02 Score=26.77 Aligned_cols=35 Identities=26% Similarity=0.192 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022537 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (295)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted 240 (295)
++.|+.|+..|..+-+..++-|+.++++|..+.++
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56667776666666666666666666665555443
No 342
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=24.60 E-value=70 Score=30.13 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=32.3
Q ss_pred CceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc
Q 022537 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
..+.+..+++.++++++-..-.++-|...|++++.+
T Consensus 310 p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~ 345 (373)
T 3eqx_A 310 PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC-
T ss_pred CCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 467889999999999999999999999999999874
No 343
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.57 E-value=75 Score=29.18 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022537 203 DDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (295)
Q Consensus 203 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted 240 (295)
..++..|+.++..|..+...|-+.++.++++|..|.+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888777777777766666666666666543
No 344
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=24.54 E-value=1.9e+02 Score=22.01 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccc-cCceEEec
Q 022537 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS-KNHIRWKG 193 (295)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~-KN~i~W~G 193 (295)
...+-.+|+++|+..|.|+-|=.-..+.=++..=-.-.++|.|-.-|-|+=-. .+.+.|+=
T Consensus 12 ~~~ie~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~~~~liYr~ 73 (81)
T 2dk8_A 12 PVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRI 73 (81)
T ss_dssp HHHHHHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECSSSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEecCCeEEEEe
Confidence 57788889999999999987644333333445555678999998888877221 25555543
No 345
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.52 E-value=1e+02 Score=23.16 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 209 LKAEIESLHAEECRIDDSIREKQELIR 235 (295)
Q Consensus 209 Lk~El~~L~~~E~~LD~lI~~~~~~L~ 235 (295)
.|.|++.|..+...|...|..++.+|.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666665553
No 346
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=24.51 E-value=43 Score=26.12 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=34.2
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
+..=..|....++++.+.+-.-+.+.++|++.||.|.-||-
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 51 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYN 51 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHH
Confidence 33445677889999988877789999999999999999883
No 347
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=24.50 E-value=1.1e+02 Score=25.25 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=33.4
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceE
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (295)
+...++|..||+.+..+.=+++-|+.-|+|+.. ++.|.
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~-~~~i~ 224 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQDNGLIELH-RKEIL 224 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEE-TTEEE
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHHHCCCEEec-CCEEE
Confidence 578999999999999999999999999999976 44443
No 348
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=24.32 E-value=93 Score=25.85 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=33.9
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceE
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (295)
.+...++|..||+.+.-+.=+++-|+.-|+|+.. ++.|.
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~-~~~i~ 231 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIH-KKKIT 231 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEc-CCEEE
Confidence 3567999999999999999999999999999976 45444
No 349
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.18 E-value=1.2e+02 Score=24.09 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 203 DDQVARLKAEIESLHAEECRIDDSIREK 230 (295)
Q Consensus 203 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~ 230 (295)
+.....|+.|+..|..+-..||..+...
T Consensus 46 d~t~~eL~~EI~~L~~eI~~LE~iqs~a 73 (96)
T 1t3j_A 46 DMTQKHLEEEIARLSKEIDQLEKMQNNS 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344567777777777777777766543
No 350
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=24.07 E-value=80 Score=27.11 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHh-----hhhhhhhhhhhhHhhhccceecc
Q 022537 138 RKFINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~ 184 (295)
+.++..+.. +..++..++..+ ++....+++.++.|+..|||++.
T Consensus 285 ~~~l~~la~---g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 285 VDILRAIAL---GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHHHHT---TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec
Confidence 445544443 346788888877 78888999999999999999986
No 351
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.87 E-value=86 Score=23.10 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 207 ARLKAEIESLHAEECRIDDSIREKQELIRT 236 (295)
Q Consensus 207 ~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~ 236 (295)
..|++.++.|.++-.+|..++..+...+..
T Consensus 42 ~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 42 GIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554444444433
No 352
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=23.84 E-value=52 Score=26.66 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=33.3
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceE
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (295)
+...++|..||+.+.-+.=+++-|+.-|+|+... +.|.
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~-~~i~ 225 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHARG-KTVV 225 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECC-CEEE
Confidence 5689999999999999999999999999999864 4443
No 353
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=23.69 E-value=68 Score=26.18 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
=..|....++++.+..-.-+.+.++|++.||.|.-||
T Consensus 15 r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y 51 (231)
T 2qib_A 15 RQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVY 51 (231)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHH
Confidence 3567788999999888788999999999999999999
No 354
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.62 E-value=1.5e+02 Score=23.26 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHhhhhcCCCCCCCeEEEEeCCCCCeEEecC
Q 022537 215 SLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPD 280 (295)
Q Consensus 215 ~L~~~E~~LD~lI~~~~~~L~~Lted~~n~~~aYVT~eDI~~i~~f~~qTviAIKAP~gT~LEVPd 280 (295)
.|+.+-+.|.+.|..++++|+.|.+- .+.+-+..++.. +++ +.||+..|.+.-|+.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~~----P~~Vg~v~e~~d-----~~~-~iVk~s~g~~~~V~v 66 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRSP----PLLVGVVSDILE-----DGR-VVVKSSTGPKFVVNT 66 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC----CEEEEEEEEECT-----TSC-EEEEETTSCEEEECB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC----CceEEEEEEEec-----CCE-EEEEeCCCCEEEEEc
Confidence 34444455555566666667777642 444445555532 333 678888899888873
No 355
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=23.54 E-value=44 Score=26.72 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=33.1
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceE
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (295)
+...++|..||+.+..+.=+++-|+.-|+|++.. +.|.
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~-~~i~ 177 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIATAY-RRVY 177 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEET-TEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC-CEEE
Confidence 5678999999999999999999999999999874 4343
No 356
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=23.35 E-value=71 Score=24.55 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=34.0
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.+..=..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 8 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 49 (197)
T 3rd3_A 8 YDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYH 49 (197)
T ss_dssp --CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTT
T ss_pred hHhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHH
Confidence 344556677888899988877789999999999999999983
No 357
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.33 E-value=1.9e+02 Score=22.24 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022537 208 RLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (295)
Q Consensus 208 ~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lt 238 (295)
.++.+++.|+.+-..|...|..+..++..|.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777777777766654
No 358
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=23.30 E-value=52 Score=25.58 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=34.7
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
.+..-..|....++++.+.+-.-+.+.++|++.||.|.-||
T Consensus 14 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 54 (211)
T 3him_A 14 TSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVY 54 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSST
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhh
Confidence 33444578888999998888788999999999999999888
No 359
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.27 E-value=1.9e+02 Score=20.23 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 205 QVARLKAEIESLHAEECRIDDSIREKQ 231 (295)
Q Consensus 205 ~~~~Lk~El~~L~~~E~~LD~lI~~~~ 231 (295)
.+..|..+...|..+-..|.+.+.++.
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 360
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=23.24 E-value=67 Score=24.83 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
..|...+++++.+..-.-+.+.++|++.||.+.-||-
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (203)
T 3f1b_A 17 QQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYL 53 (203)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHH
Confidence 4577889999988877889999999999999999984
No 361
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=23.23 E-value=1.1e+02 Score=24.79 Aligned_cols=40 Identities=8% Similarity=0.065 Sum_probs=34.5
Q ss_pred ceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
.+...++|..||+.+..+.=+++-|+.-|+|++.. +.|.-
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~-~~i~i 219 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLALDG-KRIKI 219 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCC-CEEEE
Confidence 46789999999999999999999999999998874 44443
No 362
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=23.00 E-value=2.2e+02 Score=20.58 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=24.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEEecCC
Q 022537 154 LNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (295)
Q Consensus 154 Ln~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~ 195 (295)
|..+|..+.-....|-++++-|.+. |.... =.|.|..
T Consensus 13 l~~~A~~~~~~~~~i~~~l~~L~~~--~~~l~---~~W~G~a 49 (98)
T 3gwk_C 13 LRSSAQKYTAGSQQVTEVLNLLTQE--QAVID---ENWDGST 49 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHBCSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---cccCcHH
Confidence 6677777777777777777776652 22221 1799976
No 363
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=22.99 E-value=71 Score=24.50 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 132 SLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 132 SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
.=..|....++++.+..-.-+.+.++|++.||.|.-||
T Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y 50 (199)
T 3on2_A 13 LRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPS 50 (199)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CC
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHH
Confidence 33567788899998877778999999999999998888
No 364
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=22.48 E-value=73 Score=24.52 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
..|....++++.+.+-.-+.+.++|++.||.|.-||-
T Consensus 10 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 46 (199)
T 3qbm_A 10 ERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYR 46 (199)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHH
Confidence 4566778889988887889999999999999999983
No 365
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=22.33 E-value=85 Score=27.26 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=26.1
Q ss_pred HHHHHHhhhhh---hhhhhhhhHhhhccceecc
Q 022537 155 NRTAEVLEVQK---RRIYDITNVLEGIGLIEKT 184 (295)
Q Consensus 155 n~aA~~L~VqK---RRIYDItNVLEgIGLIeK~ 184 (295)
.++|+.+++.. ++++++++.|+..|+|++.
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 316 LNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 77788887654 8999999999999999986
No 366
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=22.27 E-value=57 Score=29.70 Aligned_cols=41 Identities=2% Similarity=0.054 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHh
Q 022537 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVL 175 (295)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVL 175 (295)
....+++.++.+.....+.+.++|+.+++++|.|+-..+-.
T Consensus 305 ~~~~~~~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~f~~~ 345 (412)
T 4fe7_A 305 PAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEE 345 (412)
T ss_dssp HHHHHHHHHHHHHGGGTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 46678889998888889999999999999999999887643
No 367
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=22.17 E-value=1.1e+02 Score=24.11 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 131 SSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 131 ~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
..=..|....++++.+..-.-+.++++|+..||.|.-||-
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 53 (203)
T 3ccy_A 14 NIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYH 53 (203)
T ss_dssp THHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTT
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeee
Confidence 3345677888889988888889999999999999999983
No 368
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.12 E-value=1.5e+02 Score=24.12 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022537 215 SLHAEECRIDDSIREKQEL 233 (295)
Q Consensus 215 ~L~~~E~~LD~lI~~~~~~ 233 (295)
.|...-+.|++.+..++++
T Consensus 109 ~l~~~l~~l~~~l~~l~~~ 127 (151)
T 2zdi_C 109 EYDEAIKKTQGALAELEKR 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 369
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=22.10 E-value=63 Score=25.42 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
..|....++++.+..-.-+.++++|++.||.|.-||
T Consensus 15 ~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY 50 (192)
T 2fq4_A 15 KAILSASYELLLESGFKAVTVDKIAERAKVSKATIY 50 (192)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHH
Confidence 457777889998888889999999999999999999
No 370
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=22.09 E-value=56 Score=25.30 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=34.6
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYR 56 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHH
Confidence 34456677889999988877789999999999999999984
No 371
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=22.02 E-value=69 Score=25.24 Aligned_cols=39 Identities=15% Similarity=0.036 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 132 SLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 132 SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.-..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 18 ~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 56 (218)
T 3gzi_A 18 NRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRY 56 (218)
T ss_dssp HHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHH
Confidence 335677778889988777789999999999999999994
No 372
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.98 E-value=2.4e+02 Score=21.56 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022537 207 ARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (295)
Q Consensus 207 ~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lte 239 (295)
+.|++=+..|+.++..|+.-|..+++...+|..
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555677777777777777777777777654
No 373
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=21.96 E-value=65 Score=24.81 Aligned_cols=37 Identities=11% Similarity=-0.033 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
..|....++++.+.+-.-+.+.++|++.||.|.-||-
T Consensus 11 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (206)
T 3dew_A 11 SRLMEVATELFAQKGFYGVSIRELAQAAGASISMISY 47 (206)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHH
Confidence 4577888999988777789999999999999999984
No 374
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=21.93 E-value=58 Score=26.59 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 131 SSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 131 ~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
..=..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 39 ~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~ 78 (214)
T 2guh_A 39 QSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIK 78 (214)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHH
Confidence 3345677889999998887889999999999999999985
No 375
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.82 E-value=87 Score=26.64 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=35.4
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
..+-..|....++++.+..-.-+.+.++|+++||.+.-||=
T Consensus 18 ~~tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~ 58 (243)
T 2g7l_A 18 ALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYV 58 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTT
T ss_pred ccCHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHH
Confidence 34556788889999988877889999999999999999994
No 376
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=21.70 E-value=76 Score=24.88 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=34.4
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
+..=..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 12 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 52 (217)
T 3nrg_A 12 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 52 (217)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 33445677889999988877789999999999999999984
No 377
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=21.68 E-value=77 Score=24.67 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
-..|....++++.+.+-..+.+.++|++.||.|.-||-
T Consensus 16 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (220)
T 3lhq_A 16 RQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYW 53 (220)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehh
Confidence 35677778899988777789999999999999999984
No 378
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=21.65 E-value=85 Score=28.50 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=32.1
Q ss_pred HHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhh----Hhhhccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITN----VLEGIGL 180 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItN----VLEgIGL 180 (295)
...+|.+.|...+.|+..++++++.|+-|-+=+. +||..|+
T Consensus 12 ~~~~l~~~~~~~~~l~~~~~~~~~aks~~s~D~~~~~~~~~~~~~ 56 (291)
T 1o57_A 12 LTNYLLTHPHELIPLTFFSERYESAKSSISEDLTIIKQTFEQQGI 56 (291)
T ss_dssp HHHHHHTSTTCCBCHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCceEeHHHHHHHhccchhhhhhhHHHHHHHHHhcCC
Confidence 3456678999999999999999999997765444 7765554
No 379
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=21.61 E-value=62 Score=26.28 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=33.7
Q ss_pred eeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEE
Q 022537 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (295)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (295)
+...++|..||+.+..+.=+++-|+.-|+|++. ++.|.-
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~i 216 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRLE-GKSVLI 216 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEec-CCEEEE
Confidence 578899999999999999999999999999986 444443
No 380
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=21.25 E-value=40 Score=26.89 Aligned_cols=38 Identities=11% Similarity=-0.102 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 132 SLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 132 SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.=..|....++++.+..-. +.+.++|++.||.|.-||-
T Consensus 13 ~r~~Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tiY~ 50 (224)
T 1t33_A 13 AKSQLIAAALAQFGEYGLH-ATTRDIAALAGQNIAAITY 50 (224)
T ss_dssp HHHHHHHHHHHHHHHHGGG-SCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHH
Confidence 3345777788999888778 9999999999999999983
No 381
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=21.24 E-value=50 Score=29.13 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=27.5
Q ss_pred eHHHHHHHhh---hhhhhhhhhhhHhhhccceeccc
Q 022537 153 DLNRTAEVLE---VQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 153 dLn~aA~~L~---VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+..+|+.+| +..++++++++-|+..|||++..
T Consensus 305 ~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 305 MYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 4567788877 46699999999999999999863
No 382
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.99 E-value=96 Score=24.91 Aligned_cols=44 Identities=11% Similarity=0.292 Sum_probs=36.2
Q ss_pred HHHHHHhCCCCceeHHHHHHHh-----hhhhhhhhhhhhHhhhccceeccc
Q 022537 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
.+++|.+++ .+...++.+.| .|.+=-+|=.++.|+..|+|.|..
T Consensus 24 Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 24 VLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEE
Confidence 556666554 68888888888 678889999999999999999874
No 383
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=20.97 E-value=81 Score=24.55 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
.|....++++.+..-.-+.+.++|++.||.|.-||
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y 41 (190)
T 3vpr_A 7 RILEEAAKLFTEKGYEATSVQDLAQALGLSKAALY 41 (190)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHH
Confidence 35566788888888788999999999999999988
No 384
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=20.93 E-value=77 Score=24.82 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=35.1
Q ss_pred CcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
.+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 49 (216)
T 3s5r_A 8 DKNTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHY 49 (216)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHH
Confidence 344456788889999988877889999999999999999994
No 385
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=20.82 E-value=1.7e+02 Score=25.07 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHH----Hhh--hhhhhhhhhhhHhhhccceeccc
Q 022537 136 LTRKFINLIQEAKDGTLDLNRTAE----VLE--VQKRRIYDITNVLEGIGLIEKTS 185 (295)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~----~L~--VqKRRIYDItNVLEgIGLIeK~~ 185 (295)
..+.++..+.. |. ++..++. .++ +....+++.++.|+..|||.+..
T Consensus 291 ~~~~~l~~la~---g~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~ 342 (357)
T 2fna_A 291 RYLNIMRTLSK---CG-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG 342 (357)
T ss_dssp HHHHHHHHHTT---CB-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHHHHHHc---CC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC
Confidence 34445555543 34 7787774 456 77889999999999999999864
No 386
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=20.75 E-value=61 Score=26.15 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=36.0
Q ss_pred CCCcCcHHHHHHHHHHH-HHhCCCCceeHHHHHHHhhhhhhhhh
Q 022537 127 CRYDSSLGLLTRKFINL-IQEAKDGTLDLNRTAEVLEVQKRRIY 169 (295)
Q Consensus 127 ~R~d~SLglLTkkFI~l-l~~a~~g~ldLn~aA~~L~VqKRRIY 169 (295)
.|....-..|..-++++ +.+.+-..+.+.++|++-||.|.-||
T Consensus 15 ~r~~~tr~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y 58 (185)
T 3o60_A 15 LRTQKTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRATFY 58 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHH
Confidence 44455556778889999 68888889999999999999999998
No 387
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=20.72 E-value=71 Score=24.99 Aligned_cols=36 Identities=8% Similarity=0.001 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
..|....++++.+..- .+.+.++|++.||.|.-||-
T Consensus 19 ~~Il~aA~~lf~~~G~-~~s~~~Ia~~agvs~~t~Y~ 54 (199)
T 2rek_A 19 DRIIEAAAAEVARHGA-DASLEEIARRAGVGSATLHR 54 (199)
T ss_dssp HHHHHHHHHHHHHHGG-GCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHhCCchHHHHH
Confidence 4566778888877666 68999999999999999993
No 388
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.57 E-value=1.6e+02 Score=29.94 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----------cccccc----cHhhhhc----------
Q 022537 201 KLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENH----------QKYMFL----TEEDIAS---------- 256 (295)
Q Consensus 201 ~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted~~n----------~~~aYV----T~eDI~~---------- 256 (295)
++..+++.||++|..-....+.|...|+++...|+.|.-|-+. +.++|- .|++|..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhccc
Confidence 5677788888888766677777777777777777777655321 123332 2333321
Q ss_pred CCCCCCCeEEEEeCCCCCeEEec
Q 022537 257 LPCFQNQTLIAIKAPQASYIEVP 279 (295)
Q Consensus 257 i~~f~~qTviAIKAP~gT~LEVP 279 (295)
+|...-|+|=+||.-|=--+ ||
T Consensus 194 ~p~~~~q~Lp~lKmrP~kD~-Vp 215 (562)
T 3ghg_A 194 LPSRDRQHLPLIKMKPVPDL-VP 215 (562)
T ss_dssp CCSCCCC----------------
T ss_pred CCccccccchhccccccccc-Cc
Confidence 24556778888887765555 65
No 389
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=20.55 E-value=1e+02 Score=28.73 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=35.0
Q ss_pred CcHHHHHHH------HHHHHHhCCCC-----ceeHHHHHHHhhhhhhhhhhhhhHhhhccceec
Q 022537 131 SSLGLLTRK------FINLIQEAKDG-----TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (295)
Q Consensus 131 ~SLglLTkk------FI~ll~~a~~g-----~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (295)
+-||++.-+ .++++.+..+. .++|+++++..++. .-||+..|+.+|++..
T Consensus 181 SdLG~~sYr~YW~~~i~~~L~~~~~~~~~~~~isi~~is~~T~i~---~~Dii~tL~~l~~l~~ 241 (280)
T 2ou2_A 181 SDLGLLSYRSYWSQTILEILMGLKSESGERPQITINEISEITSIK---KEDVISTLQYLNLINY 241 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-----------CCBHHHHHHHHCBC---HHHHHHHHHHTTCCCB
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccccCCCCceeHHHHHHHhCCC---HHHHHHHHHHCCcEEE
Confidence 457777632 45555443332 79999999999995 5799999999999963
No 390
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=20.44 E-value=92 Score=23.10 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhH
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNV 174 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNV 174 (295)
..+-+.+|...-...+| +...+|+.|||.|+-||.-+.-
T Consensus 49 ~~~E~~~i~~aL~~~~g--n~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 49 PELERTLLTTALRHTQG--HKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTT--CTTHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--CHHHHHHHHCcCHHHHHHHHHH
Confidence 33444555443333333 3568999999999999976543
No 391
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=20.33 E-value=95 Score=26.99 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=35.9
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
..+-..|....++++.+..-.-+.+..+|+++||.+.-||=
T Consensus 26 ~~tr~~Il~AA~~L~~e~G~~~~Smr~IA~~aGVs~~tlY~ 66 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEGVEAASMRRVAAELGAGTMSLYY 66 (267)
T ss_dssp EECHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHT
T ss_pred cccHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHH
Confidence 44567888999999998887889999999999999999993
No 392
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=20.25 E-value=92 Score=24.43 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhh
Q 022537 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (295)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (295)
..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 11 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 47 (199)
T 2o7t_A 11 EHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYR 47 (199)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHH
Confidence 3466778889988877889999999999999999983
No 393
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.11 E-value=1.9e+02 Score=21.43 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022537 206 VARLKAEIESLHAEECRIDDSIREKQEL 233 (295)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~~~ 233 (295)
+..|..+.+.|..+-..|-+.|..++..
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444443333
No 394
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=20.01 E-value=1.7e+02 Score=24.41 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022537 207 ARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (295)
Q Consensus 207 ~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted 240 (295)
..|+..+..+..+-..++..|..+.+++.++..-
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLETA 36 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3466666777777777788888888888777653
Done!