BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022539
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
           Domain Complexed With A C-Terminal Peptide Of Hsp70
 pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
           Domain Complexed With A C-Terminal Peptide Of Hsp70
          Length = 190

 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 123/173 (71%), Gaps = 5/173 (2%)

Query: 121 LLCTLEELYKGARKKMKIS--RVLPDHFGKPITVQE-ILKIDIKPGWKKGTKITFPEKGN 177
           L  +LEE+Y G  KKMKIS  R+ PD  GK I  ++ IL I++K GWK+GTKITFP++G+
Sbjct: 18  LRVSLEEIYSGCTKKMKISHKRLNPD--GKSIRNEDKILTIEVKKGWKEGTKITFPKEGD 75

Query: 178 QEPGLPPADLIFVVEEKPHAVFQRDGNDLVVNHKISLLEALTGLSLNLTALDGRNLTLPV 237
           Q     PAD++FV+++KPH +F+RDG+D++   +ISL EAL G ++N+  LDGR + +  
Sbjct: 76  QTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVF 135

Query: 238 TDIIQPGSEVVIPNEGMPISKDPSKKGNLIIKFDIMFPSRLTAEQKSDLKRAL 290
            D+I+PG    +P EG+P+ K P K+G+LII+F+++FP R+    ++ L++ L
Sbjct: 136 KDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 188


>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
          Length = 183

 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 123/173 (71%), Gaps = 5/173 (2%)

Query: 121 LLCTLEELYKGARKKMKIS--RVLPDHFGKPITVQE-ILKIDIKPGWKKGTKITFPEKGN 177
           L  +LEE+Y G  KKMKIS  R+ PD  GK I  ++ IL I++K GWK+GTKITFP++G+
Sbjct: 11  LRVSLEEIYSGCTKKMKISHKRLNPD--GKSIRNEDKILTIEVKKGWKEGTKITFPKEGD 68

Query: 178 QEPGLPPADLIFVVEEKPHAVFQRDGNDLVVNHKISLLEALTGLSLNLTALDGRNLTLPV 237
           Q     PAD++FV+++KPH +F+RDG+D++   +ISL EAL G ++N+  LDGR + +  
Sbjct: 69  QTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVF 128

Query: 238 TDIIQPGSEVVIPNEGMPISKDPSKKGNLIIKFDIMFPSRLTAEQKSDLKRAL 290
            D+I+PG    +P EG+P+ K P K+G+LII+F+++FP R+    ++ L++ L
Sbjct: 129 KDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 181


>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
           Domain
 pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
           Domain
 pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
           Domain Complexed With A C-Terminal Peptide Of Hsp70
 pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
           Domain Complexed With A C-Terminal Peptide Of Hsp70
          Length = 181

 Score =  159 bits (401), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 123/173 (71%), Gaps = 5/173 (2%)

Query: 121 LLCTLEELYKGARKKMKIS--RVLPDHFGKPITVQE-ILKIDIKPGWKKGTKITFPEKGN 177
           L  +LEE+Y G  KKMKIS  R+ PD  GK I  ++ IL I++K GWK+GTKITFP++G+
Sbjct: 9   LRVSLEEIYSGCTKKMKISHKRLNPD--GKSIRNEDKILTIEVKKGWKEGTKITFPKEGD 66

Query: 178 QEPGLPPADLIFVVEEKPHAVFQRDGNDLVVNHKISLLEALTGLSLNLTALDGRNLTLPV 237
           Q     PAD++FV+++KPH +F+RDG+D++   +ISL EAL G ++N+  LDGR + +  
Sbjct: 67  QTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVF 126

Query: 238 TDIIQPGSEVVIPNEGMPISKDPSKKGNLIIKFDIMFPSRLTAEQKSDLKRAL 290
            D+I+PG    +P EG+P+ K P K+G+LII+F+++FP R+    ++ L++ L
Sbjct: 127 KDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179


>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
           Cryptosporidium Parvum, Cgd2_1800
 pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
           Cryptosporidium Parvum, Cgd2_1800
          Length = 180

 Score =  155 bits (391), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 81/175 (46%), Positives = 114/175 (65%), Gaps = 4/175 (2%)

Query: 118 ETQLLCTLEELYKGARKKMKISR-VLPDHFGKPITVQEILKIDIKPGWKKGTKITFPEKG 176
           E  LL TLEELY G RKK+K++R    +H  K    + I++++IKPGWK GTK+T+  +G
Sbjct: 7   EVPLLVTLEELYLGKRKKIKVTRKRFIEH--KVRNEENIVEVEIKPGWKDGTKLTYSGEG 64

Query: 177 NQE-PGLPPADLIFVVEEKPHAVFQRDGNDLVVNHKISLLEALTGLSLNLTALDGRNLTL 235
           +QE PG  P DL+ +++ K H  F RD   L+    I L+ ALTG +  +T LD RNL +
Sbjct: 65  DQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLDNRNLQI 124

Query: 236 PVTDIIQPGSEVVIPNEGMPISKDPSKKGNLIIKFDIMFPSRLTAEQKSDLKRAL 290
           P+ +I+ P +  ++PNEG PI   P +KG+LI++FDI FP  LT EQK  +K AL
Sbjct: 125 PIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179


>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
          Length = 170

 Score =  117 bits (292), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 93/168 (55%), Gaps = 5/168 (2%)

Query: 117 IETQLLCTLEELYKGARKKMKISRVLPDHFGKPITVQEILKIDIKPGWKKGTKITFPEKG 176
           ++  L  +LE+L+ G +K  KI R  P    +   +     I +KPGWK GTKIT+  +G
Sbjct: 3   VQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQID----IQLKPGWKAGTKITYKNQG 58

Query: 177 NQEPGLPP-ADLIFVVEEKPHAVFQRDGNDLVVNHKISLLEALTGLSLNLTALDGRNLTL 235
           +  P       L FV++EK H  F+RDG+DL+    +S  E+L G S  +  +DGR L L
Sbjct: 59  DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118

Query: 236 PVTDIIQPGSEVVIPNEGMPISKDPSKKGNLIIKFDIMFPSRLTAEQK 283
                +QP      P +GMP  K+PS++GNLI+K+ + +P  L   QK
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQK 166


>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
           Hsp40 Sis1 And Hsp70 Ssa1
 pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
           Hsp40 Sis1 And Hsp70 Ssa1
 pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
           Hsp40 Sis1 And Hsp70 Ssa1
          Length = 173

 Score =  117 bits (292), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 93/168 (55%), Gaps = 5/168 (2%)

Query: 117 IETQLLCTLEELYKGARKKMKISRVLPDHFGKPITVQEILKIDIKPGWKKGTKITFPEKG 176
           ++  L  +LE+L+ G +K  KI R  P    +   +     I +KPGWK GTKIT+  +G
Sbjct: 3   VQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQID----IQLKPGWKAGTKITYKNQG 58

Query: 177 NQEPGLPP-ADLIFVVEEKPHAVFQRDGNDLVVNHKISLLEALTGLSLNLTALDGRNLTL 235
           +  P       L FV++EK H  F+RDG+DL+    +S  E+L G S  +  +DGR L L
Sbjct: 59  DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118

Query: 236 PVTDIIQPGSEVVIPNEGMPISKDPSKKGNLIIKFDIMFPSRLTAEQK 283
                +QP      P +GMP  K+PS++GNLI+K+ + +P  L   QK
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQK 166


>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
          Length = 99

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 56/78 (71%)

Query: 3  VDYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRK 62
            YY IL V R A+ DD+KK+Y+R A++WHPDKNP   + AE KFK ++EAY+VLSD  K
Sbjct: 2  ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

Query: 63 RQIYDLYGPEGLKASDFG 80
          R+IYD YG EGL  +  G
Sbjct: 62 REIYDRYGREGLTGTGTG 79


>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
          Length = 77

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/76 (57%), Positives = 60/76 (78%), Gaps = 2/76 (2%)

Query: 2  GVDYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPR 61
          G DYY  L ++RGA+++++K++Y+R A+++HPDKN      AE KFK I+EAYDVLSDPR
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG--AEEKFKEIAEAYDVLSDPR 59

Query: 62 KRQIYDLYGPEGLKAS 77
          KR+I+D YG EGLK S
Sbjct: 60 KREIFDRYGEEGLKGS 75


>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
          Length = 248

 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 80/133 (60%), Gaps = 4/133 (3%)

Query: 153 QEILKIDIKPGWKKGTKITFPEKGNQEPGLPPADLIFVVEEKPHAVFQRDGNDLVVNHKI 212
           ++IL++ ++PG K G +I F  + +Q P + P D++F+V E+PH  F+RDG+DLV   +I
Sbjct: 111 RKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEI 170

Query: 213 SLLEALTGLSLNLTALDGRNLTLPVT--DIIQPGSEVVIPNEGMPISKDPSKKGNLIIKF 270
            LL A+ G    L  + G  L + +   ++I PG   VI  +GMPI K     GNLIIKF
Sbjct: 171 DLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPK-YGGYGNLIIKF 229

Query: 271 DIMFP-SRLTAEQ 282
            I  P +  T+E+
Sbjct: 230 TIKDPENHFTSEE 242


>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
          Protein Hcg3, A Hypothetical Protein Tmp_locus_21
          Length = 82

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 54/68 (79%)

Query: 3  VDYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRK 62
          VDYY +L V R A+ + +KK+Y++LA+KWHPDKNP   ++AE +FK ++EAY+VLSD +K
Sbjct: 9  VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68

Query: 63 RQIYDLYG 70
          R IYD YG
Sbjct: 69 RDIYDRYG 76


>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
          Subfamily B Member 8
          Length = 92

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/67 (55%), Positives = 53/67 (79%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKR 63
          +YY +L V   A+ +D+KK+Y++LA++WHPDKNP   ++AE KFKL+SEAY+VLSD +KR
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69

Query: 64 QIYDLYG 70
           +YD  G
Sbjct: 70 SLYDRAG 76


>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
          Escherichia Coli N-Terminal Fragment (Residues 2-108)
          Of The Molecular Chaperone Dnaj, 20 Structures
          Length = 107

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 53/67 (79%), Gaps = 1/67 (1%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKR 63
          DYY IL VS+ A E +++K+YKRLAMK+HPD+N   +++AEAKFK I EAY+VL+D +KR
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG-DKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 64 QIYDLYG 70
            YD YG
Sbjct: 63 AAYDQYG 69


>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
          N-Terminal Fragment (Residues 1-104) Of The Molecular
          Chaperone Dnaj, Nmr, 20 Structures
          Length = 103

 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 53/67 (79%), Gaps = 1/67 (1%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKR 63
          DYY IL VS+ A E +++K+YKRLAMK+HPD+N   +++AEAKFK I EAY+VL+D +KR
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG-DKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 64 QIYDLYG 70
            YD YG
Sbjct: 63 AAYDQYG 69


>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
          N-Terminal Fragment (Residues 1-78) Of The Molecular
          Chaperone Dnaj, Nmr, 20 Structures
          Length = 77

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 53/67 (79%), Gaps = 1/67 (1%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKR 63
          DYY IL VS+ A E +++K+YKRLAMK+HPD+N   +++AEAKFK I EAY+VL+D +KR
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG-DKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 64 QIYDLYG 70
            YD YG
Sbjct: 63 AAYDQYG 69


>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
          B Menber 12
          Length = 78

 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 50/67 (74%), Gaps = 2/67 (2%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKR 63
          DYY IL VSRGA+++DLKK+Y+RLA+K+HPDKN A    A   FK I  AY VLS+P KR
Sbjct: 8  DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG--ATEAFKAIGTAYAVLSNPEKR 65

Query: 64 QIYDLYG 70
          + YD +G
Sbjct: 66 KQYDQFG 72


>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
          C Menber 5
          Length = 109

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 55/80 (68%), Gaps = 2/80 (2%)

Query: 2  GVDYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPR 61
          G   Y++L + + AT DD+KKSY++LA+K+HPDKNP  N +A  KFK I+ A+ +L+D  
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNP-DNPEAADKFKEINNAHAILTDAT 74

Query: 62 KRQIYDLYGPEGLK-ASDFG 80
          KR IYD YG  GL  A  FG
Sbjct: 75 KRNIYDKYGSLGLYVAEQFG 94


>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
          Length = 73

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 52/68 (76%), Gaps = 4/68 (5%)

Query: 5  YYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQ 64
          YY++L V   A++++LKK+Y+++A+K+HPDKNP   +Q    FK IS+AY+VLSD +KRQ
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ----FKQISQAYEVLSDEKKRQ 65

Query: 65 IYDLYGPE 72
          IYD  G E
Sbjct: 66 IYDQGGEE 73


>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
          Domain From Homo Sapiens
          Length = 71

 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 52/68 (76%), Gaps = 4/68 (5%)

Query: 5  YYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQ 64
          YY++L V   AT+++LKK+Y++LA+K+HPDKNP   +    KFK IS+AY+VLSD +KR+
Sbjct: 8  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLSDAKKRE 63

Query: 65 IYDLYGPE 72
          +YD  G +
Sbjct: 64 LYDKGGEQ 71


>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
          B Menber 9
          Length = 88

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 49/66 (74%), Gaps = 2/66 (3%)

Query: 5  YYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQ 64
          YY+IL V + A+E  +KK++ +LAMK+HPDKN + +  AEAKF+ I+EAY+ LSD  +R+
Sbjct: 9  YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD--AEAKFREIAEAYETLSDANRRK 66

Query: 65 IYDLYG 70
           YD  G
Sbjct: 67 EYDTLG 72


>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
          Saccharomyces Cerevisiae
          Length = 92

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 50/71 (70%), Gaps = 4/71 (5%)

Query: 6  YNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQI 65
          Y++L VS  A E +LKK Y++ A+K+HPDK     +    KFK ISEA+++L+DP+KR+I
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE----KFKEISEAFEILNDPQKREI 66

Query: 66 YDLYGPEGLKA 76
          YD YG E  ++
Sbjct: 67 YDQYGLEAARS 77


>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
          Protein, Mouse Hypothetical Mkiaa0962
          Length = 88

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 2/70 (2%)

Query: 1  MGVDYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDP 60
          +  D Y +L VSR A++ D+KK+YK+LA +WHPDKN   +  AE +F  IS+AY++LS+ 
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKN--KDPGAEDRFIQISKAYEILSNE 72

Query: 61 RKRQIYDLYG 70
           KR  YD YG
Sbjct: 73 EKRTNYDHYG 82


>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
          Human Tid1 Protein
          Length = 79

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 1/67 (1%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKR 63
          DYY IL V R A++ ++KK+Y +LA K+HPD N   + +A+ KF  ++EAY+VLSD  KR
Sbjct: 8  DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNK-DDPKAKEKFSQLAEAYEVLSDEVKR 66

Query: 64 QIYDLYG 70
          + YD YG
Sbjct: 67 KQYDAYG 73


>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
           Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
           Resolution.
 pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
           Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
           Resolution
          Length = 329

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 122/283 (43%), Gaps = 19/283 (6%)

Query: 4   DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKR 63
           DYY IL V        +K +Y+RLA K+HPD +   +  AEAKFK ++EA++VL D ++R
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEND--AEAKFKDLAEAWEVLKDEQRR 86

Query: 64  QIYDLYGPEGLKASDFGTPSYHHP-----HDTKPCATRXXXXXXHRXXXXXXXXXXXXIE 118
             YD    +      FG     H       D     +       H+            +E
Sbjct: 87  AEYDQLW-QHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQ-RRRQHAARGHDLE 144

Query: 119 TQLLCTLEELYKGARKKMKISRVLPDH--FGK-PITVQEILKIDIKPGWKKGTKITFPEK 175
            ++   LEE    A +   IS  LP +  FG       + L + I  G   G +I    +
Sbjct: 145 IEVAVFLEETL--AEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQ 202

Query: 176 GN-QEPGLPPADLIFVVEEKPHAVFQRDGNDLVVNHKISLLEALTGLSLNLTALDGRNLT 234
           G   E G P  DL  V+   PH +F   G++L +   ++  EA  G  + +  L   ++ 
Sbjct: 203 GTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLK-ESIL 261

Query: 235 LPVTDIIQPGSEVVIPNEGMPISKDPSKKGNLIIKFDIMFPSR 277
           L V    Q G  + I  +G+ +SK  +  G+L     I+ P++
Sbjct: 262 LTVPPGSQAGQRLRIKGKGL-VSK--THTGDLFAVIKIVMPTK 301


>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
          Length = 780

 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 1/77 (1%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKR 63
          ++Y++L VS+ A+  ++++++K+LA+K HPDKNP  N  A   F  I+ AY+VL D   R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNP-NNPNAHGDFLKINRAYEVLKDEDLR 80

Query: 64 QIYDLYGPEGLKASDFG 80
          + YD YG +GL+ +  G
Sbjct: 81 KKYDKYGEKGLEDNQGG 97


>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
 pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
          Length = 210

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 1/77 (1%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKR 63
          ++Y++L VS+ A+  ++++++K+LA+K HPDKNP  N  A   F  I+ AY+VL D   R
Sbjct: 3  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNP-NNPNAHGDFLKINRAYEVLKDEDLR 61

Query: 64 QIYDLYGPEGLKASDFG 80
          + YD YG +GL+ +  G
Sbjct: 62 KKYDKYGEKGLEDNQGG 78


>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
 pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
          Length = 121

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 199 FQRDGNDLVVNHKISLLEALTGLSLNLTALDGRNLTLPVT--DIIQPGSEVVIPNEGMPI 256
           F+RDG+DLV   +I LL A+ G    L  + G  L + +   ++I PG   VI  +GMPI
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 257 SKDPSKKGNLIIKFDIMFP-SRLTAEQ 282
            K     GNLIIKF I FP +  T+E+
Sbjct: 62  PKY-GGYGNLIIKFTIKFPENHFTSEE 87


>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
          Length = 450

 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 2/66 (3%)

Query: 4   DYYNILKVSRGATEDDLKKSYKRLAMKWHPD--KNPATNQQAEAKFKLISEAYDVLSDPR 61
           DYY IL V R A + ++ K+Y++LA++WHPD  +N    ++AE KF  I+ A +VLSDP 
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442

Query: 62  KRQIYD 67
            R+ +D
Sbjct: 443 XRKKFD 448


>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
 pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
 pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
          Length = 450

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 2/66 (3%)

Query: 4   DYYNILKVSRGATEDDLKKSYKRLAMKWHPD--KNPATNQQAEAKFKLISEAYDVLSDPR 61
           DYY IL V R A + ++ K+Y++LA++WHPD  +N    ++AE KF  I+ A +VLSDP 
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442

Query: 62  KRQIYD 67
            R+ +D
Sbjct: 443 MRKKFD 448


>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
          Escherichia Coli Cbpa
          Length = 73

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 6/66 (9%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPD--KNPATNQQAEAKFKLISEAYDVLSDPR 61
          DYY I+ V        +K +Y+RLA K+HPD  K P     AEA+FK ++EA++VLSD +
Sbjct: 6  DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP----DAEARFKEVAEAWEVLSDEQ 61

Query: 62 KRQIYD 67
          +R  YD
Sbjct: 62 RRAEYD 67


>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
          Williams- Beuren Syndrome Chromosome Region 18 Protein
          Length = 99

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 6  YNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQI 65
          Y++L V   AT+  +K +Y R    +HPD+N  + + AE +F  IS+AY VL     R+ 
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAE-RFTRISQAYVVLGSATLRRK 78

Query: 66 YD 67
          YD
Sbjct: 79 YD 80


>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
          Protein
          Length = 94

 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPA-----TNQQAEAKFKLISEAYDVLS 58
          D+Y+IL     A   DLK+ Y++L + +HPDK  A     T ++   KF  I +A+ +L 
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 59 DPRKRQIYDL 68
          +   ++ YDL
Sbjct: 77 NEETKKKYDL 86


>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
          Precursor From C.Elegans
          Length = 109

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 6  YNILKVSRGATEDD-LKKSYKRLAMKWHPD--KNPATNQQAEAKFKLISEAYDVLSDPRK 62
          Y++L+V+R   +   L K+Y+ LA K HPD  KN      AE +F++I+ AY+ L D   
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77

Query: 63 RQIYDLY 69
          +  YD Y
Sbjct: 78 KTNYDYY 84


>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
          Length = 155

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKN----PA-TNQQAEAKFKLISEAYDVLS 58
          D+Y+IL     A   DLK+ Y++L + +HPDK     PA T ++   KF  I +A+ +L 
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70

Query: 59 DPRKRQIYDL 68
          +   ++ YDL
Sbjct: 71 NEETKREYDL 80


>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
          C Menber 12
          Length = 112

 Score = 36.6 bits (83), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKR 63
          DYY +L     ++ + +   +K  A++ HPDK+P  N +A   F+ + +A ++L++   R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHP-ENPKAVETFQKLQKAKEILTNEESR 79

Query: 64 QIYDLY 69
            YD +
Sbjct: 80 ARYDHW 85


>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
          Ras- Associated Protein Rap1
          Length = 90

 Score = 36.6 bits (83), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 4  DYYNILKVSRGATEDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVL 57
          D +++L V  GA+ D++ K+Y++LA+  HPDK  A    +E  FK +  A   L
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG--SEDAFKAVVNARTAL 79


>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
          Length = 88

 Score = 35.4 bits (80), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 17 EDDLKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVL 57
          E + KK  +RL +KWHPDKNP  +  A   FK +    + L
Sbjct: 30 ESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70


>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
 pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
          Length = 175

 Score = 31.2 bits (69), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 20 LKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDL 68
          L+K Y++L  + HPD      QQ   +   +++AY  L DP +R  Y L
Sbjct: 27 LRKEYRQLQAQHHPD----MAQQGSEQSSTLNQAYHTLKDPLRRSQYML 71


>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
          Clone
 pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
          Clone
          Length = 181

 Score = 31.2 bits (69), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 20 LKKSYKRLAMKWHPDKNPATNQQAEAKFKLISEAYDVLSDPRKRQIYDL 68
          L+K Y++L  + HPD      QQ   +   +++AY  L DP +R  Y L
Sbjct: 35 LRKEYRQLQAQHHPD----MAQQGSEQSSTLNQAYHTLKDPLRRSQYML 79


>pdb|1NEK|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
           Ubiquinone Bound
 pdb|1NEN|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
           Dinitrophenol-17 Inhibitor Co-Crystallized At The
           Ubiquinone Binding Site
 pdb|2ACZ|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
           Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
           Binding Site
 pdb|2WDQ|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
           Carboxin Bound
 pdb|2WDQ|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
           Carboxin Bound
 pdb|2WDQ|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
           Carboxin Bound
 pdb|2WDV|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
           Empty Quinone-Binding Pocket
 pdb|2WDV|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
           Empty Quinone-Binding Pocket
 pdb|2WDV|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
           Empty Quinone-Binding Pocket
 pdb|2WDR|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
           Pentachlorophenol Bound
 pdb|2WDR|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
           Pentachlorophenol Bound
 pdb|2WDR|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
           Pentachlorophenol Bound
 pdb|2WS3|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
           Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
 pdb|2WS3|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
           Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
 pdb|2WS3|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
           Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
 pdb|2WU2|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
           Oxidoreductase (Sqr) Sdhc His84met Mutant
 pdb|2WU2|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
           Oxidoreductase (Sqr) Sdhc His84met Mutant
 pdb|2WU2|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
           Oxidoreductase (Sqr) Sdhc His84met Mutant
 pdb|2WU5|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
           Oxidoreductase (Sqr) Sdhd His71met Mutant
 pdb|2WU5|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
           Oxidoreductase (Sqr) Sdhd His71met Mutant
 pdb|2WU5|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
           Oxidoreductase (Sqr) Sdhd His71met Mutant
          Length = 238

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 197 AVFQRDGNDLVVNHKISLLEALTGL-SLNLTALDGRNLTLPVTDIIQPGSEVVI-PNEGM 254
           A+ Q    D  ++ + S  E + G   LN+   +G     P++ + QPG ++VI P  G+
Sbjct: 38  ALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGL 97

Query: 255 PISKD 259
           P+ +D
Sbjct: 98  PVIRD 102


>pdb|2WP9|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
           Oxidoreductase (Sqr) Sdhb His207thr Mutant
 pdb|2WP9|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
           Oxidoreductase (Sqr) Sdhb His207thr Mutant
 pdb|2WP9|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
           Oxidoreductase (Sqr) Sdhb His207thr Mutant
          Length = 238

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 197 AVFQRDGNDLVVNHKISLLEALTGL-SLNLTALDGRNLTLPVTDIIQPGSEVVI-PNEGM 254
           A+ Q    D  ++ + S  E + G   LN+   +G     P++ + QPG ++VI P  G+
Sbjct: 38  ALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGL 97

Query: 255 PISKD 259
           P+ +D
Sbjct: 98  PVIRD 102


>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1
          J-Domain
          Length = 106

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 6/44 (13%)

Query: 18 DDLKKSYKRLAMKWHPD----KNPATNQQ--AEAKFKLISEAYD 55
          + ++KSY+R  +  HPD    K  + NQ+  AE  F+L+ EA+D
Sbjct: 55 NAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWD 98


>pdb|3BB8|A Chain A, E1 Dehydrase H220k Mutant
 pdb|3BB8|B Chain B, E1 Dehydrase H220k Mutant
          Length = 437

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 214 LLEALTGLSLNLTALDGRNLTLPVTDI--IQPGSEVVIPNEGMPISKDPSKKGNLIIKF- 270
           +L   +G S NL AL    LT P   +  ++PG EV+    G P + +P+ +  LI  F 
Sbjct: 80  VLTTTSGSSANLLALTA--LTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFV 137

Query: 271 DIMFPS 276
           D+  P+
Sbjct: 138 DVDIPT 143


>pdb|3BCX|A Chain A, E1 Dehydrase
 pdb|3BCX|B Chain B, E1 Dehydrase
          Length = 437

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 214 LLEALTGLSLNLTALDGRNLTLPVTDI--IQPGSEVVIPNEGMPISKDPSKKGNLIIKF- 270
           +L   +G S NL AL    LT P   +  ++PG EV+    G P + +P+ +  LI  F 
Sbjct: 80  VLTTTSGSSANLLALTA--LTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFV 137

Query: 271 DIMFPS 276
           D+  P+
Sbjct: 138 DVDIPT 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.137    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,840,103
Number of Sequences: 62578
Number of extensions: 351436
Number of successful extensions: 1118
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 51
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)