Query 022540
Match_columns 295
No_of_seqs 361 out of 3162
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:19:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10770 peptidyl-prolyl cis-t 99.9 4E-26 8.6E-31 213.8 3.4 185 11-197 168-384 (413)
2 PF13616 Rotamase_3: PPIC-type 99.9 2.3E-22 5E-27 155.6 8.7 95 85-179 11-117 (117)
3 cd01526 RHOD_ThiF Member of th 99.9 1.8E-22 3.8E-27 157.6 7.4 109 184-295 7-122 (122)
4 cd01518 RHOD_YceA Member of th 99.9 2.4E-22 5.2E-27 151.6 5.8 96 186-285 3-100 (101)
5 cd01533 4RHOD_Repeat_2 Member 99.9 4.3E-22 9.4E-27 152.3 5.7 100 184-288 9-109 (109)
6 cd01523 RHOD_Lact_B Member of 99.9 7.7E-22 1.7E-26 148.5 6.6 95 187-285 1-99 (100)
7 cd01527 RHOD_YgaP Member of th 99.8 3.8E-21 8.3E-26 144.4 8.2 96 186-290 3-98 (99)
8 PRK15441 peptidyl-prolyl cis-t 99.8 5.8E-21 1.3E-25 141.6 9.0 89 88-178 3-92 (93)
9 PRK00162 glpE thiosulfate sulf 99.8 3E-21 6.5E-26 147.4 6.0 101 184-292 4-104 (108)
10 TIGR02933 nifM_nitrog nitrogen 99.8 2.9E-21 6.3E-26 169.3 5.8 126 65-196 101-235 (256)
11 cd01534 4RHOD_Repeat_3 Member 99.8 5.7E-21 1.2E-25 142.4 6.1 94 187-285 1-94 (95)
12 cd01528 RHOD_2 Member of the R 99.8 1.2E-20 2.6E-25 142.3 6.3 99 187-288 2-100 (101)
13 KOG1530 Rhodanese-related sulf 99.8 1.3E-20 2.7E-25 142.9 6.3 104 184-291 22-134 (136)
14 PLN02160 thiosulfate sulfurtra 99.8 3.1E-20 6.7E-25 147.4 8.3 104 184-292 14-127 (136)
15 PTZ00356 peptidyl-prolyl cis-t 99.8 6.9E-20 1.5E-24 141.2 9.4 91 86-176 2-114 (115)
16 cd01525 RHOD_Kc Member of the 99.8 5.2E-20 1.1E-24 139.7 8.2 96 187-285 1-104 (105)
17 PF00639 Rotamase: PPIC-type P 99.8 1.3E-19 2.7E-24 135.1 9.0 84 94-177 1-95 (95)
18 cd01444 GlpE_ST GlpE sulfurtra 99.8 4.4E-20 9.6E-25 137.6 6.4 92 187-285 2-95 (96)
19 cd01447 Polysulfide_ST Polysul 99.8 6.7E-20 1.5E-24 138.4 6.8 97 187-287 1-102 (103)
20 cd01524 RHOD_Pyr_redox Member 99.8 6.1E-20 1.3E-24 135.5 6.1 88 188-285 2-89 (90)
21 cd01519 RHOD_HSP67B2 Member of 99.8 8.4E-20 1.8E-24 138.7 7.0 94 188-285 2-105 (106)
22 cd01529 4RHOD_Repeats Member o 99.8 1.1E-19 2.3E-24 135.8 6.8 83 203-285 11-95 (96)
23 cd01521 RHOD_PspE2 Member of t 99.8 1.4E-19 3.1E-24 138.6 7.2 102 184-291 7-110 (110)
24 PRK05320 rhodanese superfamily 99.8 4.4E-19 9.5E-24 154.9 9.2 104 185-288 110-217 (257)
25 cd01530 Cdc25 Cdc25 phosphatas 99.8 1.6E-19 3.5E-24 140.5 5.7 100 186-285 3-120 (121)
26 cd01522 RHOD_1 Member of the R 99.8 1.8E-19 3.9E-24 139.5 5.9 98 187-287 1-105 (117)
27 smart00450 RHOD Rhodanese Homo 99.8 4.5E-19 9.7E-24 132.2 7.5 88 203-290 3-100 (100)
28 KOG3259 Peptidyl-prolyl cis-tr 99.8 8.5E-19 1.8E-23 134.4 8.9 92 85-176 50-162 (163)
29 PRK01415 hypothetical protein; 99.8 2.3E-19 5.1E-24 154.5 6.5 101 185-289 112-214 (247)
30 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 3.8E-19 8.2E-24 145.2 7.0 106 182-291 33-162 (162)
31 cd01520 RHOD_YbbB Member of th 99.8 2.5E-19 5.4E-24 141.0 5.0 94 187-286 1-126 (128)
32 PRK03002 prsA peptidylprolyl i 99.8 4.8E-19 1E-23 157.6 6.9 90 89-180 136-227 (285)
33 COG0607 PspE Rhodanese-related 99.8 1.1E-18 2.5E-23 133.1 7.7 91 203-295 19-110 (110)
34 PRK07878 molybdopterin biosynt 99.8 8.3E-19 1.8E-23 162.7 8.2 106 185-295 287-392 (392)
35 PRK02998 prsA peptidylprolyl i 99.8 7.3E-19 1.6E-23 156.3 7.5 90 89-180 134-225 (283)
36 cd01448 TST_Repeat_1 Thiosulfa 99.8 1.3E-18 2.8E-23 135.7 7.9 98 187-288 2-122 (122)
37 PRK04405 prsA peptidylprolyl i 99.8 1.4E-18 3E-23 155.2 8.3 91 88-180 143-238 (298)
38 cd01449 TST_Repeat_2 Thiosulfa 99.8 1.9E-18 4.1E-23 133.8 7.6 94 188-285 2-117 (118)
39 PRK10770 peptidyl-prolyl cis-t 99.8 5.2E-19 1.1E-23 165.7 5.2 116 64-181 132-258 (413)
40 cd01532 4RHOD_Repeat_1 Member 99.8 1.4E-18 3.1E-23 128.7 6.3 80 203-285 9-91 (92)
41 TIGR02981 phageshock_pspE phag 99.7 1E-18 2.3E-23 131.2 5.0 81 203-286 17-97 (101)
42 cd01531 Acr2p Eukaryotic arsen 99.7 1.1E-18 2.4E-23 134.2 4.5 98 186-286 3-111 (113)
43 PRK07411 hypothetical protein; 99.7 2.4E-18 5.2E-23 159.3 7.4 108 185-295 282-390 (390)
44 cd01535 4RHOD_Repeat_4 Member 99.7 2.2E-18 4.7E-23 138.2 5.9 86 203-292 10-95 (145)
45 cd00158 RHOD Rhodanese Homolog 99.7 4.5E-18 9.8E-23 124.4 6.3 81 203-285 9-89 (89)
46 PRK00142 putative rhodanese-re 99.7 3.4E-18 7.4E-23 153.5 6.8 102 184-289 111-214 (314)
47 PF00581 Rhodanese: Rhodanese- 99.7 1.1E-18 2.3E-23 133.6 3.0 95 188-286 1-112 (113)
48 PRK03095 prsA peptidylprolyl i 99.7 8.1E-18 1.8E-22 149.8 8.8 90 89-180 132-223 (287)
49 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 3.7E-18 8E-23 131.4 4.1 99 186-285 3-112 (113)
50 KOG3258 Parvulin-like peptidyl 99.7 2.4E-17 5.2E-22 119.9 7.7 91 84-177 34-131 (133)
51 PRK10287 thiosulfate:cyanide s 99.7 7.9E-18 1.7E-22 127.0 5.1 79 204-285 20-98 (104)
52 PRK00059 prsA peptidylprolyl i 99.7 1E-17 2.2E-22 152.9 4.8 112 65-181 173-290 (336)
53 PRK08762 molybdopterin biosynt 99.7 2.4E-17 5.3E-22 152.4 6.3 101 185-292 3-103 (376)
54 cd01445 TST_Repeats Thiosulfat 99.7 1.9E-16 4.1E-21 126.0 7.6 99 187-285 1-137 (138)
55 PRK10788 periplasmic folding c 99.6 1.2E-16 2.5E-21 157.2 4.5 95 84-181 265-361 (623)
56 PRK11493 sseA 3-mercaptopyruva 99.6 5.7E-16 1.2E-20 137.9 8.2 102 186-291 6-133 (281)
57 PLN02723 3-mercaptopyruvate su 99.6 4.5E-16 9.7E-21 140.8 7.1 98 187-288 192-311 (320)
58 COG2897 SseA Rhodanese-related 99.6 9.4E-16 2E-20 134.6 7.7 99 187-289 158-277 (285)
59 PRK12450 foldase protein PrsA; 99.6 2.5E-16 5.5E-21 141.6 4.2 88 89-180 148-244 (309)
60 TIGR03167 tRNA_sel_U_synt tRNA 99.6 3.2E-16 6.8E-21 140.3 4.4 87 205-292 3-120 (311)
61 PRK11493 sseA 3-mercaptopyruva 99.6 9.8E-16 2.1E-20 136.4 7.4 100 189-292 157-278 (281)
62 PRK01326 prsA foldase protein 99.6 7.9E-16 1.7E-20 138.5 6.1 88 89-180 145-241 (310)
63 PLN02723 3-mercaptopyruvate su 99.6 2.8E-15 6.1E-20 135.6 8.3 103 186-292 23-150 (320)
64 PRK05597 molybdopterin biosynt 99.6 2.1E-15 4.6E-20 138.1 7.5 81 204-286 274-354 (355)
65 PRK09629 bifunctional thiosulf 99.6 2.9E-15 6.2E-20 145.5 8.7 102 186-291 10-127 (610)
66 COG1054 Predicted sulfurtransf 99.6 5.9E-16 1.3E-20 133.7 3.2 167 94-289 38-215 (308)
67 TIGR02925 cis_trans_EpsD pepti 99.6 3.3E-15 7.2E-20 129.4 6.8 112 65-181 116-228 (232)
68 PRK11784 tRNA 2-selenouridine 99.6 1.1E-15 2.4E-20 138.7 3.8 97 189-291 5-133 (345)
69 PRK05600 thiamine biosynthesis 99.6 4.2E-15 9E-20 136.6 6.5 93 186-283 272-370 (370)
70 PRK09629 bifunctional thiosulf 99.6 6.6E-15 1.4E-19 143.1 7.8 98 186-287 148-264 (610)
71 cd01446 DSP_MapKP N-terminal r 99.5 3E-14 6.6E-19 112.5 5.4 98 187-286 2-126 (132)
72 KOG2017 Molybdopterin synthase 99.5 2.3E-14 5E-19 125.7 4.2 109 184-295 316-427 (427)
73 PRK01269 tRNA s(4)U8 sulfurtra 99.3 3.1E-12 6.7E-17 121.8 6.1 73 203-279 406-482 (482)
74 COG2897 SseA Rhodanese-related 99.3 1.1E-11 2.3E-16 109.1 8.0 107 186-292 12-137 (285)
75 COG0760 SurA Parvulin-like pep 99.2 5.9E-12 1.3E-16 112.6 2.0 94 87-182 166-266 (320)
76 KOG3772 M-phase inducer phosph 99.1 3.3E-11 7.3E-16 106.1 4.4 106 182-287 153-276 (325)
77 KOG1529 Mercaptopyruvate sulfu 98.9 2.3E-09 4.9E-14 92.8 5.3 83 203-286 171-275 (286)
78 KOG1529 Mercaptopyruvate sulfu 98.4 6.2E-07 1.3E-11 77.8 7.2 102 187-292 7-135 (286)
79 COG5105 MIH1 Mitotic inducer, 98.2 7.6E-07 1.7E-11 77.9 1.8 102 181-285 238-356 (427)
80 PF13145 Rotamase_2: PPIC-type 98.0 1.6E-06 3.4E-11 66.5 0.5 89 85-180 18-110 (121)
81 PRK10788 periplasmic folding c 97.9 6E-05 1.3E-09 74.6 10.8 145 30-180 290-475 (623)
82 PF00639 Rotamase: PPIC-type P 97.9 1.9E-06 4.2E-11 63.8 -1.2 87 9-95 5-93 (95)
83 PF13616 Rotamase_3: PPIC-type 97.8 7E-06 1.5E-10 63.3 0.5 83 13-96 29-114 (117)
84 KOG3259 Peptidyl-prolyl cis-tr 97.6 1.9E-05 4.1E-10 61.4 0.9 76 17-92 82-158 (163)
85 KOG3258 Parvulin-like peptidyl 97.4 0.00024 5.2E-09 52.4 3.9 47 32-81 61-108 (133)
86 PTZ00356 peptidyl-prolyl cis-t 97.2 7.1E-05 1.5E-09 57.5 -0.3 80 15-95 32-113 (115)
87 PRK15441 peptidyl-prolyl cis-t 97.0 0.00055 1.2E-08 50.4 2.5 69 26-96 20-90 (93)
88 COG2603 Predicted ATPase [Gene 96.7 0.00045 9.9E-09 60.3 0.4 90 190-285 6-127 (334)
89 TIGR02933 nifM_nitrog nitrogen 96.6 0.00057 1.2E-08 60.0 0.6 74 22-96 143-218 (256)
90 PRK04405 prsA peptidylprolyl i 96.4 0.0032 7E-08 56.5 4.0 70 28-98 162-236 (298)
91 PRK03095 prsA peptidylprolyl i 96.0 0.0046 1E-07 55.3 2.5 71 27-98 149-221 (287)
92 PRK02998 prsA peptidylprolyl i 95.5 0.0068 1.5E-07 54.0 1.8 72 26-98 150-223 (283)
93 KOG1093 Predicted protein kina 95.0 0.0087 1.9E-07 57.0 0.9 97 182-286 619-720 (725)
94 PRK03002 prsA peptidylprolyl i 94.9 0.026 5.7E-07 50.3 3.7 68 29-97 155-224 (285)
95 PRK00142 putative rhodanese-re 94.4 0.0016 3.5E-08 58.8 -5.3 81 189-275 18-105 (314)
96 TIGR01244 conserved hypothetic 93.4 0.095 2.1E-06 41.3 3.6 28 245-272 85-113 (135)
97 PRK01326 prsA foldase protein 92.9 0.085 1.8E-06 47.7 3.0 52 29-83 164-217 (310)
98 PRK12450 foldase protein PrsA; 92.8 0.087 1.9E-06 47.6 3.0 68 28-98 166-242 (309)
99 PRK00059 prsA peptidylprolyl i 91.4 0.18 3.9E-06 46.0 3.3 72 26-98 212-287 (336)
100 COG0760 SurA Parvulin-like pep 88.4 0.14 3.1E-06 45.2 0.0 59 34-92 196-256 (320)
101 PF04273 DUF442: Putative phos 86.5 0.89 1.9E-05 34.5 3.4 22 245-266 85-106 (110)
102 KOG1717 Dual specificity phosp 78.4 1.1 2.3E-05 39.2 1.2 94 187-289 6-126 (343)
103 PF01451 LMWPc: Low molecular 74.7 3.2 7E-05 32.4 3.0 36 249-284 1-41 (138)
104 TIGR03167 tRNA_sel_U_synt tRNA 73.9 1.3 2.7E-05 40.2 0.5 67 187-259 138-209 (311)
105 PF09992 DUF2233: Predicted pe 67.3 6.7 0.00015 31.8 3.4 40 244-283 98-142 (170)
106 smart00195 DSPc Dual specifici 65.9 8.8 0.00019 29.7 3.8 29 244-272 76-107 (138)
107 TIGR02925 cis_trans_EpsD pepti 65.0 5.3 0.00012 34.2 2.5 59 36-96 164-223 (232)
108 COG3453 Uncharacterized protei 63.8 9.2 0.0002 29.4 3.2 21 245-265 86-106 (130)
109 KOG3636 Uncharacterized conser 61.9 8 0.00017 36.4 3.1 81 204-285 326-427 (669)
110 smart00226 LMWPc Low molecular 57.9 13 0.00029 28.9 3.5 37 249-285 1-38 (140)
111 PF03853 YjeF_N: YjeF-related 56.2 20 0.00044 29.1 4.4 32 244-276 23-57 (169)
112 cd00127 DSPc Dual specificity 55.7 16 0.00035 28.0 3.6 28 244-271 79-109 (139)
113 PF00782 DSPc: Dual specificit 54.7 17 0.00038 27.7 3.6 29 244-272 71-102 (133)
114 PF05706 CDKN3: Cyclin-depende 54.5 5.7 0.00012 32.4 0.8 30 241-270 128-159 (168)
115 PRK10126 tyrosine phosphatase; 53.8 23 0.00049 28.1 4.2 37 247-284 3-40 (147)
116 TIGR00853 pts-lac PTS system, 52.7 19 0.00041 26.3 3.3 35 246-281 3-41 (95)
117 PLN02727 NAD kinase 52.4 15 0.00033 37.9 3.6 78 185-268 267-365 (986)
118 TIGR02689 ars_reduc_gluta arse 51.5 24 0.00052 27.1 3.9 37 247-283 1-38 (126)
119 PTZ00393 protein tyrosine phos 50.1 8.5 0.00018 33.3 1.2 29 244-272 168-198 (241)
120 PRK09590 celB cellobiose phosp 49.7 20 0.00044 26.7 3.1 34 248-282 3-40 (104)
121 PRK11391 etp phosphotyrosine-p 48.8 26 0.00057 27.7 3.8 38 247-285 3-41 (144)
122 TIGR03372 putres_am_tran putre 47.9 24 0.00052 33.6 4.1 42 244-285 131-177 (442)
123 cd00115 LMWPc Substituted upda 47.6 23 0.0005 27.6 3.3 37 248-284 2-40 (141)
124 PF03162 Y_phosphatase2: Tyros 46.7 22 0.00049 28.8 3.2 28 245-272 90-119 (164)
125 COG2453 CDC14 Predicted protei 46.1 23 0.0005 29.1 3.2 29 243-271 102-133 (180)
126 cd05564 PTS_IIB_chitobiose_lic 45.3 26 0.00057 25.6 3.1 33 248-281 1-37 (96)
127 cd05565 PTS_IIB_lactose PTS_II 45.2 25 0.00053 26.1 2.9 35 248-283 2-40 (99)
128 PLN03050 pyridoxine (pyridoxam 45.0 34 0.00073 29.8 4.2 30 247-277 61-93 (246)
129 PTZ00242 protein tyrosine phos 44.9 29 0.00062 28.2 3.5 27 244-270 96-124 (166)
130 PRK13696 hypothetical protein; 44.2 32 0.0007 23.1 3.0 30 93-126 4-33 (62)
131 COG1986 Inosine/xanthosine tri 44.2 26 0.00057 28.6 3.1 42 105-146 109-151 (175)
132 PF02302 PTS_IIB: PTS system, 44.2 28 0.00062 24.5 3.1 25 248-272 1-30 (90)
133 KOG0330 ATP-dependent RNA heli 43.4 31 0.00068 32.2 3.8 37 245-282 299-335 (476)
134 KOG0333 U5 snRNP-like RNA heli 41.9 32 0.0007 33.3 3.8 36 245-281 516-551 (673)
135 PLN02482 glutamate-1-semialdeh 41.7 29 0.00064 33.3 3.6 39 248-286 156-196 (474)
136 PRK03941 NTPase; Reviewed 41.4 33 0.00072 28.2 3.4 42 105-146 108-150 (174)
137 TIGR00258 inosine/xanthosine t 41.4 34 0.00074 27.8 3.4 42 105-146 103-145 (163)
138 PRK10310 PTS system galactitol 40.9 39 0.00085 24.6 3.4 34 248-282 4-42 (94)
139 PRK06918 4-aminobutyrate amino 40.5 34 0.00073 32.6 3.8 38 249-286 117-156 (451)
140 PRK07046 aminotransferase; Val 38.8 32 0.0007 32.8 3.4 37 249-285 132-170 (453)
141 cd00133 PTS_IIB PTS_IIB: subun 38.6 39 0.00084 22.9 3.0 21 248-268 1-22 (84)
142 PLN03049 pyridoxine (pyridoxam 38.4 47 0.001 31.9 4.4 30 247-277 60-92 (462)
143 PRK08117 4-aminobutyrate amino 38.2 45 0.00097 31.5 4.2 42 245-286 101-144 (433)
144 PF02590 SPOUT_MTase: Predicte 38.1 37 0.00081 27.3 3.2 48 240-287 61-113 (155)
145 PRK10499 PTS system N,N'-diace 38.1 42 0.0009 25.1 3.2 26 247-272 4-33 (106)
146 PRK13530 arsenate reductase; P 37.9 54 0.0012 25.5 4.0 36 247-282 4-40 (133)
147 COG0162 TyrS Tyrosyl-tRNA synt 37.6 36 0.00078 32.0 3.4 39 248-287 32-80 (401)
148 PRK07481 hypothetical protein; 37.2 36 0.00078 32.4 3.4 39 248-286 105-151 (449)
149 PRK05074 inosine/xanthosine tr 37.1 42 0.00092 27.6 3.4 42 105-146 108-150 (173)
150 PRK06148 hypothetical protein; 37.0 43 0.00094 35.5 4.2 43 244-286 677-721 (1013)
151 PRK06917 hypothetical protein; 36.9 49 0.0011 31.5 4.3 43 244-286 88-138 (447)
152 PRK05769 4-aminobutyrate amino 36.4 41 0.00089 31.9 3.7 38 248-285 116-155 (441)
153 cd05567 PTS_IIB_mannitol PTS_I 36.1 44 0.00096 23.7 3.0 25 248-272 2-31 (87)
154 PRK03114 NTPase; Reviewed 36.0 45 0.00098 27.3 3.3 42 105-146 104-146 (169)
155 PRK00615 glutamate-1-semialdeh 35.9 40 0.00087 32.0 3.5 38 248-285 111-150 (433)
156 PF05225 HTH_psq: helix-turn-h 35.6 59 0.0013 20.1 3.1 26 104-129 4-30 (45)
157 TIGR00700 GABAtrnsam 4-aminobu 35.6 48 0.001 31.1 4.0 38 248-285 95-134 (420)
158 PRK07678 aminotransferase; Val 35.0 42 0.00092 31.9 3.6 38 249-286 107-152 (451)
159 PRK09792 4-aminobutyrate trans 34.8 44 0.00096 31.4 3.6 37 249-285 103-141 (421)
160 PLN02918 pyridoxine (pyridoxam 34.7 59 0.0013 31.9 4.4 30 247-277 136-168 (544)
161 PRK08593 4-aminobutyrate amino 34.6 44 0.00096 31.8 3.6 38 248-285 104-143 (445)
162 COG0394 Wzb Protein-tyrosine-p 34.6 61 0.0013 25.5 3.8 38 247-284 3-41 (139)
163 smart00404 PTPc_motif Protein 34.6 44 0.00095 23.8 2.9 17 246-262 39-56 (105)
164 smart00012 PTPc_DSPc Protein t 34.6 44 0.00095 23.8 2.9 17 246-262 39-56 (105)
165 PRK07495 4-aminobutyrate amino 34.1 45 0.00097 31.5 3.5 38 248-285 102-141 (425)
166 TIGR02691 arsC_pI258_fam arsen 33.4 52 0.0011 25.4 3.2 35 249-283 1-36 (129)
167 COG0062 Uncharacterized conser 33.0 74 0.0016 26.9 4.3 31 246-277 49-82 (203)
168 PRK05639 4-aminobutyrate amino 32.9 50 0.0011 31.5 3.7 39 248-286 114-154 (457)
169 PRK06062 hypothetical protein; 32.6 48 0.001 31.6 3.5 38 248-285 113-152 (451)
170 PRK06777 4-aminobutyrate amino 32.5 54 0.0012 30.9 3.8 37 249-285 103-141 (421)
171 TIGR02407 ectoine_ectB diamino 32.4 57 0.0012 30.6 3.9 38 248-285 100-139 (412)
172 PRK06916 adenosylmethionine--8 31.5 62 0.0013 30.9 4.0 39 248-286 117-163 (460)
173 PRK05964 adenosylmethionine--8 31.3 54 0.0012 30.8 3.6 38 248-285 103-148 (423)
174 PRK11522 putrescine--2-oxoglut 31.1 62 0.0013 30.9 4.0 43 244-286 138-185 (459)
175 cd00079 HELICc Helicase superf 30.9 78 0.0017 23.4 3.9 36 245-281 27-62 (131)
176 PF13344 Hydrolase_6: Haloacid 30.4 73 0.0016 23.4 3.5 29 244-272 28-57 (101)
177 PRK09264 diaminobutyrate--2-ox 30.2 61 0.0013 30.5 3.7 39 248-286 104-144 (425)
178 COG2519 GCD14 tRNA(1-methylade 29.8 33 0.00071 30.0 1.6 35 242-276 184-218 (256)
179 PRK08297 L-lysine aminotransfe 29.5 81 0.0018 30.0 4.5 41 245-285 108-162 (443)
180 PRK13360 omega amino acid--pyr 29.4 71 0.0015 30.3 4.1 39 247-285 106-152 (442)
181 TIGR00197 yjeF_nterm yjeF N-te 29.3 94 0.002 26.1 4.4 34 243-277 42-78 (205)
182 PRK10565 putative carbohydrate 29.2 80 0.0017 30.7 4.4 34 243-277 57-93 (508)
183 PRK12389 glutamate-1-semialdeh 28.9 59 0.0013 30.7 3.4 38 248-285 110-149 (428)
184 COG3414 SgaB Phosphotransferas 28.8 82 0.0018 23.0 3.4 26 247-272 2-32 (93)
185 PF01931 NTPase_I-T: Protein o 28.6 51 0.0011 26.9 2.5 42 105-146 105-147 (168)
186 PF02863 Arg_repressor_C: Argi 28.5 53 0.0012 22.4 2.3 30 239-268 40-69 (70)
187 PRK05965 hypothetical protein; 28.5 79 0.0017 30.2 4.2 42 244-285 104-153 (459)
188 PRK07986 adenosylmethionine--8 28.4 78 0.0017 30.0 4.1 38 248-285 104-148 (428)
189 PRK06541 hypothetical protein; 28.3 63 0.0014 30.9 3.5 39 248-286 113-159 (460)
190 PRK00103 rRNA large subunit me 28.3 92 0.002 25.1 3.9 48 240-287 61-113 (157)
191 cd05566 PTS_IIB_galactitol PTS 28.0 73 0.0016 22.4 3.0 24 248-271 2-30 (89)
192 PRK07482 hypothetical protein; 27.8 83 0.0018 30.1 4.2 40 246-285 110-157 (461)
193 COG2518 Pcm Protein-L-isoaspar 27.7 76 0.0017 26.9 3.5 23 265-287 113-136 (209)
194 PRK06058 4-aminobutyrate amino 27.6 74 0.0016 30.2 3.8 38 248-285 118-157 (443)
195 PRK07483 hypothetical protein; 26.7 92 0.002 29.6 4.3 38 248-285 91-136 (443)
196 TIGR00709 dat 2,4-diaminobutyr 26.7 80 0.0017 29.9 3.9 39 247-285 102-142 (442)
197 PRK08360 4-aminobutyrate amino 26.5 87 0.0019 29.8 4.1 38 248-285 102-141 (443)
198 cd05563 PTS_IIB_ascorbate PTS_ 26.4 83 0.0018 22.0 3.1 21 248-268 1-22 (86)
199 PRK06938 diaminobutyrate--2-ox 25.9 86 0.0019 30.0 3.9 36 250-285 129-167 (464)
200 PF00289 CPSase_L_chain: Carba 25.7 69 0.0015 24.1 2.6 29 250-278 5-33 (110)
201 PRK06943 adenosylmethionine--8 25.2 83 0.0018 30.0 3.7 38 248-285 115-160 (453)
202 PRK07030 adenosylmethionine--8 24.9 96 0.0021 29.7 4.1 38 248-285 108-153 (466)
203 PRK04612 argD acetylornithine 24.9 76 0.0017 29.8 3.3 38 248-285 99-145 (408)
204 PRK06149 hypothetical protein; 24.7 92 0.002 32.9 4.2 42 244-285 638-681 (972)
205 COG1440 CelA Phosphotransferas 24.7 93 0.002 23.2 3.0 22 247-268 2-23 (102)
206 PF04218 CENP-B_N: CENP-B N-te 24.1 86 0.0019 20.1 2.5 24 106-129 13-36 (53)
207 PRK07036 hypothetical protein; 24.1 1.1E+02 0.0023 29.4 4.2 39 247-285 112-158 (466)
208 PRK11192 ATP-dependent RNA hel 23.5 1.2E+02 0.0025 28.5 4.4 37 245-282 244-280 (434)
209 PRK11057 ATP-dependent DNA hel 23.2 1E+02 0.0022 30.7 4.0 37 245-282 235-271 (607)
210 PRK06931 diaminobutyrate--2-ox 23.1 1.1E+02 0.0023 29.3 4.0 38 248-285 122-161 (459)
211 COG5350 Predicted protein tyro 23.0 56 0.0012 26.3 1.7 25 241-265 88-113 (172)
212 PRK04537 ATP-dependent RNA hel 22.9 1E+02 0.0022 30.4 3.9 37 245-282 256-292 (572)
213 PF00899 ThiF: ThiF family; I 22.8 1.2E+02 0.0025 23.3 3.5 36 250-285 5-40 (135)
214 PRK07199 phosphoribosylpyropho 22.7 1.2E+02 0.0026 27.3 4.0 33 245-277 210-245 (301)
215 PRK04923 ribose-phosphate pyro 22.7 1.3E+02 0.0028 27.3 4.2 32 245-276 216-250 (319)
216 PF04122 CW_binding_2: Putativ 22.6 1.2E+02 0.0025 21.6 3.3 37 245-284 49-85 (92)
217 TIGR00614 recQ_fam ATP-depende 22.2 1.1E+02 0.0023 29.4 3.8 37 245-282 225-261 (470)
218 PRK06082 4-aminobutyrate amino 22.2 1.1E+02 0.0024 29.3 3.9 38 248-285 131-170 (459)
219 PF14572 Pribosyl_synth: Phosp 22.1 1.5E+02 0.0032 24.7 4.1 33 245-277 82-117 (184)
220 cd00047 PTPc Protein tyrosine 21.8 72 0.0016 27.0 2.3 18 245-262 165-183 (231)
221 PRK11776 ATP-dependent RNA hel 21.8 1.1E+02 0.0024 29.0 3.9 36 246-282 242-277 (460)
222 PRK05630 adenosylmethionine--8 21.8 1E+02 0.0022 29.1 3.5 38 248-285 101-146 (422)
223 KOG1401 Acetylornithine aminot 21.7 1.1E+02 0.0024 28.7 3.6 37 247-283 116-160 (433)
224 PRK04837 ATP-dependent RNA hel 21.7 1.2E+02 0.0027 28.3 4.1 36 246-282 255-290 (423)
225 PF13350 Y_phosphatase3: Tyros 21.5 1.1E+02 0.0023 24.5 3.2 27 246-272 124-152 (164)
226 COG3620 Predicted transcriptio 21.4 1.1E+02 0.0024 24.9 3.1 31 250-280 75-105 (187)
227 COG1165 MenD 2-succinyl-6-hydr 21.4 54 0.0012 32.0 1.6 29 245-273 69-97 (566)
228 TIGR01587 cas3_core CRISPR-ass 21.4 1.2E+02 0.0025 27.6 3.8 38 244-281 220-258 (358)
229 PRK09221 beta alanine--pyruvat 21.2 1.1E+02 0.0024 29.1 3.6 38 248-285 110-155 (445)
230 PRK06105 aminotransferase; Pro 20.9 1.4E+02 0.003 28.5 4.3 39 248-286 110-156 (460)
231 PRK08742 adenosylmethionine--8 20.9 1.2E+02 0.0026 29.1 3.9 37 249-285 131-175 (472)
232 COG4822 CbiK Cobalamin biosynt 20.6 1.6E+02 0.0035 25.2 4.0 34 244-277 135-173 (265)
233 PF01488 Shikimate_DH: Shikima 20.1 1.7E+02 0.0036 22.6 3.9 35 245-280 11-45 (135)
No 1
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.92 E-value=4e-26 Score=213.79 Aligned_cols=185 Identities=16% Similarity=0.209 Sum_probs=150.3
Q ss_pred hhhhhccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCCCC-----
Q 022540 11 PVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPG----- 84 (295)
Q Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~----- 84 (295)
..+.+.++......+.++..+..+ ..|+.+ +.||+++. +.+||.+||+..+.+.++|+.+.|.+++++++.+
T Consensus 168 ~~s~~~~~~~~~~a~~l~~~l~~g-~~F~~lA~~yS~~~~-a~~gGdlg~~~~~~l~~~~~~~~~~l~~G~is~Pi~t~~ 245 (413)
T PRK10770 168 NPTQDQVDEAESQARSIVDQARNG-ADFGKLAIAYSADQQ-ALKGGQMGWGRIQELPGLFAQALSTAKKGDIVGPIRSGV 245 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCcc-cccCCcCCccccccccHHHHHHHHhCCCCCCCCcEECCC
Confidence 344555555566666777777665 599999 99999986 7899999999999999999999999888776541
Q ss_pred ---------CC-------CccEEEeeEEeccc-------hHHHHHHHHHHhcCCC-cHHHHHHHhCCCC-CccCCCcccc
Q 022540 85 ---------GG-------DREILVQHLLVKED-------DLNLLSELQRRVSQGE-DLSDLAVEHSICP-SKGEGGMLGW 139 (295)
Q Consensus 85 ---------~~-------~~~~~~~hIl~~~~-------~~~~a~~~~~~i~~g~-~F~~~a~~~S~~~-~~~~gG~lg~ 139 (295)
.. .++++++|||+++. +++++++++++|.+|. +|+++|++||+|+ ++.+||+|||
T Consensus 246 GyhIikl~~~~~~~~~~~~~e~~~~hIli~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~~A~~~S~d~~s~~~gG~lg~ 325 (413)
T PRK10770 246 GFHILKVNDLRGESQNISVTEVHARHILLKPSPIMTDEQARAKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGW 325 (413)
T ss_pred ceEEEEEeeeccccccchHHhhhhhheEECCCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCCChHhhCCcCCc
Confidence 11 23699999999863 4567899999999996 9999999999998 8999999999
Q ss_pred ccCCCCcHHHHHHHHhCCCCccc-cccccceeEEEeeehhhhhhhcccccchhhhhhcc
Q 022540 140 VRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQ 197 (295)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~~~~~~~~~~~is~~el~~~L~ 197 (295)
+..+.++|+|..++++|++|++| |+.+++|||++++++.+..........+++++.|.
T Consensus 326 ~~~~~~~~~~~~~~~~l~~GeiS~pv~t~~g~~ii~v~~~~~~~~~~~~~r~~~~~~l~ 384 (413)
T PRK10770 326 ATPDIFDPAFRDALMRLNKGQISAPVHSSFGWHLIELLDTRQVDKTDAAQKDRAYRMLF 384 (413)
T ss_pred cCccccCHHHHHHHHcCCCCCcCCcEEcCCeEEEEEEeecccCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999876543322233334444443
No 2
>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A.
Probab=99.87 E-value=2.3e-22 Score=155.62 Aligned_cols=95 Identities=29% Similarity=0.565 Sum_probs=84.4
Q ss_pred CCCccEEEeeEEeccc---------hHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCcccccc-CCCCcHHHHHHH
Q 022540 85 GGDREILVQHLLVKED---------DLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVR-KGQLVPEFEEVA 153 (295)
Q Consensus 85 ~~~~~~~~~hIl~~~~---------~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~-~~~~~~~~~~~~ 153 (295)
..+++|+++||+|+.. ++++|++|+++|++|+||++||++||+|+ ++.+||++||+. .+.++++|.+++
T Consensus 11 ~~~~~v~~~~I~i~~~~~~~~~~~~ak~~a~~i~~~l~~G~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~ 90 (117)
T PF13616_consen 11 QAPDEVKVSHILIPVPDASSRSKEEAKKKADSILKQLKSGADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAA 90 (117)
T ss_dssp GE--EEEEEEEEESS-----------HHHHHHHHHHHHCTCCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHH
T ss_pred CCcCeEEEEEEEEeccccccchhHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHH
Confidence 4567999999999963 37789999999999999999999999998 799999999999 999999999999
Q ss_pred HhCCCCccc-cccccceeEEEeeehhh
Q 022540 154 FTTPLNKVA-RCKTKFGWHLLQVLSER 179 (295)
Q Consensus 154 ~~l~~G~vs-pv~~~~G~~ii~v~~~~ 179 (295)
|+|++|++| |+++++||||+++.+++
T Consensus 91 ~~l~~G~is~~v~s~~G~hIikv~drk 117 (117)
T PF13616_consen 91 FSLKVGEISGPVESPNGYHIIKVTDRK 117 (117)
T ss_dssp HHS-TTECTCEEEETTEEEEEEEEEE-
T ss_pred HcCCCCCCCCeEEECCEEEEEEEEeeC
Confidence 999999999 99999999999998753
No 3
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.87 E-value=1.8e-22 Score=157.64 Aligned_cols=109 Identities=28% Similarity=0.494 Sum_probs=92.9
Q ss_pred cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCcccc------ccCCCCCcEEEEeCCCh
Q 022540 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT------VKFDPQKDTYVMCHHGM 257 (295)
Q Consensus 184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~------~~~~~~~~ivv~C~~g~ 257 (295)
...++++++.+.+.+. .+..|||+|++.||..||||||+|||+..+..+...+. ..++++++|++||++|.
T Consensus 7 ~~~is~~el~~~~~~~---~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~ 83 (122)
T cd01526 7 EERVSVKDYKNILQAG---KKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAELKSLQELPLDNDKDSPIYVVCRRGN 83 (122)
T ss_pred ccccCHHHHHHHHhCC---CCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhhhhhhhhcccccCCCCcEEEECCCCC
Confidence 3457888998888652 45789999999999999999999999987765432221 12368899999999999
Q ss_pred hHHHHHHHHHHcCC-CceEEccccHhhcccccCCCCCCC
Q 022540 258 RSLQVAQWLQTQGF-RRVFNVSGGIHAYATKVDPSIPTY 295 (295)
Q Consensus 258 rs~~aa~~L~~~G~-~~v~~l~GG~~~W~~~~~p~~p~~ 295 (295)
||..++..|+..|| ++|+.++||+.+|..+.++.+|.|
T Consensus 84 rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~~~~~ 122 (122)
T cd01526 84 DSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFPLY 122 (122)
T ss_pred cHHHHHHHHHHcCCccceeeecchHHHHHHHhCccCCCC
Confidence 99999999999999 799999999999999999999987
No 4
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.86 E-value=2.4e-22 Score=151.60 Aligned_cols=96 Identities=24% Similarity=0.465 Sum_probs=80.6
Q ss_pred cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCcccc--ccCCCCCcEEEEeCCChhHHHHH
Q 022540 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT--VKFDPQKDTYVMCHHGMRSLQVA 263 (295)
Q Consensus 186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~--~~~~~~~~ivv~C~~g~rs~~aa 263 (295)
.++++++.+.+.+ ++..|||||++.||..||||||+|||+..+......+. ..++++++|||||++|.||..++
T Consensus 3 ~is~~~l~~~~~~----~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~rs~~a~ 78 (101)
T cd01518 3 YLSPAEWNELLED----PEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDLLKGKKVLMYCTGGIRCEKAS 78 (101)
T ss_pred cCCHHHHHHHHcC----CCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhhhcCCCEEEEECCCchhHHHHH
Confidence 3678888888875 46789999999999999999999999987643211111 12368899999999999999999
Q ss_pred HHHHHcCCCceEEccccHhhcc
Q 022540 264 QWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 264 ~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
.+|+..||++|++|+||+.+|.
T Consensus 79 ~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 79 AYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred HHHHHhCCcceeeechhHHHHh
Confidence 9999999999999999999996
No 5
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.86 E-value=4.3e-22 Score=152.30 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=83.1
Q ss_pred cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHH
Q 022540 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA 263 (295)
Q Consensus 184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa 263 (295)
...++++++.+.+.+. ....+||+|++.||..||||||+|+|+..+..+...+. .+++++|||||++|.||..++
T Consensus 9 ~~~i~~~~l~~~~~~~---~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~--~~~~~~ivv~C~~G~rs~~a~ 83 (109)
T cd01533 9 TPSVSADELAALQARG---APLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELA--PDPRTPIVVNCAGRTRSIIGA 83 (109)
T ss_pred CCcCCHHHHHHHHhcC---CCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcC--CCCCCeEEEECCCCchHHHHH
Confidence 3457888999888753 34689999999999999999999999987754322221 146789999999999999999
Q ss_pred HHHHHcCCCc-eEEccccHhhccccc
Q 022540 264 QWLQTQGFRR-VFNVSGGIHAYATKV 288 (295)
Q Consensus 264 ~~L~~~G~~~-v~~l~GG~~~W~~~~ 288 (295)
..|+..||++ |++|+||+.+|...|
T Consensus 84 ~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 84 QSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred HHHHHCCCCcceeEecCCHHHHHhcC
Confidence 9999999988 999999999998654
No 6
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.85 E-value=7.7e-22 Score=148.51 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=80.3
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC----ccccccCCCCCcEEEEeCCChhHHHH
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG----PDITVKFDPQKDTYVMCHHGMRSLQV 262 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~----~~~~~~~~~~~~ivv~C~~g~rs~~a 262 (295)
++++++.+++.+. ....|||||++.||..||||||+|+|+..+.... ......++++++|||||.+|.||..+
T Consensus 1 is~~el~~~l~~~---~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~a 77 (100)
T cd01523 1 LDPEDLYARLLAG---QPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQLPDDQEVTVICAKEGSSQFV 77 (100)
T ss_pred CCHHHHHHHHHcC---CCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhhCCCCCeEEEEcCCCCcHHHH
Confidence 3567888888763 3578999999999999999999999998764321 12234568899999999999999999
Q ss_pred HHHHHHcCCCceEEccccHhhcc
Q 022540 263 AQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 263 a~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
+..|++.||+ +++|.||+.+|.
T Consensus 78 a~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 78 AELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHHHHHcCce-eEEeCCcHHhhc
Confidence 9999999998 999999999996
No 7
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.84 E-value=3.8e-21 Score=144.41 Aligned_cols=96 Identities=27% Similarity=0.474 Sum_probs=84.5
Q ss_pred cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHH
Q 022540 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQW 265 (295)
Q Consensus 186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~ 265 (295)
.++++++.+.+.. +..|||+|++.+|..||||||+|+|+..+... ...++++++||+||++|.+|..++..
T Consensus 3 ~i~~~el~~~~~~-----~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~----~~~~~~~~~iv~~c~~g~~s~~~~~~ 73 (99)
T cd01527 3 TISPNDACELLAQ-----GAVLVDIREPDEYLRERIPGARLVPLSQLESE----GLPLVGANAIIFHCRSGMRTQQNAER 73 (99)
T ss_pred ccCHHHHHHHHHC-----CCEEEECCCHHHHHhCcCCCCEECChhHhccc----ccCCCCCCcEEEEeCCCchHHHHHHH
Confidence 4778899888875 26899999999999999999999999877543 12367899999999999999999999
Q ss_pred HHHcCCCceEEccccHhhcccccCC
Q 022540 266 LQTQGFRRVFNVSGGIHAYATKVDP 290 (295)
Q Consensus 266 L~~~G~~~v~~l~GG~~~W~~~~~p 290 (295)
|.+.||.+|+++.||+.+|...+.|
T Consensus 74 L~~~g~~~v~~l~gG~~~W~~~~~~ 98 (99)
T cd01527 74 LAAISAGEAYVLEGGLDAWKAAGLP 98 (99)
T ss_pred HHHcCCccEEEeeCCHHHHHHCcCC
Confidence 9999999999999999999988776
No 8
>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional
Probab=99.84 E-value=5.8e-21 Score=141.62 Aligned_cols=89 Identities=40% Similarity=0.758 Sum_probs=83.5
Q ss_pred ccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCCCccc-cccc
Q 022540 88 REILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT 166 (295)
Q Consensus 88 ~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~ 166 (295)
.++.++||++..++. |++++++|++|++|+++|++||+|+++..||+|||+..++++++|.++++.|++|++| |+++
T Consensus 3 ~~~~~~~I~~~~~~~--A~~i~~~l~~g~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~f~~a~~~l~~G~vs~Pi~t 80 (93)
T PRK15441 3 KTAAALHILVKEEKL--ALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHT 80 (93)
T ss_pred CceEEEEEEECCHHH--HHHHHHHHHCCCCHHHHHHHhCCCchhhcCccceeecccccCHHHHHHHHhCCCCCcCCcEEc
Confidence 468999999987766 9999999999999999999999999777899999999999999999999999999999 9999
Q ss_pred cceeEEEeeehh
Q 022540 167 KFGWHLLQVLSE 178 (295)
Q Consensus 167 ~~G~~ii~v~~~ 178 (295)
++|||+++++++
T Consensus 81 ~~G~hIlkv~~r 92 (93)
T PRK15441 81 QFGYHIIKVLYR 92 (93)
T ss_pred CCEEEEEEEEec
Confidence 999999999864
No 9
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.84 E-value=3e-21 Score=147.38 Aligned_cols=101 Identities=31% Similarity=0.557 Sum_probs=88.4
Q ss_pred cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHH
Q 022540 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA 263 (295)
Q Consensus 184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa 263 (295)
+..++++++.+.+.+ ....+||+|++.+|..||||||+|+|+..|..+ +..++++++|+|||.+|.+|..++
T Consensus 4 ~~~is~~el~~~l~~----~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~----~~~~~~~~~ivv~c~~g~~s~~a~ 75 (108)
T PRK00162 4 FECINVEQAHQKLQE----GGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAF----MRQADFDTPVMVMCYHGNSSQGAA 75 (108)
T ss_pred ccccCHHHHHHHHHc----CCCEEEEcCCHHHHhcCCCCCCeECCHHHHHHH----HHhcCCCCCEEEEeCCCCCHHHHH
Confidence 456888999998865 356899999999999999999999999877543 334678999999999999999999
Q ss_pred HHHHHcCCCceEEccccHhhcccccCCCC
Q 022540 264 QWLQTQGFRRVFNVSGGIHAYATKVDPSI 292 (295)
Q Consensus 264 ~~L~~~G~~~v~~l~GG~~~W~~~~~p~~ 292 (295)
..|+..||++|++++||+.+|...+.|..
T Consensus 76 ~~L~~~G~~~v~~l~GG~~~w~~~~~~~~ 104 (108)
T PRK00162 76 QYLLQQGFDVVYSIDGGFEAWRRTFPAEV 104 (108)
T ss_pred HHHHHCCchheEEecCCHHHHHhcCCCcc
Confidence 99999999999999999999999888754
No 10
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=99.83 E-value=2.9e-21 Score=169.28 Aligned_cols=126 Identities=25% Similarity=0.450 Sum_probs=99.1
Q ss_pred ccChHhhh-ccccCCCCCCCCCCCccEEEeeEEeccc------hHHHHHHHHHHhcCC-CcHHHHHHHhCCCCCccCCCc
Q 022540 65 SFTSPKAA-SFSSGTEGSSPGGGDREILVQHLLVKED------DLNLLSELQRRVSQG-EDLSDLAVEHSICPSKGEGGM 136 (295)
Q Consensus 65 ~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~hIl~~~~------~~~~a~~~~~~i~~g-~~F~~~a~~~S~~~~~~~gG~ 136 (295)
.|++.|.. +|..+.. .+..++.++++|||++.+ ++++|++++++|++| .+|+++|++||+|+++.+||+
T Consensus 101 ~ise~ei~~yy~~~~~---~~~~~e~~~~~hIli~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~sa~~GGd 177 (256)
T TIGR02933 101 QPDDADVEAWYRRHAE---QFKRPEQRLTRHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGL 177 (256)
T ss_pred CCCHHHHHHHHHHHHH---hcCCCCeEEEEEEEEECCcccHHHHHHHHHHHHHHHHhCcccHHHHHHHhCCCCccccCCc
Confidence 44555553 3333332 234567788999999853 245678899999987 599999999999998899999
Q ss_pred cccccCCCCcHHHHHHHHhCCCCccc-cccccceeEEEeeehhhhhhhcccccchhhhhhc
Q 022540 137 LGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREASLLQDIQPDELHKKM 196 (295)
Q Consensus 137 lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~~~~~~~~~~~is~~el~~~L 196 (295)
|||+..+.++|.|.+++++|++|++| ||.+++||||+++.+.++... .+.++++..+
T Consensus 178 lG~~~~~~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlkl~~~~~~~~---~~~eevk~~I 235 (256)
T TIGR02933 178 LGWVSRGLLYPQLDAALFQLAEGELSPPIESEIGWHLLLCEAIRPARP---LTLEEALPRA 235 (256)
T ss_pred cCCcCCCccChHHHHHHHcCCCCCcCCceeeCCeEEEEEEeeecCCCC---CCHHHHHHHH
Confidence 99999999999999999999999999 999999999999998776432 3444444444
No 11
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.83 E-value=5.7e-21 Score=142.43 Aligned_cols=94 Identities=27% Similarity=0.395 Sum_probs=76.9
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHH
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 266 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L 266 (295)
++++++.+++.+.. ....+||||++.||..||||||+|+|+..+......+.. .++++||+||.+|.||..++.+|
T Consensus 1 is~~~l~~~~~~~~--~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~~~~~--~~~~~iv~~c~~G~rs~~aa~~L 76 (95)
T cd01534 1 IGAAELARWAAEGD--RTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAP--VRGARIVLADDDGVRADMTASWL 76 (95)
T ss_pred CCHHHHHHHHHcCC--CCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHHHhcc--cCCCeEEEECCCCChHHHHHHHH
Confidence 35678888886531 246799999999999999999999999876543222211 25789999999999999999999
Q ss_pred HHcCCCceEEccccHhhcc
Q 022540 267 QTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 267 ~~~G~~~v~~l~GG~~~W~ 285 (295)
...||+ |++++||+.+|.
T Consensus 77 ~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 77 AQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred HHcCCE-EEEecCcHHHhc
Confidence 999998 999999999996
No 12
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.82 E-value=1.2e-20 Score=142.26 Aligned_cols=99 Identities=46% Similarity=0.813 Sum_probs=81.7
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHH
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 266 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L 266 (295)
++++++.+.+.... ...++||+|++.||..+|||||+|+|+..+..+...+.. .+++++||+||++|.||..++..|
T Consensus 2 i~~~~l~~~~~~~~--~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~~~~~~-~~~~~~vv~~c~~g~rs~~~~~~l 78 (101)
T cd01528 2 ISVAELAEWLADER--EEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELDS-DNPDKDIVVLCHHGGRSMQVAQWL 78 (101)
T ss_pred CCHHHHHHHHhcCC--CCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHHHHhcc-cCCCCeEEEEeCCCchHHHHHHHH
Confidence 56778888887521 246899999999999999999999999877554222211 146899999999999999999999
Q ss_pred HHcCCCceEEccccHhhccccc
Q 022540 267 QTQGFRRVFNVSGGIHAYATKV 288 (295)
Q Consensus 267 ~~~G~~~v~~l~GG~~~W~~~~ 288 (295)
.+.||++|++++||+.+|....
T Consensus 79 ~~~G~~~v~~l~GG~~~w~~~~ 100 (101)
T cd01528 79 LRQGFENVYNLQGGIDAWSLEV 100 (101)
T ss_pred HHcCCccEEEecCCHHHHhhhc
Confidence 9999999999999999997653
No 13
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.3e-20 Score=142.94 Aligned_cols=104 Identities=26% Similarity=0.438 Sum_probs=85.4
Q ss_pred cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCC----CccccccC-----CCCCcEEEEeC
Q 022540 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW----GPDITVKF-----DPQKDTYVMCH 254 (295)
Q Consensus 184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~----~~~~~~~~-----~~~~~ivv~C~ 254 (295)
...++.++++.++.. .+..+||||+++||..||+|.+||||+...... .++++..+ +.|+.|||+|.
T Consensus 22 ~~sv~~~qvk~L~~~----~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~ 97 (136)
T KOG1530|consen 22 PQSVSVEQVKNLLQH----PDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCA 97 (136)
T ss_pred cEEEEHHHHHHHhcC----CCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEec
Confidence 344778889999887 458999999999999999999999999533221 12222221 35679999999
Q ss_pred CChhHHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540 255 HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 255 ~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
+|.||..|...|..+||+||.++.|||.+|...+.|.
T Consensus 98 SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~ 134 (136)
T KOG1530|consen 98 SGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPK 134 (136)
T ss_pred cCcchhHHHHHHHHcCcccccccCccHHHHHHccCCC
Confidence 9999999999999999999999999999999988775
No 14
>PLN02160 thiosulfate sulfurtransferase
Probab=99.82 E-value=3.1e-20 Score=147.36 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=84.5
Q ss_pred cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCc--cccCccccCCC--C------ccccccCCCCCcEEEEe
Q 022540 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGF--QVLPLRQFGSW--G------PDITVKFDPQKDTYVMC 253 (295)
Q Consensus 184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgA--inip~~~l~~~--~------~~~~~~~~~~~~ivv~C 253 (295)
...++++++.+++++ +..|||||++.||..|||||| +|+|+..+... . ..+...++++++||+||
T Consensus 14 ~~~i~~~e~~~~~~~-----~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC 88 (136)
T PLN02160 14 VVSVDVSQAKTLLQS-----GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGC 88 (136)
T ss_pred eeEeCHHHHHHHHhC-----CCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEEC
Confidence 445778888888865 347999999999999999999 89997433110 0 01112247889999999
Q ss_pred CCChhHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540 254 HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 292 (295)
Q Consensus 254 ~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~ 292 (295)
++|.||..++..|...||++|+++.||+.+|...+.|..
T Consensus 89 ~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~ 127 (136)
T PLN02160 89 QSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPIN 127 (136)
T ss_pred CCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999864
No 15
>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional
Probab=99.82 E-value=6.9e-20 Score=141.16 Aligned_cols=91 Identities=27% Similarity=0.529 Sum_probs=83.3
Q ss_pred CCccEEEeeEEeccch--------------------HHHHHHHHHHhcCCC-cHHHHHHHhCCCCCccCCCccccccCCC
Q 022540 86 GDREILVQHLLVKEDD--------------------LNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGWVRKGQ 144 (295)
Q Consensus 86 ~~~~~~~~hIl~~~~~--------------------~~~a~~~~~~i~~g~-~F~~~a~~~S~~~~~~~gG~lg~~~~~~ 144 (295)
.+++|+++|||+.... ++++++|+++|++|. +|+++|++||+++++.+||++||+..+.
T Consensus 2 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~~~~~~gG~lG~~~~~~ 81 (115)
T PTZ00356 2 EGDTVRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELAKWREQIVSGEKTFEEIARQRSDCGSAAKGGDLGFFGRGQ 81 (115)
T ss_pred CCcEEEEEEEEEecCCCcCcccccccccccccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCCchhhcCccceeEcccc
Confidence 4689999999999532 457899999999996 9999999999988888999999999999
Q ss_pred CcHHHHHHHHhCCCCccc-cccccceeEEEeee
Q 022540 145 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL 176 (295)
Q Consensus 145 ~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~ 176 (295)
++++|.+++++|++|++| |+++++|||++++.
T Consensus 82 L~~~~~~a~~~L~~Geis~Pi~t~~G~hIlk~~ 114 (115)
T PTZ00356 82 MQKPFEDAAFALKVGEISDIVHTDSGVHIILRL 114 (115)
T ss_pred cCHHHHHHHHcCCCCCCCCcEEECCEEEEEEEc
Confidence 999999999999999999 99999999999875
No 16
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.81 E-value=5.2e-20 Score=139.65 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=77.3
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCC--------CCCcEEEEeCCChh
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD--------PQKDTYVMCHHGMR 258 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~--------~~~~ivv~C~~g~r 258 (295)
++++++++.+.+.. ....|||+|++.||..||||||+|+|+..+...... ...++ .+++|||||.+|.+
T Consensus 1 is~~~l~~~l~~~~--~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~-~~~~~~~~~~~~~~~~~vv~~c~~g~~ 77 (105)
T cd01525 1 ISVYDVIRLLDNSP--AKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGE-LEQLPTVPRLENYKGKIIVIVSHSHKH 77 (105)
T ss_pred CCHHHHHHHHhCCC--CCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccc-cccccchHHHHhhcCCeEEEEeCCCcc
Confidence 45678888887521 357899999999999999999999999765321111 11122 47899999999999
Q ss_pred HHHHHHHHHHcCCCceEEccccHhhcc
Q 022540 259 SLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 259 s~~aa~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
|..++..|+..||++|++|+||+.+|+
T Consensus 78 s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 78 AALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 999999999999999999999999995
No 17
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=99.81 E-value=1.3e-19 Score=135.14 Aligned_cols=84 Identities=37% Similarity=0.620 Sum_probs=77.5
Q ss_pred eEEeccc--------hHHHHHHHHHHhcCCCc-HHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHhCCCCccc-
Q 022540 94 HLLVKED--------DLNLLSELQRRVSQGED-LSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA- 162 (295)
Q Consensus 94 hIl~~~~--------~~~~a~~~~~~i~~g~~-F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs- 162 (295)
|||++.+ .+++|++++++|++|++ |+++|++||++. ++.+||++||+..++++++|.+++++|++|++|
T Consensus 1 HIl~~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs~ 80 (95)
T PF00639_consen 1 HILVKPPPSDEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALFALKPGEVSK 80 (95)
T ss_dssp EEEEESTTSCCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHHTSTTTSBEE
T ss_pred CEEEECCCchhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHHhCCCCCcCC
Confidence 9999964 26789999999999985 999999999665 999999999999999999999999999999999
Q ss_pred cccccceeEEEeeeh
Q 022540 163 RCKTKFGWHLLQVLS 177 (295)
Q Consensus 163 pv~~~~G~~ii~v~~ 177 (295)
|+.+++||||+++.+
T Consensus 81 pi~t~~G~~Ii~v~d 95 (95)
T PF00639_consen 81 PIETDNGYHIIKVED 95 (95)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred CEEECCEEEEEEEEC
Confidence 999999999998863
No 18
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.81 E-value=4.4e-20 Score=137.65 Aligned_cols=92 Identities=33% Similarity=0.538 Sum_probs=80.2
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHHhh--cCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHH
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL--SSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 264 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~--ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~ 264 (295)
++++++.+.+.+. .+..+||+|++.+|.. ||||||+|+|+..+..+ ...++++++|||||.+|.+|..++.
T Consensus 2 i~~~~~~~~~~~~---~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~----~~~~~~~~~ivv~c~~g~~s~~a~~ 74 (96)
T cd01444 2 ISVDELAELLAAG---EAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDW----LGDLDRDRPVVVYCYHGNSSAQLAQ 74 (96)
T ss_pred cCHHHHHHHHhcC---CCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHH----HhhcCCCCCEEEEeCCCChHHHHHH
Confidence 4567787777652 3578999999999999 99999999999877543 3446889999999999999999999
Q ss_pred HHHHcCCCceEEccccHhhcc
Q 022540 265 WLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 265 ~L~~~G~~~v~~l~GG~~~W~ 285 (295)
.|+..||++|++++||+.+|.
T Consensus 75 ~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 75 ALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HHHHcCCceEEEcCCCHHHhc
Confidence 999999999999999999995
No 19
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.80 E-value=6.7e-20 Score=138.40 Aligned_cols=97 Identities=25% Similarity=0.480 Sum_probs=78.9
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHH-hhcCCCCccccCccccCCCCcc----ccccCCCCCcEEEEeCCChhHHH
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEV-ALSSLPGFQVLPLRQFGSWGPD----ITVKFDPQKDTYVMCHHGMRSLQ 261 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~-~~ghIpgAinip~~~l~~~~~~----~~~~~~~~~~ivv~C~~g~rs~~ 261 (295)
++++++.+.+.+ .+.+|||+|++.+| ..||||||+|+|+..+..+... ....++++++|||||.+|.+|..
T Consensus 1 is~~el~~~~~~----~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~ 76 (103)
T cd01447 1 LSPEDARALLGS----PGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFAEDKPFVFYCASGWRSAL 76 (103)
T ss_pred CCHHHHHHHHhC----CCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccccccccCCCCCCeEEEEcCCCCcHHH
Confidence 356778877765 45789999999998 5799999999998766432211 11235789999999999999999
Q ss_pred HHHHHHHcCCCceEEccccHhhcccc
Q 022540 262 VAQWLQTQGFRRVFNVSGGIHAYATK 287 (295)
Q Consensus 262 aa~~L~~~G~~~v~~l~GG~~~W~~~ 287 (295)
++..|+..||++|++++||+.+|...
T Consensus 77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~ 102 (103)
T cd01447 77 AGKTLQDMGLKPVYNIEGGFKDWKEA 102 (103)
T ss_pred HHHHHHHcChHHhEeecCcHHHHhhc
Confidence 99999999999999999999999754
No 20
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.80 E-value=6.1e-20 Score=135.48 Aligned_cols=88 Identities=31% Similarity=0.505 Sum_probs=76.9
Q ss_pred cchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHH
Q 022540 188 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQ 267 (295)
Q Consensus 188 s~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~ 267 (295)
+++++.+++. ++.++||+|++.+|..||||||+|+|+..+..+ ...++++++||+||.+|.++..++..|+
T Consensus 2 ~~~e~~~~~~-----~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~----~~~~~~~~~vvl~c~~g~~a~~~a~~L~ 72 (90)
T cd01524 2 QWHELDNYRA-----DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR----LNELPKDKEIIVYCAVGLRGYIAARILT 72 (90)
T ss_pred CHHHHHHHhc-----CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH----HHhcCCCCcEEEEcCCChhHHHHHHHHH
Confidence 4677888774 456899999999999999999999999877543 3346788999999999999999999999
Q ss_pred HcCCCceEEccccHhhcc
Q 022540 268 TQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 268 ~~G~~~v~~l~GG~~~W~ 285 (295)
..|| +|++|+||+.+|.
T Consensus 73 ~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 73 QNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HCCC-CEEEecCCHHHhc
Confidence 9999 8999999999996
No 21
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.80 E-value=8.4e-20 Score=138.71 Aligned_cols=94 Identities=28% Similarity=0.412 Sum_probs=76.9
Q ss_pred cchhhhhhcc-CCCccccceeecCcchhHHhhcCCCCccccCccccCCCCc----cccc-----cCCCCCcEEEEeCCCh
Q 022540 188 QPDELHKKMQ-DPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP----DITV-----KFDPQKDTYVMCHHGM 257 (295)
Q Consensus 188 s~~el~~~L~-~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~----~~~~-----~~~~~~~ivv~C~~g~ 257 (295)
+++++.++++ . ....|||+|++.||..||||||+|+|+..+..... .+.. ..+++++||+||++|.
T Consensus 2 ~~~~~~~~l~~~----~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 77 (106)
T cd01519 2 SFEEVKNLPNPH----PNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGV 77 (106)
T ss_pred cHHHHHHhcCCC----CCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcH
Confidence 4567777776 4 46789999999999999999999999977643210 1111 1356899999999999
Q ss_pred hHHHHHHHHHHcCCCceEEccccHhhcc
Q 022540 258 RSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 258 rs~~aa~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
+|..++..|..+||++|++++||+.+|.
T Consensus 78 ~s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 78 RSKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred HHHHHHHHHHHcCCccceecCCcHHHHc
Confidence 9999999999999999999999999996
No 22
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.80 E-value=1.1e-19 Score=135.81 Aligned_cols=83 Identities=23% Similarity=0.276 Sum_probs=70.5
Q ss_pred ccceeecCcchhHHhhcCCCCccccCccccCCCCccc--cccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEcccc
Q 022540 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG 280 (295)
Q Consensus 203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~--~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG 280 (295)
+...|||+|++.+|..||||||+|+|+..+......+ +...+++++||+||++|.+|..++.+|+..||++|++|+||
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG 90 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGG 90 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCCHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCC
Confidence 4678999999999999999999999987664332221 12246889999999999999999999999999999999999
Q ss_pred Hhhcc
Q 022540 281 IHAYA 285 (295)
Q Consensus 281 ~~~W~ 285 (295)
+.+|.
T Consensus 91 ~~~W~ 95 (96)
T cd01529 91 TSAWV 95 (96)
T ss_pred HHHhc
Confidence 99996
No 23
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.79 E-value=1.4e-19 Score=138.58 Aligned_cols=102 Identities=24% Similarity=0.278 Sum_probs=85.1
Q ss_pred cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCCh--hHHH
Q 022540 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGM--RSLQ 261 (295)
Q Consensus 184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~--rs~~ 261 (295)
...++++++.+.+.+.. +..+|||+|++.+|..||||||+|+|+..+..+ ....++++++|||||++|. +|..
T Consensus 7 ~~~~s~~el~~~l~~~~--~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~---~~~~i~~~~~vvvyc~~g~~~~s~~ 81 (110)
T cd01521 7 AFETDCWDVAIALKNGK--PDFVLVDVRSAEAYARGHVPGAINLPHREICEN---ATAKLDKEKLFVVYCDGPGCNGATK 81 (110)
T ss_pred eeecCHHHHHHHHHcCC--CCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH---hhhcCCCCCeEEEEECCCCCchHHH
Confidence 34588899999887521 247899999999999999999999999876522 2234688999999999874 8999
Q ss_pred HHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540 262 VAQWLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 262 aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
++..|+..||+ +++++||+.+|...+.|.
T Consensus 82 ~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 82 AALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred HHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 99999999995 999999999999888763
No 24
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.78 E-value=4.4e-19 Score=154.92 Aligned_cols=104 Identities=19% Similarity=0.354 Sum_probs=83.4
Q ss_pred ccccchhhhhhccCCCc--cccceeecCcchhHHhhcCCCCccccCccccCCCCccccccC--CCCCcEEEEeCCChhHH
Q 022540 185 QDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCHHGMRSL 260 (295)
Q Consensus 185 ~~is~~el~~~L~~~~~--~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~--~~~~~ivv~C~~g~rs~ 260 (295)
..++++++.+++++... .+..++||||++.||+.||||||+|||+..|.++..++.... .++++|++||++|.||.
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G~Rs~ 189 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRADLAGKTVVSFCTGGIRCE 189 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHHhhhhhcCCCeEEEECCCCHHHH
Confidence 34777888887765210 024689999999999999999999999988765432221111 27899999999999999
Q ss_pred HHHHHHHHcCCCceEEccccHhhccccc
Q 022540 261 QVAQWLQTQGFRRVFNVSGGIHAYATKV 288 (295)
Q Consensus 261 ~aa~~L~~~G~~~v~~l~GG~~~W~~~~ 288 (295)
.++..|++.||++|++|.||+.+|.++.
T Consensus 190 ~Aa~~L~~~Gf~~V~~L~GGi~~w~~~~ 217 (257)
T PRK05320 190 KAAIHMQEVGIDNVYQLEGGILKYFEEV 217 (257)
T ss_pred HHHHHHHHcCCcceEEeccCHHHHHHhC
Confidence 9999999999999999999999998764
No 25
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.78 E-value=1.6e-19 Score=140.55 Aligned_cols=100 Identities=19% Similarity=0.315 Sum_probs=79.1
Q ss_pred cccchhhhhhccCCC--ccccceeecCcchhHHhhcCCCCccccCcc-ccCCCCccc--cccCCCCCcEEEEeC-CChhH
Q 022540 186 DIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLR-QFGSWGPDI--TVKFDPQKDTYVMCH-HGMRS 259 (295)
Q Consensus 186 ~is~~el~~~L~~~~--~~~~~~iiDvR~~~e~~~ghIpgAinip~~-~l~~~~~~~--~~~~~~~~~ivv~C~-~g~rs 259 (295)
.++++++.+++.+.. ....+.+||||++.||..||||||+|||+. .+....... ...++++++|||||+ +|.||
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~~~~~~~~~~~~~~vv~yC~~sg~rs 82 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGVASKKKRRVLIFHCEFSSKRG 82 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHHHhhcccccCCCCEEEEECCCccccH
Confidence 477888988886520 013578999999999999999999999996 453321110 012578999999997 99999
Q ss_pred HHHHHHHHHc------------CCCceEEccccHhhcc
Q 022540 260 LQVAQWLQTQ------------GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 260 ~~aa~~L~~~------------G~~~v~~l~GG~~~W~ 285 (295)
..++..|+.. ||++|++|+||+.+|.
T Consensus 83 ~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 83 PRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred HHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 9999999985 9999999999999984
No 26
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.78 E-value=1.8e-19 Score=139.51 Aligned_cols=98 Identities=22% Similarity=0.392 Sum_probs=80.7
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHHh-hcCCCCccccCccccCCCC------ccccccCCCCCcEEEEeCCChhH
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVA-LSSLPGFQVLPLRQFGSWG------PDITVKFDPQKDTYVMCHHGMRS 259 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~-~ghIpgAinip~~~l~~~~------~~~~~~~~~~~~ivv~C~~g~rs 259 (295)
++++++.+++++. ++..+||||++.||. .||||||+|+|+..+.... ..+...++++++||+||++|.+|
T Consensus 1 is~~el~~~l~~~---~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs 77 (117)
T cd01522 1 LTPAEAWALLQAD---PQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGNRS 77 (117)
T ss_pred CCHHHHHHHHHhC---CCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCCccH
Confidence 3567888888763 367899999999999 9999999999998765321 11112236889999999999999
Q ss_pred HHHHHHHHHcCCCceEEccccHhhcccc
Q 022540 260 LQVAQWLQTQGFRRVFNVSGGIHAYATK 287 (295)
Q Consensus 260 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 287 (295)
..++..|+..||++++++.||+.+|...
T Consensus 78 ~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 78 IAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 9999999999999999999999999643
No 27
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.78 E-value=4.5e-19 Score=132.17 Aligned_cols=88 Identities=30% Similarity=0.537 Sum_probs=75.5
Q ss_pred ccceeecCcchhHHhhcCCCCccccCccccCCCCccc----------cccCCCCCcEEEEeCCChhHHHHHHHHHHcCCC
Q 022540 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI----------TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFR 272 (295)
Q Consensus 203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~----------~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 272 (295)
++..|||+|++.+|..||||||+|+|+..+....... ....+++++|||||.+|.++..++..|+..||+
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 4678999999999999999999999998765542211 233578899999999999999999999999999
Q ss_pred ceEEccccHhhcccccCC
Q 022540 273 RVFNVSGGIHAYATKVDP 290 (295)
Q Consensus 273 ~v~~l~GG~~~W~~~~~p 290 (295)
+|++|+||+.+|...+.|
T Consensus 83 ~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 83 NVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred ceEEecCCHHHHHhcCCC
Confidence 999999999999987754
No 28
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8.5e-19 Score=134.41 Aligned_cols=92 Identities=32% Similarity=0.548 Sum_probs=83.6
Q ss_pred CCCccEEEeeEEeccc-------------------hHHHHHHHHHHhcCCC-cHHHHHHHhCCCCCccCCCccccccCCC
Q 022540 85 GGDREILVQHLLVKED-------------------DLNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGWVRKGQ 144 (295)
Q Consensus 85 ~~~~~~~~~hIl~~~~-------------------~~~~a~~~~~~i~~g~-~F~~~a~~~S~~~~~~~gG~lg~~~~~~ 144 (295)
..+++|+.+||||+-+ +...++.+.+.|.+|+ +|++||+++|++.++..||+||||.+++
T Consensus 50 ~~p~~Vr~sHlLVKH~~SRrpsSwr~~~it~skeeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrgq 129 (163)
T KOG3259|consen 50 GEPARVRCSHLLVKHKGSRRPSSWRSENITRSKEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRGQ 129 (163)
T ss_pred CCccceeEEEEEEccccCCCCcccccccchhhHHHHHHHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCccccccccc
Confidence 5678999999999942 3456778888899997 9999999999999999999999999999
Q ss_pred CcHHHHHHHHhCCCCccc-cccccceeEEEeee
Q 022540 145 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL 176 (295)
Q Consensus 145 ~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~ 176 (295)
|-++|++++|+|++|++| ||.|+.|+|||+..
T Consensus 130 Mqk~FEdaafaL~~ge~SgiV~t~SG~HiI~R~ 162 (163)
T KOG3259|consen 130 MQKPFEDAAFALKVGEMSGIVDTDSGVHIIYRT 162 (163)
T ss_pred ccccchhhhhhcccccccCceecCCceEEEEec
Confidence 999999999999999999 99999999999753
No 29
>PRK01415 hypothetical protein; Validated
Probab=99.78 E-value=2.3e-19 Score=154.51 Aligned_cols=101 Identities=19% Similarity=0.382 Sum_probs=85.6
Q ss_pred ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccc--cccCCCCCcEEEEeCCChhHHHH
Q 022540 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVKFDPQKDTYVMCHHGMRSLQV 262 (295)
Q Consensus 185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~--~~~~~~~~~ivv~C~~g~rs~~a 262 (295)
..++++++.+++++ +++++||||++.||..||||||+|+|+..+.+...+. ...++++++|++||.+|.||..+
T Consensus 112 ~~i~p~e~~~ll~~----~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGiRs~kA 187 (247)
T PRK01415 112 EYIEPKDWDEFITK----QDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGIRCEKS 187 (247)
T ss_pred cccCHHHHHHHHhC----CCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCChHHHHH
Confidence 45888999999986 5788999999999999999999999987664321111 13357899999999999999999
Q ss_pred HHHHHHcCCCceEEccccHhhcccccC
Q 022540 263 AQWLQTQGFRRVFNVSGGIHAYATKVD 289 (295)
Q Consensus 263 a~~L~~~G~~~v~~l~GG~~~W~~~~~ 289 (295)
+..|++.||++|++|.||+.+|.+...
T Consensus 188 a~~L~~~Gf~~Vy~L~GGi~~w~~~~~ 214 (247)
T PRK01415 188 TSLLKSIGYDEVYHLKGGILQYLEDTQ 214 (247)
T ss_pred HHHHHHcCCCcEEEechHHHHHHHhcc
Confidence 999999999999999999999987654
No 30
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.78 E-value=3.8e-19 Score=145.19 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=82.5
Q ss_pred hhcccccchhhhhhccCCCccccceeecCcchh----HHhhc---------CCCCccccCccccCCCCcc----c---cc
Q 022540 182 SLLQDIQPDELHKKMQDPNFHKEAQLIDVREPE----EVALS---------SLPGFQVLPLRQFGSWGPD----I---TV 241 (295)
Q Consensus 182 ~~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~----e~~~g---------hIpgAinip~~~l~~~~~~----~---~~ 241 (295)
.....++++++.+++.+ ....|||||++. +|..| |||||+|+|+..+...... + +.
T Consensus 33 ~~~~~vs~~el~~~l~~----~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~ 108 (162)
T TIGR03865 33 KGARVLDTEAAQALLAR----GPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLE 108 (162)
T ss_pred CCccccCHHHHHHHHhC----CCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHH
Confidence 44567889999999976 457899999865 45444 9999999996433221110 1 11
Q ss_pred ---cCCCCCcEEEEeCCCh-hHHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540 242 ---KFDPQKDTYVMCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 242 ---~~~~~~~ivv~C~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
..+++++||+||++|. +|..++..|+.+||++|++|+||+.+|...+.|.
T Consensus 109 ~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 109 RATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 1258899999999986 8999999999999999999999999999999874
No 31
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.77 E-value=2.5e-19 Score=140.98 Aligned_cols=94 Identities=31% Similarity=0.469 Sum_probs=75.4
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC--------------------------cccc
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG--------------------------PDIT 240 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~--------------------------~~~~ 240 (295)
++++++.+.+.+ +..|||||++.||..||||||+|||+..+.... ..+.
T Consensus 1 ~s~~el~~~l~~-----~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (128)
T cd01520 1 ITAEDLLALRKA-----DGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRIL 75 (128)
T ss_pred CCHHHHHHHHhc-----CCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHH
Confidence 456788887763 468999999999999999999999996432110 0010
Q ss_pred -----ccCCCCCcEEEEeC-CChhHHHHHHHHHHcCCCceEEccccHhhccc
Q 022540 241 -----VKFDPQKDTYVMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 241 -----~~~~~~~~ivv~C~-~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~ 286 (295)
..++++++|||||. +|.||..++..|+.+|| +|++|+||+.+|..
T Consensus 76 ~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 76 NEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 24688999999997 68999999999999999 69999999999964
No 32
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=99.77 E-value=4.8e-19 Score=157.57 Aligned_cols=90 Identities=28% Similarity=0.608 Sum_probs=84.6
Q ss_pred cEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHhCCCCccc-cccc
Q 022540 89 EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT 166 (295)
Q Consensus 89 ~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~ 166 (295)
+++++||+++.++. |+.++++|++|++|+++|++||.|+ ++.+||++||+..+.++|+|.+++++|++|++| ||++
T Consensus 136 ~~~~~~Ilv~~~~~--A~~i~~~l~~G~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~L~~GevS~pI~t 213 (285)
T PRK03002 136 EIKASHILVSDENE--AKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQISNPVKS 213 (285)
T ss_pred ceEEEEEEECCHHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHcCCCCCcCCcEEE
Confidence 58999999998755 8999999999999999999999998 788999999999999999999999999999999 9999
Q ss_pred cceeEEEeeehhhh
Q 022540 167 KFGWHLLQVLSERE 180 (295)
Q Consensus 167 ~~G~~ii~v~~~~~ 180 (295)
++|||++++.+++.
T Consensus 214 ~~G~hIikv~~~~~ 227 (285)
T PRK03002 214 PNGYHIIKLTDKKD 227 (285)
T ss_pred CCEEEEEEEeecCC
Confidence 99999999998764
No 33
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.1e-18 Score=133.10 Aligned_cols=91 Identities=33% Similarity=0.546 Sum_probs=80.7
Q ss_pred ccceeecCcchhHHhhcCCCC-ccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccH
Q 022540 203 KEAQLIDVREPEEVALSSLPG-FQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 281 (295)
Q Consensus 203 ~~~~iiDvR~~~e~~~ghIpg-Ainip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 281 (295)
+...++|||++.||..+|||| ++|+|+..+........ ++++++++|||.+|.||..++..|+..||++++++.||+
T Consensus 19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~--~~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~ 96 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE--LPDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGI 96 (110)
T ss_pred CCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc--cCCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcH
Confidence 467999999999999999999 99999998866432222 578999999999999999999999999999888999999
Q ss_pred hhcccccCCCCCCC
Q 022540 282 HAYATKVDPSIPTY 295 (295)
Q Consensus 282 ~~W~~~~~p~~p~~ 295 (295)
.+|...+.|..+.+
T Consensus 97 ~~w~~~~~~~~~~~ 110 (110)
T COG0607 97 DAWKGAGLPLVRGY 110 (110)
T ss_pred HHHHhcCCCcccCC
Confidence 99999999987653
No 34
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.76 E-value=8.3e-19 Score=162.66 Aligned_cols=106 Identities=34% Similarity=0.607 Sum_probs=92.7
Q ss_pred ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHH
Q 022540 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 264 (295)
Q Consensus 185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~ 264 (295)
..++++++.+++++. ....+||+|++.||..||||||+|+|+..+... .....++++++|||||++|.||..++.
T Consensus 287 ~~Is~~el~~~l~~~---~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~--~~~~~l~~d~~iVvyC~~G~rS~~aa~ 361 (392)
T PRK07878 287 STITPRELKEWLDSG---KKIALIDVREPVEWDIVHIPGAQLIPKSEILSG--EALAKLPQDRTIVLYCKTGVRSAEALA 361 (392)
T ss_pred CccCHHHHHHHHhCC---CCeEEEECCCHHHHhcCCCCCCEEcChHHhcch--hHHhhCCCCCcEEEEcCCChHHHHHHH
Confidence 457788888888753 356899999999999999999999999876431 123456889999999999999999999
Q ss_pred HHHHcCCCceEEccccHhhcccccCCCCCCC
Q 022540 265 WLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295 (295)
Q Consensus 265 ~L~~~G~~~v~~l~GG~~~W~~~~~p~~p~~ 295 (295)
.|++.||++|++++||+.+|...++|.+|.|
T Consensus 362 ~L~~~G~~~V~~L~GG~~~W~~~~~~~~p~~ 392 (392)
T PRK07878 362 ALKKAGFSDAVHLQGGVVAWAKQVDPSLPMY 392 (392)
T ss_pred HHHHcCCCcEEEecCcHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999998
No 35
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=99.76 E-value=7.3e-19 Score=156.27 Aligned_cols=90 Identities=37% Similarity=0.603 Sum_probs=84.6
Q ss_pred cEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHhCCCCccc-cccc
Q 022540 89 EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT 166 (295)
Q Consensus 89 ~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~ 166 (295)
+++++||++++++. |++++++|++|++|+++|++||.|+ ++.+||++||+..+.++|+|.+++|+|++|++| ||.+
T Consensus 134 ~~~v~~Ilv~~e~~--A~~i~~~l~~G~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~Lk~GevS~pi~t 211 (283)
T PRK02998 134 EMKVSHILVKDEKT--AKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQVSEPVKT 211 (283)
T ss_pred ceEEEEEEeCCHHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHcCCCCCcCCceEE
Confidence 58999999998655 9999999999999999999999998 778999999999999999999999999999999 9999
Q ss_pred cceeEEEeeehhhh
Q 022540 167 KFGWHLLQVLSERE 180 (295)
Q Consensus 167 ~~G~~ii~v~~~~~ 180 (295)
++|||++++.+++.
T Consensus 212 ~~G~hIikv~~~~~ 225 (283)
T PRK02998 212 TYGYHIIKVTDKKE 225 (283)
T ss_pred CCEEEEEEEeccCC
Confidence 99999999998654
No 36
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.76 E-value=1.3e-18 Score=135.67 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=79.9
Q ss_pred ccchhhhhhccCCCccccceeecCcch-------hHHhhcCCCCccccCccccCCC----Ccccc-----------ccCC
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREP-------EEVALSSLPGFQVLPLRQFGSW----GPDIT-----------VKFD 244 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~-------~e~~~ghIpgAinip~~~l~~~----~~~~~-----------~~~~ 244 (295)
++++++.+++.+ ....|||+|++ .+|..||||||+|+|+..+... ...+. ..++
T Consensus 2 i~~~~l~~~l~~----~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd01448 2 VSPDWLAEHLDD----PDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGIS 77 (122)
T ss_pred cCHHHHHHHhCC----CCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 567788888876 35789999999 9999999999999999766432 11110 1246
Q ss_pred CCCcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccccHhhccccc
Q 022540 245 PQKDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV 288 (295)
Q Consensus 245 ~~~~ivv~C~~-g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~ 288 (295)
++++|||||++ |.+|..++..|+..||++|++++||+.+|...+
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 78999999998 588999999999999999999999999997653
No 37
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=99.76 E-value=1.4e-18 Score=155.21 Aligned_cols=91 Identities=23% Similarity=0.423 Sum_probs=82.6
Q ss_pred ccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCcccccc--CCCCcHHHHHHHHhCCCCcc-c-
Q 022540 88 REILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVR--KGQLVPEFEEVAFTTPLNKV-A- 162 (295)
Q Consensus 88 ~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~--~~~~~~~~~~~~~~l~~G~v-s- 162 (295)
++|+++||++++++. |++++++|++|++|+++|++||+|+ ++.+||+|||+. .+.++|+|.+++++|++|++ |
T Consensus 143 ~~~~v~hIlv~~~~~--A~~v~~~l~~G~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a~~~L~~Geiss~ 220 (298)
T PRK04405 143 PKVTVQHILVSKKST--AETVIKKLKDGKDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTAAFKLKNGEYTTT 220 (298)
T ss_pred hhEEEEEEEecChHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHHHHcCCCCCccCC
Confidence 479999999997765 9999999999999999999999998 778999999885 46899999999999999998 5
Q ss_pred cccccceeEEEeeehhhh
Q 022540 163 RCKTKFGWHLLQVLSERE 180 (295)
Q Consensus 163 pv~~~~G~~ii~v~~~~~ 180 (295)
||++++||||+++.+...
T Consensus 221 pv~t~~GyhIikv~~~~~ 238 (298)
T PRK04405 221 PVKTTYGYEVIKMIKHPA 238 (298)
T ss_pred CEEeCCeEEEEEEeecCC
Confidence 999999999999987543
No 38
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.76 E-value=1.9e-18 Score=133.83 Aligned_cols=94 Identities=20% Similarity=0.360 Sum_probs=77.1
Q ss_pred cchhhhhhccCCCccccceeecCcchhHHhh-----------cCCCCccccCccccCCCCc---------cccc--cCCC
Q 022540 188 QPDELHKKMQDPNFHKEAQLIDVREPEEVAL-----------SSLPGFQVLPLRQFGSWGP---------DITV--KFDP 245 (295)
Q Consensus 188 s~~el~~~L~~~~~~~~~~iiDvR~~~e~~~-----------ghIpgAinip~~~l~~~~~---------~~~~--~~~~ 245 (295)
+++++.+.+++ ....|||+|+..||.. ||||||+|+|+..+..... ..+. .+++
T Consensus 2 s~~~l~~~l~~----~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (118)
T cd01449 2 TAEEVLANLDS----GDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITP 77 (118)
T ss_pred CHHHHHHhcCC----CCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCC
Confidence 56778887765 3578999999999987 9999999999976543210 1111 2357
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcc
Q 022540 246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 246 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
+++||+||++|.+|..++..|+.+||+++++++||+.+|.
T Consensus 78 ~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 78 DKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 8999999999999999999999999999999999999996
No 39
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.75 E-value=5.2e-19 Score=165.75 Aligned_cols=116 Identities=19% Similarity=0.309 Sum_probs=96.6
Q ss_pred cccChHhhhccccCCCCCCCCCCCccEEEeeEEeccc----------hHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccC
Q 022540 64 RSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKED----------DLNLLSELQRRVSQGEDLSDLAVEHSICPSKGE 133 (295)
Q Consensus 64 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~hIl~~~~----------~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~ 133 (295)
-.|.+.|...|..... ..+..+.+|+++||+|+.+ .+++|++++++|++|++|+++|++||+|+++.+
T Consensus 132 i~vs~~ei~~~~~~~~--~~~~~~~~~~~~~I~i~~~~~~s~~~~~~~~~~a~~l~~~l~~g~~F~~lA~~yS~~~~a~~ 209 (413)
T PRK10770 132 ITILPQEVDSLAKQIG--NQNDASTELNLSHILIPLPENPTQDQVDEAESQARSIVDQARNGADFGKLAIAYSADQQALK 209 (413)
T ss_pred CCCCHHHHHHHHHHHH--hhccccceEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCccccc
Confidence 4556666544432111 1124577899999999832 356799999999999999999999999998999
Q ss_pred CCccccccCCCCcHHHHHHHHhCCCCccc-cccccceeEEEeeehhhhh
Q 022540 134 GGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREA 181 (295)
Q Consensus 134 gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~~~~~~ 181 (295)
||+|||+..++|+++|.+++++|++|++| |+++++|||++++.+.++.
T Consensus 210 gGdlg~~~~~~l~~~~~~~~~~l~~G~is~Pi~t~~GyhIikl~~~~~~ 258 (413)
T PRK10770 210 GGQMGWGRIQELPGLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGE 258 (413)
T ss_pred CCcCCccccccccHHHHHHHHhCCCCCCCCcEECCCceEEEEEeeeccc
Confidence 99999999999999999999999999999 9999999999999987653
No 40
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.75 E-value=1.4e-18 Score=128.67 Aligned_cols=80 Identities=26% Similarity=0.303 Sum_probs=67.6
Q ss_pred ccceeecCcchhHHhhcCCCCccccCccccCCCCccccccC-CCCCcEEEEeCCChh--HHHHHHHHHHcCCCceEEccc
Q 022540 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF-DPQKDTYVMCHHGMR--SLQVAQWLQTQGFRRVFNVSG 279 (295)
Q Consensus 203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~-~~~~~ivv~C~~g~r--s~~aa~~L~~~G~~~v~~l~G 279 (295)
+.+.+||+|++.||..||||||+|+|+..+... . ...+ +++++|||||.+|.+ |..++..|++.||++|++|+|
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~--~-~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~G 85 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLSRLELD--A-WVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEG 85 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHHHHHhh--h-HhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccC
Confidence 467899999999999999999999999765321 1 1113 358899999999887 689999999999999999999
Q ss_pred cHhhcc
Q 022540 280 GIHAYA 285 (295)
Q Consensus 280 G~~~W~ 285 (295)
|+.+|.
T Consensus 86 G~~~W~ 91 (92)
T cd01532 86 GLQGWR 91 (92)
T ss_pred CHHHHc
Confidence 999996
No 41
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.75 E-value=1e-18 Score=131.23 Aligned_cols=81 Identities=25% Similarity=0.360 Sum_probs=68.3
Q ss_pred ccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 282 (295)
....+||+|++.||..||||||+|||+.++........ .+++++|||||++|.+|..++..|++.||++++++ ||+.
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~~~~--~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~-GG~~ 93 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIATAV--PDKNDTVKLYCNAGRQSGMAKDILLDMGYTHAENA-GGIK 93 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHHHhC--CCCCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEec-CCHH
Confidence 34579999999999999999999999987754322221 24678999999999999999999999999999885 9999
Q ss_pred hccc
Q 022540 283 AYAT 286 (295)
Q Consensus 283 ~W~~ 286 (295)
+|..
T Consensus 94 ~~~~ 97 (101)
T TIGR02981 94 DIAM 97 (101)
T ss_pred Hhhh
Confidence 9963
No 42
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.74 E-value=1.1e-18 Score=134.23 Aligned_cols=98 Identities=18% Similarity=0.286 Sum_probs=78.1
Q ss_pred cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccC--CCCCcEEEEeC-CChhHHHH
Q 022540 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCH-HGMRSLQV 262 (295)
Q Consensus 186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~--~~~~~ivv~C~-~g~rs~~a 262 (295)
.++++++.+++.... ....+||||++ ||..||||||+|+|+..+......+.... +++++|||||. +|.|+..+
T Consensus 3 ~is~~~l~~~~~~~~--~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~~~~~~~~~~~~~iv~yC~~~~~r~~~a 79 (113)
T cd01531 3 YISPAQLKGWIRNGR--PPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQLVQLLSGSKKDTVVFHCALSQVRGPSA 79 (113)
T ss_pred cCCHHHHHHHHHcCC--CCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHHHHHHHhcCCCCeEEEEeecCCcchHHH
Confidence 467888988886531 24679999999 99999999999999988765433333222 56789999998 67899988
Q ss_pred HHHHHH--------cCCCceEEccccHhhccc
Q 022540 263 AQWLQT--------QGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 263 a~~L~~--------~G~~~v~~l~GG~~~W~~ 286 (295)
+..|.+ .||.+|++|+||+.+|..
T Consensus 80 a~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~ 111 (113)
T cd01531 80 ARKFLRYLDEEDLETSKFEVYVLHGGFNAWES 111 (113)
T ss_pred HHHHHHHHHHhccccCCCeEEEEcChHHHHHh
Confidence 887754 499999999999999975
No 43
>PRK07411 hypothetical protein; Validated
Probab=99.74 E-value=2.4e-18 Score=159.27 Aligned_cols=108 Identities=29% Similarity=0.489 Sum_probs=90.2
Q ss_pred ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC-ccccccCCCCCcEEEEeCCChhHHHHH
Q 022540 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG-PDITVKFDPQKDTYVMCHHGMRSLQVA 263 (295)
Q Consensus 185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~-~~~~~~~~~~~~ivv~C~~g~rs~~aa 263 (295)
..++++++.+++++.. .+.++||||++.||..||||||+|||+..+.... ...+..++++++||+||.+|.||..++
T Consensus 282 ~~Is~~el~~~l~~~~--~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~~~~l~~l~~d~~IVvyC~~G~RS~~aa 359 (390)
T PRK07411 282 PEMTVTELKALLDSGA--DDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEKVKELLNGHRLIAHCKMGGRSAKAL 359 (390)
T ss_pred CccCHHHHHHHHhCCC--CCeEEEECCCHHHhccCcCCCCEEccHHHhhcccchHHHhhcCCCCeEEEECCCCHHHHHHH
Confidence 4577888888886531 2468999999999999999999999998775421 112234568899999999999999999
Q ss_pred HHHHHcCCCceEEccccHhhcccccCCCCCCC
Q 022540 264 QWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295 (295)
Q Consensus 264 ~~L~~~G~~~v~~l~GG~~~W~~~~~p~~p~~ 295 (295)
..|+..||++ +.+.||+.+|.+..+|++|.|
T Consensus 360 ~~L~~~G~~~-~~l~GG~~~W~~~~~p~~p~y 390 (390)
T PRK07411 360 GILKEAGIEG-TNVKGGITAWSREVDPSVPQY 390 (390)
T ss_pred HHHHHcCCCe-EEecchHHHHHHhcCCCCCCC
Confidence 9999999985 689999999999999999998
No 44
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.74 E-value=2.2e-18 Score=138.23 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=76.1
Q ss_pred ccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 282 (295)
....|||||++.+|..||||||+|+|...|... +..++++.+|||||.+|.+|..++..|+..||++|++|+||+.
T Consensus 10 ~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~----l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 10 GQTAVVDVTASANYVKRHIPGAWWVLRAQLAQA----LEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred CCeEEEECCCHHHHHcCCCCCceeCCHHHHHHH----HHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 357899999999999999999999998877433 4445778999999999999999999999999999999999999
Q ss_pred hcccccCCCC
Q 022540 283 AYATKVDPSI 292 (295)
Q Consensus 283 ~W~~~~~p~~ 292 (295)
+|...+.|..
T Consensus 86 aW~~~g~pl~ 95 (145)
T cd01535 86 AWIAAGLPVE 95 (145)
T ss_pred HHHHCCCCcc
Confidence 9999888754
No 45
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.73 E-value=4.5e-18 Score=124.43 Aligned_cols=81 Identities=36% Similarity=0.617 Sum_probs=71.0
Q ss_pred ccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 282 (295)
....|||+|++.+|..||||||+|+|+..+.... .....+++++|||||..|.++..++..|+..||.+++++.||+.
T Consensus 9 ~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~--~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 9 EDAVLLDVREPEEYAAGHIPGAINIPLSELEERA--ALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCeEEEECCCHHHHhccccCCCEecchHHHhhHH--HhhccCCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 5679999999999999999999999998664321 12335789999999999999999999999999999999999999
Q ss_pred hcc
Q 022540 283 AYA 285 (295)
Q Consensus 283 ~W~ 285 (295)
+|.
T Consensus 87 ~w~ 89 (89)
T cd00158 87 AWK 89 (89)
T ss_pred hcC
Confidence 994
No 46
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.73 E-value=3.4e-18 Score=153.48 Aligned_cols=102 Identities=21% Similarity=0.474 Sum_probs=85.9
Q ss_pred cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCcccc--ccCCCCCcEEEEeCCChhHHH
Q 022540 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT--VKFDPQKDTYVMCHHGMRSLQ 261 (295)
Q Consensus 184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~--~~~~~~~~ivv~C~~g~rs~~ 261 (295)
...++++++.+++.+ ++.+|||||++.||..||||||+|+|+..|.+....+. ....++++|++||++|.||..
T Consensus 111 ~~~is~~el~~~l~~----~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G~Rs~~ 186 (314)
T PRK00142 111 GTYLKPKEVNELLDD----PDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGGIRCEK 186 (314)
T ss_pred CcccCHHHHHHHhcC----CCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCCcHHHH
Confidence 345888899998876 56799999999999999999999999988765322221 123588999999999999999
Q ss_pred HHHHHHHcCCCceEEccccHhhcccccC
Q 022540 262 VAQWLQTQGFRRVFNVSGGIHAYATKVD 289 (295)
Q Consensus 262 aa~~L~~~G~~~v~~l~GG~~~W~~~~~ 289 (295)
++.+|+..||++|++|+||+.+|.....
T Consensus 187 aa~~L~~~Gf~~V~~L~GGi~~w~~~~~ 214 (314)
T PRK00142 187 ASAWMKHEGFKEVYQLEGGIITYGEDPE 214 (314)
T ss_pred HHHHHHHcCCCcEEEecchHHHHHHhhc
Confidence 9999999999999999999999987644
No 47
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.73 E-value=1.1e-18 Score=133.59 Aligned_cols=95 Identities=32% Similarity=0.570 Sum_probs=76.1
Q ss_pred cchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC------------ccccccCCCCCcEEEEeCC
Q 022540 188 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG------------PDITVKFDPQKDTYVMCHH 255 (295)
Q Consensus 188 s~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~------------~~~~~~~~~~~~ivv~C~~ 255 (295)
+++++.+.+.+ ...+|||+|++.+|..||||||+|+|+..+.... ......++++++|||||.+
T Consensus 1 s~~el~~~l~~----~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~ 76 (113)
T PF00581_consen 1 SPEELKEMLEN----ESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSS 76 (113)
T ss_dssp -HHHHHHHHTT----TTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESS
T ss_pred CHHHHHhhhhC----CCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeec
Confidence 46788888843 6789999999999999999999999996541110 1112234678899999999
Q ss_pred ChhHHHHHHH-----HHHcCCCceEEccccHhhccc
Q 022540 256 GMRSLQVAQW-----LQTQGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 256 g~rs~~aa~~-----L~~~G~~~v~~l~GG~~~W~~ 286 (295)
|.++..++.. |..+||++|++|+||+.+|.+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 77 GWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 9988877776 888999999999999999975
No 48
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=99.73 E-value=8.1e-18 Score=149.85 Aligned_cols=90 Identities=33% Similarity=0.613 Sum_probs=85.0
Q ss_pred cEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHhCCCCccc-cccc
Q 022540 89 EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT 166 (295)
Q Consensus 89 ~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~ 166 (295)
+++++||+++.++. |++++++|++|.||+++|++||.|+ ++.+||++||+..+.++|.|..++++|++|++| |+++
T Consensus 132 ~v~~~hIlv~~~~~--A~~i~~~l~~G~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L~~GevS~pi~t 209 (287)
T PRK03095 132 EIKASHILVKDEAT--AKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVKS 209 (287)
T ss_pred cEEEEEEEeCCHHH--HHHHHHHHHCCCCHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhCCCCCcCCceEE
Confidence 49999999998765 8999999999999999999999998 788999999999999999999999999999999 8999
Q ss_pred cceeEEEeeehhhh
Q 022540 167 KFGWHLLQVLSERE 180 (295)
Q Consensus 167 ~~G~~ii~v~~~~~ 180 (295)
++|||++++.++++
T Consensus 210 ~~G~hIikv~~~~~ 223 (287)
T PRK03095 210 QFGYHIIKVTDIKE 223 (287)
T ss_pred CCEEEEEEEeeecC
Confidence 99999999998764
No 49
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.72 E-value=3.7e-18 Score=131.36 Aligned_cols=99 Identities=22% Similarity=0.362 Sum_probs=74.3
Q ss_pred cccchhhhhhccCCC--ccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccC--CCCCcEEEEeCC-ChhHH
Q 022540 186 DIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCHH-GMRSL 260 (295)
Q Consensus 186 ~is~~el~~~L~~~~--~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~--~~~~~ivv~C~~-g~rs~ 260 (295)
.++++++++++.+.. ..+...|||||++ ||..||||||+|||+..+..+.......+ .+.++|||||.+ |.||.
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~rs~ 81 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGRGP 81 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHHHHHHHHhhhcCCCEEEEECCCCCcccH
Confidence 477889999887620 0024689999999 99999999999999987754433332222 346789999996 68888
Q ss_pred HHHHHHH----HcCC--CceEEccccHhhcc
Q 022540 261 QVAQWLQ----TQGF--RRVFNVSGGIHAYA 285 (295)
Q Consensus 261 ~aa~~L~----~~G~--~~v~~l~GG~~~W~ 285 (295)
.++.+|. +.|| .++++|+||+.+|.
T Consensus 82 ~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 82 RAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 8776654 3475 68999999999995
No 50
>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.4e-17 Score=119.90 Aligned_cols=91 Identities=30% Similarity=0.625 Sum_probs=81.8
Q ss_pred CCCCccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCCCc---
Q 022540 84 GGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNK--- 160 (295)
Q Consensus 84 ~~~~~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~--- 160 (295)
...+.-|.+||||....-+ +.+.++.|++|..|.++|.+||+|+ +..||+|||++++.|+-+|.+++|+|+++.
T Consensus 34 kgggtaVKvRHiLCEKqGK--i~EA~eKLk~G~~F~evAA~YSEdk-ar~GGDLGW~~RG~MvGPFQdaAFalpvs~~~~ 110 (133)
T KOG3258|consen 34 KGGGTAVKVRHILCEKQGK--INEAMEKLKSGMKFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQDAAFALPVSTVDK 110 (133)
T ss_pred CCCcceEEEEEeeehhhch--HHHHHHHHHcccchHHHHHHhccCc-cccCCcccceeccccccchhhhhhcccccccCC
Confidence 3567889999999988877 9999999999999999999999998 567999999999999999999999999884
Q ss_pred ---cc-cccccceeEEEeeeh
Q 022540 161 ---VA-RCKTKFGWHLLQVLS 177 (295)
Q Consensus 161 ---vs-pv~~~~G~~ii~v~~ 177 (295)
.+ ||++.+|||||.+..
T Consensus 111 pv~TdpP~KtkfGYHiImvEG 131 (133)
T KOG3258|consen 111 PVYTDPPVKTKFGYHIIMVEG 131 (133)
T ss_pred ccccCCCcccccceEEEEecc
Confidence 34 689999999997754
No 51
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.71 E-value=7.9e-18 Score=127.01 Aligned_cols=79 Identities=25% Similarity=0.391 Sum_probs=66.8
Q ss_pred cceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhh
Q 022540 204 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 283 (295)
Q Consensus 204 ~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 283 (295)
+-.+||+|++.||..||||||+|+|+..+..+...+. .+++++||+||++|.+|..++..|.+.||++|++ .||+.+
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l~~l~--~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~-~GG~~~ 96 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAV--PDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAEN-AGGLKD 96 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHHHHHHHHHhcC--CCCCCeEEEEeCCChHHHHHHHHHHHcCCCeEEe-cCCHHH
Confidence 3469999999999999999999999987754322221 2457889999999999999999999999999987 699999
Q ss_pred cc
Q 022540 284 YA 285 (295)
Q Consensus 284 W~ 285 (295)
|.
T Consensus 97 ~~ 98 (104)
T PRK10287 97 IA 98 (104)
T ss_pred Hh
Confidence 95
No 52
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=99.70 E-value=1e-17 Score=152.90 Aligned_cols=112 Identities=28% Similarity=0.425 Sum_probs=94.8
Q ss_pred ccChHhh-hccccCCCCCCCCC-CCccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCcccccc
Q 022540 65 SFTSPKA-ASFSSGTEGSSPGG-GDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVR 141 (295)
Q Consensus 65 ~~~~~e~-~~~~~~~~~~~~~~-~~~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~ 141 (295)
.|++.|. ++|..+.. .+. .+.+++++||++++++. |++++++|++|++|+++|++||.++ ++.+||++||+.
T Consensus 173 ~vsd~ei~~~y~~~~~---~~~~~p~~~~v~~I~~~~~~~--a~~~~~~l~~g~~F~~la~~~s~~~~~~~~~g~lg~~~ 247 (336)
T PRK00059 173 KVTDKDAQKYYNENKS---KFTEKPNTMHLAHILVKTEDE--AKKVKKRLDKGEDFAKVAKEVSQDPGSKDKGGDLGDVP 247 (336)
T ss_pred CCCHHHHHHHHHHhhh---hhcCCcceEEEEEEEecCHHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcccccc
Confidence 4555555 34444432 122 57799999999998755 9999999999999999999999997 888999999999
Q ss_pred C--CCCcHHHHHHHHhCCCCccc-cccccceeEEEeeehhhhh
Q 022540 142 K--GQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREA 181 (295)
Q Consensus 142 ~--~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~~~~~~ 181 (295)
. +.++|+|.+++++|++|++| |+.+++|||++++.+.++.
T Consensus 248 ~~~~~l~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~~~~~~ 290 (336)
T PRK00059 248 YSDSGYDKEFMDGAKALKEGEISAPVKTQFGYHIIKAIKKKEY 290 (336)
T ss_pred cccCccCHHHHHHHHcCCCCCcCccEecCCeEEEEEEEeeccC
Confidence 8 78999999999999999999 8999999999999987653
No 53
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.69 E-value=2.4e-17 Score=152.35 Aligned_cols=101 Identities=29% Similarity=0.375 Sum_probs=86.1
Q ss_pred ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHH
Q 022540 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 264 (295)
Q Consensus 185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~ 264 (295)
..++++++.+++.+ +..+||+|++.||..||||||+|+|+..+..+.... ..+++++||+||++|.||..++.
T Consensus 3 ~~is~~el~~~l~~-----~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~--~~~~~~~IvvyC~~G~rs~~aa~ 75 (376)
T PRK08762 3 REISPAEARARAAQ-----GAVLIDVREAHERASGQAEGALRIPRGFLELRIETH--LPDRDREIVLICASGTRSAHAAA 75 (376)
T ss_pred ceeCHHHHHHHHhC-----CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHHhhh--cCCCCCeEEEEcCCCcHHHHHHH
Confidence 34778888888864 468999999999999999999999998775442221 12678999999999999999999
Q ss_pred HHHHcCCCceEEccccHhhcccccCCCC
Q 022540 265 WLQTQGFRRVFNVSGGIHAYATKVDPSI 292 (295)
Q Consensus 265 ~L~~~G~~~v~~l~GG~~~W~~~~~p~~ 292 (295)
.|+..||++|++++||+.+|...+.|..
T Consensus 76 ~L~~~G~~~v~~l~GG~~~W~~~g~p~~ 103 (376)
T PRK08762 76 TLRELGYTRVASVAGGFSAWKDAGLPLE 103 (376)
T ss_pred HHHHcCCCceEeecCcHHHHHhcCCccc
Confidence 9999999999999999999998888764
No 54
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.66 E-value=1.9e-16 Score=125.96 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=75.7
Q ss_pred ccchhhhhhccCCCccccceeecCcch--------hHHhh------------cCCCCccccCccccCCCCc---------
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREP--------EEVAL------------SSLPGFQVLPLRQFGSWGP--------- 237 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~--------~e~~~------------ghIpgAinip~~~l~~~~~--------- 237 (295)
++.+++.+.+.+....++..|||+|.. .+|.. ||||||+|+|+..+.....
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 356778888763111146899999976 88988 9999999999865432111
Q ss_pred -cc---c--ccCCCCCcEEEEeCC---ChhHHHHHHHHHHcCCCceEEccccHhhcc
Q 022540 238 -DI---T--VKFDPQKDTYVMCHH---GMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 238 -~~---~--~~~~~~~~ivv~C~~---g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
.+ + ..+.++++|||||.+ |..+..++..|+.+|+++|++|+||+.+|.
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 11 1 134678999999986 778999999999999999999999999996
No 55
>PRK10788 periplasmic folding chaperone; Provisional
Probab=99.64 E-value=1.2e-16 Score=157.18 Aligned_cols=95 Identities=18% Similarity=0.261 Sum_probs=86.6
Q ss_pred CCCCccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHhCCCCccc
Q 022540 84 GGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA 162 (295)
Q Consensus 84 ~~~~~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs 162 (295)
...+++++++||+++.++. |++++++|++|++|+++|++||+|+ ++.+||+|||+..+.++++|.++++ +++|++|
T Consensus 265 ~~~~e~~~~~~i~~~~~~~--A~~~~~~l~~G~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~-~~~G~vs 341 (623)
T PRK10788 265 FTQPERKRYSIIQTKTEAE--AKAVLDELKKGADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGL-KEKGQLS 341 (623)
T ss_pred cCChhheeeeEEEECCHHH--HHHHHHHHhCCCCHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhc-cCCCCcC
Confidence 3567889999999986655 9999999999999999999999998 9999999999999999999999987 6889999
Q ss_pred -cccccceeEEEeeehhhhh
Q 022540 163 -RCKTKFGWHLLQVLSEREA 181 (295)
Q Consensus 163 -pv~~~~G~~ii~v~~~~~~ 181 (295)
|+++++||||+++...++.
T Consensus 342 ~pv~t~~G~~Iikv~~~~~~ 361 (623)
T PRK10788 342 GVIKSSVGFLIVRLDDIQPA 361 (623)
T ss_pred CcEEECCeEEEEEEEeeccC
Confidence 9999999999999987653
No 56
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.63 E-value=5.7e-16 Score=137.87 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=81.4
Q ss_pred cccchhhhhhccCCCccccceeecCcc----------hhHHhhcCCCCccccCccccCCCCc---cc----------c--
Q 022540 186 DIQPDELHKKMQDPNFHKEAQLIDVRE----------PEEVALSSLPGFQVLPLRQFGSWGP---DI----------T-- 240 (295)
Q Consensus 186 ~is~~el~~~L~~~~~~~~~~iiDvR~----------~~e~~~ghIpgAinip~~~l~~~~~---~~----------~-- 240 (295)
-++++++.+.+.+ ++..|||+|+ +.+|..||||||+|+|+..+..... .. +
T Consensus 6 lvs~~~l~~~l~~----~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T PRK11493 6 FVAADWLAEHIDD----PEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRE 81 (281)
T ss_pred ccCHHHHHHhcCC----CCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence 4778899999876 5679999996 6789999999999999865533211 01 1
Q ss_pred ccCCCCCcEEEEeCCChh-HHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540 241 VKFDPQKDTYVMCHHGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 241 ~~~~~~~~ivv~C~~g~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
..++++++|||||.++.+ +..++..|...||++|.+|+||+.+|...+.|.
T Consensus 82 ~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~ 133 (281)
T PRK11493 82 LGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLL 133 (281)
T ss_pred cCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCc
Confidence 124688999999998775 567788899999999999999999999887764
No 57
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.63 E-value=4.5e-16 Score=140.84 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=79.3
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHH-----------hhcCCCCccccCccccCCCCcc---------cc--ccCC
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEV-----------ALSSLPGFQVLPLRQFGSWGPD---------IT--VKFD 244 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~-----------~~ghIpgAinip~~~l~~~~~~---------~~--~~~~ 244 (295)
++.+++...+.+ ....|||+|++.|| ..||||||+|||+..+...... .+ ..++
T Consensus 192 ~~~~~v~~~~~~----~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~ 267 (320)
T PLN02723 192 WTLEQVKKNIED----KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGIS 267 (320)
T ss_pred ecHHHHHHhhcC----CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCC
Confidence 567788877765 45689999999988 4599999999999765432111 11 1357
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhccccc
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV 288 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~ 288 (295)
++++||+||++|.+|+.++..|+.+||++|++|+|||.+|....
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~ 311 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALP 311 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCC
Confidence 89999999999999999999999999999999999999998663
No 58
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.62 E-value=9.4e-16 Score=134.61 Aligned_cols=99 Identities=21% Similarity=0.301 Sum_probs=80.8
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHHhh----------cCCCCccccCccccCCCCc---------ccc--ccCCC
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL----------SSLPGFQVLPLRQFGSWGP---------DIT--VKFDP 245 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~----------ghIpgAinip~~~l~~~~~---------~~~--~~~~~ 245 (295)
++.+.+...+.. ...+|||+|++.+|.+ ||||||+|||+..+..... .+. ..+++
T Consensus 158 ~~~~~~~~~~~~----~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~ 233 (285)
T COG2897 158 VDATLVADALEV----PAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDP 233 (285)
T ss_pred CCHHHHHHHhcC----CCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCC
Confidence 444556666665 4567999999999988 9999999999987765211 111 23578
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccccC
Q 022540 246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 289 (295)
Q Consensus 246 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~ 289 (295)
+++||+||++|.+|+.....|+.+|+.++.+++|+|.+|....+
T Consensus 234 ~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~ 277 (285)
T COG2897 234 DKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPD 277 (285)
T ss_pred CCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCC
Confidence 99999999999999999999999999888999999999987755
No 59
>PRK12450 foldase protein PrsA; Reviewed
Probab=99.62 E-value=2.5e-16 Score=141.57 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=76.3
Q ss_pred cEEEeeEEeccchHHHHHHHHHHhc-CCCcHHHHHHHhCCCCCccCCCccccccC-CCCcHHHHHHHHhCCCCccc-cc-
Q 022540 89 EILVQHLLVKEDDLNLLSELQRRVS-QGEDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKVA-RC- 164 (295)
Q Consensus 89 ~~~~~hIl~~~~~~~~a~~~~~~i~-~g~~F~~~a~~~S~~~~~~~gG~lg~~~~-~~~~~~~~~~~~~l~~G~vs-pv- 164 (295)
+++++||++..++. |++++++|+ .|+||+++|++||.|+ ..||++||... ++|+|+|.+++|+|++|++| ||
T Consensus 148 ~~~~~~I~~~~~~~--A~~i~~~l~~~G~dF~~lAk~~S~~~--~~~g~~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i~ 223 (309)
T PRK12450 148 TMTAEIMQFEKEED--AKAALEAVKAEGADFAAIAKEKTIAA--DKKTTYTFDSGETTLPAEVVRAASGLKEGNRSEIIT 223 (309)
T ss_pred cceeEEEEeCCHHH--HHHHHHHHHhcCCCHHHHHHHhCCCc--ccCCcccccCCCCCCCHHHHHHHHcCCCCCcccccc
Confidence 68899999976654 999999998 5999999999999986 35889998754 57999999999999999998 55
Q ss_pred -----cccceeEEEeeehhhh
Q 022540 165 -----KTKFGWHLLQVLSERE 180 (295)
Q Consensus 165 -----~~~~G~~ii~v~~~~~ 180 (295)
++++||||+++.+.+.
T Consensus 224 ~~~pv~t~~GyhIikl~~~~~ 244 (309)
T PRK12450 224 ALDPATSKRTYHIIKVTKKAT 244 (309)
T ss_pred CCCccccCCceEEEEEecccc
Confidence 6899999999998764
No 60
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.61 E-value=3.2e-16 Score=140.30 Aligned_cols=87 Identities=36% Similarity=0.445 Sum_probs=68.1
Q ss_pred ceeecCcchhHHhhcCCCCccccCccccCCCC------------------------------ccccccCCCCCcEEEEeC
Q 022540 205 AQLIDVREPEEVALSSLPGFQVLPLRQFGSWG------------------------------PDITVKFDPQKDTYVMCH 254 (295)
Q Consensus 205 ~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~------------------------------~~~~~~~~~~~~ivv~C~ 254 (295)
..|||||++.||..||||||+|||+....+.. ..+....+++..|||||.
T Consensus 3 ~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC~ 82 (311)
T TIGR03167 3 DPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYCW 82 (311)
T ss_pred CEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEEC
Confidence 47999999999999999999999995432110 011112244556999995
Q ss_pred -CChhHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540 255 -HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 292 (295)
Q Consensus 255 -~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~ 292 (295)
+|.||..++.+|+..|| +|++++||+.+|...+.+.+
T Consensus 83 ~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~ 120 (311)
T TIGR03167 83 RGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQL 120 (311)
T ss_pred CCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhh
Confidence 78999999999999999 69999999999988776543
No 61
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.61 E-value=9.8e-16 Score=136.36 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=78.3
Q ss_pred chhhhhhccCCCccccceeecCcchhHHh-----------hcCCCCccccCccccCCCC-----cccc-----ccCCCCC
Q 022540 189 PDELHKKMQDPNFHKEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWG-----PDIT-----VKFDPQK 247 (295)
Q Consensus 189 ~~el~~~L~~~~~~~~~~iiDvR~~~e~~-----------~ghIpgAinip~~~l~~~~-----~~~~-----~~~~~~~ 247 (295)
.+++...+.. ....|||+|+..||. .||||||+|+|+..+.... .++. ..+++++
T Consensus 157 ~~~v~~~~~~----~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 232 (281)
T PRK11493 157 LTDVLLASHE----KTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDR 232 (281)
T ss_pred HHHHHHhhcC----CCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCC
Confidence 3455555544 356899999999995 6999999999997765321 1110 1246889
Q ss_pred cEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhccc-ccCCCC
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT-KVDPSI 292 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~-~~~p~~ 292 (295)
+||+||++|.||..++..|+.+||++|++|+|||.+|.. .+.|..
T Consensus 233 ~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~ 278 (281)
T PRK11493 233 PIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVE 278 (281)
T ss_pred CEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcC
Confidence 999999999999999999999999999999999999987 466654
No 62
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=99.60 E-value=7.9e-16 Score=138.51 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=78.4
Q ss_pred cEEEeeEEeccchHHHHHHHHHHhc-CCCcHHHHHHHhCCCCCccCCCccccccC-CCCcHHHHHHHHhCCCCccc-ccc
Q 022540 89 EILVQHLLVKEDDLNLLSELQRRVS-QGEDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKVA-RCK 165 (295)
Q Consensus 89 ~~~~~hIl~~~~~~~~a~~~~~~i~-~g~~F~~~a~~~S~~~~~~~gG~lg~~~~-~~~~~~~~~~~~~l~~G~vs-pv~ 165 (295)
+++++||++..++. |++++++|+ .|+||+++|++||. ++.+||+|||+.. +.++++|.+++|+|++|++| ||+
T Consensus 145 ~~~~~~I~~~~~~~--A~~i~~~l~~~G~dF~~lA~~~S~--s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~pv~ 220 (310)
T PRK01326 145 EVTAQIIRLDNEDK--AKSVLEEAKAEGADFAQIAKENTT--TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSDVIS 220 (310)
T ss_pred cccchhhhHhhhHH--HHHHHHHHHhCCCCHHHHHHHhCc--ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCCcee
Confidence 57999999876655 999999998 59999999999999 6678999999987 46888999999999999999 887
Q ss_pred c------cceeEEEeeehhhh
Q 022540 166 T------KFGWHLLQVLSERE 180 (295)
Q Consensus 166 ~------~~G~~ii~v~~~~~ 180 (295)
+ .+||||+++.+.++
T Consensus 221 t~~~~~~~~GyhIikv~~~~~ 241 (310)
T PRK01326 221 VLDPTAYQSKYYIVKVTKKTE 241 (310)
T ss_pred cCCCCcCCceEEEEEEeccCC
Confidence 6 78999999998764
No 63
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.59 E-value=2.8e-15 Score=135.63 Aligned_cols=103 Identities=16% Similarity=0.288 Sum_probs=81.0
Q ss_pred cccchhhhhhccCCCccccceeecCc--------c-hhHHhhcCCCCccccCccccCCCCccc-------------cc--
Q 022540 186 DIQPDELHKKMQDPNFHKEAQLIDVR--------E-PEEVALSSLPGFQVLPLRQFGSWGPDI-------------TV-- 241 (295)
Q Consensus 186 ~is~~el~~~L~~~~~~~~~~iiDvR--------~-~~e~~~ghIpgAinip~~~l~~~~~~~-------------~~-- 241 (295)
.++++++.+.+.+ ++..|||+| + ..+|..||||||+|+|+..+....... +.
T Consensus 23 lvs~~~L~~~l~~----~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~ 98 (320)
T PLN02723 23 VVSVDWLHANLRE----PDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSAL 98 (320)
T ss_pred eecHHHHHHHhcC----CCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHc
Confidence 4788899999876 467899996 3 368999999999999986654421111 11
Q ss_pred cCCCCCcEEEEeCCChh-HHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540 242 KFDPQKDTYVMCHHGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 292 (295)
Q Consensus 242 ~~~~~~~ivv~C~~g~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~ 292 (295)
.+.++++|||||.+|.. +..++..|+.+||++|++|+||+.+|..++.|..
T Consensus 99 Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~ 150 (320)
T PLN02723 99 GIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVE 150 (320)
T ss_pred CCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcc
Confidence 23578899999988765 5677888999999999999999999998887653
No 64
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.59 E-value=2.1e-15 Score=138.13 Aligned_cols=81 Identities=31% Similarity=0.521 Sum_probs=70.7
Q ss_pred cceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhh
Q 022540 204 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 283 (295)
Q Consensus 204 ~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 283 (295)
...|||+|++.||..||||||+|+|+..+..... ...++++++|++||++|.+|..++..|++.||++|++++||+.+
T Consensus 274 ~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~--~~~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~ 351 (355)
T PRK05597 274 GVTLIDVREPSEFAAYSIPGAHNVPLSAIREGAN--PPSVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEG 351 (355)
T ss_pred CCEEEECCCHHHHccCcCCCCEEeCHHHhhhccc--cccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHH
Confidence 4689999999999999999999999987654211 11256889999999999999999999999999999999999999
Q ss_pred ccc
Q 022540 284 YAT 286 (295)
Q Consensus 284 W~~ 286 (295)
|.+
T Consensus 352 W~~ 354 (355)
T PRK05597 352 WLD 354 (355)
T ss_pred Hhh
Confidence 964
No 65
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.59 E-value=2.9e-15 Score=145.54 Aligned_cols=102 Identities=17% Similarity=0.248 Sum_probs=83.0
Q ss_pred cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCC-------CCc------cccc--cCCCCCcEE
Q 022540 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGS-------WGP------DITV--KFDPQKDTY 250 (295)
Q Consensus 186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~-------~~~------~~~~--~~~~~~~iv 250 (295)
.++++++.+.+++ ++.+|||+|++.+|..||||||+|+|+..+.. ..+ ..+. .++++++||
T Consensus 10 lIs~~eL~~~l~~----~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VV 85 (610)
T PRK09629 10 VIEPNDLLERLDA----PELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYV 85 (610)
T ss_pred eecHHHHHHHhcC----CCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEE
Confidence 4788999999976 46899999999999999999999999753211 001 1111 236799999
Q ss_pred EEeCCC-hhHHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540 251 VMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 251 v~C~~g-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
|||++| .++..++..|+.+||++|++|+||+.+|..++.|.
T Consensus 86 vYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~ 127 (610)
T PRK09629 86 VYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPL 127 (610)
T ss_pred EECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCcc
Confidence 999977 57889999999999999999999999999988875
No 66
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.58 E-value=5.9e-16 Score=133.74 Aligned_cols=167 Identities=18% Similarity=0.350 Sum_probs=121.6
Q ss_pred eEEeccc--------hHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCCCc-cccc
Q 022540 94 HLLVKED--------DLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNK-VARC 164 (295)
Q Consensus 94 hIl~~~~--------~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~-vspv 164 (295)
.|||+.+ ..+.++.+.+.|.+-..|+++.-+.|...... |. .|--.+.+.+-+|-..+ +.|-
T Consensus 38 rillA~EGINgtvsG~~e~~~~~~~~l~a~~~f~~l~~K~s~~~~~p-------F~--r~kVk~kkEIV~lg~~ddv~p~ 108 (308)
T COG1054 38 RILLAHEGINGTVSGSAEAIEAYMAWLRADPGFADLRFKISEADEKP-------FW--RLKVKLKKEIVALGVEDDVDPL 108 (308)
T ss_pred EEEEccCCcceeEecCHHHHHHHHHHHHhCcccccceeeeccccCCC-------cc--eEEEeehhhheecCCCCCcCcc
Confidence 4666654 35568889999988778999988887754210 11 11122333444554444 4442
Q ss_pred cccceeEEEeeehhhhhhhcccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCcccccc--
Q 022540 165 KTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVK-- 242 (295)
Q Consensus 165 ~~~~G~~ii~v~~~~~~~~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~-- 242 (295)
..- -..++++++.++|.+ ++.++||.|+..||+.||..||++.+...|.++.++....
T Consensus 109 ~~v----------------G~yl~p~~wn~~l~D----~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~ 168 (308)
T COG1054 109 ENV----------------GTYLSPKDWNELLSD----PDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLD 168 (308)
T ss_pred ccc----------------cCccCHHHHHHHhcC----CCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHH
Confidence 211 234778999999998 6789999999999999999999999998776654433221
Q ss_pred CCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccccC
Q 022540 243 FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 289 (295)
Q Consensus 243 ~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~ 289 (295)
.-++++|+.||.+|.|+.+++.+|...||++|+.|+||+-.+.+...
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~~ 215 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDVG 215 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhhcC
Confidence 23677999999999999999999999999999999999998876543
No 67
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=99.57 E-value=3.3e-15 Score=129.35 Aligned_cols=112 Identities=16% Similarity=0.068 Sum_probs=91.8
Q ss_pred ccChHhh-hccccCCCCCCCCCCCccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCC
Q 022540 65 SFTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKG 143 (295)
Q Consensus 65 ~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~ 143 (295)
.+++.|. ++|..+.. .+..+.+|+++||+++.+ ...++++++++++|++|+++|.+++... ...+|.+||+..+
T Consensus 116 ~vse~ev~~~Y~~~~~---~f~~~~~~~~~hIlv~~~-~~~a~~~~~~l~~g~~f~~la~~~~~~~-~~~~~~~~~~~~~ 190 (232)
T TIGR02925 116 KPSPEEAKSYFQEHPQ---LFAERKLYNLQEIALPPD-MELLDELRAMVENGKPLEDILAWLKAKN-VPFNASSAARPAE 190 (232)
T ss_pred CCCHHHHHHHHHhCHH---hcCCCceEEEEEEEecCC-hhHHHHHHHHHhcCCCHHHHHHHhhhcC-cccccccccCchh
Confidence 4555554 45554432 235678999999999854 3358999999999999999999988643 3457889999999
Q ss_pred CCcHHHHHHHHhCCCCccccccccceeEEEeeehhhhh
Q 022540 144 QLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREA 181 (295)
Q Consensus 144 ~~~~~~~~~~~~l~~G~vspv~~~~G~~ii~v~~~~~~ 181 (295)
+++|+|.+++++|++|+++|+++++|||++++.+.++.
T Consensus 191 ~l~~~~~~a~~~l~~G~is~v~s~~G~hiikv~~~~~~ 228 (232)
T TIGR02925 191 QLPAEILAVLAKLKPGAPLVVQGPNNVLILVLADAQPA 228 (232)
T ss_pred hCCHHHHHHHHhCCCCCeEEeecCCceEEEEEeccccC
Confidence 99999999999999999999999999999999887653
No 68
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.57 E-value=1.1e-15 Score=138.74 Aligned_cols=97 Identities=31% Similarity=0.482 Sum_probs=73.6
Q ss_pred chhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC-----------------------ccc------
Q 022540 189 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG-----------------------PDI------ 239 (295)
Q Consensus 189 ~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~-----------------------~~~------ 239 (295)
..++...+. .+..|||||++.||..||||||+|+|+....+.. +.+
T Consensus 5 ~~~~~~~~~-----~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~ 79 (345)
T PRK11784 5 AQDFRALFL-----NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREE 79 (345)
T ss_pred HHHHHHHHh-----CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHH
Confidence 445555544 3568999999999999999999999995432100 000
Q ss_pred -cccCC-CCCcEEEEeC-CChhHHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540 240 -TVKFD-PQKDTYVMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 240 -~~~~~-~~~~ivv~C~-~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
...++ ++++|||||. +|.||..++.+|...|| +++++.||+.+|...+.++
T Consensus 80 ~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~ 133 (345)
T PRK11784 80 AWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDT 133 (345)
T ss_pred HHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHH
Confidence 01122 7889999994 78999999999999999 5999999999998766543
No 69
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.56 E-value=4.2e-15 Score=136.58 Aligned_cols=93 Identities=29% Similarity=0.438 Sum_probs=75.6
Q ss_pred cccchhhhhhccCCCccccceeecCcchhHHhhcCCC---CccccCccccCCCCc--cccccCCCCCcEEEEeCCChhHH
Q 022540 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLP---GFQVLPLRQFGSWGP--DITVKFDPQKDTYVMCHHGMRSL 260 (295)
Q Consensus 186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIp---gAinip~~~l~~~~~--~~~~~~~~~~~ivv~C~~g~rs~ 260 (295)
.++++++.+++.+ ...++||||++.||+.|||| ||+|||+..+..+.. ..+..++++ +|||||++|.||.
T Consensus 272 ~~~~~el~~~l~~----~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~~~~~l~~~~~~-~Ivv~C~sG~RS~ 346 (370)
T PRK05600 272 RTDTTSLIDATLN----GSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDADILHALSPIDGD-NVVVYCASGIRSA 346 (370)
T ss_pred ccCHHHHHHHHhc----CCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchhhhhhccccCCC-cEEEECCCChhHH
Confidence 4677888888876 34689999999999999998 599999988854310 112233455 9999999999999
Q ss_pred HHHHHHHHcCCCc-eEEccccHhh
Q 022540 261 QVAQWLQTQGFRR-VFNVSGGIHA 283 (295)
Q Consensus 261 ~aa~~L~~~G~~~-v~~l~GG~~~ 283 (295)
.++..|++.||++ |+++.||+.+
T Consensus 347 ~Aa~~L~~~G~~~~v~~l~GG~~~ 370 (370)
T PRK05600 347 DFIEKYSHLGHELTLHNLPGGVNA 370 (370)
T ss_pred HHHHHHHHcCCCCceEEeccccCC
Confidence 9999999999986 9999999853
No 70
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.55 E-value=6.6e-15 Score=143.07 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=79.6
Q ss_pred cccchhhhhhccCCCccccceeecCcchhHHh--------hcCCCCccccCccccCCCC---------cccc--ccCCCC
Q 022540 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVA--------LSSLPGFQVLPLRQFGSWG---------PDIT--VKFDPQ 246 (295)
Q Consensus 186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~--------~ghIpgAinip~~~l~~~~---------~~~~--~~~~~~ 246 (295)
.++.+++.+.+.+ .+..|||+|++.||. .||||||+|||+..+.... ..++ ..++++
T Consensus 148 ~v~~e~v~~~l~~----~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~ 223 (610)
T PRK09629 148 TATREYLQSRLGA----ADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPD 223 (610)
T ss_pred cccHHHHHHhhCC----CCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCC
Confidence 3667888888865 467899999999995 6999999999986542211 1111 124789
Q ss_pred CcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccc
Q 022540 247 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK 287 (295)
Q Consensus 247 ~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 287 (295)
++||+||++|.+|+.++..|+.+||++|++++|||.+|...
T Consensus 224 ~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~ 264 (610)
T PRK09629 224 KEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNH 264 (610)
T ss_pred CCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCC
Confidence 99999999999999999999999999999999999999865
No 71
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.49 E-value=3e-14 Score=112.55 Aligned_cols=98 Identities=15% Similarity=0.084 Sum_probs=72.3
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC---c-----------cccccC--CCCCcEE
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG---P-----------DITVKF--DPQKDTY 250 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~---~-----------~~~~~~--~~~~~iv 250 (295)
++++++.+.++... +..++||+|+..+|..||||||+|+|+..+.... . .....+ .++++||
T Consensus 2 is~~~l~~~l~~~~--~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VV 79 (132)
T cd01446 2 IDCAWLAALLREGG--ERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGESLAVV 79 (132)
T ss_pred cCHHHHHHHHhcCC--CCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCCCCeEE
Confidence 57788888887531 3679999999999999999999999987532100 0 000011 1578999
Q ss_pred EEeCCChh---------HHHHHHHHHH--cCCCceEEccccHhhccc
Q 022540 251 VMCHHGMR---------SLQVAQWLQT--QGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 251 v~C~~g~r---------s~~aa~~L~~--~G~~~v~~l~GG~~~W~~ 286 (295)
|||.++.+ +..++..|.. .|+.+|++|+||+.+|..
T Consensus 80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 99997765 5666677776 477889999999999965
No 72
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.48 E-value=2.3e-14 Score=125.70 Aligned_cols=109 Identities=27% Similarity=0.474 Sum_probs=89.9
Q ss_pred cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCcc-ccccC-CCCCcEEEEeCCChhHHH
Q 022540 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPD-ITVKF-DPQKDTYVMCHHGMRSLQ 261 (295)
Q Consensus 184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~-~~~~~-~~~~~ivv~C~~g~rs~~ 261 (295)
...++..++++++++. +...++|||++.||+..|+|+|+|||+.++.....+ ....+ ...++|+|+|+.|+.|..
T Consensus 316 ~~Rvsv~d~k~il~~~---~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~~~~~~~~~~~~~~I~ViCrrGNdSQ~ 392 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSG---AKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSGKKLQGDLNTESKDIFVICRRGNDSQR 392 (427)
T ss_pred hhcccHHHHHHHHhcC---CCeEEEeccCcceEEEEecccccccchhhhhhhhhhhhcccccccCCCEEEEeCCCCchHH
Confidence 3457788888888874 567999999999999999999999999888665331 11112 246789999999999999
Q ss_pred HHHHHHHcCC-CceEEccccHhhcccccCCCCCCC
Q 022540 262 VAQWLQTQGF-RRVFNVSGGIHAYATKVDPSIPTY 295 (295)
Q Consensus 262 aa~~L~~~G~-~~v~~l~GG~~~W~~~~~p~~p~~ 295 (295)
+++.|++... .+|+.+.||+.+|..+.+|++|.|
T Consensus 393 Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~fP~Y 427 (427)
T KOG2017|consen 393 AVRILREKFPDSSVRDVIGGLKAWAAKVDPNFPLY 427 (427)
T ss_pred HHHHHHhhCCchhhhhhhhHHHHHHHhcCcCCCCC
Confidence 9999998654 368899999999999999999998
No 73
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.29 E-value=3.1e-12 Score=121.84 Aligned_cols=73 Identities=26% Similarity=0.389 Sum_probs=64.3
Q ss_pred ccceeecCcchhHHhhcCCCC----ccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEcc
Q 022540 203 KEAQLIDVREPEEVALSSLPG----FQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVS 278 (295)
Q Consensus 203 ~~~~iiDvR~~~e~~~ghIpg----Ainip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~ 278 (295)
++..+||+|++.||..||||| |+|+|+..+... ...+++++++++||++|.||..++..|++.||+||+++.
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~----~~~l~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ----FGDLDQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYR 481 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH----HhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecC
Confidence 356899999999999999999 999999887543 334678899999999999999999999999999998875
Q ss_pred c
Q 022540 279 G 279 (295)
Q Consensus 279 G 279 (295)
+
T Consensus 482 ~ 482 (482)
T PRK01269 482 P 482 (482)
T ss_pred C
Confidence 3
No 74
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.27 E-value=1.1e-11 Score=109.09 Aligned_cols=107 Identities=20% Similarity=0.186 Sum_probs=78.5
Q ss_pred cccchhhhhhccCCCc-cccceeecCcc--hhHHhhcCCCCccccCccccCCCCc---ccc------------ccCCCCC
Q 022540 186 DIQPDELHKKMQDPNF-HKEAQLIDVRE--PEEVALSSLPGFQVLPLRQFGSWGP---DIT------------VKFDPQK 247 (295)
Q Consensus 186 ~is~~el~~~L~~~~~-~~~~~iiDvR~--~~e~~~ghIpgAinip~~~l~~~~~---~~~------------~~~~~~~ 247 (295)
-++++.+.+.|.+.+. ..++.+++++. ..+|..+|||||+++++..+..... ..+ ..+..+.
T Consensus 12 lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~d~ 91 (285)
T COG2897 12 LVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRNDD 91 (285)
T ss_pred EEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCCCC
Confidence 3677788888775210 01344555544 4889999999999999976543221 111 1236789
Q ss_pred cEEEEeCCC-hhHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540 248 DTYVMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 292 (295)
Q Consensus 248 ~ivv~C~~g-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~ 292 (295)
+||+|...+ .-|+.++..|+-+|+++|++|+||+.+|..+++|+.
T Consensus 92 tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~ 137 (285)
T COG2897 92 TVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLE 137 (285)
T ss_pred EEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCcc
Confidence 999999755 457899999999999999999999999999999875
No 75
>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=5.9e-12 Score=112.64 Aligned_cols=94 Identities=39% Similarity=0.693 Sum_probs=83.7
Q ss_pred CccEEEeeEEeccchHHHHHHHHHHhcCC-----CcHHHHHHHhCCCCCcc-CCCccccccCCCCcHHHHHHHHhCCCCc
Q 022540 87 DREILVQHLLVKEDDLNLLSELQRRVSQG-----EDLSDLAVEHSICPSKG-EGGMLGWVRKGQLVPEFEEVAFTTPLNK 160 (295)
Q Consensus 87 ~~~~~~~hIl~~~~~~~~a~~~~~~i~~g-----~~F~~~a~~~S~~~~~~-~gG~lg~~~~~~~~~~~~~~~~~l~~G~ 160 (295)
.++++++||++..++. +.++...++.+ .+|+++|+++|.|++.. .||++||...+.++|+|.++++.+++|+
T Consensus 166 ~~~~~~~~i~~~~~~~--a~~~~~~~~~~~~~~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~~~g~ 243 (320)
T COG0760 166 VTEVQARHILVKAEAK--AKEALALLKKGVREAKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVGE 243 (320)
T ss_pred HHHHhhcccccCchHh--HHHHHHHHHhccccccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhccCcc
Confidence 5789999999999987 77777777766 79999999999999554 5788899999999999999999999999
Q ss_pred cc-cccccceeEEEeeehhhhhh
Q 022540 161 VA-RCKTKFGWHLLQVLSEREAS 182 (295)
Q Consensus 161 vs-pv~~~~G~~ii~v~~~~~~~ 182 (295)
++ |+++.+|||++++.+.++..
T Consensus 244 ~~~pv~t~~g~~ii~v~~~~~~~ 266 (320)
T COG0760 244 VSAPVKTSFGYHIIKVEKKRDAK 266 (320)
T ss_pred cccccccchHHHHHHHHhhhhhh
Confidence 99 99999999999998877654
No 76
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=3.3e-11 Score=106.09 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=77.7
Q ss_pred hhcccccchhhhhhccCCC--ccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCC---CCCcEEEEeC-C
Q 022540 182 SLLQDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD---PQKDTYVMCH-H 255 (295)
Q Consensus 182 ~~~~~is~~el~~~L~~~~--~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~---~~~~ivv~C~-~ 255 (295)
..+..|+++.+..+|+... ....+.|||+|-+.||.+|||+||+||+..+..+..--...... ....+||||. +
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCefS 232 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKDGVPSGSKRVILIFHCEFS 232 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhccccccccccCceeEEEEeeec
Confidence 4566799999999887621 11235799999999999999999999998755332111111111 2356889997 6
Q ss_pred ChhHHHHHHHHHH------------cCCCceEEccccHhhcccc
Q 022540 256 GMRSLQVAQWLQT------------QGFRRVFNVSGGIHAYATK 287 (295)
Q Consensus 256 g~rs~~aa~~L~~------------~G~~~v~~l~GG~~~W~~~ 287 (295)
..|...+|..|+. +-|+.+|+|+||+..|-..
T Consensus 233 q~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 233 QERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred cccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 7899999999984 3677899999999999643
No 77
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.88 E-value=2.3e-09 Score=92.78 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=68.8
Q ss_pred ccceeecCcchhHHh-----------hcCCCCccccCccccCCCCcccc-----------ccCCCCCcEEEEeCCChhHH
Q 022540 203 KEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGPDIT-----------VKFDPQKDTYVMCHHGMRSL 260 (295)
Q Consensus 203 ~~~~iiDvR~~~e~~-----------~ghIpgAinip~~~l~~~~~~~~-----------~~~~~~~~ivv~C~~g~rs~ 260 (295)
.++..+|.|...+|. .||||||+|+|+.++-.+.+... ..+..++|+++-|++|..+.
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~ 250 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISAS 250 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHH
Confidence 467899999998884 38999999999987655432221 13356899999999999999
Q ss_pred HHHHHHHHcCCCceEEccccHhhccc
Q 022540 261 QVAQWLQTQGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 261 ~aa~~L~~~G~~~v~~l~GG~~~W~~ 286 (295)
..+..|.+.| .++.+++|++.+|.-
T Consensus 251 ~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 251 IIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred HHHHHHHhcC-CCcceecccHHHHhh
Confidence 9999999999 789999999999985
No 78
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.43 E-value=6.2e-07 Score=77.84 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=75.2
Q ss_pred ccchhhhhhccCCCccccceeecCc---------chhHHhhcCCCCccccCccccCCCCccc---------------ccc
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVR---------EPEEVALSSLPGFQVLPLRQFGSWGPDI---------------TVK 242 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR---------~~~e~~~ghIpgAinip~~~l~~~~~~~---------------~~~ 242 (295)
++++-+.+.+.+ ....|||.- ...||...|||||.++.++......... ...
T Consensus 7 v~~~~v~~~~~~----~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 7 VSVKWVMENLGN----HGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cChHHHHHhCcC----CCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 455566666665 467788872 3457888899999999887653221000 112
Q ss_pred CCCCCcEEEEeC--CChh-HHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540 243 FDPQKDTYVMCH--HGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 292 (295)
Q Consensus 243 ~~~~~~ivv~C~--~g~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~ 292 (295)
+.+++-+|||.+ .|.- |++++.+++-.|+++|..|+||+..|+..+.|..
T Consensus 83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~ 135 (286)
T KOG1529|consen 83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVD 135 (286)
T ss_pred CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccc
Confidence 367888999998 6654 6788899999999999999999999999988754
No 79
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.16 E-value=7.6e-07 Score=77.90 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=73.3
Q ss_pred hhhcccccchhhhhhccCCCccc---cceeecCcchhHHhhcCCCCccccCccccCCCCcccc-ccCCCCCcEEEEeC-C
Q 022540 181 ASLLQDIQPDELHKKMQDPNFHK---EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT-VKFDPQKDTYVMCH-H 255 (295)
Q Consensus 181 ~~~~~~is~~el~~~L~~~~~~~---~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~-~~~~~~~~ivv~C~-~ 255 (295)
...+..++++.++..++.. +.. .+.|||+|-+.||.+|||-.||||.-.+-.. ..++ .-+.--.-+|++|. +
T Consensus 238 ~Ds~~RIs~etlk~vl~g~-~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~--~~F~hkplThp~aLifHCEfS 314 (427)
T COG5105 238 SDSIQRISVETLKQVLEGM-YNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLG--LLFRHKPLTHPRALIFHCEFS 314 (427)
T ss_pred ccchhhcCHHHHHHHHhch-hhhhhhceeEEeecceeeecCceeeeeeecchHHHHH--HHHHhccccCceeEEEEeecc
Confidence 3456678888888887642 212 3579999999999999999999997642111 0111 11223456899998 6
Q ss_pred ChhHHHHHHHHHHc------------CCCceEEccccHhhcc
Q 022540 256 GMRSLQVAQWLQTQ------------GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 256 g~rs~~aa~~L~~~------------G~~~v~~l~GG~~~W~ 285 (295)
..|+...|.+|+.+ -|+.|++|+||+..+-
T Consensus 315 shRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy 356 (427)
T COG5105 315 SHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFY 356 (427)
T ss_pred cccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHh
Confidence 78999999999753 4678999999998764
No 80
>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A.
Probab=98.00 E-value=1.6e-06 Score=66.51 Aligned_cols=89 Identities=22% Similarity=0.324 Sum_probs=59.8
Q ss_pred CCCccEEEeeEEeccchHHHHHHHHHHhc--CCCcHHHHHHHhCCCCCccCCCccccccC-CCCcHHHHHHHHhCCCCcc
Q 022540 85 GGDREILVQHLLVKEDDLNLLSELQRRVS--QGEDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKV 161 (295)
Q Consensus 85 ~~~~~~~~~hIl~~~~~~~~a~~~~~~i~--~g~~F~~~a~~~S~~~~~~~gG~lg~~~~-~~~~~~~~~~~~~l~~G~v 161 (295)
..+..+.+.+++++.+.. ++...+.++ .+.+|.+++..++.+. ..+++... ..++++|.++++.|+.|++
T Consensus 18 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~l~~g~~ 90 (121)
T PF13145_consen 18 SQPERRIFQIIFFKAEDA--AEAAKALAKKKAGEDFAALAKKYSIDQ-----SDLGIFTDESDLPPEFADALFKLKPGEV 90 (121)
T ss_dssp --EEEEEEEEEEESSCCH--HHHHHHHHHHHCHHHHHHHHHCTHCCC-----CCCCCCETTHHH-HHHHCCHTT-STT-E
T ss_pred CCcccEEEEEEEeCCHHH--HHHHHHHHhhcccchHHHHHHhcCCcc-----ccccccccccccCHHHHHHHhcCCCCCe
Confidence 445566666777776654 333333333 4458999988887764 23344444 3477899999999999999
Q ss_pred c-cccccceeEEEeeehhhh
Q 022540 162 A-RCKTKFGWHLLQVLSERE 180 (295)
Q Consensus 162 s-pv~~~~G~~ii~v~~~~~ 180 (295)
| |+.+..||+++++....+
T Consensus 91 s~~i~~~~~~~v~~v~~~~~ 110 (121)
T PF13145_consen 91 SGPIESGNGYYVVKVKERNP 110 (121)
T ss_dssp EEEEEETTEEEEEEEEEEEE
T ss_pred eeeEEECCEEEEEEEEeecC
Confidence 9 899999999999988665
No 81
>PRK10788 periplasmic folding chaperone; Provisional
Probab=97.95 E-value=6e-05 Score=74.58 Aligned_cols=145 Identities=11% Similarity=0.040 Sum_probs=97.9
Q ss_pred cchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCCCCCCCccEEEeeEEeccch-------
Q 022540 30 SSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDD------- 101 (295)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~hIl~~~~~------- 101 (295)
.+.. ..+|+.+ +.||.|+.++.++|++||+..+.++++|+.+.+..+...+.+...+..+|+-++.=..++
T Consensus 290 ~l~~-G~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~~~~G~vs~pv~t~~G~~Iikv~~~~~~~~~~~~e 368 (623)
T PRK10788 290 ELKK-GADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKPLSE 368 (623)
T ss_pred HHhC-CCCHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhccCCCCcCCcEEECCeEEEEEEEeeccCCCCCHHH
Confidence 4444 4699999 999999999999999999999999999999988533334456677788888777653221
Q ss_pred ----------H--------HHHHHHHHHhc-CCCcHHHHHHHhCCCCCccCCCccccccCCC-----CcHHHHHHHHhC-
Q 022540 102 ----------L--------NLLSELQRRVS-QGEDLSDLAVEHSICPSKGEGGMLGWVRKGQ-----LVPEFEEVAFTT- 156 (295)
Q Consensus 102 ----------~--------~~a~~~~~~i~-~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~-----~~~~~~~~~~~l- 156 (295)
. ..++.+.+.+. .|.+|+++|++..-.. ...+|+..+. -.+++..++|..
T Consensus 369 vk~~I~~~l~~~ka~~~~~~~~~~l~~~~~~~~~~l~~~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~aF~~~ 443 (623)
T PRK10788 369 VRDDIAAKVKQEKALDAYYALQQKVSDAASNDNESLASAEQAAGVKA-----VQTGWFSRDNVPAELNFKPVAQAIFNGG 443 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHcCCeE-----EEcCCcCCCCCccccCCHHHHHHHcChH
Confidence 0 12334444443 4558999888754221 1112333321 135688999984
Q ss_pred ------CCCccc-ccccc-ceeEEEeeehhhh
Q 022540 157 ------PLNKVA-RCKTK-FGWHLLQVLSERE 180 (295)
Q Consensus 157 ------~~G~vs-pv~~~-~G~~ii~v~~~~~ 180 (295)
++|..| ++... .+|.++++.+..+
T Consensus 444 v~~~~~~~g~~s~~i~~~~~~~~vv~v~~~~p 475 (623)
T PRK10788 444 LVGENGAPGSNSDVITVDGDRAFVLRISEHKP 475 (623)
T ss_pred hhhccccCCCCCCCEEEcCCEEEEEEEcccCc
Confidence 468888 56654 5688888887654
No 82
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=97.85 E-value=1.9e-06 Score=63.82 Aligned_cols=87 Identities=10% Similarity=-0.052 Sum_probs=74.5
Q ss_pred CchhhhhccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCC
Q 022540 9 ASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGG 86 (295)
Q Consensus 9 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~ 86 (295)
.|+.+.+.++.....++.+++++..+...|..+ +.||++..++.++|.+||+....+.++++.+.|.+++++++ +...
T Consensus 5 ~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs~pi~t 84 (95)
T PF00639_consen 5 KPPPSDEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALFALKPGEVSKPIET 84 (95)
T ss_dssp ESTTSCCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHHTSTTTSBEEEEEE
T ss_pred ECCCchhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHHhCCCCCcCCCEEE
Confidence 344578888888999999999999988789999 99999999999999999999999999999999999887654 4566
Q ss_pred CccEEEeeE
Q 022540 87 DREILVQHL 95 (295)
Q Consensus 87 ~~~~~~~hI 95 (295)
+..||+-++
T Consensus 85 ~~G~~Ii~v 93 (95)
T PF00639_consen 85 DNGYHIIKV 93 (95)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEE
Confidence 667776554
No 83
>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A.
Probab=97.76 E-value=7e-06 Score=63.27 Aligned_cols=83 Identities=10% Similarity=-0.045 Sum_probs=63.0
Q ss_pred hhhccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEe-cccccChHhhhccccCCCCC-CCCCCCcc
Q 022540 13 LCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHI-ISRSFTSPKAASFSSGTEGS-SPGGGDRE 89 (295)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~-~~~~~~~~ 89 (295)
+....+......+.+.+.+. +.++|+.+ ..||+|+.+..++|++||+. ...+.++|+.++|.++++++ .+...+..
T Consensus 29 ~~~~~~~ak~~a~~i~~~l~-~G~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~~~l~~G~is~~v~s~~G 107 (117)
T PF13616_consen 29 SSRSKEEAKKKADSILKQLK-SGADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAAFSLKVGEISGPVESPNG 107 (117)
T ss_dssp --------HHHHHHHHHHHH-CTCCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHHHHS-TTECTCEEEETTE
T ss_pred ccchhHHHHHHHHHHHHHHH-CCCCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHHHcCCCCCCCCeEEECCE
Confidence 33444444566667777776 56699999 99999999999999999999 99999999999999988876 45677788
Q ss_pred EEEeeEE
Q 022540 90 ILVQHLL 96 (295)
Q Consensus 90 ~~~~hIl 96 (295)
+|+-+++
T Consensus 108 ~hIikv~ 114 (117)
T PF13616_consen 108 YHIIKVT 114 (117)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8877664
No 84
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=1.9e-05 Score=61.40 Aligned_cols=76 Identities=11% Similarity=-0.034 Sum_probs=61.5
Q ss_pred cccccccccccCccchhccCCchhhhhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCCC-CCCCccEEE
Q 022540 17 TQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSP-GGGDREILV 92 (295)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~ 92 (295)
|+..++.|+.|+..+..+-..|..|..-..|..++..+|+||+|.+++|-++||.++|.+.+++++. ....-.+|+
T Consensus 82 keeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrgqMqk~FEdaafaL~~ge~SgiV~t~SG~Hi 158 (163)
T KOG3259|consen 82 KEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRGQMQKPFEDAAFALKVGEMSGIVDTDSGVHI 158 (163)
T ss_pred HHHHHHHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCcccccccccccccchhhhhhcccccccCceecCCceEE
Confidence 4455577889999999998899999444558899999999999999999999999999999876554 344445543
No 85
>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00024 Score=52.37 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=41.5
Q ss_pred hhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCC
Q 022540 32 LSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS 81 (295)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 81 (295)
.+++ .|... .+||+|. ++.+|+|||+.++.||-||..++|.++....
T Consensus 61 k~G~-~F~evAA~YSEdk--ar~GGDLGW~~RG~MvGPFQdaAFalpvs~~ 108 (133)
T KOG3258|consen 61 KSGM-KFNEVAAQYSEDK--ARQGGDLGWMTRGSMVGPFQDAAFALPVSTV 108 (133)
T ss_pred Hccc-chHHHHHHhccCc--cccCCcccceeccccccchhhhhhccccccc
Confidence 3444 88888 9999998 8999999999999999999999999988643
No 86
>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional
Probab=97.21 E-value=7.1e-05 Score=57.47 Aligned_cols=80 Identities=10% Similarity=-0.058 Sum_probs=64.7
Q ss_pred hccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEE
Q 022540 15 AITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILV 92 (295)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~ 92 (295)
+.+......++.+++.+..+..+|+.+ ..||++ .+...+|.+||+....+.++|..+.+.+++++++ +...+..+|+
T Consensus 32 ~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~-~~~~~gG~lG~~~~~~L~~~~~~a~~~L~~Geis~Pi~t~~G~hI 110 (115)
T PTZ00356 32 RSKEEAIKELAKWREQIVSGEKTFEEIARQRSDC-GSAAKGGDLGFFGRGQMQKPFEDAAFALKVGEISDIVHTDSGVHI 110 (115)
T ss_pred ccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCC-chhhcCccceeEcccccCHHHHHHHHcCCCCCCCCcEEECCEEEE
Confidence 445566667888888887776799999 999987 5667899999999999999999999999887764 5667777777
Q ss_pred eeE
Q 022540 93 QHL 95 (295)
Q Consensus 93 ~hI 95 (295)
-++
T Consensus 111 lk~ 113 (115)
T PTZ00356 111 ILR 113 (115)
T ss_pred EEE
Confidence 655
No 87
>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional
Probab=96.96 E-value=0.00055 Score=50.38 Aligned_cols=69 Identities=6% Similarity=-0.111 Sum_probs=55.2
Q ss_pred ccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCC-CCCCCCccEEEeeEE
Q 022540 26 LSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS-SPGGGDREILVQHLL 96 (295)
Q Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~hIl 96 (295)
.+++.+..+ .+|+.+ .+||+++.. ..+|++||+....+.++|+++++.++.+++ .+...+..+|+-+++
T Consensus 20 ~i~~~l~~g-~~F~~la~~~S~~~~~-~~gG~lg~~~~~~l~~~f~~a~~~l~~G~vs~Pi~t~~G~hIlkv~ 90 (93)
T PRK15441 20 DLLEQIKNG-ADFGKLAKKHSICPSG-KRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 90 (93)
T ss_pred HHHHHHHCC-CCHHHHHHHhCCCchh-hcCccceeecccccCHHHHHHHHhCCCCCcCCcEEcCCEEEEEEEE
Confidence 344455444 699999 999999854 578999999999999999999999988765 456777888877664
No 88
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.72 E-value=0.00045 Score=60.27 Aligned_cols=90 Identities=28% Similarity=0.427 Sum_probs=61.2
Q ss_pred hhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCC-----------C------------cccc------
Q 022540 190 DELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW-----------G------------PDIT------ 240 (295)
Q Consensus 190 ~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~-----------~------------~~~~------ 240 (295)
+.++.++. .+..++|||.+.||..|+.|+++|+|.-.-... . +.+.
T Consensus 6 q~~~~~~~-----~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~a 80 (334)
T COG2603 6 QDYRALLL-----ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEA 80 (334)
T ss_pred HHHHHHHh-----cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455544 356899999999999999999999997321110 0 0000
Q ss_pred -ccCCCCCcEEEEeC-CChhHHHHHHHH-HHcCCCceEEccccHhhcc
Q 022540 241 -VKFDPQKDTYVMCH-HGMRSLQVAQWL-QTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 241 -~~~~~~~~ivv~C~-~g~rs~~aa~~L-~~~G~~~v~~l~GG~~~W~ 285 (295)
..+.-+.|+-++|. +|.||...+.+| ...|++ ..-+.||+.+..
T Consensus 81 sk~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 81 SKAFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred HHHHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 01123667778897 567999999999 778864 556779987653
No 89
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=96.65 E-value=0.00057 Score=60.05 Aligned_cols=74 Identities=9% Similarity=-0.142 Sum_probs=58.1
Q ss_pred ccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeEE
Q 022540 22 PTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLL 96 (295)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl 96 (295)
...+.+++.+..+...|+.+ ..||+++ ++..||++||...+.+.++|+.+.+.+++++++ |...+..+|+-.+.
T Consensus 143 ~~a~~l~~~l~~g~~~F~~lA~~~S~~~-sa~~GGdlG~~~~~~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlkl~ 218 (256)
T TIGR02933 143 TRILAILRRLRGKPAAFAEQAMRHSHCP-TAMEGGLLGWVSRGLLYPQLDAALFQLAEGELSPPIESEIGWHLLLCE 218 (256)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHhCCCC-ccccCCccCCcCCCccChHHHHHHHcCCCCCcCCceeeCCeEEEEEEe
Confidence 33445556665666789999 9999998 567899999999999999999999999887655 55667777666443
No 90
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=96.44 E-value=0.0032 Score=56.54 Aligned_cols=70 Identities=9% Similarity=-0.004 Sum_probs=57.6
Q ss_pred CccchhccCCchhh-hhhccccCCCCCCCcceeEec--ccccChHhhhccccCCCCC--CCCCCCccEEEeeEEec
Q 022540 28 SSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHII--SRSFTSPKAASFSSGTEGS--SPGGGDREILVQHLLVK 98 (295)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~--~~~~~~~~~~~~hIl~~ 98 (295)
.+.+..| .+|+.+ +.||.++.+..+||++||+.. ..++++|+.++|.++++++ .|...+..||+-.++=.
T Consensus 162 ~~~l~~G-~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a~~~L~~Geiss~pv~t~~GyhIikv~~~ 236 (298)
T PRK04405 162 IKKLKDG-KDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTAAFKLKNGEYTTTPVKTTYGYEVIKMIKH 236 (298)
T ss_pred HHHHHCC-CCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHHHHcCCCCCccCCCEEeCCeEEEEEEeec
Confidence 3445444 599999 999999999999999998753 5789999999999988875 47788889999888754
No 91
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=95.96 E-value=0.0046 Score=55.25 Aligned_cols=71 Identities=4% Similarity=-0.025 Sum_probs=57.9
Q ss_pred cCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeEEec
Q 022540 27 SSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLLVK 98 (295)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl~~ 98 (295)
.++.+..| .+|+.+ +.||.++.+..++|.+||+....+.++|+.++|.+++++++ |...+..||+-++.=.
T Consensus 149 i~~~l~~G-~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L~~GevS~pi~t~~G~hIikv~~~ 221 (287)
T PRK03095 149 VKEELGQG-KSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVKSQFGYHIIKVTDI 221 (287)
T ss_pred HHHHHHCC-CCHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhCCCCCcCCceEECCEEEEEEEeee
Confidence 34455555 599999 99999999999999999999999999999999999887665 4566677877777544
No 92
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=95.51 E-value=0.0068 Score=54.05 Aligned_cols=72 Identities=7% Similarity=-0.006 Sum_probs=57.7
Q ss_pred ccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeEEec
Q 022540 26 LSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLLVK 98 (295)
Q Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl~~ 98 (295)
..++.+.. ..+|+.+ +.||.++.+..++|.+||+..+.+.++|+.++|.+++++++ +...+..||+-.+.=+
T Consensus 150 ~i~~~l~~-G~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~Lk~GevS~pi~t~~G~hIikv~~~ 223 (283)
T PRK02998 150 EVKEKVNN-GEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQVSEPVKTTYGYHIIKVTDK 223 (283)
T ss_pred HHHHHHHC-CCCHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHcCCCCCcCCceEECCEEEEEEEecc
Confidence 34455544 4599999 99999999999999999999999999999999999887765 4566677777666543
No 93
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=95.00 E-value=0.0087 Score=56.96 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=64.9
Q ss_pred hhcccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccC-----CCCCcEEEEeCCC
Q 022540 182 SLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF-----DPQKDTYVMCHHG 256 (295)
Q Consensus 182 ~~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~-----~~~~~ivv~C~~g 256 (295)
...+.++.+++..+ ....++|.|...||..+|+++++|+|+. +.+..-.....+ ...+.++++....
T Consensus 619 e~~prmsAedl~~~-------~~l~v~d~r~~~ef~r~~~s~s~nip~~-~~ea~l~~~~~l~~~~~~~~~~~v~~~~~~ 690 (725)
T KOG1093|consen 619 EHCPRISAEDLIWL-------KMLYVLDTRQESEFQREHFSDSINIPFN-NHEADLDWLRFLPGIVCSEGKKCVVVGKND 690 (725)
T ss_pred hcCccccHHHHHHH-------HHHHHHhHHHHHHHHHhhccccccCCcc-chHHHHHHhhcchHhHHhhCCeEEEeccch
Confidence 44555666665554 2457999999999999999999999997 222110111111 1345566665555
Q ss_pred hhHHHHHHHHHHcCCCceEEccccHhhccc
Q 022540 257 MRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 257 ~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~ 286 (295)
.-++.....+..+.+.+++.+.+|++....
T Consensus 691 K~~~e~~~~~~~mk~p~~cil~~~~~~~~~ 720 (725)
T KOG1093|consen 691 KHAAERLTELYVMKVPRICILHDGFNNIDP 720 (725)
T ss_pred HHHHHHhhHHHHhcccHHHHHHHHHhhcCc
Confidence 557777777777778889999999996543
No 94
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=94.93 E-value=0.026 Score=50.33 Aligned_cols=68 Identities=9% Similarity=-0.056 Sum_probs=55.9
Q ss_pred ccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeEEe
Q 022540 29 SSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLLV 97 (295)
Q Consensus 29 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl~ 97 (295)
..+.. ..+|+.+ +.||.++.+...+|.+||+....+.++|+.++|.+++++++ |...+..+|+-.+.=
T Consensus 155 ~~l~~-G~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~L~~GevS~pI~t~~G~hIikv~~ 224 (285)
T PRK03002 155 KKLDA-GASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQISNPVKSPNGYHIIKLTD 224 (285)
T ss_pred HHHHC-CCCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHcCCCCCcCCcEEECCEEEEEEEee
Confidence 34443 4699999 99999999889999999999999999999999999887654 566777777766643
No 95
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=94.43 E-value=0.0016 Score=58.83 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=53.3
Q ss_pred chhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCC--ChhH----HHH
Q 022540 189 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHH--GMRS----LQV 262 (295)
Q Consensus 189 ~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~--g~rs----~~a 262 (295)
++++++.+.+ ...++|+|....|+.+||||++|+|...+..|..++.. .+..+++++.-.. +... ..+
T Consensus 18 ~~~~~~~l~~-----~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~-~~~~~~i~l~~~~~~~~~f~~l~~~~ 91 (314)
T PRK00142 18 PEAFRDEHLA-----LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKA-DPRFADIRFKISEDDGHAFPRLSVKV 91 (314)
T ss_pred HHHHHHHHHH-----HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhh-CcCCCCceEEeccccCCCcccceeee
Confidence 4567776663 45789999999999999999999999877776555543 2234555555432 1222 344
Q ss_pred HHHHHHcCCC-ceE
Q 022540 263 AQWLQTQGFR-RVF 275 (295)
Q Consensus 263 a~~L~~~G~~-~v~ 275 (295)
...|...|++ ++.
T Consensus 92 ~~eLv~~G~d~~v~ 105 (314)
T PRK00142 92 RKEIVALGLDDDID 105 (314)
T ss_pred eeeeeecCCCCCCC
Confidence 5555666764 443
No 96
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=93.42 E-value=0.095 Score=41.27 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=20.5
Q ss_pred CCCcEEEEeCCChhHHHHHHHH-HHcCCC
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWL-QTQGFR 272 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L-~~~G~~ 272 (295)
.+.||++||.+|.|+..++.++ ...|.+
T Consensus 85 ~~~pvL~HC~sG~Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 85 AEGPVLAYCRSGTRSSLLWGFRQAAEGVP 113 (135)
T ss_pred CCCCEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 4689999999999988776543 334543
No 97
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=92.93 E-value=0.085 Score=47.70 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=39.6
Q ss_pred ccchhccCCchhh-hhhccccCCCCCCCcceeEeccc-ccChHhhhccccCCCCCCC
Q 022540 29 SSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISR-SFTSPKAASFSSGTEGSSP 83 (295)
Q Consensus 29 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~ 83 (295)
+.+...+.+|+.+ ++||. ++.+||++||+.... +.++|+.++|.+++++++.
T Consensus 164 ~~l~~~G~dF~~lA~~~S~---s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~ 217 (310)
T PRK01326 164 EEAKAEGADFAQIAKENTT---TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSD 217 (310)
T ss_pred HHHHhCCCCHHHHHHHhCc---ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCC
Confidence 3443335699999 99987 567899999987654 4557999999998877654
No 98
>PRK12450 foldase protein PrsA; Reviewed
Probab=92.85 E-value=0.087 Score=47.61 Aligned_cols=68 Identities=7% Similarity=-0.071 Sum_probs=48.0
Q ss_pred CccchhccCCchhh-hhhccccCCCCCCCcceeEe-cccccChHhhhccccCCCCCCC-------CCCCccEEEeeEEec
Q 022540 28 SSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHI-ISRSFTSPKAASFSSGTEGSSP-------GGGDREILVQHLLVK 98 (295)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~-------~~~~~~~~~~hIl~~ 98 (295)
.+.+...+.+|+.+ ++||.+. ..+|.+||.. ...++++|+.++|.+.++++++ ...+..||+-.+.=.
T Consensus 166 ~~~l~~~G~dF~~lAk~~S~~~---~~~g~~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i~~~~pv~t~~GyhIikl~~~ 242 (309)
T PRK12450 166 LEAVKAEGADFAAIAKEKTIAA---DKKTTYTFDSGETTLPAEVVRAASGLKEGNRSEIITALDPATSKRTYHIIKVTKK 242 (309)
T ss_pred HHHHHhcCCCHHHHHHHhCCCc---ccCCcccccCCCCCCCHHHHHHHHcCCCCCccccccCCCccccCCceEEEEEecc
Confidence 33444334699999 9999764 3567788765 3479999999999998887653 245667777665543
No 99
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=91.39 E-value=0.18 Score=45.96 Aligned_cols=72 Identities=7% Similarity=-0.157 Sum_probs=56.5
Q ss_pred ccCccchhccCCchhh-hhhccccCCCCCCCcceeEec--ccccChHhhhccccCCCCCC-CCCCCccEEEeeEEec
Q 022540 26 LSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHII--SRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLLVK 98 (295)
Q Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl~~ 98 (295)
.+++.+..+ .+|+.+ ..||.++.++..+|.+||... ..+.+++..+.|.++.++++ |...+..+|+-++.=.
T Consensus 212 ~~~~~l~~g-~~F~~la~~~s~~~~~~~~~g~lg~~~~~~~~l~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~~~ 287 (336)
T PRK00059 212 KVKKRLDKG-EDFAKVAKEVSQDPGSKDKGGDLGDVPYSDSGYDKEFMDGAKALKEGEISAPVKTQFGYHIIKAIKK 287 (336)
T ss_pred HHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcccccccccCccCHHHHHHHHcCCCCCcCccEecCCeEEEEEEEee
Confidence 344455454 499999 999999998999999999887 66788899999998887765 5667777887777544
No 100
>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=0.14 Score=45.24 Aligned_cols=59 Identities=8% Similarity=-0.047 Sum_probs=46.2
Q ss_pred ccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEE
Q 022540 34 IFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILV 92 (295)
Q Consensus 34 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~ 92 (295)
...+|..+ +.++.++.....++.++|...+.++++|+.++|....++++ |......+|+
T Consensus 196 ~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~~~g~~~~pv~t~~g~~i 256 (320)
T COG0760 196 AKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVGEVSAPVKTSFGYHI 256 (320)
T ss_pred ccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhccCcccccccccchHHHH
Confidence 45799999 99999998887677888888999999999999998877544 4444444433
No 101
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=86.53 E-value=0.89 Score=34.46 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=16.9
Q ss_pred CCCcEEEEeCCChhHHHHHHHH
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWL 266 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L 266 (295)
..+||++||++|.||...+..-
T Consensus 85 ~~~Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 85 LPKPVLAHCRSGTRASALWALA 106 (110)
T ss_dssp TTTSEEEE-SCSHHHHHHHHHH
T ss_pred CCCCEEEECCCChhHHHHHHHH
Confidence 4579999999999998776543
No 102
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=78.38 E-value=1.1 Score=39.23 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=55.7
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccC-----CCCccccccC---------C---CCCcE
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG-----SWGPDITVKF---------D---PQKDT 249 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~-----~~~~~~~~~~---------~---~~~~i 249 (295)
.+..++.+.+.. ....++|.|+ +..||.+|+|+-+..+. ...-.+.+.+ + +..++
T Consensus 6 ~s~~wlnr~l~~----~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~v 77 (343)
T KOG1717|consen 6 KSVAWLNRQLEL----GNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTV 77 (343)
T ss_pred HHHHHHHhhccc----CceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCccee
Confidence 445677777776 4679999999 57799999987654331 1110110111 1 12467
Q ss_pred EEEeCCCh----hHH------HHHHHHHHcCCCceEEccccHhhcccccC
Q 022540 250 YVMCHHGM----RSL------QVAQWLQTQGFRRVFNVSGGIHAYATKVD 289 (295)
Q Consensus 250 vv~C~~g~----rs~------~aa~~L~~~G~~~v~~l~GG~~~W~~~~~ 289 (295)
+.|..+.. .+. ..-+.++..|+. ++.+.||+..+..+..
T Consensus 78 ilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e~~ 126 (343)
T KOG1717|consen 78 ILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAEAS 126 (343)
T ss_pred eecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhhhh
Confidence 77776511 011 111345667874 8999999988766544
No 103
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=74.72 E-value=3.2 Score=32.35 Aligned_cols=36 Identities=22% Similarity=0.125 Sum_probs=30.0
Q ss_pred EEEEeCC-ChhHHHHHHHHHHc----CCCceEEccccHhhc
Q 022540 249 TYVMCHH-GMRSLQVAQWLQTQ----GFRRVFNVSGGIHAY 284 (295)
Q Consensus 249 ivv~C~~-g~rs~~aa~~L~~~----G~~~v~~l~GG~~~W 284 (295)
|+|+|.+ -.||.+|...|+.+ +-.++.+...|..+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 6899985 46899999888877 556789999999988
No 104
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=73.89 E-value=1.3 Score=40.15 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=42.7
Q ss_pred ccchhhhhhccCCCccccceeecCcchhHHhh---cCCC-CccccCc-cccCCCCccccccCCCCCcEEEEeCCChhH
Q 022540 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL---SSLP-GFQVLPL-RQFGSWGPDITVKFDPQKDTYVMCHHGMRS 259 (295)
Q Consensus 187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~---ghIp-gAinip~-~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs 259 (295)
+...++.+.+.+ .++.|||+|...+|.+ |||| |.- |- ..|.......+..+++.++|++-|.+....
T Consensus 138 ~gKt~Ll~~L~~----~~~~VvDlr~~a~hrGs~fG~~~~~~q--psq~~fe~~L~~~l~~~~~~~~i~~e~es~~ig 209 (311)
T TIGR03167 138 SGKTELLHALAN----AGAQVLDLEGLANHRGSSFGALGLGPQ--PSQKRFENALAEALRRLDPGRPIFVEDESRRIG 209 (311)
T ss_pred cCHHHHHHHHhc----CCCeEEECCchHHhcCcccCCCCCCCC--CchHHHHHHHHHHHHhCCCCceEEEEeCchhhc
Confidence 556778888876 4578999999999988 8998 421 21 112111111223356778899988875443
No 105
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=67.28 E-value=6.7 Score=31.77 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=23.2
Q ss_pred CCCCcEEEEe-C----CChhHHHHHHHHHHcCCCceEEccccHhh
Q 022540 244 DPQKDTYVMC-H----HGMRSLQVAQWLQTQGFRRVFNVSGGIHA 283 (295)
Q Consensus 244 ~~~~~ivv~C-~----~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 283 (295)
+++..++++| . .|..-..++..|+++|..+..+|+||-..
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 4555555554 4 25667888999999999999999998653
No 106
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=65.94 E-value=8.8 Score=29.70 Aligned_cols=29 Identities=17% Similarity=0.389 Sum_probs=19.8
Q ss_pred CCCCcEEEEeCCCh-hHHH-HHH-HHHHcCCC
Q 022540 244 DPQKDTYVMCHHGM-RSLQ-VAQ-WLQTQGFR 272 (295)
Q Consensus 244 ~~~~~ivv~C~~g~-rs~~-aa~-~L~~~G~~ 272 (295)
..+.+|+|+|..|. ||.. ++. .+...|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 46789999999884 7764 333 44556654
No 107
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=64.95 E-value=5.3 Score=34.16 Aligned_cols=59 Identities=12% Similarity=-0.071 Sum_probs=44.8
Q ss_pred CCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCCCCCCCccEEEeeEE
Q 022540 36 QKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREILVQHLL 96 (295)
Q Consensus 36 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~hIl 96 (295)
..|+.+ ..+++ .+. ..++.+||.....+.++|..+.+.++++++++...+..+|+-.+.
T Consensus 164 ~~f~~la~~~~~-~~~-~~~~~~~~~~~~~l~~~~~~a~~~l~~G~is~v~s~~G~hiikv~ 223 (232)
T TIGR02925 164 KPLEDILAWLKA-KNV-PFNASSAARPAEQLPAEILAVLAKLKPGAPLVVQGPNNVLILVLA 223 (232)
T ss_pred CCHHHHHHHhhh-cCc-ccccccccCchhhCCHHHHHHHHhCCCCCeEEeecCCceEEEEEe
Confidence 367777 55553 333 345678999999999999999999998877777788888776653
No 108
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.76 E-value=9.2 Score=29.36 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=17.8
Q ss_pred CCCcEEEEeCCChhHHHHHHH
Q 022540 245 PQKDTYVMCHHGMRSLQVAQW 265 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~ 265 (295)
.+.||+.||++|.||...+..
T Consensus 86 aegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 86 AEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred hCCCEEeeecCCchHHHHHHH
Confidence 578999999999999877554
No 109
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=61.86 E-value=8 Score=36.40 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=47.3
Q ss_pred cceeecCcchhHHhhcCCCCccccCccccCCCCccc-------c-c---cCC----CCCcEEEEeCCChh------HHHH
Q 022540 204 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI-------T-V---KFD----PQKDTYVMCHHGMR------SLQV 262 (295)
Q Consensus 204 ~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~-------~-~---~~~----~~~~ivv~C~~g~r------s~~a 262 (295)
+..++|.|+.++|..||+-.|.|+.-.-+.+....+ + . .+. .+..-+++-.+|.. -...
T Consensus 326 rFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfmGsGr~EED~YmnMvi 405 (669)
T KOG3636|consen 326 RFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFMGSGRDEEDNYMNMVI 405 (669)
T ss_pred EEEEEeccchhhcccccchhhhcccHHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEeccCcchHHHHHHHHH
Confidence 457999999999999999999987643222211100 0 0 011 22244555555532 1223
Q ss_pred HHHHHHcCCCceEEccccHhhcc
Q 022540 263 AQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 263 a~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
|..|++ +-..|..+.||+....
T Consensus 406 A~FlQK-nk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 406 AMFLQK-NKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHhc-CceEEEEecchHHHHH
Confidence 334444 4345889999988765
No 110
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=57.88 E-value=13 Score=28.88 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=28.0
Q ss_pred EEEEeCC-ChhHHHHHHHHHHcCCCceEEccccHhhcc
Q 022540 249 TYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 249 ivv~C~~-g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
|+|+|.+ -.||.+|..+|+...-.++.+...|..+|.
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~~ 38 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAWV 38 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCCC
Confidence 5788974 468999999998765345778888888773
No 111
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=56.17 E-value=20 Score=29.13 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=24.4
Q ss_pred CCCCcEEEEeCCChh---HHHHHHHHHHcCCCceEE
Q 022540 244 DPQKDTYVMCHHGMR---SLQVAQWLQTQGFRRVFN 276 (295)
Q Consensus 244 ~~~~~ivv~C~~g~r---s~~aa~~L~~~G~~~v~~ 276 (295)
.+..+|+|+|.+|+. +..+|++|...|++ |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 577889999998764 56889999999996 655
No 112
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=55.72 E-value=16 Score=28.01 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=18.2
Q ss_pred CCCCcEEEEeCCCh-hHHHH-HHH-HHHcCC
Q 022540 244 DPQKDTYVMCHHGM-RSLQV-AQW-LQTQGF 271 (295)
Q Consensus 244 ~~~~~ivv~C~~g~-rs~~a-a~~-L~~~G~ 271 (295)
..+++|+|+|..|. ||..+ +.+ +...|+
T Consensus 79 ~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 79 EKGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred hcCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 35689999999885 77643 333 344444
No 113
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=54.72 E-value=17 Score=27.71 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=19.0
Q ss_pred CCCCcEEEEeCCCh-hHHH-HHH-HHHHcCCC
Q 022540 244 DPQKDTYVMCHHGM-RSLQ-VAQ-WLQTQGFR 272 (295)
Q Consensus 244 ~~~~~ivv~C~~g~-rs~~-aa~-~L~~~G~~ 272 (295)
..+.+|+|+|..|. ||.. ++. .+...|++
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred cccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 46789999999884 6653 344 34445653
No 114
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=54.48 E-value=5.7 Score=32.37 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=18.5
Q ss_pred ccCCCCCcEEEEeCCC-hhHH-HHHHHHHHcC
Q 022540 241 VKFDPQKDTYVMCHHG-MRSL-QVAQWLQTQG 270 (295)
Q Consensus 241 ~~~~~~~~ivv~C~~g-~rs~-~aa~~L~~~G 270 (295)
..+..+++|+++|.+| .|+. .||..|.++|
T Consensus 128 ~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 128 ARLENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 3446789999999987 5765 5666777766
No 115
>PRK10126 tyrosine phosphatase; Provisional
Probab=53.83 E-value=23 Score=28.07 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=28.8
Q ss_pred CcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccccHhhc
Q 022540 247 KDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284 (295)
Q Consensus 247 ~~ivv~C~~-g~rs~~aa~~L~~~G~~~v~~l~GG~~~W 284 (295)
..|+|+|.+ -.||..|..+|+..+ ..+.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCC
Confidence 479999974 368999999998876 3466777888776
No 116
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=52.74 E-value=19 Score=26.33 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=23.6
Q ss_pred CCcEEEEeCCChhHHHHHHHHH----HcCCCceEEccccH
Q 022540 246 QKDTYVMCHHGMRSLQVAQWLQ----TQGFRRVFNVSGGI 281 (295)
Q Consensus 246 ~~~ivv~C~~g~rs~~aa~~L~----~~G~~~v~~l~GG~ 281 (295)
.+.|++.|.+|..|..++..++ +.|++ +.+-..++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~ 41 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSY 41 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecH
Confidence 4579999999988777766554 46774 44444444
No 117
>PLN02727 NAD kinase
Probab=52.39 E-value=15 Score=37.94 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=44.9
Q ss_pred ccccchhhhhhccCCCccccc-eeecCcchhHHhhcCC------------CCccccCccccCCCC----ccccccC-C-C
Q 022540 185 QDIQPDELHKKMQDPNFHKEA-QLIDVREPEEVALSSL------------PGFQVLPLRQFGSWG----PDITVKF-D-P 245 (295)
Q Consensus 185 ~~is~~el~~~L~~~~~~~~~-~iiDvR~~~e~~~ghI------------pgAinip~~~l~~~~----~~~~~~~-~-~ 245 (295)
..++++++.++.+. ++ .||+.|...|- .+.. -.-+++|+....... ..+...+ + .
T Consensus 267 gQpspe~la~LA~~-----GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~sl 340 (986)
T PLN02727 267 GQVTEEGLKWLLEK-----GFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSS 340 (986)
T ss_pred CCCCHHHHHHHHHC-----CCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhc
Confidence 35677778776554 34 69999987762 1111 123566663322111 1122233 2 4
Q ss_pred CCcEEEEeCCChh-H-HHHHHHHHH
Q 022540 246 QKDTYVMCHHGMR-S-LQVAQWLQT 268 (295)
Q Consensus 246 ~~~ivv~C~~g~r-s-~~aa~~L~~ 268 (295)
.+||++||.+|.+ + ..+|.+|..
T Consensus 341 pkPVLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 341 KKPIYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred CCCEEEECCCCCchHHHHHHHHHHH
Confidence 6899999999984 3 466777753
No 118
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=51.51 E-value=24 Score=27.09 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=27.6
Q ss_pred CcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccccHhh
Q 022540 247 KDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHA 283 (295)
Q Consensus 247 ~~ivv~C~~-g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 283 (295)
+.|+|+|.+ -.||.+|..+|+.++-.++.+...|...
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~ 38 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEV 38 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCC
Confidence 368999974 4689999999988764567777777653
No 119
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=50.12 E-value=8.5 Score=33.33 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=21.4
Q ss_pred CCCCcEEEEeCCC-hhHH-HHHHHHHHcCCC
Q 022540 244 DPQKDTYVMCHHG-MRSL-QVAQWLQTQGFR 272 (295)
Q Consensus 244 ~~~~~ivv~C~~g-~rs~-~aa~~L~~~G~~ 272 (295)
..+.+|+|+|..| +|+. .++.+|...|++
T Consensus 168 ~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 168 KNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4678999999977 5664 566777777764
No 120
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=49.74 E-value=20 Score=26.73 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=23.1
Q ss_pred cEEEEeCCChhHHHHHHHHH----HcCCCceEEccccHh
Q 022540 248 DTYVMCHHGMRSLQVAQWLQ----TQGFRRVFNVSGGIH 282 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~----~~G~~~v~~l~GG~~ 282 (295)
.|++.|.+|..|..++..++ +.|++ +.+-..+..
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~ 40 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITAT 40 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHH
Confidence 58999999998877776664 46774 444444443
No 121
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=48.75 E-value=26 Score=27.68 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=29.0
Q ss_pred CcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccccHhhcc
Q 022540 247 KDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 247 ~~ivv~C~~-g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
+.|+|+|.+ -.||..|...|+... .++.+...|..+|.
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~~~~ 41 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVHGLV 41 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccccCCC
Confidence 479999974 468999999998765 34677888887773
No 122
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=47.92 E-value=24 Score=33.57 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCCCcEEEEeCCChhHHHHHHHHHH-c----CCCceEEccccHhhcc
Q 022540 244 DPQKDTYVMCHHGMRSLQVAQWLQT-Q----GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 244 ~~~~~ivv~C~~g~rs~~aa~~L~~-~----G~~~v~~l~GG~~~W~ 285 (295)
+.+...+++|++|..+..+|..|.+ . |-..|....||+++|.
T Consensus 131 p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 131 PGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred CCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 3333567889999998877777654 2 6556888999999986
No 123
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=47.63 E-value=23 Score=27.64 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=28.6
Q ss_pred cEEEEeCC-ChhHHHHHHHHHHcCCC-ceEEccccHhhc
Q 022540 248 DTYVMCHH-GMRSLQVAQWLQTQGFR-RVFNVSGGIHAY 284 (295)
Q Consensus 248 ~ivv~C~~-g~rs~~aa~~L~~~G~~-~v~~l~GG~~~W 284 (295)
.|+|+|.+ -.||..|..+|+...-. ++.+...|...+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 58999974 46899999999876533 688888888765
No 124
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=46.67 E-value=22 Score=28.82 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=19.3
Q ss_pred CCCcEEEEeCCC-hhHHHHHHHHHH-cCCC
Q 022540 245 PQKDTYVMCHHG-MRSLQVAQWLQT-QGFR 272 (295)
Q Consensus 245 ~~~~ivv~C~~g-~rs~~aa~~L~~-~G~~ 272 (295)
...||+|+|..| .|...+...||+ +|++
T Consensus 90 ~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~ 119 (164)
T PF03162_consen 90 RNYPVLIHCNHGKDRTGLVVGCLRKLQGWS 119 (164)
T ss_dssp GG-SEEEE-SSSSSHHHHHHHHHHHHTTB-
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHcCCC
Confidence 567999999877 578888888876 5654
No 125
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=46.12 E-value=23 Score=29.14 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=18.3
Q ss_pred CCCCCcEEEEeCCC-hhHHHH-HH-HHHHcCC
Q 022540 243 FDPQKDTYVMCHHG-MRSLQV-AQ-WLQTQGF 271 (295)
Q Consensus 243 ~~~~~~ivv~C~~g-~rs~~a-a~-~L~~~G~ 271 (295)
+.+.++|+|+|..| .||..+ +. .|...|.
T Consensus 102 ~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 102 LSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 35677999999987 576533 33 4444343
No 126
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=45.29 E-value=26 Score=25.57 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=22.0
Q ss_pred cEEEEeCCChhHHHHHHHHH----HcCCCceEEccccH
Q 022540 248 DTYVMCHHGMRSLQVAQWLQ----TQGFRRVFNVSGGI 281 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~----~~G~~~v~~l~GG~ 281 (295)
.|++.|.+|..|..++..++ +.|++ +.+-..++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~ 37 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPE 37 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecH
Confidence 37899999998877776654 46774 44444443
No 127
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=45.19 E-value=25 Score=26.05 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=24.2
Q ss_pred cEEEEeCCChhHHHHHHHHH----HcCCCceEEccccHhh
Q 022540 248 DTYVMCHHGMRSLQVAQWLQ----TQGFRRVFNVSGGIHA 283 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~----~~G~~~v~~l~GG~~~ 283 (295)
.|++.|.+|..|..++..++ +.|++ +.+...+...
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e 40 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGS 40 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHH
Confidence 48899999988888777664 46774 5555555443
No 128
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=44.97 E-value=34 Score=29.82 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=23.7
Q ss_pred CcEEEEeCCC---hhHHHHHHHHHHcCCCceEEc
Q 022540 247 KDTYVMCHHG---MRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 247 ~~ivv~C~~g---~rs~~aa~~L~~~G~~~v~~l 277 (295)
++|+|+|..| ...-.+|++|...||+ |.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 5799999755 5678999999999995 5544
No 129
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=44.85 E-value=29 Score=28.22 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=18.5
Q ss_pred CCCCcEEEEeCCC-hhHHH-HHHHHHHcC
Q 022540 244 DPQKDTYVMCHHG-MRSLQ-VAQWLQTQG 270 (295)
Q Consensus 244 ~~~~~ivv~C~~g-~rs~~-aa~~L~~~G 270 (295)
..+.+|+|+|..| +||.. ++..|.+.|
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4588999999987 57654 455555444
No 130
>PRK13696 hypothetical protein; Provisional
Probab=44.23 E-value=32 Score=23.07 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=22.5
Q ss_pred eeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhC
Q 022540 93 QHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHS 126 (295)
Q Consensus 93 ~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S 126 (295)
.+|.++.++.+++. ..+.|+||.++.+++-
T Consensus 4 K~ItI~dd~Y~~L~----~kk~~~SFSevi~~L~ 33 (62)
T PRK13696 4 KTITISDDVYEKLL----EIKGDKSFSEVIRELI 33 (62)
T ss_pred ceEEeCHHHHHHHH----HHhCCCCHHHHHHHHH
Confidence 46777777664444 5668889999999887
No 131
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=44.23 E-value=26 Score=28.64 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCc
Q 022540 105 LSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~ 146 (295)
=..+.+++++|..|.++..+++.-+ -..+.|.+|.++.+.+.
T Consensus 109 P~~v~~~vl~G~ElG~v~~~~~g~~~ig~~~GaIG~lT~g~lt 151 (175)
T COG1986 109 PPRVLEEVLQGKELGEVMEEYTGIDEIGRKEGAIGVLTNGKLT 151 (175)
T ss_pred CHHHHHHHHccccHHHHHHHHcCCCCcCcccceEEEeeCCeee
Confidence 4568888999999999999999866 78889999999998875
No 132
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=44.21 E-value=28 Score=24.55 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=17.2
Q ss_pred cEEEEeCCChhHHHHH-HHH----HHcCCC
Q 022540 248 DTYVMCHHGMRSLQVA-QWL----QTQGFR 272 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa-~~L----~~~G~~ 272 (295)
+|++.|.+|..+..++ ..| .+.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 4789999997655444 554 457864
No 133
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.39 E-value=31 Score=32.15 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=31.0
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 282 (295)
.+.+++|+|+++..+...+..|+..||. ...|.|-+.
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqms 335 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMS 335 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhh
Confidence 4589999999999999999999999995 556666443
No 134
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=41.92 E-value=32 Score=33.35 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=31.5
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccH
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 281 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 281 (295)
-+.|++|+.|.-..+...|..|.++|| +++.|.||-
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 467899999988888999999999998 599999874
No 135
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=41.67 E-value=29 Score=33.33 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=31.2
Q ss_pred cEEEEeCCChhHHHHHHHHHHc--CCCceEEccccHhhccc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~~ 286 (295)
.-+.+|++|..+..+|..|.+. |-+.|....||+++|..
T Consensus 156 ~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~ 196 (474)
T PLN02482 156 EMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHAD 196 (474)
T ss_pred CEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcc
Confidence 4578899999998888887653 65668888999999973
No 136
>PRK03941 NTPase; Reviewed
Probab=41.41 E-value=33 Score=28.22 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCc
Q 022540 105 LSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~ 146 (295)
-..+.++|++|.-+.++..++.... .+.++|-+|.++.+.+.
T Consensus 108 P~~v~~~i~~G~ELg~vmd~~~g~~ni~~~~GaIG~LT~g~vt 150 (174)
T PRK03941 108 PPLVVEEVLKGKEVGDVMSELTGIKELGRKIGAIGFLSRGMLD 150 (174)
T ss_pred CHHHHHHHHcCCCHHHHHHHHhCCCCcCcCCceEEEecCCcee
Confidence 3567888889999999999988766 88999999999998875
No 137
>TIGR00258 inosine/xanthosine triphosphatase.
Probab=41.40 E-value=34 Score=27.81 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCc
Q 022540 105 LSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~ 146 (295)
-..+.+.|++|.-+.++..++.... .+.++|-+|.++.+.+.
T Consensus 103 P~~v~~~i~~G~ELg~vmd~~~g~~~i~~~~GaIG~LT~g~v~ 145 (163)
T TIGR00258 103 PKVVVEKVLEGEEVGPVMEEYTGIDEIGRKEGAIGYLTAGKLT 145 (163)
T ss_pred CHHHHHHHHcCCcHHHHHHHHhCCCCcCCCCceEEEecCCccc
Confidence 3567888889999999999988866 88999999999998875
No 138
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=40.90 E-value=39 Score=24.55 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=20.5
Q ss_pred cEEEEeCCChh-HHHHHHH----HHHcCCCceEEccccHh
Q 022540 248 DTYVMCHHGMR-SLQVAQW----LQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 248 ~ivv~C~~g~r-s~~aa~~----L~~~G~~~v~~l~GG~~ 282 (295)
.|++.|++|.- |..++.. |.+.|++ +-+....+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~ 42 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVN 42 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHH
Confidence 58999999984 4444444 4557874 433333333
No 139
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=40.46 E-value=34 Score=32.57 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=30.1
Q ss_pred EEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhccc
Q 022540 249 TYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 249 ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~~ 286 (295)
-+++|++|..+..+|..|.+ -|-+.|..+.||+++|..
T Consensus 117 ~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 156 (451)
T PRK06918 117 KVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTL 156 (451)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccch
Confidence 58899999998888777755 354568888999999863
No 140
>PRK07046 aminotransferase; Validated
Probab=38.81 E-value=32 Score=32.78 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=29.9
Q ss_pred EEEEeCCChhHHHHHHHHHHc--CCCceEEccccHhhcc
Q 022540 249 TYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 249 ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~ 285 (295)
-+.+|++|..+..+|..|.+. |-+.|....||+++|.
T Consensus 132 ~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~ 170 (453)
T PRK07046 132 YWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTV 170 (453)
T ss_pred EEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCc
Confidence 468899999998888777653 6566888899999994
No 141
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=38.55 E-value=39 Score=22.92 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=15.0
Q ss_pred cEEEEeCCC-hhHHHHHHHHHH
Q 022540 248 DTYVMCHHG-MRSLQVAQWLQT 268 (295)
Q Consensus 248 ~ivv~C~~g-~rs~~aa~~L~~ 268 (295)
.++++|++| ..|..++..|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHH
Confidence 378999998 456666666654
No 142
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=38.36 E-value=47 Score=31.85 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=23.6
Q ss_pred CcEEEEeCCCh---hHHHHHHHHHHcCCCceEEc
Q 022540 247 KDTYVMCHHGM---RSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 247 ~~ivv~C~~g~---rs~~aa~~L~~~G~~~v~~l 277 (295)
++|+|+|..|+ ..-.+|.+|...||+ |.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 67999998765 567899999999996 5533
No 143
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=38.17 E-value=45 Score=31.48 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhccc
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~~ 286 (295)
....-+++|++|..+..+|..|.+ .|-+.|..++||+++|..
T Consensus 101 ~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 144 (433)
T PRK08117 101 GGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTL 144 (433)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCH
Confidence 444568889999998887777754 365668899999999864
No 144
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=38.12 E-value=37 Score=27.31 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=32.3
Q ss_pred cccCCCCCcEEEEeCCCh--hHHHHHHHHHH---cCCCceEEccccHhhcccc
Q 022540 240 TVKFDPQKDTYVMCHHGM--RSLQVAQWLQT---QGFRRVFNVSGGIHAYATK 287 (295)
Q Consensus 240 ~~~~~~~~~ivv~C~~g~--rs~~aa~~L~~---~G~~~v~~l~GG~~~W~~~ 287 (295)
+..++++..+|+.+..|. .|...|.+|.+ .|..++..+.||-.|+..+
T Consensus 61 l~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~ 113 (155)
T PF02590_consen 61 LKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGLSEE 113 (155)
T ss_dssp HCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--HH
T ss_pred HhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCCCHH
Confidence 445567788888888774 58888888866 6888899999998776543
No 145
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=38.05 E-value=42 Score=25.08 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=19.5
Q ss_pred CcEEEEeCCChhHHHHHHHH----HHcCCC
Q 022540 247 KDTYVMCHHGMRSLQVAQWL----QTQGFR 272 (295)
Q Consensus 247 ~~ivv~C~~g~rs~~aa~~L----~~~G~~ 272 (295)
+.|+++|.+|..|...+..+ ++.|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 47999999999888777554 345654
No 146
>PRK13530 arsenate reductase; Provisional
Probab=37.92 E-value=54 Score=25.48 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=26.5
Q ss_pred CcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccccHh
Q 022540 247 KDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 247 ~~ivv~C~~-g~rs~~aa~~L~~~G~~~v~~l~GG~~ 282 (295)
+.|+|+|.+ -.||..|..+++..+-.++.+...|..
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 479999974 468888888887754346777777764
No 147
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.63 E-value=36 Score=31.97 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=27.8
Q ss_pred cEEEEeCC---Ch-------hHHHHHHHHHHcCCCceEEccccHhhcccc
Q 022540 248 DTYVMCHH---GM-------RSLQVAQWLQTQGFRRVFNVSGGIHAYATK 287 (295)
Q Consensus 248 ~ivv~C~~---g~-------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 287 (295)
|+.+||.- |. -.......|++.|++ +.+|.||+++|...
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~-~ivLigd~ta~IgD 80 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHK-PIVLIGDATAMIGD 80 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCe-EEEEecccceecCC
Confidence 88888853 31 123445667889985 99999999999743
No 148
>PRK07481 hypothetical protein; Provisional
Probab=37.23 E-value=36 Score=32.41 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=29.5
Q ss_pred cEEEEeCCChhHHHHHHHHHHc--------CCCceEEccccHhhccc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQ--------GFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~W~~ 286 (295)
.-+++|++|..+..+|..|.+. |-+.|..+.||+++|..
T Consensus 105 ~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 151 (449)
T PRK07481 105 RRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHF 151 (449)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcch
Confidence 4678899999988777776542 33458899999999964
No 149
>PRK05074 inosine/xanthosine triphosphatase; Reviewed
Probab=37.13 E-value=42 Score=27.56 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCc
Q 022540 105 LSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~ 146 (295)
-..+.++|++|.-+.++..++.... .+.++|-+|.++.+.+.
T Consensus 108 P~~v~~~i~~G~ELg~vmd~~~g~~~i~~~~GaIG~LT~g~vt 150 (173)
T PRK05074 108 PAVVLEALRQGEELGDVMDRLFGTDNIKQKGGAIGLLTAGKLT 150 (173)
T ss_pred CHHHHHHHHcCCCHHHHHHHHhCCCCcCCCCceEEEecCCcee
Confidence 3567788889999999999988765 88999999999998875
No 150
>PRK06148 hypothetical protein; Provisional
Probab=36.96 E-value=43 Score=35.52 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=33.6
Q ss_pred CCCCcEEEEeCCChhHHHHHHHHHHc--CCCceEEccccHhhccc
Q 022540 244 DPQKDTYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 244 ~~~~~ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~~ 286 (295)
+.+-..+++|++|..+..+|..|.+. |-+.|..+.||+++|..
T Consensus 677 p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~ 721 (1013)
T PRK06148 677 PDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTT 721 (1013)
T ss_pred CCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCc
Confidence 33345789999999998888877663 65678899999999964
No 151
>PRK06917 hypothetical protein; Provisional
Probab=36.94 E-value=49 Score=31.46 Aligned_cols=43 Identities=9% Similarity=0.129 Sum_probs=31.1
Q ss_pred CCCCcEEEEeCCChhHHHHHHHHHH-----cCC---CceEEccccHhhccc
Q 022540 244 DPQKDTYVMCHHGMRSLQVAQWLQT-----QGF---RRVFNVSGGIHAYAT 286 (295)
Q Consensus 244 ~~~~~ivv~C~~g~rs~~aa~~L~~-----~G~---~~v~~l~GG~~~W~~ 286 (295)
+.....+++|++|..+..+|-.|.+ .|+ +.|..+.||+++|..
T Consensus 88 p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~ 138 (447)
T PRK06917 88 PGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITM 138 (447)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccH
Confidence 3333468899999998887777753 243 358888999999963
No 152
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=36.40 E-value=41 Score=31.93 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=29.9
Q ss_pred cEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+ .|-+.|..+.||+++|.
T Consensus 116 ~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 116 KKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRT 155 (441)
T ss_pred CEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCcc
Confidence 468889999998877777654 35556888899999987
No 153
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=36.13 E-value=44 Score=23.68 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=15.8
Q ss_pred cEEEEeCCChhHH-HHHHHH----HHcCCC
Q 022540 248 DTYVMCHHGMRSL-QVAQWL----QTQGFR 272 (295)
Q Consensus 248 ~ivv~C~~g~rs~-~aa~~L----~~~G~~ 272 (295)
.|+++|++|.-++ .++..+ .+.|..
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~ 31 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLE 31 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 5899999987554 434444 445653
No 154
>PRK03114 NTPase; Reviewed
Probab=36.00 E-value=45 Score=27.29 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCc
Q 022540 105 LSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~ 146 (295)
-..+.+.|.+|.-+.++..++.... .+.++|-+|.++.+.+.
T Consensus 104 P~~v~~~i~~G~ELG~vmd~~~g~~ni~~~~GaIG~LT~g~vt 146 (169)
T PRK03114 104 PDDFLAPLEAGKELSEVMEEYVQRKDIRSHEGAIGIFTDGYVD 146 (169)
T ss_pred CHHHHHHHHcCCCHHHHHHHHhCCCCcCCCCceEEEecCCcee
Confidence 3567778889999999999988766 88999999999998875
No 155
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=35.86 E-value=40 Score=31.98 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=30.0
Q ss_pred cEEEEeCCChhHHHHHHHHHHc--CCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+. |-+.|....||+++|.
T Consensus 111 ~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 111 HKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHA 150 (433)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCC
Confidence 3578899999998887777653 5556888899999987
No 156
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=35.60 E-value=59 Score=20.10 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCC-CcHHHHHHHhCCCC
Q 022540 104 LLSELQRRVSQG-EDLSDLAVEHSICP 129 (295)
Q Consensus 104 ~a~~~~~~i~~g-~~F~~~a~~~S~~~ 129 (295)
.+..+.+.+++| .++.++|++|....
T Consensus 4 ~l~~Ai~~v~~g~~S~r~AA~~ygVp~ 30 (45)
T PF05225_consen 4 DLQKAIEAVKNGKMSIRKAAKKYGVPR 30 (45)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHT--H
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCcCH
Confidence 467778888888 59999999997654
No 157
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=35.56 E-value=48 Score=31.13 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=29.6
Q ss_pred cEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+ -|-+.|....||+++|.
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 134 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRT 134 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCc
Confidence 357888999998888777755 35556888899999986
No 158
>PRK07678 aminotransferase; Validated
Probab=35.04 E-value=42 Score=31.94 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=28.5
Q ss_pred EEEEeCCChhHHHHHHHHHHc--------CCCceEEccccHhhccc
Q 022540 249 TYVMCHHGMRSLQVAQWLQTQ--------GFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 249 ivv~C~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~W~~ 286 (295)
-+++|++|..+..+|..|.+. |-+.|..+.||+++|..
T Consensus 107 ~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~ 152 (451)
T PRK07678 107 VIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSM 152 (451)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccH
Confidence 578899999988777766542 33458888999999863
No 159
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=34.81 E-value=44 Score=31.43 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=28.5
Q ss_pred EEEEeCCChhHHHHHHHHHHc--CCCceEEccccHhhcc
Q 022540 249 TYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 249 ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~ 285 (295)
-+++|++|..+..+|..|.+. |-+.|..+.||+++|.
T Consensus 103 ~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK09792 103 KTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRT 141 (421)
T ss_pred eEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 467777999988877777652 5456888999999985
No 160
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=34.75 E-value=59 Score=31.86 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=23.6
Q ss_pred CcEEEEeCCCh---hHHHHHHHHHHcCCCceEEc
Q 022540 247 KDTYVMCHHGM---RSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 247 ~~ivv~C~~g~---rs~~aa~~L~~~G~~~v~~l 277 (295)
++|+|+|..|+ ..-.+|.+|...||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 57999998765 567889999999995 5543
No 161
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=34.65 E-value=44 Score=31.76 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=29.8
Q ss_pred cEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~ 285 (295)
.-|++|++|..+..+|..|.+ -|-+.|..++||+++|.
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t 143 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 357889999998888777755 35456888999999985
No 162
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=34.59 E-value=61 Score=25.48 Aligned_cols=38 Identities=18% Similarity=0.075 Sum_probs=29.7
Q ss_pred CcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccccHhhc
Q 022540 247 KDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284 (295)
Q Consensus 247 ~~ivv~C~~-g~rs~~aa~~L~~~G~~~v~~l~GG~~~W 284 (295)
..|+|+|.+ -.||.+|-.+++...-.++.+...|..++
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~~ 41 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGGH 41 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCCC
Confidence 478999974 46899999999886546788888887654
No 163
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=34.59 E-value=44 Score=23.78 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=12.7
Q ss_pred CCcEEEEeCCC-hhHHHH
Q 022540 246 QKDTYVMCHHG-MRSLQV 262 (295)
Q Consensus 246 ~~~ivv~C~~g-~rs~~a 262 (295)
..||+|+|..| .|+..+
T Consensus 39 ~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCCEEEEeCCCCChhhHH
Confidence 67999999976 466533
No 164
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=34.59 E-value=44 Score=23.78 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=12.7
Q ss_pred CCcEEEEeCCC-hhHHHH
Q 022540 246 QKDTYVMCHHG-MRSLQV 262 (295)
Q Consensus 246 ~~~ivv~C~~g-~rs~~a 262 (295)
..||+|+|..| .|+..+
T Consensus 39 ~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCCEEEEeCCCCChhhHH
Confidence 67999999976 466533
No 165
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=34.14 E-value=45 Score=31.49 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=29.7
Q ss_pred cEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+ -|-+.|....||+++|.
T Consensus 102 ~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (425)
T PRK07495 102 KKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRT 141 (425)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCcc
Confidence 357889999998888777755 35556888899999985
No 166
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=33.42 E-value=52 Score=25.41 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=23.9
Q ss_pred EEEEeCC-ChhHHHHHHHHHHcCCCceEEccccHhh
Q 022540 249 TYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHA 283 (295)
Q Consensus 249 ivv~C~~-g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 283 (295)
|+|+|.+ -.||.+|..+|+...=.++.+...|..+
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~~ 36 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIEA 36 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 5788864 4578888888877532467777777753
No 167
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=32.97 E-value=74 Score=26.88 Aligned_cols=31 Identities=26% Similarity=0.489 Sum_probs=24.4
Q ss_pred CCcEEEEeCCCh---hHHHHHHHHHHcCCCceEEc
Q 022540 246 QKDTYVMCHHGM---RSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 246 ~~~ivv~C~~g~---rs~~aa~~L~~~G~~~v~~l 277 (295)
...|+|+|.+|+ ....+|++|...|+. |.++
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 568999998665 578999999999975 5533
No 168
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=32.88 E-value=50 Score=31.54 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=30.1
Q ss_pred cEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhccc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~~ 286 (295)
.-+++|++|..+..+|..|.+ -|-+.|....||+++|..
T Consensus 114 ~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 154 (457)
T PRK05639 114 PKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTL 154 (457)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccH
Confidence 457889999998888777755 354568888999999873
No 169
>PRK06062 hypothetical protein; Provisional
Probab=32.60 E-value=48 Score=31.59 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=29.8
Q ss_pred cEEEEeCCChhHHHHHHHHHHc--CCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+. |-+.|....||+++|.
T Consensus 113 ~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 152 (451)
T PRK06062 113 SKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGT 152 (451)
T ss_pred CEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCC
Confidence 4578899999988887777553 5556888999999996
No 170
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=32.52 E-value=54 Score=30.86 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=28.5
Q ss_pred EEEEeCCChhHHHHHHHHHHc--CCCceEEccccHhhcc
Q 022540 249 TYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 249 ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~ 285 (295)
-+++|++|..+..+|..|.+. |-+.|....||+++|.
T Consensus 103 ~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK06777 103 KTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRT 141 (421)
T ss_pred eEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCcc
Confidence 467788999988877777553 5456888899999986
No 171
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=32.40 E-value=57 Score=30.61 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=29.4
Q ss_pred cEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~ 285 (295)
.++++|++|..+..+|..|.+ -|-+.|..+.||+++|.
T Consensus 100 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 139 (412)
T TIGR02407 100 KVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMT 139 (412)
T ss_pred eEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCch
Confidence 466778999998888777755 25456888899999996
No 172
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=31.47 E-value=62 Score=30.93 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=29.8
Q ss_pred cEEEEeCCChhHHHHHHHHHHc-----CC---CceEEccccHhhccc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQ-----GF---RRVFNVSGGIHAYAT 286 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~-----G~---~~v~~l~GG~~~W~~ 286 (295)
.-+++|++|..+..+|..|.+. |+ +.|..+.||+++|..
T Consensus 117 ~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~ 163 (460)
T PRK06916 117 KKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTI 163 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccH
Confidence 4689999999988777776553 43 358889999999863
No 173
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=31.35 E-value=54 Score=30.82 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=28.4
Q ss_pred cEEEEeCCChhHHHHHHHHHHc--------CCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQ--------GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+. |-++|..+.||+++|.
T Consensus 103 ~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t 148 (423)
T PRK05964 103 DHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDT 148 (423)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 3577899999988777766442 3346888999999986
No 174
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=31.06 E-value=62 Score=30.94 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCCCcEEEEeCCChhHHHHHHHHHHc-----CCCceEEccccHhhccc
Q 022540 244 DPQKDTYVMCHHGMRSLQVAQWLQTQ-----GFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 244 ~~~~~ivv~C~~g~rs~~aa~~L~~~-----G~~~v~~l~GG~~~W~~ 286 (295)
+.+-..+++|++|..+..+|..|.+. |-..|....||+++|..
T Consensus 138 p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~ 185 (459)
T PRK11522 138 PGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSL 185 (459)
T ss_pred CCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcH
Confidence 33334678899999988777776542 33357788999999963
No 175
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=30.88 E-value=78 Score=23.37 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=27.6
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccH
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 281 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 281 (295)
.+.+++|+|.+-..+..++..|.+.+. .+..+.|+.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 567889999987778888888887665 477777764
No 176
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.43 E-value=73 Score=23.35 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=22.9
Q ss_pred CCCCcEEEEeCCChhH-HHHHHHHHHcCCC
Q 022540 244 DPQKDTYVMCHHGMRS-LQVAQWLQTQGFR 272 (295)
Q Consensus 244 ~~~~~ivv~C~~g~rs-~~aa~~L~~~G~~ 272 (295)
..+++++++.|++.++ ...+..|+.+|++
T Consensus 28 ~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 28 ERGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HTTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HcCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 3578999999988777 7888899999986
No 177
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=30.24 E-value=61 Score=30.52 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=28.9
Q ss_pred cEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhccc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~~ 286 (295)
.++++|++|..+..+|..|.+ -|-+.|....||+++|.-
T Consensus 104 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 144 (425)
T PRK09264 104 KVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTL 144 (425)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccH
Confidence 456667899998887777755 254568888999999863
No 178
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=29.79 E-value=33 Score=30.02 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=29.6
Q ss_pred cCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEE
Q 022540 242 KFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFN 276 (295)
Q Consensus 242 ~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~ 276 (295)
.+.++..++|||..-....+....|++.||.++..
T Consensus 184 ~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 184 ALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred HhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence 35678899999998888999999999999987543
No 179
>PRK08297 L-lysine aminotransferase; Provisional
Probab=29.54 E-value=81 Score=29.96 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=30.4
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHH---------cCC-----CceEEccccHhhcc
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQT---------QGF-----RRVFNVSGGIHAYA 285 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~---------~G~-----~~v~~l~GG~~~W~ 285 (295)
.+-.-+++|++|..+..+|..|.+ .|. +.|..+.||+++|.
T Consensus 108 ~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t 162 (443)
T PRK08297 108 PELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRS 162 (443)
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcc
Confidence 333568889999998877777653 354 35888999999986
No 180
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=29.43 E-value=71 Score=30.33 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=28.9
Q ss_pred CcEEEEeCCChhHHHHHHHHHHc--------CCCceEEccccHhhcc
Q 022540 247 KDTYVMCHHGMRSLQVAQWLQTQ--------GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 247 ~~ivv~C~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~W~ 285 (295)
-.-+++|++|..+..+|..|.+. |-++|..+.||+++|.
T Consensus 106 ~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 152 (442)
T PRK13360 106 LNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVG 152 (442)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 34678899999988777666442 2346888999999985
No 181
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=29.26 E-value=94 Score=26.11 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=24.8
Q ss_pred CCCCCcEEEEeCCC---hhHHHHHHHHHHcCCCceEEc
Q 022540 243 FDPQKDTYVMCHHG---MRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 243 ~~~~~~ivv~C~~g---~rs~~aa~~L~~~G~~~v~~l 277 (295)
+++.++|+|+|..| .....+|++|...|+. |+.+
T Consensus 42 ~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 42 FPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred cCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 34557899999765 4677889999887763 6654
No 182
>PRK10565 putative carbohydrate kinase; Provisional
Probab=29.17 E-value=80 Score=30.69 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=25.2
Q ss_pred CCCCCcEEEEeCCCh---hHHHHHHHHHHcCCCceEEc
Q 022540 243 FDPQKDTYVMCHHGM---RSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 243 ~~~~~~ivv~C~~g~---rs~~aa~~L~~~G~~~v~~l 277 (295)
++...+|+|+|..|+ ....+|++|...||+ |.++
T Consensus 57 ~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 57 YPDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred cCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 344567999997654 577889999999985 5543
No 183
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=28.91 E-value=59 Score=30.68 Aligned_cols=38 Identities=11% Similarity=0.267 Sum_probs=29.7
Q ss_pred cEEEEeCCChhHHHHHHHHHHc--CCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQ--GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+. |-+.|..+.||+++|.
T Consensus 110 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 149 (428)
T PRK12389 110 EKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHS 149 (428)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCh
Confidence 3577799999988887777553 5556888899999986
No 184
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=28.78 E-value=82 Score=22.99 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=18.9
Q ss_pred CcEEEEeCCChhHHHH-----HHHHHHcCCC
Q 022540 247 KDTYVMCHHGMRSLQV-----AQWLQTQGFR 272 (295)
Q Consensus 247 ~~ivv~C~~g~rs~~a-----a~~L~~~G~~ 272 (295)
.+|++.|.+|.-|..+ -..|+++|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 4689999999765433 3457889985
No 185
>PF01931 NTPase_I-T: Protein of unknown function DUF84; InterPro: IPR002786 This is a family of prokaryotic proteins of unknown function.; PDB: 1U5W_E 1ZNO_B 1ZWY_D 1U14_A.
Probab=28.56 E-value=51 Score=26.94 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCc
Q 022540 105 LSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~ 146 (295)
=..+.+.|++|.-..++..++.... .+.++|.+|.++.+.+.
T Consensus 105 P~~v~~~i~~G~ELg~v~d~~~g~~~i~~~~GaiG~LT~g~v~ 147 (168)
T PF01931_consen 105 PPEVAEEILEGKELGEVMDELFGRKNIGQKEGAIGILTNGRVT 147 (168)
T ss_dssp -HHHHHHHTTT--HHHHHHHHHTHTTGGGTTHHHHHHTTTSS-
T ss_pred CHHHHHHHHcCCCHHHHHHHHhCCCCcccCCceEEEecCCccc
Confidence 3567788889999999999998866 88899999999999875
No 186
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=28.53 E-value=53 Score=22.41 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=23.7
Q ss_pred ccccCCCCCcEEEEeCCChhHHHHHHHHHH
Q 022540 239 ITVKFDPQKDTYVMCHHGMRSLQVAQWLQT 268 (295)
Q Consensus 239 ~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~ 268 (295)
.+..+..|..|+++|+++..+......|++
T Consensus 40 I~GtIAgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 40 IFGTIAGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EEEEEEESSEEEEEESTTSHHHHHHHHHHT
T ss_pred cEEEEeCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 344456788999999999988888887765
No 187
>PRK05965 hypothetical protein; Provisional
Probab=28.48 E-value=79 Score=30.18 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=30.0
Q ss_pred CCCCcEEEEeCCChhHHHHHHHHHH-c----C---CCceEEccccHhhcc
Q 022540 244 DPQKDTYVMCHHGMRSLQVAQWLQT-Q----G---FRRVFNVSGGIHAYA 285 (295)
Q Consensus 244 ~~~~~ivv~C~~g~rs~~aa~~L~~-~----G---~~~v~~l~GG~~~W~ 285 (295)
+.+-.-+++|++|..+..+|..|.+ . | -+.|..+.|||++|.
T Consensus 104 p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t 153 (459)
T PRK05965 104 PGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSS 153 (459)
T ss_pred CCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCccc
Confidence 3344468889999988877766643 2 4 335888999999996
No 188
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=28.36 E-value=78 Score=29.95 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=28.8
Q ss_pred cEEEEeCCChhHHHHHHHHHHc-------CCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQ-------GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~-------G~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+. |-++|..+.||+++|.
T Consensus 104 ~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t 148 (428)
T PRK07986 104 ECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDT 148 (428)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCc
Confidence 4688899999988777666442 3346888999999876
No 189
>PRK06541 hypothetical protein; Provisional
Probab=28.28 E-value=63 Score=30.90 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=29.0
Q ss_pred cEEEEeCCChhHHHHHHHHHHc-----C---CCceEEccccHhhccc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQ-----G---FRRVFNVSGGIHAYAT 286 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~W~~ 286 (295)
.-+++|++|..+..+|..|.+. | -..|..+.||+++|..
T Consensus 113 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 159 (460)
T PRK06541 113 NRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQ 159 (460)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcch
Confidence 3578899999988777776442 3 3458888999999863
No 190
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=28.25 E-value=92 Score=25.11 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=34.6
Q ss_pred cccCCCCCcEEEEeCCCh--hHHHHHHHHHH---cCCCceEEccccHhhcccc
Q 022540 240 TVKFDPQKDTYVMCHHGM--RSLQVAQWLQT---QGFRRVFNVSGGIHAYATK 287 (295)
Q Consensus 240 ~~~~~~~~~ivv~C~~g~--rs~~aa~~L~~---~G~~~v~~l~GG~~~W~~~ 287 (295)
+..++++.-+|+.|..|. .|...|..|.+ .|..++..+.||-.|+..+
T Consensus 61 l~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~ 113 (157)
T PRK00103 61 LAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPA 113 (157)
T ss_pred HhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHH
Confidence 344566666777777774 58888888865 4656799999998877554
No 191
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=27.97 E-value=73 Score=22.43 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=16.0
Q ss_pred cEEEEeCCChhHH-HHHHHHH----HcCC
Q 022540 248 DTYVMCHHGMRSL-QVAQWLQ----TQGF 271 (295)
Q Consensus 248 ~ivv~C~~g~rs~-~aa~~L~----~~G~ 271 (295)
.++++|.+|..+. ..+..|+ +.++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i 30 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGI 30 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 5899999997544 5555554 4565
No 192
>PRK07482 hypothetical protein; Provisional
Probab=27.80 E-value=83 Score=30.09 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=29.2
Q ss_pred CCcEEEEeCCChhHHHHHHHHHH-----cCC---CceEEccccHhhcc
Q 022540 246 QKDTYVMCHHGMRSLQVAQWLQT-----QGF---RRVFNVSGGIHAYA 285 (295)
Q Consensus 246 ~~~ivv~C~~g~rs~~aa~~L~~-----~G~---~~v~~l~GG~~~W~ 285 (295)
+-.-+++|++|..+..+|..|.+ .|. ++|..+.|||++|.
T Consensus 110 ~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t 157 (461)
T PRK07482 110 GMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSG 157 (461)
T ss_pred CcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCcc
Confidence 33457889999998877766654 253 34788899999985
No 193
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.73 E-value=76 Score=26.93 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=17.6
Q ss_pred HHHHcCCCceEEccc-cHhhcccc
Q 022540 265 WLQTQGFRRVFNVSG-GIHAYATK 287 (295)
Q Consensus 265 ~L~~~G~~~v~~l~G-G~~~W~~~ 287 (295)
.|..+||.||.+..| |..+|...
T Consensus 113 ~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 113 NLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHcCCCceEEEECCcccCCCCC
Confidence 377889999876654 88999763
No 194
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=27.62 E-value=74 Score=30.16 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=29.1
Q ss_pred cEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+ .|-+.|....||+++|.
T Consensus 118 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 157 (443)
T PRK06058 118 KRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRT 157 (443)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcCh
Confidence 357789999888777777654 35556888899999996
No 195
>PRK07483 hypothetical protein; Provisional
Probab=26.69 E-value=92 Score=29.59 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=27.9
Q ss_pred cEEEEeCCChhHHHHHHHHHH-c-------CCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT-Q-------GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~-~-------G~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|-.|.+ . |-++|....||+++|.
T Consensus 91 ~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t 136 (443)
T PRK07483 91 EHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNT 136 (443)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcC
Confidence 457889999988777666644 2 3335788899999996
No 196
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=26.66 E-value=80 Score=29.94 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=30.1
Q ss_pred CcEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhcc
Q 022540 247 KDTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 247 ~~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~ 285 (295)
..++++|++|..+..+|..|.+ -|-++|....||+++|.
T Consensus 102 ~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 142 (442)
T TIGR00709 102 YKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMT 142 (442)
T ss_pred ccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCch
Confidence 3567888999998887777755 25456888899999985
No 197
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=26.45 E-value=87 Score=29.76 Aligned_cols=38 Identities=8% Similarity=-0.036 Sum_probs=29.6
Q ss_pred cEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+ -|-+.|..+.||+++|.
T Consensus 102 ~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 141 (443)
T PRK08360 102 PKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGST 141 (443)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcC
Confidence 358889999998888777755 35556888889999986
No 198
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=26.38 E-value=83 Score=21.95 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=13.5
Q ss_pred cEEEEeCCChh-HHHHHHHHHH
Q 022540 248 DTYVMCHHGMR-SLQVAQWLQT 268 (295)
Q Consensus 248 ~ivv~C~~g~r-s~~aa~~L~~ 268 (295)
.++++|++|.- |......|++
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~ 22 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEK 22 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHH
Confidence 37899999874 4444545543
No 199
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=25.90 E-value=86 Score=30.03 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=27.5
Q ss_pred EEEe-CCChhHHHHHHHHHH--cCCCceEEccccHhhcc
Q 022540 250 YVMC-HHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 250 vv~C-~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~ 285 (295)
+++| ++|..+..+|..|.+ -|-+.|....||+++|.
T Consensus 129 v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t 167 (464)
T PRK06938 129 IQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMS 167 (464)
T ss_pred EEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCcc
Confidence 4555 799998887777755 36556888899999996
No 200
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=25.66 E-value=69 Score=24.07 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=22.3
Q ss_pred EEEeCCChhHHHHHHHHHHcCCCceEEcc
Q 022540 250 YVMCHHGMRSLQVAQWLQTQGFRRVFNVS 278 (295)
Q Consensus 250 vv~C~~g~rs~~aa~~L~~~G~~~v~~l~ 278 (295)
|+++++|.-+.++.+.++++|++-|.+..
T Consensus 5 vLIanrGeia~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 5 VLIANRGEIAVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp EEESS-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHhCCcceeccC
Confidence 56677788899999999999998665443
No 201
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=25.22 E-value=83 Score=30.00 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=28.6
Q ss_pred cEEEEeCCChhHHHHHHHHHH-----cCC---CceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT-----QGF---RRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~-----~G~---~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+ .|+ ++|..+.||+++|.
T Consensus 115 ~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t 160 (453)
T PRK06943 115 GHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGET 160 (453)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCc
Confidence 457889999998877766642 243 45888999999986
No 202
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=24.92 E-value=96 Score=29.71 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=28.4
Q ss_pred cEEEEeCCChhHHHHHHHHHH-----cCC---CceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT-----QGF---RRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~-----~G~---~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+ .|. +.|..+.||+++|.
T Consensus 108 ~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t 153 (466)
T PRK07030 108 SRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGET 153 (466)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCccc
Confidence 468889999998877766643 243 35888999999985
No 203
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=24.87 E-value=76 Score=29.76 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=28.3
Q ss_pred cEEEEeCCChhHHHHHHHHHHc-----CC----CceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQ-----GF----RRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~-----G~----~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+. |. +.|..+.||+++|.
T Consensus 99 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t 145 (408)
T PRK04612 99 EKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRT 145 (408)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCcc
Confidence 4688899999888777666442 42 24788899999986
No 204
>PRK06149 hypothetical protein; Provisional
Probab=24.73 E-value=92 Score=32.93 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=32.3
Q ss_pred CCCCcEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhcc
Q 022540 244 DPQKDTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 244 ~~~~~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~ 285 (295)
+.+..-+++|++|..+..+|..|.+ .|-+.|..+++|+++|.
T Consensus 638 p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 681 (972)
T PRK06149 638 PDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT 681 (972)
T ss_pred CCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcC
Confidence 3334578889999998888777654 46566889999999987
No 205
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=24.68 E-value=93 Score=23.15 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=16.9
Q ss_pred CcEEEEeCCChhHHHHHHHHHH
Q 022540 247 KDTYVMCHHGMRSLQVAQWLQT 268 (295)
Q Consensus 247 ~~ivv~C~~g~rs~~aa~~L~~ 268 (295)
+.|.++|+.|..+...+..+++
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~ 23 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKK 23 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 4689999999887777666654
No 206
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=24.11 E-value=86 Score=20.06 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=17.8
Q ss_pred HHHHHHhcCCCcHHHHHHHhCCCC
Q 022540 106 SELQRRVSQGEDLSDLAVEHSICP 129 (295)
Q Consensus 106 ~~~~~~i~~g~~F~~~a~~~S~~~ 129 (295)
-++.+.+..|.+..++|++|.-..
T Consensus 13 ~~iI~~~e~g~s~~~ia~~fgv~~ 36 (53)
T PF04218_consen 13 LEIIKRLEEGESKRDIAREFGVSR 36 (53)
T ss_dssp HHHHHHHHCTT-HHHHHHHHT--C
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCH
Confidence 356777889999999999997765
No 207
>PRK07036 hypothetical protein; Provisional
Probab=24.07 E-value=1.1e+02 Score=29.40 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=28.9
Q ss_pred CcEEEEeCCChhHHHHHHHHHH-c----C---CCceEEccccHhhcc
Q 022540 247 KDTYVMCHHGMRSLQVAQWLQT-Q----G---FRRVFNVSGGIHAYA 285 (295)
Q Consensus 247 ~~ivv~C~~g~rs~~aa~~L~~-~----G---~~~v~~l~GG~~~W~ 285 (295)
-.-+++|++|..+..+|..|.+ . | -+.|..+.||+++|.
T Consensus 112 ~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t 158 (466)
T PRK07036 112 LNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGST 158 (466)
T ss_pred cCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCcc
Confidence 3468889999988877766643 1 3 245888899999986
No 208
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=23.50 E-value=1.2e+02 Score=28.53 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=30.9
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 282 (295)
...+++|+|++-..+...+..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 4567999999988899999999999984 778888763
No 209
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=23.21 E-value=1e+02 Score=30.67 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=31.1
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 282 (295)
++...+|||++-..+...+..|...|+. +..+.||+.
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~-v~~~Ha~l~ 271 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGIS-AAAYHAGLD 271 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 5678999999988899999999999984 777778764
No 210
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=23.08 E-value=1.1e+02 Score=29.31 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=29.2
Q ss_pred cEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~ 285 (295)
.+++++++|..+..+|..|.+ -|-+.|....||+++|.
T Consensus 122 ~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t 161 (459)
T PRK06931 122 CLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMT 161 (459)
T ss_pred eEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 356666899998888777755 36566888999999996
No 211
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=22.97 E-value=56 Score=26.32 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=18.1
Q ss_pred ccCCCCCcEEEEeCCCh-hHHHHHHH
Q 022540 241 VKFDPQKDTYVMCHHGM-RSLQVAQW 265 (295)
Q Consensus 241 ~~~~~~~~ivv~C~~g~-rs~~aa~~ 265 (295)
...+...|++++|..|. ||..++..
T Consensus 88 ~~wp~~apllIHC~aGISRStA~A~i 113 (172)
T COG5350 88 DEWPRFAPLLIHCYAGISRSTAAALI 113 (172)
T ss_pred hcCccccceeeeeccccccchHHHHH
Confidence 34578899999999874 66655544
No 212
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=22.95 E-value=1e+02 Score=30.41 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 282 (295)
...+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~-v~~lhg~l~ 292 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYR-VGVLSGDVP 292 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCC-EEEEeCCCC
Confidence 4578999999988899999999999984 778877653
No 213
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=22.78 E-value=1.2e+02 Score=23.31 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=28.9
Q ss_pred EEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcc
Q 022540 250 YVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 250 vv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
|+++..|.-...++..|...|..++..+++..-.+.
T Consensus 5 v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~ 40 (135)
T PF00899_consen 5 VLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPS 40 (135)
T ss_dssp EEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GG
T ss_pred EEEECcCHHHHHHHHHHHHhCCCceeecCCcceeec
Confidence 556777888889999999999999999998766554
No 214
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=22.74 E-value=1.2e+02 Score=27.31 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.9
Q ss_pred CCCcEEEE---eCCChhHHHHHHHHHHcCCCceEEc
Q 022540 245 PQKDTYVM---CHHGMRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 245 ~~~~ivv~---C~~g~rs~~aa~~L~~~G~~~v~~l 277 (295)
+++.++++ |.+|..-..++..|++.|-.+|+.+
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 245 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCV 245 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 57788887 4688899999999999998877643
No 215
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.67 E-value=1.3e+02 Score=27.34 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=26.8
Q ss_pred CCCcEEEE---eCCChhHHHHHHHHHHcCCCceEE
Q 022540 245 PQKDTYVM---CHHGMRSLQVAQWLQTQGFRRVFN 276 (295)
Q Consensus 245 ~~~~ivv~---C~~g~rs~~aa~~L~~~G~~~v~~ 276 (295)
+++.++++ |.+|..-..++..|++.|-..|+.
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 250 (319)
T PRK04923 216 QGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVA 250 (319)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEE
Confidence 56788887 568899999999999999888763
No 216
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=22.64 E-value=1.2e+02 Score=21.60 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=25.4
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhc
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W 284 (295)
.+.||++ |+ ..-.......|...+.++|+++ ||-..-
T Consensus 49 ~~~PIll-~~-~~l~~~~~~~l~~~~~~~v~ii-Gg~~~i 85 (92)
T PF04122_consen 49 NNAPILL-VN-NSLPSSVKAFLKSLNIKKVYII-GGEGAI 85 (92)
T ss_pred cCCeEEE-EC-CCCCHHHHHHHHHcCCCEEEEE-CCCCcc
Confidence 4456555 44 4455777888888898888887 775543
No 217
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.23 E-value=1.1e+02 Score=29.35 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=30.3
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 282 (295)
+++..+|||++-..+..++..|...|+. +..+.||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 4567799999988899999999999985 667777754
No 218
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=22.18 E-value=1.1e+02 Score=29.26 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=30.0
Q ss_pred cEEEEeCCChhHHHHHHHHHH--cCCCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT--QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+ .|-++|..+.||+++|.
T Consensus 131 ~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t 170 (459)
T PRK06082 131 NRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGAS 170 (459)
T ss_pred CEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcc
Confidence 467889999998888777755 35456888899999986
No 219
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=22.12 E-value=1.5e+02 Score=24.71 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=25.5
Q ss_pred CCCcEEEE---eCCChhHHHHHHHHHHcCCCceEEc
Q 022540 245 PQKDTYVM---CHHGMRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 245 ~~~~ivv~---C~~g~rs~~aa~~L~~~G~~~v~~l 277 (295)
+++.++++ |.+|..-..++..|++.|-..||.+
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~ 117 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYAC 117 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEE
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEE
Confidence 45666666 4688888899999999998888754
No 220
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=21.83 E-value=72 Score=26.98 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=13.3
Q ss_pred CCCcEEEEeCCC-hhHHHH
Q 022540 245 PQKDTYVMCHHG-MRSLQV 262 (295)
Q Consensus 245 ~~~~ivv~C~~g-~rs~~a 262 (295)
...||+|+|..| +||..+
T Consensus 165 ~~~pivVHC~~G~gRsg~~ 183 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTF 183 (231)
T ss_pred CCCCeEEECCCCCCccchH
Confidence 467999999876 566543
No 221
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=21.79 E-value=1.1e+02 Score=28.97 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=30.0
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540 246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 246 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 282 (295)
..+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~-v~~~hg~~~ 277 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFS-ALALHGDLE 277 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 457899999988899999999999984 777777764
No 222
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=21.79 E-value=1e+02 Score=29.08 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=27.6
Q ss_pred cEEEEeCCChhHHHHHHHHHHc-----C---CCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQ-----G---FRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+. | -+.|..+.||+++|.
T Consensus 101 ~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 146 (422)
T PRK05630 101 DHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDT 146 (422)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcc
Confidence 3578899999988777666442 2 235788899999875
No 223
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=21.72 E-value=1.1e+02 Score=28.69 Aligned_cols=37 Identities=14% Similarity=0.332 Sum_probs=26.0
Q ss_pred CcEEEEeCCChhHHHHHHHHHH--cCC----Cc--eEEccccHhh
Q 022540 247 KDTYVMCHHGMRSLQVAQWLQT--QGF----RR--VFNVSGGIHA 283 (295)
Q Consensus 247 ~~ivv~C~~g~rs~~aa~~L~~--~G~----~~--v~~l~GG~~~ 283 (295)
-.-|++|++|..+-.+|..+.+ .+. ++ +..+.||+++
T Consensus 116 ~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG 160 (433)
T KOG1401|consen 116 AERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHG 160 (433)
T ss_pred ccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCC
Confidence 3458889999998877776643 222 23 7788888875
No 224
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=21.68 E-value=1.2e+02 Score=28.31 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=30.0
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540 246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 246 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 282 (295)
...++|+|++...+...+..|...|++ +..+.|++.
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~-v~~lhg~~~ 290 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHR-VGLLTGDVA 290 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCc-EEEecCCCC
Confidence 467999999988889999999999984 777877753
No 225
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=21.52 E-value=1.1e+02 Score=24.49 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=15.0
Q ss_pred CCcEEEEeCCC-hhHHH-HHHHHHHcCCC
Q 022540 246 QKDTYVMCHHG-MRSLQ-VAQWLQTQGFR 272 (295)
Q Consensus 246 ~~~ivv~C~~g-~rs~~-aa~~L~~~G~~ 272 (295)
..|++++|..| .|... ++..|.-+|.+
T Consensus 124 ~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 124 PGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp T--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred CCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 36999999977 46554 45555668865
No 226
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=21.43 E-value=1.1e+02 Score=24.94 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=24.4
Q ss_pred EEEeCCChhHHHHHHHHHHcCCCceEEcccc
Q 022540 250 YVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG 280 (295)
Q Consensus 250 vv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG 280 (295)
+++|.....-..+...++..||.++-++.+|
T Consensus 75 vv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~ 105 (187)
T COG3620 75 VVSVSPDDSISDVVNLMRDKGISQLPVIEED 105 (187)
T ss_pred eeEECchhhHHHHHHHHHHcCCccCceeeCC
Confidence 4567766667788899999999998877654
No 227
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=21.40 E-value=54 Score=31.97 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=22.1
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCc
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRR 273 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~ 273 (295)
..+||.|+|.+|.-.+...-...+.++..
T Consensus 69 s~rPVavi~TSGTA~ANl~PAViEA~~sr 97 (566)
T COG1165 69 SKRPVAVICTSGTAVANLYPAVIEANLSR 97 (566)
T ss_pred cCCCEEEEEcCcchhhhccHHHHhhhhcC
Confidence 57899999999988777766666655544
No 228
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=21.40 E-value=1.2e+02 Score=27.61 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=31.5
Q ss_pred CCCCcEEEEeCCChhHHHHHHHHHHcCCC-ceEEccccH
Q 022540 244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFR-RVFNVSGGI 281 (295)
Q Consensus 244 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~-~v~~l~GG~ 281 (295)
.++.+++|+|++-..+..++..|++.+.. ++..+.|++
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 45788999999988888999999988874 588888875
No 229
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=21.17 E-value=1.1e+02 Score=29.11 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=27.4
Q ss_pred cEEEEeCCChhHHHHHHHHHHc-----C---CCceEEccccHhhcc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQTQ-----G---FRRVFNVSGGIHAYA 285 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~W~ 285 (295)
.-+++|++|..+..+|..|.+. | -++|..+.||+++|.
T Consensus 110 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 155 (445)
T PRK09221 110 DHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVG 155 (445)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccc
Confidence 3577799999887777666442 3 345888899999985
No 230
>PRK06105 aminotransferase; Provisional
Probab=20.88 E-value=1.4e+02 Score=28.53 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=28.3
Q ss_pred cEEEEeCCChhHHHHHHHHHH-----cCC---CceEEccccHhhccc
Q 022540 248 DTYVMCHHGMRSLQVAQWLQT-----QGF---RRVFNVSGGIHAYAT 286 (295)
Q Consensus 248 ~ivv~C~~g~rs~~aa~~L~~-----~G~---~~v~~l~GG~~~W~~ 286 (295)
.-+++|++|..+..+|..|.+ .|+ ++|..+.||+++|.-
T Consensus 110 ~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~ 156 (460)
T PRK06105 110 SKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTI 156 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcch
Confidence 457889999988877766632 143 357888999999973
No 231
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=20.87 E-value=1.2e+02 Score=29.14 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=28.0
Q ss_pred EEEEeCCChhHHHHHHHHHHc-----C---CCceEEccccHhhcc
Q 022540 249 TYVMCHHGMRSLQVAQWLQTQ-----G---FRRVFNVSGGIHAYA 285 (295)
Q Consensus 249 ivv~C~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~W~ 285 (295)
-+++|++|..+..+|..|.+. | -+.|..+.||+++|.
T Consensus 131 ~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t 175 (472)
T PRK08742 131 KVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGET 175 (472)
T ss_pred EEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCc
Confidence 588899999988777666442 2 345888999999986
No 232
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=20.64 E-value=1.6e+02 Score=25.24 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=22.0
Q ss_pred CCCCcEEEEeCCChhHHHH-----HHHHHHcCCCceEEc
Q 022540 244 DPQKDTYVMCHHGMRSLQV-----AQWLQTQGFRRVFNV 277 (295)
Q Consensus 244 ~~~~~ivv~C~~g~rs~~a-----a~~L~~~G~~~v~~l 277 (295)
.++..+|+.|.+....+.+ -..|...||++|++.
T Consensus 135 ~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 135 NKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred CcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 4788899999754332222 234577899988743
No 233
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=20.12 E-value=1.7e+02 Score=22.58 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=26.4
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEcccc
Q 022540 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG 280 (295)
Q Consensus 245 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG 280 (295)
++++++|+.. |.-+..++..|...|+++|+++.--
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4556666664 7788888899999999888877543
Done!