BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022541
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JK81|MYG1_MOUSE UPF0160 protein MYG1, mitochondrial OS=Mus musculus GN=Myg1 PE=2
SV=1
Length = 380
Score = 276 bits (706), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/287 (49%), Positives = 186/287 (64%), Gaps = 11/287 (3%)
Query: 13 LDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELI 67
L D V+DVGG Y+P + YDHHQ+ F E G + TKLSSAGLVY HFG++L+
Sbjct: 84 LASCDIVVDVGGEYNPQSHRYDHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGRKLL 143
Query: 68 AKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLN 127
A+ L E V ++ +Y+NF+E +DA+DNGI+Q+ + PRY T LS+RV +LN
Sbjct: 144 AQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQW-AEGEPRYAMTTTLSARVARLN 202
Query: 128 LDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSG 187
W +P+Q E F++ MDL +EFL + FY SWLPAR++V E +A+R+ D SG
Sbjct: 203 PTWNQPNQDTE---AGFRRAMDLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSG 259
Query: 188 EIMVL-KRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPL 246
EI+ L K CPWK HL+ LE E+ + I +V+Y D G QWRVQ V P F+SR PL
Sbjct: 260 EIVELAKGGCPWKEHLYHLESELSPKVAITFVIYTDQAG-QWRVQCVPKEPHSFQSRLPL 318
Query: 247 PAQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAAL 293
P WRGLRD L + +GIPGC+FVH SGFIGG+ + GAL MARA L
Sbjct: 319 PEPWRGLRDKALDQVSGIPGCIFVHASGFIGGHHTREGALNMARATL 365
>sp|Q641W2|MYG1_RAT UPF0160 protein MYG1, mitochondrial OS=Rattus norvegicus GN=Myg1
PE=1 SV=1
Length = 381
Score = 274 bits (701), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 142/283 (50%), Positives = 183/283 (64%), Gaps = 11/283 (3%)
Query: 17 DAVLDVGGVYDPSNDCYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAKEL 71
D V+DVGG Y+P YDHHQ+ F E G + TKLSSAGLVY HFG +L+A+ L
Sbjct: 89 DIVVDVGGEYNPQRHRYDHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGHKLLAQLL 148
Query: 72 NVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWT 131
E V ++ +Y+NF+E +DA+DNGI+Q+ + PRY T LS+RV +LN W
Sbjct: 149 GTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVSRLNPTWN 207
Query: 132 EPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMV 191
+PDQ E F++ MDL +EFL + FY SWLPAR++V E +A+R+ D SGEI+
Sbjct: 208 QPDQDTE---AGFRRAMDLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSGEIVE 264
Query: 192 L-KRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQW 250
L K CPWK HL+ LE E+ I +V+Y D G QWRVQ V P F+SR PLP W
Sbjct: 265 LAKGGCPWKEHLYHLESELSPTVAITFVIYTDQAG-QWRVQCVPKEPHSFQSRLPLPEPW 323
Query: 251 RGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAAL 293
RGLRD+ L + +GIPGC+FVH SGFIGG+ + GAL MARA L
Sbjct: 324 RGLRDEALDQVSGIPGCIFVHASGFIGGHHTREGALNMARATL 366
>sp|Q9HB07|MYG1_HUMAN UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10
PE=1 SV=2
Length = 376
Score = 274 bits (701), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 142/287 (49%), Positives = 183/287 (63%), Gaps = 11/287 (3%)
Query: 13 LDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELI 67
L D V+DVGG YDP YDHHQ+ F E G + TKLSSAGL+Y HFG +L+
Sbjct: 85 LASCDIVVDVGGEYDPRRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLL 144
Query: 68 AKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLN 127
A+ L E V L+ +Y+NF+E +DA+DNGI+Q+ + PRY T LS+RV +LN
Sbjct: 145 AQLLGTSEEDSMVGTLYDKMYENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVARLN 203
Query: 128 LDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSG 187
W PDQ E F++ MDL +EFL + FY SWLPAR++V E +A+R+ DPSG
Sbjct: 204 PTWNHPDQDTE---AGFKRAMDLVQEEFLQRLDFYQHSWLPARALVEEALAQRFQVDPSG 260
Query: 188 EIMVL-KRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPL 246
EI+ L K CPWK HL+ LE + I +V+Y D G QWR+Q V P F+SR PL
Sbjct: 261 EIVELAKGACPWKEHLYHLESGLSPPVAIFFVIYTDQAG-QWRIQCVPKEPHSFQSRLPL 319
Query: 247 PAQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAAL 293
P WRGLRD+ L + +GIPGC+FVH SGF GG+ + GAL+MARA L
Sbjct: 320 PEPWRGLRDEALDQVSGIPGCIFVHASGFTGGHHTREGALSMARATL 366
>sp|Q58DG1|MYG1_BOVIN UPF0160 protein MYG1, mitochondrial OS=Bos taurus PE=2 SV=1
Length = 381
Score = 272 bits (696), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/287 (49%), Positives = 189/287 (65%), Gaps = 11/287 (3%)
Query: 13 LDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELI 67
L D V+DVGG YDP YDHHQ+ F E G + TKLSSAGL+Y HFG +L+
Sbjct: 85 LAACDIVVDVGGEYDPQRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLL 144
Query: 68 AKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLN 127
A+ L E V L+ +Y+NF+E +DA+DNGI+Q++ +P RY+ T LS+RV +LN
Sbjct: 145 AQLLGTSEEDGMVGTLYDKMYENFVEEVDAVDNGISQWEEGEP-RYLLTTTLSARVARLN 203
Query: 128 LDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSG 187
W +P+Q E F++ MDL +EFL + FY SWLPAR++V E +A+R+ DPSG
Sbjct: 204 PTWNQPNQDTE---AGFKRAMDLVREEFLQRLDFYQNSWLPARTLVEEALAKRFQVDPSG 260
Query: 188 EIMVLKRF-CPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPL 246
EI+ L++ CPWK HL++LE + I +V+Y D G QWRVQ V P F+SR PL
Sbjct: 261 EIIELEKGGCPWKEHLYQLELGLSPAGTIAFVIYTDQAG-QWRVQCVPKEPHSFQSRLPL 319
Query: 247 PAQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAAL 293
WRGLRD+ L + +GIPGC+FVH SGFIGG+++ GAL+MARA L
Sbjct: 320 LEPWRGLRDEALDQISGIPGCIFVHASGFIGGHRTREGALSMARATL 366
>sp|O17606|YK4P_CAEEL UPF0160 protein C27H6.8 OS=Caenorhabditis elegans GN=C27H6.8 PE=3
SV=2
Length = 340
Score = 268 bits (684), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 138/290 (47%), Positives = 189/290 (65%), Gaps = 12/290 (4%)
Query: 13 LDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGH----GFSTKLSSAGLVYKHFGKELIA 68
L+ D ++DVGG++D S YDHHQ+GF + F TKLSSAGLVY H+G+E+I
Sbjct: 43 LEKCDIIVDVGGIFDHSKQRYDHHQRGFTDTMRTLEKLNFDTKLSSAGLVYAHYGREVIN 102
Query: 69 KELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNL 128
+ L + + + +Y+ F+E+IDAIDNGI+QYD PRY ++ NLSSR G+ N
Sbjct: 103 QILGGNVSSSMIDLFYHRLYEQFVESIDAIDNGISQYDG--VPRYHSSGNLSSRTGQFNS 160
Query: 129 DWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGE 188
W EP+ A+ E FQQ M G+EF +V++ W PAR I+ + +R++ D SG
Sbjct: 161 HWNEPENDAD---ERFQQAMQFIGEEFSRSVKYLANVWWPAREIIEAAVDKRFEIDASGR 217
Query: 189 IMVLKRF-CPWKLHLFELEEEMKI-EPLIKYVLYEDDRGKQWRVQAVAVSP-DRFESRKP 245
I++++ CPWK H F++E E I + I Y+L+ D WRVQA+ V FE+R P
Sbjct: 218 IILIENGGCPWKEHFFDIEVEKNIADDNITYILFSDSTNASWRVQAIPVDKMSSFENRMP 277
Query: 246 LPAQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAALKL 295
LPA WRGLRDD+LSKE+GIPG VFVH+SGFIGGN + GA+AMAR AL++
Sbjct: 278 LPAAWRGLRDDDLSKESGIPGGVFVHISGFIGGNLTREGAIAMARKALEI 327
>sp|Q55G91|U160_DICDI UPF0160 protein OS=Dictyostelium discoideum GN=DDB_G0267768 PE=3
SV=1
Length = 329
Score = 265 bits (676), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 184/282 (65%), Gaps = 4/282 (1%)
Query: 12 VLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKEL 71
V++ +DVG VY+ +DHHQ GF E F KLSSAGL+YKH+GK++I + L
Sbjct: 43 VIEKSTVAVDVGAVYNFEKLRFDHHQSGFTETFDDKHDIKLSSAGLIYKHYGKDIIKQRL 102
Query: 72 NVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWT 131
+ ++ ++ L+ +Y + ++ +D +DNG+ +Y +D PRY + +++S+RVG LN W
Sbjct: 103 DTNDSITEL--LYQKLYDSMIQELDGVDNGVERYPSDIKPRYQSGSSISARVGHLNQGWN 160
Query: 132 EPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMV 191
EP Q E N+ F++ M+L G+ FLD + +Y +SWLP RSIV + R SGEI++
Sbjct: 161 EP-QDDEIVNKQFEKAMELMGQYFLDRLDYYGKSWLPCRSIVENALENRKQTHSSGEILI 219
Query: 192 LKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWR 251
L FCPWK HLF LE+E I+ IK+VL+ED G QWRV AV ++ F R PLP +WR
Sbjct: 220 LDMFCPWKDHLFSLEQEKDIKTPIKFVLFEDTSG-QWRVSAVGINLHSFTLRLPLPEEWR 278
Query: 252 GLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAAL 293
G RD+ELS+ +GI GCVF H +GFIGGN++ GAL MA L
Sbjct: 279 GKRDEELSQISGIEGCVFAHANGFIGGNKTREGALLMAIKTL 320
>sp|Q9P7T6|YIW4_SCHPO UPF0160 protein C694.04c OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC694.04c PE=3 SV=1
Length = 324
Score = 251 bits (640), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 178/286 (62%), Gaps = 12/286 (4%)
Query: 11 QVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAK- 69
QVLD D ++DVGG YD +DHHQ+ F + F +ST+LSSAGL+YKHFG+E+I
Sbjct: 43 QVLDSCDIIVDVGGKYD-GIKYFDHHQREFNDTFSPKYSTRLSSAGLIYKHFGREVIHAV 101
Query: 70 --ELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLN 127
+L ++E D+ L+ VY++F+E +DA DNGI+ Y P + +L V
Sbjct: 102 LPQLKINEQ--DLETLYEKVYQSFVEGLDANDNGISAYPAGLKPSFKAAMSLPEMVSSFL 159
Query: 128 LDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSG 187
W Q + E FQ+ DL G F+ +V Y SWLPA+++ E I + D
Sbjct: 160 PAWNSEKQDDQTYLECFQKASDLMGTWFVRSVEHYALSWLPAKTLAREAILKAKD----S 215
Query: 188 EIMVLKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLP 247
I+++ +F PWK HLF++E+E+ IE KY +Y D GK WRVQAV++ P F R PLP
Sbjct: 216 PILIVDQFFPWKGHLFDIEKELGIENQFKYAIYSD--GKAWRVQAVSIDPTSFTCRLPLP 273
Query: 248 AQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAAL 293
WRG+RD++LS+ GIPGC+FVH SGFIGGNQ++ GAL MAR AL
Sbjct: 274 EPWRGIRDEKLSELTGIPGCIFVHASGFIGGNQTFEGALEMARKAL 319
>sp|P40093|YEY6_YEAST UPF0160 protein YER156C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YER156C PE=1 SV=1
Length = 338
Score = 239 bits (611), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 179/282 (63%), Gaps = 8/282 (2%)
Query: 17 DAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEG 76
D ++DVG YD +DHHQ+GF E F + TKLSSAGL++KH+G+++I LN
Sbjct: 59 DILVDVGAQYDGVK-FFDHHQRGFFETFNEKYKTKLSSAGLIFKHYGRDIIKTILNNKVS 117
Query: 77 HPDVHRLFLAVYKNFMEAIDAIDNGINQY----DTDKPPRYVNNT-NLSSRVGKLNLDWT 131
D+ L+ VYK F+EA+DA DNGI++Y D++ P + +N ++ + +N +W
Sbjct: 118 SSDLDLLYDKVYKQFVEALDANDNGISKYTIPKDSNLEPNFRDNAISIPGIISGMNPNWN 177
Query: 132 EPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMV 191
E D S E + F + + G F+ VR Y +SWLPA+++V + I ER D D SG+I+V
Sbjct: 178 E-DTSDESFDRCFARASEFIGGVFVTLVRGYGQSWLPAKALVAQAIDERMDVDKSGKIIV 236
Query: 192 LKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWR 251
L +FCPWK HL+ELE E IE I++VL+ D G WRV V ++ F+ R+ LP R
Sbjct: 237 LPQFCPWKEHLYELEREKNIEKQIEFVLFTDSSG-AWRVSTVPINSTSFQFRRGLPEPLR 295
Query: 252 GLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAAL 293
GLRD+ELS ++G+PGC+F+H +GFIGG +S +A+ +L
Sbjct: 296 GLRDEELSTKSGVPGCIFIHAAGFIGGAKSKEAVYELAKMSL 337
>sp|Q9Z862|Y489_CHLPN UPF0160 protein CPn_0489/CP_0265/CPj0489/CpB0509 OS=Chlamydia
pneumoniae GN=CPn_0489 PE=3 SV=2
Length = 290
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 106/268 (39%), Gaps = 45/268 (16%)
Query: 12 VLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKEL 71
VL + V DVGGVY N +DHHQ ++ SSAG++ H+ KE +
Sbjct: 44 VLSKCEYVCDVGGVYSIENKRFDHHQVSYD--------GSWSSAGMIL-HYLKEF--GYM 92
Query: 72 NVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWT 131
+ +E H FL + +D DNG R+ + S + +
Sbjct: 93 DCEEYH------FLN--NTLVHGVDEQDNG----------RFFSKEGFCSFSDIIKI--Y 132
Query: 132 EPDQSAERENEA-FQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIM 190
P + E ++A F + +FL +R + R IV E + + +
Sbjct: 133 NPREEEETNSDADFSCALHFT-IDFLCRLRKKFQYDRVCRGIVREAM------ETEDMCL 185
Query: 191 VLKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDR-FESRKPLPAQ 249
R W+ + F L E + + QW ++ + + DR E R P P
Sbjct: 186 YFDRPLAWQENFFFLGGEKHPAAFVCF-----PSCDQWILRGIPPNLDRRMEVRVPFPEN 240
Query: 250 WRGLRDDELSKEAGIPGCVFVHMSGFIG 277
W GL ELSK +GIPG VF H F+
Sbjct: 241 WAGLLGKELSKVSGIPGAVFCHKGLFLS 268
>sp|Q9PK08|Y665_CHLMU UPF0160 protein TC_0665 OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=TC_0665 PE=3 SV=2
Length = 289
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 100/267 (37%), Gaps = 48/267 (17%)
Query: 13 LDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLV--YKHFGKELIAKE 70
L + V DVGG Y ++ +DHHQ + + SSAG+V Y H L
Sbjct: 45 LAQCEYVCDVGGRYSIADKRFDHHQVSY--------TGSWSSAGMVLDYLHHLGSL---- 92
Query: 71 LNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDW 130
H + + + +D DNG R+ + S + +
Sbjct: 93 ---------PHEEYEYLNSTLVHGVDEQDNG----------RFFSKEGFCSFSDIIKI-- 131
Query: 131 TEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIM 190
P + ++ F + A + L +R R R +V + + E+ D +
Sbjct: 132 YNPLEEGGNTDKEFFFALHFA-IDLLTRLREKFRYDRICRDVVKQ-VMEKEDV-----CL 184
Query: 191 VLKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDR-FESRKPLPAQ 249
R W+ + F L E + + + QW ++ + + DR E R P P
Sbjct: 185 RFDRPLAWQENFFSLGGENHPAAFVSFPCSD-----QWILRGIPPTLDRRMEVRIPFPED 239
Query: 250 WRGLRDDELSKEAGIPGCVFVHMSGFI 276
W GL D+L K GIPG +F H F+
Sbjct: 240 WAGLLGDQLVKATGIPGAIFCHKGLFL 266
>sp|O84391|Y386_CHLTR UPF0160 protein CT_386 OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=CT_386 PE=3 SV=2
Length = 289
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 101/275 (36%), Gaps = 60/275 (21%)
Query: 11 QVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHF-GKELIAK 69
Q L + V DVGG Y + +DHHQ + + SSAG+V + G ++
Sbjct: 43 QKLAQCEYVCDVGGRYSTEHKRFDHHQVSY--------TGSWSSAGMVLDYLHGLGFLS- 93
Query: 70 ELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLD 129
H + + + +D DNG R+ + S + +
Sbjct: 94 -----------HDEYEYLNNTLVHGVDEQDNG----------RFFSKEGFCSFSDIIKI- 131
Query: 130 WTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEI 189
++G + KEF +RF + R + +R D ++
Sbjct: 132 -----------YNPLEEGGN-TDKEFFFALRFAIDLLTRLRE---KFCYDRVCRDIVKQV 176
Query: 190 MVLKRFC-------PWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDR-FE 241
M + C W+ + F L E + + + QW ++ + + DR E
Sbjct: 177 MEKESVCLRFDRPLAWQENFFSLGGESHPAAFVSFPCSD-----QWILRGIPPTLDRRME 231
Query: 242 SRKPLPAQWRGLRDDELSKEAGIPGCVFVHMSGFI 276
R P P +W GL D+L + GIPG +F H F+
Sbjct: 232 VRIPFPEEWAGLLGDQLVQATGIPGAIFCHKGLFL 266
>sp|A8G9P6|RAPA_SERP5 RNA polymerase-associated protein RapA OS=Serratia proteamaculans
(strain 568) GN=rapA PE=3 SV=1
Length = 968
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 177 IAERYDYDPSGEIMVL----KRFCPWKLHLF-ELEEEMKIEPLIKYVLYEDDRGKQWRVQ 231
+AE+ Y P + + L +R KL+L EL +E IEPL+K + D +Q R +
Sbjct: 343 VAEQQKYRPVADAVTLLLSGERLADDKLNLLGELIDEQDIEPLLKAANSDSDNSEQARQE 402
Query: 232 AVAVSPDRFESRKPL 246
V + DR + + L
Sbjct: 403 LVTMLMDRHGTSRVL 417
>sp|Q68DY9|ZN772_HUMAN Zinc finger protein 772 OS=Homo sapiens GN=ZNF772 PE=2 SV=2
Length = 489
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 242 SRKPLPAQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGA 285
SRKP+ AQ + + E+ E GI G VF H S I + + GA
Sbjct: 304 SRKPILAQHQRIHTGEMPYECGICGKVFNHSSNLIVHQRVHTGA 347
>sp|Q0BWJ8|ACCD_HYPNA Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Hyphomonas neptunium (strain ATCC 15444) GN=accD PE=3
SV=1
Length = 326
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 25/109 (22%)
Query: 209 MKIEPLIKY-VLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKE------ 261
++I P +++ +L++D+R + + V + P +F+ KP PA+ + + L+++
Sbjct: 54 LRISPRMRFRILFDDERWEPISLPQVPLDPLKFKDDKPYPARLKAAKAKILNRDIKETED 113
Query: 262 ------------------AGIPGCVFVHMSGFIGGNQSYGGALAMARAA 292
G+P V V F+GG+ A AA
Sbjct: 114 GGAPLLQEDCMVAAYGKIGGVPAVVLVQDFEFMGGSLGMAAGEAFITAA 162
>sp|Q8CXS3|TGT_LEPIN Queuine tRNA-ribosyltransferase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=tgt
PE=3 SV=1
Length = 374
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 75 EGHPDVHR-LFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNL 128
H D +R L+L + +D + NG++ +D P R N + + +GK+NL
Sbjct: 234 SAHTDRNRPLYLMGVGTVPDILDGVKNGVDMFDCVLPTRNARNGQVFTTLGKINL 288
>sp|Q72TL3|TGT_LEPIC Queuine tRNA-ribosyltransferase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=tgt PE=3 SV=1
Length = 374
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 75 EGHPDVHR-LFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNL 128
H D +R L+L + +D + NG++ +D P R N + + +GK+NL
Sbjct: 234 SAHTDRNRPLYLMGVGTVPDILDGVKNGVDMFDCVLPTRNARNGQVFTTLGKINL 288
>sp|O01510|SMG1_CAEEL Serine/threonine-protein kinase smg-1 OS=Caenorhabditis elegans
GN=smg-1 PE=1 SV=3
Length = 2322
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 14/110 (12%)
Query: 58 VYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNT 117
+++ F EL E + HP+V+ LF+ + F+ + A D I Q D V
Sbjct: 475 IFEFFSSELPLTEYWLASNHPEVYHLFITI---FVGHLKAHDFYIVQSD-----YIVRGD 526
Query: 118 NLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWL 167
++ +G+ D+ A ++ A Q+ ++ G + R + SWL
Sbjct: 527 SIGQSIGQTKRDY------ARKQVVALQKIINNFGDKLWKKTRLMISSWL 570
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,887,926
Number of Sequences: 539616
Number of extensions: 5342900
Number of successful extensions: 11328
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 11275
Number of HSP's gapped (non-prelim): 33
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)