Query 022541
Match_columns 295
No_of_seqs 110 out of 349
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:19:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2948 Predicted metal-bindin 100.0 7E-117 1E-121 815.8 26.0 284 8-295 40-323 (327)
2 PF03690 UPF0160: Uncharacteri 100.0 1E-114 2E-119 822.5 29.5 283 8-294 36-318 (318)
3 COG4286 Uncharacterized conser 100.0 1.9E-90 4.1E-95 636.5 22.7 267 8-294 40-306 (306)
4 PF03681 UPF0150: Uncharacteri 58.1 9.6 0.00021 26.1 2.4 18 277-294 26-43 (48)
5 PHA02094 hypothetical protein 55.2 14 0.00029 28.5 2.9 42 57-98 1-53 (81)
6 COG2404 Predicted phosphohydro 45.8 5.2 0.00011 39.2 -0.8 32 32-64 87-126 (339)
7 TIGR03793 TOMM_pelo TOMM prope 41.3 5.2 0.00011 31.1 -1.3 12 252-263 65-76 (77)
8 PF11009 DUF2847: Protein of u 38.1 71 0.0015 26.3 4.8 45 159-204 52-98 (105)
9 PLN02707 Soluble inorganic pyr 35.1 80 0.0017 30.2 5.3 71 224-294 174-249 (267)
10 PRK15008 HTH-type transcriptio 33.9 35 0.00076 30.0 2.6 35 54-99 51-85 (212)
11 PF02276 CytoC_RC: Photosynthe 33.6 12 0.00027 36.3 -0.4 21 258-279 221-241 (314)
12 PF00386 C1q: C1q domain; Int 30.5 24 0.00052 28.6 0.9 24 16-39 22-45 (127)
13 smart00110 C1Q Complement comp 25.3 37 0.00079 28.7 1.2 23 17-39 29-51 (135)
14 PF05595 DUF771: Domain of unk 23.9 51 0.0011 26.0 1.7 18 216-233 60-77 (91)
15 PF04369 Lactococcin: Lactococ 23.8 62 0.0014 24.2 2.0 25 251-276 8-32 (60)
16 KOG4457 Uncharacterized conser 22.0 13 0.00029 33.4 -2.2 34 26-61 130-164 (202)
No 1
>KOG2948 consensus Predicted metal-binding protein [General function prediction only]
Probab=100.00 E-value=6.7e-117 Score=815.85 Aligned_cols=284 Identities=60% Similarity=1.058 Sum_probs=275.4
Q ss_pred CCccccccCCEEEecCccccCCCCCCCCCCCCccccccCCCccccccchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 022541 8 WGMQVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAV 87 (295)
Q Consensus 8 ~d~~~l~~cDiVvDVGgvyDp~~~rfDHHQr~F~~t~~~~~~~~lSSAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kv 87 (295)
.||++|++|||||||||+|||+++|||||||+|++||+.+|+||||||||||||||+++|.++++...++++++.+|.+|
T Consensus 40 Rd~~~l~s~DIvvDVGg~yDp~~~ryDHHQr~F~ETfs~~~~tKLSSAGLIykhyG~~vi~~~l~~~~s~~~~~~l~~kv 119 (327)
T KOG2948|consen 40 RDPKVLESCDIVVDVGGVYDPEKKRYDHHQRGFFETFSPKYKTKLSSAGLIYKHYGREVISKILQNKVSSSDLDLLYDKV 119 (327)
T ss_pred CCHHHHhhcCEEEecCccccccccccchhhhhhhhhcCCccceeecccceeHHHhhHHHHHHHhcccCChhHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHhhhhcCccccCCCCCCccccCCChhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022541 88 YKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWL 167 (295)
Q Consensus 88 y~~fi~~IDaiDNGv~~~~~~~~~~y~~~~~lS~~V~~lNP~W~~~~~~~~~~d~~F~~A~~l~~~ef~~~v~~~~~~~l 167 (295)
|++||+++|||||||++|. +++|+|..+|+||+||++|||.||+. ++++++++|.+||++++++|.+.|..++++|+
T Consensus 120 Y~~Fve~~DAiDNGi~~y~-~~~Pry~~~~~l~~rv~~~N~~w~e~--~~~~~~e~F~~Am~~vg~ef~~~v~~~~~sWl 196 (327)
T KOG2948|consen 120 YKNFVEALDAIDNGISQYG-EIEPRYKSSTSLSHRVGRFNPDWNED--SDDDEDERFQRAMDLVGKEFVNSVKFYANSWL 196 (327)
T ss_pred HHHHHHHhhccccchhhhc-CCCCccccccchHHHHhhcCCCcccC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999994 78999999999999999999999974 45789999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCcCCCCcEEEEcCCCChhhHHHhhhhhhccCCcEEEEEEecCCCCCeEEEEEeCCCCCCccCCCCC
Q 022541 168 PARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLP 247 (295)
Q Consensus 168 pAr~~V~~A~~~R~~~~~sg~Ilvl~~~~PWk~hl~~lE~e~~~~~~i~fviyp~~~~~~wriq~Vp~~~~sF~~R~~LP 247 (295)
|||++|++|+++|+++|+||.|++++++||||+|||+||+|++++..|+||||++ .+++|||||||++++||++|+|||
T Consensus 197 Par~~v~~ai~er~~~d~sG~i~v~~~~cPWk~hlfelE~e~~ie~~i~fvlf~d-~~~~wRVqaVpv~p~sFe~R~pLp 275 (327)
T KOG2948|consen 197 PARELVEEAIAERFDVDPSGIILVLKQFCPWKEHLFELEKEYKIEVKIKFVLFTD-ESGSWRVQAVPVDPGSFESRKPLP 275 (327)
T ss_pred cHHHHHHHHHHHhcCCCCCceEEEecCCCchHHHHHHHHHHhCCCcceEEEEEeC-CCCcEEEEEEecCCCcccccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999 456999999999999999999999
Q ss_pred cccCCCChHHHhhhhCCCCceEeecCCcccccCCHHHHHHHHHHHhcC
Q 022541 248 AQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAALKL 295 (295)
Q Consensus 248 e~WrGlrdeeL~~vsGI~g~vFvH~sGFigg~kt~egAL~mA~~aL~~ 295 (295)
++|||||||+|+++||||||+|||+|||||||+|+||||+||++||+.
T Consensus 276 ~~WRGLrdeeLs~~SgIpgc~FVH~SGFIGgn~T~EgAl~Mar~sl~~ 323 (327)
T KOG2948|consen 276 EPWRGLRDEELSEVSGIPGCIFVHASGFIGGNKTREGALEMARKSLEA 323 (327)
T ss_pred hhhccccchhhhhhcCCCCeEEEeecccccCcccHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999963
No 2
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=100.00 E-value=1e-114 Score=822.49 Aligned_cols=283 Identities=57% Similarity=1.001 Sum_probs=274.8
Q ss_pred CCccccccCCEEEecCccccCCCCCCCCCCCCccccccCCCccccccchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 022541 8 WGMQVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAV 87 (295)
Q Consensus 8 ~d~~~l~~cDiVvDVGgvyDp~~~rfDHHQr~F~~t~~~~~~~~lSSAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kv 87 (295)
.||++|++|||||||||+|||+++|||||||+|++||..+++||||||||||+|||++||+++++.+.++++++.||++|
T Consensus 36 Rd~~~l~~cDiVvDVGg~yDp~~~rfDHHQ~~f~~tf~~~~~~~lSSAGLIy~~fG~~ii~~~~~~~~~~~~~~~l~~~i 115 (318)
T PF03690_consen 36 RDPEVLEKCDIVVDVGGVYDPEKGRFDHHQRGFNETFSRENGIKLSSAGLIYKHFGKEIIRNLLGDPVDEEDIELLYEKI 115 (318)
T ss_pred CChhhhccCCEEEecCCccccccCccccccccCccccccCCCceeecccHHHHHHHHHHHHHhcCcCCChHHHHHHHHHH
Confidence 69999999999999999999999999999999999998889999999999999999999999998889999999999999
Q ss_pred HHHHHHHHhhhhcCccccCCCCCCccccCCChhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022541 88 YKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWL 167 (295)
Q Consensus 88 y~~fi~~IDaiDNGv~~~~~~~~~~y~~~~~lS~~V~~lNP~W~~~~~~~~~~d~~F~~A~~l~~~ef~~~v~~~~~~~l 167 (295)
|++||++||||||||+++ +++++|.++|+||+||++|||.||++ .++++++++|++||+|++++|.++|+++..+|+
T Consensus 116 y~~fv~~iDaiDNGv~~~--~~~~~y~~~~~ls~~V~~~Np~w~~~-~~~~~~~~~F~~A~~l~~~~f~~~v~~~~~~wl 192 (318)
T PF03690_consen 116 YESFVESIDAIDNGVSIY--DGEPKYKINTSLSSRVSRLNPSWNEP-DDDEDEDERFEKAMELAGEEFENRVKYYAKSWL 192 (318)
T ss_pred HHHHHHHhhhhhcCCccc--CccccccCCCCHHHHHHHhCCCCCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999999999999999999 46899999999999999999999997 346789999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCcCCCCcEEEEcCCCChhhHHHhhhhhhccCCcEEEEEEecCCCCCeEEEEEeCCCCCCccCCCCC
Q 022541 168 PARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLP 247 (295)
Q Consensus 168 pAr~~V~~A~~~R~~~~~sg~Ilvl~~~~PWk~hl~~lE~e~~~~~~i~fviyp~~~~~~wriq~Vp~~~~sF~~R~~LP 247 (295)
|||++|++|+++|+++|+||+||+|+++||||+||++||++++++++|+|||||+ .+++|||||||++++||++|+|||
T Consensus 193 pAr~~V~~A~~~r~~v~~sg~Il~l~~~~Pwk~~l~~le~e~~~~~~i~fvi~p~-~~~~wriq~Vp~~~~sF~~R~~LP 271 (318)
T PF03690_consen 193 PARSIVEEAIENRFEVHPSGRILVLDRSCPWKEHLFELEEELKIEGEILFVIYPD-GSGGWRIQAVPVSPGSFENRKPLP 271 (318)
T ss_pred hHHHHHHHHHHHhhccCCCCCEEEecCCCcHHHHHHHHhhhhCCCCceEEEEEEC-CCCCEEEEEecCCCCCcccccCCC
Confidence 9999999999999999999999999999999999999999999989999999999 468999999999999999999999
Q ss_pred cccCCCChHHHhhhhCCCCceEeecCCcccccCCHHHHHHHHHHHhc
Q 022541 248 AQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAALK 294 (295)
Q Consensus 248 e~WrGlrdeeL~~vsGI~g~vFvH~sGFigg~kt~egAL~mA~~aL~ 294 (295)
++||||||+||+++||||||+|||+|||||||+|+||||+||++||+
T Consensus 272 ~~WrGlrdeeL~~vsGI~g~vFvH~sGFigg~kt~egAl~mA~~aLe 318 (318)
T PF03690_consen 272 EEWRGLRDEELSEVSGIPGAVFVHASGFIGGAKTREGALEMARKALE 318 (318)
T ss_pred hhhCCCCHHHHHHhcCCCCcEEEcCCCCeeecCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999996
No 3
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=100.00 E-value=1.9e-90 Score=636.52 Aligned_cols=267 Identities=45% Similarity=0.846 Sum_probs=247.2
Q ss_pred CCccccccCCEEEecCccccCCCCCCCCCCCCccccccCCCccccccchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 022541 8 WGMQVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAV 87 (295)
Q Consensus 8 ~d~~~l~~cDiVvDVGgvyDp~~~rfDHHQr~F~~t~~~~~~~~lSSAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kv 87 (295)
.||++|++|||||||||+|||+.+|||||||+|++||+++|.||||||||||||||+++|.. ++++.++++++.+|+++
T Consensus 40 Rdp~~l~s~div~DVGg~yd~e~krFDHHQr~f~~tfspky~~klSSaGLI~kyfgr~~l~~-~~~~~~~~~~~~l~e~v 118 (306)
T COG4286 40 RDPQVLDSCDIVYDVGGVYDPEKKRFDHHQRSFNETFSPKYKTKLSSAGLIYKYFGRDGLAT-YGINRSEDDLETLYEKV 118 (306)
T ss_pred cChhhhhcCCEEEecCcccccccccccccccccCcccCccccccccccchHHHHhhhhHHHH-hCCccchhhHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999985 46668899999999999
Q ss_pred HHHHHHHHhhhhcCccccCCCCCCccccCCChhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022541 88 YKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWL 167 (295)
Q Consensus 88 y~~fi~~IDaiDNGv~~~~~~~~~~y~~~~~lS~~V~~lNP~W~~~~~~~~~~d~~F~~A~~l~~~ef~~~v~~~~~~~l 167 (295)
|+.||+++||+|||+..|. +.+| .++||.+|+.|||.|+++ +..|+.|..|+++|.+.+.+.+... .+|+
T Consensus 119 y~~fv~~~Da~DNG~~~~~-~i~p----f~sl~~iv~~~np~~~~e----~~~d~~F~~al~~a~~~l~~~~~~~-~~w~ 188 (306)
T COG4286 119 YNTFVLGVDAIDNGISIYG-EIEP----FRSLPDIVESFNPDWSDE----DADDEGFLEALAFASDFLDNLFKTI-VSWL 188 (306)
T ss_pred HHhhhcccccccCcccccc-ccCc----ccchHHHHHhcCCCcCCC----CcchHHHHHHHHHHHHHHHHHHHHH-Hhhh
Confidence 9999999999999999983 3444 357999999999999875 4568889999999999888888885 4999
Q ss_pred ccHHHHHHHHHHhcCcCCCCcEEEEcCCCChhhHHHhhhhhhccCCcEEEEEEecCCCCCeEEEEEeCCCCCCccCCCCC
Q 022541 168 PARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLP 247 (295)
Q Consensus 168 pAr~~V~~A~~~R~~~~~sg~Ilvl~~~~PWk~hl~~lE~e~~~~~~i~fviyp~~~~~~wriq~Vp~~~~sF~~R~~LP 247 (295)
||...|++|+.++ ++-||+|+++|||++|+++||+| ++.+++||+||+ +++||+++||++..+|+.|.|||
T Consensus 189 ~a~~~v~k~I~e~-----~~~iL~ld~~~pw~~~i~eie~e--~~~~~~Fv~fp~--~~aw~l~~Ip~~~~~fe~R~plp 259 (306)
T COG4286 189 RAYALVVKAIAET-----EDVILVLDRFCPWKEHIFEIEAE--IKKDFKFVVFPD--SSAWRLRGIPKDLTRFEVRVPLP 259 (306)
T ss_pred HHHHHHHHHHHhh-----CCcEEEecCCCcHHHHHHHhccc--ccCceEEEEecC--CCceEEEeccCCCCceeecCCCC
Confidence 9999999999986 34499999999999999999998 357999999998 45899999999999999999999
Q ss_pred cccCCCChHHHhhhhCCCCceEeecCCcccccCCHHHHHHHHHHHhc
Q 022541 248 AQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAALK 294 (295)
Q Consensus 248 e~WrGlrdeeL~~vsGI~g~vFvH~sGFigg~kt~egAL~mA~~aL~ 294 (295)
|+||||+++||+++||||||+|||++||||+|+|+|+||+||++||+
T Consensus 260 e~WrGL~geeL~~~sGIpGc~F~Ha~gFig~~kt~E~~lem~~lsl~ 306 (306)
T COG4286 260 EEWRGLRGEELSTVSGIPGCIFCHAGGFIGGNKTREAALEMARLSLK 306 (306)
T ss_pred hhhcccccchhhhhcCCCCeEEEecccceeccccHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999985
No 4
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=58.13 E-value=9.6 Score=26.11 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=16.1
Q ss_pred cccCCHHHHHHHHHHHhc
Q 022541 277 GGNQSYGGALAMARAALK 294 (295)
Q Consensus 277 gg~kt~egAL~mA~~aL~ 294 (295)
+-.+|+|.|++||+.||+
T Consensus 26 t~G~t~eea~~~~~eal~ 43 (48)
T PF03681_consen 26 TQGDTLEEALENAKEALE 43 (48)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHH
Confidence 567999999999999985
No 5
>PHA02094 hypothetical protein
Probab=55.21 E-value=14 Score=28.46 Aligned_cols=42 Identities=21% Similarity=0.502 Sum_probs=26.4
Q ss_pred hhHHHHHHH-----HH------HHHhCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 022541 57 LVYKHFGKE-----LI------AKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 98 (295)
Q Consensus 57 LIykhfG~~-----ii------~~~l~~~~~~~~~~~l~~kvy~~fi~~IDai 98 (295)
+||.|||++ +| ++.|+...-=..+..-|+.-|+.|+.+|-+.
T Consensus 1 miyeh~~~~sfwgs~~~~~m~~~n~l~~t~~l~~~~~k~n~~ye~~~ksig~m 53 (81)
T PHA02094 1 MIYEHFDKNSFWGSILIDGMKLNNKLSNTIMLPSTRKKLNEKYEFFAKSVGAM 53 (81)
T ss_pred CchhhcCccchhHHHHHHHHHHHHhccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 588898876 22 2333322222334455788899999999775
No 6
>COG2404 Predicted phosphohydrolase (DHH superfamily) [General function prediction only]
Probab=45.76 E-value=5.2 Score=39.22 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=22.0
Q ss_pred CCCCCCCCccccc---cC-----CCccccccchhhHHHHHH
Q 022541 32 CYDHHQKGFEEVF---GH-----GFSTKLSSAGLVYKHFGK 64 (295)
Q Consensus 32 rfDHHQr~F~~t~---~~-----~~~~~lSSAGLIykhfG~ 64 (295)
-|||||-+- +|- .. -++++.++||+||+++=+
T Consensus 87 wiDHH~t~~-e~~~e~~~~~v~~~~D~~rcaa~vvy~~l~~ 126 (339)
T COG2404 87 WIDHHKTAN-ETKEEVREAGVSVYVDDSRCAAGVVYEYLKP 126 (339)
T ss_pred Eeccccccc-hhHHHhhhcCcEEEECCcchhhhhhhheecc
Confidence 699999763 211 11 245788899999988654
No 7
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=41.27 E-value=5.2 Score=31.07 Aligned_cols=12 Identities=42% Similarity=0.648 Sum_probs=11.2
Q ss_pred CCChHHHhhhhC
Q 022541 252 GLRDDELSKEAG 263 (295)
Q Consensus 252 GlrdeeL~~vsG 263 (295)
||++++|.+|.|
T Consensus 65 ~lse~~L~~vag 76 (77)
T TIGR03793 65 ELTDEQLDAVAG 76 (77)
T ss_pred CCCHHHHHHhhC
Confidence 999999999987
No 8
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=38.12 E-value=71 Score=26.28 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=27.5
Q ss_pred HHHHhhcccccHHHHHHHHHHhcCc-CCCCcEEEEcCC-CChhhHHHh
Q 022541 159 VRFYVRSWLPARSIVVECIAERYDY-DPSGEIMVLKRF-CPWKLHLFE 204 (295)
Q Consensus 159 v~~~~~~~lpAr~~V~~A~~~R~~~-~~sg~Ilvl~~~-~PWk~hl~~ 204 (295)
+..|.-- +.+-+-|-.+++.++.| |+|+++|++.++ |-|...-..
T Consensus 52 ~~~y~l~-v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~~aSH~~ 98 (105)
T PF11009_consen 52 IPVYYLD-VIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVWHASHWD 98 (105)
T ss_dssp --EEEEE-GGGGHHHHHHHHHHHT----SSEEEEEETTEEEEEEEGGG
T ss_pred ceEEEEE-EEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEEECcccc
Confidence 4444333 44445577889999997 999999999886 557654443
No 9
>PLN02707 Soluble inorganic pyrophosphatase
Probab=35.05 E-value=80 Score=30.16 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=46.7
Q ss_pred CCCCeEEEEEeCCCCCCccC---CCCCcccCCCChH--HHhhhhCCCCceEeecCCcccccCCHHHHHHHHHHHhc
Q 022541 224 RGKQWRVQAVAVSPDRFESR---KPLPAQWRGLRDD--ELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAALK 294 (295)
Q Consensus 224 ~~~~wriq~Vp~~~~sF~~R---~~LPe~WrGlrde--eL~~vsGI~g~vFvH~sGFigg~kt~egAL~mA~~aL~ 294 (295)
.+..|+|-|||++.-.+..= ..||+.+.|+.++ +-=+.-.++..--+-.-||.+++++.+.|++.-+.+.+
T Consensus 174 GE~D~KIIaV~~~Dp~~~~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~~~A~~vI~e~~~ 249 (267)
T PLN02707 174 GELDWKVVAISADDPKASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETNE 249 (267)
T ss_pred CCCCCEEEEEECCCCcccccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCHHHHHHHHHHHHH
Confidence 35679999999875444333 4567766666542 22222234444445567888999999999999887753
No 10
>PRK15008 HTH-type transcriptional regulator RutR; Provisional
Probab=33.85 E-value=35 Score=30.00 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=21.6
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAID 99 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDaiD 99 (295)
|.|.||.|||.. ++.+..+.+.+.+.+.+.+++..
T Consensus 51 s~gtiY~hF~sK-----------e~L~~a~~~~~~~~~~~~~~~~~ 85 (212)
T PRK15008 51 SKTNLLYYFPSK-----------EALYIAVLRQILDIWLAPLKAFR 85 (212)
T ss_pred CHHHHHHHCCCH-----------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 678999999865 11234445555556666665543
No 11
>PF02276 CytoC_RC: Photosynthetic reaction centre cytochrome C subunit; InterPro: IPR003158 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. In the purple bacterium Rhodocyclus gelatinosus (Rhodopseudomonas gelatinosa), a high potential Fe-S protein (HiPIP) acts as an electron donor to reaction centre-bound cyt bc1 under anaerobic conditions in the light, while cyt c acts as a soluble electron carrier under aerobic conditions in the dark in order to re-reduce the oxidized electron donor [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 7PRC_C 6PRC_C 2X5V_C 2X5U_C 2WJM_C 2JBL_C 3T6D_C 3D38_C 2WJN_C 1VRN_C ....
Probab=33.63 E-value=12 Score=36.31 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=13.9
Q ss_pred HhhhhCCCCceEeecCCccccc
Q 022541 258 LSKEAGIPGCVFVHMSGFIGGN 279 (295)
Q Consensus 258 L~~vsGI~g~vFvH~sGFigg~ 279 (295)
.|...|+ +|+|||+|+=...+
T Consensus 221 ~S~sLGV-NCtyCHNsRaF~~w 241 (314)
T PF02276_consen 221 MSNSLGV-NCTYCHNSRAFYDW 241 (314)
T ss_dssp HHHHCT---GGGTBBGGGTT--
T ss_pred HHhhcCC-CcccccCccccccc
Confidence 3677787 99999999966655
No 12
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=30.54 E-value=24 Score=28.65 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=17.7
Q ss_pred CCEEEecCccccCCCCCCCCCCCC
Q 022541 16 LDAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 16 cDiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
=.+++|+|+.|||.+++|-=...|
T Consensus 22 d~v~~N~g~~yn~~tG~Ftap~~G 45 (127)
T PF00386_consen 22 DKVLTNIGNAYNPSTGIFTAPVPG 45 (127)
T ss_dssp -EEEEETTS-EETTTTEEE-SS-E
T ss_pred CEEEEcCCCccEeecCEEecCCCC
Confidence 348899999999999999877766
No 13
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=25.33 E-value=37 Score=28.68 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.1
Q ss_pred CEEEecCccccCCCCCCCCCCCC
Q 022541 17 DAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 17 DiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
.+.+++|+.|||.+++|-=-.+|
T Consensus 29 ~v~~N~g~~yd~~TG~Ftcpv~G 51 (135)
T smart00110 29 KVLYNQQGHYDPRTGKFTCPVPG 51 (135)
T ss_pred EEEECCCCCccCCCCEEECeece
Confidence 36789999999999999888777
No 14
>PF05595 DUF771: Domain of unknown function (DUF771) ; InterPro: IPR008489 This entry is represented by Bacteriophage bIL285, Orf7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of uncharacterised ORFs found in Bacteriophage and Lactococcus lactis.
Probab=23.85 E-value=51 Score=25.97 Aligned_cols=18 Identities=28% Similarity=0.735 Sum_probs=14.5
Q ss_pred EEEEEecCCCCCeEEEEE
Q 022541 216 KYVLYEDDRGKQWRVQAV 233 (295)
Q Consensus 216 ~fviyp~~~~~~wriq~V 233 (295)
.||.||.+.+++|++.+-
T Consensus 60 g~v~yp~~~g~~~~f~a~ 77 (91)
T PF05595_consen 60 GFVYYPKGKGSKWLFNAK 77 (91)
T ss_pred CeEEccCCCCceEEEehH
Confidence 699999855678999864
No 15
>PF04369 Lactococcin: Lactococcin-like family; InterPro: IPR007464 Bacteriocins are produced by bacteria to inhibit the growth of similar or closely related bacterial strains. The class II bacteriocins are small heat-stable proteins for which disulphide bonds are the only modification to the peptide. Lactococcin A and B are class-IId bacteriocins (one-peptide non-pediocin-like bacteriocin) [, ].; GO: 0042742 defense response to bacterium, 0005576 extracellular region
Probab=23.82 E-value=62 Score=24.19 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=17.7
Q ss_pred CCCChHHHhhhhCCCCceEeecCCcc
Q 022541 251 RGLRDDELSKEAGIPGCVFVHMSGFI 276 (295)
Q Consensus 251 rGlrdeeL~~vsGI~g~vFvH~sGFi 276 (295)
+=|+||||+++.| -+--|+-++|+-
T Consensus 8 ~~~sdeeL~~i~G-G~l~~iqs~g~g 32 (60)
T PF04369_consen 8 NILSDEELSKING-GGLPYIQSNGPG 32 (60)
T ss_pred eecCHHHHhhccC-CcceeeeecCcc
Confidence 4489999999987 345666666543
No 16
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.99 E-value=13 Score=33.38 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=26.5
Q ss_pred ccCCCCCCCCCCCCccccccCCCcc-ccccchhhHHH
Q 022541 26 YDPSNDCYDHHQKGFEEVFGHGFST-KLSSAGLVYKH 61 (295)
Q Consensus 26 yDp~~~rfDHHQr~F~~t~~~~~~~-~lSSAGLIykh 61 (295)
..|-..|||-|.+. +.+-+++.+ -|-+.||||||
T Consensus 130 ~~~~l~~~de~~~~--~swyDgYSv~yl~~~GlI~kh 164 (202)
T KOG4457|consen 130 MNPRLLRFDERMQN--LSWYDGYSVLYLDGNGLIYKH 164 (202)
T ss_pred echHHhhHHHHhcc--cccccceeEEEECCCceEEee
Confidence 36778899999988 555555554 67889999999
Done!