Query 022541
Match_columns 295
No_of_seqs 110 out of 349
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:11:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yzt_A Putative uncharacterize 40.3 13 0.00045 26.4 1.9 19 276-294 27-45 (67)
2 2wjn_C Photosynthetic reaction 40.1 13 0.00043 35.1 2.2 31 250-280 62-100 (336)
3 4f3j_A Complement C1Q tumor ne 39.5 8.5 0.00029 31.3 0.8 23 17-39 26-48 (148)
4 1eys_C Photosynthetic reaction 39.0 9.3 0.00032 36.6 1.1 47 245-292 195-254 (382)
5 3ox7_P MH027; urokinase-type p 38.7 7.3 0.00025 22.4 0.2 11 248-258 8-18 (23)
6 3loc_A HTH-type transcriptiona 31.9 20 0.0007 28.5 2.0 34 54-98 51-84 (212)
7 2wjn_C Photosynthetic reaction 30.8 13 0.00044 35.1 0.6 30 249-279 219-256 (336)
8 2wnv_C C1Q chain C, complement 30.5 15 0.0005 29.4 0.8 24 16-39 27-50 (131)
9 3kwr_A Putative RNA-binding pr 29.4 27 0.00092 27.0 2.2 18 277-294 34-51 (97)
10 2wnv_A C1Q chain A, complement 28.7 16 0.00056 29.1 0.9 23 17-39 24-46 (134)
11 1pb6_A Hypothetical transcript 28.5 24 0.00083 28.1 1.9 34 54-98 51-84 (212)
12 2wnv_B C1Q chain B, complement 28.1 17 0.00059 29.2 0.9 24 16-39 26-49 (136)
13 2dsy_A Hypothetical protein TT 27.7 33 0.0011 25.6 2.4 18 277-294 41-58 (87)
14 3on4_A Transcriptional regulat 27.6 29 0.001 27.0 2.2 34 54-98 43-76 (191)
15 3gzi_A Transcriptional regulat 25.2 38 0.0013 27.1 2.5 36 54-100 50-85 (218)
16 2qtq_A Transcriptional regulat 23.5 47 0.0016 26.3 2.7 34 54-98 49-82 (213)
17 3pas_A TETR family transcripti 22.2 38 0.0013 26.3 1.9 12 54-65 41-52 (195)
18 2ka3_A Emilin-1; C1Q-like doma 21.7 28 0.00096 29.0 1.0 27 13-39 33-59 (162)
19 2hyt_A TETR-family transcripti 21.6 52 0.0018 26.3 2.6 12 54-65 45-56 (197)
20 3e7q_A Transcriptional regulat 21.2 40 0.0014 26.7 1.8 33 54-97 47-79 (215)
21 2gfn_A HTH-type transcriptiona 20.9 45 0.0015 27.2 2.1 34 54-98 42-75 (209)
22 3s0r_A De novo designed helica 20.4 53 0.0018 19.9 1.7 13 282-294 3-15 (30)
23 3f0c_A TETR-molecule A, transc 20.3 44 0.0015 26.7 1.9 12 54-65 44-55 (216)
24 2nx4_A Transcriptional regulat 20.3 44 0.0015 26.7 1.9 34 54-98 43-76 (194)
25 1wpn_A Manganese-dependent ino 20.0 1.1E+02 0.0038 25.1 4.4 65 18-88 72-147 (188)
No 1
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=40.26 E-value=13 Score=26.37 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=16.6
Q ss_pred ccccCCHHHHHHHHHHHhc
Q 022541 276 IGGNQSYGGALAMARAALK 294 (295)
Q Consensus 276 igg~kt~egAL~mA~~aL~ 294 (295)
+.-.+|.|.|++||+.||+
T Consensus 27 ~t~G~T~eEa~~~~~eAi~ 45 (67)
T 2yzt_A 27 HTQAQSFEELLRRLQEAIA 45 (67)
T ss_dssp EEEESSHHHHHHHHHHHHH
T ss_pred ceeeCCHHHHHHHHHHHHH
Confidence 4667999999999999985
No 2
>2wjn_C Photosynthetic reaction center cytochrome C subun; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_C* 1r2c_C* 1dxr_C* 2prc_C* 2i5n_C* 2wjm_C* 2x5u_C* 2x5v_C* 3d38_C* 3g7f_C* 3prc_C* 4ac5_C* 5prc_C* 6prc_C* 7prc_C* 3t6e_C* 2jbl_C* 1vrn_C* 3t6d_C*
Probab=40.05 E-value=13 Score=35.14 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=23.7
Q ss_pred cCCCChHHHhh--------hhCCCCceEeecCCcccccC
Q 022541 250 WRGLRDDELSK--------EAGIPGCVFVHMSGFIGGNQ 280 (295)
Q Consensus 250 WrGlrdeeL~~--------vsGI~g~vFvH~sGFigg~k 280 (295)
..+|..+|+.+ ++.-.||.|||+++=.+...
T Consensus 62 L~dls~~ef~rlM~amt~Wvs~~~gCtyCHn~~~Faddd 100 (336)
T 2wjn_C 62 LGNLTEAEFLRTMTAITEWVSPQEGCTYCHDENNLASEA 100 (336)
T ss_dssp STTSBHHHHHHHHHHHHHHHCTTTGGGGTSBTTBTTCCC
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCCCcccccCcccccccc
Confidence 36788898877 55668999999998555544
No 3
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=39.50 E-value=8.5 Score=31.32 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=18.9
Q ss_pred CEEEecCccccCCCCCCCCCCCC
Q 022541 17 DAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 17 DiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
.+++|+|+-||++++||==--.|
T Consensus 26 ~v~~N~G~~yn~sTG~FTaPv~G 48 (148)
T 4f3j_A 26 RVLVNEQGHYDAVTGKFTCQVPG 48 (148)
T ss_dssp EEEECTTCCEETTTTEEECCSCE
T ss_pred eEEECCCCCccCCCCeEECCcce
Confidence 47899999999999988665544
No 4
>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2
Probab=38.99 E-value=9.3 Score=36.61 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=30.1
Q ss_pred CCCc-ccCCCChHHH--------hhhhCCCCceEeecCCcccccC----CHHHHHHHHHHH
Q 022541 245 PLPA-QWRGLRDDEL--------SKEAGIPGCVFVHMSGFIGGNQ----SYGGALAMARAA 292 (295)
Q Consensus 245 ~LPe-~WrGlrdeeL--------~~vsGI~g~vFvH~sGFigg~k----t~egAL~mA~~a 292 (295)
+||. .+..+.+.|. +...|+ +|+|||+|+=.+.+. .++.|--|-+++
T Consensus 195 aLP~~~~~siqqaE~Ty~LM~h~S~sLGV-nCtyCHNsRaF~~w~qstPqr~tA~~girMv 254 (382)
T 1eys_C 195 ALAGSNPASLKQAEWTFGLMMNISDSLGV-GCTSCHNTRAFNDWTQSTPKRTTAWYAIRHV 254 (382)
T ss_dssp SBSSSCCCCHHHHHHHHHHHHHHHHHHTC-CGGGTCCTTCTTCTTSSCHHHHHHHHHHHHH
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHhcCC-CcccccCccccCcccccchHHHHHHHHHHHH
Confidence 4775 3455566665 667797 999999999666532 255555555444
No 5
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=38.70 E-value=7.3 Score=22.36 Aligned_cols=11 Identities=36% Similarity=1.090 Sum_probs=8.1
Q ss_pred cccCCCChHHH
Q 022541 248 AQWRGLRDDEL 258 (295)
Q Consensus 248 e~WrGlrdeeL 258 (295)
-+||||.+-.+
T Consensus 8 cswrglenham 18 (23)
T 3ox7_P 8 CSWRGLENHAM 18 (26)
T ss_pred cccccchhhcc
Confidence 36999987654
No 6
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=31.92 E-value=20 Score=28.48 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=20.2
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 98 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDai 98 (295)
|-|.||+||+.. . +.+..++..+.+.+...++++
T Consensus 51 s~~tlY~~F~sK--e---------~L~~~~~~~~~~~~~~~~~~~ 84 (212)
T 3loc_A 51 SKTNLLYYFPSK--E---------ALYIAVLRQILDIWLAPLKAF 84 (212)
T ss_dssp CHHHHHHHSSSH--H---------HHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHhhhCCCH--H---------HHHHHHHHHHHHHHHHHHHHh
Confidence 568999999864 1 123444555555555555554
No 7
>2wjn_C Photosynthetic reaction center cytochrome C subun; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_C* 1r2c_C* 1dxr_C* 2prc_C* 2i5n_C* 2wjm_C* 2x5u_C* 2x5v_C* 3d38_C* 3g7f_C* 3prc_C* 4ac5_C* 5prc_C* 6prc_C* 7prc_C* 3t6e_C* 2jbl_C* 1vrn_C* 3t6d_C*
Probab=30.78 E-value=13 Score=35.08 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=22.5
Q ss_pred ccCCCChHH--------HhhhhCCCCceEeecCCccccc
Q 022541 249 QWRGLRDDE--------LSKEAGIPGCVFVHMSGFIGGN 279 (295)
Q Consensus 249 ~WrGlrdee--------L~~vsGI~g~vFvH~sGFigg~ 279 (295)
.+..+.+.| +|.-.|+ +|+|||+|+=...+
T Consensus 219 ~~~si~qaE~ty~LM~h~S~sLGV-nCt~CHNsRaF~~w 256 (336)
T 2wjn_C 219 ERRPLSDAYATFALMMSISDSLGT-NCTFCHNAQTFESW 256 (336)
T ss_dssp GSCCTHHHHHHHHHHHHHHHHHTC-CGGGTBCGGGTTCC
T ss_pred CCccHHHHHHHHHHHHHHHhhcCC-CcccccCccccccc
Confidence 455666544 4777797 99999999977766
No 8
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=30.52 E-value=15 Score=29.39 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.3
Q ss_pred CCEEEecCccccCCCCCCCCCCCC
Q 022541 16 LDAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 16 cDiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
=.+++++|+.|||.+++|==...|
T Consensus 27 d~v~~N~G~~yn~~TG~Ftap~~G 50 (131)
T 2wnv_C 27 NAVLTNPQGDYDTSTGKFTCKVPG 50 (131)
T ss_dssp CEEEECTTCCEETTTTEEECSSCE
T ss_pred CeEEECCCCCccCCCCEEEcccCC
Confidence 358899999999999998777666
No 9
>3kwr_A Putative RNA-binding protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS binding protein; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=29.39 E-value=27 Score=27.03 Aligned_cols=18 Identities=28% Similarity=-0.055 Sum_probs=16.0
Q ss_pred cccCCHHHHHHHHHHHhc
Q 022541 277 GGNQSYGGALAMARAALK 294 (295)
Q Consensus 277 gg~kt~egAL~mA~~aL~ 294 (295)
...+|+|.|++||+.||+
T Consensus 34 T~GdT~eEAl~nA~EAL~ 51 (97)
T 3kwr_A 34 TFGASVQVAADNAANALA 51 (97)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHH
Confidence 467999999999999985
No 10
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=28.71 E-value=16 Score=29.14 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=19.8
Q ss_pred CEEEecCccccCCCCCCCCCCCC
Q 022541 17 DAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 17 DiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
.+++++|+-|||.+++|==.-.|
T Consensus 24 ~v~~N~G~~yn~~TG~Ftap~~G 46 (134)
T 2wnv_A 24 TVITNQEEPYQNHSGRFVCTVPG 46 (134)
T ss_dssp EEEEEETSCEETTTTEEECCSCE
T ss_pred EEEECCCCCccCCCCEEECeeCC
Confidence 58899999999999998776655
No 11
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=28.55 E-value=24 Score=28.12 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=20.4
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 98 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDai 98 (295)
|-|.+|+||+.. ++.+..++....+.+...++..
T Consensus 51 s~~t~Y~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~~ 84 (212)
T 1pb6_A 51 SKTNLLYYFPSK-----------EALYIAVLRQILDIWLAPLKAF 84 (212)
T ss_dssp CHHHHHHHSSSH-----------HHHHHHHHHHHHHHHTHHHHHC
T ss_pred ChhHHHHhCCCH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999865 1123445555555555555543
No 12
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=28.07 E-value=17 Score=29.21 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCEEEecCccccCCCCCCCCCCCC
Q 022541 16 LDAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 16 cDiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
=.+++++|+-|||.+++|==.-.|
T Consensus 26 d~v~~N~G~~yn~~TG~Ftap~~G 49 (136)
T 2wnv_B 26 DHVITNMNNNYEPRSGKFTCKVPG 49 (136)
T ss_dssp CEEEEEETSCEETTTTEEECSSCE
T ss_pred CeEEECCCCcccCCCCEEECCcCe
Confidence 358899999999999998776655
No 13
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=27.73 E-value=33 Score=25.60 Aligned_cols=18 Identities=28% Similarity=0.184 Sum_probs=15.6
Q ss_pred cccCCHHHHHHHHHHHhc
Q 022541 277 GGNQSYGGALAMARAALK 294 (295)
Q Consensus 277 gg~kt~egAL~mA~~aL~ 294 (295)
...+|.|.|++||+.||+
T Consensus 41 t~G~T~eEA~~~a~eAl~ 58 (87)
T 2dsy_A 41 ATGKSLKECEANLQAALE 58 (87)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EeeCCHHHHHHHHHHHHH
Confidence 447999999999999985
No 14
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=27.57 E-value=29 Score=27.03 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=21.8
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 98 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDai 98 (295)
|-|.+|+||+.. ++.+..+++.+.+.+.+.++..
T Consensus 43 s~~t~Y~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~~ 76 (191)
T 3on4_A 43 KTASIHYHFPSK-----------EDLGVAVISWHTDKIAAVLSDI 76 (191)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhcCCCH-----------HHHHHHHHHHHHHHHHHHHHhh
Confidence 568999999865 1223555566666666666654
No 15
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=25.16 E-value=38 Score=27.12 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=20.9
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhhhc
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDN 100 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDaiDN 100 (295)
|-|.||+||+.. ++.+..+++...+.+.+.++....
T Consensus 50 s~~t~Y~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~~~~ 85 (218)
T 3gzi_A 50 DPGLIRYYFGSK-----------EKLFSTMIHETAMPVLAQLHKARR 85 (218)
T ss_dssp CTHHHHHHHSSH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999754 112344455555555555555433
No 16
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=23.48 E-value=47 Score=26.31 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=21.6
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 98 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDai 98 (295)
|-|.+|+||+.. ++.+..++..+.+.+.+.++..
T Consensus 49 s~~t~Y~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~~ 82 (213)
T 2qtq_A 49 NSALVKYYFGNK-----------AGLLKALLDRDMENIVKSVDAL 82 (213)
T ss_dssp CHHHHHHHHSSH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHhHhcCCH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999865 1223555566666666666554
No 17
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=22.24 E-value=38 Score=26.32 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=9.8
Q ss_pred cchhhHHHHHHH
Q 022541 54 SAGLVYKHFGKE 65 (295)
Q Consensus 54 SAGLIykhfG~~ 65 (295)
|-|.+|+||+..
T Consensus 41 s~~t~Y~~F~sK 52 (195)
T 3pas_A 41 SPATLYIYYEDK 52 (195)
T ss_dssp CHHHHHHHCSSH
T ss_pred CchHHHHHcCCH
Confidence 568999999865
No 18
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=21.68 E-value=28 Score=28.97 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=21.1
Q ss_pred cccCCEEEecCccccCCCCCCCCCCCC
Q 022541 13 LDDLDAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 13 l~~cDiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
|.-=.+++++|+-|||.+++|==--.|
T Consensus 33 I~Fd~v~~N~G~~yn~~TG~FTaPv~G 59 (162)
T 2ka3_A 33 VPFDRVLLNDGGYYDPETGVFTAPLAG 59 (162)
T ss_dssp CCCCEEEEESSCCEETTTTEEECCCCE
T ss_pred EEeCEEEECCCCceECCCCEEECCCCe
Confidence 333358899999999999998766555
No 19
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=21.60 E-value=52 Score=26.26 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=9.8
Q ss_pred cchhhHHHHHHH
Q 022541 54 SAGLVYKHFGKE 65 (295)
Q Consensus 54 SAGLIykhfG~~ 65 (295)
|-|.+|+||+..
T Consensus 45 s~~tlY~~F~sK 56 (197)
T 2hyt_A 45 TRGALYHHFGDK 56 (197)
T ss_dssp CTTHHHHHHSSH
T ss_pred CHHHHHHHcCCH
Confidence 568999999865
No 20
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=21.24 E-value=40 Score=26.69 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=19.8
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDA 97 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDa 97 (295)
|-|.+|+|||.. ++.+..+++.+.+.+.+.++.
T Consensus 47 s~~t~Y~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~ 79 (215)
T 3e7q_A 47 SVGLINHHYDGK-----------DALVAEAYLAVTGRVMRLLRG 79 (215)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 568899999865 112344455555555555544
No 21
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.90 E-value=45 Score=27.15 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=19.6
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 98 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDai 98 (295)
|-|.||+||+.. . +.+..+++...+.+.+.++..
T Consensus 42 s~gtlY~yF~sK--e---------~L~~a~~~~~~~~~~~~~~~~ 75 (209)
T 2gfn_A 42 STGVLNHYFGSR--H---------ELLLAALRRAGDIQGDRYRTI 75 (209)
T ss_dssp CHHHHHHHTSSH--H---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhcCCCH--H---------HHHHHHHHHHHHHHHHHHHHH
Confidence 568999999864 1 123444455555555555443
No 22
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=20.40 E-value=53 Score=19.87 Aligned_cols=13 Identities=38% Similarity=0.383 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhc
Q 022541 282 YGGALAMARAALK 294 (295)
Q Consensus 282 ~egAL~mA~~aL~ 294 (295)
-|+||+.|.+||+
T Consensus 3 aesaleyaqqale 15 (30)
T 3s0r_A 3 AESALEYAQQALE 15 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHH
Confidence 3667777776663
No 23
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=20.31 E-value=44 Score=26.70 Aligned_cols=12 Identities=17% Similarity=0.301 Sum_probs=9.8
Q ss_pred cchhhHHHHHHH
Q 022541 54 SAGLVYKHFGKE 65 (295)
Q Consensus 54 SAGLIykhfG~~ 65 (295)
|-|.+|+||+..
T Consensus 44 s~~t~Y~~F~sK 55 (216)
T 3f0c_A 44 GKASLYYYFPDK 55 (216)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHcCCH
Confidence 568999999865
No 24
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=20.29 E-value=44 Score=26.70 Aligned_cols=34 Identities=9% Similarity=0.091 Sum_probs=19.3
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 98 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDai 98 (295)
|-|.||+||+.. . +.+..+++.+.+.+...+...
T Consensus 43 s~gtlY~yF~sK--e---------~L~~a~~~~~~~~~~~~~~~~ 76 (194)
T 2nx4_A 43 TNGALSHYFAGK--D---------EILRTSYEHISEATDRRIAEA 76 (194)
T ss_dssp CHHHHHHHCSSH--H---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHhCcCH--H---------HHHHHHHHHHHHHHHHHHHHh
Confidence 568999999764 1 123444455555555555443
No 25
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=20.02 E-value=1.1e+02 Score=25.10 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=33.9
Q ss_pred EEEecCcc------ccCC--CCCCCCCCCCccccccCC--Ccccc-ccchhhHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 022541 18 AVLDVGGV------YDPS--NDCYDHHQKGFEEVFGHG--FSTKL-SSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLA 86 (295)
Q Consensus 18 iVvDVGgv------yDp~--~~rfDHHQr~F~~t~~~~--~~~~l-SSAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~k 86 (295)
|+||.|.. ++-. ....|||+.+-...+.+- ...+. |.+-|||+.|-+ ++.+++.+....+|--
T Consensus 72 i~VD~~~~~r~~~~~~~~~~vivIDHH~~~~~~~~~~~~~~~~~~~St~~lv~~~~~~------~~~~i~~~~A~~l~~g 145 (188)
T 1wpn_A 72 ILVDHNERQQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTATILNKMYKE------NNVKIEKEIAGLMLSA 145 (188)
T ss_dssp EEESCCCGGGSCTTGGGSEEEEEEECSCCCSCCCSSCCEEEECSSSCHHHHHHHHHHH------TTCCCCHHHHHHHHHH
T ss_pred EEEeCCCcccchhhhccCCeEEEECCCCCCCCCCCCCeEEEeccccHHHHHHHHHHHH------cCCCCCHHHHHHHHHH
Confidence 88899852 2111 124999997521112110 01133 556788876532 4556666555666555
Q ss_pred HH
Q 022541 87 VY 88 (295)
Q Consensus 87 vy 88 (295)
|+
T Consensus 146 I~ 147 (188)
T 1wpn_A 146 II 147 (188)
T ss_dssp HH
T ss_pred HH
Confidence 54
Done!