Query 022541
Match_columns 295
No_of_seqs 110 out of 349
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 07:11:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022541.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022541hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fd5a1 a.4.1.9 (A:1-76) Proba 71.6 0.68 4.9E-05 31.7 1.4 37 54-101 40-76 (76)
2 d1pb6a1 a.4.1.9 (A:14-85) Hypo 67.7 0.95 6.9E-05 30.8 1.5 35 54-99 37-71 (72)
3 d2np5a1 a.4.1.9 (A:9-77) Trans 57.3 2.1 0.00015 28.5 1.7 35 54-99 34-68 (69)
4 d2g7sa1 a.4.1.9 (A:3-76) Putat 53.9 2.1 0.00015 29.0 1.2 36 54-100 37-72 (74)
5 d1pk6c_ b.22.1.1 (C:) Compleme 51.9 2 0.00014 32.1 0.8 24 16-39 25-48 (129)
6 d2oi8a1 a.4.1.9 (A:8-86) Putat 50.6 2.6 0.00019 28.8 1.3 33 54-97 42-74 (79)
7 d1t33a1 a.4.1.9 (A:1-88) Putat 45.6 8.8 0.00064 26.5 3.6 12 54-65 44-55 (88)
8 d1pk6b_ b.22.1.1 (B:) Compleme 45.2 2.9 0.00021 31.0 0.9 23 17-39 26-48 (132)
9 d1pk6a_ b.22.1.1 (A:) Compleme 44.7 3 0.00022 30.8 0.8 23 17-39 24-46 (133)
10 d1o91a_ b.22.1.1 (A:) Collagen 43.3 3.2 0.00023 30.9 0.8 23 17-39 24-46 (131)
11 d1v7ba1 a.4.1.9 (A:1-74) Trans 42.1 6 0.00044 26.4 2.1 35 54-99 37-71 (74)
12 d1vi0a1 a.4.1.9 (A:6-77) Hypot 42.0 5.6 0.00041 26.4 1.9 33 54-97 34-66 (72)
13 d1eysc_ a.138.1.2 (C:) Photosy 40.2 5.1 0.00037 35.3 1.8 21 259-280 218-238 (310)
14 d2id6a1 a.4.1.9 (A:1-75) Trans 38.0 15 0.0011 24.3 3.7 12 54-65 36-47 (75)
15 d1gr3a_ b.22.1.1 (A:) Collagen 36.8 4.7 0.00034 29.8 0.8 23 17-39 25-47 (132)
16 d1sgma1 a.4.1.9 (A:5-77) Putat 35.8 15 0.0011 24.1 3.4 14 54-67 35-50 (73)
17 d2i5nc1 a.138.1.2 (C:1-332) Ph 35.4 6.7 0.00049 34.8 1.8 21 258-279 236-256 (332)
18 d2gfna1 a.4.1.9 (A:4-80) Proba 34.5 9.4 0.00069 25.6 2.1 34 54-98 39-72 (77)
19 d1c3ha_ b.22.1.1 (A:) 30 kDa a 34.3 5.4 0.0004 30.0 0.8 23 17-39 27-49 (137)
20 d2o7ta1 a.4.1.9 (A:1-78) Trans 33.8 6.7 0.00049 26.6 1.2 32 54-96 40-71 (78)
21 d2fbqa1 a.4.1.9 (A:2-80) Trans 33.2 9.8 0.00072 25.5 2.0 33 54-97 37-69 (79)
22 d2hyja1 a.4.1.9 (A:8-82) Putat 28.9 7.7 0.00056 26.0 0.8 31 54-95 38-68 (75)
23 d2d6ya1 a.4.1.9 (A:7-74) Putat 28.6 12 0.00087 24.6 1.8 12 54-65 35-46 (68)
24 d1t56a1 a.4.1.9 (A:22-94) Ethr 27.4 14 0.00099 24.3 1.9 12 54-65 36-47 (73)
25 d2gena1 a.4.1.9 (A:6-75) Proba 25.4 16 0.0012 23.8 2.0 33 54-97 33-65 (70)
26 d1h3la_ a.177.1.1 (A:) Sigma f 25.4 47 0.0035 21.5 4.6 42 138-179 3-44 (75)
27 d1rkta1 a.4.1.9 (A:2-82) Hypot 25.2 11 0.00077 25.5 1.0 33 54-97 44-76 (81)
28 d2dsya1 d.304.1.2 (A:3-82) Hyp 24.3 20 0.0014 24.9 2.4 17 278-294 40-56 (80)
29 d1wpna_ c.107.1.1 (A:) Mangane 23.5 39 0.0028 25.8 4.3 52 32-88 93-146 (187)
30 d2hkua1 a.4.1.9 (A:18-87) Puta 22.8 23 0.0017 23.2 2.4 12 54-65 33-44 (70)
31 d2g7ga1 a.4.1.9 (A:9-73) Putat 22.3 11 0.00079 24.8 0.5 12 54-65 32-43 (65)
32 d3c07a1 a.4.1.9 (A:15-89) Puta 21.6 17 0.0012 23.9 1.5 32 54-96 38-69 (75)
No 1
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=71.61 E-value=0.68 Score=31.73 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=27.6
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhhhcC
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNG 101 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDaiDNG 101 (295)
|-|.+|+||+.. ++.+..+++.++..+.+.++.+|.|
T Consensus 40 s~~t~Y~~F~~K-----------e~L~~~~~~~~~~~~~~~l~~~~pG 76 (76)
T d2fd5a1 40 TVGGFYAHFQSK-----------DALMLEAFEQLLGKRRELLGELDPG 76 (76)
T ss_dssp CGGGGGGTCSCH-----------HHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred CccchhhcCCCH-----------HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 458899998865 2234667788888888888888776
No 2
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=67.67 E-value=0.95 Score=30.83 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=25.2
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAID 99 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDaiD 99 (295)
|.|.+|+||+.. ++.+..+++...+.++..+.+++
T Consensus 37 s~~t~y~~F~~K-----------~~l~~~~~~~~~~~~~~~l~a~~ 71 (72)
T d1pb6a1 37 SKTNLLYYFPSK-----------EALYIAVLRQILDIWLAPLKAFR 71 (72)
T ss_dssp CHHHHHHHSSSH-----------HHHHHHHHHHHHHHHTHHHHHCC
T ss_pred ChHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 568999999764 12346677778888888887753
No 3
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=57.33 E-value=2.1 Score=28.45 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=24.4
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAID 99 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDaiD 99 (295)
|-|.||+||+.. ++.+..+++...+.+.+.+++++
T Consensus 34 s~~~iy~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~~~ 68 (69)
T d2np5a1 34 SIGAVQHHFSTK-----------DEMFAFALRTLVDKLLARLSEVE 68 (69)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHHHcc
Confidence 458899999755 12346667777888888777654
No 4
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=53.91 E-value=2.1 Score=28.98 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=24.4
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhhhc
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDN 100 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDaiDN 100 (295)
|-|.+|+||+.. ++.+..+.+.+.+.+.+.+..+++
T Consensus 37 s~~~iY~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~i~~ 72 (74)
T d2g7sa1 37 RNASIHHHFPSK-----------SDLVCKLVSQYRQEAEAGIAELEK 72 (74)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 558899999865 122355566777777777777664
No 5
>d1pk6c_ b.22.1.1 (C:) Complement c1q globular head, C chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.92 E-value=2 Score=32.13 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.1
Q ss_pred CCEEEecCccccCCCCCCCCCCCC
Q 022541 16 LDAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 16 cDiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
-.+.+|+|+-||++++||==...|
T Consensus 25 ~~~~~N~G~~yd~stg~FTaPv~G 48 (129)
T d1pk6c_ 25 NAVLTNPQGDYDTSTGKFTCKVPG 48 (129)
T ss_dssp CEEEECTTCCEETTTTEEECSSCE
T ss_pred CeEEECCCCCccCCCCEEECCcCC
Confidence 347899999999999998776655
No 6
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=50.64 E-value=2.6 Score=28.77 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=22.9
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDA 97 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDa 97 (295)
|-|.+|+||+.. ++.+..++..+++.|.+.+++
T Consensus 42 s~~~~Y~~F~~k-----------~~L~~~~~~~~~~~~~~~~~~ 74 (79)
T d2oi8a1 42 SGPALYRYFDGR-----------DELITELIRDAYRSQADSLRA 74 (79)
T ss_dssp CHHHHHTTCSSH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhhcCCH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 457899998865 123466777778888777754
No 7
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=45.60 E-value=8.8 Score=26.46 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=9.7
Q ss_pred cchhhHHHHHHH
Q 022541 54 SAGLVYKHFGKE 65 (295)
Q Consensus 54 SAGLIykhfG~~ 65 (295)
|-|.+|+||+..
T Consensus 44 s~~~~Y~~F~sK 55 (88)
T d1t33a1 44 NIAAITYYFGSK 55 (88)
T ss_dssp CHHHHHHHHSSH
T ss_pred ChhhhhccCCCH
Confidence 568999999844
No 8
>d1pk6b_ b.22.1.1 (B:) Complement c1q globular head, B chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.22 E-value=2.9 Score=30.98 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=19.4
Q ss_pred CEEEecCccccCCCCCCCCCCCC
Q 022541 17 DAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 17 DiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
.+++|+|+.||++++||-=.-.|
T Consensus 26 ~~~~n~g~~ydtstg~FTaPv~G 48 (132)
T d1pk6b_ 26 HVITNMNNNYEPRSGKFTCKVPG 48 (132)
T ss_dssp EEEEEETSCEETTTTEEECSSCE
T ss_pred EEEECCCCcccCCCCeEEcccCc
Confidence 58899999999999998766554
No 9
>d1pk6a_ b.22.1.1 (A:) Complement c1q globular head, A chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.65 E-value=3 Score=30.81 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=18.9
Q ss_pred CEEEecCccccCCCCCCCCCCCC
Q 022541 17 DAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 17 DiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
.+.+|+|+-||++++||-=--.|
T Consensus 24 ~~~~n~g~~yntStg~FTaPv~G 46 (133)
T d1pk6a_ 24 TVITNQEEPYQNHSGRFVCTVPG 46 (133)
T ss_dssp EEEEEETCCEETTTTEEECCSCE
T ss_pred eEEECCCCCCcCCCCEEEeeEcc
Confidence 37889999999999998765544
No 10
>d1o91a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Mouse (Mus musculus), isoform VIII [TaxId: 10090]}
Probab=43.33 E-value=3.2 Score=30.93 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=19.7
Q ss_pred CEEEecCccccCCCCCCCCCCCC
Q 022541 17 DAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 17 DiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
.+.+|+|+-||++++||-=-..|
T Consensus 24 ~~~~N~g~~yntstg~FTaPvaG 46 (131)
T d1o91a_ 24 KLLYNGRQNYNPQTGIFTCEVPG 46 (131)
T ss_dssp EEEEEETTCEETTTTEEECCSCE
T ss_pred eEEECCCCCeeCCCCEEEcccce
Confidence 46899999999999999777655
No 11
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=42.11 E-value=6 Score=26.44 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=22.8
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAID 99 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDaiD 99 (295)
|-|.+|+||+.. ++.+..+.+.+.+.+.+.+..+.
T Consensus 37 s~~t~Y~~F~~K-----------~~L~~~~~~~~~~~~~~~l~~~~ 71 (74)
T d1v7ba1 37 SKSGLIYHFPSR-----------HALLLGMHELLADDWDKELRDIT 71 (74)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHhhhCCCH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 558899999865 12245556667777776666553
No 12
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=41.99 E-value=5.6 Score=26.37 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=21.7
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDA 97 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDa 97 (295)
|-|.+|+||+.. ++.+..+.+.....+.+.++.
T Consensus 34 s~~~~y~~F~~K-----------~~L~~~~~~~~~~~~~~~~~~ 66 (72)
T d1vi0a1 34 ADGTIYLYFKNK-----------EDILISLFKEKMGQFIERMEE 66 (72)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 458999999865 122455666677777766653
No 13
>d1eysc_ a.138.1.2 (C:) Photosynthetic reaction centre (cytochrome subunit) {Thermochromatium tepidum [TaxId: 1050]}
Probab=40.23 E-value=5.1 Score=35.26 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=16.9
Q ss_pred hhhhCCCCceEeecCCcccccC
Q 022541 259 SKEAGIPGCVFVHMSGFIGGNQ 280 (295)
Q Consensus 259 ~~vsGI~g~vFvH~sGFigg~k 280 (295)
|.-.|+ +|+|||+|+=...+.
T Consensus 218 S~SLGV-NCtfCHNsRaF~~w~ 238 (310)
T d1eysc_ 218 SDSLGV-GCTSCHNTRAFNDWT 238 (310)
T ss_dssp HHHHTC-CGGGTCCTTCTTCTT
T ss_pred HhccCC-CcccccCCcccCccc
Confidence 556686 999999999777665
No 14
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=38.05 E-value=15 Score=24.34 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=9.9
Q ss_pred cchhhHHHHHHH
Q 022541 54 SAGLVYKHFGKE 65 (295)
Q Consensus 54 SAGLIykhfG~~ 65 (295)
|-|-||+||+..
T Consensus 36 s~~~iY~~F~~k 47 (75)
T d2id6a1 36 AKGLIFHYFKNK 47 (75)
T ss_dssp CTHHHHHHHSSH
T ss_pred CHHHHHHHCCCH
Confidence 568899999865
No 15
>d1gr3a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Human (Homo sapiens), isoform X [TaxId: 9606]}
Probab=36.77 E-value=4.7 Score=29.80 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=18.2
Q ss_pred CEEEecCccccCCCCCCCCCCCC
Q 022541 17 DAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 17 DiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
.+.+|+|+-||++++||-=--.|
T Consensus 25 ~~~~n~G~~yntstg~FTaPv~G 47 (132)
T d1gr3a_ 25 KILYNRQQHYDPRTGIFTCQIPG 47 (132)
T ss_dssp EEEECTTCCEETTTTEEECSSCE
T ss_pred eEEECCCCCeeCCCCEEEeeEcc
Confidence 36789999999999988655444
No 16
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=35.83 E-value=15 Score=24.13 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=10.8
Q ss_pred cchhhHHHH-H-HHHH
Q 022541 54 SAGLVYKHF-G-KELI 67 (295)
Q Consensus 54 SAGLIykhf-G-~~ii 67 (295)
|-|-+|+|| + |+-|
T Consensus 35 s~~~iy~~F~~~Ke~L 50 (73)
T d1sgma1 35 PKGSLYHFFPNGKEEL 50 (73)
T ss_dssp CSCHHHHSTTTCHHHH
T ss_pred CHHHHHHHcCCCHHHH
Confidence 568899999 7 6644
No 17
>d2i5nc1 a.138.1.2 (C:1-332) Photosynthetic reaction centre (cytochrome subunit) {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=35.39 E-value=6.7 Score=34.82 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=17.2
Q ss_pred HhhhhCCCCceEeecCCccccc
Q 022541 258 LSKEAGIPGCVFVHMSGFIGGN 279 (295)
Q Consensus 258 L~~vsGI~g~vFvH~sGFigg~ 279 (295)
.|...|+ +|+|||+|+=...+
T Consensus 236 ~S~sLGV-nCtfCHNsRaF~dw 256 (332)
T d2i5nc1 236 ISDSLGT-NCTFCHNAQTFESW 256 (332)
T ss_dssp HHHHHTC-CGGGTBCGGGTTCC
T ss_pred HHHhhCC-CcccccCccccccc
Confidence 5777897 99999999977654
No 18
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=34.47 E-value=9.4 Score=25.56 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=21.4
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 98 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDai 98 (295)
|-|.+|+||+.. ++.+..+++.+.+.+.+.++.+
T Consensus 39 s~~~lY~~F~~K-----------~~L~~~~~~~~~~~~~~~~~~~ 72 (77)
T d2gfna1 39 STGVLNHYFGSR-----------HELLLAALRRAGDIQGDRYRTI 72 (77)
T ss_dssp CHHHHHHHTSSH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999865 1223555566666666666553
No 19
>d1c3ha_ b.22.1.1 (A:) 30 kDa adipocyte complement-related protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.28 E-value=5.4 Score=29.98 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=18.6
Q ss_pred CEEEecCccccCCCCCCCCCCCC
Q 022541 17 DAVLDVGGVYDPSNDCYDHHQKG 39 (295)
Q Consensus 17 DiVvDVGgvyDp~~~rfDHHQr~ 39 (295)
.+.+|+|+-||++++||==-..|
T Consensus 27 ~~~~N~G~~yntStg~FTaPv~G 49 (137)
T d1c3ha_ 27 KIFYNQQNHYDGSTGKFYCNIPG 49 (137)
T ss_dssp EEEECTTCCEETTTTEEECCSCE
T ss_pred eEEECCCCcccCCCCEEEeCcCC
Confidence 36789999999999998655544
No 20
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=33.83 E-value=6.7 Score=26.62 Aligned_cols=32 Identities=6% Similarity=0.024 Sum_probs=19.0
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAID 96 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~ID 96 (295)
|-|.+|+||+.. . +.+..+++.+++.++..+.
T Consensus 40 s~~t~y~~F~sK--e---------~L~~~~~~~~~~~~~~~~~ 71 (78)
T d2o7ta1 40 GVATLYRNFPDR--F---------TLDMACAQYLFNVVISLQL 71 (78)
T ss_dssp CHHHHHHHCSSH--H---------HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH--H---------HHHHHHHHHHHHHHHHHHH
Confidence 568999999866 1 1234445555555555443
No 21
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=33.19 E-value=9.8 Score=25.53 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=20.9
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDA 97 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDa 97 (295)
|-|.+|+||+.. . +.+..+++.++..++..++.
T Consensus 37 s~~s~y~~F~~K--~---------~l~~~~~~~~~~~~~~~~~~ 69 (79)
T d2fbqa1 37 NLAAVNYHFGSK--K---------ALIQAVFSRFLGPFCASLEK 69 (79)
T ss_dssp CHHHHHHHTCSH--H---------HHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHCcCH--H---------HHHHHHHHHHHHHHHHHHHH
Confidence 457899999865 1 22355566666666666643
No 22
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=28.87 E-value=7.7 Score=26.02 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=19.6
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHH
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAI 95 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~I 95 (295)
|-|.+|+|||.. ++.+..+++...+.|.+.+
T Consensus 38 s~~~~Y~~F~~K-----------~~L~~~~~~~~~~~~~~~v 68 (75)
T d2hyja1 38 SKSGVHKHFGTK-----------ETLQISTLDKAFVDFWHRV 68 (75)
T ss_dssp CHHHHHTTCSSH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHH
Confidence 568999999865 1224555566666665554
No 23
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=28.59 E-value=12 Score=24.62 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=9.9
Q ss_pred cchhhHHHHHHH
Q 022541 54 SAGLVYKHFGKE 65 (295)
Q Consensus 54 SAGLIykhfG~~ 65 (295)
|-|.+|+|||..
T Consensus 35 s~~~~Y~~F~~K 46 (68)
T d2d6ya1 35 NKQLIYAYYGNK 46 (68)
T ss_dssp CHHHHHHHHSSH
T ss_pred chhHHHHHCcCH
Confidence 568999999866
No 24
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.40 E-value=14 Score=24.30 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=9.6
Q ss_pred cchhhHHHHHHH
Q 022541 54 SAGLVYKHFGKE 65 (295)
Q Consensus 54 SAGLIykhfG~~ 65 (295)
|-|-+|+||+..
T Consensus 36 s~~t~Y~~F~~K 47 (73)
T d1t56a1 36 SRPTFYFYFPSK 47 (73)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHCcCH
Confidence 558899999865
No 25
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.42 E-value=16 Score=23.75 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=20.5
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDA 97 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDa 97 (295)
|-|-+|+||+.. ++.+..+++...+.+.+.++.
T Consensus 33 s~~t~Y~~F~sK-----------~~L~~~~~~~~~~~~~~~l~~ 65 (70)
T d2gena1 33 SIGSLYHHFGNK-----------ERIHGELYLAGIGQYAALLEA 65 (70)
T ss_dssp CHHHHHHHTCSH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 457899999865 122455566666666665543
No 26
>d1h3la_ a.177.1.1 (A:) Sigma factor SigR {Streptomyces coelicolor a3(2) [TaxId: 100226]}
Probab=25.40 E-value=47 Score=21.51 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 022541 138 ERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAE 179 (295)
Q Consensus 138 ~~~d~~F~~A~~l~~~ef~~~v~~~~~~~lpAr~~V~~A~~~ 179 (295)
.+..++|.+.+.--...+.+.+..+....--|.++|++++-+
T Consensus 3 ~~~~~~f~~~~~~y~~~l~~~~~~~~~d~~~aeDivQd~f~~ 44 (75)
T d1h3la_ 3 AERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAK 44 (75)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345677999888877888888888888888899999988554
No 27
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=25.25 E-value=11 Score=25.54 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=19.8
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHhh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDA 97 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~IDa 97 (295)
|-|.+|+||+.. ++.+..+.+.....+++.++.
T Consensus 44 s~~t~Y~~F~~K-----------~~L~~~~~~~~~~~~~~~l~~ 76 (81)
T d1rkta1 44 SRGGVYLYFSST-----------EEMFRRIIETGLDEGLRKLDK 76 (81)
T ss_dssp CHHHHHTTCSCH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 457899998864 122344555566666666554
No 28
>d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus thermophilus [TaxId: 274]}
Probab=24.25 E-value=20 Score=24.88 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=15.1
Q ss_pred ccCCHHHHHHHHHHHhc
Q 022541 278 GNQSYGGALAMARAALK 294 (295)
Q Consensus 278 g~kt~egAL~mA~~aL~ 294 (295)
..+|.|.|+++|+.||+
T Consensus 40 ~GdT~eEA~~~a~eAl~ 56 (80)
T d2dsya1 40 TGKSLKECEANLQAALE 56 (80)
T ss_dssp EESSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 45999999999999985
No 29
>d1wpna_ c.107.1.1 (A:) Manganese-dependent inorganic pyrophosphatase (family II) {Bacillus subtilis [TaxId: 1423]}
Probab=23.47 E-value=39 Score=25.77 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=27.4
Q ss_pred CCCCCCCCccccccCC--CccccccchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 022541 32 CYDHHQKGFEEVFGHG--FSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVY 88 (295)
Q Consensus 32 rfDHHQr~F~~t~~~~--~~~~lSSAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy 88 (295)
.+|||..+=...+... ...+.||+..|..++-++ .+.+++.+.-..||--|+
T Consensus 93 vIDHH~~~~~~~~~~~~~~~~~~sst~~iv~~l~~~-----~~~~i~~~~A~~L~~gI~ 146 (187)
T d1wpna_ 93 VIDHHRIANFETAEPLYYRAEPVGCTATILNKMYKE-----NNVKIEKEIAGLMLSAII 146 (187)
T ss_dssp EEECSCCCSCCCSSCCEEEECSSSCHHHHHHHHHHH-----TTCCCCHHHHHHHHHHHH
T ss_pred EEecccccccCcccceeeecCccccHHHHHHHHHHH-----hCCCCCHHHHHHHHHHHH
Confidence 3899974311121111 123577878776554333 466666655566555544
No 30
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=22.79 E-value=23 Score=23.23 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=9.9
Q ss_pred cchhhHHHHHHH
Q 022541 54 SAGLVYKHFGKE 65 (295)
Q Consensus 54 SAGLIykhfG~~ 65 (295)
|-|.+|+||+..
T Consensus 33 s~~~~Y~~F~~K 44 (70)
T d2hkua1 33 HPNQVTYYYGSK 44 (70)
T ss_dssp CHHHHHHHHSSH
T ss_pred ChhhHHhcCCCH
Confidence 568999999865
No 31
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=22.30 E-value=11 Score=24.83 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=9.3
Q ss_pred cchhhHHHHHHH
Q 022541 54 SAGLVYKHFGKE 65 (295)
Q Consensus 54 SAGLIykhfG~~ 65 (295)
|-|.+|+||+..
T Consensus 32 s~~~iY~~F~~K 43 (65)
T d2g7ga1 32 QVSSIYHHAKGR 43 (65)
T ss_dssp CHHHHHTTSCHH
T ss_pred cccchhhcCCCH
Confidence 457899999866
No 32
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=21.57 E-value=17 Score=23.86 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=19.2
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHh
Q 022541 54 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAID 96 (295)
Q Consensus 54 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kvy~~fi~~ID 96 (295)
|-|-+|+||+.. . +.+..+++.+...+...++
T Consensus 38 s~~~~y~~F~~k--~---------~L~~~~~~~~~~~~~~~~~ 69 (75)
T d3c07a1 38 SVGNAYYYFAGK--E---------HLIQGFYDRIAAEHRAAVR 69 (75)
T ss_dssp CHHHHHHHCSSH--H---------HHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHCcCH--H---------HHHHHHHHHHHHHHHHHHH
Confidence 457899999865 1 1234555556666555543
Done!