Query 022543
Match_columns 295
No_of_seqs 357 out of 3256
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:20:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10770 peptidyl-prolyl cis-t 99.9 7.2E-26 1.6E-30 212.1 6.5 171 10-182 167-369 (413)
2 cd01526 RHOD_ThiF Member of th 99.9 2.1E-22 4.6E-27 157.3 8.9 109 184-295 7-122 (122)
3 PF13616 Rotamase_3: PPIC-type 99.9 2E-22 4.3E-27 156.1 8.0 94 85-178 11-116 (117)
4 cd01518 RHOD_YceA Member of th 99.9 5.7E-22 1.2E-26 149.6 6.8 96 186-285 3-100 (101)
5 cd01533 4RHOD_Repeat_2 Member 99.9 8.6E-22 1.9E-26 150.7 7.2 100 184-288 9-109 (109)
6 cd01523 RHOD_Lact_B Member of 99.8 1.5E-21 3.3E-26 146.9 7.3 95 187-285 1-99 (100)
7 cd01527 RHOD_YgaP Member of th 99.8 1E-20 2.2E-25 142.1 9.5 97 185-290 2-98 (99)
8 PRK15441 peptidyl-prolyl cis-t 99.8 7E-21 1.5E-25 141.3 8.0 89 88-178 3-92 (93)
9 TIGR02933 nifM_nitrog nitrogen 99.8 4E-21 8.6E-26 168.5 6.3 97 85-181 119-223 (256)
10 PRK00162 glpE thiosulfate sulf 99.8 9.8E-21 2.1E-25 144.6 7.3 101 183-291 3-103 (108)
11 cd01534 4RHOD_Repeat_3 Member 99.8 1.3E-20 2.9E-25 140.5 7.4 94 187-285 1-94 (95)
12 cd01528 RHOD_2 Member of the R 99.8 1.7E-20 3.8E-25 141.5 7.6 99 187-288 2-100 (101)
13 cd01525 RHOD_Kc Member of the 99.8 7.1E-20 1.5E-24 139.0 9.5 96 187-285 1-104 (105)
14 PTZ00356 peptidyl-prolyl cis-t 99.8 7E-20 1.5E-24 141.2 9.0 91 86-176 2-114 (115)
15 cd01444 GlpE_ST GlpE sulfurtra 99.8 4.8E-20 1E-24 137.5 7.7 92 187-285 2-95 (96)
16 PLN02160 thiosulfate sulfurtra 99.8 8.4E-20 1.8E-24 144.9 9.5 103 184-291 14-126 (136)
17 KOG1530 Rhodanese-related sulf 99.8 6.1E-20 1.3E-24 139.3 7.2 104 184-291 22-134 (136)
18 cd01524 RHOD_Pyr_redox Member 99.8 6.8E-20 1.5E-24 135.3 7.4 88 188-285 2-89 (90)
19 cd01447 Polysulfide_ST Polysul 99.8 9.9E-20 2.2E-24 137.5 8.3 97 187-287 1-102 (103)
20 PF00639 Rotamase: PPIC-type P 99.8 1.3E-19 2.9E-24 135.1 8.6 83 94-176 1-94 (95)
21 cd01519 RHOD_HSP67B2 Member of 99.8 1.1E-19 2.4E-24 138.1 8.1 95 188-285 2-105 (106)
22 cd01529 4RHOD_Repeats Member o 99.8 1.3E-19 2.8E-24 135.4 7.6 83 203-285 11-95 (96)
23 cd01521 RHOD_PspE2 Member of t 99.8 2.5E-19 5.5E-24 137.2 8.8 100 185-290 8-109 (110)
24 PRK01415 hypothetical protein; 99.8 1.2E-19 2.5E-24 156.5 7.4 102 184-289 111-214 (247)
25 smart00450 RHOD Rhodanese Homo 99.8 4.6E-19 1E-23 132.2 8.5 88 203-290 3-100 (100)
26 cd01520 RHOD_YbbB Member of th 99.8 1.6E-19 3.5E-24 142.1 6.3 94 187-286 1-126 (128)
27 cd01530 Cdc25 Cdc25 phosphatas 99.8 2.1E-19 4.6E-24 139.9 6.6 101 185-285 2-120 (121)
28 PRK05320 rhodanese superfamily 99.8 7.2E-19 1.6E-23 153.6 10.4 161 102-288 52-217 (257)
29 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 9.1E-19 2E-23 143.0 9.3 106 181-290 32-161 (162)
30 cd01448 TST_Repeat_1 Thiosulfa 99.8 1.2E-18 2.6E-23 135.9 9.3 97 187-287 2-121 (122)
31 cd01522 RHOD_1 Member of the R 99.8 3E-19 6.5E-24 138.4 5.8 97 187-286 1-104 (117)
32 PRK03002 prsA peptidylprolyl i 99.8 3E-19 6.5E-24 159.0 6.5 91 89-181 136-228 (285)
33 PRK07878 molybdopterin biosynt 99.8 8.1E-19 1.8E-23 162.8 9.6 107 184-295 286-392 (392)
34 PRK02998 prsA peptidylprolyl i 99.8 4.2E-19 9.1E-24 157.9 6.8 91 89-181 134-226 (283)
35 cd01449 TST_Repeat_2 Thiosulfa 99.8 1.8E-18 3.8E-23 134.1 8.9 95 187-285 1-117 (118)
36 COG0607 PspE Rhodanese-related 99.8 2E-18 4.4E-23 131.8 8.8 90 203-294 19-109 (110)
37 KOG3259 Peptidyl-prolyl cis-tr 99.8 2.8E-18 6E-23 131.7 9.1 91 85-175 50-161 (163)
38 cd01532 4RHOD_Repeat_1 Member 99.8 1.2E-18 2.6E-23 129.2 6.9 81 203-286 9-92 (92)
39 PRK04405 prsA peptidylprolyl i 99.8 1.4E-18 3.1E-23 155.2 8.0 107 65-181 128-239 (298)
40 PRK10770 peptidyl-prolyl cis-t 99.8 3.9E-19 8.4E-24 166.7 4.4 115 64-180 132-257 (413)
41 PRK07411 hypothetical protein; 99.7 3E-18 6.5E-23 158.7 9.0 109 184-295 281-390 (390)
42 TIGR02981 phageshock_pspE phag 99.7 1.8E-18 4E-23 130.0 5.9 81 203-286 17-97 (101)
43 PF00581 Rhodanese: Rhodanese- 99.7 9.4E-19 2E-23 134.0 4.5 95 188-286 1-112 (113)
44 cd01535 4RHOD_Repeat_4 Member 99.7 2.3E-18 4.9E-23 138.2 6.7 85 203-291 10-94 (145)
45 cd01531 Acr2p Eukaryotic arsen 99.7 2.8E-18 6.1E-23 132.1 5.6 98 186-286 3-111 (113)
46 cd00158 RHOD Rhodanese Homolog 99.7 5.8E-18 1.2E-22 123.9 6.9 81 203-285 9-89 (89)
47 PRK00142 putative rhodanese-re 99.7 5.9E-18 1.3E-22 152.0 8.0 102 184-289 111-214 (314)
48 PRK03095 prsA peptidylprolyl i 99.7 9.9E-18 2.2E-22 149.4 8.6 90 89-180 132-223 (287)
49 PRK10287 thiosulfate:cyanide s 99.7 7.3E-18 1.6E-22 127.2 6.0 81 203-286 19-99 (104)
50 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 7.4E-18 1.6E-22 129.7 4.9 100 185-285 2-112 (113)
51 cd01445 TST_Repeats Thiosulfat 99.7 6.5E-17 1.4E-21 128.7 9.5 100 187-286 1-138 (138)
52 KOG3258 Parvulin-like peptidyl 99.7 4.3E-17 9.3E-22 118.7 7.1 90 85-177 35-131 (133)
53 PRK08762 molybdopterin biosynt 99.7 5.4E-17 1.2E-21 150.1 7.8 100 185-291 3-102 (376)
54 PRK00059 prsA peptidylprolyl i 99.7 2.9E-17 6.2E-22 150.0 5.5 112 65-181 173-290 (336)
55 PLN02723 3-mercaptopyruvate su 99.7 2.9E-16 6.4E-21 142.1 8.9 98 187-288 192-311 (320)
56 COG2897 SseA Rhodanese-related 99.6 1.8E-16 3.8E-21 139.3 6.5 99 187-289 158-277 (285)
57 PRK11493 sseA 3-mercaptopyruva 99.6 5.9E-16 1.3E-20 137.8 9.4 101 186-290 6-132 (281)
58 PRK11493 sseA 3-mercaptopyruva 99.6 1.2E-15 2.6E-20 135.8 8.6 100 188-291 156-277 (281)
59 PRK10788 periplasmic folding c 99.6 2.9E-16 6.3E-21 154.4 4.5 95 84-181 265-361 (623)
60 TIGR03167 tRNA_sel_U_synt tRNA 99.6 4.2E-16 9.1E-21 139.6 5.1 86 205-291 3-119 (311)
61 PRK05597 molybdopterin biosynt 99.6 1.6E-15 3.6E-20 138.9 8.8 81 204-286 274-354 (355)
62 PLN02723 3-mercaptopyruvate su 99.6 2.2E-15 4.7E-20 136.4 9.4 102 185-290 22-148 (320)
63 PRK09629 bifunctional thiosulf 99.6 9E-16 2E-20 149.1 7.2 101 186-290 10-126 (610)
64 PRK12450 foldase protein PrsA; 99.6 4.4E-16 9.5E-21 140.1 4.3 88 89-180 148-244 (309)
65 PRK01326 prsA foldase protein 99.6 1E-15 2.2E-20 137.9 5.6 88 89-180 145-241 (310)
66 PRK09629 bifunctional thiosulf 99.6 4.4E-15 9.5E-20 144.4 9.8 98 186-287 148-264 (610)
67 PRK11784 tRNA 2-selenouridine 99.6 1.1E-15 2.4E-20 138.7 4.7 95 189-289 5-131 (345)
68 COG1054 Predicted sulfurtransf 99.6 9.8E-16 2.1E-20 132.5 3.6 167 94-289 38-215 (308)
69 KOG2017 Molybdopterin synthase 99.5 5.1E-15 1.1E-19 129.9 5.6 109 184-295 316-427 (427)
70 TIGR02925 cis_trans_EpsD pepti 99.5 7.1E-15 1.5E-19 127.3 6.0 111 65-180 116-227 (232)
71 PRK05600 thiamine biosynthesis 99.5 1.1E-14 2.4E-19 133.8 7.1 92 186-282 272-369 (370)
72 cd01446 DSP_MapKP N-terminal r 99.5 3.3E-14 7.2E-19 112.4 7.0 97 187-286 2-126 (132)
73 COG2897 SseA Rhodanese-related 99.3 3.5E-12 7.6E-17 112.2 9.1 107 185-291 11-136 (285)
74 PRK01269 tRNA s(4)U8 sulfurtra 99.3 4.2E-12 9.2E-17 121.0 7.0 73 203-279 406-482 (482)
75 COG0760 SurA Parvulin-like pep 99.2 7.5E-12 1.6E-16 112.0 3.6 95 86-182 165-266 (320)
76 KOG3772 M-phase inducer phosph 99.2 3.8E-11 8.3E-16 105.8 5.9 106 181-286 152-275 (325)
77 KOG1529 Mercaptopyruvate sulfu 99.0 1.1E-09 2.4E-14 94.8 6.1 83 203-286 171-275 (286)
78 KOG1529 Mercaptopyruvate sulfu 98.6 1.9E-07 4.2E-12 81.0 8.3 101 187-291 7-134 (286)
79 COG5105 MIH1 Mitotic inducer, 98.2 1.2E-06 2.6E-11 76.7 2.9 101 182-285 239-356 (427)
80 PF00639 Rotamase: PPIC-type P 97.9 1.1E-06 2.5E-11 65.1 -1.9 88 8-95 4-93 (95)
81 PRK10788 periplasmic folding c 97.9 9.4E-05 2E-09 73.3 10.9 149 27-181 287-476 (623)
82 PF13145 Rotamase_2: PPIC-type 97.9 4.3E-06 9.4E-11 64.0 0.7 89 85-180 18-110 (121)
83 KOG3259 Peptidyl-prolyl cis-tr 97.8 5.4E-06 1.2E-10 64.4 1.0 74 17-91 82-157 (163)
84 PF13616 Rotamase_3: PPIC-type 97.7 6.4E-06 1.4E-10 63.5 0.0 83 13-96 29-114 (117)
85 KOG3258 Parvulin-like peptidyl 97.5 9.6E-05 2.1E-09 54.5 3.6 47 31-80 60-107 (133)
86 PTZ00356 peptidyl-prolyl cis-t 97.2 7.6E-05 1.6E-09 57.3 -0.5 80 15-95 32-113 (115)
87 PRK15441 peptidyl-prolyl cis-t 97.0 0.00049 1.1E-08 50.7 2.3 70 25-96 19-90 (93)
88 TIGR02933 nifM_nitrog nitrogen 96.7 0.00047 1E-08 60.6 0.7 75 20-95 141-217 (256)
89 PRK04405 prsA peptidylprolyl i 96.6 0.0014 3.1E-08 58.8 2.7 72 26-98 160-236 (298)
90 PRK03095 prsA peptidylprolyl i 96.2 0.0037 8.1E-08 55.9 2.8 71 26-97 148-220 (287)
91 COG2603 Predicted ATPase [Gene 95.8 0.0028 6E-08 55.5 0.5 82 203-285 14-127 (334)
92 PRK02998 prsA peptidylprolyl i 95.8 0.0049 1.1E-07 55.0 2.0 71 26-97 150-222 (283)
93 PRK03002 prsA peptidylprolyl i 95.4 0.01 2.2E-07 53.1 2.3 69 27-96 153-223 (285)
94 KOG1093 Predicted protein kina 94.3 0.014 3E-07 55.7 0.3 96 182-285 619-719 (725)
95 PRK00142 putative rhodanese-re 94.0 0.0024 5.1E-08 57.8 -5.3 81 189-275 18-105 (314)
96 PRK01326 prsA foldase protein 93.4 0.067 1.4E-06 48.4 3.1 55 27-84 162-218 (310)
97 TIGR01244 conserved hypothetic 93.0 0.21 4.6E-06 39.3 5.1 82 186-271 14-112 (135)
98 PRK12450 foldase protein PrsA; 92.8 0.091 2E-06 47.5 3.1 68 27-97 165-241 (309)
99 PRK00059 prsA peptidylprolyl i 92.3 0.13 2.8E-06 46.9 3.4 73 25-98 211-287 (336)
100 PF04273 DUF442: Putative phos 85.1 1.1 2.5E-05 33.9 3.4 72 186-266 14-106 (110)
101 COG0760 SurA Parvulin-like pep 84.7 0.49 1.1E-05 41.8 1.5 49 34-82 196-245 (320)
102 KOG1717 Dual specificity phosp 84.6 0.59 1.3E-05 40.8 1.8 92 187-287 6-124 (343)
103 TIGR03167 tRNA_sel_U_synt tRNA 81.3 0.66 1.4E-05 42.0 0.9 70 186-260 137-210 (311)
104 PF09992 DUF2233: Predicted pe 72.3 4.4 9.5E-05 32.9 3.4 41 244-284 98-143 (170)
105 TIGR02925 cis_trans_EpsD pepti 67.4 2.7 5.9E-05 36.0 1.2 58 36-95 164-222 (232)
106 PF03853 YjeF_N: YjeF-related 65.2 12 0.00026 30.5 4.5 32 244-276 23-57 (169)
107 COG3453 Uncharacterized protei 63.4 9.3 0.0002 29.4 3.2 23 245-267 86-108 (130)
108 KOG3636 Uncharacterized conser 63.3 13 0.00029 35.0 4.8 82 204-286 326-428 (669)
109 PF01451 LMWPc: Low molecular 63.2 5.8 0.00013 30.9 2.3 36 249-284 1-41 (138)
110 smart00195 DSPc Dual specifici 57.9 15 0.00033 28.4 3.8 29 244-272 76-107 (138)
111 PLN03050 pyridoxine (pyridoxam 54.8 20 0.00044 31.2 4.4 30 247-277 61-93 (246)
112 TIGR00853 pts-lac PTS system, 52.6 20 0.00042 26.3 3.4 37 246-283 3-43 (95)
113 COG1986 Inosine/xanthosine tri 51.3 19 0.00041 29.5 3.3 42 105-146 109-151 (175)
114 PRK11391 etp phosphotyrosine-p 50.1 21 0.00046 28.2 3.5 38 247-285 3-41 (144)
115 PRK09590 celB cellobiose phosp 50.0 20 0.00044 26.7 3.1 36 247-283 2-41 (104)
116 PLN02727 NAD kinase 49.2 23 0.0005 36.7 4.3 78 185-267 267-364 (986)
117 PRK13696 hypothetical protein; 49.2 25 0.00053 23.7 3.0 30 93-126 4-33 (62)
118 TIGR02689 ars_reduc_gluta arse 49.1 30 0.00066 26.5 4.1 37 247-283 1-38 (126)
119 smart00226 LMWPc Low molecular 47.1 21 0.00046 27.7 3.1 37 249-285 1-38 (140)
120 PRK03941 NTPase; Reviewed 46.7 25 0.00054 29.0 3.4 42 105-146 108-150 (174)
121 cd00127 DSPc Dual specificity 46.7 28 0.00061 26.6 3.7 67 205-271 29-109 (139)
122 PRK10310 PTS system galactitol 46.6 49 0.0011 24.0 4.7 36 248-284 4-44 (94)
123 TIGR00258 inosine/xanthosine t 46.4 26 0.00056 28.6 3.4 42 105-146 103-145 (163)
124 cd05564 PTS_IIB_chitobiose_lic 45.5 25 0.00055 25.6 3.0 35 248-283 1-39 (96)
125 COG2453 CDC14 Predicted protei 45.5 23 0.00051 29.1 3.2 29 243-271 102-133 (180)
126 COG0162 TyrS Tyrosyl-tRNA synt 44.8 18 0.0004 33.9 2.6 39 248-287 32-80 (401)
127 COG0062 Uncharacterized conser 44.4 41 0.00088 28.5 4.4 32 246-278 49-83 (203)
128 PF02302 PTS_IIB: PTS system, 44.3 29 0.00062 24.5 3.2 31 248-279 1-36 (90)
129 cd05565 PTS_IIB_lactose PTS_II 43.6 27 0.00058 25.9 2.9 36 248-284 2-41 (99)
130 PRK10499 PTS system N,N'-diace 43.2 28 0.00061 26.0 3.0 26 247-272 4-33 (106)
131 KOG0333 U5 snRNP-like RNA heli 42.9 31 0.00068 33.5 3.8 36 245-281 516-551 (673)
132 PRK10126 tyrosine phosphatase; 42.6 33 0.00072 27.1 3.6 38 247-285 3-41 (147)
133 PRK05074 inosine/xanthosine tr 42.4 31 0.00068 28.3 3.4 42 105-146 108-150 (173)
134 COG2518 Pcm Protein-L-isoaspar 42.1 29 0.00062 29.5 3.2 44 243-286 70-135 (209)
135 KOG0330 ATP-dependent RNA heli 41.2 40 0.00087 31.5 4.1 38 245-283 299-336 (476)
136 PRK03114 NTPase; Reviewed 41.2 34 0.00073 28.0 3.4 42 105-146 104-146 (169)
137 PLN03049 pyridoxine (pyridoxam 40.0 40 0.00087 32.3 4.2 30 247-277 60-92 (462)
138 PF00782 DSPc: Dual specificit 38.6 44 0.00095 25.4 3.6 28 244-271 71-101 (133)
139 PRK10565 putative carbohydrate 37.4 51 0.0011 32.0 4.6 33 244-277 58-93 (508)
140 cd05567 PTS_IIB_mannitol PTS_I 37.4 41 0.00089 23.9 3.0 37 247-284 1-42 (87)
141 cd00133 PTS_IIB PTS_IIB: subun 37.3 42 0.0009 22.8 3.0 21 248-268 1-22 (84)
142 PLN02918 pyridoxine (pyridoxam 37.1 48 0.001 32.4 4.3 30 247-277 136-168 (544)
143 cd00079 HELICc Helicase superf 34.3 64 0.0014 23.9 3.9 36 245-281 27-62 (131)
144 PF05225 HTH_psq: helix-turn-h 33.3 61 0.0013 20.0 2.9 26 104-129 4-30 (45)
145 PRK13530 arsenate reductase; P 32.7 81 0.0018 24.5 4.3 36 247-282 4-40 (133)
146 PTZ00393 protein tyrosine phos 32.2 19 0.0004 31.3 0.5 29 244-272 168-198 (241)
147 PTZ00242 protein tyrosine phos 30.6 68 0.0015 26.0 3.6 27 244-270 96-124 (166)
148 cd00115 LMWPc Substituted upda 30.4 48 0.001 25.8 2.7 37 248-284 2-40 (141)
149 COG1440 CelA Phosphotransferas 30.0 65 0.0014 24.0 3.0 22 247-268 2-23 (102)
150 TIGR00197 yjeF_nterm yjeF N-te 29.5 99 0.0021 26.0 4.6 34 243-277 42-78 (205)
151 PF00289 CPSase_L_chain: Carba 29.1 58 0.0012 24.5 2.7 28 250-277 5-32 (110)
152 PF03162 Y_phosphatase2: Tyros 29.0 50 0.0011 26.8 2.6 28 245-272 90-119 (164)
153 cd05566 PTS_IIB_galactitol PTS 28.4 71 0.0015 22.5 3.0 24 248-271 2-30 (89)
154 PRK07199 phosphoribosylpyropho 27.2 91 0.002 28.0 4.1 33 245-277 210-245 (301)
155 COG0394 Wzb Protein-tyrosine-p 26.9 80 0.0017 24.8 3.3 39 247-285 3-42 (139)
156 PF01931 NTPase_I-T: Protein o 26.5 48 0.001 27.1 2.0 42 105-146 105-147 (168)
157 TIGR02691 arsC_pI258_fam arsen 26.4 80 0.0017 24.3 3.2 35 249-283 1-36 (129)
158 cd05563 PTS_IIB_ascorbate PTS_ 25.8 86 0.0019 21.9 3.1 19 249-267 2-21 (86)
159 PRK04923 ribose-phosphate pyro 25.6 1.1E+02 0.0024 27.8 4.4 33 245-277 216-251 (319)
160 PF13344 Hydrolase_6: Haloacid 25.3 1E+02 0.0022 22.6 3.4 29 244-272 28-57 (101)
161 TIGR00614 recQ_fam ATP-depende 25.2 85 0.0018 30.0 3.8 37 245-282 225-261 (470)
162 COG3414 SgaB Phosphotransferas 25.0 1.1E+02 0.0023 22.4 3.4 26 247-272 2-32 (93)
163 COG0513 SrmB Superfamily II DN 25.0 77 0.0017 30.8 3.5 34 248-282 275-308 (513)
164 PRK04837 ATP-dependent RNA hel 24.9 97 0.0021 29.0 4.1 35 246-281 255-289 (423)
165 PRK11057 ATP-dependent DNA hel 24.8 89 0.0019 31.1 3.9 37 245-282 235-271 (607)
166 PF02254 TrkA_N: TrkA-N domain 24.4 1.2E+02 0.0027 22.1 3.9 29 250-279 1-29 (116)
167 PF00899 ThiF: ThiF family; I 24.3 1.2E+02 0.0025 23.3 3.8 37 249-285 4-40 (135)
168 PF02697 DUF217: Uncharacteriz 24.1 1.1E+02 0.0024 21.1 3.1 31 94-127 3-33 (71)
169 PF01488 Shikimate_DH: Shikima 24.1 1.3E+02 0.0028 23.2 4.0 34 246-280 12-45 (135)
170 TIGR00201 comF comF family pro 24.1 1.2E+02 0.0027 24.9 4.2 33 245-277 151-186 (190)
171 PRK04537 ATP-dependent RNA hel 23.9 96 0.0021 30.6 4.0 36 245-281 256-291 (572)
172 KOG0685 Flavin-containing amin 23.5 1.1E+02 0.0024 29.4 4.0 35 245-280 20-54 (498)
173 COG4822 CbiK Cobalamin biosynt 23.5 1.3E+02 0.0028 25.8 4.0 34 244-277 135-173 (265)
174 PF07755 DUF1611: Protein of u 23.4 2.3E+02 0.005 25.6 5.9 72 191-286 78-156 (301)
175 PF04218 CENP-B_N: CENP-B N-te 23.3 84 0.0018 20.1 2.3 23 107-129 14-36 (53)
176 COG2519 GCD14 tRNA(1-methylade 23.3 44 0.00095 29.3 1.3 34 243-276 185-218 (256)
177 PF04122 CW_binding_2: Putativ 23.3 1E+02 0.0023 21.9 3.1 36 245-283 49-84 (92)
178 PRK11192 ATP-dependent RNA hel 23.2 1.2E+02 0.0026 28.5 4.3 37 245-282 244-280 (434)
179 TIGR01587 cas3_core CRISPR-ass 23.1 1E+02 0.0022 28.0 3.7 38 244-281 220-258 (358)
180 PRK11776 ATP-dependent RNA hel 23.1 1E+02 0.0022 29.3 3.9 37 245-282 241-277 (460)
181 COG0514 RecQ Superfamily II DN 23.1 86 0.0019 31.1 3.3 38 244-282 228-265 (590)
182 PF13399 LytR_C: LytR cell env 23.0 1.4E+02 0.0031 21.0 3.8 27 247-273 4-32 (90)
183 PRK13354 tyrosyl-tRNA syntheta 22.7 82 0.0018 29.7 3.1 42 244-286 29-80 (410)
184 PF05706 CDKN3: Cyclin-depende 22.7 63 0.0014 26.4 2.0 29 242-270 129-159 (168)
185 PF14572 Pribosyl_synth: Phosp 22.5 1.5E+02 0.0033 24.6 4.2 33 245-277 82-117 (184)
186 PF02863 Arg_repressor_C: Argi 22.4 1.2E+02 0.0027 20.6 3.2 29 240-268 41-69 (70)
187 PF02609 Exonuc_VII_S: Exonucl 22.3 98 0.0021 19.8 2.5 28 101-128 4-32 (53)
188 PRK01170 phosphopantetheine ad 22.3 1.5E+02 0.0033 27.0 4.5 42 105-146 256-298 (322)
189 PF02590 SPOUT_MTase: Predicte 21.7 1.1E+02 0.0024 24.6 3.2 46 240-285 61-111 (155)
190 PF01476 LysM: LysM domain; I 21.7 63 0.0014 19.2 1.5 17 112-128 3-19 (44)
191 PRK02458 ribose-phosphate pyro 21.2 1.3E+02 0.0029 27.3 4.1 33 245-277 217-252 (323)
192 TIGR01389 recQ ATP-dependent D 21.1 1.1E+02 0.0024 30.1 3.9 36 246-282 224-259 (591)
193 smart00012 PTPc_DSPc Protein t 20.8 1.2E+02 0.0026 21.4 3.1 16 245-260 38-54 (105)
194 smart00404 PTPc_motif Protein 20.8 1.2E+02 0.0026 21.4 3.1 16 245-260 38-54 (105)
195 PF00156 Pribosyltran: Phospho 20.7 2E+02 0.0043 21.3 4.4 32 244-275 86-120 (125)
196 COG0278 Glutaredoxin-related p 20.6 1.5E+02 0.0032 22.1 3.4 48 245-294 13-74 (105)
No 1
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.92 E-value=7.2e-26 Score=212.12 Aligned_cols=171 Identities=17% Similarity=0.227 Sum_probs=148.4
Q ss_pred chhhhhccccccccccccCcchhhhccCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCCCCCC----
Q 022543 10 SPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPG---- 84 (295)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~~~~~---- 84 (295)
+..+++.++......+.+++.+..+ .+|+.+ +.||+++. +.+||.+||+..+.+.++|+.+.|.+++|.++.+
T Consensus 167 ~~~s~~~~~~~~~~a~~l~~~l~~g-~~F~~lA~~yS~~~~-a~~gGdlg~~~~~~l~~~~~~~~~~l~~G~is~Pi~t~ 244 (413)
T PRK10770 167 ENPTQDQVDEAESQARSIVDQARNG-ADFGKLAIAYSADQQ-ALKGGQMGWGRIQELPGLFAQALSTAKKGDIVGPIRSG 244 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCcc-cccCCcCCccccccccHHHHHHHHhCCCCCCCCcEECC
Confidence 3456666667777788888888776 599999 99999986 7899999999999999999999999988765541
Q ss_pred ----------CC-------CceEEEeeEEeccc-------hHHHHHHHHHHhCCCC-cHHHHHHHhCCCC-CccCCCccc
Q 022543 85 ----------GG-------DREILVQHLLVKED-------DLNLLSELQRRVSQGK-DLSDLAVEHSICP-SKGEGGMLG 138 (295)
Q Consensus 85 ----------~~-------~~~~~~~~Il~~~~-------~~~~a~~i~~~i~~g~-~F~~~a~~~S~d~-~~~~gG~lg 138 (295)
.+ .++++++|||+++. ++++|++++.+|.+|. +|+++|++||+|+ ++.+||++|
T Consensus 245 ~GyhIikl~~~~~~~~~~~~~e~~~~hIli~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~~A~~~S~d~~s~~~gG~lg 324 (413)
T PRK10770 245 VGFHILKVNDLRGESQNISVTEVHARHILLKPSPIMTDEQARAKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLG 324 (413)
T ss_pred CceEEEEEeeeccccccchHHhhhhhheEECCCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCCChHhhCCcCC
Confidence 11 23699999999863 4677999999999996 9999999999999 899999999
Q ss_pred ceeCCCCcHHHHHHHhcCCCCcee-eeeecCceeeeehhhhhhhh
Q 022543 139 WVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREAS 182 (295)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~g~is-pv~~~~G~~ii~v~~~~~~~ 182 (295)
|+..+.++|+|..++++|++|++| |+.+++||||+++++.+...
T Consensus 325 ~~~~~~~~~~~~~~~~~l~~GeiS~pv~t~~g~~ii~v~~~~~~~ 369 (413)
T PRK10770 325 WATPDIFDPAFRDALMRLNKGQISAPVHSSFGWHLIELLDTRQVD 369 (413)
T ss_pred ccCccccCHHHHHHHHcCCCCCcCCcEEcCCeEEEEEEeecccCC
Confidence 999999999999999999999999 99999999999998876543
No 2
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.87 E-value=2.1e-22 Score=157.26 Aligned_cols=109 Identities=28% Similarity=0.494 Sum_probs=93.1
Q ss_pred ccccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCc------cccCCCCCcEEEEeCCCh
Q 022543 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI------TVKFDPQKDTYVMCHHGM 257 (295)
Q Consensus 184 ~~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~------~~~~~~~~~iv~~C~~g~ 257 (295)
...++++++.+++.+. .+..+||+|++.||..||||||+|+|+..+..+...+ ...++++++||+||++|.
T Consensus 7 ~~~is~~el~~~~~~~---~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~ 83 (122)
T cd01526 7 EERVSVKDYKNILQAG---KKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAELKSLQELPLDNDKDSPIYVVCRRGN 83 (122)
T ss_pred ccccCHHHHHHHHhCC---CCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhhhhhhhhcccccCCCCcEEEECCCCC
Confidence 4468889998888653 4578999999999999999999999998876543221 112478999999999999
Q ss_pred hHHHHHHHHHHcCC-CCeEEecchHHHcccccCCCCCCC
Q 022543 258 RSLQVAQWLQTQGF-RRVFNVSGGIHAYATKVDPSIPTY 295 (295)
Q Consensus 258 rs~~a~~~L~~~G~-~~v~~l~GG~~~W~~~~~p~~p~~ 295 (295)
||..++..|+..|| .+|++++||+.+|..+.++.+|.|
T Consensus 84 rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~~~~~ 122 (122)
T cd01526 84 DSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFPLY 122 (122)
T ss_pred cHHHHHHHHHHcCCccceeeecchHHHHHHHhCccCCCC
Confidence 99999999999999 799999999999999999999987
No 3
>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A.
Probab=99.87 E-value=2e-22 Score=156.08 Aligned_cols=94 Identities=30% Similarity=0.560 Sum_probs=84.4
Q ss_pred CCCceEEEeeEEeccc---------hHHHHHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCccccee-CCCCcHHHHHHH
Q 022543 85 GGDREILVQHLLVKED---------DLNLLSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVR-KGQLVPEFEEVA 153 (295)
Q Consensus 85 ~~~~~~~~~~Il~~~~---------~~~~a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~-~~~~~~~~~~~~ 153 (295)
..+++|+++||+|+.. ++++|++|+++|++|++|+++|++||+|+ ++.+||++||++ .+.++++|.+++
T Consensus 11 ~~~~~v~~~~I~i~~~~~~~~~~~~ak~~a~~i~~~l~~G~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~ 90 (117)
T PF13616_consen 11 QAPDEVKVSHILIPVPDASSRSKEEAKKKADSILKQLKSGADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAA 90 (117)
T ss_dssp GE--EEEEEEEEESS-----------HHHHHHHHHHHHCTCCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHH
T ss_pred CCcCeEEEEEEEEeccccccchhHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHH
Confidence 4667999999999962 47889999999999999999999999999 799999999999 899999999999
Q ss_pred hcCCCCcee-eeeecCceeeeehhhh
Q 022543 154 FTTPLNKVA-RCKTKFGWHLLQVLSE 178 (295)
Q Consensus 154 ~~l~~g~is-pv~~~~G~~ii~v~~~ 178 (295)
+.|++|++| |++++.||||+++.++
T Consensus 91 ~~l~~G~is~~v~s~~G~hIikv~dr 116 (117)
T PF13616_consen 91 FSLKVGEISGPVESPNGYHIIKVTDR 116 (117)
T ss_dssp HHS-TTECTCEEEETTEEEEEEEEEE
T ss_pred HcCCCCCCCCeEEECCEEEEEEEEee
Confidence 999999999 9999999999998765
No 4
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.86 E-value=5.7e-22 Score=149.61 Aligned_cols=96 Identities=24% Similarity=0.467 Sum_probs=80.7
Q ss_pred ccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCc--cccCCCCCcEEEEeCCChhHHHHH
Q 022543 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVKFDPQKDTYVMCHHGMRSLQVA 263 (295)
Q Consensus 186 ~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~--~~~~~~~~~iv~~C~~g~rs~~a~ 263 (295)
.++++++.+++.. .+..+||||++.||..||||||+|+|+..+......+ ...++++++||+||++|.||..++
T Consensus 3 ~is~~~l~~~~~~----~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~rs~~a~ 78 (101)
T cd01518 3 YLSPAEWNELLED----PEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDLLKGKKVLMYCTGGIRCEKAS 78 (101)
T ss_pred cCCHHHHHHHHcC----CCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhhhcCCCEEEEECCCchhHHHHH
Confidence 4778888888864 4678999999999999999999999998764321111 112378899999999999999999
Q ss_pred HHHHHcCCCCeEEecchHHHcc
Q 022543 264 QWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 264 ~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
..|+..||+||++|+||+.+|.
T Consensus 79 ~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 79 AYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred HHHHHhCCcceeeechhHHHHh
Confidence 9999999999999999999996
No 5
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.85 E-value=8.6e-22 Score=150.73 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=83.3
Q ss_pred ccccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHH
Q 022543 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA 263 (295)
Q Consensus 184 ~~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~ 263 (295)
...++++++.+.+... ....+||+|++.||..||||||+|+|+..+......+. .+++++||+||.+|.||..++
T Consensus 9 ~~~i~~~~l~~~~~~~---~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~--~~~~~~ivv~C~~G~rs~~a~ 83 (109)
T cd01533 9 TPSVSADELAALQARG---APLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELA--PDPRTPIVVNCAGRTRSIIGA 83 (109)
T ss_pred CCcCCHHHHHHHHhcC---CCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcC--CCCCCeEEEECCCCchHHHHH
Confidence 3568889999888653 34689999999999999999999999988754322221 246789999999999999999
Q ss_pred HHHHHcCCCC-eEEecchHHHccccc
Q 022543 264 QWLQTQGFRR-VFNVSGGIHAYATKV 288 (295)
Q Consensus 264 ~~L~~~G~~~-v~~l~GG~~~W~~~~ 288 (295)
..|+..||+| |++|+||+.+|...+
T Consensus 84 ~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 84 QSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred HHHHHCCCCcceeEecCCHHHHHhcC
Confidence 9999999988 999999999998653
No 6
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.85 E-value=1.5e-21 Score=146.93 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=80.2
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCC----CCccccCCCCCcEEEEeCCChhHHHH
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG----PDITVKFDPQKDTYVMCHHGMRSLQV 262 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~----~~~~~~~~~~~~iv~~C~~g~rs~~a 262 (295)
++++++.+++.+. .+.++||||++.||..||||||+|+|+..+.... ......++++++||+||.+|.||..+
T Consensus 1 is~~el~~~l~~~---~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~a 77 (100)
T cd01523 1 LDPEDLYARLLAG---QPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQLPDDQEVTVICAKEGSSQFV 77 (100)
T ss_pred CCHHHHHHHHHcC---CCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhhCCCCCeEEEEcCCCCcHHHH
Confidence 4567888888763 4578999999999999999999999998764321 12234568899999999999999999
Q ss_pred HHHHHHcCCCCeEEecchHHHcc
Q 022543 263 AQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 263 ~~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
+..|+..||+ +++|.||+.+|.
T Consensus 78 a~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 78 AELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHHHHHcCce-eEEeCCcHHhhc
Confidence 9999999998 999999999996
No 7
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.84 E-value=1e-20 Score=142.14 Aligned_cols=97 Identities=27% Similarity=0.469 Sum_probs=84.5
Q ss_pred cccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHH
Q 022543 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 264 (295)
Q Consensus 185 ~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~ 264 (295)
..++++++.+.+.. +..+||+|++.+|..||||||+|+|+..+... ...++++++||+||++|.+|..++.
T Consensus 2 ~~i~~~el~~~~~~-----~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~----~~~~~~~~~iv~~c~~g~~s~~~~~ 72 (99)
T cd01527 2 TTISPNDACELLAQ-----GAVLVDIREPDEYLRERIPGARLVPLSQLESE----GLPLVGANAIIFHCRSGMRTQQNAE 72 (99)
T ss_pred CccCHHHHHHHHHC-----CCEEEECCCHHHHHhCcCCCCEECChhHhccc----ccCCCCCCcEEEEeCCCchHHHHHH
Confidence 35788899888765 26899999999999999999999999887542 1236789999999999999999999
Q ss_pred HHHHcCCCCeEEecchHHHcccccCC
Q 022543 265 WLQTQGFRRVFNVSGGIHAYATKVDP 290 (295)
Q Consensus 265 ~L~~~G~~~v~~l~GG~~~W~~~~~p 290 (295)
.|.+.||.+|++|+||+.+|...+.|
T Consensus 73 ~L~~~g~~~v~~l~gG~~~W~~~~~~ 98 (99)
T cd01527 73 RLAAISAGEAYVLEGGLDAWKAAGLP 98 (99)
T ss_pred HHHHcCCccEEEeeCCHHHHHHCcCC
Confidence 99999999999999999999987665
No 8
>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional
Probab=99.84 E-value=7e-21 Score=141.25 Aligned_cols=89 Identities=40% Similarity=0.756 Sum_probs=83.1
Q ss_pred ceEEEeeEEeccchHHHHHHHHHHhCCCCcHHHHHHHhCCCCCccCCCcccceeCCCCcHHHHHHHhcCCCCcee-eeee
Q 022543 88 REILVQHLLVKEDDLNLLSELQRRVSQGKDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT 166 (295)
Q Consensus 88 ~~~~~~~Il~~~~~~~~a~~i~~~i~~g~~F~~~a~~~S~d~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~g~is-pv~~ 166 (295)
..++++||++..+++ |++++++|++|++|+++|++||+|+++..||+|||+..++++++|.++++.|++|++| |+++
T Consensus 3 ~~~~~~~I~~~~~~~--A~~i~~~l~~g~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~f~~a~~~l~~G~vs~Pi~t 80 (93)
T PRK15441 3 KTAAALHILVKEEKL--ALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHT 80 (93)
T ss_pred CceEEEEEEECCHHH--HHHHHHHHHCCCCHHHHHHHhCCCchhhcCccceeecccccCHHHHHHHHhCCCCCcCCcEEc
Confidence 468999999987755 9999999999999999999999999777999999999999999999999999999999 9999
Q ss_pred cCceeeeehhhh
Q 022543 167 KFGWHLLQVLSE 178 (295)
Q Consensus 167 ~~G~~ii~v~~~ 178 (295)
+.||||++++++
T Consensus 81 ~~G~hIlkv~~r 92 (93)
T PRK15441 81 QFGYHIIKVLYR 92 (93)
T ss_pred CCEEEEEEEEec
Confidence 999999998764
No 9
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=99.83 E-value=4e-21 Score=168.52 Aligned_cols=97 Identities=30% Similarity=0.586 Sum_probs=87.3
Q ss_pred CCCceEEEeeEEeccc------hHHHHHHHHHHhCCC-CcHHHHHHHhCCCCCccCCCcccceeCCCCcHHHHHHHhcCC
Q 022543 85 GGDREILVQHLLVKED------DLNLLSELQRRVSQG-KDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP 157 (295)
Q Consensus 85 ~~~~~~~~~~Il~~~~------~~~~a~~i~~~i~~g-~~F~~~a~~~S~d~~~~~gG~lg~~~~~~~~~~~~~~~~~l~ 157 (295)
..++.++++|||++.. ++++|++++++|++| .+|+++|++||+|+++.+||+|||++.+.++|+|.+++++|+
T Consensus 119 ~~~e~~~~~hIli~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~sa~~GGdlG~~~~~~l~~~~~~~l~~L~ 198 (256)
T TIGR02933 119 KRPEQRLTRHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGLLGWVSRGLLYPQLDAALFQLA 198 (256)
T ss_pred CCCCeEEEEEEEEECCcccHHHHHHHHHHHHHHHHhCcccHHHHHHHhCCCCccccCCccCCcCCCccChHHHHHHHcCC
Confidence 4567888999999852 345688999999987 599999999999998899999999999999999999999999
Q ss_pred CCcee-eeeecCceeeeehhhhhhh
Q 022543 158 LNKVA-RCKTKFGWHLLQVLSEREA 181 (295)
Q Consensus 158 ~g~is-pv~~~~G~~ii~v~~~~~~ 181 (295)
+|++| ||.++.||||+++.+.++.
T Consensus 199 ~G~vS~Pi~s~~G~hIlkl~~~~~~ 223 (256)
T TIGR02933 199 EGELSPPIESEIGWHLLLCEAIRPA 223 (256)
T ss_pred CCCcCCceeeCCeEEEEEEeeecCC
Confidence 99999 9999999999999887664
No 10
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.83 E-value=9.8e-21 Score=144.60 Aligned_cols=101 Identities=31% Similarity=0.542 Sum_probs=87.8
Q ss_pred hccccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHH
Q 022543 183 LLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQV 262 (295)
Q Consensus 183 ~~~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a 262 (295)
.+..++++++.+.+.+ ....+||+|++.+|..||||||+|+|+..+..+ +..+++++++++||.+|.+|..+
T Consensus 3 ~~~~is~~el~~~l~~----~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~----~~~~~~~~~ivv~c~~g~~s~~a 74 (108)
T PRK00162 3 QFECINVEQAHQKLQE----GGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAF----MRQADFDTPVMVMCYHGNSSQGA 74 (108)
T ss_pred CccccCHHHHHHHHHc----CCCEEEEcCCHHHHhcCCCCCCeECCHHHHHHH----HHhcCCCCCEEEEeCCCCCHHHH
Confidence 3456888999998865 346899999999999999999999999877543 33467899999999999999999
Q ss_pred HHHHHHcCCCCeEEecchHHHcccccCCC
Q 022543 263 AQWLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 263 ~~~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
+..|+..||+||++++||+.+|...+.|.
T Consensus 75 ~~~L~~~G~~~v~~l~GG~~~w~~~~~~~ 103 (108)
T PRK00162 75 AQYLLQQGFDVVYSIDGGFEAWRRTFPAE 103 (108)
T ss_pred HHHHHHCCchheEEecCCHHHHHhcCCCc
Confidence 99999999999999999999999887764
No 11
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.83 E-value=1.3e-20 Score=140.51 Aligned_cols=94 Identities=27% Similarity=0.395 Sum_probs=76.9
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHHHH
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 266 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~~L 266 (295)
++++++.+++.+.. ....+||+|++.||..||||||+|+|+..+......+.. .++++||+||.+|.||..++..|
T Consensus 1 is~~~l~~~~~~~~--~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~~~~~--~~~~~iv~~c~~G~rs~~aa~~L 76 (95)
T cd01534 1 IGAAELARWAAEGD--RTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAP--VRGARIVLADDDGVRADMTASWL 76 (95)
T ss_pred CCHHHHHHHHHcCC--CCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHHHhcc--cCCCeEEEECCCCChHHHHHHHH
Confidence 45678888886531 246799999999999999999999999876543222211 25789999999999999999999
Q ss_pred HHcCCCCeEEecchHHHcc
Q 022543 267 QTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 267 ~~~G~~~v~~l~GG~~~W~ 285 (295)
+.+||+ |++|+||+.+|.
T Consensus 77 ~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 77 AQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred HHcCCE-EEEecCcHHHhc
Confidence 999998 999999999996
No 12
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.82 E-value=1.7e-20 Score=141.46 Aligned_cols=99 Identities=46% Similarity=0.817 Sum_probs=81.6
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHHHH
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 266 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~~L 266 (295)
++++++.+.+.... ....+||+|++.||..+|||||+|+|+..+..+...+. ..+++++||+||++|.||..++..|
T Consensus 2 i~~~~l~~~~~~~~--~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~~~~~-~~~~~~~vv~~c~~g~rs~~~~~~l 78 (101)
T cd01528 2 ISVAELAEWLADER--EEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELD-SDNPDKDIVVLCHHGGRSMQVAQWL 78 (101)
T ss_pred CCHHHHHHHHhcCC--CCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHHHHhc-ccCCCCeEEEEeCCCchHHHHHHHH
Confidence 56788888886521 24689999999999999999999999987755422221 1246899999999999999999999
Q ss_pred HHcCCCCeEEecchHHHccccc
Q 022543 267 QTQGFRRVFNVSGGIHAYATKV 288 (295)
Q Consensus 267 ~~~G~~~v~~l~GG~~~W~~~~ 288 (295)
...||++|++|+||+.+|....
T Consensus 79 ~~~G~~~v~~l~GG~~~w~~~~ 100 (101)
T cd01528 79 LRQGFENVYNLQGGIDAWSLEV 100 (101)
T ss_pred HHcCCccEEEecCCHHHHhhhc
Confidence 9999999999999999997653
No 13
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.82 E-value=7.1e-20 Score=138.97 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=77.7
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCC--------CCCcEEEEeCCChh
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD--------PQKDTYVMCHHGMR 258 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~--------~~~~iv~~C~~g~r 258 (295)
++++++.+.+.+.. ....+||+|++.+|..||||||+|+|+..+...... +..++ .+++||+||.+|.+
T Consensus 1 is~~~l~~~l~~~~--~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~-~~~~~~~~~~~~~~~~~vv~~c~~g~~ 77 (105)
T cd01525 1 ISVYDVIRLLDNSP--AKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGE-LEQLPTVPRLENYKGKIIVIVSHSHKH 77 (105)
T ss_pred CCHHHHHHHHhCCC--CCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccc-cccccchHHHHhhcCCeEEEEeCCCcc
Confidence 46788888887531 357899999999999999999999999765321111 11122 47899999999999
Q ss_pred HHHHHHHHHHcCCCCeEEecchHHHcc
Q 022543 259 SLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 259 s~~a~~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
|..+++.|+.+||++|++|+||+.+|+
T Consensus 78 s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 78 AALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 999999999999999999999999995
No 14
>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional
Probab=99.81 E-value=7e-20 Score=141.21 Aligned_cols=91 Identities=26% Similarity=0.519 Sum_probs=83.5
Q ss_pred CCceEEEeeEEeccc--------------------hHHHHHHHHHHhCCCC-cHHHHHHHhCCCCCccCCCcccceeCCC
Q 022543 86 GDREILVQHLLVKED--------------------DLNLLSELQRRVSQGK-DLSDLAVEHSICPSKGEGGMLGWVRKGQ 144 (295)
Q Consensus 86 ~~~~~~~~~Il~~~~--------------------~~~~a~~i~~~i~~g~-~F~~~a~~~S~d~~~~~gG~lg~~~~~~ 144 (295)
.+++|+++|||++.. +++++++|+++|++|. +|+++|++||+++++.+||++||+..+.
T Consensus 2 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~~~~~~gG~lG~~~~~~ 81 (115)
T PTZ00356 2 EGDTVRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELAKWREQIVSGEKTFEEIARQRSDCGSAAKGGDLGFFGRGQ 81 (115)
T ss_pred CCcEEEEEEEEEecCCCcCcccccccccccccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCCchhhcCccceeEcccc
Confidence 578999999999843 2457999999999996 9999999999988888999999999999
Q ss_pred CcHHHHHHHhcCCCCcee-eeeecCceeeeehh
Q 022543 145 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL 176 (295)
Q Consensus 145 ~~~~~~~~~~~l~~g~is-pv~~~~G~~ii~v~ 176 (295)
++++|.+++++|++|++| |++++.||||+++.
T Consensus 82 L~~~~~~a~~~L~~Geis~Pi~t~~G~hIlk~~ 114 (115)
T PTZ00356 82 MQKPFEDAAFALKVGEISDIVHTDSGVHIILRL 114 (115)
T ss_pred cCHHHHHHHHcCCCCCCCCcEEECCEEEEEEEc
Confidence 999999999999999999 99999999999864
No 15
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.81 E-value=4.8e-20 Score=137.51 Aligned_cols=92 Identities=33% Similarity=0.538 Sum_probs=80.5
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhhhc--cCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHH
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL--SSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 264 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~~~--ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~ 264 (295)
+++.++.+.+.+. .+..+||+|++.+|.. ||||||+|+|+..+..+ ...++++++||+||.+|.+|..++.
T Consensus 2 i~~~~~~~~~~~~---~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~----~~~~~~~~~ivv~c~~g~~s~~a~~ 74 (96)
T cd01444 2 ISVDELAELLAAG---EAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDW----LGDLDRDRPVVVYCYHGNSSAQLAQ 74 (96)
T ss_pred cCHHHHHHHHhcC---CCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHH----HhhcCCCCCEEEEeCCCChHHHHHH
Confidence 5667888777652 3578999999999999 99999999999887543 3446889999999999999999999
Q ss_pred HHHHcCCCCeEEecchHHHcc
Q 022543 265 WLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 265 ~L~~~G~~~v~~l~GG~~~W~ 285 (295)
.|+..||++|++|+||+.+|.
T Consensus 75 ~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 75 ALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HHHHcCCceEEEcCCCHHHhc
Confidence 999999999999999999995
No 16
>PLN02160 thiosulfate sulfurtransferase
Probab=99.81 E-value=8.4e-20 Score=144.95 Aligned_cols=103 Identities=22% Similarity=0.340 Sum_probs=83.7
Q ss_pred ccccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCc--eecCcccccCC--C------CCccccCCCCCcEEEEe
Q 022543 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGF--QVLPLRQFGSW--G------PDITVKFDPQKDTYVMC 253 (295)
Q Consensus 184 ~~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA--inip~~~l~~~--~------~~~~~~~~~~~~iv~~C 253 (295)
...++++++.+++.+ +..+||||++.||..|||||| +|+|+..+... . ......++++++||+||
T Consensus 14 ~~~i~~~e~~~~~~~-----~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC 88 (136)
T PLN02160 14 VVSVDVSQAKTLLQS-----GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGC 88 (136)
T ss_pred eeEeCHHHHHHHHhC-----CCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEEC
Confidence 456788888888864 347899999999999999999 89997433110 0 00112247889999999
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEecchHHHcccccCCC
Q 022543 254 HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 254 ~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
++|.||..++..|...||.+|++|.||+.+|.+.+.|.
T Consensus 89 ~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 126 (136)
T PLN02160 89 QSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPI 126 (136)
T ss_pred CCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCc
Confidence 99999999999999999999999999999999998875
No 17
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=6.1e-20 Score=139.31 Aligned_cols=104 Identities=28% Similarity=0.451 Sum_probs=84.7
Q ss_pred ccccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCC----CCccc-----cCCCCCcEEEEeC
Q 022543 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG----PDITV-----KFDPQKDTYVMCH 254 (295)
Q Consensus 184 ~~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~----~~~~~-----~~~~~~~iv~~C~ 254 (295)
...++.++++.+++. .+..+||||+++||..||||.++|||+....... .+++. .-+.++.|||+|.
T Consensus 22 ~~sv~~~qvk~L~~~----~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~ 97 (136)
T KOG1530|consen 22 PQSVSVEQVKNLLQH----PDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCA 97 (136)
T ss_pred cEEEEHHHHHHHhcC----CCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEec
Confidence 445778899999886 4589999999999999999999999995432211 12211 1245569999999
Q ss_pred CChhHHHHHHHHHHcCCCCeEEecchHHHcccccCCC
Q 022543 255 HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 255 ~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
+|.||..|...|..+||.||.++.|||.+|...+.|.
T Consensus 98 SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~ 134 (136)
T KOG1530|consen 98 SGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPK 134 (136)
T ss_pred cCcchhHHHHHHHHcCcccccccCccHHHHHHccCCC
Confidence 9999999999999999999999999999999877654
No 18
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.81 E-value=6.8e-20 Score=135.26 Aligned_cols=88 Identities=31% Similarity=0.505 Sum_probs=77.0
Q ss_pred chhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHHHHH
Q 022543 188 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQ 267 (295)
Q Consensus 188 s~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~~L~ 267 (295)
+++++.+++. ++.++||+|++.+|..||||||+|+|+..+..+ +..++++++||+||.+|.++..++..|+
T Consensus 2 ~~~e~~~~~~-----~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~----~~~~~~~~~vvl~c~~g~~a~~~a~~L~ 72 (90)
T cd01524 2 QWHELDNYRA-----DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR----LNELPKDKEIIVYCAVGLRGYIAARILT 72 (90)
T ss_pred CHHHHHHHhc-----CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH----HHhcCCCCcEEEEcCCChhHHHHHHHHH
Confidence 5677888773 456899999999999999999999999877543 2346788999999999999999999999
Q ss_pred HcCCCCeEEecchHHHcc
Q 022543 268 TQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 268 ~~G~~~v~~l~GG~~~W~ 285 (295)
..|| +|++|+||+.+|.
T Consensus 73 ~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 73 QNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HCCC-CEEEecCCHHHhc
Confidence 9999 8999999999996
No 19
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.81 E-value=9.9e-20 Score=137.53 Aligned_cols=97 Identities=25% Similarity=0.480 Sum_probs=78.8
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhh-hccCCCCceecCcccccCCCCC----ccccCCCCCcEEEEeCCChhHHH
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEV-ALSSLPGFQVLPLRQFGSWGPD----ITVKFDPQKDTYVMCHHGMRSLQ 261 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~-~~ghIpgAinip~~~l~~~~~~----~~~~~~~~~~iv~~C~~g~rs~~ 261 (295)
++.+++.+.+.+ ...++||+|++.+| ..||||||+|+|+..+..+... ....++++++||+||.+|.+|..
T Consensus 1 is~~el~~~~~~----~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~ 76 (103)
T cd01447 1 LSPEDARALLGS----PGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFAEDKPFVFYCASGWRSAL 76 (103)
T ss_pred CCHHHHHHHHhC----CCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccccccccCCCCCCeEEEEcCCCCcHHH
Confidence 356778777764 35789999999998 5799999999998766432211 11236789999999999999999
Q ss_pred HHHHHHHcCCCCeEEecchHHHcccc
Q 022543 262 VAQWLQTQGFRRVFNVSGGIHAYATK 287 (295)
Q Consensus 262 a~~~L~~~G~~~v~~l~GG~~~W~~~ 287 (295)
+++.|+..||++|++|+||+.+|...
T Consensus 77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~ 102 (103)
T cd01447 77 AGKTLQDMGLKPVYNIEGGFKDWKEA 102 (103)
T ss_pred HHHHHHHcChHHhEeecCcHHHHhhc
Confidence 99999999999999999999999754
No 20
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=99.80 E-value=1.3e-19 Score=135.05 Aligned_cols=83 Identities=36% Similarity=0.616 Sum_probs=77.0
Q ss_pred eEEeccc--------hHHHHHHHHHHhCCCCc-HHHHHHHhCCCC-CccCCCcccceeCCCCcHHHHHHHhcCCCCcee-
Q 022543 94 HLLVKED--------DLNLLSELQRRVSQGKD-LSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA- 162 (295)
Q Consensus 94 ~Il~~~~--------~~~~a~~i~~~i~~g~~-F~~~a~~~S~d~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~g~is- 162 (295)
|||++.+ ++++|++++.+|++|++ |+++|++||++. ++.+||++||+..++++++|.+++++|++|++|
T Consensus 1 HIl~~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs~ 80 (95)
T PF00639_consen 1 HILVKPPPSDEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALFALKPGEVSK 80 (95)
T ss_dssp EEEEESTTSCCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHHTSTTTSBEE
T ss_pred CEEEECCCchhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHHhCCCCCcCC
Confidence 9999864 36789999999999985 999999999665 999999999999999999999999999999999
Q ss_pred eeeecCceeeeehh
Q 022543 163 RCKTKFGWHLLQVL 176 (295)
Q Consensus 163 pv~~~~G~~ii~v~ 176 (295)
|+.+..||||+++.
T Consensus 81 pi~t~~G~~Ii~v~ 94 (95)
T PF00639_consen 81 PIETDNGYHIIKVE 94 (95)
T ss_dssp EEEETTEEEEEEEE
T ss_pred CEEECCEEEEEEEE
Confidence 99999999999874
No 21
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.80 E-value=1.1e-19 Score=138.14 Aligned_cols=95 Identities=27% Similarity=0.382 Sum_probs=76.7
Q ss_pred chhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCC----C---cc--ccCCCCCcEEEEeCCChh
Q 022543 188 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP----D---IT--VKFDPQKDTYVMCHHGMR 258 (295)
Q Consensus 188 s~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~----~---~~--~~~~~~~~iv~~C~~g~r 258 (295)
+.+++.+.+... ....+||+|++.+|..||||||+|+|+..+..... . .+ ...+++++||+||++|.+
T Consensus 2 ~~~~~~~~l~~~---~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~ 78 (106)
T cd01519 2 SFEEVKNLPNPH---PNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVR 78 (106)
T ss_pred cHHHHHHhcCCC---CCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHH
Confidence 456777776511 45789999999999999999999999977642110 0 01 123578999999999999
Q ss_pred HHHHHHHHHHcCCCCeEEecchHHHcc
Q 022543 259 SLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 259 s~~a~~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
|..++..|..+||+||++|+||+.+|.
T Consensus 79 s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 79 SKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred HHHHHHHHHHcCCccceecCCcHHHHc
Confidence 999999999999999999999999996
No 22
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.80 E-value=1.3e-19 Score=135.41 Aligned_cols=83 Identities=23% Similarity=0.276 Sum_probs=70.5
Q ss_pred ccceEEeccChhhhhccCCCCceecCcccccCCCCCc--cccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecch
Q 022543 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG 280 (295)
Q Consensus 203 ~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~--~~~~~~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG 280 (295)
.+..+||+|++.+|..||||||+|+|+..+......+ +...+++++||+||.+|.+|..++..|+..||+||++|+||
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG 90 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGG 90 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCCHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCC
Confidence 4678999999999999999999999987664321111 12247889999999999999999999999999999999999
Q ss_pred HHHcc
Q 022543 281 IHAYA 285 (295)
Q Consensus 281 ~~~W~ 285 (295)
+.+|.
T Consensus 91 ~~~W~ 95 (96)
T cd01529 91 TSAWV 95 (96)
T ss_pred HHHhc
Confidence 99996
No 23
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.79 E-value=2.5e-19 Score=137.25 Aligned_cols=100 Identities=24% Similarity=0.282 Sum_probs=84.1
Q ss_pred cccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCCh--hHHHH
Q 022543 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGM--RSLQV 262 (295)
Q Consensus 185 ~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~--rs~~a 262 (295)
..++++++.+.+.... ...++||+|++.+|..||||||+|+|...+... ....++++++||+||++|. +|..+
T Consensus 8 ~~~s~~el~~~l~~~~--~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~---~~~~i~~~~~vvvyc~~g~~~~s~~~ 82 (110)
T cd01521 8 FETDCWDVAIALKNGK--PDFVLVDVRSAEAYARGHVPGAINLPHREICEN---ATAKLDKEKLFVVYCDGPGCNGATKA 82 (110)
T ss_pred eecCHHHHHHHHHcCC--CCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH---hhhcCCCCCeEEEEECCCCCchHHHH
Confidence 4588899999887531 247899999999999999999999999887522 2344688999999999874 89999
Q ss_pred HHHHHHcCCCCeEEecchHHHcccccCC
Q 022543 263 AQWLQTQGFRRVFNVSGGIHAYATKVDP 290 (295)
Q Consensus 263 ~~~L~~~G~~~v~~l~GG~~~W~~~~~p 290 (295)
+..|+..||+ |++|+||+.+|...+.|
T Consensus 83 a~~l~~~G~~-v~~l~GG~~~W~~~g~~ 109 (110)
T cd01521 83 ALKLAELGFP-VKEMIGGLDWWKREGYA 109 (110)
T ss_pred HHHHHHcCCe-EEEecCCHHHHHHCCCC
Confidence 9999999995 99999999999988765
No 24
>PRK01415 hypothetical protein; Validated
Probab=99.79 E-value=1.2e-19 Score=156.48 Aligned_cols=102 Identities=19% Similarity=0.364 Sum_probs=86.2
Q ss_pred ccccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCc--cccCCCCCcEEEEeCCChhHHH
Q 022543 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVKFDPQKDTYVMCHHGMRSLQ 261 (295)
Q Consensus 184 ~~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~--~~~~~~~~~iv~~C~~g~rs~~ 261 (295)
...++++++.+++.+ ++.++||||++.||+.||||||+|+|...+.+..... ...++++++|++||.+|.||..
T Consensus 111 g~~i~p~e~~~ll~~----~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGiRs~k 186 (247)
T PRK01415 111 GEYIEPKDWDEFITK----QDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGIRCEK 186 (247)
T ss_pred ccccCHHHHHHHHhC----CCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCChHHHH
Confidence 345888999999876 5688999999999999999999999987765421111 2345789999999999999999
Q ss_pred HHHHHHHcCCCCeEEecchHHHcccccC
Q 022543 262 VAQWLQTQGFRRVFNVSGGIHAYATKVD 289 (295)
Q Consensus 262 a~~~L~~~G~~~v~~l~GG~~~W~~~~~ 289 (295)
++..|++.||++|++|.||+.+|..+..
T Consensus 187 Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~~ 214 (247)
T PRK01415 187 STSLLKSIGYDEVYHLKGGILQYLEDTQ 214 (247)
T ss_pred HHHHHHHcCCCcEEEechHHHHHHHhcc
Confidence 9999999999999999999999987543
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.79 E-value=4.6e-19 Score=132.17 Aligned_cols=88 Identities=30% Similarity=0.537 Sum_probs=75.5
Q ss_pred ccceEEeccChhhhhccCCCCceecCcccccCCCCCc----------cccCCCCCcEEEEeCCChhHHHHHHHHHHcCCC
Q 022543 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI----------TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFR 272 (295)
Q Consensus 203 ~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~----------~~~~~~~~~iv~~C~~g~rs~~a~~~L~~~G~~ 272 (295)
.+..+||+|++.+|..||||||+|+|+..+....... ....+++++||+||.+|.++..++..|+..||+
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 5678999999999999999999999998775432111 234578899999999999999999999999999
Q ss_pred CeEEecchHHHcccccCC
Q 022543 273 RVFNVSGGIHAYATKVDP 290 (295)
Q Consensus 273 ~v~~l~GG~~~W~~~~~p 290 (295)
+|++|+||+.+|...+.|
T Consensus 83 ~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 83 NVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred ceEEecCCHHHHHhcCCC
Confidence 999999999999877653
No 26
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.78 E-value=1.6e-19 Score=142.07 Aligned_cols=94 Identities=31% Similarity=0.475 Sum_probs=75.9
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCC--------------------------CCc-
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG--------------------------PDI- 239 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~--------------------------~~~- 239 (295)
++++++.+.+.+ +..+||||++.||..||||||+|||+..+.... ..+
T Consensus 1 ~s~~el~~~l~~-----~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (128)
T cd01520 1 ITAEDLLALRKA-----DGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRIL 75 (128)
T ss_pred CCHHHHHHHHhc-----CCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHH
Confidence 466788887752 468999999999999999999999996432100 000
Q ss_pred --c--ccCCCCCcEEEEeC-CChhHHHHHHHHHHcCCCCeEEecchHHHccc
Q 022543 240 --T--VKFDPQKDTYVMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 240 --~--~~~~~~~~iv~~C~-~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 286 (295)
+ ..++++++||+||. +|.||..+++.|+.+|| +|++|+||+.+|..
T Consensus 76 ~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 76 NEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 0 25789999999997 68999999999999999 69999999999975
No 27
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.78 E-value=2.1e-19 Score=139.92 Aligned_cols=101 Identities=19% Similarity=0.317 Sum_probs=79.7
Q ss_pred cccchhHHHhhhcCCC--ccccceEEeccChhhhhccCCCCceecCcc-cccCCCCCc--cccCCCCCcEEEEeC-CChh
Q 022543 185 QDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLR-QFGSWGPDI--TVKFDPQKDTYVMCH-HGMR 258 (295)
Q Consensus 185 ~~is~~el~~~l~~~~--~~~~~~liDvR~~~e~~~ghIpgAinip~~-~l~~~~~~~--~~~~~~~~~iv~~C~-~g~r 258 (295)
..++++++.+++.+.. ...+..+||||++.||..||||||+|+|+. .+....... ...++++++||+||. +|.|
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~~~~~~~~~~~~~~vv~yC~~sg~r 81 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGVASKKKRRVLIFHCEFSSKR 81 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHHHhhcccccCCCCEEEEECCCcccc
Confidence 3578889988886520 013578999999999999999999999986 454321110 012578999999997 9999
Q ss_pred HHHHHHHHHHc------------CCCCeEEecchHHHcc
Q 022543 259 SLQVAQWLQTQ------------GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 259 s~~a~~~L~~~------------G~~~v~~l~GG~~~W~ 285 (295)
|..+++.|+.. ||.+|++|+||+.+|.
T Consensus 82 s~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 82 GPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred HHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 99999999984 9999999999999984
No 28
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.78 E-value=7.2e-19 Score=153.65 Aligned_cols=161 Identities=17% Similarity=0.297 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHhCCCCCccCCCcccceeCCCCcHHHHHHHhcCCCCceeeeeecCceeeeehhhhhhh
Q 022543 102 LNLLSELQRRVSQGKDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREA 181 (295)
Q Consensus 102 ~~~a~~i~~~i~~g~~F~~~a~~~S~d~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~g~ispv~~~~G~~ii~v~~~~~~ 181 (295)
..+++.+...|+.+.+|+++.-+.|..... .+. .+.-...+.+..+ |...+.. ..
T Consensus 52 ~~~id~~~~~l~~~~~~~dl~~k~~~~~~~-------pF~--~l~vk~k~eiv~~------------g~~~~n~----~~ 106 (257)
T PRK05320 52 REAIDAFYAWLRADARFADLQVKESLSDSQ-------PFR--RMLVKLKREIITM------------KRPAIRP----EL 106 (257)
T ss_pred HHHHHHHHHHHhhCCCccCceeecccccCC-------Cch--hccchhhhHHhhc------------CCcccCc----cc
Confidence 466899999999888999887655442210 011 1000111111111 1111100 01
Q ss_pred hhccccchhHHHhhhcCCCc--cccceEEeccChhhhhccCCCCceecCcccccCCCCCc---cccCCCCCcEEEEeCCC
Q 022543 182 SLLQDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI---TVKFDPQKDTYVMCHHG 256 (295)
Q Consensus 182 ~~~~~is~~el~~~l~~~~~--~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~---~~~~~~~~~iv~~C~~g 256 (295)
.....+++.++.+++.+..- +.+.++||||++.||+.||||||+|+|+.+|.++..++ ... .++++||+||.+|
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~~~~~~-~kdk~IvvyC~~G 185 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRAD-LAGKTVVSFCTGG 185 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHHhhhhh-cCCCeEEEECCCC
Confidence 12345778888887765210 12468999999999999999999999998876543222 112 2789999999999
Q ss_pred hhHHHHHHHHHHcCCCCeEEecchHHHccccc
Q 022543 257 MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV 288 (295)
Q Consensus 257 ~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~ 288 (295)
.||..++..|+..||+||++|.||+.+|.++.
T Consensus 186 ~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~~ 217 (257)
T PRK05320 186 IRCEKAAIHMQEVGIDNVYQLEGGILKYFEEV 217 (257)
T ss_pred HHHHHHHHHHHHcCCcceEEeccCHHHHHHhC
Confidence 99999999999999999999999999998754
No 29
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.78 E-value=9.1e-19 Score=143.03 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=82.4
Q ss_pred hhhccccchhHHHhhhcCCCccccceEEeccChh----hhhc---------cCCCCceecCcccccCCCC-------Ccc
Q 022543 181 ASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPE----EVAL---------SSLPGFQVLPLRQFGSWGP-------DIT 240 (295)
Q Consensus 181 ~~~~~~is~~el~~~l~~~~~~~~~~liDvR~~~----e~~~---------ghIpgAinip~~~l~~~~~-------~~~ 240 (295)
......++++++.+++.+ ....+||||++. +|.. +|||||+|+|+..+..... ..+
T Consensus 32 ~~~~~~vs~~el~~~l~~----~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l 107 (162)
T TIGR03865 32 LKGARVLDTEAAQALLAR----GPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGL 107 (162)
T ss_pred cCCccccCHHHHHHHHhC----CCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHH
Confidence 345677999999999976 457899999865 4543 4999999999643322111 011
Q ss_pred ---ccCCCCCcEEEEeCCCh-hHHHHHHHHHHcCCCCeEEecchHHHcccccCC
Q 022543 241 ---VKFDPQKDTYVMCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 290 (295)
Q Consensus 241 ---~~~~~~~~iv~~C~~g~-rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~p 290 (295)
...+++++||+||++|. +|..+++.|+.+||+||++|+||+.+|...+.|
T Consensus 108 ~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~P 161 (162)
T TIGR03865 108 ERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLP 161 (162)
T ss_pred HHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCC
Confidence 11268899999999997 899999999999999999999999999998876
No 30
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.77 E-value=1.2e-18 Score=135.88 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=79.6
Q ss_pred cchhHHHhhhcCCCccccceEEeccCh-------hhhhccCCCCceecCcccccCCC----CCc---------c--ccCC
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREP-------EEVALSSLPGFQVLPLRQFGSWG----PDI---------T--VKFD 244 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~-------~e~~~ghIpgAinip~~~l~~~~----~~~---------~--~~~~ 244 (295)
++++++.+.+.. ....+||+|++ .+|..||||||+|+|+..+.... ..+ + ..++
T Consensus 2 i~~~~l~~~l~~----~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd01448 2 VSPDWLAEHLDD----PDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGIS 77 (122)
T ss_pred cCHHHHHHHhCC----CCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 567888888865 35689999999 99999999999999987764321 111 0 1356
Q ss_pred CCCcEEEEeCC-ChhHHHHHHHHHHcCCCCeEEecchHHHcccc
Q 022543 245 PQKDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK 287 (295)
Q Consensus 245 ~~~~iv~~C~~-g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~ 287 (295)
++++|||||++ |.++..+++.|+..||+||++|+||+.+|...
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~ 121 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAE 121 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhC
Confidence 89999999999 58999999999999999999999999999764
No 31
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.77 E-value=3e-19 Score=138.35 Aligned_cols=97 Identities=23% Similarity=0.398 Sum_probs=80.1
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhhh-ccCCCCceecCcccccCCC------CCccccCCCCCcEEEEeCCChhH
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVA-LSSLPGFQVLPLRQFGSWG------PDITVKFDPQKDTYVMCHHGMRS 259 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~~-~ghIpgAinip~~~l~~~~------~~~~~~~~~~~~iv~~C~~g~rs 259 (295)
++++++.+++.+. ....+||+|++.||+ .||||||+|+|+..+.... ..+...++++++||+||++|.+|
T Consensus 1 is~~el~~~l~~~---~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs 77 (117)
T cd01522 1 LTPAEAWALLQAD---PQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGNRS 77 (117)
T ss_pred CCHHHHHHHHHhC---CCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCCccH
Confidence 4667888888763 467899999999999 9999999999998765321 11112236889999999999999
Q ss_pred HHHHHHHHHcCCCCeEEecchHHHccc
Q 022543 260 LQVAQWLQTQGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 260 ~~a~~~L~~~G~~~v~~l~GG~~~W~~ 286 (295)
..++..|+.+||+||+.+.||+.+|..
T Consensus 78 ~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 78 IAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred HHHHHHHHHCCCCeEEECcCceecCCC
Confidence 999999999999999999999999954
No 32
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=99.77 E-value=3e-19 Score=158.96 Aligned_cols=91 Identities=27% Similarity=0.595 Sum_probs=85.0
Q ss_pred eEEEeeEEeccchHHHHHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCcccceeCCCCcHHHHHHHhcCCCCcee-eeee
Q 022543 89 EILVQHLLVKEDDLNLLSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT 166 (295)
Q Consensus 89 ~~~~~~Il~~~~~~~~a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~g~is-pv~~ 166 (295)
+++++||+++.++. |+.++.+|++|++|+++|++||.|+ ++.+||++||+..+.++|+|..++++|++|++| ||++
T Consensus 136 ~~~~~~Ilv~~~~~--A~~i~~~l~~G~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~L~~GevS~pI~t 213 (285)
T PRK03002 136 EIKASHILVSDENE--AKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQISNPVKS 213 (285)
T ss_pred ceEEEEEEECCHHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHcCCCCCcCCcEEE
Confidence 58999999997754 9999999999999999999999998 789999999999999999999999999999999 9999
Q ss_pred cCceeeeehhhhhhh
Q 022543 167 KFGWHLLQVLSEREA 181 (295)
Q Consensus 167 ~~G~~ii~v~~~~~~ 181 (295)
+.||||+++.+++..
T Consensus 214 ~~G~hIikv~~~~~~ 228 (285)
T PRK03002 214 PNGYHIIKLTDKKDL 228 (285)
T ss_pred CCEEEEEEEeecCCC
Confidence 999999999887653
No 33
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.77 E-value=8.1e-19 Score=162.81 Aligned_cols=107 Identities=34% Similarity=0.587 Sum_probs=93.6
Q ss_pred ccccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHH
Q 022543 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA 263 (295)
Q Consensus 184 ~~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~ 263 (295)
...++++++.+.+.+. ....+||+|++.||..||||||+|+|+..+... ..+..++++++||+||++|.||..++
T Consensus 286 ~~~Is~~el~~~l~~~---~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~--~~~~~l~~d~~iVvyC~~G~rS~~aa 360 (392)
T PRK07878 286 GSTITPRELKEWLDSG---KKIALIDVREPVEWDIVHIPGAQLIPKSEILSG--EALAKLPQDRTIVLYCKTGVRSAEAL 360 (392)
T ss_pred CCccCHHHHHHHHhCC---CCeEEEECCCHHHHhcCCCCCCEEcChHHhcch--hHHhhCCCCCcEEEEcCCChHHHHHH
Confidence 3567888998888653 357899999999999999999999999887531 12345789999999999999999999
Q ss_pred HHHHHcCCCCeEEecchHHHcccccCCCCCCC
Q 022543 264 QWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295 (295)
Q Consensus 264 ~~L~~~G~~~v~~l~GG~~~W~~~~~p~~p~~ 295 (295)
..|++.||++|++|+||+.+|....+|.+|.|
T Consensus 361 ~~L~~~G~~~V~~L~GG~~~W~~~~~~~~p~~ 392 (392)
T PRK07878 361 AALKKAGFSDAVHLQGGVVAWAKQVDPSLPMY 392 (392)
T ss_pred HHHHHcCCCcEEEecCcHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999998
No 34
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=99.77 E-value=4.2e-19 Score=157.88 Aligned_cols=91 Identities=35% Similarity=0.584 Sum_probs=85.0
Q ss_pred eEEEeeEEeccchHHHHHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCcccceeCCCCcHHHHHHHhcCCCCcee-eeee
Q 022543 89 EILVQHLLVKEDDLNLLSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT 166 (295)
Q Consensus 89 ~~~~~~Il~~~~~~~~a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~g~is-pv~~ 166 (295)
+++++||+++++.. |++++++|++|++|+++|++||+|+ ++.+||++||+..+.++|+|..++++|++|++| ||++
T Consensus 134 ~~~v~~Ilv~~e~~--A~~i~~~l~~G~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~Lk~GevS~pi~t 211 (283)
T PRK02998 134 EMKVSHILVKDEKT--AKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQVSEPVKT 211 (283)
T ss_pred ceEEEEEEeCCHHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHcCCCCCcCCceEE
Confidence 58999999998755 9999999999999999999999998 788999999999999999999999999999999 9999
Q ss_pred cCceeeeehhhhhhh
Q 022543 167 KFGWHLLQVLSEREA 181 (295)
Q Consensus 167 ~~G~~ii~v~~~~~~ 181 (295)
++||||+++.+++..
T Consensus 212 ~~G~hIikv~~~~~~ 226 (283)
T PRK02998 212 TYGYHIIKVTDKKEL 226 (283)
T ss_pred CCEEEEEEEeccCCC
Confidence 999999999987543
No 35
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.76 E-value=1.8e-18 Score=134.09 Aligned_cols=95 Identities=20% Similarity=0.373 Sum_probs=77.4
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhhhc-----------cCCCCceecCcccccCCCC---------Ccc--ccCC
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL-----------SSLPGFQVLPLRQFGSWGP---------DIT--VKFD 244 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~~~-----------ghIpgAinip~~~l~~~~~---------~~~--~~~~ 244 (295)
++++++.+.+++ ....+||+|+..+|.. ||||||+|+|+..+..... ..+ ..++
T Consensus 1 ~s~~~l~~~l~~----~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (118)
T cd01449 1 VTAEEVLANLDS----GDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGIT 76 (118)
T ss_pred CCHHHHHHhcCC----CCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCC
Confidence 356778777754 3578999999999987 9999999999976543110 011 1246
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHHHcc
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
++++||+||++|.+|..++..|+.+||++|++|+||+.+|.
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 88999999999999999999999999999999999999996
No 36
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2e-18 Score=131.75 Aligned_cols=90 Identities=32% Similarity=0.523 Sum_probs=80.1
Q ss_pred ccceEEeccChhhhhccCCCC-ceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchH
Q 022543 203 KEAQLIDVREPEEVALSSLPG-FQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 281 (295)
Q Consensus 203 ~~~~liDvR~~~e~~~ghIpg-Ainip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 281 (295)
+...++|||++.||+.+|||| ++|+|+.++........ +++++++||||.+|.||..++..|+..||.+++++.||+
T Consensus 19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~--~~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~ 96 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE--LPDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGI 96 (110)
T ss_pred CCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc--cCCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcH
Confidence 568999999999999999999 99999999866432222 578999999999999999999999999999888999999
Q ss_pred HHcccccCCCCCC
Q 022543 282 HAYATKVDPSIPT 294 (295)
Q Consensus 282 ~~W~~~~~p~~p~ 294 (295)
.+|...+.|..+.
T Consensus 97 ~~w~~~~~~~~~~ 109 (110)
T COG0607 97 DAWKGAGLPLVRG 109 (110)
T ss_pred HHHHhcCCCcccC
Confidence 9999999987764
No 37
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.8e-18 Score=131.67 Aligned_cols=91 Identities=32% Similarity=0.559 Sum_probs=83.0
Q ss_pred CCCceEEEeeEEeccc-------------------hHHHHHHHHHHhCCCC-cHHHHHHHhCCCCCccCCCcccceeCCC
Q 022543 85 GGDREILVQHLLVKED-------------------DLNLLSELQRRVSQGK-DLSDLAVEHSICPSKGEGGMLGWVRKGQ 144 (295)
Q Consensus 85 ~~~~~~~~~~Il~~~~-------------------~~~~a~~i~~~i~~g~-~F~~~a~~~S~d~~~~~gG~lg~~~~~~ 144 (295)
..+++|+.+||||+.+ |...++.+...|++|+ +|.+||+++|++.++..||+|||+.+++
T Consensus 50 ~~p~~Vr~sHlLVKH~~SRrpsSwr~~~it~skeeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrgq 129 (163)
T KOG3259|consen 50 GEPARVRCSHLLVKHKGSRRPSSWRSENITRSKEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRGQ 129 (163)
T ss_pred CCccceeEEEEEEccccCCCCcccccccchhhHHHHHHHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCccccccccc
Confidence 4678999999999852 3456777888899997 9999999999999999999999999999
Q ss_pred CcHHHHHHHhcCCCCcee-eeeecCceeeeeh
Q 022543 145 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQV 175 (295)
Q Consensus 145 ~~~~~~~~~~~l~~g~is-pv~~~~G~~ii~v 175 (295)
|.++|++++|+|++|++| +|.|+.|+|||+.
T Consensus 130 Mqk~FEdaafaL~~ge~SgiV~t~SG~HiI~R 161 (163)
T KOG3259|consen 130 MQKPFEDAAFALKVGEMSGIVDTDSGVHIIYR 161 (163)
T ss_pred ccccchhhhhhcccccccCceecCCceEEEEe
Confidence 999999999999999999 9999999999964
No 38
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.76 E-value=1.2e-18 Score=129.16 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=68.2
Q ss_pred ccceEEeccChhhhhccCCCCceecCcccccCCCCCccccC-CCCCcEEEEeCCChh--HHHHHHHHHHcCCCCeEEecc
Q 022543 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF-DPQKDTYVMCHHGMR--SLQVAQWLQTQGFRRVFNVSG 279 (295)
Q Consensus 203 ~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~-~~~~~iv~~C~~g~r--s~~a~~~L~~~G~~~v~~l~G 279 (295)
+...+||+|++.+|..+|||||+|+|+..+.... ...+ +++++||+||.+|.+ |..+++.|+..||++|++|+|
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~---~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~G 85 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLSRLELDA---WVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEG 85 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh---HhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccC
Confidence 4578999999999999999999999988764211 1123 358999999999987 689999999999999999999
Q ss_pred hHHHccc
Q 022543 280 GIHAYAT 286 (295)
Q Consensus 280 G~~~W~~ 286 (295)
|+.+|.+
T Consensus 86 G~~~W~~ 92 (92)
T cd01532 86 GLQGWRA 92 (92)
T ss_pred CHHHHcC
Confidence 9999963
No 39
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=99.76 E-value=1.4e-18 Score=155.25 Aligned_cols=107 Identities=21% Similarity=0.351 Sum_probs=89.6
Q ss_pred ccCchhhhccccCCCCCCCCCCCceEEEeeEEeccchHHHHHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCcccceeC-
Q 022543 65 SFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVRK- 142 (295)
Q Consensus 65 ~~~~~e~~~y~~~~~~~~~~~~~~~~~~~~Il~~~~~~~~a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~~- 142 (295)
.|++.+...|... .+++|+++||+++++.. |++++++|++|++|+++|++||+|+ ++.+||+|||+..
T Consensus 128 ~Vtd~ei~~~y~~--------~~~~~~v~hIlv~~~~~--A~~v~~~l~~G~~F~~lA~~~S~d~~~~~~GGdlG~~~~~ 197 (298)
T PRK04405 128 KVTNSQLKKAWKS--------YQPKVTVQHILVSKKST--AETVIKKLKDGKDFAKLAKKYSTDTATKNKGGKLSAFDST 197 (298)
T ss_pred CCCHHHHHHHHHH--------hhhhEEEEEEEecChHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcCcccccC
Confidence 4555555444432 13479999999987755 9999999999999999999999998 7789999998854
Q ss_pred -CCCcHHHHHHHhcCCCCce-e-eeeecCceeeeehhhhhhh
Q 022543 143 -GQLVPEFEEVAFTTPLNKV-A-RCKTKFGWHLLQVLSEREA 181 (295)
Q Consensus 143 -~~~~~~~~~~~~~l~~g~i-s-pv~~~~G~~ii~v~~~~~~ 181 (295)
+.++|+|.+++++|++|++ | ||++++||||+++.++...
T Consensus 198 ~~~l~~~f~~a~~~L~~Geiss~pv~t~~GyhIikv~~~~~~ 239 (298)
T PRK04405 198 DTTLDSTFKTAAFKLKNGEYTTTPVKTTYGYEVIKMIKHPAK 239 (298)
T ss_pred CCCCCHHHHHHHHcCCCCCccCCCEEeCCeEEEEEEeecCCC
Confidence 6899999999999999998 5 9999999999999875543
No 40
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.75 E-value=3.9e-19 Score=166.68 Aligned_cols=115 Identities=19% Similarity=0.311 Sum_probs=95.9
Q ss_pred cccCchhhhccccCCCCCCCCCCCceEEEeeEEeccc----------hHHHHHHHHHHhCCCCcHHHHHHHhCCCCCccC
Q 022543 64 RSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKED----------DLNLLSELQRRVSQGKDLSDLAVEHSICPSKGE 133 (295)
Q Consensus 64 ~~~~~~e~~~y~~~~~~~~~~~~~~~~~~~~Il~~~~----------~~~~a~~i~~~i~~g~~F~~~a~~~S~d~~~~~ 133 (295)
-.+.+.|...|..... .....+.+++++||+|+.+ .+++|++++.+|++|++|+++|+.||+|+++.+
T Consensus 132 i~vs~~ei~~~~~~~~--~~~~~~~~~~~~~I~i~~~~~~s~~~~~~~~~~a~~l~~~l~~g~~F~~lA~~yS~~~~a~~ 209 (413)
T PRK10770 132 ITILPQEVDSLAKQIG--NQNDASTELNLSHILIPLPENPTQDQVDEAESQARSIVDQARNGADFGKLAIAYSADQQALK 209 (413)
T ss_pred CCCCHHHHHHHHHHHH--hhccccceEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCccccc
Confidence 3455555544432111 1124578999999999722 367799999999999999999999999999999
Q ss_pred CCcccceeCCCCcHHHHHHHhcCCCCcee-eeeecCceeeeehhhhhh
Q 022543 134 GGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSERE 180 (295)
Q Consensus 134 gG~lg~~~~~~~~~~~~~~~~~l~~g~is-pv~~~~G~~ii~v~~~~~ 180 (295)
||+|||+..+.++++|.+++++|++|++| |+++..||||+++.+.++
T Consensus 210 gGdlg~~~~~~l~~~~~~~~~~l~~G~is~Pi~t~~GyhIikl~~~~~ 257 (413)
T PRK10770 210 GGQMGWGRIQELPGLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRG 257 (413)
T ss_pred CCcCCccccccccHHHHHHHHhCCCCCCCCcEECCCceEEEEEeeecc
Confidence 99999999999999999999999999999 999999999999998764
No 41
>PRK07411 hypothetical protein; Validated
Probab=99.75 E-value=3e-18 Score=158.73 Aligned_cols=109 Identities=28% Similarity=0.493 Sum_probs=90.9
Q ss_pred ccccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCC-CCccccCCCCCcEEEEeCCChhHHHH
Q 022543 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG-PDITVKFDPQKDTYVMCHHGMRSLQV 262 (295)
Q Consensus 184 ~~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~-~~~~~~~~~~~~iv~~C~~g~rs~~a 262 (295)
...++.+++.+++.... .+.++||+|++.||+.||||||+|+|+.++.... ...+..++++++||+||.+|.||..+
T Consensus 281 ~~~Is~~el~~~l~~~~--~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~~~~l~~l~~d~~IVvyC~~G~RS~~a 358 (390)
T PRK07411 281 IPEMTVTELKALLDSGA--DDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEKVKELLNGHRLIAHCKMGGRSAKA 358 (390)
T ss_pred cCccCHHHHHHHHhCCC--CCeEEEECCCHHHhccCcCCCCEEccHHHhhcccchHHHhhcCCCCeEEEECCCCHHHHHH
Confidence 35688888888886531 2568999999999999999999999998775421 01223457899999999999999999
Q ss_pred HHHHHHcCCCCeEEecchHHHcccccCCCCCCC
Q 022543 263 AQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295 (295)
Q Consensus 263 ~~~L~~~G~~~v~~l~GG~~~W~~~~~p~~p~~ 295 (295)
+..|+..||++ +.+.||+.+|.++.+|++|.|
T Consensus 359 a~~L~~~G~~~-~~l~GG~~~W~~~~~p~~p~y 390 (390)
T PRK07411 359 LGILKEAGIEG-TNVKGGITAWSREVDPSVPQY 390 (390)
T ss_pred HHHHHHcCCCe-EEecchHHHHHHhcCCCCCCC
Confidence 99999999975 589999999999999999998
No 42
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.75 E-value=1.8e-18 Score=129.97 Aligned_cols=81 Identities=25% Similarity=0.353 Sum_probs=68.5
Q ss_pred ccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHH
Q 022543 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 203 ~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 282 (295)
....+||+|++.||..||||||+|+|+.++....... ..+++++||+||++|.||..++..|+..||++|+++ ||+.
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~~~--~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~-GG~~ 93 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIATA--VPDKNDTVKLYCNAGRQSGMAKDILLDMGYTHAENA-GGIK 93 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHHHh--CCCCCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEec-CCHH
Confidence 4457999999999999999999999998875432222 124678999999999999999999999999999885 9999
Q ss_pred Hccc
Q 022543 283 AYAT 286 (295)
Q Consensus 283 ~W~~ 286 (295)
+|..
T Consensus 94 ~~~~ 97 (101)
T TIGR02981 94 DIAM 97 (101)
T ss_pred Hhhh
Confidence 9953
No 43
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.75 E-value=9.4e-19 Score=133.95 Aligned_cols=95 Identities=32% Similarity=0.570 Sum_probs=76.3
Q ss_pred chhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCC------------CCccccCCCCCcEEEEeCC
Q 022543 188 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG------------PDITVKFDPQKDTYVMCHH 255 (295)
Q Consensus 188 s~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~------------~~~~~~~~~~~~iv~~C~~ 255 (295)
+++++.+.+.+ .+.++||+|++.+|..||||||+|+|+..+.... ......++.+++||+||.+
T Consensus 1 s~~el~~~l~~----~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~ 76 (113)
T PF00581_consen 1 SPEELKEMLEN----ESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSS 76 (113)
T ss_dssp -HHHHHHHHTT----TTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESS
T ss_pred CHHHHHhhhhC----CCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeec
Confidence 46788888833 6789999999999999999999999996541100 1112235788899999999
Q ss_pred ChhHHHHHHH-----HHHcCCCCeEEecchHHHccc
Q 022543 256 GMRSLQVAQW-----LQTQGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 256 g~rs~~a~~~-----L~~~G~~~v~~l~GG~~~W~~ 286 (295)
|.++..++.. |..+||++|++|+||+.+|.+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 77 GWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 9998877776 888999999999999999975
No 44
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.74 E-value=2.3e-18 Score=138.18 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=75.1
Q ss_pred ccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHH
Q 022543 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 203 ~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 282 (295)
.+..+||+|++.+|..||||||+|+|...+... +..++++++|||||.+|.+|..++..|+..||.+|++|+||+.
T Consensus 10 ~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~----l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 10 GQTAVVDVTASANYVKRHIPGAWWVLRAQLAQA----LEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred CCeEEEECCCHHHHHcCCCCCceeCCHHHHHHH----HHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 457899999999999999999999998877543 3345778999999999999999999999999999999999999
Q ss_pred HcccccCCC
Q 022543 283 AYATKVDPS 291 (295)
Q Consensus 283 ~W~~~~~p~ 291 (295)
+|...+.|.
T Consensus 86 aW~~~g~pl 94 (145)
T cd01535 86 AWIAAGLPV 94 (145)
T ss_pred HHHHCCCCc
Confidence 999887663
No 45
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.73 E-value=2.8e-18 Score=132.05 Aligned_cols=98 Identities=18% Similarity=0.286 Sum_probs=77.3
Q ss_pred ccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccC--CCCCcEEEEeC-CChhHHHH
Q 022543 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCH-HGMRSLQV 262 (295)
Q Consensus 186 ~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~--~~~~~iv~~C~-~g~rs~~a 262 (295)
.++++++.+++.... ....+||+|++ ||..||||||+|+|+..+......+.... +++++||+||. +|.|+..+
T Consensus 3 ~is~~~l~~~~~~~~--~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~~~~~~~~~~~~~iv~yC~~~~~r~~~a 79 (113)
T cd01531 3 YISPAQLKGWIRNGR--PPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQLVQLLSGSKKDTVVFHCALSQVRGPSA 79 (113)
T ss_pred cCCHHHHHHHHHcCC--CCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHHHHHHHhcCCCCeEEEEeecCCcchHHH
Confidence 477888988886531 24679999999 99999999999999988755433332222 56789999998 77888888
Q ss_pred HHHHHH--------cCCCCeEEecchHHHccc
Q 022543 263 AQWLQT--------QGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 263 ~~~L~~--------~G~~~v~~l~GG~~~W~~ 286 (295)
+..|.+ .||.||++|+||+.+|..
T Consensus 80 a~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~ 111 (113)
T cd01531 80 ARKFLRYLDEEDLETSKFEVYVLHGGFNAWES 111 (113)
T ss_pred HHHHHHHHHHhccccCCCeEEEEcChHHHHHh
Confidence 877744 499999999999999975
No 46
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.73 E-value=5.8e-18 Score=123.93 Aligned_cols=81 Identities=36% Similarity=0.617 Sum_probs=71.3
Q ss_pred ccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHH
Q 022543 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 203 ~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 282 (295)
....+||+|++.+|..+|||||+|+|+..+.... .....+++++||+||..|.++..++..|+..||.++++|.||+.
T Consensus 9 ~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~--~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 9 EDAVLLDVREPEEYAAGHIPGAINIPLSELEERA--ALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCeEEEECCCHHHHhccccCCCEecchHHHhhHH--HhhccCCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 5678999999999999999999999998764321 12345789999999999999999999999999999999999999
Q ss_pred Hcc
Q 022543 283 AYA 285 (295)
Q Consensus 283 ~W~ 285 (295)
+|.
T Consensus 87 ~w~ 89 (89)
T cd00158 87 AWK 89 (89)
T ss_pred hcC
Confidence 994
No 47
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.73 E-value=5.9e-18 Score=152.04 Aligned_cols=102 Identities=21% Similarity=0.476 Sum_probs=85.9
Q ss_pred ccccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCc--cccCCCCCcEEEEeCCChhHHH
Q 022543 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVKFDPQKDTYVMCHHGMRSLQ 261 (295)
Q Consensus 184 ~~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~--~~~~~~~~~iv~~C~~g~rs~~ 261 (295)
...++++++.+++.+ ++.++||+|++.||+.||||||+|+|+..+.+....+ .....++++||+||.+|.||..
T Consensus 111 ~~~is~~el~~~l~~----~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G~Rs~~ 186 (314)
T PRK00142 111 GTYLKPKEVNELLDD----PDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGGIRCEK 186 (314)
T ss_pred CcccCHHHHHHHhcC----CCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCCcHHHH
Confidence 456888999988875 5679999999999999999999999998876432221 1123588999999999999999
Q ss_pred HHHHHHHcCCCCeEEecchHHHcccccC
Q 022543 262 VAQWLQTQGFRRVFNVSGGIHAYATKVD 289 (295)
Q Consensus 262 a~~~L~~~G~~~v~~l~GG~~~W~~~~~ 289 (295)
++.+|+..||+||++|+||+.+|.....
T Consensus 187 aa~~L~~~Gf~~V~~L~GGi~~w~~~~~ 214 (314)
T PRK00142 187 ASAWMKHEGFKEVYQLEGGIITYGEDPE 214 (314)
T ss_pred HHHHHHHcCCCcEEEecchHHHHHHhhc
Confidence 9999999999999999999999987544
No 48
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=99.72 E-value=9.9e-18 Score=149.36 Aligned_cols=90 Identities=34% Similarity=0.620 Sum_probs=85.0
Q ss_pred eEEEeeEEeccchHHHHHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCcccceeCCCCcHHHHHHHhcCCCCcee-eeee
Q 022543 89 EILVQHLLVKEDDLNLLSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT 166 (295)
Q Consensus 89 ~~~~~~Il~~~~~~~~a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~g~is-pv~~ 166 (295)
+++++||++++++. |++++.+|++|.+|+++|++||+|+ ++.+||++||+..+.++|.|..+++.|++|++| |+++
T Consensus 132 ~v~~~hIlv~~~~~--A~~i~~~l~~G~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L~~GevS~pi~t 209 (287)
T PRK03095 132 EIKASHILVKDEAT--AKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVKS 209 (287)
T ss_pred cEEEEEEEeCCHHH--HHHHHHHHHCCCCHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhCCCCCcCCceEE
Confidence 48999999998755 9999999999999999999999998 788999999999999999999999999999999 9999
Q ss_pred cCceeeeehhhhhh
Q 022543 167 KFGWHLLQVLSERE 180 (295)
Q Consensus 167 ~~G~~ii~v~~~~~ 180 (295)
+.||||+++.++++
T Consensus 210 ~~G~hIikv~~~~~ 223 (287)
T PRK03095 210 QFGYHIIKVTDIKE 223 (287)
T ss_pred CCEEEEEEEeeecC
Confidence 99999999998765
No 49
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.72 E-value=7.3e-18 Score=127.24 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=67.9
Q ss_pred ccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHH
Q 022543 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 203 ~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 282 (295)
..-.+||+|++.||..||||||+|+|+.++..+...+ ..+++++||+||++|.||..++..|...||++|++ .||+.
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l~~l--~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~-~GG~~ 95 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATA--VPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAEN-AGGLK 95 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccEECCHHHHHHHHHhc--CCCCCCeEEEEeCCChHHHHHHHHHHHcCCCeEEe-cCCHH
Confidence 3446999999999999999999999998775432222 12467889999999999999999999999999977 69999
Q ss_pred Hccc
Q 022543 283 AYAT 286 (295)
Q Consensus 283 ~W~~ 286 (295)
+|..
T Consensus 96 ~~~~ 99 (104)
T PRK10287 96 DIAM 99 (104)
T ss_pred HHhh
Confidence 9953
No 50
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.71 E-value=7.4e-18 Score=129.74 Aligned_cols=100 Identities=22% Similarity=0.363 Sum_probs=74.2
Q ss_pred cccchhHHHhhhcCCC--ccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccC--CCCCcEEEEeCC-ChhH
Q 022543 185 QDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCHH-GMRS 259 (295)
Q Consensus 185 ~~is~~el~~~l~~~~--~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~--~~~~~iv~~C~~-g~rs 259 (295)
..++++++.+++.+.. ..+...+||||++ ||..||||||+|+|+..+..+..+....+ ...++||+||.+ |.||
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~rs 80 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGRG 80 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHHHHHHHHhhhcCCCEEEEECCCCCccc
Confidence 3477889999887520 0024689999999 99999999999999987754332222212 346789999996 6888
Q ss_pred HHHHHHHH----HcCC--CCeEEecchHHHcc
Q 022543 260 LQVAQWLQ----TQGF--RRVFNVSGGIHAYA 285 (295)
Q Consensus 260 ~~a~~~L~----~~G~--~~v~~l~GG~~~W~ 285 (295)
..++.+|. ..|| .++++|+||+.+|.
T Consensus 81 ~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 81 PRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 88776654 3475 68999999999995
No 51
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.70 E-value=6.5e-17 Score=128.70 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=77.4
Q ss_pred cchhHHHhhhcCCCccccceEEeccCh--------hhhhc------------cCCCCceecCcccccCCCC---------
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREP--------EEVAL------------SSLPGFQVLPLRQFGSWGP--------- 237 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~--------~e~~~------------ghIpgAinip~~~l~~~~~--------- 237 (295)
++.+++.+.+......+...+||+|.. .+|.. ||||||+|+|+..+.....
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 456788888763211156889999976 88988 9999999999876532111
Q ss_pred -Cc---c--ccCCCCCcEEEEeCC---ChhHHHHHHHHHHcCCCCeEEecchHHHccc
Q 022543 238 -DI---T--VKFDPQKDTYVMCHH---GMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 238 -~~---~--~~~~~~~~iv~~C~~---g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 286 (295)
.+ + ..++++++||+||.+ |.++.++++.|+.+||+||++|+||+.+|.+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~~ 138 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWFH 138 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhhC
Confidence 00 1 135688999999986 7889999999999999999999999999963
No 52
>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.3e-17 Score=118.66 Aligned_cols=90 Identities=30% Similarity=0.630 Sum_probs=81.3
Q ss_pred CCCceEEEeeEEeccchHHHHHHHHHHhCCCCcHHHHHHHhCCCCCccCCCcccceeCCCCcHHHHHHHhcCCCC-----
Q 022543 85 GGDREILVQHLLVKEDDLNLLSELQRRVSQGKDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLN----- 159 (295)
Q Consensus 85 ~~~~~~~~~~Il~~~~~~~~a~~i~~~i~~g~~F~~~a~~~S~d~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~g----- 159 (295)
..+.-|+|||||....-+ +.+..++|++|..|.++|.+||+|+ +-.||+|||++++.|+-.|.+++|+|+++
T Consensus 35 gggtaVKvRHiLCEKqGK--i~EA~eKLk~G~~F~evAA~YSEdk-ar~GGDLGW~~RG~MvGPFQdaAFalpvs~~~~p 111 (133)
T KOG3258|consen 35 GGGTAVKVRHILCEKQGK--INEAMEKLKSGMKFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQDAAFALPVSTVDKP 111 (133)
T ss_pred CCcceEEEEEeeehhhch--HHHHHHHHHcccchHHHHHHhccCc-cccCCcccceeccccccchhhhhhcccccccCCc
Confidence 567899999999977766 9999999999999999999999999 77899999999999999999999999988
Q ss_pred -cee-eeeecCceeeeehhh
Q 022543 160 -KVA-RCKTKFGWHLLQVLS 177 (295)
Q Consensus 160 -~is-pv~~~~G~~ii~v~~ 177 (295)
.++ ||++.+|||||.+..
T Consensus 112 v~TdpP~KtkfGYHiImvEG 131 (133)
T KOG3258|consen 112 VYTDPPVKTKFGYHIIMVEG 131 (133)
T ss_pred cccCCCcccccceEEEEecc
Confidence 445 689999999997654
No 53
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.68 E-value=5.4e-17 Score=150.10 Aligned_cols=100 Identities=29% Similarity=0.388 Sum_probs=85.1
Q ss_pred cccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHH
Q 022543 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 264 (295)
Q Consensus 185 ~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~ 264 (295)
..++++++.+.+.+ +..+||+|++.||..||||||+|+|+..+..+.... ..+++++||+||.+|.||..+++
T Consensus 3 ~~is~~el~~~l~~-----~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~--~~~~~~~IvvyC~~G~rs~~aa~ 75 (376)
T PRK08762 3 REISPAEARARAAQ-----GAVLIDVREAHERASGQAEGALRIPRGFLELRIETH--LPDRDREIVLICASGTRSAHAAA 75 (376)
T ss_pred ceeCHHHHHHHHhC-----CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHHhhh--cCCCCCeEEEEcCCCcHHHHHHH
Confidence 34778889888864 368999999999999999999999998775432222 12678999999999999999999
Q ss_pred HHHHcCCCCeEEecchHHHcccccCCC
Q 022543 265 WLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 265 ~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
.|+..||+||++|+||+.+|...+.|.
T Consensus 76 ~L~~~G~~~v~~l~GG~~~W~~~g~p~ 102 (376)
T PRK08762 76 TLRELGYTRVASVAGGFSAWKDAGLPL 102 (376)
T ss_pred HHHHcCCCceEeecCcHHHHHhcCCcc
Confidence 999999999999999999999887764
No 54
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=99.68 E-value=2.9e-17 Score=149.99 Aligned_cols=112 Identities=27% Similarity=0.416 Sum_probs=94.7
Q ss_pred ccCchhhhccc-cCCCCCCCCC-CCceEEEeeEEeccchHHHHHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCccccee
Q 022543 65 SFTSPKAASFS-SGTEGSSPGG-GDREILVQHLLVKEDDLNLLSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVR 141 (295)
Q Consensus 65 ~~~~~e~~~y~-~~~~~~~~~~-~~~~~~~~~Il~~~~~~~~a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~ 141 (295)
.+++.+...|. .+.. ... .+.+++++||++++++. |+++++++++|++|+++|++||.++ ++.+||++||++
T Consensus 173 ~vsd~ei~~~y~~~~~---~~~~~p~~~~v~~I~~~~~~~--a~~~~~~l~~g~~F~~la~~~s~~~~~~~~~g~lg~~~ 247 (336)
T PRK00059 173 KVTDKDAQKYYNENKS---KFTEKPNTMHLAHILVKTEDE--AKKVKKRLDKGEDFAKVAKEVSQDPGSKDKGGDLGDVP 247 (336)
T ss_pred CCCHHHHHHHHHHhhh---hhcCCcceEEEEEEEecCHHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcccccc
Confidence 45555554444 3321 122 57899999999997755 9999999999999999999999997 889999999999
Q ss_pred C--CCCcHHHHHHHhcCCCCcee-eeeecCceeeeehhhhhhh
Q 022543 142 K--GQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREA 181 (295)
Q Consensus 142 ~--~~~~~~~~~~~~~l~~g~is-pv~~~~G~~ii~v~~~~~~ 181 (295)
. +.++|+|..+++.|++|++| |+.++.||||+++.++.+.
T Consensus 248 ~~~~~l~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~~~~~~ 290 (336)
T PRK00059 248 YSDSGYDKEFMDGAKALKEGEISAPVKTQFGYHIIKAIKKKEY 290 (336)
T ss_pred cccCccCHHHHHHHHcCCCCCcCccEecCCeEEEEEEEeeccC
Confidence 8 78899999999999999999 9999999999999987654
No 55
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.65 E-value=2.9e-16 Score=142.09 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=79.6
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhh-----------hccCCCCceecCcccccCCCC---------Ccc--ccCC
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEV-----------ALSSLPGFQVLPLRQFGSWGP---------DIT--VKFD 244 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~-----------~~ghIpgAinip~~~l~~~~~---------~~~--~~~~ 244 (295)
++.+++...+.. .+..+||+|++.+| ..||||||+|+|+..+..... ..+ ..++
T Consensus 192 ~~~~~v~~~~~~----~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~ 267 (320)
T PLN02723 192 WTLEQVKKNIED----KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGIS 267 (320)
T ss_pred ecHHHHHHhhcC----CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCC
Confidence 566788877765 35679999999998 459999999999976543211 111 2467
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHHHccccc
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV 288 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~ 288 (295)
++++||+||++|.||+.++..|+.+||+||++|+|||.+|....
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~ 311 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALP 311 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCC
Confidence 89999999999999999999999999999999999999998664
No 56
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.8e-16 Score=139.27 Aligned_cols=99 Identities=21% Similarity=0.307 Sum_probs=81.5
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhhhc----------cCCCCceecCcccccCCCC---------Cc--cccCCC
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL----------SSLPGFQVLPLRQFGSWGP---------DI--TVKFDP 245 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~~~----------ghIpgAinip~~~l~~~~~---------~~--~~~~~~ 245 (295)
++.+++...+.. ...++||+|.+.+|.+ ||||||+|+|+..+.+... .+ ...+++
T Consensus 158 ~~~~~~~~~~~~----~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~ 233 (285)
T COG2897 158 VDATLVADALEV----PAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDP 233 (285)
T ss_pred CCHHHHHHHhcC----CCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCC
Confidence 444666666665 4667999999999998 9999999999988765210 11 134689
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHHHcccccC
Q 022543 246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 289 (295)
Q Consensus 246 ~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~ 289 (295)
+++||+||++|.+|+..+..|+.+|+.++++|+|+|.+|....+
T Consensus 234 ~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~ 277 (285)
T COG2897 234 DKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPD 277 (285)
T ss_pred CCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCC
Confidence 99999999999999999999999999888999999999987655
No 57
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.64 E-value=5.9e-16 Score=137.85 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=80.5
Q ss_pred ccchhHHHhhhcCCCccccceEEeccC----------hhhhhccCCCCceecCcccccCCCC---Cc----------c--
Q 022543 186 DIQPDELHKKMQDPNFHKEAQLIDVRE----------PEEVALSSLPGFQVLPLRQFGSWGP---DI----------T-- 240 (295)
Q Consensus 186 ~is~~el~~~l~~~~~~~~~~liDvR~----------~~e~~~ghIpgAinip~~~l~~~~~---~~----------~-- 240 (295)
-++++++.+.+.+ .+..+||+|+ +.+|..||||||+|+|+..+..... .. +
T Consensus 6 lvs~~~l~~~l~~----~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T PRK11493 6 FVAADWLAEHIDD----PEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRE 81 (281)
T ss_pred ccCHHHHHHhcCC----CCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence 3788899998876 4678999996 6889999999999999866533111 01 1
Q ss_pred ccCCCCCcEEEEeCCChh-HHHHHHHHHHcCCCCeEEecchHHHcccccCC
Q 022543 241 VKFDPQKDTYVMCHHGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 290 (295)
Q Consensus 241 ~~~~~~~~iv~~C~~g~r-s~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~p 290 (295)
..++++++||+||.+|.+ +..+++.|+.+||+||++|+||+.+|.+.+.|
T Consensus 82 ~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p 132 (281)
T PRK11493 82 LGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLL 132 (281)
T ss_pred cCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCC
Confidence 134789999999998775 56788999999999999999999999887654
No 58
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.62 E-value=1.2e-15 Score=135.85 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=77.9
Q ss_pred chhHHHhhhcCCCccccceEEeccChhhhh-----------ccCCCCceecCcccccCCC-----CCc-----cccCCCC
Q 022543 188 QPDELHKKMQDPNFHKEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWG-----PDI-----TVKFDPQ 246 (295)
Q Consensus 188 s~~el~~~l~~~~~~~~~~liDvR~~~e~~-----------~ghIpgAinip~~~l~~~~-----~~~-----~~~~~~~ 246 (295)
+.+++...+.. ....+||+|++.||. .||||||+|+|+..+.... .++ ...++++
T Consensus 156 ~~~~v~~~~~~----~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 231 (281)
T PRK11493 156 RLTDVLLASHE----KTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFD 231 (281)
T ss_pred cHHHHHHhhcC----CCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCC
Confidence 33455544443 346899999999995 5999999999988765310 011 0235788
Q ss_pred CcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHHHccc-ccCCC
Q 022543 247 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT-KVDPS 291 (295)
Q Consensus 247 ~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~-~~~p~ 291 (295)
++||+||++|.||..++..|+.+||+||++|+|||.+|.. ...|.
T Consensus 232 ~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~ 277 (281)
T PRK11493 232 RPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPV 277 (281)
T ss_pred CCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCc
Confidence 9999999999999999999999999999999999999986 45554
No 59
>PRK10788 periplasmic folding chaperone; Provisional
Probab=99.61 E-value=2.9e-16 Score=154.41 Aligned_cols=95 Identities=18% Similarity=0.259 Sum_probs=86.4
Q ss_pred CCCCceEEEeeEEeccchHHHHHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCcccceeCCCCcHHHHHHHhcCCCCcee
Q 022543 84 GGGDREILVQHLLVKEDDLNLLSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA 162 (295)
Q Consensus 84 ~~~~~~~~~~~Il~~~~~~~~a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~g~is 162 (295)
...+++++++||+++.++. |++++++|++|++|+++|++||+|+ ++.+||+|||+..+.++++|..+++ +++|++|
T Consensus 265 ~~~~e~~~~~~i~~~~~~~--A~~~~~~l~~G~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~-~~~G~vs 341 (623)
T PRK10788 265 FTQPERKRYSIIQTKTEAE--AKAVLDELKKGADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGL-KEKGQLS 341 (623)
T ss_pred cCChhheeeeEEEECCHHH--HHHHHHHHhCCCCHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhc-cCCCCcC
Confidence 4567889999999986654 9999999999999999999999998 9999999999999999999999987 6889999
Q ss_pred -eeeecCceeeeehhhhhhh
Q 022543 163 -RCKTKFGWHLLQVLSEREA 181 (295)
Q Consensus 163 -pv~~~~G~~ii~v~~~~~~ 181 (295)
|+++..||||+++.+..+.
T Consensus 342 ~pv~t~~G~~Iikv~~~~~~ 361 (623)
T PRK10788 342 GVIKSSVGFLIVRLDDIQPA 361 (623)
T ss_pred CcEEECCeEEEEEEEeeccC
Confidence 9999999999999886653
No 60
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.61 E-value=4.2e-16 Score=139.58 Aligned_cols=86 Identities=36% Similarity=0.440 Sum_probs=67.3
Q ss_pred ceEEeccChhhhhccCCCCceecCcccccCCC------------------------------CCccccCCCCCcEEEEeC
Q 022543 205 AQLIDVREPEEVALSSLPGFQVLPLRQFGSWG------------------------------PDITVKFDPQKDTYVMCH 254 (295)
Q Consensus 205 ~~liDvR~~~e~~~ghIpgAinip~~~l~~~~------------------------------~~~~~~~~~~~~iv~~C~ 254 (295)
..+||||++.||..||||||+|+|+....+.. .......+++..||+||.
T Consensus 3 ~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC~ 82 (311)
T TIGR03167 3 DPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYCW 82 (311)
T ss_pred CEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEEC
Confidence 47899999999999999999999995432110 011112244556999995
Q ss_pred -CChhHHHHHHHHHHcCCCCeEEecchHHHcccccCCC
Q 022543 255 -HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 255 -~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
+|.||..++++|+.+|| +|++|+||+.+|...+.+.
T Consensus 83 ~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~ 119 (311)
T TIGR03167 83 RGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQ 119 (311)
T ss_pred CCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhh
Confidence 79999999999999999 6999999999998876543
No 61
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.61 E-value=1.6e-15 Score=138.92 Aligned_cols=81 Identities=31% Similarity=0.521 Sum_probs=70.8
Q ss_pred cceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHHH
Q 022543 204 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 283 (295)
Q Consensus 204 ~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 283 (295)
+.++||+|++.||..+|||||+|+|+..+..... ...++++++||+||.+|.||..+++.|+..||+||++|+||+.+
T Consensus 274 ~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~--~~~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~ 351 (355)
T PRK05597 274 GVTLIDVREPSEFAAYSIPGAHNVPLSAIREGAN--PPSVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEG 351 (355)
T ss_pred CCEEEECCCHHHHccCcCCCCEEeCHHHhhhccc--cccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHH
Confidence 4689999999999999999999999988654211 12357889999999999999999999999999999999999999
Q ss_pred ccc
Q 022543 284 YAT 286 (295)
Q Consensus 284 W~~ 286 (295)
|.+
T Consensus 352 W~~ 354 (355)
T PRK05597 352 WLD 354 (355)
T ss_pred Hhh
Confidence 964
No 62
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.61 E-value=2.2e-15 Score=136.44 Aligned_cols=102 Identities=16% Similarity=0.311 Sum_probs=80.4
Q ss_pred cccchhHHHhhhcCCCccccceEEecc--------C-hhhhhccCCCCceecCcccccCCCCCc-------------c--
Q 022543 185 QDIQPDELHKKMQDPNFHKEAQLIDVR--------E-PEEVALSSLPGFQVLPLRQFGSWGPDI-------------T-- 240 (295)
Q Consensus 185 ~~is~~el~~~l~~~~~~~~~~liDvR--------~-~~e~~~ghIpgAinip~~~l~~~~~~~-------------~-- 240 (295)
..++++++.+.+.+ .+..+||+| . ..+|..||||||+|+|+..+....... +
T Consensus 22 ~lvs~~~L~~~l~~----~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~ 97 (320)
T PLN02723 22 PVVSVDWLHANLRE----PDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSA 97 (320)
T ss_pred ceecHHHHHHHhcC----CCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHH
Confidence 35888999999875 467899996 3 378999999999999987654321111 1
Q ss_pred ccCCCCCcEEEEeCCChh-HHHHHHHHHHcCCCCeEEecchHHHcccccCC
Q 022543 241 VKFDPQKDTYVMCHHGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 290 (295)
Q Consensus 241 ~~~~~~~~iv~~C~~g~r-s~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~p 290 (295)
..+.++++|||||..|.+ +.++++.|+.+||+||++|+||+.+|..++.|
T Consensus 98 ~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~p 148 (320)
T PLN02723 98 LGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYD 148 (320)
T ss_pred cCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCC
Confidence 124578999999998865 56888999999999999999999999987765
No 63
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.61 E-value=9e-16 Score=149.12 Aligned_cols=101 Identities=17% Similarity=0.274 Sum_probs=82.2
Q ss_pred ccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccC-------CCC------Ccc--ccCCCCCcEE
Q 022543 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGS-------WGP------DIT--VKFDPQKDTY 250 (295)
Q Consensus 186 ~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~-------~~~------~~~--~~~~~~~~iv 250 (295)
.++.+++.+.+.+ .+..+||+|++.+|..||||||+|+|+..+.. ... ..+ ..++++++||
T Consensus 10 lIs~~eL~~~l~~----~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VV 85 (610)
T PRK09629 10 VIEPNDLLERLDA----PELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYV 85 (610)
T ss_pred eecHHHHHHHhcC----CCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEE
Confidence 4888999999976 46889999999999999999999998754211 001 111 1347899999
Q ss_pred EEeCCC-hhHHHHHHHHHHcCCCCeEEecchHHHcccccCC
Q 022543 251 VMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 290 (295)
Q Consensus 251 ~~C~~g-~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~p 290 (295)
+||++| .++.++++.|+.+||++|++|+||+.+|..++.|
T Consensus 86 vYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p 126 (610)
T PRK09629 86 VYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALP 126 (610)
T ss_pred EECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCc
Confidence 999977 5788999999999999999999999999988765
No 64
>PRK12450 foldase protein PrsA; Reviewed
Probab=99.60 E-value=4.4e-16 Score=140.08 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=76.3
Q ss_pred eEEEeeEEeccchHHHHHHHHHHhC-CCCcHHHHHHHhCCCCCccCCCcccceeC-CCCcHHHHHHHhcCCCCcee-ee-
Q 022543 89 EILVQHLLVKEDDLNLLSELQRRVS-QGKDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKVA-RC- 164 (295)
Q Consensus 89 ~~~~~~Il~~~~~~~~a~~i~~~i~-~g~~F~~~a~~~S~d~~~~~gG~lg~~~~-~~~~~~~~~~~~~l~~g~is-pv- 164 (295)
+++++||++..++ .|++++++|+ .|++|+++|++||.|+ ..||++||... ++|+|+|..+++.|++|++| ||
T Consensus 148 ~~~~~~I~~~~~~--~A~~i~~~l~~~G~dF~~lAk~~S~~~--~~~g~~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i~ 223 (309)
T PRK12450 148 TMTAEIMQFEKEE--DAKAALEAVKAEGADFAAIAKEKTIAA--DKKTTYTFDSGETTLPAEVVRAASGLKEGNRSEIIT 223 (309)
T ss_pred cceeEEEEeCCHH--HHHHHHHHHHhcCCCHHHHHHHhCCCc--ccCCcccccCCCCCCCHHHHHHHHcCCCCCcccccc
Confidence 6889999997664 4999999998 5999999999999986 46789998753 57999999999999999998 55
Q ss_pred -----eecCceeeeehhhhhh
Q 022543 165 -----KTKFGWHLLQVLSERE 180 (295)
Q Consensus 165 -----~~~~G~~ii~v~~~~~ 180 (295)
++++||||+++.+++.
T Consensus 224 ~~~pv~t~~GyhIikl~~~~~ 244 (309)
T PRK12450 224 ALDPATSKRTYHIIKVTKKAT 244 (309)
T ss_pred CCCccccCCceEEEEEecccc
Confidence 5899999999998764
No 65
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=99.59 E-value=1e-15 Score=137.87 Aligned_cols=88 Identities=16% Similarity=0.273 Sum_probs=78.3
Q ss_pred eEEEeeEEeccchHHHHHHHHHHhC-CCCcHHHHHHHhCCCCCccCCCcccceeC-CCCcHHHHHHHhcCCCCcee-eee
Q 022543 89 EILVQHLLVKEDDLNLLSELQRRVS-QGKDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKVA-RCK 165 (295)
Q Consensus 89 ~~~~~~Il~~~~~~~~a~~i~~~i~-~g~~F~~~a~~~S~d~~~~~gG~lg~~~~-~~~~~~~~~~~~~l~~g~is-pv~ 165 (295)
+++++||++..++. |++++++|+ +|++|+++|++||. ++.+||++||+.. +.++++|.+++|.|++|++| ||+
T Consensus 145 ~~~~~~I~~~~~~~--A~~i~~~l~~~G~dF~~lA~~~S~--s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~pv~ 220 (310)
T PRK01326 145 EVTAQIIRLDNEDK--AKSVLEEAKAEGADFAQIAKENTT--TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSDVIS 220 (310)
T ss_pred cccchhhhHhhhHH--HHHHHHHHHhCCCCHHHHHHHhCc--ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCCcee
Confidence 57999999876654 999999998 59999999999999 6789999999987 46888999999999999999 998
Q ss_pred e------cCceeeeehhhhhh
Q 022543 166 T------KFGWHLLQVLSERE 180 (295)
Q Consensus 166 ~------~~G~~ii~v~~~~~ 180 (295)
+ .+||||+++.+++.
T Consensus 221 t~~~~~~~~GyhIikv~~~~~ 241 (310)
T PRK01326 221 VLDPTAYQSKYYIVKVTKKTE 241 (310)
T ss_pred cCCCCcCCceEEEEEEeccCC
Confidence 7 67999999998764
No 66
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.59 E-value=4.4e-15 Score=144.36 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=80.0
Q ss_pred ccchhHHHhhhcCCCccccceEEeccChhhhh--------ccCCCCceecCcccccCCCC---------Ccc--ccCCCC
Q 022543 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVA--------LSSLPGFQVLPLRQFGSWGP---------DIT--VKFDPQ 246 (295)
Q Consensus 186 ~is~~el~~~l~~~~~~~~~~liDvR~~~e~~--------~ghIpgAinip~~~l~~~~~---------~~~--~~~~~~ 246 (295)
.++.+++.+.+.+ .+..+||+|++.||. .||||||+|+|+..+..... .++ ..++++
T Consensus 148 ~v~~e~v~~~l~~----~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~ 223 (610)
T PRK09629 148 TATREYLQSRLGA----ADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPD 223 (610)
T ss_pred cccHHHHHHhhCC----CCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCC
Confidence 3677888888765 457899999999995 59999999999865422110 111 235789
Q ss_pred CcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHHHcccc
Q 022543 247 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK 287 (295)
Q Consensus 247 ~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~ 287 (295)
++||+||++|.+|+.++..|+.+||+||++|+|||.+|...
T Consensus 224 ~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~ 264 (610)
T PRK09629 224 KEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNH 264 (610)
T ss_pred CCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCC
Confidence 99999999999999999999999999999999999999865
No 67
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.58 E-value=1.1e-15 Score=138.73 Aligned_cols=95 Identities=31% Similarity=0.475 Sum_probs=72.8
Q ss_pred hhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCC--------------------------CC----
Q 022543 189 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG--------------------------PD---- 238 (295)
Q Consensus 189 ~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~--------------------------~~---- 238 (295)
..++..++. .+..+||||++.||..||||||+|+|+....+.. ..
T Consensus 5 ~~~~~~~~~-----~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~ 79 (345)
T PRK11784 5 AQDFRALFL-----NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREE 79 (345)
T ss_pred HHHHHHHHh-----CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHH
Confidence 345555543 3568999999999999999999999995432100 00
Q ss_pred ccccCC-CCCcEEEEe-CCChhHHHHHHHHHHcCCCCeEEecchHHHcccccC
Q 022543 239 ITVKFD-PQKDTYVMC-HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 289 (295)
Q Consensus 239 ~~~~~~-~~~~iv~~C-~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~ 289 (295)
....++ ++++||+|| ++|.||..+++.|...|| +|++|.||+.+|.+.+.
T Consensus 80 ~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~ 131 (345)
T PRK11784 80 AWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVI 131 (345)
T ss_pred HHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhH
Confidence 011223 788999999 588999999999999999 69999999999987654
No 68
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.57 E-value=9.8e-16 Score=132.45 Aligned_cols=167 Identities=18% Similarity=0.356 Sum_probs=122.3
Q ss_pred eEEeccc--------hHHHHHHHHHHhCCCCcHHHHHHHhCCCCCccCCCcccceeCCCCcHHHHHHHhcCCCCc-eeee
Q 022543 94 HLLVKED--------DLNLLSELQRRVSQGKDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNK-VARC 164 (295)
Q Consensus 94 ~Il~~~~--------~~~~a~~i~~~i~~g~~F~~~a~~~S~d~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~g~-ispv 164 (295)
.|||+.+ ..+.++.+.+.|.+-..|+++.-+.|..... . +. .|--.+...+.+|...+ +.|-
T Consensus 38 rillA~EGINgtvsG~~e~~~~~~~~l~a~~~f~~l~~K~s~~~~~------p-F~--r~kVk~kkEIV~lg~~ddv~p~ 108 (308)
T COG1054 38 RILLAHEGINGTVSGSAEAIEAYMAWLRADPGFADLRFKISEADEK------P-FW--RLKVKLKKEIVALGVEDDVDPL 108 (308)
T ss_pred EEEEccCCcceeEecCHHHHHHHHHHHHhCcccccceeeeccccCC------C-cc--eEEEeehhhheecCCCCCcCcc
Confidence 4666654 3456888899998888999998887765410 0 11 11112333444554433 3332
Q ss_pred eecCceeeeehhhhhhhhhccccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCcccc--
Q 022543 165 KTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVK-- 242 (295)
Q Consensus 165 ~~~~G~~ii~v~~~~~~~~~~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~-- 242 (295)
.. ....++++++.+++.+ ++.++||.|...||+.||+.||++.+...|.++..+....
T Consensus 109 ~~----------------vG~yl~p~~wn~~l~D----~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~ 168 (308)
T COG1054 109 EN----------------VGTYLSPKDWNELLSD----PDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLD 168 (308)
T ss_pred cc----------------ccCccCHHHHHHHhcC----CCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHH
Confidence 11 1234778999999987 6789999999999999999999999998887765443221
Q ss_pred CCCCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHHHcccccC
Q 022543 243 FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 289 (295)
Q Consensus 243 ~~~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~ 289 (295)
.-++++|+.||.+|.|+..+..+|...||++|+.|+||+..|..+..
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~~ 215 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDVG 215 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhhcC
Confidence 23678999999999999999999999999999999999999986654
No 69
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.54 E-value=5.1e-15 Score=129.85 Aligned_cols=109 Identities=27% Similarity=0.455 Sum_probs=91.3
Q ss_pred ccccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCcc-ccC-CCCCcEEEEeCCChhHHH
Q 022543 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT-VKF-DPQKDTYVMCHHGMRSLQ 261 (295)
Q Consensus 184 ~~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~-~~~-~~~~~iv~~C~~g~rs~~ 261 (295)
..+++..++++++++. +...++|||++.||+.+|+|+|+|||+.++.....+.. ..+ ...++|+++|+.|+.|..
T Consensus 316 ~~Rvsv~d~k~il~~~---~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~~~~~~~~~~~~~~I~ViCrrGNdSQ~ 392 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSG---AKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSGKKLQGDLNTESKDIFVICRRGNDSQR 392 (427)
T ss_pred hhcccHHHHHHHHhcC---CCeEEEeccCcceEEEEecccccccchhhhhhhhhhhhcccccccCCCEEEEeCCCCchHH
Confidence 4578889999999875 67899999999999999999999999998876543111 112 245789999999999999
Q ss_pred HHHHHHHcCC-CCeEEecchHHHcccccCCCCCCC
Q 022543 262 VAQWLQTQGF-RRVFNVSGGIHAYATKVDPSIPTY 295 (295)
Q Consensus 262 a~~~L~~~G~-~~v~~l~GG~~~W~~~~~p~~p~~ 295 (295)
|++.|++..+ -+|+.+.||+.+|..+.+|++|.|
T Consensus 393 Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~fP~Y 427 (427)
T KOG2017|consen 393 AVRILREKFPDSSVRDVIGGLKAWAAKVDPNFPLY 427 (427)
T ss_pred HHHHHHhhCCchhhhhhhhHHHHHHHhcCcCCCCC
Confidence 9999998543 468889999999999999999998
No 70
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=99.54 E-value=7.1e-15 Score=127.34 Aligned_cols=111 Identities=16% Similarity=0.062 Sum_probs=90.1
Q ss_pred ccCchhh-hccccCCCCCCCCCCCceEEEeeEEeccchHHHHHHHHHHhCCCCcHHHHHHHhCCCCCccCCCcccceeCC
Q 022543 65 SFTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGKDLSDLAVEHSICPSKGEGGMLGWVRKG 143 (295)
Q Consensus 65 ~~~~~e~-~~y~~~~~~~~~~~~~~~~~~~~Il~~~~~~~~a~~i~~~i~~g~~F~~~a~~~S~d~~~~~gG~lg~~~~~ 143 (295)
.+++.|. ++|..+. ..+..+.+|+++||+++++ ...++++++++++|.+|+++|.++++.. ...+|.+||++.+
T Consensus 116 ~vse~ev~~~Y~~~~---~~f~~~~~~~~~hIlv~~~-~~~a~~~~~~l~~g~~f~~la~~~~~~~-~~~~~~~~~~~~~ 190 (232)
T TIGR02925 116 KPSPEEAKSYFQEHP---QLFAERKLYNLQEIALPPD-MELLDELRAMVENGKPLEDILAWLKAKN-VPFNASSAARPAE 190 (232)
T ss_pred CCCHHHHHHHHHhCH---HhcCCCceEEEEEEEecCC-hhHHHHHHHHHhcCCCHHHHHHHhhhcC-cccccccccCchh
Confidence 4445444 3444433 1235678999999999854 3358999999999999999999988653 3457789999999
Q ss_pred CCcHHHHHHHhcCCCCceeeeeecCceeeeehhhhhh
Q 022543 144 QLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSERE 180 (295)
Q Consensus 144 ~~~~~~~~~~~~l~~g~ispv~~~~G~~ii~v~~~~~ 180 (295)
+++|+|.+++++|++|+++|+++++||||+++.++.+
T Consensus 191 ~l~~~~~~a~~~l~~G~is~v~s~~G~hiikv~~~~~ 227 (232)
T TIGR02925 191 QLPAEILAVLAKLKPGAPLVVQGPNNVLILVLADAQP 227 (232)
T ss_pred hCCHHHHHHHHhCCCCCeEEeecCCceEEEEEecccc
Confidence 9999999999999999999999999999999987654
No 71
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.53 E-value=1.1e-14 Score=133.83 Aligned_cols=92 Identities=28% Similarity=0.434 Sum_probs=75.0
Q ss_pred ccchhHHHhhhcCCCccccceEEeccChhhhhccCCC---CceecCcccccCCCC--CccccCCCCCcEEEEeCCChhHH
Q 022543 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLP---GFQVLPLRQFGSWGP--DITVKFDPQKDTYVMCHHGMRSL 260 (295)
Q Consensus 186 ~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIp---gAinip~~~l~~~~~--~~~~~~~~~~~iv~~C~~g~rs~ 260 (295)
.++++++.+++.+ ...++||||++.||+.|||| ||+|||+..+..... ..+..++++ +|||||.+|.||.
T Consensus 272 ~~~~~el~~~l~~----~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~~~~~l~~~~~~-~Ivv~C~sG~RS~ 346 (370)
T PRK05600 272 RTDTTSLIDATLN----GSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDADILHALSPIDGD-NVVVYCASGIRSA 346 (370)
T ss_pred ccCHHHHHHHHhc----CCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchhhhhhccccCCC-cEEEECCCChhHH
Confidence 4678888888866 34589999999999999998 699999988854210 112333444 9999999999999
Q ss_pred HHHHHHHHcCCCC-eEEecchHH
Q 022543 261 QVAQWLQTQGFRR-VFNVSGGIH 282 (295)
Q Consensus 261 ~a~~~L~~~G~~~-v~~l~GG~~ 282 (295)
.++..|++.||++ |++|.||+.
T Consensus 347 ~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 347 DFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred HHHHHHHHcCCCCceEEeccccC
Confidence 9999999999986 999999975
No 72
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.51 E-value=3.3e-14 Score=112.37 Aligned_cols=97 Identities=16% Similarity=0.083 Sum_probs=72.3
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCC---C--------------CccccCCCCCcE
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG---P--------------DITVKFDPQKDT 249 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~---~--------------~~~~~~~~~~~i 249 (295)
++++++.+.+... +...++||+|+..+|..||||||+|+|+..+.... . ..+.. .++++|
T Consensus 2 is~~~l~~~l~~~--~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~V 78 (132)
T cd01446 2 IDCAWLAALLREG--GERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRR-GESLAV 78 (132)
T ss_pred cCHHHHHHHHhcC--CCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhc-CCCCeE
Confidence 6778899888753 14689999999999999999999999987532100 0 00111 157899
Q ss_pred EEEeCCChh---------HHHHHHHHHH--cCCCCeEEecchHHHccc
Q 022543 250 YVMCHHGMR---------SLQVAQWLQT--QGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 250 v~~C~~g~r---------s~~a~~~L~~--~G~~~v~~l~GG~~~W~~ 286 (295)
||||.++.+ +..++..|.. .|+.+|++|+||+.+|..
T Consensus 79 VvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 79 VVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred EEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 999998875 5566666666 466889999999999965
No 73
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.35 E-value=3.5e-12 Score=112.21 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=78.9
Q ss_pred cccchhHHHhhhcCCCc-cccceEEeccCh--hhhhccCCCCceecCcccccCCCCCc---------------cccCCCC
Q 022543 185 QDIQPDELHKKMQDPNF-HKEAQLIDVREP--EEVALSSLPGFQVLPLRQFGSWGPDI---------------TVKFDPQ 246 (295)
Q Consensus 185 ~~is~~el~~~l~~~~~-~~~~~liDvR~~--~e~~~ghIpgAinip~~~l~~~~~~~---------------~~~~~~~ 246 (295)
.-++++.+.+.+..... ..+..+++.+.. .+|..+|||||++++++......... ...+..|
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~d 90 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRND 90 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCCC
Confidence 34778888888765311 013445555444 89999999999999987654322110 1235688
Q ss_pred CcEEEEeCCC-hhHHHHHHHHHHcCCCCeEEecchHHHcccccCCC
Q 022543 247 KDTYVMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 247 ~~iv~~C~~g-~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
.+||+|.+.+ .-|+++++.|+.+|++||++|+||+.+|.+++.|.
T Consensus 91 ~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~ 136 (285)
T COG2897 91 DTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPL 136 (285)
T ss_pred CEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCc
Confidence 9999998754 55789999999999999999999999999988764
No 74
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.29 E-value=4.2e-12 Score=120.99 Aligned_cols=73 Identities=26% Similarity=0.389 Sum_probs=64.6
Q ss_pred ccceEEeccChhhhhccCCCC----ceecCcccccCCCCCccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEec
Q 022543 203 KEAQLIDVREPEEVALSSLPG----FQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVS 278 (295)
Q Consensus 203 ~~~~liDvR~~~e~~~ghIpg----Ainip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~ 278 (295)
.+..+||+|++.||+.+|||| |+|+|+..+... ...+++++++|+||.+|.||..++..|+..||+||+++.
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~----~~~l~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ----FGDLDQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYR 481 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH----HhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecC
Confidence 456899999999999999999 999999888543 334678999999999999999999999999999998875
Q ss_pred c
Q 022543 279 G 279 (295)
Q Consensus 279 G 279 (295)
+
T Consensus 482 ~ 482 (482)
T PRK01269 482 P 482 (482)
T ss_pred C
Confidence 3
No 75
>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.5e-12 Score=111.98 Aligned_cols=95 Identities=39% Similarity=0.681 Sum_probs=84.1
Q ss_pred CCceEEEeeEEeccchHHHHHHHHHHhCCC-----CcHHHHHHHhCCCCCcc-CCCcccceeCCCCcHHHHHHHhcCCCC
Q 022543 86 GDREILVQHLLVKEDDLNLLSELQRRVSQG-----KDLSDLAVEHSICPSKG-EGGMLGWVRKGQLVPEFEEVAFTTPLN 159 (295)
Q Consensus 86 ~~~~~~~~~Il~~~~~~~~a~~i~~~i~~g-----~~F~~~a~~~S~d~~~~-~gG~lg~~~~~~~~~~~~~~~~~l~~g 159 (295)
..++++.+||+++.++. +.++..+++.+ .+|+++|++||.|++.. .||++||...+.++|+|..+++.+++|
T Consensus 165 ~~~~~~~~~i~~~~~~~--a~~~~~~~~~~~~~~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~~~g 242 (320)
T COG0760 165 KVTEVQARHILVKAEAK--AKEALALLKKGVREAKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVG 242 (320)
T ss_pred HHHHHhhcccccCchHh--HHHHHHHHHhccccccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhccCc
Confidence 35799999999999877 77777777666 79999999999999555 577889999999999999999999999
Q ss_pred cee-eeeecCceeeeehhhhhhhh
Q 022543 160 KVA-RCKTKFGWHLLQVLSEREAS 182 (295)
Q Consensus 160 ~is-pv~~~~G~~ii~v~~~~~~~ 182 (295)
+++ |+++.+|||++++.++++..
T Consensus 243 ~~~~pv~t~~g~~ii~v~~~~~~~ 266 (320)
T COG0760 243 EVSAPVKTSFGYHIIKVEKKRDAK 266 (320)
T ss_pred ccccccccchHHHHHHHHhhhhhh
Confidence 999 99999999999998877654
No 76
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=3.8e-11 Score=105.79 Aligned_cols=106 Identities=18% Similarity=0.212 Sum_probs=77.9
Q ss_pred hhhccccchhHHHhhhcCCC--ccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccC---CCCCcEEEEeC-
Q 022543 181 ASLLQDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF---DPQKDTYVMCH- 254 (295)
Q Consensus 181 ~~~~~~is~~el~~~l~~~~--~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~---~~~~~iv~~C~- 254 (295)
...+..|+++.+..+++... ....+.+||+|-+.||.+|||+||+||+..+............ .+...+||||.
T Consensus 152 ~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCef 231 (325)
T KOG3772|consen 152 SQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKDGVPSGSKRVILIFHCEF 231 (325)
T ss_pred cccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhccccccccccCceeEEEEeee
Confidence 35577899999999987632 1123678999999999999999999999866433211000111 12356889998
Q ss_pred CChhHHHHHHHHHH------------cCCCCeEEecchHHHccc
Q 022543 255 HGMRSLQVAQWLQT------------QGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 255 ~g~rs~~a~~~L~~------------~G~~~v~~l~GG~~~W~~ 286 (295)
+..|+..+|..|+. +-|+.+|+|+||+..|-.
T Consensus 232 Sq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~ 275 (325)
T KOG3772|consen 232 SQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFS 275 (325)
T ss_pred ccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHH
Confidence 67888899999983 367789999999999964
No 77
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.96 E-value=1.1e-09 Score=94.77 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=69.3
Q ss_pred ccceEEeccChhhhh-----------ccCCCCceecCcccccCCCCCc-----------cccCCCCCcEEEEeCCChhHH
Q 022543 203 KEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGPDI-----------TVKFDPQKDTYVMCHHGMRSL 260 (295)
Q Consensus 203 ~~~~liDvR~~~e~~-----------~ghIpgAinip~~~l~~~~~~~-----------~~~~~~~~~iv~~C~~g~rs~ 260 (295)
.++..+|.|...+|. .||||||+|+|+.++....+.. ...+..++|+|+-|+.|..++
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~ 250 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISAS 250 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHH
Confidence 568899999998885 4899999999998765433211 123456899999999999999
Q ss_pred HHHHHHHHcCCCCeEEecchHHHccc
Q 022543 261 QVAQWLQTQGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 261 ~a~~~L~~~G~~~v~~l~GG~~~W~~ 286 (295)
..+..|...| .++.+++|+|.+|..
T Consensus 251 ~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 251 IIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred HHHHHHHhcC-CCcceecccHHHHhh
Confidence 9999999999 789999999999985
No 78
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.59 E-value=1.9e-07 Score=80.98 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=74.9
Q ss_pred cchhHHHhhhcCCCccccceEEecc---------ChhhhhccCCCCceecCcccccCCCC---------Cc------ccc
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVR---------EPEEVALSSLPGFQVLPLRQFGSWGP---------DI------TVK 242 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR---------~~~e~~~ghIpgAinip~~~l~~~~~---------~~------~~~ 242 (295)
++++.+.+.+.+ ....+||.. ...||...|||||+++.++....... +. ...
T Consensus 7 v~~~~v~~~~~~----~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 7 VSVKWVMENLGN----HGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cChHHHHHhCcC----CCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 556677777765 456777764 34677888999999988765522110 00 123
Q ss_pred CCCCCcEEEEeC--CChh-HHHHHHHHHHcCCCCeEEecchHHHcccccCCC
Q 022543 243 FDPQKDTYVMCH--HGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 291 (295)
Q Consensus 243 ~~~~~~iv~~C~--~g~r-s~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~p~ 291 (295)
+++++.+|+|.+ .|.- |.+++|.++-.||++|..|+||+..|.+.+.|.
T Consensus 83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~ 134 (286)
T KOG1529|consen 83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPV 134 (286)
T ss_pred CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcc
Confidence 567889999998 6664 678999999999999999999999999877653
No 79
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.16 E-value=1.2e-06 Score=76.73 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=73.2
Q ss_pred hhccccchhHHHhhhcCCCccc---cceEEeccChhhhhccCCCCceecCcccccCCCCCcccc-CCCCCcEEEEeC-CC
Q 022543 182 SLLQDIQPDELHKKMQDPNFHK---EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVK-FDPQKDTYVMCH-HG 256 (295)
Q Consensus 182 ~~~~~is~~el~~~l~~~~~~~---~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~-~~~~~~iv~~C~-~g 256 (295)
..+.+|+++.++.+++.. +.. ...+||+|-+.||.+|||-.||||.-.+-.. ..++.+ +.--.-+|++|. +.
T Consensus 239 Ds~~RIs~etlk~vl~g~-~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~--~~F~hkplThp~aLifHCEfSs 315 (427)
T COG5105 239 DSIQRISVETLKQVLEGM-YNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLG--LLFRHKPLTHPRALIFHCEFSS 315 (427)
T ss_pred cchhhcCHHHHHHHHhch-hhhhhhceeEEeecceeeecCceeeeeeecchHHHHH--HHHHhccccCceeEEEEeeccc
Confidence 456789999998888653 222 3569999999999999999999997543111 011211 122345889998 67
Q ss_pred hhHHHHHHHHHHc------------CCCCeEEecchHHHcc
Q 022543 257 MRSLQVAQWLQTQ------------GFRRVFNVSGGIHAYA 285 (295)
Q Consensus 257 ~rs~~a~~~L~~~------------G~~~v~~l~GG~~~W~ 285 (295)
.|+..+|.+|+.+ -|+.|++|+||+...-
T Consensus 316 hRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy 356 (427)
T COG5105 316 HRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFY 356 (427)
T ss_pred ccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHh
Confidence 8999999999853 4678999999997754
No 80
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=97.89 E-value=1.1e-06 Score=65.10 Aligned_cols=88 Identities=10% Similarity=-0.045 Sum_probs=74.9
Q ss_pred CCchhhhhccccccccccccCcchhhhccCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCCCC-CCC
Q 022543 8 LASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGG 85 (295)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~~~-~~~ 85 (295)
|+|+.+.+.++.....++.++.++..+...|+.+ +.||++..++.+||.+||+..+.+.+.++.+.|.++.++++ +..
T Consensus 4 ~~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs~pi~ 83 (95)
T PF00639_consen 4 VKPPPSDEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALFALKPGEVSKPIE 83 (95)
T ss_dssp EESTTSCCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHHTSTTTSBEEEEE
T ss_pred EECCCchhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHHhCCCCCcCCCEE
Confidence 3455588889999999999999999998779999 99999999999999999999999999999999999887654 345
Q ss_pred CCceEEEeeE
Q 022543 86 GDREILVQHL 95 (295)
Q Consensus 86 ~~~~~~~~~I 95 (295)
.+..|++-.+
T Consensus 84 t~~G~~Ii~v 93 (95)
T PF00639_consen 84 TDNGYHIIKV 93 (95)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 5666665543
No 81
>PRK10788 periplasmic folding chaperone; Provisional
Probab=97.88 E-value=9.4e-05 Score=73.26 Aligned_cols=149 Identities=10% Similarity=0.040 Sum_probs=98.4
Q ss_pred cCcchhhhccCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCCCCCCCCCceEEEeeEEeccch----
Q 022543 27 SSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDD---- 101 (295)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~~~~~~~~~~~~~~~Il~~~~~---- 101 (295)
+.+.+..+ .+|+.+ +.||.|+.++.+||+|||+..+.++++|+.+.+.....++.+...+..+|+-++.=...+
T Consensus 287 ~~~~l~~G-~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~~~~G~vs~pv~t~~G~~Iikv~~~~~~~~~~ 365 (623)
T PRK10788 287 VLDELKKG-ADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKP 365 (623)
T ss_pred HHHHHhCC-CCHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhccCCCCcCCcEEECCeEEEEEEEeeccCCCCC
Confidence 34455554 699999 999999999999999999999999999999988533334455666777877777543210
Q ss_pred -------------H--------HHHHHHHHHhC-CCCcHHHHHHHhCCCCCccCCCcccceeCCCC-----cHHHHHHHh
Q 022543 102 -------------L--------NLLSELQRRVS-QGKDLSDLAVEHSICPSKGEGGMLGWVRKGQL-----VPEFEEVAF 154 (295)
Q Consensus 102 -------------~--------~~a~~i~~~i~-~g~~F~~~a~~~S~d~~~~~gG~lg~~~~~~~-----~~~~~~~~~ 154 (295)
. ..++.+...+. .|.+|+++|++..-.. ...+|++++.. .+.+..++|
T Consensus 366 ~~evk~~I~~~l~~~ka~~~~~~~~~~l~~~~~~~~~~l~~~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~aF 440 (623)
T PRK10788 366 LSEVRDDIAAKVKQEKALDAYYALQQKVSDAASNDNESLASAEQAAGVKA-----VQTGWFSRDNVPAELNFKPVAQAIF 440 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHcCCeE-----EEcCCcCCCCCccccCCHHHHHHHc
Confidence 0 12333444443 4568998888754222 01123333221 256888899
Q ss_pred cC-------CCCcee-eeeec-Cceeeeehhhhhhh
Q 022543 155 TT-------PLNKVA-RCKTK-FGWHLLQVLSEREA 181 (295)
Q Consensus 155 ~l-------~~g~is-pv~~~-~G~~ii~v~~~~~~ 181 (295)
.. ++|..| ++... .+|.++++.+..+.
T Consensus 441 ~~~v~~~~~~~g~~s~~i~~~~~~~~vv~v~~~~p~ 476 (623)
T PRK10788 441 NGGLVGENGAPGSNSDVITVDGDRAFVLRISEHKPE 476 (623)
T ss_pred ChHhhhccccCCCCCCCEEEcCCEEEEEEEcccCcC
Confidence 84 468888 67764 46888888876543
No 82
>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A.
Probab=97.86 E-value=4.3e-06 Score=64.04 Aligned_cols=89 Identities=21% Similarity=0.315 Sum_probs=59.6
Q ss_pred CCCceEEEeeEEeccchHHHHHHHHHHhC--CCCcHHHHHHHhCCCCCccCCCcccceeC-CCCcHHHHHHHhcCCCCce
Q 022543 85 GGDREILVQHLLVKEDDLNLLSELQRRVS--QGKDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKV 161 (295)
Q Consensus 85 ~~~~~~~~~~Il~~~~~~~~a~~i~~~i~--~g~~F~~~a~~~S~d~~~~~gG~lg~~~~-~~~~~~~~~~~~~l~~g~i 161 (295)
..+..+.+.+++++.+.. ++...+.++ ++.+|..++..++.+. ..++|... ..++++|..+++.|+.|++
T Consensus 18 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~l~~g~~ 90 (121)
T PF13145_consen 18 SQPERRIFQIIFFKAEDA--AEAAKALAKKKAGEDFAALAKKYSIDQ-----SDLGIFTDESDLPPEFADALFKLKPGEV 90 (121)
T ss_dssp --EEEEEEEEEEESSCCH--HHHHHHHHHHHCHHHHHHHHHCTHCCC-----CCCCCCETTHHH-HHHHCCHTT-STT-E
T ss_pred CCcccEEEEEEEeCCHHH--HHHHHHHHhhcccchHHHHHHhcCCcc-----ccccccccccccCHHHHHHHhcCCCCCe
Confidence 455666666667766644 333333333 4468999998887764 23344444 3577899999999999999
Q ss_pred e-eeeecCceeeeehhhhhh
Q 022543 162 A-RCKTKFGWHLLQVLSERE 180 (295)
Q Consensus 162 s-pv~~~~G~~ii~v~~~~~ 180 (295)
| |+.+..||+++++....+
T Consensus 91 s~~i~~~~~~~v~~v~~~~~ 110 (121)
T PF13145_consen 91 SGPIESGNGYYVVKVKERNP 110 (121)
T ss_dssp EEEEEETTEEEEEEEEEEEE
T ss_pred eeeEEECCEEEEEEEEeecC
Confidence 9 899999999999887665
No 83
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=5.4e-06 Score=64.39 Aligned_cols=74 Identities=9% Similarity=-0.065 Sum_probs=61.1
Q ss_pred cccccccccccCcchhhhccCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCCCCC-CCCCceEE
Q 022543 17 TQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSP-GGGDREIL 91 (295)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~~~~-~~~~~~~~ 91 (295)
|+..++-|+.|+..+..+..+|..| .++| |..++..||+||+|.+++|-+|||+|+|.+.+++++. ..+..-+|
T Consensus 82 keeA~~llk~~~~~l~~g~~~f~elA~q~S-dCSSaKRGGDLG~fgrgqMqk~FEdaafaL~~ge~SgiV~t~SG~H 157 (163)
T KOG3259|consen 82 KEEALDLLKGYHEDLKSGSGDFEELAKQRS-DCSSAKRGGDLGFFGRGQMQKPFEDAAFALKVGEMSGIVDTDSGVH 157 (163)
T ss_pred HHHHHHHHHHhHHHhhcCcccHHHHHHhhc-ChhhhccCCcccccccccccccchhhhhhcccccccCceecCCceE
Confidence 4555677889999999999999999 6665 5789999999999999999999999999999987554 33444444
No 84
>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A.
Probab=97.74 E-value=6.4e-06 Score=63.52 Aligned_cols=83 Identities=11% Similarity=-0.029 Sum_probs=62.7
Q ss_pred hhhccccccccccccCcchhhhccCchhh-hhhccccCCCCCCCccceee-cccccCchhhhccccCCCCC-CCCCCCce
Q 022543 13 LCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHI-ISRSFTSPKAASFSSGTEGS-SPGGGDRE 89 (295)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~~e~~~y~~~~~~~-~~~~~~~~ 89 (295)
+...++......+++.+.+.. .++|+.+ ..||+|+.++.+||++||+. ...+.++|+.++|.++++++ .+...+..
T Consensus 29 ~~~~~~~ak~~a~~i~~~l~~-G~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~~~l~~G~is~~v~s~~G 107 (117)
T PF13616_consen 29 SSRSKEEAKKKADSILKQLKS-GADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAAFSLKVGEISGPVESPNG 107 (117)
T ss_dssp --------HHHHHHHHHHHHC-TCCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHHHHS-TTECTCEEEETTE
T ss_pred ccchhHHHHHHHHHHHHHHHC-CCCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHHHcCCCCCCCCeEEECCE
Confidence 344444456667777888874 5699999 99999999999999999999 89999999999999998876 44667777
Q ss_pred EEEeeEE
Q 022543 90 ILVQHLL 96 (295)
Q Consensus 90 ~~~~~Il 96 (295)
+|+-+++
T Consensus 108 ~hIikv~ 114 (117)
T PF13616_consen 108 YHIIKVT 114 (117)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 7776654
No 85
>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=9.6e-05 Score=54.49 Aligned_cols=47 Identities=13% Similarity=0.011 Sum_probs=41.6
Q ss_pred hhhhccCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCC
Q 022543 31 SLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEG 80 (295)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~ 80 (295)
+..++ .|... .+||+|. ++.+|+|||+.++.|+.||.+++|.++.+.
T Consensus 60 Lk~G~-~F~evAA~YSEdk--ar~GGDLGW~~RG~MvGPFQdaAFalpvs~ 107 (133)
T KOG3258|consen 60 LKSGM-KFNEVAAQYSEDK--ARQGGDLGWMTRGSMVGPFQDAAFALPVST 107 (133)
T ss_pred HHccc-chHHHHHHhccCc--cccCCcccceeccccccchhhhhhcccccc
Confidence 44554 88888 9999997 899999999999999999999999998764
No 86
>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional
Probab=97.16 E-value=7.6e-05 Score=57.35 Aligned_cols=80 Identities=10% Similarity=-0.058 Sum_probs=64.5
Q ss_pred hccccccccccccCcchhhhccCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCCCC-CCCCCceEEE
Q 022543 15 AITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILV 92 (295)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~~~-~~~~~~~~~~ 92 (295)
+.+......++.+++.+..+..+|+.+ ..||++ .+..++|.+||+....+.++|..+.+.+++++++ +...+..+|+
T Consensus 32 ~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~-~~~~~gG~lG~~~~~~L~~~~~~a~~~L~~Geis~Pi~t~~G~hI 110 (115)
T PTZ00356 32 RSKEEAIKELAKWREQIVSGEKTFEEIARQRSDC-GSAAKGGDLGFFGRGQMQKPFEDAAFALKVGEISDIVHTDSGVHI 110 (115)
T ss_pred ccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCC-chhhcCccceeEcccccCHHHHHHHHcCCCCCCCCcEEECCEEEE
Confidence 445566677888999998776799999 999988 5677999999999999999999999999887764 4566667766
Q ss_pred eeE
Q 022543 93 QHL 95 (295)
Q Consensus 93 ~~I 95 (295)
-++
T Consensus 111 lk~ 113 (115)
T PTZ00356 111 ILR 113 (115)
T ss_pred EEE
Confidence 554
No 87
>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional
Probab=96.98 E-value=0.00049 Score=50.72 Aligned_cols=70 Identities=6% Similarity=-0.124 Sum_probs=55.5
Q ss_pred cccCcchhhhccCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCCC-CCCCCCceEEEeeEE
Q 022543 25 NLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS-SPGGGDREILVQHLL 96 (295)
Q Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~~-~~~~~~~~~~~~~Il 96 (295)
+.+++.+..+ .+|+.+ .+||+++.. ..+|.+||+....+.++|+.+.+.++.+++ .+...+..+|+-+++
T Consensus 19 ~~i~~~l~~g-~~F~~la~~~S~~~~~-~~gG~lg~~~~~~l~~~f~~a~~~l~~G~vs~Pi~t~~G~hIlkv~ 90 (93)
T PRK15441 19 LDLLEQIKNG-ADFGKLAKKHSICPSG-KRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 90 (93)
T ss_pred HHHHHHHHCC-CCHHHHHHHhCCCchh-hcCccceeecccccCHHHHHHHHhCCCCCcCCcEEcCCEEEEEEEE
Confidence 3455566555 699999 999999854 689999999999999999999999988765 456677777776654
No 88
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=96.74 E-value=0.00047 Score=60.59 Aligned_cols=75 Identities=9% Similarity=-0.131 Sum_probs=58.6
Q ss_pred ccccccccCcchhhhccCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCCCC-CCCCCceEEEeeE
Q 022543 20 LIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHL 95 (295)
Q Consensus 20 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~~~-~~~~~~~~~~~~I 95 (295)
.....+.+++.+..+..+|+.+ +.||.++ ++.+||++||...+.+.++|..+.+.+++|.++ +...+.-+|+-.+
T Consensus 141 a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~-sa~~GGdlG~~~~~~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlkl 217 (256)
T TIGR02933 141 VRTRILAILRRLRGKPAAFAEQAMRHSHCP-TAMEGGLLGWVSRGLLYPQLDAALFQLAEGELSPPIESEIGWHLLLC 217 (256)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHhCCCC-ccccCCccCCcCCCccChHHHHHHHcCCCCCcCCceeeCCeEEEEEE
Confidence 3344456666776666789999 9999998 667999999999999999999999999887755 4566666655543
No 89
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=96.58 E-value=0.0014 Score=58.81 Aligned_cols=72 Identities=8% Similarity=-0.024 Sum_probs=58.1
Q ss_pred ccCcchhhhccCchhh-hhhccccCCCCCCCccceee--cccccCchhhhccccCCCCC--CCCCCCceEEEeeEEec
Q 022543 26 LSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHI--ISRSFTSPKAASFSSGTEGS--SPGGGDREILVQHLLVK 98 (295)
Q Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--~~~~~~~~e~~~y~~~~~~~--~~~~~~~~~~~~~Il~~ 98 (295)
.+.+.+..| .+|+.+ +.||.|+.+..+||++||+. ...++++|+.++|.+++|++ .+...+..||+-.++=.
T Consensus 160 ~v~~~l~~G-~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a~~~L~~Geiss~pv~t~~GyhIikv~~~ 236 (298)
T PRK04405 160 TVIKKLKDG-KDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTAAFKLKNGEYTTTPVKTTYGYEVIKMIKH 236 (298)
T ss_pred HHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHHHHcCCCCCccCCCEEeCCeEEEEEEeec
Confidence 344456555 599999 99999999999999999775 35789999999999998875 46678888888888643
No 90
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=96.15 E-value=0.0037 Score=55.86 Aligned_cols=71 Identities=3% Similarity=-0.063 Sum_probs=57.6
Q ss_pred ccCcchhhhccCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCCCCC-CCCCceEEEeeEEe
Q 022543 26 LSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSP-GGGDREILVQHLLV 97 (295)
Q Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~~~~-~~~~~~~~~~~Il~ 97 (295)
..+..+..+ .+|+.+ +.||.++.+..+||.+||+..+.+.++|+.+.+.+++|.+++ ...+..||+-++.=
T Consensus 148 ~i~~~l~~G-~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L~~GevS~pi~t~~G~hIikv~~ 220 (287)
T PRK03095 148 KVKEELGQG-KSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVKSQFGYHIIKVTD 220 (287)
T ss_pred HHHHHHHCC-CCHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhCCCCCcCCceEECCEEEEEEEee
Confidence 445566666 599999 999999999999999999999999999999999998876654 55666677666653
No 91
>COG2603 Predicted ATPase [General function prediction only]
Probab=95.83 E-value=0.0028 Score=55.52 Aligned_cols=82 Identities=30% Similarity=0.445 Sum_probs=56.6
Q ss_pred ccceEEeccChhhhhccCCCCceecCcccccCC------C-----------------CCcc-------ccCCCCCcEEEE
Q 022543 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW------G-----------------PDIT-------VKFDPQKDTYVM 252 (295)
Q Consensus 203 ~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~------~-----------------~~~~-------~~~~~~~~iv~~ 252 (295)
++..++|||.+.||..|+.|+++|+|.-.-.+. . +++. ..+-.+.|+-++
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~e~~~~Gi~ 93 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQEENPVGIL 93 (334)
T ss_pred cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCccee
Confidence 467899999999999999999999997321100 0 0000 011245666666
Q ss_pred eC-CChhHHHHHHHH-HHcCCCCeEEecchHHHcc
Q 022543 253 CH-HGMRSLQVAQWL-QTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 253 C~-~g~rs~~a~~~L-~~~G~~~v~~l~GG~~~W~ 285 (295)
|. +|.||...+.+| ...|++ +--+.||..+..
T Consensus 94 c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 94 CARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred eccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 86 677999999999 778874 456678887653
No 92
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=95.81 E-value=0.0049 Score=54.99 Aligned_cols=71 Identities=6% Similarity=-0.018 Sum_probs=57.0
Q ss_pred ccCcchhhhccCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCCCC-CCCCCceEEEeeEEe
Q 022543 26 LSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLLV 97 (295)
Q Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~~~-~~~~~~~~~~~~Il~ 97 (295)
.+++.+..+ .+|+.+ +.||.++.+..+||.+||+..+.+.++|+.++|.+++|+++ +...+..||+-.+.=
T Consensus 150 ~i~~~l~~G-~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~Lk~GevS~pi~t~~G~hIikv~~ 222 (283)
T PRK02998 150 EVKEKVNNG-EDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQVSEPVKTTYGYHIIKVTD 222 (283)
T ss_pred HHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHcCCCCCcCCceEECCEEEEEEEec
Confidence 455566555 599999 99999999999999999999999999999999999888765 445666666655543
No 93
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=95.36 E-value=0.01 Score=53.07 Aligned_cols=69 Identities=9% Similarity=-0.046 Sum_probs=56.0
Q ss_pred cCcchhhhccCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCCCC-CCCCCceEEEeeEE
Q 022543 27 SSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLL 96 (295)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~~~-~~~~~~~~~~~~Il 96 (295)
++..+..+ .+|+.+ +.||.++.+..+||.+||+..+.+.++|+.+.|.++.|.++ +...+..+|+-.+.
T Consensus 153 i~~~l~~G-~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~L~~GevS~pI~t~~G~hIikv~ 223 (285)
T PRK03002 153 IKKKLDAG-ASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQISNPVKSPNGYHIIKLT 223 (285)
T ss_pred HHHHHHCC-CCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHcCCCCCcCCcEEECCEEEEEEEe
Confidence 34455544 699999 99999999889999999999999999999999999887654 45666677666664
No 94
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=94.28 E-value=0.014 Score=55.72 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=64.0
Q ss_pred hhccccchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccC-----CCCCcEEEEeCCC
Q 022543 182 SLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF-----DPQKDTYVMCHHG 256 (295)
Q Consensus 182 ~~~~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~-----~~~~~iv~~C~~g 256 (295)
...++++.+++..+ +...++|.|...||..+|+++++|+|++ +.+..-..+..+ ..++.+|++....
T Consensus 619 e~~prmsAedl~~~-------~~l~v~d~r~~~ef~r~~~s~s~nip~~-~~ea~l~~~~~l~~~~~~~~~~~v~~~~~~ 690 (725)
T KOG1093|consen 619 EHCPRISAEDLIWL-------KMLYVLDTRQESEFQREHFSDSINIPFN-NHEADLDWLRFLPGIVCSEGKKCVVVGKND 690 (725)
T ss_pred hcCccccHHHHHHH-------HHHHHHhHHHHHHHHHhhccccccCCcc-chHHHHHHhhcchHhHHhhCCeEEEeccch
Confidence 34455666555443 2457899999999999999999999998 322111111111 2345566666665
Q ss_pred hhHHHHHHHHHHcCCCCeEEecchHHHcc
Q 022543 257 MRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 257 ~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
..++.....+..+.+.++.++++|++.+.
T Consensus 691 K~~~e~~~~~~~mk~p~~cil~~~~~~~~ 719 (725)
T KOG1093|consen 691 KHAAERLTELYVMKVPRICILHDGFNNID 719 (725)
T ss_pred HHHHHHhhHHHHhcccHHHHHHHHHhhcC
Confidence 66666667776667888889999998543
No 95
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=93.97 E-value=0.0024 Score=57.80 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=51.9
Q ss_pred hhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCCCCCccccCCCCCcEEEEeCC--ChhH----HHH
Q 022543 189 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHH--GMRS----LQV 262 (295)
Q Consensus 189 ~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~--g~rs----~~a 262 (295)
++++++.+.+ ...++|+|....|..+||||++|+|...+..+.+++.. .+..+++++.-.. +... ..+
T Consensus 18 ~~~~~~~l~~-----~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~-~~~~~~i~l~~~~~~~~~f~~l~~~~ 91 (314)
T PRK00142 18 PEAFRDEHLA-----LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKA-DPRFADIRFKISEDDGHAFPRLSVKV 91 (314)
T ss_pred HHHHHHHHHH-----HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhh-CcCCCCceEEeccccCCCcccceeee
Confidence 4566666653 35689999999999999999999999777666554432 2234555555332 1222 345
Q ss_pred HHHHHHcCCC-CeE
Q 022543 263 AQWLQTQGFR-RVF 275 (295)
Q Consensus 263 ~~~L~~~G~~-~v~ 275 (295)
...|..+|++ ++.
T Consensus 92 ~~eLv~~G~d~~v~ 105 (314)
T PRK00142 92 RKEIVALGLDDDID 105 (314)
T ss_pred eeeeeecCCCCCCC
Confidence 5555666774 443
No 96
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=93.43 E-value=0.067 Score=48.39 Aligned_cols=55 Identities=13% Similarity=0.009 Sum_probs=41.3
Q ss_pred cCcchhhhccCchhh-hhhccccCCCCCCCccceeeccc-ccCchhhhccccCCCCCCCC
Q 022543 27 SSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISR-SFTSPKAASFSSGTEGSSPG 84 (295)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~e~~~y~~~~~~~~~~ 84 (295)
+.+.+.....+|+.+ +.||. ++.+||++||+.... +.++|+.++|.+++|+++.+
T Consensus 162 i~~~l~~~G~dF~~lA~~~S~---s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~p 218 (310)
T PRK01326 162 VLEEAKAEGADFAQIAKENTT---TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSDV 218 (310)
T ss_pred HHHHHHhCCCCHHHHHHHhCc---ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCCc
Confidence 334454334599999 99987 567899999987654 45579999999988876554
No 97
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=93.04 E-value=0.21 Score=39.30 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=43.1
Q ss_pred ccchhHHHhhhcCCCccccceEEeccChhhhhccC----------CCCc--eecCcccccCC---CCCccccC-CCCCcE
Q 022543 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSS----------LPGF--QVLPLRQFGSW---GPDITVKF-DPQKDT 249 (295)
Q Consensus 186 ~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~gh----------IpgA--inip~~~l~~~---~~~~~~~~-~~~~~i 249 (295)
.++.+++..+... .=..+||.|+..|-.... -+|- +++|+..-.-. ...+...+ ..++||
T Consensus 14 qlt~~d~~~L~~~----GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~~~~~pv 89 (135)
T TIGR01244 14 QLTKADAAQAAQL----GFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIGAAEGPV 89 (135)
T ss_pred CCCHHHHHHHHHC----CCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 4566666655433 224799999876643211 0222 34554321000 00000111 246899
Q ss_pred EEEeCCChhHHHHHHHHHH-cCC
Q 022543 250 YVMCHHGMRSLQVAQWLQT-QGF 271 (295)
Q Consensus 250 v~~C~~g~rs~~a~~~L~~-~G~ 271 (295)
++||.+|.|+..++..+.. .|.
T Consensus 90 L~HC~sG~Rt~~l~al~~~~~g~ 112 (135)
T TIGR01244 90 LAYCRSGTRSSLLWGFRQAAEGV 112 (135)
T ss_pred EEEcCCChHHHHHHHHHHHHcCC
Confidence 9999999998876654432 454
No 98
>PRK12450 foldase protein PrsA; Reviewed
Probab=92.83 E-value=0.091 Score=47.51 Aligned_cols=68 Identities=6% Similarity=-0.106 Sum_probs=47.6
Q ss_pred cCcchhhhccCchhh-hhhccccCCCCCCCccceee-cccccCchhhhccccCCCCCCCC-------CCCceEEEeeEEe
Q 022543 27 SSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHI-ISRSFTSPKAASFSSGTEGSSPG-------GGDREILVQHLLV 97 (295)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~~e~~~y~~~~~~~~~~-------~~~~~~~~~~Il~ 97 (295)
+.+.+.....+|+.+ +.||.++ ..+|.++|.. ...++++|+.++|.+.+|++++. ..+..||+-.+.=
T Consensus 165 i~~~l~~~G~dF~~lAk~~S~~~---~~~g~~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i~~~~pv~t~~GyhIikl~~ 241 (309)
T PRK12450 165 ALEAVKAEGADFAAIAKEKTIAA---DKKTTYTFDSGETTLPAEVVRAASGLKEGNRSEIITALDPATSKRTYHIIKVTK 241 (309)
T ss_pred HHHHHHhcCCCHHHHHHHhCCCc---ccCCcccccCCCCCCCHHHHHHHHcCCCCCccccccCCCccccCCceEEEEEec
Confidence 444554324699999 9999764 4567888765 34799999999999988876542 3555666655543
No 99
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=92.33 E-value=0.13 Score=46.95 Aligned_cols=73 Identities=7% Similarity=-0.151 Sum_probs=57.1
Q ss_pred cccCcchhhhccCchhh-hhhccccCCCCCCCccceeec--ccccCchhhhccccCCCCCC-CCCCCceEEEeeEEec
Q 022543 25 NLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHII--SRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLLVK 98 (295)
Q Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~--~~~~~~~e~~~y~~~~~~~~-~~~~~~~~~~~~Il~~ 98 (295)
+.+++.+..+ .+|+.+ +.||.++.++.++|.+||... ..+.+++..+.|.++.|+++ +...+..+++-.+.=.
T Consensus 211 ~~~~~~l~~g-~~F~~la~~~s~~~~~~~~~g~lg~~~~~~~~l~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~~~ 287 (336)
T PRK00059 211 KKVKKRLDKG-EDFAKVAKEVSQDPGSKDKGGDLGDVPYSDSGYDKEFMDGAKALKEGEISAPVKTQFGYHIIKAIKK 287 (336)
T ss_pred HHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcccccccccCccCHHHHHHHHcCCCCCcCccEecCCeEEEEEEEee
Confidence 4455566566 499999 999999999999999999887 66788899999999887765 4566677777666543
No 100
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=85.09 E-value=1.1 Score=33.86 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=34.7
Q ss_pred ccchhHHHhhhcCCCccccceEEeccChhhhhccCCC--------------CceecCccc-------ccCCCCCccccCC
Q 022543 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLP--------------GFQVLPLRQ-------FGSWGPDITVKFD 244 (295)
Q Consensus 186 ~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIp--------------gAinip~~~-------l~~~~~~~~~~~~ 244 (295)
.++++++.++-+.+ =..||+.|+..|-. +-| .-+++|+.. +..+ ...+..
T Consensus 14 Q~~~~d~~~la~~G----fktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f-~~~l~~-- 84 (110)
T PF04273_consen 14 QPSPEDLAQLAAQG----FKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAF-ADALES-- 84 (110)
T ss_dssp S--HHHHHHHHHCT------EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHH-HHHHHT--
T ss_pred CCCHHHHHHHHHCC----CcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHH-HHHHHh--
Confidence 57778888776653 24789999775521 111 123455432 1110 011222
Q ss_pred CCCcEEEEeCCChhHHHHHHHH
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWL 266 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L 266 (295)
..+||.+||++|.||..++..-
T Consensus 85 ~~~Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 85 LPKPVLAHCRSGTRASALWALA 106 (110)
T ss_dssp TTTSEEEE-SCSHHHHHHHHHH
T ss_pred CCCCEEEECCCChhHHHHHHHH
Confidence 3579999999999997666543
No 101
>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.68 E-value=0.49 Score=41.79 Aligned_cols=49 Identities=8% Similarity=-0.051 Sum_probs=41.6
Q ss_pred hccCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCCCC
Q 022543 34 IFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS 82 (295)
Q Consensus 34 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~~~ 82 (295)
...+|..+ +.+|.++.....++.++|...+.++++|+.+.|.+..+.++
T Consensus 196 ~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~~~g~~~ 245 (320)
T COG0760 196 AKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVGEVS 245 (320)
T ss_pred ccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhccCcccc
Confidence 44799999 99999998777667777888999999999999999887544
No 102
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=84.64 E-value=0.59 Score=40.77 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=55.3
Q ss_pred cchhHHHhhhcCCCccccceEEeccChhhhhccCCCCceecCcccccCC-----C-C--Ccc-----ccCCC----CCcE
Q 022543 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW-----G-P--DIT-----VKFDP----QKDT 249 (295)
Q Consensus 187 is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~-----~-~--~~~-----~~~~~----~~~i 249 (295)
++..++...+.. ....++|+|+ +..||.+|+|+-+..+... . + .++ ....+ ..++
T Consensus 6 ~s~~wlnr~l~~----~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~v 77 (343)
T KOG1717|consen 6 KSVAWLNRQLEL----GNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTV 77 (343)
T ss_pred HHHHHHHhhccc----CceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCccee
Confidence 456777777766 4588999998 7789999999765433210 0 0 000 01112 2567
Q ss_pred EEEeCC--------ChhH--HHHHHHHHHcCCCCeEEecchHHHcccc
Q 022543 250 YVMCHH--------GMRS--LQVAQWLQTQGFRRVFNVSGGIHAYATK 287 (295)
Q Consensus 250 v~~C~~--------g~rs--~~a~~~L~~~G~~~v~~l~GG~~~W~~~ 287 (295)
|+|..+ |..+ ......++..|+ .++.|.||+..+..+
T Consensus 78 ilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 78 ILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAE 124 (343)
T ss_pred eecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhh
Confidence 888765 1101 012244556787 489999999887654
No 103
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=81.31 E-value=0.66 Score=41.95 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=45.1
Q ss_pred ccchhHHHhhhcCCCccccceEEeccChhhhhc---cCCC-CceecCcccccCCCCCccccCCCCCcEEEEeCCChhHH
Q 022543 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL---SSLP-GFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSL 260 (295)
Q Consensus 186 ~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~---ghIp-gAinip~~~l~~~~~~~~~~~~~~~~iv~~C~~g~rs~ 260 (295)
-+..+++.+.+.+ .+..+||+|...+|.+ |||| |... +-..|...+...+..++++++|++-|.+...+.
T Consensus 137 g~gKt~Ll~~L~~----~~~~VvDlr~~a~hrGs~fG~~~~~~qp-sq~~fe~~L~~~l~~~~~~~~i~~e~es~~ig~ 210 (311)
T TIGR03167 137 GSGKTELLHALAN----AGAQVLDLEGLANHRGSSFGALGLGPQP-SQKRFENALAEALRRLDPGRPIFVEDESRRIGR 210 (311)
T ss_pred CcCHHHHHHHHhc----CCCeEEECCchHHhcCcccCCCCCCCCC-chHHHHHHHHHHHHhCCCCceEEEEeCchhhcc
Confidence 3666788888876 4578999999999998 8988 5321 112232222222334577888999988755443
No 104
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=72.31 E-value=4.4 Score=32.89 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=23.2
Q ss_pred CCCCcEEEE-eC----CChhHHHHHHHHHHcCCCCeEEecchHHHc
Q 022543 244 DPQKDTYVM-CH----HGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284 (295)
Q Consensus 244 ~~~~~iv~~-C~----~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 284 (295)
+++..++++ |. .|..-..++..|+++|..+..+||||-+.-
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 445455544 55 367778999999999999999999987543
No 105
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=67.40 E-value=2.7 Score=36.02 Aligned_cols=58 Identities=12% Similarity=-0.053 Sum_probs=44.2
Q ss_pred cCchhh-hhhccccCCCCCCCccceeecccccCchhhhccccCCCCCCCCCCCceEEEeeE
Q 022543 36 QKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREILVQHL 95 (295)
Q Consensus 36 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~y~~~~~~~~~~~~~~~~~~~~I 95 (295)
..|+.+ ..++.. +. ..++.++|....++.++|..+.+.+++|.+++...+..+|+-.+
T Consensus 164 ~~f~~la~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~a~~~l~~G~is~v~s~~G~hiikv 222 (232)
T TIGR02925 164 KPLEDILAWLKAK-NV-PFNASSAARPAEQLPAEILAVLAKLKPGAPLVVQGPNNVLILVL 222 (232)
T ss_pred CCHHHHHHHhhhc-Cc-ccccccccCchhhCCHHHHHHHHhCCCCCeEEeecCCceEEEEE
Confidence 377778 665543 33 34667899999999999999999999887767677777776665
No 106
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=65.25 E-value=12 Score=30.52 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCCCcEEEEeCCChh---HHHHHHHHHHcCCCCeEE
Q 022543 244 DPQKDTYVMCHHGMR---SLQVAQWLQTQGFRRVFN 276 (295)
Q Consensus 244 ~~~~~iv~~C~~g~r---s~~a~~~L~~~G~~~v~~ 276 (295)
++..+|++.|..|+. +..++++|...|++ |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 567889999998765 56899999999995 765
No 107
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.42 E-value=9.3 Score=29.36 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=18.7
Q ss_pred CCCcEEEEeCCChhHHHHHHHHH
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQ 267 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~ 267 (295)
.+.||+.||++|.||...+..-+
T Consensus 86 aegPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 86 AEGPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred hCCCEEeeecCCchHHHHHHHHH
Confidence 56899999999999987765543
No 108
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=63.29 E-value=13 Score=35.03 Aligned_cols=82 Identities=17% Similarity=0.117 Sum_probs=47.4
Q ss_pred cceEEeccChhhhhccCCCCceecCcccccCCCCC---------------ccccCCCCCcEEEEeCCChhH------HHH
Q 022543 204 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPD---------------ITVKFDPQKDTYVMCHHGMRS------LQV 262 (295)
Q Consensus 204 ~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~---------------~~~~~~~~~~iv~~C~~g~rs------~~a 262 (295)
+..+||+|+.++|..||+-.|.|+.-.-..+.... ....-..+..-+++-++|..- -..
T Consensus 326 rFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfmGsGr~EED~YmnMvi 405 (669)
T KOG3636|consen 326 RFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFMGSGRDEEDNYMNMVI 405 (669)
T ss_pred EEEEEeccchhhcccccchhhhcccHHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEeccCcchHHHHHHHHH
Confidence 46799999999999999999988753222111100 000001222445554444322 234
Q ss_pred HHHHHHcCCCCeEEecchHHHccc
Q 022543 263 AQWLQTQGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 263 ~~~L~~~G~~~v~~l~GG~~~W~~ 286 (295)
|..|++ |-..|..+.||+.....
T Consensus 406 A~FlQK-nk~yVS~~~GGy~~lh~ 428 (669)
T KOG3636|consen 406 AMFLQK-NKLYVSFVQGGYKKLHD 428 (669)
T ss_pred HHHHhc-CceEEEEecchHHHHHH
Confidence 444544 33468999999987653
No 109
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=63.25 E-value=5.8 Score=30.88 Aligned_cols=36 Identities=22% Similarity=0.125 Sum_probs=30.0
Q ss_pred EEEEeCC-ChhHHHHHHHHHHc----CCCCeEEecchHHHc
Q 022543 249 TYVMCHH-GMRSLQVAQWLQTQ----GFRRVFNVSGGIHAY 284 (295)
Q Consensus 249 iv~~C~~-g~rs~~a~~~L~~~----G~~~v~~l~GG~~~W 284 (295)
|+|+|.+ -.||..|...|+.+ +-.++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 6789985 57899988888877 557899999999888
No 110
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=57.89 E-value=15 Score=28.37 Aligned_cols=29 Identities=17% Similarity=0.389 Sum_probs=19.7
Q ss_pred CCCCcEEEEeCCCh-hHHH-HHH-HHHHcCCC
Q 022543 244 DPQKDTYVMCHHGM-RSLQ-VAQ-WLQTQGFR 272 (295)
Q Consensus 244 ~~~~~iv~~C~~g~-rs~~-a~~-~L~~~G~~ 272 (295)
..+++|+|+|..|. ||.. ++. .+...|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 56789999999884 7753 333 44556653
No 111
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=54.83 E-value=20 Score=31.21 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=24.1
Q ss_pred CcEEEEeCC---ChhHHHHHHHHHHcCCCCeEEe
Q 022543 247 KDTYVMCHH---GMRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 247 ~~iv~~C~~---g~rs~~a~~~L~~~G~~~v~~l 277 (295)
++|+++|.. |..+..+|++|...|| +|.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence 579999985 5567899999999999 47655
No 112
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=52.58 E-value=20 Score=26.27 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=26.4
Q ss_pred CCcEEEEeCCChhHHHHHHHHH----HcCCCCeEEecchHHH
Q 022543 246 QKDTYVMCHHGMRSLQVAQWLQ----TQGFRRVFNVSGGIHA 283 (295)
Q Consensus 246 ~~~iv~~C~~g~rs~~a~~~L~----~~G~~~v~~l~GG~~~ 283 (295)
.+.|++.|++|..|..++..++ +.|++ +.+-..++..
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~ 43 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGA 43 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHH
Confidence 3679999999998887777665 46774 5555555544
No 113
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=51.26 E-value=19 Score=29.50 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCcccceeCCCCc
Q 022543 105 LSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~~~~~~ 146 (295)
-+.+.+++++|..|.++..+|+.-+ -..+.|.+|.++.+.+.
T Consensus 109 P~~v~~~vl~G~ElG~v~~~~~g~~~ig~~~GaIG~lT~g~lt 151 (175)
T COG1986 109 PPRVLEEVLQGKELGEVMEEYTGIDEIGRKEGAIGVLTNGKLT 151 (175)
T ss_pred CHHHHHHHHccccHHHHHHHHcCCCCcCcccceEEEeeCCeee
Confidence 4557888999999999999999877 78899999999998875
No 114
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=50.10 E-value=21 Score=28.19 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=29.2
Q ss_pred CcEEEEeC-CChhHHHHHHHHHHcCCCCeEEecchHHHcc
Q 022543 247 KDTYVMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 247 ~~iv~~C~-~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
+.|+++|. +-.||..|...|+... .++.+...|..+|.
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~~~~ 41 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVHGLV 41 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccccCCC
Confidence 46899996 4578999999998765 35778888887773
No 115
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=50.02 E-value=20 Score=26.73 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=25.4
Q ss_pred CcEEEEeCCChhHHHHHHHHH----HcCCCCeEEecchHHH
Q 022543 247 KDTYVMCHHGMRSLQVAQWLQ----TQGFRRVFNVSGGIHA 283 (295)
Q Consensus 247 ~~iv~~C~~g~rs~~a~~~L~----~~G~~~v~~l~GG~~~ 283 (295)
+.|++.|++|..+..++..++ +.|++ +.+-..+...
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e 41 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATE 41 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHH
Confidence 358999999998887777764 46774 5555555544
No 116
>PLN02727 NAD kinase
Probab=49.19 E-value=23 Score=36.68 Aligned_cols=78 Identities=13% Similarity=0.177 Sum_probs=44.6
Q ss_pred cccchhHHHhhhcCCCccccceEEeccChhhhhccCC------------CCceecCcccccCCC----CCccccC--CCC
Q 022543 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSL------------PGFQVLPLRQFGSWG----PDITVKF--DPQ 246 (295)
Q Consensus 185 ~~is~~el~~~l~~~~~~~~~~liDvR~~~e~~~ghI------------pgAinip~~~l~~~~----~~~~~~~--~~~ 246 (295)
..++++++..+.+++ =-.||+.|+..|- .+.. -.-+++|+..-.... ..+...+ ...
T Consensus 267 gQpspe~la~LA~~G----fKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slp 341 (986)
T PLN02727 267 GQVTEEGLKWLLEKG----FKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSK 341 (986)
T ss_pred CCCCHHHHHHHHHCC----CeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcC
Confidence 467788887766542 2378999987762 2221 022456653321110 1111223 246
Q ss_pred CcEEEEeCCChhH--HHHHHHHH
Q 022543 247 KDTYVMCHHGMRS--LQVAQWLQ 267 (295)
Q Consensus 247 ~~iv~~C~~g~rs--~~a~~~L~ 267 (295)
+||++||.+|.|+ ..++.+|.
T Consensus 342 kPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 342 KPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred CCEEEECCCCCchHHHHHHHHHH
Confidence 8999999999853 46666665
No 117
>PRK13696 hypothetical protein; Provisional
Probab=49.18 E-value=25 Score=23.66 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=22.2
Q ss_pred eeEEeccchHHHHHHHHHHhCCCCcHHHHHHHhC
Q 022543 93 QHLLVKEDDLNLLSELQRRVSQGKDLSDLAVEHS 126 (295)
Q Consensus 93 ~~Il~~~~~~~~a~~i~~~i~~g~~F~~~a~~~S 126 (295)
.+|.++.++.+++. ..+.|+||+++.+++-
T Consensus 4 K~ItI~dd~Y~~L~----~kk~~~SFSevi~~L~ 33 (62)
T PRK13696 4 KTITISDDVYEKLL----EIKGDKSFSEVIRELI 33 (62)
T ss_pred ceEEeCHHHHHHHH----HHhCCCCHHHHHHHHH
Confidence 46777777655454 5567889999999876
No 118
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=49.06 E-value=30 Score=26.50 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=27.3
Q ss_pred CcEEEEeCC-ChhHHHHHHHHHHcCCCCeEEecchHHH
Q 022543 247 KDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHA 283 (295)
Q Consensus 247 ~~iv~~C~~-g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 283 (295)
+.|+++|.+ -.||..|..+|+.++-.++.+...|...
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~ 38 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEV 38 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCC
Confidence 358899964 5788888888888664567777777653
No 119
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=47.12 E-value=21 Score=27.72 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=28.0
Q ss_pred EEEEeCC-ChhHHHHHHHHHHcCCCCeEEecchHHHcc
Q 022543 249 TYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 249 iv~~C~~-g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
|+++|.+ -.||..|...|+...-.++.+...|+.+|.
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~~ 38 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAWV 38 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCCC
Confidence 5788964 578889999998754345888888888774
No 120
>PRK03941 NTPase; Reviewed
Probab=46.69 E-value=25 Score=28.96 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCcccceeCCCCc
Q 022543 105 LSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~~~~~~ 146 (295)
-..+.++|++|..+.++..++.... .+.++|.+|.++.+.+.
T Consensus 108 P~~v~~~i~~G~ELg~vmd~~~g~~ni~~~~GaIG~LT~g~vt 150 (174)
T PRK03941 108 PPLVVEEVLKGKEVGDVMSELTGIKELGRKIGAIGFLSRGMLD 150 (174)
T ss_pred CHHHHHHHHcCCCHHHHHHHHhCCCCcCcCCceEEEecCCcee
Confidence 3457788899999999999988776 89999999999998875
No 121
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=46.66 E-value=28 Score=26.62 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=33.7
Q ss_pred ceEEeccChhhhhccCCCC--ceecCcccccCCC-C-------Ccc-ccCCCCCcEEEEeCCCh-hHH-HHH-HHHHHcC
Q 022543 205 AQLIDVREPEEVALSSLPG--FQVLPLRQFGSWG-P-------DIT-VKFDPQKDTYVMCHHGM-RSL-QVA-QWLQTQG 270 (295)
Q Consensus 205 ~~liDvR~~~e~~~ghIpg--Ainip~~~l~~~~-~-------~~~-~~~~~~~~iv~~C~~g~-rs~-~a~-~~L~~~G 270 (295)
..+||++...++..-+.+| -.++|+.+..... . .++ .....+++|+|+|..|. ||. .++ ..+...|
T Consensus 29 ~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~ 108 (139)
T cd00127 29 THVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLG 108 (139)
T ss_pred CEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHcC
Confidence 3688988877641112122 2345554332110 0 001 11235689999999885 775 333 3344444
Q ss_pred C
Q 022543 271 F 271 (295)
Q Consensus 271 ~ 271 (295)
+
T Consensus 109 ~ 109 (139)
T cd00127 109 L 109 (139)
T ss_pred C
Confidence 4
No 122
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=46.61 E-value=49 Score=24.05 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=22.9
Q ss_pred cEEEEeCCChhHH-HHHHHH----HHcCCCCeEEecchHHHc
Q 022543 248 DTYVMCHHGMRSL-QVAQWL----QTQGFRRVFNVSGGIHAY 284 (295)
Q Consensus 248 ~iv~~C~~g~rs~-~a~~~L----~~~G~~~v~~l~GG~~~W 284 (295)
.|++.|++|.-+. .++..+ .+.|++ +.+....+...
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~ 44 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEI 44 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHH
Confidence 5899999998544 445554 457874 55555555443
No 123
>TIGR00258 inosine/xanthosine triphosphatase.
Probab=46.36 E-value=26 Score=28.55 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCcccceeCCCCc
Q 022543 105 LSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~~~~~~ 146 (295)
-..+.++|++|..+.++..++.... .+.++|.+|.++.+.+.
T Consensus 103 P~~v~~~i~~G~ELg~vmd~~~g~~~i~~~~GaIG~LT~g~v~ 145 (163)
T TIGR00258 103 PKVVVEKVLEGEEVGPVMEEYTGIDEIGRKEGAIGYLTAGKLT 145 (163)
T ss_pred CHHHHHHHHcCCcHHHHHHHHhCCCCcCCCCceEEEecCCccc
Confidence 3457788899999999999988876 89999999999998875
No 124
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=45.54 E-value=25 Score=25.64 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=24.7
Q ss_pred cEEEEeCCChhHHHHHHHHHH----cCCCCeEEecchHHH
Q 022543 248 DTYVMCHHGMRSLQVAQWLQT----QGFRRVFNVSGGIHA 283 (295)
Q Consensus 248 ~iv~~C~~g~rs~~a~~~L~~----~G~~~v~~l~GG~~~ 283 (295)
.|++.|++|..+..++..+++ .|++ +.+-..++..
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~ 39 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESE 39 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHH
Confidence 378999999998877777654 6774 5555555544
No 125
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=45.52 E-value=23 Score=29.08 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=18.2
Q ss_pred CCCCCcEEEEeCCC-hhHH-H-HHHHHHHcCC
Q 022543 243 FDPQKDTYVMCHHG-MRSL-Q-VAQWLQTQGF 271 (295)
Q Consensus 243 ~~~~~~iv~~C~~g-~rs~-~-a~~~L~~~G~ 271 (295)
+.++++|+|+|..| .||. . +|+.|...|.
T Consensus 102 ~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 102 LSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 35677999999977 4664 3 3344544343
No 126
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.84 E-value=18 Score=33.88 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=29.2
Q ss_pred cEEEEeCCChhH----------HHHHHHHHHcCCCCeEEecchHHHcccc
Q 022543 248 DTYVMCHHGMRS----------LQVAQWLQTQGFRRVFNVSGGIHAYATK 287 (295)
Q Consensus 248 ~iv~~C~~g~rs----------~~a~~~L~~~G~~~v~~l~GG~~~W~~~ 287 (295)
++.+||+-...+ ......|+++|| ++.+|-||+.+|..+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh-~~ivLigd~ta~IgD 80 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGH-KPIVLIGDATAMIGD 80 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCC-eEEEEecccceecCC
Confidence 889998744333 344556678998 599999999999854
No 127
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=44.43 E-value=41 Score=28.46 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=24.9
Q ss_pred CCcEEEEeCCC---hhHHHHHHHHHHcCCCCeEEec
Q 022543 246 QKDTYVMCHHG---MRSLQVAQWLQTQGFRRVFNVS 278 (295)
Q Consensus 246 ~~~iv~~C~~g---~rs~~a~~~L~~~G~~~v~~l~ 278 (295)
...|+++|.+| ..+..+|++|...|+. |.++.
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~~ 83 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVLL 83 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEEE
Confidence 56799999865 4578999999999974 66543
No 128
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=44.35 E-value=29 Score=24.53 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=20.0
Q ss_pred cEEEEeCCChhHHHHH-HHH----HHcCCCCeEEecc
Q 022543 248 DTYVMCHHGMRSLQVA-QWL----QTQGFRRVFNVSG 279 (295)
Q Consensus 248 ~iv~~C~~g~rs~~a~-~~L----~~~G~~~v~~l~G 279 (295)
+|++.|.+|..+..++ ..| .+.|++ +....+
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~ 36 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAG 36 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEe
Confidence 4799999997766554 555 456864 444433
No 129
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=43.58 E-value=27 Score=25.85 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=26.3
Q ss_pred cEEEEeCCChhHHHHHHHHHH----cCCCCeEEecchHHHc
Q 022543 248 DTYVMCHHGMRSLQVAQWLQT----QGFRRVFNVSGGIHAY 284 (295)
Q Consensus 248 ~iv~~C~~g~rs~~a~~~L~~----~G~~~v~~l~GG~~~W 284 (295)
.|++.|.+|..|..++..+++ .|++ +.+...+...-
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHHH
Confidence 378999999888888877754 6874 66666666543
No 130
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=43.19 E-value=28 Score=26.03 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=20.1
Q ss_pred CcEEEEeCCChhHHHHHHHHH----HcCCC
Q 022543 247 KDTYVMCHHGMRSLQVAQWLQ----TQGFR 272 (295)
Q Consensus 247 ~~iv~~C~~g~rs~~a~~~L~----~~G~~ 272 (295)
+.|+++|.+|..+..++..++ +.|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 579999999999988886654 35654
No 131
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=42.86 E-value=31 Score=33.46 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=31.5
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchH
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 281 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 281 (295)
-+.|+|++.+.-..+..+|..|.++|| +++.|.||-
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 367899999988888899999999999 699999974
No 132
>PRK10126 tyrosine phosphatase; Provisional
Probab=42.58 E-value=33 Score=27.09 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=29.5
Q ss_pred CcEEEEeCC-ChhHHHHHHHHHHcCCCCeEEecchHHHcc
Q 022543 247 KDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 247 ~~iv~~C~~-g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
+.|+|+|.+ -.||..|...|+..+ ..+.+...|...|.
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~~ 41 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGALV 41 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCCC
Confidence 468999974 578999999998876 35777888887773
No 133
>PRK05074 inosine/xanthosine triphosphatase; Reviewed
Probab=42.39 E-value=31 Score=28.33 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCcccceeCCCCc
Q 022543 105 LSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~~~~~~ 146 (295)
-..+..+|++|..+.++..++.... .+.++|.+|.++.+.+.
T Consensus 108 P~~v~~~i~~G~ELg~vmd~~~g~~~i~~~~GaIG~LT~g~vt 150 (173)
T PRK05074 108 PAVVLEALRQGEELGDVMDRLFGTDNIKQKGGAIGLLTAGKLT 150 (173)
T ss_pred CHHHHHHHHcCCCHHHHHHHHhCCCCcCCCCceEEEecCCcee
Confidence 3457778899999999999987776 88999999999998875
No 134
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.09 E-value=29 Score=29.49 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=30.0
Q ss_pred CCCCCcEEEE-eCCChhHHHHH--------------------HHHHHcCCCCeEEecc-hHHHccc
Q 022543 243 FDPQKDTYVM-CHHGMRSLQVA--------------------QWLQTQGFRRVFNVSG-GIHAYAT 286 (295)
Q Consensus 243 ~~~~~~iv~~-C~~g~rs~~a~--------------------~~L~~~G~~~v~~l~G-G~~~W~~ 286 (295)
+.++..|.-+ |.+|..++.++ ..|..+||.||.+..| |..+|..
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 3445554444 67777666554 3477889999987776 8899975
No 135
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=41.24 E-value=40 Score=31.50 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=32.5
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHHH
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 283 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 283 (295)
.+.+++++|++...+...+-.|+.+||. ...|.|-+..
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqmsq 336 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMSQ 336 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhhH
Confidence 4589999999999999999999999995 5688886644
No 136
>PRK03114 NTPase; Reviewed
Probab=41.20 E-value=34 Score=28.04 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCcccceeCCCCc
Q 022543 105 LSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~~~~~~ 146 (295)
-..+.++|++|..+.++..++.... .+.++|.+|.++.+.+.
T Consensus 104 P~~v~~~i~~G~ELG~vmd~~~g~~ni~~~~GaIG~LT~g~vt 146 (169)
T PRK03114 104 PDDFLAPLEAGKELSEVMEEYVQRKDIRSHEGAIGIFTDGYVD 146 (169)
T ss_pred CHHHHHHHHcCCCHHHHHHHHhCCCCcCCCCceEEEecCCcee
Confidence 3457778889999999999988776 89999999999998775
No 137
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=40.03 E-value=40 Score=32.32 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=23.7
Q ss_pred CcEEEEeCCCh---hHHHHHHHHHHcCCCCeEEe
Q 022543 247 KDTYVMCHHGM---RSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 247 ~~iv~~C~~g~---rs~~a~~~L~~~G~~~v~~l 277 (295)
++|+|+|+.|+ .+..+|++|...||+ |.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 67999998654 567899999999995 6654
No 138
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=38.62 E-value=44 Score=25.41 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=18.7
Q ss_pred CCCCcEEEEeCCCh-hHH-HHHHHH-HHcCC
Q 022543 244 DPQKDTYVMCHHGM-RSL-QVAQWL-QTQGF 271 (295)
Q Consensus 244 ~~~~~iv~~C~~g~-rs~-~a~~~L-~~~G~ 271 (295)
..+.+|+|+|..|. ||. .++.+| ...|+
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 101 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGM 101 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHHHHHHHHHHTS
T ss_pred cccceeEEEeCCCcccchHHHHHHHHHHcCC
Confidence 46789999999874 664 344444 44555
No 139
>PRK10565 putative carbohydrate kinase; Provisional
Probab=37.44 E-value=51 Score=32.03 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=24.9
Q ss_pred CCCCcEEEEeCCC---hhHHHHHHHHHHcCCCCeEEe
Q 022543 244 DPQKDTYVMCHHG---MRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 244 ~~~~~iv~~C~~g---~rs~~a~~~L~~~G~~~v~~l 277 (295)
+..++|+++|..| ..+..+|++|...||+ |.++
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 3456799999854 4577899999999994 6654
No 140
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=37.41 E-value=41 Score=23.86 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=22.0
Q ss_pred CcEEEEeCCChhHHHH-HHHH----HHcCCCCeEEecchHHHc
Q 022543 247 KDTYVMCHHGMRSLQV-AQWL----QTQGFRRVFNVSGGIHAY 284 (295)
Q Consensus 247 ~~iv~~C~~g~rs~~a-~~~L----~~~G~~~v~~l~GG~~~W 284 (295)
+.|+++|++|..+..+ +..+ .+.|.. +.+-..++..+
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~~~ 42 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAIDEL 42 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchhhC
Confidence 3589999998765543 5444 445653 34444555544
No 141
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=37.33 E-value=42 Score=22.76 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=15.4
Q ss_pred cEEEEeCCC-hhHHHHHHHHHH
Q 022543 248 DTYVMCHHG-MRSLQVAQWLQT 268 (295)
Q Consensus 248 ~iv~~C~~g-~rs~~a~~~L~~ 268 (295)
.++++|++| ..|..+...|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHH
Confidence 378999999 566667777754
No 142
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=37.12 E-value=48 Score=32.44 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=23.7
Q ss_pred CcEEEEeCCCh---hHHHHHHHHHHcCCCCeEEe
Q 022543 247 KDTYVMCHHGM---RSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 247 ~~iv~~C~~g~---rs~~a~~~L~~~G~~~v~~l 277 (295)
++|+|+|+.|+ .+..+|++|...||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 57999998654 566899999999995 6655
No 143
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=34.32 E-value=64 Score=23.86 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=28.9
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchH
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 281 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 281 (295)
.+.+++++|.+-..+..++..|...+. ++..+.|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 567899999998888888888988765 577887764
No 144
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=33.32 E-value=61 Score=20.02 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCC-CcHHHHHHHhCCCC
Q 022543 104 LLSELQRRVSQG-KDLSDLAVEHSICP 129 (295)
Q Consensus 104 ~a~~i~~~i~~g-~~F~~~a~~~S~d~ 129 (295)
.+..+...+++| .++..+|++|....
T Consensus 4 ~l~~Ai~~v~~g~~S~r~AA~~ygVp~ 30 (45)
T PF05225_consen 4 DLQKAIEAVKNGKMSIRKAAKKYGVPR 30 (45)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHT--H
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCcCH
Confidence 366677778888 59999999997654
No 145
>PRK13530 arsenate reductase; Provisional
Probab=32.70 E-value=81 Score=24.45 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=26.3
Q ss_pred CcEEEEeCC-ChhHHHHHHHHHHcCCCCeEEecchHH
Q 022543 247 KDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 247 ~~iv~~C~~-g~rs~~a~~~L~~~G~~~v~~l~GG~~ 282 (295)
+.|+++|.+ -.||..|..+|+..+-.++.+...|..
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 468999974 568888888887643246777888864
No 146
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=32.18 E-value=19 Score=31.28 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=21.2
Q ss_pred CCCCcEEEEeCCC-hhH-HHHHHHHHHcCCC
Q 022543 244 DPQKDTYVMCHHG-MRS-LQVAQWLQTQGFR 272 (295)
Q Consensus 244 ~~~~~iv~~C~~g-~rs-~~a~~~L~~~G~~ 272 (295)
.++.+|+|+|..| .|+ ..++.+|...|+.
T Consensus 168 ~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 168 KNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4678999999976 455 4667777777764
No 147
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=30.65 E-value=68 Score=26.03 Aligned_cols=27 Identities=33% Similarity=0.365 Sum_probs=18.2
Q ss_pred CCCCcEEEEeCCC-hhHH-HHHHHHHHcC
Q 022543 244 DPQKDTYVMCHHG-MRSL-QVAQWLQTQG 270 (295)
Q Consensus 244 ~~~~~iv~~C~~g-~rs~-~a~~~L~~~G 270 (295)
.++.+|+|+|..| .||. .++.+|...|
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4688999999977 4665 3455554433
No 148
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=30.43 E-value=48 Score=25.76 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=28.0
Q ss_pred cEEEEeCC-ChhHHHHHHHHHHcCCC-CeEEecchHHHc
Q 022543 248 DTYVMCHH-GMRSLQVAQWLQTQGFR-RVFNVSGGIHAY 284 (295)
Q Consensus 248 ~iv~~C~~-g~rs~~a~~~L~~~G~~-~v~~l~GG~~~W 284 (295)
.|+++|.+ -.||..|...|+...-. ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 58899974 46888888888875433 688888888765
No 149
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=29.99 E-value=65 Score=23.97 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=18.6
Q ss_pred CcEEEEeCCChhHHHHHHHHHH
Q 022543 247 KDTYVMCHHGMRSLQVAQWLQT 268 (295)
Q Consensus 247 ~~iv~~C~~g~rs~~a~~~L~~ 268 (295)
+.|.++|..|..+...+..+++
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~ 23 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKK 23 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 4689999999999888888765
No 150
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=29.55 E-value=99 Score=25.98 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=24.6
Q ss_pred CCCCCcEEEEeCC---ChhHHHHHHHHHHcCCCCeEEe
Q 022543 243 FDPQKDTYVMCHH---GMRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 243 ~~~~~~iv~~C~~---g~rs~~a~~~L~~~G~~~v~~l 277 (295)
++..++|+++|.. |..+..+|++|...|+ .|+.+
T Consensus 42 ~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~ 78 (205)
T TIGR00197 42 FPLAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL 78 (205)
T ss_pred cCCCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence 3445789999985 5567789999988775 36654
No 151
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=29.09 E-value=58 Score=24.50 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=22.5
Q ss_pred EEEeCCChhHHHHHHHHHHcCCCCeEEe
Q 022543 250 YVMCHHGMRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 250 v~~C~~g~rs~~a~~~L~~~G~~~v~~l 277 (295)
|+++++|.-+.++.+.++++|+.-|.+.
T Consensus 5 vLIanrGeia~r~~ra~r~~Gi~tv~v~ 32 (110)
T PF00289_consen 5 VLIANRGEIAVRIIRALRELGIETVAVN 32 (110)
T ss_dssp EEESS-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHhCCcceecc
Confidence 6778889999999999999999755544
No 152
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=29.00 E-value=50 Score=26.78 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=18.7
Q ss_pred CCCcEEEEeCCC-hhHHHHHHHHHH-cCCC
Q 022543 245 PQKDTYVMCHHG-MRSLQVAQWLQT-QGFR 272 (295)
Q Consensus 245 ~~~~iv~~C~~g-~rs~~a~~~L~~-~G~~ 272 (295)
...||+++|..| .|...+...||. .|+.
T Consensus 90 ~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~ 119 (164)
T PF03162_consen 90 RNYPVLIHCNHGKDRTGLVVGCLRKLQGWS 119 (164)
T ss_dssp GG-SEEEE-SSSSSHHHHHHHHHHHHTTB-
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHcCCC
Confidence 568999999876 567777777776 5664
No 153
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=28.44 E-value=71 Score=22.51 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=16.4
Q ss_pred cEEEEeCCChhHH-HHHHHHH----HcCC
Q 022543 248 DTYVMCHHGMRSL-QVAQWLQ----TQGF 271 (295)
Q Consensus 248 ~iv~~C~~g~rs~-~a~~~L~----~~G~ 271 (295)
.++++|++|..+. .+...|+ +.|+
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i 30 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGI 30 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 5899999998654 5555554 4565
No 154
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=27.24 E-value=91 Score=28.03 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=27.4
Q ss_pred CCCcEEEE---eCCChhHHHHHHHHHHcCCCCeEEe
Q 022543 245 PQKDTYVM---CHHGMRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 245 ~~~~iv~~---C~~g~rs~~a~~~L~~~G~~~v~~l 277 (295)
+++.++++ |.+|..-..+++.|++.|-.+|+.+
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 245 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCV 245 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 57888888 5689999999999999998777643
No 155
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=26.87 E-value=80 Score=24.83 Aligned_cols=39 Identities=18% Similarity=0.076 Sum_probs=29.7
Q ss_pred CcEEEEeCC-ChhHHHHHHHHHHcCCCCeEEecchHHHcc
Q 022543 247 KDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 247 ~~iv~~C~~-g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
..|+|+|.+ -.||..|-..|+...=.++.+...|..++.
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~~~ 42 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGGHP 42 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCCCC
Confidence 468999984 578989888888753368889988876543
No 156
>PF01931 NTPase_I-T: Protein of unknown function DUF84; InterPro: IPR002786 This is a family of prokaryotic proteins of unknown function.; PDB: 1U5W_E 1ZNO_B 1ZWY_D 1U14_A.
Probab=26.53 E-value=48 Score=27.11 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCcccceeCCCCc
Q 022543 105 LSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~~~~~~ 146 (295)
=..+.+.|++|..+.++..++.... .+.++|.+|.++.+.+.
T Consensus 105 P~~v~~~i~~G~ELg~v~d~~~g~~~i~~~~GaiG~LT~g~v~ 147 (168)
T PF01931_consen 105 PPEVAEEILEGKELGEVMDELFGRKNIGQKEGAIGILTNGRVT 147 (168)
T ss_dssp -HHHHHHHTTT--HHHHHHHHHTHTTGGGTTHHHHHHTTTSS-
T ss_pred CHHHHHHHHcCCCHHHHHHHHhCCCCcccCCceEEEecCCccc
Confidence 3457788889999999999988877 88999999999999875
No 157
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=26.39 E-value=80 Score=24.34 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=23.2
Q ss_pred EEEEeCC-ChhHHHHHHHHHHcCCCCeEEecchHHH
Q 022543 249 TYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHA 283 (295)
Q Consensus 249 iv~~C~~-g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 283 (295)
|+++|.+ -.||..|..+|+...=.++.+...|+..
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~~ 36 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIEA 36 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 4678864 4677777777776422467777777743
No 158
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.79 E-value=86 Score=21.88 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=12.9
Q ss_pred EEEEeCCChhH-HHHHHHHH
Q 022543 249 TYVMCHHGMRS-LQVAQWLQ 267 (295)
Q Consensus 249 iv~~C~~g~rs-~~a~~~L~ 267 (295)
++++|++|..+ ..+...|+
T Consensus 2 ilvvC~~G~~tS~ll~~kl~ 21 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVE 21 (86)
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 78999998754 44554554
No 159
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.62 E-value=1.1e+02 Score=27.77 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=27.5
Q ss_pred CCCcEEEE---eCCChhHHHHHHHHHHcCCCCeEEe
Q 022543 245 PQKDTYVM---CHHGMRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 245 ~~~~iv~~---C~~g~rs~~a~~~L~~~G~~~v~~l 277 (295)
+++.+|++ |.+|..-..+++.|++.|-..|+.+
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 251 (319)
T PRK04923 216 QGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAY 251 (319)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEE
Confidence 57788888 5689999999999999998877743
No 160
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=25.25 E-value=1e+02 Score=22.58 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=23.0
Q ss_pred CCCCcEEEEeCCChhH-HHHHHHHHHcCCC
Q 022543 244 DPQKDTYVMCHHGMRS-LQVAQWLQTQGFR 272 (295)
Q Consensus 244 ~~~~~iv~~C~~g~rs-~~a~~~L~~~G~~ 272 (295)
..+++++++.++..++ ...+..|+.+|++
T Consensus 28 ~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 28 ERGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HTTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HcCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 3578999999988777 6888999999986
No 161
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.19 E-value=85 Score=30.01 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=31.1
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHH
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 282 (295)
+++..++||++-..+..++..|+..|+ ++..+.||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~-~~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGI-AAGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCC-CeeEeeCCCC
Confidence 556779999999999999999999998 4778888763
No 162
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=25.02 E-value=1.1e+02 Score=22.42 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=18.9
Q ss_pred CcEEEEeCCChhHHHH-----HHHHHHcCCC
Q 022543 247 KDTYVMCHHGMRSLQV-----AQWLQTQGFR 272 (295)
Q Consensus 247 ~~iv~~C~~g~rs~~a-----~~~L~~~G~~ 272 (295)
.+|++.|++|.-+..+ -..|++.|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 4689999999876533 3557788985
No 163
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=24.98 E-value=77 Score=30.82 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=30.5
Q ss_pred cEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHH
Q 022543 248 DTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 248 ~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 282 (295)
.+|++|++...+..++..|...|| ++..+.|++.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~-~~~~lhG~l~ 308 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGF-KVAALHGDLP 308 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCC-eEEEecCCCC
Confidence 599999999999999999999998 5889999763
No 164
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=24.91 E-value=97 Score=29.05 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=30.4
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchH
Q 022543 246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 281 (295)
Q Consensus 246 ~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 281 (295)
...++++|++-..+...+..|...|+ ++..+.|++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~ 289 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDV 289 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCC
Confidence 46799999998899999999999998 588888875
No 165
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=24.75 E-value=89 Score=31.07 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHH
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 282 (295)
.++..|+||++-..+..++..|+..|+ ++..+.||+.
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~-~v~~~Ha~l~ 271 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGI-SAAAYHAGLD 271 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCC-CEEEecCCCC
Confidence 567899999998889999999999998 4788888863
No 166
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=24.37 E-value=1.2e+02 Score=22.14 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=18.8
Q ss_pred EEEeCCChhHHHHHHHHHHcCCCCeEEecc
Q 022543 250 YVMCHHGMRSLQVAQWLQTQGFRRVFNVSG 279 (295)
Q Consensus 250 v~~C~~g~rs~~a~~~L~~~G~~~v~~l~G 279 (295)
|++|+.|..+...+..|.+.| .+|.+++-
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEEC
Confidence 567777777777888887744 34665553
No 167
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=24.27 E-value=1.2e+02 Score=23.29 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=30.0
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCeEEecchHHHcc
Q 022543 249 TYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 249 iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 285 (295)
-|++++.|.-...++..|...|..++.++|+..-.+.
T Consensus 4 ~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~ 40 (135)
T PF00899_consen 4 RVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPS 40 (135)
T ss_dssp EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GG
T ss_pred EEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeec
Confidence 3677888888889999999999999999998765554
No 168
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.14 E-value=1.1e+02 Score=21.14 Aligned_cols=31 Identities=13% Similarity=0.227 Sum_probs=20.4
Q ss_pred eEEeccchHHHHHHHHHHhCCCCcHHHHHHHhCC
Q 022543 94 HLLVKEDDLNLLSELQRRVSQGKDLSDLAVEHSI 127 (295)
Q Consensus 94 ~Il~~~~~~~~a~~i~~~i~~g~~F~~~a~~~S~ 127 (295)
.|-|..++..++..+. ..|+||.++....-.
T Consensus 3 tIsIsdevY~rL~~~K---~~~eSFSdvI~rli~ 33 (71)
T PF02697_consen 3 TISISDEVYERLKKLK---REDESFSDVIERLIE 33 (71)
T ss_pred eEEecHHHHHHHHHHh---cCCCCHHHHHHHHHh
Confidence 3556666555554443 467899999988755
No 169
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=24.12 E-value=1.3e+02 Score=23.22 Aligned_cols=34 Identities=24% Similarity=0.185 Sum_probs=25.1
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecch
Q 022543 246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG 280 (295)
Q Consensus 246 ~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG 280 (295)
++.++++. .|..+..++..|...|..+++++.--
T Consensus 12 ~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIG-AGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45555554 57788888899999999888877543
No 170
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=24.08 E-value=1.2e+02 Score=24.91 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=27.3
Q ss_pred CCCcEEEEeC---CChhHHHHHHHHHHcCCCCeEEe
Q 022543 245 PQKDTYVMCH---HGMRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 245 ~~~~iv~~C~---~g~rs~~a~~~L~~~G~~~v~~l 277 (295)
+++.|+++.+ +|.....++..|.+.|-..|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 4678888865 79999999999999998777765
No 171
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.92 E-value=96 Score=30.62 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=31.3
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchH
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 281 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 281 (295)
.+.+++|+|++-..+..++..|...|+ ++..+.|++
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l 291 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDV 291 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCC
Confidence 467899999999999999999999998 588888875
No 172
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=23.50 E-value=1.1e+02 Score=29.42 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=26.6
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecch
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG 280 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG 280 (295)
.+..||++.. |.....||..|-+.|+.++.++.|+
T Consensus 20 ~~~kIvIIGA-G~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVIIGA-GIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred CCceEEEECC-chHHHHHHHHHHHhCCceEEEEEec
Confidence 3445655554 7777788888989999999999873
No 173
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=23.46 E-value=1.3e+02 Score=25.82 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=22.2
Q ss_pred CCCCcEEEEeCCChh-HH----HHHHHHHHcCCCCeEEe
Q 022543 244 DPQKDTYVMCHHGMR-SL----QVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 244 ~~~~~iv~~C~~g~r-s~----~a~~~L~~~G~~~v~~l 277 (295)
.++..+|++|.+-.. |. +.-..|.+.||+||++.
T Consensus 135 ~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 135 NKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred CcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 478889999985433 22 22334567899988753
No 174
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=23.38 E-value=2.3e+02 Score=25.57 Aligned_cols=72 Identities=22% Similarity=0.339 Sum_probs=37.1
Q ss_pred HHHhhhcCCCccccceEEeccChhhhhccCCC-CceecCcccccCCCCCccccCCCCCcEEEE----eCCChh--HHHHH
Q 022543 191 ELHKKMQDPNFHKEAQLIDVREPEEVALSSLP-GFQVLPLRQFGSWGPDITVKFDPQKDTYVM----CHHGMR--SLQVA 263 (295)
Q Consensus 191 el~~~l~~~~~~~~~~liDvR~~~e~~~ghIp-gAinip~~~l~~~~~~~~~~~~~~~~iv~~----C~~g~r--s~~a~ 263 (295)
++.+.... .+..++|+|.+ .... ++- |.. ..-+.++|+. |..|.+ +..+.
T Consensus 78 el~~~A~~----~g~~i~DvR~p-~~~~-~~~~g~~-----------------~~~~~~rv~~vGTDcavGK~tTal~L~ 134 (301)
T PF07755_consen 78 ELAAAAKK----NGVRIIDVRKP-PKDL-PVASGRI-----------------REVKAKRVLTVGTDCAVGKMTTALELR 134 (301)
T ss_dssp HHHCCHHC----CT--EEETTS---SS------SGG-----------------GG-SSEEEEEEESSSSSSHHHHHHHHH
T ss_pred HHHHHHHH----cCCeEeeccCC-Cccc-ccccCcc-----------------ccCCCCEEEEEccCccccHHHHHHHHH
Confidence 45554443 46789999986 3322 211 111 1224555655 455655 45778
Q ss_pred HHHHHcCCCCeEEecchHHHccc
Q 022543 264 QWLQTQGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 264 ~~L~~~G~~~v~~l~GG~~~W~~ 286 (295)
+.|++.|++ +..+.=|-.+|..
T Consensus 135 ~~l~~~G~~-a~fvaTGQTGimi 156 (301)
T PF07755_consen 135 RALRERGIN-AGFVATGQTGIMI 156 (301)
T ss_dssp HHHHHTT---EEEEE-SHHHHHC
T ss_pred HHHHHcCCC-ceEEecCCceEEE
Confidence 889999995 6666666777764
No 175
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=23.32 E-value=84 Score=20.12 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=16.9
Q ss_pred HHHHHhCCCCcHHHHHHHhCCCC
Q 022543 107 ELQRRVSQGKDLSDLAVEHSICP 129 (295)
Q Consensus 107 ~i~~~i~~g~~F~~~a~~~S~d~ 129 (295)
+|...+.+|.+..++|++|.-..
T Consensus 14 ~iI~~~e~g~s~~~ia~~fgv~~ 36 (53)
T PF04218_consen 14 EIIKRLEEGESKRDIAREFGVSR 36 (53)
T ss_dssp HHHHHHHCTT-HHHHHHHHT--C
T ss_pred HHHHHHHcCCCHHHHHHHhCCCH
Confidence 36677889999999999998765
No 176
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=23.30 E-value=44 Score=29.27 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.5
Q ss_pred CCCCCcEEEEeCCChhHHHHHHHHHHcCCCCeEE
Q 022543 243 FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFN 276 (295)
Q Consensus 243 ~~~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~ 276 (295)
+.++..+++||+.-.........|++.||.++..
T Consensus 185 Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 185 LKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred hCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence 5678999999999999999999999999987543
No 177
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.26 E-value=1e+02 Score=21.87 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=24.3
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHHH
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 283 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 283 (295)
.+.||++.- ..-.......|+..+..+|+++ ||-..
T Consensus 49 ~~~PIll~~--~~l~~~~~~~l~~~~~~~v~ii-Gg~~~ 84 (92)
T PF04122_consen 49 NNAPILLVN--NSLPSSVKAFLKSLNIKKVYII-GGEGA 84 (92)
T ss_pred cCCeEEEEC--CCCCHHHHHHHHHcCCCEEEEE-CCCCc
Confidence 355655555 4444777888888888888877 76543
No 178
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=23.19 E-value=1.2e+02 Score=28.53 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=31.4
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHH
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 282 (295)
....++++|++-..+..++..|...|+ ++..+.|++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGI-NCCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCC-CEEEecCCCC
Confidence 457899999999999999999999998 4778888763
No 179
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=23.11 E-value=1e+02 Score=28.02 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=32.1
Q ss_pred CCCCcEEEEeCCChhHHHHHHHHHHcCCC-CeEEecchH
Q 022543 244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFR-RVFNVSGGI 281 (295)
Q Consensus 244 ~~~~~iv~~C~~g~rs~~a~~~L~~~G~~-~v~~l~GG~ 281 (295)
.++.+++++|++-..+..++..|++.|.+ ++..+.|++
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 45788999999988899999999988764 688888885
No 180
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=23.09 E-value=1e+02 Score=29.25 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=31.2
Q ss_pred CCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHH
Q 022543 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 245 ~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 282 (295)
....++++|++-..+..++..|...|+ ++..+.|++.
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~ 277 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGF-SALALHGDLE 277 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence 345789999999999999999999998 5888888764
No 181
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=23.06 E-value=86 Score=31.05 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=32.3
Q ss_pred CCCCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHH
Q 022543 244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 244 ~~~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 282 (295)
..+..-|+||.+-..+...+.+|...|+ ++..|.||+.
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~-~a~~YHaGl~ 265 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGI-SAGAYHAGLS 265 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCC-ceEEecCCCC
Confidence 3556789999998889999999999998 5788888874
No 182
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=22.97 E-value=1.4e+02 Score=20.96 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=18.0
Q ss_pred CcEEEEeCCC--hhHHHHHHHHHHcCCCC
Q 022543 247 KDTYVMCHHG--MRSLQVAQWLQTQGFRR 273 (295)
Q Consensus 247 ~~iv~~C~~g--~rs~~a~~~L~~~G~~~ 273 (295)
-+|-|+-.+| ..+..++..|+..||..
T Consensus 4 v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v 32 (90)
T PF13399_consen 4 VRVEVLNGTGVSGLAARVADALRNRGFTV 32 (90)
T ss_pred eEEEEEECcCCcCHHHHHHHHHHHCCCce
Confidence 3455554433 45778888888888864
No 183
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=22.73 E-value=82 Score=29.72 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=30.6
Q ss_pred CCCCcEEEEeCCChhH----------HHHHHHHHHcCCCCeEEecchHHHccc
Q 022543 244 DPQKDTYVMCHHGMRS----------LQVAQWLQTQGFRRVFNVSGGIHAYAT 286 (295)
Q Consensus 244 ~~~~~iv~~C~~g~rs----------~~a~~~L~~~G~~~v~~l~GG~~~W~~ 286 (295)
..++++.+||+-+..+ .....+|+..|+ ++.++-||+.++..
T Consensus 29 ~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~-~~~~ligd~ta~ig 80 (410)
T PRK13354 29 KEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGH-RPVILIGGFTGKIG 80 (410)
T ss_pred hcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCC-eEEEEEcccccccC
Confidence 3567888998744332 456677788998 48899999998764
No 184
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=22.70 E-value=63 Score=26.42 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=18.0
Q ss_pred cCCCCCcEEEEeCCC-hhHH-HHHHHHHHcC
Q 022543 242 KFDPQKDTYVMCHHG-MRSL-QVAQWLQTQG 270 (295)
Q Consensus 242 ~~~~~~~iv~~C~~g-~rs~-~a~~~L~~~G 270 (295)
.+..+++|+++|.+| .|+. .||..|..+|
T Consensus 129 ~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 129 RLENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 346789999999976 4654 5677777766
No 185
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=22.48 E-value=1.5e+02 Score=24.64 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=24.9
Q ss_pred CCCcEEEE---eCCChhHHHHHHHHHHcCCCCeEEe
Q 022543 245 PQKDTYVM---CHHGMRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 245 ~~~~iv~~---C~~g~rs~~a~~~L~~~G~~~v~~l 277 (295)
+++..|++ |++|..-..++..|++.|=..|+.+
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~ 117 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYAC 117 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEE
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEE
Confidence 45666666 5688888888888888887777754
No 186
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=22.36 E-value=1.2e+02 Score=20.58 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=23.1
Q ss_pred cccCCCCCcEEEEeCCChhHHHHHHHHHH
Q 022543 240 TVKFDPQKDTYVMCHHGMRSLQVAQWLQT 268 (295)
Q Consensus 240 ~~~~~~~~~iv~~C~~g~rs~~a~~~L~~ 268 (295)
+.-+..|..|+++|+++..+......|++
T Consensus 41 ~GtIAgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 41 FGTIAGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EEEEEESSEEEEEESTTSHHHHHHHHHHT
T ss_pred EEEEeCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 33345688999999999999888888765
No 187
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=22.34 E-value=98 Score=19.78 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhCCCC-cHHHHHHHhCCC
Q 022543 101 DLNLLSELQRRVSQGK-DLSDLAVEHSIC 128 (295)
Q Consensus 101 ~~~~a~~i~~~i~~g~-~F~~~a~~~S~d 128 (295)
+.+++++|.++|.+|. +.+++.+.|...
T Consensus 4 ~~~~Le~Iv~~Le~~~~sLdes~~lyeeg 32 (53)
T PF02609_consen 4 AMERLEEIVEKLESGELSLDESLKLYEEG 32 (53)
T ss_dssp HHHHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3467999999999998 999999888653
No 188
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=22.29 E-value=1.5e+02 Score=27.00 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCCcHHHHHHHhCCCC-CccCCCcccceeCCCCc
Q 022543 105 LSELQRRVSQGKDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 146 (295)
Q Consensus 105 a~~i~~~i~~g~~F~~~a~~~S~d~-~~~~gG~lg~~~~~~~~ 146 (295)
-..+.+.|.+|.-..++..++.... .+.++|.+|.++.+.+.
T Consensus 256 P~~v~~~i~~G~ELg~vmd~~~g~~ni~~~~GaIG~LT~g~v~ 298 (322)
T PRK01170 256 PDKIIDMIKRGMEVSDAYEKYSGIKDIDKKMGIIGKISKGKIR 298 (322)
T ss_pred CHHHHHHHHcCCCHHHHHHHHhCCCCcCCCCceEEEecCCcee
Confidence 3567888899999999999988776 89999999999998875
No 189
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=21.73 E-value=1.1e+02 Score=24.58 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=30.6
Q ss_pred cccCCCCCcEEEEeCCCh--hHHHHHHHHHH---cCCCCeEEecchHHHcc
Q 022543 240 TVKFDPQKDTYVMCHHGM--RSLQVAQWLQT---QGFRRVFNVSGGIHAYA 285 (295)
Q Consensus 240 ~~~~~~~~~iv~~C~~g~--rs~~a~~~L~~---~G~~~v~~l~GG~~~W~ 285 (295)
+..++++..+|+.+..|. .|...|..|.. .|..++..+-||-.+..
T Consensus 61 l~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~ 111 (155)
T PF02590_consen 61 LKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGLS 111 (155)
T ss_dssp HCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--
T ss_pred HhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCCC
Confidence 445677888888888775 57788888865 68778999999766554
No 190
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=21.73 E-value=63 Score=19.17 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=10.9
Q ss_pred hCCCCcHHHHHHHhCCC
Q 022543 112 VSQGKDLSDLAVEHSIC 128 (295)
Q Consensus 112 i~~g~~F~~~a~~~S~d 128 (295)
++.|+++..+|++|...
T Consensus 3 V~~gDtl~~IA~~~~~~ 19 (44)
T PF01476_consen 3 VQPGDTLWSIAKRYGIS 19 (44)
T ss_dssp E-TT--HHHHHHHTTS-
T ss_pred ECcCCcHHHHHhhhhhh
Confidence 57899999999999554
No 191
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.24 E-value=1.3e+02 Score=27.26 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=27.1
Q ss_pred CCCcEEEE---eCCChhHHHHHHHHHHcCCCCeEEe
Q 022543 245 PQKDTYVM---CHHGMRSLQVAQWLQTQGFRRVFNV 277 (295)
Q Consensus 245 ~~~~iv~~---C~~g~rs~~a~~~L~~~G~~~v~~l 277 (295)
+++.++++ |.+|..-..+++.|++.|-..|+.+
T Consensus 217 ~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 252 (323)
T PRK02458 217 AGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAV 252 (323)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 57788887 5688888999999999998887743
No 192
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=21.11 E-value=1.1e+02 Score=30.14 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=30.5
Q ss_pred CCcEEEEeCCChhHHHHHHHHHHcCCCCeEEecchHH
Q 022543 246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH 282 (295)
Q Consensus 246 ~~~iv~~C~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 282 (295)
+.+.|+||++-..+..++..|...|+. +..+.||+.
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~-~~~~H~~l~ 259 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGIS-ALAYHAGLS 259 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence 578899999988889999999999984 778888764
No 193
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=20.83 E-value=1.2e+02 Score=21.42 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=12.2
Q ss_pred CCCcEEEEeCCCh-hHH
Q 022543 245 PQKDTYVMCHHGM-RSL 260 (295)
Q Consensus 245 ~~~~iv~~C~~g~-rs~ 260 (295)
.+.||+++|..|. |+.
T Consensus 38 ~~~pvlVHC~~G~gRtg 54 (105)
T smart00012 38 SSGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCCEEEEeCCCCChhh
Confidence 3679999999764 664
No 194
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=20.83 E-value=1.2e+02 Score=21.42 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=12.2
Q ss_pred CCCcEEEEeCCCh-hHH
Q 022543 245 PQKDTYVMCHHGM-RSL 260 (295)
Q Consensus 245 ~~~~iv~~C~~g~-rs~ 260 (295)
.+.||+++|..|. |+.
T Consensus 38 ~~~pvlVHC~~G~gRtg 54 (105)
T smart00404 38 SSGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCCEEEEeCCCCChhh
Confidence 3679999999764 664
No 195
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=20.73 E-value=2e+02 Score=21.29 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=25.9
Q ss_pred CCCCcEEEEe---CCChhHHHHHHHHHHcCCCCeE
Q 022543 244 DPQKDTYVMC---HHGMRSLQVAQWLQTQGFRRVF 275 (295)
Q Consensus 244 ~~~~~iv~~C---~~g~rs~~a~~~L~~~G~~~v~ 275 (295)
.+++.|+++. .+|.....+...|++.|...|.
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~ 120 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVG 120 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEE
Confidence 4678888874 6899999999999999976554
No 196
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.58 E-value=1.5e+02 Score=22.10 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=29.0
Q ss_pred CCCcEEEEeC------CChhHHHHHHHHHHcC---CCCeEEecc-----hHHHcccccCCCCCC
Q 022543 245 PQKDTYVMCH------HGMRSLQVAQWLQTQG---FRRVFNVSG-----GIHAYATKVDPSIPT 294 (295)
Q Consensus 245 ~~~~iv~~C~------~g~rs~~a~~~L~~~G---~~~v~~l~G-----G~~~W~~~~~p~~p~ 294 (295)
++.+|+++-. .+.-|..+...|..+| |.-|-+|.. |+..+. .=|++|+
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s--~WPT~PQ 74 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYS--NWPTFPQ 74 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhc--CCCCCce
Confidence 4567777743 2445789999999999 444545543 332221 1278875
Done!