Query 022544
Match_columns 295
No_of_seqs 112 out of 501
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 07:14:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zl8_A LIN-7; heterodimer, alp 23.7 42 0.0014 22.3 1.9 12 77-88 41-52 (53)
2 1kbh_B CREB-binding protein, n 15.0 1.2E+02 0.0042 20.5 2.7 28 28-55 10-37 (59)
3 1zoq_C CREB-binding protein, i 13.7 75 0.0026 20.5 1.3 28 28-55 3-30 (47)
4 3ddl_A Xanthorhodopsin; carote 10.5 8.1E+02 0.028 21.3 8.9 34 33-66 34-67 (273)
5 1v54_M VIIIB, IX, cytochrome C 10.1 2.1E+02 0.0072 18.5 2.6 36 5-42 9-44 (46)
6 2yvc_D Neprilysin; protein-pep 9.6 73 0.0025 17.7 0.2 8 1-8 7-14 (26)
7 2y69_M Cytochrome C oxidase po 9.3 5E+02 0.017 18.2 4.6 36 5-42 33-68 (70)
8 3am6_A Rhodopsin-2, AR2; seven 8.8 8.2E+02 0.028 20.5 6.9 57 5-66 4-60 (229)
9 4htp_A DNA ligase 4; helical d 6.9 2.5E+02 0.0087 24.0 2.6 22 31-52 170-191 (240)
10 2l6x_A GPR, green-light absorb 6.6 1E+03 0.036 20.1 6.5 32 35-66 32-63 (243)
No 1
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=23.73 E-value=42 Score=22.33 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=10.5
Q ss_pred HHhHHHHHHHHH
Q 022544 77 FLDSVKECYEAL 88 (295)
Q Consensus 77 y~~~ird~YeA~ 88 (295)
|++.+||+||-.
T Consensus 41 F~~aVREVYEhv 52 (53)
T 1zl8_A 41 FFGAVREVYETV 52 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 899999999963
No 2
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=14.97 E-value=1.2e+02 Score=20.47 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHHH
Q 022544 28 MRLLQQHLFYWKNPKEQKAIIIIILMAP 55 (295)
Q Consensus 28 ~~~i~~Hl~~y~~P~~Qr~iiRIl~mvP 55 (295)
+..+.+-+++=+.|+.|-+++.||=-=|
T Consensus 10 LqqLl~tlksp~speqqqqvl~ILksNP 37 (59)
T 1kbh_B 10 LQDLLRTLKSPSSPQQQQQVLNILKSNP 37 (59)
T ss_dssp HHHHHHHHHSCTTTTCSTHHHHHHTTSH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCH
Confidence 4567788999999999999999975433
No 3
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=13.67 E-value=75 Score=20.52 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=21.3
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHHH
Q 022544 28 MRLLQQHLFYWKNPKEQKAIIIIILMAP 55 (295)
Q Consensus 28 ~~~i~~Hl~~y~~P~~Qr~iiRIl~mvP 55 (295)
+..+.+-+++=+.|+.|-++++||=-=|
T Consensus 3 LqqLl~tlksp~sp~qqqqvl~ILksnP 30 (47)
T 1zoq_C 3 LQDLLRTLKSPSSPQQQQQVLNILKSNP 30 (47)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHcCH
Confidence 3456677788888999999999985444
No 4
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=10.48 E-value=8.1e+02 Score=21.30 Aligned_cols=34 Identities=6% Similarity=-0.018 Sum_probs=26.9
Q ss_pred HHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q 022544 33 QHLFYWKNPKEQKAIIIIILMAPIYAVDSFVGLL 66 (295)
Q Consensus 33 ~Hl~~y~~P~~Qr~iiRIl~mvPiyai~S~lsl~ 66 (295)
.-+...+.|...|...-+..+++..|..++..+.
T Consensus 34 F~~~~~~v~~~~R~~~~v~~lit~IAai~Yf~Ma 67 (273)
T 3ddl_A 34 FVLARNNVAPKYRISMMVSALVVFIAGYHYFRIT 67 (273)
T ss_dssp HHHGGGGSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCcceehhhHHHHHHHHHHHHHHHHHH
Confidence 3345567888888888899999999888888775
No 5
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=10.07 E-value=2.1e+02 Score=18.46 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=19.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 022544 5 TMSRAQITLMGSGLCVMLTMHFTMRLLQQHLFYWKNPK 42 (295)
Q Consensus 5 ~~~~~~~~~~~ag~~~~l~~~is~~~i~~Hl~~y~~P~ 42 (295)
.+++.+-+. ..++|. +++++----++-|+.+|.+.+
T Consensus 9 ~~s~~E~ai-gl~v~f-~~~L~PagWVLshL~~YKk~e 44 (46)
T 1v54_M 9 PTSPKEQAI-GLSVTF-LSFLLPAGWVLYHLDNYKKSS 44 (46)
T ss_dssp CCCHHHHHH-HHHHHH-HHHHHHHHHHHHTHHHHHTC-
T ss_pred CCCHHHHHH-HHHHHH-HHHHhhHHHHHHHHHHhcccc
Confidence 355666654 333333 233333333579999998763
No 6
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=9.58 E-value=73 Score=17.74 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=3.9
Q ss_pred CCCCCCch
Q 022544 1 MDLSTMSR 8 (295)
Q Consensus 1 ~~~~~~~~ 8 (295)
|||+++++
T Consensus 7 mditdina 14 (26)
T 2yvc_D 7 MDITDINA 14 (26)
T ss_pred cccccccC
Confidence 45555443
No 7
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.28 E-value=5e+02 Score=18.19 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=20.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 022544 5 TMSRAQITLMGSGLCVMLTMHFTMRLLQQHLFYWKNPK 42 (295)
Q Consensus 5 ~~~~~~~~~~~ag~~~~l~~~is~~~i~~Hl~~y~~P~ 42 (295)
.+++.+-+. ..++|. +++++----+.-|+.+|.+.+
T Consensus 33 ~~s~~E~ai-gltv~f-~~~L~PagWVLshLe~YKk~e 68 (70)
T 2y69_M 33 PTSPKEQAI-GLSVTF-LSFLLPAGWVLYHLDNYKKSS 68 (70)
T ss_dssp CCCHHHHHH-HHHHHH-HHHHHHHHHHHHTHHHHSCC-
T ss_pred CcCHHHHHH-HHHHHH-HHHHhhHHHHHHHHHHhcccc
Confidence 355666654 333333 333333333579999998873
No 8
>3am6_A Rhodopsin-2, AR2; seven trans-membrane, transport protein; HET: RET CLR; 3.20A {Acetabularia acetabulum}
Probab=8.79 E-value=8.2e+02 Score=20.51 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=33.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q 022544 5 TMSRAQITLMGSGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAIIIIILMAPIYAVDSFVGLL 66 (295)
Q Consensus 5 ~~~~~~~~~~~ag~~~~l~~~is~~~i~~Hl~~y~~P~~Qr~iiRIl~mvPiyai~S~lsl~ 66 (295)
+.+.+...|+-.+.+..++..+. .-+...+.|...|...-+..+++..|-.++..+.
T Consensus 4 ~~~~~gs~~lw~~~a~m~~~tv~-----f~~~~~~~~~~~r~~~~~~~lvt~iaa~~Y~~Ma 60 (229)
T 3am6_A 4 VETETGMIAQWIVFAIMAAAAIA-----FGVAVHFRPSELKSAYYINIAICTIAATAYYAMA 60 (229)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH-----HHHHGGGCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHHHHHHHH-----HHHHHhccCCcceehhHHHHHHHHHHHHHHHHHH
Confidence 35556555553333332222211 2223447788888888888899988888887776
No 9
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=6.86 E-value=2.5e+02 Score=24.03 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=16.4
Q ss_pred HHHHHhhcCCcchhhHHHHHHH
Q 022544 31 LQQHLFYWKNPKEQKAIIIIIL 52 (295)
Q Consensus 31 i~~Hl~~y~~P~~Qr~iiRIl~ 52 (295)
+...+..=..|.+||+++||+.
T Consensus 170 ~l~~Ll~~~t~~E~k~liRiil 191 (240)
T 4htp_A 170 SLLQLITQSSALEQKWLIRMII 191 (240)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHh
Confidence 3445555578999999999974
No 10
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=6.56 E-value=1e+03 Score=20.08 Aligned_cols=32 Identities=6% Similarity=-0.110 Sum_probs=25.7
Q ss_pred HhhcCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q 022544 35 LFYWKNPKEQKAIIIIILMAPIYAVDSFVGLL 66 (295)
Q Consensus 35 l~~y~~P~~Qr~iiRIl~mvPiyai~S~lsl~ 66 (295)
+...+.|...|....+..+++..|-.+++.+.
T Consensus 32 ~~~~~~~~~~R~~~~~~~lit~iaa~~Yf~Ma 63 (243)
T 2l6x_A 32 VERDRVSAKWKTSLTVSGLVTGIAFWHYMYMR 63 (243)
T ss_dssp HGGGSSCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcccCCcceehhhHHHHHHHHHHHHHHHHH
Confidence 34567788888888888999988888887775
Done!