Query 022544
Match_columns 295
No_of_seqs 112 out of 501
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 07:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022544.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022544hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zl8a1 a.194.1.1 (A:4-53) Lin 31.8 9.9 0.00072 23.5 1.6 12 77-88 38-49 (50)
2 d1y74a1 a.194.1.1 (A:17-73) Li 26.7 13 0.00098 23.5 1.6 12 77-88 39-50 (57)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 16.8 74 0.0054 16.5 3.2 17 186-202 9-25 (26)
4 d1zoqc1 a.153.1.1 (C:2065-2111 13.0 38 0.0028 20.1 1.3 27 29-55 4-30 (47)
5 d1v54m_ f.23.7.1 (M:) Mitochon 10.4 1.7E+02 0.012 17.1 3.8 34 5-40 9-42 (43)
6 d1eysh2 f.23.10.1 (H:7-43) Pho 7.8 91 0.0066 17.7 1.6 18 88-105 11-28 (37)
7 d2fug21 c.47.1.21 (2:3-180) NA 7.1 1.9E+02 0.014 21.8 3.9 39 29-67 29-69 (178)
8 d2otaa1 a.284.1.1 (A:7-68) Hyp 5.3 2.9E+02 0.021 17.3 3.3 21 27-48 30-50 (62)
9 d2juza1 a.284.1.1 (A:1-72) Unc 4.9 2.7E+02 0.02 18.0 3.0 23 26-48 35-57 (72)
10 d2jpqa1 a.284.1.1 (A:1-75) Hyp 4.2 2.9E+02 0.021 17.9 2.8 23 26-48 35-57 (75)
No 1
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=31.82 E-value=9.9 Score=23.50 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=10.5
Q ss_pred HHhHHHHHHHHH
Q 022544 77 FLDSVKECYEAL 88 (295)
Q Consensus 77 y~~~ird~YeA~ 88 (295)
|++.+||+||-.
T Consensus 38 F~~avREVYe~v 49 (50)
T d1zl8a1 38 FFGAVREVYETV 49 (50)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 899999999953
No 2
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.73 E-value=13 Score=23.48 Aligned_cols=12 Identities=42% Similarity=0.880 Sum_probs=10.6
Q ss_pred HHhHHHHHHHHH
Q 022544 77 FLDSVKECYEAL 88 (295)
Q Consensus 77 y~~~ird~YeA~ 88 (295)
|++.+||+||-.
T Consensus 39 F~~avREVYehv 50 (57)
T d1y74a1 39 FCSAIREVYEQL 50 (57)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999964
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=16.78 E-value=74 Score=16.48 Aligned_cols=17 Identities=6% Similarity=0.128 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 022544 186 VSLALYSLVVFYHVFAK 202 (295)
Q Consensus 186 ~~~Aly~L~~Fy~~~k~ 202 (295)
.++++++++++|.++.+
T Consensus 9 ~fw~ffalli~ylqten 25 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQTEN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccc
Confidence 46788899999987754
No 4
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.02 E-value=38 Score=20.12 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCCcchhhHHHHHHHHHH
Q 022544 29 RLLQQHLFYWKNPKEQKAIIIIILMAP 55 (295)
Q Consensus 29 ~~i~~Hl~~y~~P~~Qr~iiRIl~mvP 55 (295)
....+-+++=+.|++|.++.-|+=-=|
T Consensus 4 q~Ll~tLrsP~sP~QQqQvL~ILksNP 30 (47)
T d1zoqc1 4 QDLLRTLKSPSSPQQQQQVLNILKSNP 30 (47)
T ss_dssp HHHHHTCCSCCCHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHcCH
Confidence 455677888888999999998875544
No 5
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.38 E-value=1.7e+02 Score=17.13 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=19.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022544 5 TMSRAQITLMGSGLCVMLTMHFTMRLLQQHLFYWKN 40 (295)
Q Consensus 5 ~~~~~~~~~~~ag~~~~l~~~is~~~i~~Hl~~y~~ 40 (295)
.++..+.+..+..+|+ +++.----|..|+.+|.+
T Consensus 9 ~ls~~E~aigLt~~f~--~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 9 PTSPKEQAIGLSVTFL--SFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp CCCHHHHHHHHHHHHH--HHHHHHHHHHHTHHHHHT
T ss_pred CCCHHHHHHHHHHHHH--HHHccHHHHHHHHHHhcc
Confidence 4556666544443333 343333445799999865
No 6
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=7.75 E-value=91 Score=17.71 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 022544 88 LVIAKFMALMYSYLKISI 105 (295)
Q Consensus 88 ~vly~F~~Ll~~ylGg~~ 105 (295)
++.+.||..++-|+-.++
T Consensus 11 y~Fw~FFagLi~YL~rE~ 28 (37)
T d1eysh2 11 WAFWLFFFGLIIYLRRED 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 456778889999986653
No 7
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
Probab=7.06 E-value=1.9e+02 Score=21.83 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=32.6
Q ss_pred HHHHHHHhhcCCcchhhHHHHHHHHHH--HHHHHHHHHhhc
Q 022544 29 RLLQQHLFYWKNPKEQKAIIIIILMAP--IYAVDSFVGLLD 67 (295)
Q Consensus 29 ~~i~~Hl~~y~~P~~Qr~iiRIl~mvP--iyai~S~lsl~~ 67 (295)
-+..|+-..|-.++.++.|-+.+-+.| ||++.||-+.+.
T Consensus 29 L~~iQ~~~Gyip~~al~~iA~~l~v~~a~V~~vatFY~~f~ 69 (178)
T d2fug21 29 LRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQ 69 (178)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHHHSSSSC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHCCCHHHHHHHHHhcchhc
Confidence 344567778888889999999999998 999999998875
No 8
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=5.25 E-value=2.9e+02 Score=17.25 Aligned_cols=21 Identities=5% Similarity=0.213 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhcCCcchhhHHH
Q 022544 27 TMRLLQQHLFYWKNPKEQKAII 48 (295)
Q Consensus 27 s~~~i~~Hl~~y~~P~~Qr~ii 48 (295)
-+-++..|+.+ ..|..||..+
T Consensus 30 vLGN~vTnii~-~V~~~qR~~i 50 (62)
T d2otaa1 30 CLGNAVTNIIA-QVPESKRVAV 50 (62)
T ss_dssp HHHHHHHHHHT-TSCGGGHHHH
T ss_pred HHHHHHHHHHH-hCCHHHHHHH
Confidence 34566678876 7999999876
No 9
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=4.95 E-value=2.7e+02 Score=17.95 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhcCCcchhhHHH
Q 022544 26 FTMRLLQQHLFYWKNPKEQKAII 48 (295)
Q Consensus 26 is~~~i~~Hl~~y~~P~~Qr~ii 48 (295)
+-+-++..|+.|-+-|..||..+
T Consensus 35 MvLGN~vTniln~~V~~~qR~~i 57 (72)
T d2juza1 35 IALGNMASNLLTTSVPQTQCEAL 57 (72)
T ss_dssp HHHHHHHHHHHTTSSCSTTHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHH
Confidence 45667888999999999999876
No 10
>d2jpqa1 a.284.1.1 (A:1-75) Hypothetical protein VP2129 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=4.24 E-value=2.9e+02 Score=17.95 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhcCCcchhhHHH
Q 022544 26 FTMRLLQQHLFYWKNPKEQKAII 48 (295)
Q Consensus 26 is~~~i~~Hl~~y~~P~~Qr~ii 48 (295)
+-+-++..|+.|-+-|..||..+
T Consensus 35 MvLGN~vTniln~~V~~~qR~~i 57 (75)
T d2jpqa1 35 MIAGNIATNVLNQRVAASQRKLI 57 (75)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHH
Confidence 44567788999999999999876
Done!