Query 022545
Match_columns 295
No_of_seqs 184 out of 1202
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:15:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u42_A 50S ribosomal protein L 100.0 3E-72 1E-76 509.8 22.9 227 59-285 2-229 (229)
2 3bbo_D Ribosomal protein L1; l 100.0 4.8E-72 1.7E-76 531.1 16.2 256 39-294 96-351 (352)
3 3qoy_A 50S ribosomal protein L 100.0 4.4E-70 1.5E-74 498.9 23.2 228 60-287 3-234 (242)
4 2wwq_5 50S ribosomal protein L 100.0 9.5E-70 3.3E-74 494.8 24.7 228 60-287 3-230 (234)
5 3j21_A 50S ribosomal protein L 100.0 4E-60 1.4E-64 427.0 16.9 199 79-282 7-215 (216)
6 2zkr_5 60S ribosomal protein L 100.0 2.8E-59 9.5E-64 420.4 17.4 198 79-282 5-212 (212)
7 1i2a_A 50S ribosomal protein L 100.0 1.3E-58 4.3E-63 418.0 18.9 199 80-285 6-215 (219)
8 1mzp_A 50S ribosomal protein L 100.0 6E-57 2E-61 406.6 20.0 195 80-282 8-216 (217)
9 2ftc_A Mitochondrial ribosomal 100.0 6.9E-54 2.4E-58 379.3 21.5 184 98-287 2-189 (189)
10 3iz5_A 60S ribosomal protein L 100.0 1.6E-56 5.5E-61 403.4 -3.1 199 78-282 7-216 (216)
11 3o58_A L10A, 60S ribosomal pro 100.0 2.8E-56 9.6E-61 402.1 -11.8 199 78-282 7-217 (217)
12 2ov7_A 50S ribosomal protein L 100.0 3.2E-39 1.1E-43 271.8 17.8 135 60-284 2-136 (137)
13 3iz5_A 60S ribosomal protein L 58.8 7.1 0.00024 34.2 3.6 23 181-204 116-138 (216)
14 1nsj_A PRAI, phosphoribosyl an 42.7 6.9 0.00024 34.0 0.8 26 129-154 3-28 (205)
15 1v5x_A PRA isomerase, phosphor 42.3 7 0.00024 33.9 0.8 25 130-154 3-27 (203)
16 4h62_K Mediator of RNA polymer 41.1 16 0.00054 23.3 2.1 22 31-52 17-38 (40)
17 3nbm_A PTS system, lactose-spe 34.3 24 0.00082 27.5 2.7 62 127-192 4-78 (108)
18 4aaj_A N-(5'-phosphoribosyl)an 34.1 12 0.0004 33.1 0.9 31 123-154 16-46 (228)
19 3o58_A L10A, 60S ribosomal pro 32.5 5.5 0.00019 35.0 -1.5 20 183-203 119-138 (217)
20 2aze_B Transcription factor E2 27.6 31 0.001 27.0 2.2 17 267-284 87-103 (106)
21 1pii_A N-(5'phosphoribosyl)ant 23.6 22 0.00074 34.7 0.8 26 129-154 256-281 (452)
No 1
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=3e-72 Score=509.79 Aligned_cols=227 Identities=48% Similarity=0.841 Sum_probs=216.2
Q ss_pred cccchhHHHHHhhccCCCCCCHHHHHHHHHhhccCCCCCcEEEEEEeCcCCCCCCccceeeeecCCCCCCceEEEEEcCc
Q 022545 59 ETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQG 138 (295)
Q Consensus 59 ~~~~k~~~~~~~~~~~~~~y~l~eAI~~lk~~~~~~F~EsVel~i~L~id~kk~~~~irg~V~LPh~~gk~~kV~Vfa~~ 138 (295)
.|++|||+++.+.++..+.|++.|||+++|+.+.++|+||||++++|++|++++++++||+|.|||++|++.+|||||++
T Consensus 2 ~k~~k~~~~~~~~~d~~k~y~~~eAi~~lk~~~~~kF~etvel~i~L~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~ 81 (229)
T 3u42_A 2 PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKG 81 (229)
T ss_dssp -------CCGGGSSCTTCCBCHHHHHHHHHHHCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCT
T ss_pred CcccHHHHHHHhccCccCCCCHHHHHHHHHHhCCCCCCccEEEEEEEccCCCCCCCceeEEEECCCCCCCceEEEEecCh
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHcCCCccccHHHHHHHHcCcccccEEEeCccchHHhH-hhchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCe
Q 022545 139 EKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGK 217 (295)
Q Consensus 139 ~~~eeAk~aGAd~VG~~eLi~kIk~g~~~fD~~lAt~d~m~~l~-~LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~ 217 (295)
+++++|++||||+||++||+++|++|+.+||+|||||||||.|+ .|||+||||||||||+.|||++|+.++|+++++|+
T Consensus 82 ~~~~eAk~aGAd~vG~~dLi~kIk~g~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~ 161 (229)
T 3u42_A 82 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGR 161 (229)
T ss_dssp HHHHHHHHTTCSEEECTHHHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTE
T ss_pred HhHHHHHhcCCceeCcHHHHHHHhcCCccccEEEEchHHHHHHHHhhccccccccccccCCCCCCCCCHHHHHHHHhCce
Confidence 99999999999999999999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred EEEEEcCCCeeeEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEeeccc
Q 022545 218 VEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 285 (295)
Q Consensus 218 v~~r~dk~g~i~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~~~~ 285 (295)
++||.|+.|++|++||+++|++|||.||+.+++++|.+.+|.+++|.||+++|||||||||++||.++
T Consensus 162 v~~r~dk~g~i~~~IGk~~f~~e~L~eNi~a~i~~i~~~kp~~~kg~~ik~v~lssTmGp~i~id~~s 229 (229)
T 3u42_A 162 IEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHS 229 (229)
T ss_dssp EEEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEECSSSCCEEBCTTC
T ss_pred EEEEeCCCCeecccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCCeEEEEEEECCCCcCeEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998763
No 2
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.8e-72 Score=531.11 Aligned_cols=256 Identities=77% Similarity=1.123 Sum_probs=224.4
Q ss_pred HHHHHhhhcchhhhhhcccccccchhHHHHHhhccCCCCCCHHHHHHHHHhhccCCCCCcEEEEEEeCcCCCCCCcccee
Q 022545 39 LLLLLFQLSLRKARLRCLSRETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRA 118 (295)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~y~l~eAI~~lk~~~~~~F~EsVel~i~L~id~kk~~~~irg 118 (295)
..+-..+|+.+|++++.|+.++++|||+++.++++..+.|++.|||+++++.+.++|+||||++++|++||++++|++||
T Consensus 96 ~~~~~~~~~~~~~~~~~k~m~k~~K~~~~~~~~~d~~~~Y~l~EAi~llK~~~~~KFdETVEl~I~L~vDpkk~dq~vRG 175 (352)
T 3bbo_D 96 TLPSPTKPKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRA 175 (352)
T ss_dssp --------------------CCCCCSSTTTTTSCCSSSCCCTTTTHHHHSTTCCSSSCCEECCEEEECSCTTSSTTCCEE
T ss_pred cccCCCCccccccccchhhhhhhhHHHHHHHhcccccCCCCHHHHHHHHHhccccCCCceEEEEEEeCCCCcccccccce
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCceEEEEEcCcccHHHHHHcCCCccccHHHHHHHHcCcccccEEEeCccchHHhHhhchhccCCCCCCCCC
Q 022545 119 TVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPK 198 (295)
Q Consensus 119 ~V~LPh~~gk~~kV~Vfa~~~~~eeAk~aGAd~VG~~eLi~kIk~g~~~fD~~lAt~d~m~~l~~LgriLGPrGlMP~pk 198 (295)
+|.|||++|++.+|||||+|+++++|+++||++||++||+++|++|+.+||+||||||||++|++|||+||||||||+|+
T Consensus 176 tV~LPhgtgk~~kVcVfa~ge~~eeAk~AGAdvVG~edLikkIKkg~~dFD~fIAtpdmM~~lgrLGkiLGPRGlMPnPk 255 (352)
T 3bbo_D 176 TVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPK 255 (352)
T ss_dssp EECCTTTSSSSSCEEEECCTTTTHHHHTTTCSEEECTTTHHHHTTTCCCCSEEEECSSSHHHHGGGGGTTTTTTCSCCTT
T ss_pred eecCCCCCCCccEEEEEeCchhHHHHHHcCCCccCHHHHHHHHHhchhhcCEEEECHHHHHHHHhhcccccccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHhcCeEEEEEcCCCeeeEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCc
Q 022545 199 AGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPS 278 (295)
Q Consensus 199 ~GTvt~di~~~I~~~k~G~v~~r~dk~g~i~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~ 278 (295)
.|||++|+.++|+++++|+++||+|+.|++|++||+++|++|||.|||.+++++|.+.+|++|+|.||+++||||||||+
T Consensus 256 ~GTVt~Dva~aV~e~K~G~v~fR~dK~g~ihv~VGk~sfs~EqL~ENI~Avi~~L~k~kP~~~KG~yIksv~LkSTMGPg 335 (352)
T 3bbo_D 256 AGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPS 335 (352)
T ss_dssp TTCBSSCHHHHHTTTTTCCEEEECCSSCEECCCCEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEECCBSSSCC
T ss_pred CCcccccHHHHHHHHHcCeeEEEeCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCC
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccccCCCC
Q 022545 279 IRLNIKEMLDYKLPSN 294 (295)
Q Consensus 279 i~I~~~~~~~~~~~~~ 294 (295)
++||.+++.+++.||+
T Consensus 336 i~I~~~~l~d~~~p~~ 351 (352)
T 3bbo_D 336 IRLNIREMLDYKPPSN 351 (352)
T ss_dssp CEECTTC---------
T ss_pred EEEEhhhcccccCCCC
Confidence 9999999999999986
No 3
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=4.4e-70 Score=498.89 Aligned_cols=228 Identities=50% Similarity=0.860 Sum_probs=222.0
Q ss_pred ccchhHHHHHhhccCCCCCCHHHHHHHHHhhccC---CCCCcEEEEEEeCcCCCCCCccceeeeecCCCCCCceEEEEEc
Q 022545 60 TGSKRFLEIQNLREGKKEYDLKTAISLLKQMSST---KFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLA 136 (295)
Q Consensus 60 ~~~k~~~~~~~~~~~~~~y~l~eAI~~lk~~~~~---~F~EsVel~i~L~id~kk~~~~irg~V~LPh~~gk~~kV~Vfa 136 (295)
+++|||+++.+.++..+.|++.|||+++++.+.. +|+||||++|+|++||+++++++||+|.|||++|++.+|||||
T Consensus 3 ~~~k~~~~~~~~~~~~~~y~l~eAi~~~k~~~~~~~rkF~etVel~i~L~vDp~k~d~~vrg~V~LPh~~gk~~kV~Vfa 82 (242)
T 3qoy_A 3 RRGKKYIEASKLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFA 82 (242)
T ss_dssp THHHHHHHHHHTSCTTCCBCHHHHHHHHHHHHHHHCCSSCCEEEEEEEESCCTTSGGGCCEEEEECSCCCSSCCCEEEEC
T ss_pred cccHHHHHHHHhccccCccCHHHHHHHHHhhcccccCCCCCcEEEEEEeccCCCCCCCccceEecCCCCCCCCcEEEEEc
Confidence 5799999999999999999999999999998865 9999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHcCCCccccHHHHHHH-HcCcccccEEEeCccchHHhHhhchhccCCCCCCCCCCCCCCCCHHHHHHHHhc
Q 022545 137 QGEKFNEAKNAGADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKK 215 (295)
Q Consensus 137 ~~~~~eeAk~aGAd~VG~~eLi~kI-k~g~~~fD~~lAt~d~m~~l~~LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~ 215 (295)
+++++++|++|||++||++||+++| ++|+.+||+||||||+||+|++|||+||||||||+|++|||++|+.++|+++++
T Consensus 83 ~~~~~~eAk~aGad~vg~~dLi~ki~k~g~~~fD~~iAtpd~m~~l~~LGriLGPrGlmP~pk~gTvt~dv~~~V~~~k~ 162 (242)
T 3qoy_A 83 EGEYAKKAEEAGADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKR 162 (242)
T ss_dssp CHHHHHHHHHTTCSEEESHHHHHHHHHHTCCCCSEEEECTTTHHHHGGGHHHHGGGTCSCCGGGTCBCSCHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCEECcHHHHHHHHhCCCccCCEEEECHHHHHHHHHHhHHhccccCCCcccCCccchhHHHHHHHHhc
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCeeeEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEeeccccc
Q 022545 216 GKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 287 (295)
Q Consensus 216 G~v~~r~dk~g~i~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~~~~~~ 287 (295)
|+++||+++.||+|++||+++|++|||.||+.+++++|.+.+|.+.++.||+++|||||||||++|+.++++
T Consensus 163 G~v~fr~~k~~~i~v~VG~~~m~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lkSTmGp~i~i~~~~~~ 234 (242)
T 3qoy_A 163 GRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINEVL 234 (242)
T ss_dssp TEEEEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEEETTSCCEEBCHHHHH
T ss_pred CcEEEEecCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCcccCCceEEEEEEECCCCCCEEEEhhHhC
Confidence 999999999999999999999999999999999999999999998888899999999999999999998875
No 4
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=9.5e-70 Score=494.84 Aligned_cols=228 Identities=46% Similarity=0.746 Sum_probs=223.0
Q ss_pred ccchhHHHHHhhccCCCCCCHHHHHHHHHhhccCCCCCcEEEEEEeCcCCCCCCccceeeeecCCCCCCceEEEEEcCcc
Q 022545 60 TGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGE 139 (295)
Q Consensus 60 ~~~k~~~~~~~~~~~~~~y~l~eAI~~lk~~~~~~F~EsVel~i~L~id~kk~~~~irg~V~LPh~~gk~~kV~Vfa~~~ 139 (295)
+++|||+++.+.++..+.|++.|||+++++.+.++|+||||++++|++||+++++++||+|.|||+++++.+|||||+|+
T Consensus 3 ~~~k~~~~~~~~~~~~~~y~~~eAv~~lk~~~~~kF~etvel~i~L~vdp~k~dq~vrg~V~LPh~~~k~~rV~Vfa~~~ 82 (234)
T 2wwq_5 3 KLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGA 82 (234)
T ss_dssp CCCHHHHHHHTTSCCSSEECHHHHHHHHHHTCCCSSCCEEEEEEEECSCCCSSTTSCCEEEECSSCCSSCCCEEEECSSS
T ss_pred cccHHHHHHHhhccccCccCHHHHHHHHHHhccCCCCceEEEEEEECCCCcccCcccceEEeCCCCCCCCcEEEEEcCch
Confidence 57999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred cHHHHHHcCCCccccHHHHHHHHcCcccccEEEeCccchHHhHhhchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCeEE
Q 022545 140 KFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVE 219 (295)
Q Consensus 140 ~~eeAk~aGAd~VG~~eLi~kIk~g~~~fD~~lAt~d~m~~l~~LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~v~ 219 (295)
++++|++|||++||++||+++|++|+.+||+|||||||||+|++|||+||||||||+|+.|||++|+.++|+++++|+++
T Consensus 83 ~~~~Ak~aGad~vg~edLi~kik~~~~~fD~~iAtp~~m~~l~~LGkiLgprGlmP~pk~gTvt~dv~~~V~~~k~g~v~ 162 (234)
T 2wwq_5 83 NAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVR 162 (234)
T ss_dssp CHHHHHHHTCSEECSHHHHHHHHHTCCCSSEEEECHHHHHHTTSSCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHHHEEE
T ss_pred hHHHHHHcCCCEEcHHHHHHHHHcCcccCCEEEECHHHHHHHHHHhhhhccCCCCCCccCCCccccHHHHHHHHHcCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEcCCCeeeEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEeeccccc
Q 022545 220 YRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 287 (295)
Q Consensus 220 ~r~dk~g~i~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~~~~~~ 287 (295)
||+++.|++|++||+++|++|||.||+.+++++|.+.+|.+|+|.||+++|||||||||++|+.+++.
T Consensus 163 ~r~~k~~~i~v~VG~~~f~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lksTmgp~i~id~~~~~ 230 (234)
T 2wwq_5 163 YRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLS 230 (234)
T ss_dssp ECCSSSCEEEEEEEETTSCHHHHHHHHHHHHHHHHHSCCSSCCSCCEEEEEEEESSSCEEEESSSCCC
T ss_pred EEecCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCcccccCCeEEEEEEECCCCCCEEEehHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988764
No 5
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4e-60 Score=426.97 Aligned_cols=199 Identities=31% Similarity=0.536 Sum_probs=189.9
Q ss_pred CHHHHHHHHHhhc-cCCCCCcEEEEEEeC-cCCCCCCccceeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCccccHH
Q 022545 79 DLKTAISLLKQMS-STKFTETAEAHFRLN-IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDD 156 (295)
Q Consensus 79 ~l~eAI~~lk~~~-~~~F~EsVel~i~L~-id~kk~~~~irg~V~LPh~~gk~~kV~Vfa~~~~~eeAk~aGAd~VG~~e 156 (295)
.+.|||+.+++.+ .++|+||||++++|+ +||++++|++||+|.|||++|++.+|||||+++++++|++|||+++|++|
T Consensus 7 ~~~eav~~~~~~~~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~Ak~aGad~vg~e~ 86 (216)
T 3j21_A 7 KIVKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAE 86 (216)
T ss_dssp SCCCCTTTTCCCCCCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCCSSCCCEEECCCSHHHHHHHHHTCCCCCTTH
T ss_pred HHHHHHHHHHHhCcccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCCCCCcEEEEECCHHHHHHHHhcCCCccCHHH
Confidence 5679999999988 699999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-------cCcccccEEEeCccchHHhHh-hchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCeEEEEEcCCCee
Q 022545 157 LIEQIK-------GGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIV 228 (295)
Q Consensus 157 Li~kIk-------~g~~~fD~~lAt~d~m~~l~~-LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~v~~r~dk~g~i 228 (295)
| +++. +++.+||+|||||++|+.|++ |||+|||||+||+|++||+ +|+.++|+++++ +++||+++.||+
T Consensus 87 L-~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~gtv-~dv~~~v~~~k~-~v~~r~~k~~~i 163 (216)
T 3j21_A 87 L-EEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTL-TDLTPIVEKLKK-TVRIQLKNNPVV 163 (216)
T ss_dssp H-HHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTTTCB-CSHHHHHHHHTC-EEEEEEETTTEE
T ss_pred H-HHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcCCcH-HHHHHHHHHHHh-hceeecCCCCEE
Confidence 8 6664 467899999999999999997 9999999999999999999 999999999986 899999999999
Q ss_pred eEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEee
Q 022545 229 HIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 282 (295)
Q Consensus 229 ~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~ 282 (295)
|++||+++|++|||.||+.+++++|.+.+|.+|+ ||+++|||||||||++||
T Consensus 164 ~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~k--~Iksi~lksTmgp~i~i~ 215 (216)
T 3j21_A 164 HAPVGTEKMSDEEIAENIEAVLNAIIGKLERGES--QVKSVYVKTTMGPAVKIE 215 (216)
T ss_dssp ECCCEESSSCHHHHHHHHHHHHHHHHHSCCCSSC--SEEEEEEEESSSCCEECC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHhcccccc--ceEEEEEECCCCCCEEcc
Confidence 9999999999999999999999999999999998 799999999999999997
No 6
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.8e-59 Score=420.43 Aligned_cols=198 Identities=28% Similarity=0.528 Sum_probs=189.9
Q ss_pred CHHHHHH-HHHhhccCCCCCcEEEEEEe-CcCCCCCCccceeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCccccHH
Q 022545 79 DLKTAIS-LLKQMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDD 156 (295)
Q Consensus 79 ~l~eAI~-~lk~~~~~~F~EsVel~i~L-~id~kk~~~~irg~V~LPh~~gk~~kV~Vfa~~~~~eeAk~aGAd~VG~~e 156 (295)
.+.|||+ ++++.+.++|+||||++++| ++||+++++++||+|.|||+++++.+|||||+|+++++|+++||++||++|
T Consensus 5 ~l~eAv~~llk~~~~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~~vg~~~ 84 (212)
T 2zkr_5 5 EIENAVSRALEDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVADDVLDEDE 84 (212)
T ss_dssp THHHHHHHHHHTSCCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTSCCCCHHH
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEeCCCCCCcccccCceEEECCCCCCCCcEEEEEcCchhHHHHHhcCCCEeCHHH
Confidence 4689999 88988899999999999999 999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHc------Cc-ccccEEEeCccchHHhHh-hchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCeEEEEEcCCCee
Q 022545 157 LIEQIKG------GF-MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIV 228 (295)
Q Consensus 157 Li~kIk~------g~-~~fD~~lAt~d~m~~l~~-LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~v~~r~dk~g~i 228 (295)
| ++|++ ++ .+||+|||||++||+|++ |||+|||||+||+|+.| ++|+.++|+++++| ++||+++.||+
T Consensus 85 L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk~g--t~dv~~~i~~~k~~-v~~r~~k~~~i 160 (212)
T 2zkr_5 85 L-EELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDP--DDDVVEVIERMKNT-VQLRSGERRTF 160 (212)
T ss_dssp H-HHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECCS--SSCCHHHHHHHHTE-EECCCSSSSEE
T ss_pred H-HHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCcccCC--CcCHHHHHHHHHcc-eEEEecCCCEE
Confidence 9 99987 76 899999999999999998 99999999999999999 69999999999987 99999999999
Q ss_pred eEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEee
Q 022545 229 HIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 282 (295)
Q Consensus 229 ~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~ 282 (295)
|++||+++|++|||.||+.+++++|.+.+|++|+ ||+++|||||||||++|+
T Consensus 161 ~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~--~ik~v~lksTmgp~i~i~ 212 (212)
T 2zkr_5 161 HTRVGAEDMSAENIADNIDVILRRLHADLEKGPL--NIDTVYVKTTMGPAMEVA 212 (212)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHTTTCCCTT--TEEEEEEEESSSCCEEC-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHhCccccc--cEEEEEEECCCCCCEECC
Confidence 9999999999999999999999999999999994 899999999999999974
No 7
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=1.3e-58 Score=418.01 Aligned_cols=199 Identities=27% Similarity=0.478 Sum_probs=187.6
Q ss_pred HHHHHH-HHHhhccCCCCCcEEEEEEe-CcCCCCCC-ccceeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCccccHH
Q 022545 80 LKTAIS-LLKQMSSTKFTETAEAHFRL-NIDPKYND-QQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDD 156 (295)
Q Consensus 80 l~eAI~-~lk~~~~~~F~EsVel~i~L-~id~kk~~-~~irg~V~LPh~~gk~~kV~Vfa~~~~~eeAk~aGAd~VG~~e 156 (295)
+.|||+ ++++.+.++|+||||++++| ++||+ ++ +++||+|.|||+++++.+|||||+|+++++|+++||++||++|
T Consensus 6 l~eAv~~llk~~~~~kf~etVel~i~LK~~dp~-~d~q~vrg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~~vg~~~ 84 (219)
T 1i2a_A 6 LLQAVKEARELAKPRNFTQSFEFIATLKEIDMR-KPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEE 84 (219)
T ss_dssp HHHHHHHHHHHSCCCSSCCEEEEEEEESSCCTT-SGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCEEECHHH
T ss_pred HHHHHHHHHHhcccCCCCceEEEEEEecccCCc-ccccccceEEecCCCCCCCcEEEEEcCchhHHHHHHCCCCEEcHHH
Confidence 589999 88888899999999999999 99999 78 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHc------Cc-ccccEEEeCccchHHhHh-hchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCeEEEEEcCCCee
Q 022545 157 LIEQIKG------GF-MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIV 228 (295)
Q Consensus 157 Li~kIk~------g~-~~fD~~lAt~d~m~~l~~-LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~v~~r~dk~g~i 228 (295)
| ++|++ ++ .+||+|||||||||.|++ |||+|||||+||+|+.| ++|+.++|+++++| ++||+++.||+
T Consensus 85 L-~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk~g--t~dv~~~v~~~k~~-v~~r~~k~~~i 160 (219)
T 1i2a_A 85 I-EELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPA--NANIKPLVERLKKT-VVINTRDKPYF 160 (219)
T ss_dssp H-HHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECT--TCCCHHHHHHHHTE-EEEECTTSSEE
T ss_pred H-HHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCcccCC--CccHHHHHHHHhcc-eEEEecCCCEE
Confidence 9 99976 45 799999999999999998 99999999999999999 69999999999987 99999999999
Q ss_pred eEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEeeccc
Q 022545 229 HIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 285 (295)
Q Consensus 229 ~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~~~~ 285 (295)
|++||+++|++|||.||+.+++++|.+.+|.+| .||+++|||||||||++||.+.
T Consensus 161 ~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~--~~ik~v~lksTmgp~i~iy~~~ 215 (219)
T 1i2a_A 161 QVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGL--YHIKDAYVKLTMGPAVKVKKEK 215 (219)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHSTTGG--GGEEEEEEEETTSCCEECC---
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHhCCccc--cceEEEEEECCCCCCEEeEhhh
Confidence 999999999999999999999999999999999 4899999999999999998764
No 8
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=6e-57 Score=406.57 Aligned_cols=195 Identities=27% Similarity=0.472 Sum_probs=185.1
Q ss_pred HHHHHHHHHhh---ccCCCCCcEEEEEEe-CcCCCCCC-ccceeeeecCCCCCCceEEEEEcCcccHHHHHHcCCC-ccc
Q 022545 80 LKTAISLLKQM---SSTKFTETAEAHFRL-NIDPKYND-QQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGAD-LVG 153 (295)
Q Consensus 80 l~eAI~~lk~~---~~~~F~EsVel~i~L-~id~kk~~-~~irg~V~LPh~~gk~~kV~Vfa~~~~~eeAk~aGAd-~VG 153 (295)
+.|||+.+++. +.++|+||||++++| ++||+ ++ +++||+|.|||+++++.+|||||+|+++++|+++||| ++|
T Consensus 8 l~~Av~~ll~~~~~~~~kf~etvel~i~LK~~dp~-~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGad~~vg 86 (217)
T 1mzp_A 8 LIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMK-KGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASPKVVIT 86 (217)
T ss_dssp HHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGG-GTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCCSEECC
T ss_pred HHHHHHHHHhhccccccCCCccEEEEEEecCCCCc-ccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcCCCeeeC
Confidence 57899998875 478999999999999 99999 78 8999999999999999999999999999999999998 999
Q ss_pred cHHHHHHHHc------Cc-ccccEEEeCccchHHhHh-hchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCeEEEEEcCC
Q 022545 154 GDDLIEQIKG------GF-MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKT 225 (295)
Q Consensus 154 ~~eLi~kIk~------g~-~~fD~~lAt~d~m~~l~~-LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~v~~r~dk~ 225 (295)
++|| ++|++ ++ .+||+|||||+|||.|++ |||+|||||+||+|++| ++|+.++|+++++| ++||+++.
T Consensus 87 ~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~~g--t~dv~~~v~~~k~~-v~~r~~k~ 162 (217)
T 1mzp_A 87 REEL-QKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPN--TADISEYINRFKRS-VLVKTKDQ 162 (217)
T ss_dssp HHHH-HHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCS--SSCCHHHHHHHHTE-EEEECSSS
T ss_pred HHHH-HHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcccCC--CccHHHHHHHHhcc-eEEEecCC
Confidence 9999 99987 55 899999999999999998 99999999999999999 69999999999987 99999999
Q ss_pred CeeeEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEee
Q 022545 226 GIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 282 (295)
Q Consensus 226 g~i~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~ 282 (295)
||+|++||+++|++|||.||+.+++++|.+.+|+ |+ ||+++|||||||||++|+
T Consensus 163 ~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~-~~--~ik~v~lksTmgp~i~i~ 216 (217)
T 1mzp_A 163 PQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKV-ET--NLRNIYVKTTMGKAVKVK 216 (217)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCC-TT--TEEEEEEEETTSCCEECC
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcc-ch--heEEEEEECCCCCCeeCC
Confidence 9999999999999999999999999999999999 94 899999999999999976
No 9
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=6.9e-54 Score=379.28 Aligned_cols=184 Identities=26% Similarity=0.428 Sum_probs=170.7
Q ss_pred cEEEEEEeCcCCCCCCccceeeeecCCCCCCce-EEEEEcCc-ccHHHHHHcCCCccccHHHHHHHHcCcccccEEEeCc
Q 022545 98 TAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV-KVAVLAQG-EKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASP 175 (295)
Q Consensus 98 sVel~i~L~id~kk~~~~irg~V~LPh~~gk~~-kV~Vfa~~-~~~eeAk~aGAd~VG~~eLi~kIk~g~~~fD~~lAt~ 175 (295)
.||+++.+.- .+ ...++||+|.||||++++. +|||||++ +++++|++|||++||++||+++|++++.+||+|||||
T Consensus 2 ~ieL~m~l~~-~r-~~~~~rg~V~LPhg~~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~~~~~~fD~~iAtp 79 (189)
T 2ftc_A 2 DLTLDMALGK-KK-NVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVP 79 (189)
T ss_pred eEEEEEEecC-Cc-cCcccceEEECCCCCCCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHHcCCccCCEEEECH
Confidence 3677777732 34 4556699999999988765 99999999 5789999999999999999999999999999999999
Q ss_pred cchHHhHhhchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCeEEEEEcCCC--eeeEeeeCCCCCHHHHHHHHHHHHHHH
Q 022545 176 DMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTG--IVHIPFGKADFSEDDLLINFLAAVKSI 253 (295)
Q Consensus 176 d~m~~l~~LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~v~~r~dk~g--~i~v~IGk~sm~~e~L~ENi~avl~~I 253 (295)
||||+|++||++|||| ||+|+.|||++|++++|+++++|. +||+++.| ++|++||+++|++|||.||+.+++++|
T Consensus 80 ~~m~~l~~l~~~Lg~K--mP~pk~gTvt~dv~~~v~~~k~g~-~~r~~k~~~~~i~v~VG~~~~~~e~L~eNi~a~i~~l 156 (189)
T 2ftc_A 80 EIMPELNRLRKKLNKK--YPKLSRNSIGRDIPKMLELFKNGH-EIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEV 156 (189)
T ss_pred HHHHHHHHhhccccCC--CCcccCCCccccHHHHHHHHhcce-EEEeccCCCcEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999977 999999999999999999999986 99999999 999999999999999999999999999
Q ss_pred HHhCCCCCCCceeeEEEEeCCCCCcEEeeccccc
Q 022545 254 EANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 287 (295)
Q Consensus 254 ~~~~p~~~kg~~Ik~i~IssTmGp~i~I~~~~~~ 287 (295)
.+++|++| |.||+++|||||||||++|+.++++
T Consensus 157 ~~~~p~~~-g~~ik~v~lssTmgp~i~i~~~~l~ 189 (189)
T 2ftc_A 157 CRHRPLNL-GPFVVRAFLRSSTSEGLLLKIDPLL 189 (189)
T ss_pred HHhCchhc-CccEEEEEEECCCCCCEEEehhhcC
Confidence 99999999 8899999999999999999998874
No 10
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=1.6e-56 Score=403.42 Aligned_cols=199 Identities=23% Similarity=0.359 Sum_probs=187.4
Q ss_pred CCHHHHHHHHHhhc---cCCCCCcEEEEEEe-CcCCCCCCccceeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCccc
Q 022545 78 YDLKTAISLLKQMS---STKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVG 153 (295)
Q Consensus 78 y~l~eAI~~lk~~~---~~~F~EsVel~i~L-~id~kk~~~~irg~V~LPh~~gk~~kV~Vfa~~~~~eeAk~aGAd~VG 153 (295)
..+.|||+.+++.+ .++|+||||++++| ++||+ +++++||+|.|||++|++.+|||||+++++++|+++||++||
T Consensus 7 ~~l~eav~~~~~~~~~~~~kF~etvel~i~Lk~idp~-kd~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~A~~aGa~~vg 85 (216)
T 3iz5_A 7 DAVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQ-KDKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQAEKMGLDYMD 85 (216)
T ss_dssp CSSCEECTTTSSSSTTHHHHCCCSSCCEEEEEEECCC-CSSSTTCCEECCBCSSCCCCCCCEEEECCTHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHhccccccCCCccEEEEEEecccCcc-cccccceeecCCCCCCCCcEEEEEcChHhHHHHHhccCCEeC
Confidence 56788999998877 78999999999999 89998 599999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHcCc------ccccEEEeCccchHHhHh-hchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCeEEEEEcCCC
Q 022545 154 GDDLIEQIKGGF------MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTG 226 (295)
Q Consensus 154 ~~eLi~kIk~g~------~~fD~~lAt~d~m~~l~~-LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~v~~r~dk~g 226 (295)
++||++++++++ .+||+|||||++|++|++ ||+.|||+|+||+|+++ ++|+.++|+++++ +++||+++.|
T Consensus 86 ~~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~~~--t~dv~~~v~~~k~-~v~~r~~k~~ 162 (216)
T 3iz5_A 86 VESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSH--QESLEAKVNETKA-TVKFQLKKVL 162 (216)
T ss_dssp EECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBCSC--HHHHHHHHHHTBC-CEEECTTSEE
T ss_pred HHHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCcCC--cccHHHHHHHHHh-hhheeCCCcc
Confidence 999999997754 699999999999999996 69999999999999974 6999999999986 8999999999
Q ss_pred eeeEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEee
Q 022545 227 IVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 282 (295)
Q Consensus 227 ~i~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~ 282 (295)
|+|++||+++|++|||.||+.++++++.+.+|++|+ ||+++|||||||||++||
T Consensus 163 ~i~v~IG~~~~~~e~L~eNi~avi~~l~~~~p~~~~--~Iksv~iksTmgp~i~iy 216 (216)
T 3iz5_A 163 CMGVAVGNLSMDEKQIQQNIQMSVNFLVSLLKKNWQ--NVRCLYVKSTMGKRVRVF 216 (216)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHCCSSCCSC--SCSEEEECCSSCCCEEEC
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCCc--eEEEEEEECCCCCCEecC
Confidence 999999999999999999999999999999998776 799999999999999997
No 11
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=2.8e-56 Score=402.09 Aligned_cols=199 Identities=23% Similarity=0.380 Sum_probs=186.0
Q ss_pred CCHHHHHHHHHhh----ccCCCCCcEEEEEEe-CcCCCCCCccceeeeecCCCCCCceEEEEEcCcccHHHHHHcCCCcc
Q 022545 78 YDLKTAISLLKQM----SSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLV 152 (295)
Q Consensus 78 y~l~eAI~~lk~~----~~~~F~EsVel~i~L-~id~kk~~~~irg~V~LPh~~gk~~kV~Vfa~~~~~eeAk~aGAd~V 152 (295)
-.+.|||+.+.+. +.++|+||||++++| ++||++ ++++||+|.|||++|++.+|||||+|+++++|+++||++|
T Consensus 7 ~~~~~av~~~l~~~~~~~~~kf~etVel~i~Lk~idp~k-d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~Ak~aGa~~v 85 (217)
T 3o58_A 7 SQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAM 85 (217)
T ss_dssp TTHHHHTTSSSSCCSSSSCCSSCCCCCCCCCSCCSCSSS-SSCCSCCCSCCCCCSSCCCCCCCSSTTSSGGGTTTTCCCC
T ss_pred HHHHHHHHHHHHhcccccccCCCccEEEEEEecccCCCC-CCcCCeEEECCCCCCCCcEEEEEcCcHhHHHHHHcCCCEe
Confidence 4578999888765 478999999999999 999985 9999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHcC------cccccEEEeCccchHHhHh-hchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCeEEEEEcCC
Q 022545 153 GGDDLIEQIKGG------FMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKT 225 (295)
Q Consensus 153 G~~eLi~kIk~g------~~~fD~~lAt~d~m~~l~~-LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~v~~r~dk~ 225 (295)
|++||+++++++ ..+||+||||||+||+|++ ||+.|||+|+||+|+ |+++|+.++|+++++ +++||+++.
T Consensus 86 g~~~L~~~~k~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~--~vt~dv~~~v~~~k~-~v~~r~~k~ 162 (217)
T 3o58_A 86 SVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPV--SHNDDLYGKVTDVRS-TIKFQLKKV 162 (217)
T ss_dssp CSTTTTTTSCSSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCS--CTTTCSSSGGGGTTS-CCSCCCCSS
T ss_pred CHHHHHHHhhchhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCc--CCchhHHHHHHHHhc-eEEEEeCCC
Confidence 999999988766 4799999999999999986 999999999999999 588999999999986 899999999
Q ss_pred CeeeEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEee
Q 022545 226 GIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 282 (295)
Q Consensus 226 g~i~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~ 282 (295)
||+|++||+++|++|||.||+.+++++|.+.+|++|+ ||+++|||||||||++||
T Consensus 163 ~~i~v~IG~~~~~~e~l~eNi~avi~~l~~~~pk~~~--~iksi~lksTmgp~i~iy 217 (217)
T 3o58_A 163 LCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQ--NVGSLVVKSSMGPAFRLY 217 (217)
T ss_dssp SCCCCCCCSSSCCSHHHHHHHHHTCSTTTCCSSSCSC--CCSCCCCCSSSSCSCCC-
T ss_pred CEEEEeeccCCCCHHHHHHHHHHHHHHHHHhcccCCc--eEEEEEEECCCCCCEecC
Confidence 9999999999999999999999999999999998876 799999999999999986
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=100.00 E-value=3.2e-39 Score=271.83 Aligned_cols=135 Identities=43% Similarity=0.781 Sum_probs=129.9
Q ss_pred ccchhHHHHHhhccCCCCCCHHHHHHHHHhhccCCCCCcEEEEEEeCcCCCCCCccceeeeecCCCCCCceEEEEEcCcc
Q 022545 60 TGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGE 139 (295)
Q Consensus 60 ~~~k~~~~~~~~~~~~~~y~l~eAI~~lk~~~~~~F~EsVel~i~L~id~kk~~~~irg~V~LPh~~gk~~kV~Vfa~~~ 139 (295)
+++|||+++.++++..+.|++.|||+++++.+.++|+||||++++||+||+++||++||+|.|||+
T Consensus 2 k~~k~~~~~~~kv~~~~~y~~~eAi~~~k~~~~~kF~EtVel~i~L~vDprk~dq~vrgtV~LP~g-------------- 67 (137)
T 2ov7_A 2 KHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHG-------------- 67 (137)
T ss_dssp --CHHHHHHHTTSCTTCCBCHHHHHHHHHHTCCSSSCCEEEEEEEESSCTTCSSCCCEEEEECTTS--------------
T ss_pred CcCHHHHHHHHhcCcccccCHHHHHHHHHhcccCCCCccEEEEEEeCCCCccccceeeEEEEcCCC--------------
Confidence 579999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHcCCCccccHHHHHHHHcCcccccEEEeCccchHHhHhhchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCeEE
Q 022545 140 KFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVE 219 (295)
Q Consensus 140 ~~eeAk~aGAd~VG~~eLi~kIk~g~~~fD~~lAt~d~m~~l~~LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~v~ 219 (295)
|+++
T Consensus 68 ----------------------------------------------------------------------------g~v~ 71 (137)
T 2ov7_A 68 ----------------------------------------------------------------------------GRIE 71 (137)
T ss_dssp ----------------------------------------------------------------------------CEEE
T ss_pred ----------------------------------------------------------------------------CeEE
Confidence 8999
Q ss_pred EEEcCCCeeeEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEeecc
Q 022545 220 YRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 284 (295)
Q Consensus 220 ~r~dk~g~i~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~~~ 284 (295)
||+|+.|++|++||+++|++|||.||+.+++++|.+.+|.+|+|.||+++|||||||||++|+..
T Consensus 72 fr~dk~~~ih~~VGk~sf~~e~L~eNi~a~i~~l~~~kp~~~kg~~ik~v~issTMGp~i~id~~ 136 (137)
T 2ov7_A 72 FRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPH 136 (137)
T ss_dssp EECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTSCSSCCSCSEEEEEEEETTSCCEEBCTT
T ss_pred EEECCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 13
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=58.81 E-value=7.1 Score=34.22 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=19.6
Q ss_pred hHhhchhccCCCCCCCCCCCCCCC
Q 022545 181 VASLGKILGPRGLMPNPKAGTVTT 204 (295)
Q Consensus 181 l~~LgriLGPrGlMP~pk~GTvt~ 204 (295)
++.|||+||| ++||+.+.++...
T Consensus 116 ~~~l~riLG~-~l~p~gk~P~p~~ 138 (216)
T 3iz5_A 116 IKQIPRLLGP-GLNKAGKFPTLVS 138 (216)
T ss_dssp HHHHHHHHTT-TCSCCTTTTCBCS
T ss_pred HHHHHHHhcc-cccccCCcCCCcC
Confidence 3579999998 8999999998655
No 14
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=42.71 E-value=6.9 Score=33.96 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.3
Q ss_pred ceEEEEEcCcccHHHHHHcCCCcccc
Q 022545 129 SVKVAVLAQGEKFNEAKNAGADLVGG 154 (295)
Q Consensus 129 ~~kV~Vfa~~~~~eeAk~aGAd~VG~ 154 (295)
..|||=+++-++++.|.++|||++|.
T Consensus 3 ~vKICGit~~eda~~a~~~GaD~iGf 28 (205)
T 1nsj_A 3 RVKICGITNLEDALFSVESGADAVGF 28 (205)
T ss_dssp EEEECCCCSHHHHHHHHHHTCSEEEE
T ss_pred cEEECCCCcHHHHHHHHHcCCCEEEE
Confidence 36999999989999999999999994
No 15
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=42.29 E-value=7 Score=33.90 Aligned_cols=25 Identities=28% Similarity=0.162 Sum_probs=22.8
Q ss_pred eEEEEEcCcccHHHHHHcCCCcccc
Q 022545 130 VKVAVLAQGEKFNEAKNAGADLVGG 154 (295)
Q Consensus 130 ~kV~Vfa~~~~~eeAk~aGAd~VG~ 154 (295)
.|||=+++-++++.|.++|||++|.
T Consensus 3 vKICGit~~eda~~a~~~GaD~iGf 27 (203)
T 1v5x_A 3 VKICGITRLEDALLAEALGAFALGF 27 (203)
T ss_dssp EEECCCCCHHHHHHHHHHTCSEEEE
T ss_pred EEEcCCCcHHHHHHHHHcCCCEEEE
Confidence 6899999989999999999999994
No 16
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=41.15 E-value=16 Score=23.26 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhcchhhh
Q 022545 31 EVLKEQLLLLLLLFQLSLRKAR 52 (295)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~ 52 (295)
|-+.|||-||-..+.||.+|.|
T Consensus 17 ekmeeqldllsaildpskskga 38 (40)
T 4h62_K 17 EKMEEQLDLLSAILDPSKSKGA 38 (40)
T ss_pred HHHHHHHHHHHHHcCcccccCC
Confidence 6788999999999999999876
No 17
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=34.29 E-value=24 Score=27.48 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=39.3
Q ss_pred CCceEEEEEcCccc---------HHHHHHcCCCcc----ccHHHHHHHHcCcccccEEEeCccchHHhHhhchhccCCC
Q 022545 127 GKSVKVAVLAQGEK---------FNEAKNAGADLV----GGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRG 192 (295)
Q Consensus 127 gk~~kV~Vfa~~~~---------~eeAk~aGAd~V----G~~eLi~kIk~g~~~fD~~lAt~d~m~~l~~LgriLGPrG 192 (295)
.+..+|+++|.+-. .+.|++.|.++- +..+ +.+-..+||+++..|.+.-....+-+...+.|
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~----~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ 78 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA----HYDIMGVYDLIILAPQVRSYYREMKVDAERLG 78 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS----CTTTGGGCSEEEECGGGGGGHHHHHHHHTTTT
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH----HHhhccCCCEEEEChHHHHHHHHHHHHhhhcC
Confidence 45678999997511 245667777632 2222 23334679999999988877776666666544
No 18
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=34.09 E-value=12 Score=33.10 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCCCCCceEEEEEcCcccHHHHHHcCCCcccc
Q 022545 123 PKGTGKSVKVAVLAQGEKFNEAKNAGADLVGG 154 (295)
Q Consensus 123 Ph~~gk~~kV~Vfa~~~~~eeAk~aGAd~VG~ 154 (295)
|++..=.+|||=+++.++++ |.++|||++|.
T Consensus 16 p~~~~M~VKICGit~~ed~~-a~~~gaD~iGf 46 (228)
T 4aaj_A 16 PRGSHMFVKICGIKSLEELE-IVEKHADATGV 46 (228)
T ss_dssp ----CCEEEECCCCSHHHHH-HHHTTCSEEEE
T ss_pred CCCCceEEEECCCCcHHHHH-HHHcCCCEEEE
Confidence 55443358999999877775 56899999884
No 19
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=32.47 E-value=5.5 Score=34.97 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.0
Q ss_pred hhchhccCCCCCCCCCCCCCC
Q 022545 183 SLGKILGPRGLMPNPKAGTVT 203 (295)
Q Consensus 183 ~LgriLGPrGlMP~pk~GTvt 203 (295)
.|||+||| ++||+.+.++..
T Consensus 119 ~l~riLG~-~l~p~gk~P~p~ 138 (217)
T 3o58_A 119 QVPRLLGP-QLSKAGKFPTPV 138 (217)
T ss_dssp CCSSSSSS-TTHHHHCSSCCS
T ss_pred HHHHHhhh-hhcccCCcCCCc
Confidence 57888998 799988877754
No 20
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=27.61 E-value=31 Score=27.01 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=13.4
Q ss_pred eEEEEeCCCCCcEEeecc
Q 022545 267 KSAYICSSMGPSIRLNIK 284 (295)
Q Consensus 267 k~i~IssTmGp~i~I~~~ 284 (295)
-.||++|++|| |.+++.
T Consensus 87 yqi~LkS~~GP-IdV~L~ 103 (106)
T 2aze_B 87 FQISLKSKQGP-IDVFLC 103 (106)
T ss_dssp EEEEEECSSSC-CEEECC
T ss_pred eEEEEECCCCC-EEEEEe
Confidence 37899999996 777654
No 21
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=23.61 E-value=22 Score=34.68 Aligned_cols=26 Identities=35% Similarity=0.312 Sum_probs=23.6
Q ss_pred ceEEEEEcCcccHHHHHHcCCCcccc
Q 022545 129 SVKVAVLAQGEKFNEAKNAGADLVGG 154 (295)
Q Consensus 129 ~~kV~Vfa~~~~~eeAk~aGAd~VG~ 154 (295)
..|||=+++.++++.|.++|||++|.
T Consensus 256 ~~KICGit~~eda~~a~~~Gad~iGf 281 (452)
T 1pii_A 256 ENKVCGLTRGQDAKAAYDAGAIYGGL 281 (452)
T ss_dssp SCEECCCCSHHHHHHHHHHTCSEEEE
T ss_pred hccccCCCcHHHHHHHHhcCCCEEEe
Confidence 57999999999999999999999993
Done!