RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 022545
(295 letters)
>gnl|CDD|177051 CHL00129, rpl1, ribosomal protein L1; Reviewed.
Length = 229
Score = 371 bits (954), Expect = e-131
Identities = 142/226 (62%), Positives = 181/226 (80%), Gaps = 1/226 (0%)
Query: 62 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVS 121
S+R E+++ E KK Y + AI+LLK+ ++ KF ETAEAH LNIDPKY DQQLR TV+
Sbjct: 5 SRRTKELRSKIE-KKLYSPEEAINLLKETATAKFIETAEAHISLNIDPKYADQQLRTTVT 63
Query: 122 LPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKV 181
LPKGTGK++++AVL EK EAKNAGAD+VG DDLIE+I G ++FD LIA+PDMM K+
Sbjct: 64 LPKGTGKTIRIAVLTNEEKITEAKNAGADIVGSDDLIEEITKGNLDFDLLIATPDMMPKL 123
Query: 182 ASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDD 241
A LG++LGPRGLMP+PK+GTVTT++ AI EFKKGK+EYRADKTGIVH+ FGK++F+E+D
Sbjct: 124 AKLGRVLGPRGLMPSPKSGTVTTDLASAINEFKKGKLEYRADKTGIVHVLFGKSNFTEED 183
Query: 242 LLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 287
LL N A +SIE N+P G KG YWKS YICS+MGPSI+++I +
Sbjct: 184 LLENLQAIYESIEQNRPSGVKGKYWKSFYICSTMGPSIQIDISLLR 229
>gnl|CDD|180071 PRK05424, rplA, 50S ribosomal protein L1; Validated.
Length = 230
Score = 366 bits (942), Expect = e-129
Identities = 115/227 (50%), Positives = 157/227 (69%)
Query: 62 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVS 121
SKR+ + K Y L+ AI+L+K+ ++ KF ET + L +DP+ DQQ+R V
Sbjct: 4 SKRYRAAAEKVDRTKLYSLEEAIALVKETATAKFDETVDVAVNLGVDPRKADQQVRGAVV 63
Query: 122 LPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKV 181
LP GTGK+V+VAV A+GEK EAK AGAD+VGG+DLIE+IKGG+++FD +IA+PDMM KV
Sbjct: 64 LPHGTGKTVRVAVFAKGEKAEEAKAAGADIVGGEDLIEKIKGGWLDFDVVIATPDMMGKV 123
Query: 182 ASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDD 241
LG+ILGPRGLMPNPK GTVT ++ +A++E K GKVE+R DK GI+H P GK F +
Sbjct: 124 GKLGRILGPRGLMPNPKTGTVTMDVAKAVKEAKAGKVEFRVDKAGIIHAPIGKVSFDAEK 183
Query: 242 LLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 288
L N A + +I+ KP AKG Y KS + S+MGP ++++ +
Sbjct: 184 LKENLKALIDAIKKAKPATAKGTYIKSVSLSSTMGPGVKVDPSSLAA 230
>gnl|CDD|211630 TIGR01169, rplA_bact, ribosomal protein L1, bacterial/chloroplast.
This model describes bacterial (and chloroplast)
ribosomal protein L1. The apparent mitochondrial L1 is
sufficiently diverged to be the subject of a separate
model [Protein synthesis, Ribosomal proteins: synthesis
and modification].
Length = 227
Score = 334 bits (858), Expect = e-116
Identities = 118/224 (52%), Positives = 157/224 (70%)
Query: 62 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVS 121
SKR+ + + K Y L AI LLK+ ++ KF ET E RL IDP+ +DQQ+R +V
Sbjct: 3 SKRYRAAREKVDRNKLYSLDEAIDLLKETATAKFDETVEVAIRLGIDPRKSDQQVRGSVV 62
Query: 122 LPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKV 181
LP GTGK+V+VAV A+GEK EAK AGAD VG DDLIE+IK G+++FD +IA+PDMM V
Sbjct: 63 LPHGTGKTVRVAVFAKGEKAKEAKAAGADYVGSDDLIEKIKKGWLDFDVVIATPDMMRVV 122
Query: 182 ASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDD 241
LG+ILGPRGLMPNPK GTVTT++ +A++ KKG+VE+RADK G +H P GK F +
Sbjct: 123 GKLGRILGPRGLMPNPKTGTVTTDVAKAVKNAKKGQVEFRADKAGNIHAPIGKVSFDSEK 182
Query: 242 LLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 285
L N A + +I+ KP GAKG Y K+ + S+MGP I++++
Sbjct: 183 LKENLEALLDAIKKAKPSGAKGQYIKNIALSSTMGPGIKVDLNS 226
>gnl|CDD|223159 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal
structure and biogenesis].
Length = 228
Score = 297 bits (762), Expect = e-102
Identities = 116/223 (52%), Positives = 152/223 (68%), Gaps = 1/223 (0%)
Query: 62 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVS 121
SKR+ + K Y L+ A+ LLK+ S KF ET E L +DP+ DQ++R +V
Sbjct: 5 SKRYRAASEKVDRNKLYSLEEAVKLLKETSKRKFDETVEVAVNLKVDPRKPDQRVRGSVV 64
Query: 122 LPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGG-FMEFDKLIASPDMMVK 180
LP GTGK+V+VAV A GEK EAK AGAD VGG+DLIE IK G +FD IA+PDMM
Sbjct: 65 LPNGTGKTVRVAVFADGEKAEEAKAAGADYVGGEDLIELIKNGRAKDFDVFIATPDMMPL 124
Query: 181 VASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSED 240
V LGK+LGPRGLMPNPK GTVT ++ +A+EE KKG VE+RADK G++H+P GK F ++
Sbjct: 125 VGKLGKVLGPRGLMPNPKTGTVTDDVAKAVEELKKGTVEFRADKAGVIHVPIGKVSFDDE 184
Query: 241 DLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 283
L N A + +I KP GAKG Y KS Y+ ++MGP +++++
Sbjct: 185 KLAENIEALLNAIVKAKPAGAKGQYIKSVYVSTTMGPGVKVDL 227
>gnl|CDD|238235 cd00403, Ribosomal_L1, Ribosomal protein L1. The L1 protein,
located near the E-site of the ribosome, forms part of
the L1 stalk along with 23S rRNA. In bacteria and
archaea, L1 functions both as a ribosomal protein that
binds rRNA, and as a translation repressor that binds
its own mRNA. Like several other large ribosomal
subunit proteins, L1 displays RNA chaperone activity.
L1 is one of the largest ribosomal proteins. It is
composed of two domains that cycle between open and
closed conformations via a hinge motion. The RNA-binding
site of L1 is highly conserved, with both mRNA and rRNA
binding the same binding site.
Length = 208
Score = 227 bits (580), Expect = 1e-74
Identities = 96/210 (45%), Positives = 127/210 (60%), Gaps = 10/210 (4%)
Query: 80 LKTAISLLKQMS--STKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQ 137
L+ AI LK+ S KF ET E L D + DQ++R TV LP G GK VKV V A+
Sbjct: 1 LEEAIKALKKTSVKKRKFDETVELQINLKKDDRKKDQRIRGTVILPHGLGKDVKVCVFAK 60
Query: 138 GEKFNEAKNAGADLVGGDDLIEQIKGG-----FMEFDKLIASP-DMMVKVASLGKILGPR 191
E+ EAK AGAD+VGG+DL ++IK G +FD +A P MM+ LGK+LGPR
Sbjct: 61 DEQAKEAKAAGADVVGGEDLKKKIKNGEAKKLAKDFDLFLADPRIMMLLPKLLGKVLGPR 120
Query: 192 GLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVK 251
G MPNPK GTVT ++ +AIEE K VE+R DK G +H+P GK S + L+ N A +
Sbjct: 121 GKMPNPKTGTVTEDLAKAIEEAKS-SVEFRLDKGGCIHVPVGKVSMSPEQLVENIEAVIN 179
Query: 252 SIEANKPKGAKGVYWKSAYICSSMGPSIRL 281
++ P KG KS Y+ ++MGPS+ +
Sbjct: 180 ALVKKLPS-KKGQNIKSIYLKTTMGPSLPI 208
>gnl|CDD|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family. This
family includes prokaryotic L1 and eukaryotic L10.
Length = 200
Score = 208 bits (533), Expect = 1e-67
Identities = 93/203 (45%), Positives = 125/203 (61%), Gaps = 11/203 (5%)
Query: 84 ISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGE--KF 141
+ LK+ + KF ET E L DP+ DQ +R TV LP G GK VKV V+A+ K
Sbjct: 1 VKALKKTAKRKFDETVELQINLKKDPRKKDQNVRGTVVLPHGLGKDVKVCVIAKDPEAKA 60
Query: 142 NEAKNAGADLVGGDDLIE--QIKGG---FMEFDKLIASPDMMVKVAS-LGKILGPRGLMP 195
EAK+AGAD+VGG+DL E +IK G +FD +A PD+M + LGK+LGPRG MP
Sbjct: 61 KEAKDAGADVVGGEDLKEKYKIKKGRKLAKDFDVFLADPDIMPLLPKLLGKVLGPRGKMP 120
Query: 196 NPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEA 255
NPK TVT ++ +AIEE K G VE+R DK G +H+ GK S ++L+ N A + ++
Sbjct: 121 NPKT-TVTPDVAKAIEEAKSGTVEFRKDKGGCIHVKVGKVSMSPEELVENIEAVINALVK 179
Query: 256 NKPKGAKGVYWKSAYICSSMGPS 278
PKG + KS Y+ ++MGPS
Sbjct: 180 KLPKGWQ--NIKSVYLKTTMGPS 200
>gnl|CDD|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed.
Length = 215
Score = 119 bits (300), Expect = 1e-32
Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 79 DLKTAISLLKQMS-STKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLA 136
++ A+ + + FT++ + L +ID K + ++ V LP G GK VK+AV+A
Sbjct: 6 KIEEAVKEALEEAPKRNFTQSVDLIVNLKDIDLKKPENRIDEEVVLPHGRGKEVKIAVIA 65
Query: 137 QGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKL-------IASPDMMVKVA-SLGKIL 188
+GE +AK AGAD V + +E++ G KL IA D+M + LG +L
Sbjct: 66 KGELALQAKEAGADYVITREELEELGGDKRAAKKLANEYDFFIAEADLMPLIGRYLGPVL 125
Query: 189 GPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLA 248
GPRG MP P +I +E K V R H+ G D S ++L N A
Sbjct: 126 GPRGKMPTPLPPNA--DIKPLVERLKN-TVRIRTKDQPTFHVRVGTEDMSPEELAENIDA 182
Query: 249 AVKSIEANKPKGAKGVYWKSAYICSSMGPSIR 280
+ IE+ KG + + KS Y+ ++MGP+++
Sbjct: 183 VLNRIESKLEKGRQNI--KSVYVKTTMGPAVK 212
>gnl|CDD|233298 TIGR01170, rplA_mito, ribosomal protein L1, mitochondrial. This
model represents the mitochondrial homolog of bacterial
ribosomal protein L1. Unlike chloroplast L1, this form
was not sufficiently similar to bacterial forms to
include in a single bacterial/organellar L1 model
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 141
Score = 96.4 bits (240), Expect = 1e-24
Identities = 53/119 (44%), Positives = 76/119 (63%), Gaps = 6/119 (5%)
Query: 104 RLNIDPKYNDQ----QLRATVSLPKGTGKSVKVAVLAQGE-KFNEAKNAGADLVGGDDLI 158
+N+D + ++ S P GK K+AV +G + EA+ AGAD VGGDDLI
Sbjct: 23 SVNLDIGLLMELGKESVQGMFSFPHPFGKEPKIAVFTKGASEVEEAREAGADYVGGDDLI 82
Query: 159 EQIKGGFME-FDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKG 216
++I+ G ++ FD LIA PD++ ++A L ++LGP+GLMP+PK GTV N+ IE FKKG
Sbjct: 83 KKIEDGEIKPFDYLIAHPDIVPELAQLRRLLGPKGLMPSPKRGTVGDNLLSMIETFKKG 141
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional.
Length = 216
Score = 59.0 bits (143), Expect = 2e-10
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 27/219 (12%)
Query: 79 DLKTAISLLKQMSSTK---FTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAV 134
L+ AI+ + + S K F ET E L + D + D++ +V LP ++KV V
Sbjct: 8 ALRKAIAEILEGSEEKKRKFVETVELQIGLKDYDTQ-KDKRFSGSVKLPNVPKPNLKVCV 66
Query: 135 LAQGEKFNEAKNAGADLVGGDDLIE------QIKGGFMEFDKLIASPDMMVKVASLGKIL 188
L +EAK G D + + L + +K ++D +AS ++ ++ ++L
Sbjct: 67 LGDAVHCDEAKKLGLDFMDIEGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQIP---RLL 123
Query: 189 GPRGLMPNPKAG------TVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDL 242
GP GL KAG T +I I E K V+++ K + + G + +E+ L
Sbjct: 124 GP-GL---NKAGKFPTLITHNDDIEDKINELKS-SVKFQLKKVLCLGVAVGNVEMTEEQL 178
Query: 243 LINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 281
N + ++ + + K + + K+ +I S+MG R+
Sbjct: 179 RQNIVLSINFLVSLLKKNWQNI--KTLHIKSTMGKPQRI 215
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS;
Provisional.
Length = 914
Score = 33.7 bits (77), Expect = 0.11
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 131 KVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFME--FDKLI 172
++A LAQG+ N A +AGA G DLIEQ + E D+LI
Sbjct: 150 EIARLAQGQANNAATSAGATQAGIYDLIEQDQRQAAESALDRLI 193
>gnl|CDD|140252 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Provisional.
Length = 214
Score = 33.1 bits (75), Expect = 0.11
Identities = 43/206 (20%), Positives = 92/206 (44%), Gaps = 16/206 (7%)
Query: 85 SLLKQMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNE 143
++LK KF E+ + L N DP+ D++ ++ LP + V +L +
Sbjct: 15 AVLKVDKERKFKESIDLQVNLKNYDPQ-KDKRFSGSLKLPNVCRPRMTVCLLCDLVHEDI 73
Query: 144 AKNAGADLVGGDDLIEQ------IKGGFMEFDKLIASPDMMVKVASLGKILGPR--GLMP 195
AK G + ++L + +K ++D + S + + ++ +++GP +
Sbjct: 74 AKKEGVPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESI---IKTVPRLVGPHMHRMGK 130
Query: 196 NPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEA 255
P + + ++P + E + V+++ K + G + +E+ L N + A+ + +
Sbjct: 131 FPTVCSPSESLPDKVVELRS-TVKFQLKKVLCLGTCVGHVEMTEEQLRQNVVMAINFLVS 189
Query: 256 NKPKGAKGVYWKSAYICSSMGPSIRL 281
K + + KSAYI S+MG R+
Sbjct: 190 LLKKNWQNL--KSAYIKSTMGKPQRI 213
>gnl|CDD|170047 PRK09687, PRK09687, putative lyase; Provisional.
Length = 280
Score = 29.3 bits (66), Expect = 2.3
Identities = 16/85 (18%), Positives = 29/85 (34%)
Query: 35 EQLLLLLLLFQLSLRKARLRCLSRETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTK 94
++L LL R + +R L G F L K + +L Q+ K
Sbjct: 26 DELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAK 85
Query: 95 FTETAEAHFRLNIDPKYNDQQLRAT 119
+ + N+ + +RA+
Sbjct: 86 RCQDNVFNILNNLALEDKSACVRAS 110
>gnl|CDD|235583 PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.
Length = 318
Score = 28.6 bits (65), Expect = 3.4
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 25/88 (28%)
Query: 108 DPKYNDQQLRATVSL--PKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGF 165
P ++L PK ++ + LA G F A GA+L+GGD
Sbjct: 80 RPAA------FLLALALPKDLDEAW-LEALADG-LFELADRYGAELIGGD---------- 121
Query: 166 MEFDKLIASPDMMVKVASLGKILGPRGL 193
PD+ + V ++G + G R L
Sbjct: 122 -----TTRGPDLSISVTAIGDVPGGRAL 144
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine
oxidase catalyzes the oxidative demethylation of
sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The
enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism, Amino
acids and amines].
Length = 380
Score = 28.6 bits (64), Expect = 4.5
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 67 EIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYND 113
++Q LR+ +++ L K+ +T T + HF +++ PKY++
Sbjct: 286 DVQILRKFVRDH-LPGLNGEPKKGEVCMYTNTPDEHFVIDLHPKYDN 331
>gnl|CDD|216112 pfam00773, RNB, RNB domain. This domain is the catalytic domain of
ribonuclease II.
Length = 322
Score = 27.6 bits (62), Expect = 7.3
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 47 SLRKARLRCLSRETGSKRFLEIQNLREGKKEYDLKTAIS--LLKQMSSTKFTETAEAHFR 104
L+ L + + +Q L E K+ + ++ L + + +++ T HF
Sbjct: 234 KLQDLLKSALELDLDEEGLESLQKLLEELKDSPERRLLNLLLRRTLPRAEYSTTPAPHFG 293
Query: 105 LNID 108
L ++
Sbjct: 294 LGLE 297
>gnl|CDD|223229 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide
transport and metabolism].
Length = 428
Score = 27.9 bits (63), Expect = 7.4
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 150 DLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQ 208
DLV +L+ G E + L K A++G +L G +P+ G V T +
Sbjct: 304 DLV---ELLLAAVDGKLDEVEILFWD-----KGAAVGVVLAAEGYPGDPEKGDVITGDEE 355
Query: 209 AIEE 212
A EE
Sbjct: 356 AEEE 359
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 28.0 bits (63), Expect = 7.9
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 170 KLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADK 224
++I P +M+ V L I PRG+ I + + + K +Y+ D
Sbjct: 39 RIILPPLVMIAVTVLISIFQPRGIFIIASIAMSLVTIIFSTTTYFREKKKYKKDV 93
>gnl|CDD|193573 cd09849, M20_Acy1L2_like_2, M20 Peptidase Aminoacylase 1-like
protein 2, amidohydrolase family. Peptidase M20 family,
Aminoacylase 1-like protein 2 (ACY1L2;
amidohydrolase)-like subfamily. This group contains many
uncharacterized proteins predicted as amidohydrolases,
including gene products of abgA and abgB that catalyze
the cleavage of p-aminobenzoyl-glutamate, a folate
catabolite in Escherichia coli , to p-aminobenzoate and
glutamate. p-Aminobenzoyl-glutamate utilization is
catalyzed by the abg region gene product, AbgT.
Aminoacylase 1 (ACY1) proteins are a class of zinc
binding homodimeric enzymes involved in hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in the protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino
acids (except L-aspartate), especially
N-acetyl-methionine and acetyl-glutamate into L-amino
acids and an acyl group. However, ACY1 can also catalyze
the reverse reaction, the synthesis of acetylated amino
acids. ACY1 may also play a role in xenobiotic
bioactivation as well as the inter-organ processing of
amino acid-conjugated xenobiotic derivatives
(S-substituted-N-acetyl-L-cysteine).
Length = 388
Score = 27.6 bits (62), Expect = 8.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 133 AVLAQGEKFNEAKNAGADLVGGDDLIEQIKG 163
A+ +K + A AGA +GG I+ G
Sbjct: 269 AIKDANKKVDRALKAGAYALGGKVEIKTQPG 299
>gnl|CDD|177990 PLN02361, PLN02361, alpha-amylase.
Length = 401
Score = 27.5 bits (61), Expect = 8.7
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 253 IEANKPKGAKGVYWKSAYICSSMGPSIRLN 282
IEA KP + G YW S C+ GP RL+
Sbjct: 193 IEAAKPLFSVGEYWDS---CNYSGPDYRLD 219
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,105,285
Number of extensions: 1479394
Number of successful extensions: 1353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1337
Number of HSP's successfully gapped: 31
Length of query: 295
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 199
Effective length of database: 6,679,618
Effective search space: 1329243982
Effective search space used: 1329243982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)