RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022545
(295 letters)
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 352
Score = 364 bits (935), Expect = e-127
Identities = 191/233 (81%), Positives = 213/233 (91%)
Query: 62 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVS 121
SKRFLEIQ LRE K+EYDLKTA+SL+KQMSSTKF ETAEAHFRLNIDPKYNDQQLRATVS
Sbjct: 119 SKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVS 178
Query: 122 LPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKV 181
LPKGTGK+VK+AVLAQG+K +EAK AGAD+VGG++LIEQIKGGFM+FDKLIA+ DMM KV
Sbjct: 179 LPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKV 238
Query: 182 ASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDD 241
ASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFGK +F E+D
Sbjct: 239 ASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEED 298
Query: 242 LLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 294
LLIN A +KS+E NKP GAKGVYWKSA+I SSMGPSIRLNI+EMLDYK PSN
Sbjct: 299 LLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein,
nucleotide-binding, protein biosynthesis, translation,
zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB:
3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C*
3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Length = 234
Score = 342 bits (880), Expect = e-120
Identities = 104/225 (46%), Positives = 143/225 (63%)
Query: 62 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVS 121
+KR I+ + K+YD+ AI+LLK++++ KF E+ + L ID + +DQ +R
Sbjct: 5 TKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATV 64
Query: 122 LPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKV 181
LP GTG+SV+VAV QG AK AGA+LVG +DL +QIK G M FD +IASPD M V
Sbjct: 65 LPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVV 124
Query: 182 ASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDD 241
LG++LGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF D
Sbjct: 125 GQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADK 184
Query: 242 LLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 286
L N A + +++ KP AKGVY K I ++MG + ++ +
Sbjct: 185 LKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGL 229
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A
{Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C
2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C
1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C
...
Length = 229
Score = 342 bits (879), Expect = e-120
Identities = 109/224 (48%), Positives = 158/224 (70%), Gaps = 1/224 (0%)
Query: 62 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVS 121
KR+ + + K Y + A L+K++++ KF ET E H +L IDP+ +DQ +R TVS
Sbjct: 5 GKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVS 64
Query: 122 LPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKV 181
LP G GK V+V +A+GEK EA+ AGAD VGG+++I++I G+M+FD ++A+PD+M V
Sbjct: 65 LPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAV 124
Query: 182 AS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSED 240
S LG+ILGPRGL+PNPKAGTV NI + I E K G++E+R DKTG +H P GKA F +
Sbjct: 125 GSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPE 184
Query: 241 DLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 284
L N A ++++EA+KP+GAKG + +S Y+ ++MGPS+R+N
Sbjct: 185 KLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTAMGPSVRINPH 228
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent
of ribosome, rRNA BI regulation of translation,
translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Length = 242
Score = 337 bits (867), Expect = e-118
Identities = 113/232 (48%), Positives = 158/232 (68%), Gaps = 4/232 (1%)
Query: 62 SKRFLEIQNLREGKKEYDLKTAISLLKQMSST---KFTETAEAHFRLNIDPKYNDQQLRA 118
K+++E L + K Y L+ A+ LLK+M +F ET E RLN+DP+Y DQ +R
Sbjct: 5 GKKYIEASKLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRG 64
Query: 119 TVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQI-KGGFMEFDKLIASPDM 177
+V LP G GK +KV V A+GE +A+ AGAD VGGD+LI +I K + +FD IA+P+M
Sbjct: 65 SVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVGGDELINKILKEEWTDFDVAIATPEM 124
Query: 178 MVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADF 237
M KVA LG+ILGPRGLMP+PK GTVTTN+ QAI++ K+G+VE++ DK G VH+P GK F
Sbjct: 125 MPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISF 184
Query: 238 SEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDY 289
++ L+ N AA+ ++ KP GAKG Y K+ + +M PS++L+I E+L
Sbjct: 185 EKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINEVLKK 236
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large
ribosomal subunit, ribosomal R ribosome; 12.10A {Bos
taurus}
Length = 189
Score = 276 bits (707), Expect = 2e-94
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 6/191 (3%)
Query: 100 EAHFRLNIDPKYNDQQLRATVSLPKGTGKSV-KVAVLAQ-GEKFNEAKNAGADLVGGDDL 157
+ + + K N + + +SLP + KVAV + + A+ GA GG L
Sbjct: 2 DLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSL 61
Query: 158 IEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKG- 216
I++I + D +A P++M ++ L K L + P ++ +IP+ +E FK G
Sbjct: 62 IQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKK--YPKLSRNSIGRDIPKMLELFKNGH 119
Query: 217 KVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMG 276
+++ ++ + D S D + N A + + ++P G + A++ SS
Sbjct: 120 EIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHRPL-NLGPFVVRAFLRSSTS 178
Query: 277 PSIRLNIKEML 287
+ L I +L
Sbjct: 179 EGLLLKIDPLL 189
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein,
translation repressor, ribosome; 1.85A
{Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB:
1cjs_A 1u63_A 1dwu_A
Length = 219
Score = 261 bits (669), Expect = 3e-88
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 77 EYDLKTAISLLKQMS-STKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAV 134
L A+ ++++ FT++ E L ID + + +++ V LP G GK K+AV
Sbjct: 3 REALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAV 62
Query: 135 LAQGEKFNEAKNAGADLVGGDDLIE------QIKGGFMEFDKLIASPDMMVKVA-SLGKI 187
+ G+ +A+ G ++ +++ E +++ D IA D+M + +G I
Sbjct: 63 IGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVI 122
Query: 188 LGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFL 247
LGPRG MP P NI +E KK V DK + G +++ ++ N
Sbjct: 123 LGPRGKMPKPVPANA--NIKPLVERLKKTVVINTRDK-PYFQVLVGNEKMTDEQIVDNIE 179
Query: 248 AAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 286
A + + KG + K AY+ +MGP++++ ++
Sbjct: 180 AVLNVVAKKYEKGLY--HIKDAYVKLTMGPAVKVKKEKA 216
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 212
Score = 256 bits (656), Expect = 2e-86
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 14/214 (6%)
Query: 77 EYDLKTAIS-LLKQMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAV 134
+ +++ A+S L+ F ET + L ++D ++ +V LP GTG+ + V
Sbjct: 3 DQEIENAVSRALEDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVV 62
Query: 135 LAQGEKFNEAKNAGADLVGGDDLIE------QIKGGFMEFDKLIASPDMMVKVA-SLGKI 187
A+GE A+ D++ D+L E K + D IA +M + LG +
Sbjct: 63 FAEGETALRAEEVADDVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTV 122
Query: 188 LGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFL 247
LGPRG MP P ++ + IE K V+ R+ + H G D S +++ N
Sbjct: 123 LGPRGKMPEPL--DPDDDVVEVIERM-KNTVQLRSGERRTFHTRVGAEDMSAENIADNID 179
Query: 248 AAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 281
++ + A+ KG + Y+ ++MGP++ +
Sbjct: 180 VILRRLHADLEKGPL--NIDTVYVKTTMGPAMEV 211
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A
{Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5
1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Length = 217
Score = 256 bits (656), Expect = 3e-86
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 15/215 (6%)
Query: 76 KEYDLKTAISLLKQMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAV 134
+ + FT++ E ID K D +LR V LPK K+ +V V
Sbjct: 7 SLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLV 66
Query: 135 LAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKL-------IASPDMMVKVAS-LGK 186
+ E+ AK A +V + +++++G KL + + + M LG
Sbjct: 67 VPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGP 126
Query: 187 ILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINF 246
LGPRG P P T +I + I FK+ V + V + G D +DL N
Sbjct: 127 ALGPRGKFPTPLPNTA--DISEYINRFKRS-VLVKTKDQPQVQVFIGTEDMKPEDLAENA 183
Query: 247 LAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 281
+A + +IE ++ Y+ ++MG ++++
Sbjct: 184 IAVLNAIENKAK---VETNLRNIYVKTTMGKAVKV 215
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins,
ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A
3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B
3jyw_A
Length = 217
Score = 236 bits (603), Expect = 3e-78
Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 12/221 (5%)
Query: 68 IQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTG 127
+ + + +K + + F ET E L D++ ++ LP
Sbjct: 1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPR 60
Query: 128 KSVKVAVLAQGEKFNEAKNAGADLVGGDDLIE------QIKGGFMEFDKLIASPDMMVKV 181
++ + + + AK+ G D + DDL + IK +++ IAS ++ +V
Sbjct: 61 PNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQV 120
Query: 182 A-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSED 240
LG L G P P + ++ + + + ++++ K + + G + ED
Sbjct: 121 PRLLGPQLSKAGKFPTPV--SHNDDLYGKVTDV-RSTIKFQLKKVLCLAVAVGNVEMEED 177
Query: 241 DLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 281
L+ L +V + K S + SSMGP+ RL
Sbjct: 178 VLVNQILMSVNFFVSLLKK--NWQNVGSLVVKSSMGPAFRL 216
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_A
Length = 216
Score = 228 bits (583), Expect = 3e-75
Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 13/215 (6%)
Query: 76 KEYDLKTAISLLKQMSST---KFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKV 132
+ +K AI+ + + KFTET E L D++ +V LP ++V
Sbjct: 5 QSDAVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMRV 64
Query: 133 AVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMV---KVASLGKILG 189
+L + ++A+ G D + + L + K + + + + ++LG
Sbjct: 65 CMLGDAQHVDQAEKMGLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
Query: 190 PRGLMPNPKAGTVTT---NIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINF 246
P GL K T+ + ++ + E K V+++ K + + G E + N
Sbjct: 125 P-GLNKAGKFPTLVSHQESLEAKVNE-TKATVKFQLKKVLCMGVAVGNLSMDEKQIQQNI 182
Query: 247 LAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 281
+V + + + Y+ S+MG +R+
Sbjct: 183 QMSVNFLVSLLK--KNWQNVRCLYVKSTMGKRVRV 215
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A
2vpl_A
Length = 137
Score = 179 bits (455), Expect = 5e-57
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 166 MEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGT----VTTNIPQAIEEFKKGKVEYR 221
++ +K+ + V L + + K G N+ + G++E+R
Sbjct: 14 VDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGGRIEFR 73
Query: 222 ADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 281
DKTG +H P GKA F + L N A ++++EA+KP+GAKG + +S Y+ ++MGPS+R+
Sbjct: 74 NDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRI 133
Query: 282 NIK 284
N
Sbjct: 134 NPH 136
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 1e-08
Identities = 55/342 (16%), Positives = 102/342 (29%), Gaps = 84/342 (24%)
Query: 4 LDTCWRLLLLSKLILTWPLTMWRTILREVLKE--QLLLLLLLFQLSLRKARLRCLSRETG 61
D C + + K IL+ + + ++ + L LF L K +E
Sbjct: 33 FD-CKDVQDMPKSILS------KEEIDHIIMSKDAVSGTLRLFWTLLSK-------QEEM 78
Query: 62 SKRFLEIQNLREGKKEYD-LKTAISLLKQMSSTKFTETAEAHFRLNID----PKYND--- 113
++F+E + LR Y L + I ++ S E RL D KYN
Sbjct: 79 VQKFVE-EVLR---INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 114 ----------QQLRAT--VSL--PKGTGKSVKVAVLAQGEKFNEAKNAG------ADLVG 153
+LR V + G+GK+ + K + +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 154 GDDLIEQIKGGFMEFDK-LIASPDMM----VKVASLGKILGPRGLM---PNPKAGTVTTN 205
+ ++E ++ + D + D +++ S+ L R L+ P V N
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLLN 252
Query: 206 I--PQAIEEFKKG-KV--------------EYRADKTGIVHIPFGKADFSEDDLLINFLA 248
+ +A F K+ + H + D++ + L
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVK-SLLL 308
Query: 249 AVKSIEANK-PKGAKGVYWKSAYICSSMGPSIRLNIKEMLDY 289
P+ + S + SIR + D
Sbjct: 309 KYLDCRPQDLPREVLTT---NPRRLSIIAESIR-DGLATWDN 346
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 34.1 bits (79), Expect = 0.037
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 108 DPKYNDQQ-----LRATVSLPKGTGKSVKVAVLAQG-----EKFNEAKNAGADLVGGDD 156
DP ++ +Q ++A + G K+A++ G G D V D
Sbjct: 5 DPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDS 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.40
Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 59/162 (36%)
Query: 41 LLLFQLSLRKARLRCL---SRETGSKR-------FLEI-----------------QNLRE 73
L L+LRKA+ SR S+R FL + ++L +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 74 GKKEY---DLKTAISLLKQMSSTKFTETAEAHFRL---NIDPKYNDQQLRATVSLPK--- 124
+ D++ + T R+ +I + D +R V
Sbjct: 446 NNVSFNAKDIQIPV---------YDTFDGS-DLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 125 ---------GTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDL 157
G G + + VL K + G ++ L
Sbjct: 496 FKATHILDFGPGGASGLGVLTHRNK--DGT--GVRVIVAGTL 533
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Length = 280
Score = 28.7 bits (65), Expect = 2.2
Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 11/59 (18%)
Query: 108 DPKYNDQQ-----LRATVSLPKGTG-KSVKVAVLAQG-----EKFNEAKNAGADLVGGD 155
D Y Q + G ++AV+ G + G D V D
Sbjct: 5 DTYYQGYQYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDND 63
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 28.7 bits (65), Expect = 2.7
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 207 PQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIE 254
Q I+ + +V+ A ++ F + L + IE
Sbjct: 299 DQIIDMLRVEQVKIHAGPKFASYLTFSPS--EVKSLRTEYGDLELCIE 344
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 28.2 bits (62), Expect = 3.2
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 219 EYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVY 265
Y + I HI DF DL + A V ++ + Y
Sbjct: 64 AYAKKYSDIQHIRCEIRDFDAFDLRMRLPAVVGTLYKAVKRNGGVTY 110
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 28.1 bits (63), Expect = 3.5
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 11/60 (18%)
Query: 108 DPKYNDQ------QLRATVSLPKGTGKSVKVAVLAQG-----EKFNEAKNAGADLVGGDD 156
P + + S+ G+ ++VAVL G + G
Sbjct: 3 QPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKV 62
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: c.46.1.3
Length = 129
Score = 26.6 bits (59), Expect = 4.9
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 211 EEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKS 252
EEF +G G +++P+ S +FL V S
Sbjct: 42 EEFSQGHAC------GAINVPYMNRGASGMSKNTDFLEQVSS 77
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 27.7 bits (62), Expect = 6.3
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 16/63 (25%)
Query: 174 SPDMMVKVASLGKILGPRGLM----------------PNPKAGTVTTNIPQAIEEFKKGK 217
+ + + ++S+ + LG G++ + G VT E+F +G+
Sbjct: 260 NDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGE 319
Query: 218 VEY 220
+++
Sbjct: 320 IDH 322
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A
{Actinobacillus pleuropneumoniae serovaorganism_taxid}
PDB: 3q3h_A* 3q3i_A
Length = 631
Score = 27.2 bits (60), Expect = 7.1
Identities = 3/54 (5%), Positives = 9/54 (16%), Gaps = 2/54 (3%)
Query: 22 LTMWRTILREVLKEQLLLLLLLFQLSLRKARLRCLSRETGSKR--FLEIQNLRE 73
L + I + L + + + +
Sbjct: 458 LEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKSYLGDSATAHPHSPYHQ 511
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 26.8 bits (60), Expect = 9.8
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 205 NIPQAIEEFKKGKVEYR 221
+P+ E+ +KG++ R
Sbjct: 324 TLPEIYEKMEKGQIVGR 340
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,458,726
Number of extensions: 272505
Number of successful extensions: 548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 25
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)